BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013548
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
+WT EE + F + L FGR W KI + +G++T +Q++S+A+++F V+
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 63 WTEEEHKKFLEALKLF------GRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
WT EE KK + L + R W+KI + +G +TA Q+ S QK+F K+ +
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64
>pdb|2X0L|B Chain B, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 133
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 51 RKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
R P I K RWT EE ++A++ +GR ++ I + +G K+ VQ+++ FF R
Sbjct: 64 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 119
Query: 111 ESN 113
N
Sbjct: 120 RFN 122
>pdb|2IW5|B Chain B, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|B Chain B, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|B Chain B, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 235
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 51 RKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
R P I K RWT EE ++A++ +GR ++ I + +G K+ VQ+++ FF R
Sbjct: 124 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 179
Query: 111 ESN 113
N
Sbjct: 180 RFN 182
>pdb|2V1D|B Chain B, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 178
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 51 RKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
R P I K RWT EE ++A++ +GR ++ I + +G K+ VQ+++ FF R
Sbjct: 67 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 122
Query: 111 ESN 113
N
Sbjct: 123 RFN 125
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 51 RKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
R P I K RWT EE ++A++ +GR ++ I + +G K+ VQ+++ FF R
Sbjct: 371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 426
Query: 111 ESN 113
N
Sbjct: 427 RFN 429
>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 66
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 59 QRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCST 117
++ W+ EE +K L KL WR I +G +TA Q H + K + +G S+
Sbjct: 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRDSGPSS 65
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 31.6 bits (70), Expect = 0.93, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 59 QRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSH 100
++ WTEEE + EA K+ G W +I + + +T +++H
Sbjct: 58 KKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNH 99
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 63 WTEEEHKKFLEALKLFG-RAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESN 113
WT+EE +K +E +K +G + W I +H+ + Q R + V++S+
Sbjct: 10 WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSS 61
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 63 WTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFFS 106
WT +E LEA+ G W+ + + TKT + H K+FS
Sbjct: 11 WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 59 QRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSH 100
++ WTEEE + +A K G W +I + + +T I++H
Sbjct: 4 KKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNH 45
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 59 QRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSH 100
++ WTEEE + +A K G W +I + + +T I++H
Sbjct: 2 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNH 43
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 59 QRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSH 100
++ WTEEE + +A K G W +I + + +T I++H
Sbjct: 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNH 96
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 59 QRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSH 100
++ WTEEE + +A K G W +I + + +T I++H
Sbjct: 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNH 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,513,069
Number of Sequences: 62578
Number of extensions: 357810
Number of successful extensions: 751
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 733
Number of HSP's gapped (non-prelim): 20
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)