BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013548
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 70/96 (72%), Gaps = 8/96 (8%)
Query: 49 KPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKV 108
K RKPYTI+KQRE WT+EEH+KFLEAL LF R W+KIE VG+KT +QIRSHAQK+F KV
Sbjct: 30 KSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFIKV 89
Query: 109 VRESNGCSTSPVEPVEIPPPRPKRKPMHPYPRKLAH 144
+ + G IPPPRPKRK + PYP+K H
Sbjct: 90 QKNNTGE--------RIPPPRPKRKSIQPYPQKQKH 117
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 84/106 (79%), Gaps = 2/106 (1%)
Query: 38 DQFSCGNDFAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQI 97
D + G + K RKPYTITKQRERWTE+EH++FLEAL+L+GRAW++IEEH+GTKTAVQI
Sbjct: 2 DTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQI 61
Query: 98 RSHAQKFFSKVVRES--NGCSTSPVEPVEIPPPRPKRKPMHPYPRK 141
RSHAQKFF+K+ +E+ G +EIPPPRPKRKP PYPRK
Sbjct: 62 RSHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRK 107
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 82/103 (79%), Gaps = 2/103 (1%)
Query: 41 SCGNDFAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSH 100
S G D K RKPYTITKQRERWTEEEH +F+EAL+L+GRAW+KIEEHV TKTAVQIRSH
Sbjct: 5 SSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSH 64
Query: 101 AQKFFSKVVR--ESNGCSTSPVEPVEIPPPRPKRKPMHPYPRK 141
AQKFFSKV + E+ G + + IPPPRPKRKP +PYPRK
Sbjct: 65 AQKFFSKVEKEAEAKGVAMGQALDIAIPPPRPKRKPNNPYPRK 107
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 75/117 (64%), Gaps = 12/117 (10%)
Query: 29 HTVTGLEVKDQ----FSCGNDFAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRK 84
HT T + V + S D K RKPYTITK RE WTE+EH KFLEAL LF R W+K
Sbjct: 26 HTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKK 85
Query: 85 IEEHVGTKTAVQIRSHAQKFFSKVVRESNGCSTSPVEPVEIPPPRPKRKPMHPYPRK 141
I+ VG+KT +QIRSHAQK+F KV + NG +PPPRPKRK HPYP+K
Sbjct: 86 IKAFVGSKTVIQIRSHAQKYFLKV--QKNGTKE------HLPPPRPKRKANHPYPQK 134
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 60 RERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGC 115
R WT+EE + F+EA KL+ + +KI+EHV TKT +Q+RSHAQKF K+ E NG
Sbjct: 150 RSSWTKEEERLFVEAYKLYDKDNKKIQEHVKTKTILQVRSHAQKFALKL--EKNGI 203
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 63 WTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCSTSPVE 121
W+ EEH+ FL+A++ +GR W+ I + ++ +QI++HA+ +F K+ +++ S +
Sbjct: 232 WSNEEHELFLKAIEKYGRGNWKLISTLIKSRNTLQIKNHARIYFDKISQQNGPPSKKTII 291
Query: 122 PVE 124
VE
Sbjct: 292 EVE 294
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 57 TKQRERWTEEEHKKFLEALKLFGR-AWRKIEEHVGTKTAVQIRSHAQKFFSKVVRES 112
T ++ WT+EEH +FL +++ G+ AW++I + VGT+T QI+SHAQK++ + +E+
Sbjct: 373 TSLKQGWTKEEHIRFLNGIQIHGKGAWKEIAQFVGTRTPTQIQSHAQKYYLRQKQET 429
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 58 KQRERWTEEEHKKFLEALKLFG-RAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111
KQ WT EEH +F+EAL +G + + I ++V T+ Q+R+HAQK+F ++ RE
Sbjct: 170 KQSRYWTPEEHSRFIEALSKYGHKDVKSISQYVSTRNPTQVRTHAQKYFLRIDRE 224
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFF--------SKVVRESN 113
RW EEE + F + L FGR W KI + +GT+T +Q++S+A+++F + V +N
Sbjct: 101 RWAEEEKELFEKGLAQFGRRWTKIAKLIGTRTVLQVKSYAKQYFKNKPKAEPAAEVTSAN 160
Query: 114 GCSTSPVEP 122
S S ++P
Sbjct: 161 VTSVSSIQP 169
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 16/88 (18%)
Query: 63 WTEEEHKKFLEALKLFGRA-WRKIEEH-VGTKTAVQIRSHAQKFFSKVVRESNG------ 114
WTEEEHK FL LK +G+ WR I + V T+T Q+ SHAQK+F +R+ +G
Sbjct: 134 WTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYF---IRQLSGGKDKRR 190
Query: 115 -----CSTSPVEPVEIPPPRPKRKPMHP 137
+T + + P P K+ P P
Sbjct: 191 ASIHDITTVNLSDNQTPSPDNKKPPSSP 218
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 50 PRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVV 109
P KP + + +WT EE + F + L FGR W KI + +G++T +Q++S+A+++F V
Sbjct: 111 PTKPASYSV---KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 167
Query: 110 R 110
+
Sbjct: 168 K 168
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
Length = 297
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Query: 58 KQRER---WTEEEHKKFLEALKLFGRA-WRKIEEH-VGTKTAVQIRSHAQKFF 105
++R+R WTEEEHK FL L+ G+ WR I + V T+T Q+ SHAQK+F
Sbjct: 89 RERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 141
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFF 105
+WT EE + F + L +GR W KI + +G++T +Q++S+A+++F
Sbjct: 121 KWTSEEKELFEQGLVKYGRRWTKIAKLIGSRTVLQVKSYARQYF 164
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
+WT EE + F + L FGR W KI + ++T +Q++S+A+++F V+
Sbjct: 117 KWTVEEKELFEQGLAKFGRRWTKIATLLKSRTVLQVKSYARQYFKNKVK 165
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 62 RWTEEEHKKFLEALKLFG-RAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCSTSPV 120
WT EEH KFLEA++ FG + + I + V T+ Q+R+H + + S++ V
Sbjct: 656 HWTSEEHNKFLEAVQQFGIKDYHAIAKFVQTRNHHQVRTHVNTYLKNQKKAEAATSSTQV 715
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 26/123 (21%)
Query: 63 WTEEEHKKFLEALKLF------GRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCS 116
WT EE KK + L + R W+KI + +G +TA Q+ S QK+F K+ +
Sbjct: 662 WTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGI--- 718
Query: 117 TSPVEPVEIPPPRPKRKP-MHPYPRKLA-----HPPVKESLNPELSRTSLSPILSVSERE 170
P P R P ++ Y RK + HP K P TS P + + E +
Sbjct: 719 -----------PVPGRTPNLYIYSRKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDD 767
Query: 171 NQS 173
++S
Sbjct: 768 DRS 770
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFF 105
+WT+EE F + L FGR W I +G+++ +Q++++A+ +F
Sbjct: 111 KWTKEEKNLFEQGLATFGRRWTSIARLIGSRSVLQVKNYARHYF 154
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 26/123 (21%)
Query: 63 WTEEEHKKFLEALKLF------GRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCS 116
WT EE KK + L + R W+KI + +G +TA Q+ S QK+F K+ +
Sbjct: 655 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAG---- 710
Query: 117 TSPVEPVEIPPPRPKRKP-MHPYPRKLA-----HPPVKESLNPELSRTSLSPILSVSERE 170
P P R P ++ Y +K + HP K P TS P + + E +
Sbjct: 711 ----------IPVPGRTPNLYIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDD 760
Query: 171 NQS 173
++S
Sbjct: 761 DRS 763
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3
Length = 503
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 63 WTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCSTSPVEP 122
W+ +E LEA++ +G W +I HVG++T Q H
Sbjct: 250 WSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHF--------------------- 288
Query: 123 VEIPPPRPKRKPMHP--YPRKLAHPPVKESLNPELSR-TSLSPILSVSERENQSPTSVLF 179
++IP P R+ + P K P E+ NP LS T L+ I+ +E + SV
Sbjct: 289 LQIPIEDPYRQKLQGDFSPFKKGFLPFDENENPVLSTLTYLASIVQQGMKERKQNESV-- 346
Query: 180 AIGSDAFGSSDSNSP 194
G +FG+S+ +P
Sbjct: 347 KQGETSFGNSEFKNP 361
>sp|Q54K19|MYBD_DICDI Myb-like protein D OS=Dictyostelium discoideum GN=mybD PE=3 SV=1
Length = 595
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 63 WTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQ 102
WT+EE +K + +G++W+ I H KT Q++SH Q
Sbjct: 443 WTQEEDEKMAQLYNKYGKSWKAIHSHFDDKTREQVQSHGQ 482
>sp|Q5FWT8|RCOR2_RAT REST corepressor 2 OS=Rattus norvegicus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 51 RKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIR----SHAQKF-F 105
R P TK RWT +E ++A++ +G+ + I E +G KT Q++ S+ ++F
Sbjct: 320 RPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNL 379
Query: 106 SKVVR----ESNGCSTSPVEPVE 124
+V++ E +G T+PV PVE
Sbjct: 380 EEVLQEWEAEQDGAPTAPV-PVE 401
>sp|O70145|NCF2_MOUSE Neutrophil cytosol factor 2 OS=Mus musculus GN=Ncf2 PE=2 SV=1
Length = 525
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 71/195 (36%), Gaps = 24/195 (12%)
Query: 39 QFSCGNDFAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIR 98
Q + + +PR W + K F + GR +R E V
Sbjct: 143 QLALATNMKSEPRHSKIDKAMESIWKQ---KLFEPVVIPVGRLFRPNERQVAQLAKKDYL 199
Query: 99 SHAQKFFSKVVRESNGCSTSPVEPVEI-PPPRPKRKPMHPYPRKLAHPPVKESLNPELSR 157
A + VV + N +P++P PPPRPK P + +L E R
Sbjct: 200 GKA-TVVASVVHQDNFSGFAPLQPQSAEPPPRPKT------------PEIFRALEGEAHR 246
Query: 158 TSLSPILSVSERENQSPTSVLFAI--GSDAFGSSDSNSPNGSLSPVSSAVPEQLGGLTLS 215
+ E P +++F + GSD + + N G L P + P +L
Sbjct: 247 VLFGFVPETPEELQVMPGNIVFVLKKGSDNWATVMFNGQKG-LVPCNYLEPVELR----I 301
Query: 216 HPSSSPEERGSPSSD 230
HP S P+E SP SD
Sbjct: 302 HPQSQPQEDTSPESD 316
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 41 SCGNDFAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSH 100
SC + P K Y + + WT++E LEA++L+ W +I +HVG+K+ Q H
Sbjct: 382 SCLDFVRVDPMKFYG-DQDGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILH 440
>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-like protein OS=Mus musculus GN=Cdc5l PE=1
SV=2
Length = 802
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 63 WTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCSTSPVEP 122
W+ EE +K L KL WR I +G +TA Q H + K + N T+ +P
Sbjct: 63 WSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKTAQRDNEEETTD-DP 120
Query: 123 VEIPP----PRPKRKPMHPYP 139
++ P P P+ KP P P
Sbjct: 121 RKLKPGEIDPNPETKPARPDP 141
>sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein OS=Homo sapiens GN=CDC5L PE=1
SV=2
Length = 802
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 63 WTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCSTSPVEP 122
W+ EE +K L KL WR I +G +TA Q H + K + N T+ +P
Sbjct: 63 WSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRDNEEETTD-DP 120
Query: 123 VEIPP----PRPKRKPMHPYP 139
++ P P P+ KP P P
Sbjct: 121 RKLKPGEIDPNPETKPARPDP 141
>sp|O08837|CDC5L_RAT Cell division cycle 5-like protein OS=Rattus norvegicus GN=Cdc5l
PE=1 SV=2
Length = 802
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 63 WTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCSTSPVEP 122
W+ EE +K L KL WR I +G +TA Q H + K + N T+ +P
Sbjct: 63 WSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKTAQRDNEEETTD-DP 120
Query: 123 VEIPP----PRPKRKPMHPYP 139
++ P P P+ KP P P
Sbjct: 121 RKLKPGEIDPNPETKPARPDP 141
>sp|Q2KJC1|CDC5L_BOVIN Cell division cycle 5-like protein OS=Bos taurus GN=CDC5L PE=2 SV=1
Length = 802
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 63 WTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCSTSPVEP 122
W+ EE +K L KL WR I +G +TA Q H + K + N T+ +P
Sbjct: 63 WSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRDNEEETTD-DP 120
Query: 123 VEIPP----PRPKRKPMHPYP 139
++ P P P+ KP P P
Sbjct: 121 RKLKPGEIDPNPETKPARPDP 141
>sp|Q9UKL0|RCOR1_HUMAN REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=1
Length = 482
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 51 RKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
R P I K RWT EE ++A++ +GR ++ I + +G K+ VQ+++ FF R
Sbjct: 371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 426
Query: 111 ESN 113
N
Sbjct: 427 RFN 429
>sp|Q8CFE3|RCOR1_MOUSE REST corepressor 1 OS=Mus musculus GN=Rcor1 PE=1 SV=2
Length = 477
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 51 RKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
R P I K RWT EE ++A++ +GR ++ I + +G K+ VQ+++ FF R
Sbjct: 365 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN----FFVNYRR 420
Query: 111 ESN 113
N
Sbjct: 421 RFN 423
>sp|Q54YB7|MYBF_DICDI Myb-like protein F OS=Dictyostelium discoideum GN=mybF PE=3 SV=1
Length = 564
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 60 RERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQ 102
R WT EE + + E +G+ W+KI+ H K+ Q+ SH Q
Sbjct: 414 RTVWTLEEEELYKEVFNHYGKNWKKIKTHFPDKSKSQVTSHGQ 456
>sp|Q8C796|RCOR2_MOUSE REST corepressor 2 OS=Mus musculus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 51 RKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIR----SHAQKF-F 105
R P TK RWT +E ++A++ +G+ + I E +G KT Q++ S+ ++F
Sbjct: 320 RPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNL 379
Query: 106 SKVVR----ESNGCSTSPV 120
+V++ E +G +PV
Sbjct: 380 EEVLQEWEAEQDGAPAAPV 398
>sp|Q8IZ40|RCOR2_HUMAN REST corepressor 2 OS=Homo sapiens GN=RCOR2 PE=1 SV=2
Length = 523
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 51 RKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
R P TK RWT +E ++A++ +G+ + I E +G KT Q+++ FF R
Sbjct: 320 RPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT----FFVSYRR 375
Query: 111 ESN 113
N
Sbjct: 376 RFN 378
>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1
PE=1 SV=2
Length = 743
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 57 TKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESN 113
T+Q WT +E + F AL+ G+ + KI V +K Q+R ++ ++VR N
Sbjct: 52 TRQWAAWTHQEEESFFTALRQVGKNFEKITSRVQSKNKDQVR----HYYYRLVRRMN 104
>sp|Q55GK3|MYBM_DICDI Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1
Length = 669
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 56 ITKQRERWTEEEHKKFLEALKLFG-RAWRKIE-EHVGTKTAVQIRSHAQKFFSKVVRE 111
I + +WTEEE +K + + ++G + W++I E G KT Q H ++ S +R+
Sbjct: 63 IRRSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRK 120
>sp|P25357|SNT1_YEAST Probable DNA-binding protein SNT1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNT1 PE=1 SV=2
Length = 1226
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 63 WTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQK 103
W+ E + F E LK FG W I E +GTK+ +R++ Q+
Sbjct: 892 WSVRESQLFPELLKEFGSQWSLISEKLGTKSTTMVRNYYQR 932
>sp|B6MUN4|MYSM1_BRAFL Histone H2A deubiquitinase MYSM1 OS=Branchiostoma floridae GN=MYSM1
PE=3 SV=1
Length = 809
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 71 FLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFF-SKVVR 110
F +++GR+W I + V T+T +Q++++A+ FF +KVV+
Sbjct: 40 FDHGQEIYGRSWTSISQFVQTRTPLQVKNYARHFFKTKVVQ 80
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 6/31 (19%)
Query: 49 KPRKPYTITKQRERWTEEEHKKFLEALKLFG 79
KPRKP R WTEE H+KFLEA+++ G
Sbjct: 212 KPRKP------RMTWTEELHQKFLEAIEIIG 236
>sp|Q90WN5|RCOR1_XENLA REST corepressor 1 OS=Xenopus laevis GN=rcor1 PE=2 SV=1
Length = 431
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESN 113
RWT EE ++A++++GR ++ I + +G K+ VQ+++ FF R N
Sbjct: 331 RWTTEEQLLAVQAIRMYGRDFQAISDVIGNKSVVQVKN----FFVNYRRRFN 378
>sp|Q07105|GDF9_MOUSE Growth/differentiation factor 9 OS=Mus musculus GN=Gdf9 PE=2 SV=2
Length = 441
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 15 VFSAGNGIESSSGLHTVTGLEVKDQFSCGNDFAPKPRKPYTITKQRERWTEEEHKKFLEA 74
+++ N SSS + + L VK+ S G AP PR PY+ T ++ RW E + L+
Sbjct: 159 LYTLNNSASSSSTVTCMCDLVVKEAMSSGR--AP-PRAPYSFTLKKHRWIEIDVTSLLQP 215
Query: 75 L 75
L
Sbjct: 216 L 216
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 40 FSCGNDFAP-KPRKPYTITKQRE------RWTEEEHKKFLEALKLFGRA-WRKIEEHVGT 91
FS G + P + PY + W +E LE ++++G W ++ EHVGT
Sbjct: 81 FSVGAEVTPHRSNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGLGNWAEVAEHVGT 140
Query: 92 KTAVQIRSH 100
KT Q H
Sbjct: 141 KTKAQCIDH 149
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 49 KPRKPYTITKQ-RERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQ 96
+P K I +Q E W++E+ +K L+ ++ FG W K+ ++VG K+ Q
Sbjct: 512 RPLKKVKILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPEQ 560
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
Length = 1132
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 57 TKQRER---------WTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRS 99
TKQR+R W++EE ++F E + FG+ W+K+ V +++A + +
Sbjct: 32 TKQRKRKLSDMLGPQWSKEELERFYEGYRKFGKEWKKVAGFVHSRSAEMVEA 83
>sp|P19878|NCF2_HUMAN Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2
Length = 526
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 21/135 (15%)
Query: 106 SKVVRESNGCSTSPVEP-VEIPPPRPKRKPMHPYPRKLAHPPVKESLNPELSRTSLSPIL 164
+ VV + + +P++P PPPRPK P + +L E R +
Sbjct: 206 ASVVDQDSFSGFAPLQPQAAEPPPRPKT------------PEIFRALEGEAHRVLFGFVP 253
Query: 165 SVSERENQSPTSVLFAI--GSDAFGSSDSNSPNGSLSPVSSAVPEQLGGLTLSHPSSSPE 222
E P +++F + G+D + + N G L P + P +L HP P+
Sbjct: 254 ETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKG-LVPCNYLEPVELR----IHPQQQPQ 308
Query: 223 ERGSPSSD-PVTPGS 236
E SP SD P P S
Sbjct: 309 EESSPQSDIPAPPSS 323
>sp|Q6P116|RCOR2_DANRE REST corepressor 2 OS=Danio rerio GN=rcor2 PE=2 SV=1
Length = 536
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 49 KPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKV 108
+PR+P K RWT EE ++A++ +G+ + I + +G KT Q+ S FF
Sbjct: 321 RPREPNQ--KINSRWTTEEQLLAVQAVRRYGKDFAAIADVIGNKTVAQVSS----FFVSY 374
Query: 109 VRESN 113
R N
Sbjct: 375 RRRFN 379
>sp|P22035|BAS1_YEAST Myb-like DNA-binding protein BAS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BAS1 PE=1 SV=1
Length = 811
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 63 WTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110
WT EE + +K +G WRKI + + ++ R+ +K + VVR
Sbjct: 172 WTLEEDLNLISKVKAYGTKWRKISSEMEFRPSLTCRNRWRKIITMVVR 219
>sp|Q6C8F5|CEF1_YARLI Pre-mRNA-splicing factor CEF1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CEF1 PE=3 SV=1
Length = 719
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 63 WTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGCSTSPV-- 120
W+ EE +K L K+F WR I VG +TA Q ++ ++V E G S V
Sbjct: 61 WSREEDEKLLHLAKIFPAQWRTIAPFVG-RTAHQCIQRYERLLAEVAGEVEGEDASAVAS 119
Query: 121 EPVEIPPPRPKRKPMHP 137
P P+ KP P
Sbjct: 120 APATEGDQFPETKPARP 136
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1
SV=1
Length = 487
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 63 WTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFF 105
W+ ++ LE L+++G W ++ EHVGTK+ Q H + +
Sbjct: 105 WSADDEMLLLEGLEIYGLGNWAEVAEHVGTKSKEQCLEHYRNIY 148
>sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2
Length = 2440
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESN 113
RWTEEE + + L GR W I + VGTK+ Q ++ F+ R N
Sbjct: 627 RWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKN----FYFNYKRRHN 674
>sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1
Length = 2453
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESN 113
RWTEEE + + L GR W I + VGTK+ Q ++ F+ R N
Sbjct: 626 RWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKN----FYFNYKRRHN 673
>sp|P34127|MYBA_DICDI Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2
Length = 1230
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 63 WTEEEHKKFLEALKLFG-RAWRKIEEHVGTKTAVQIRSHAQK 103
WT EE + ++A+ L + W+KI EH +T VQ QK
Sbjct: 152 WTSEEDQILIKAVNLHNQKNWKKIAEHFPDRTDVQCHHRYQK 193
>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2
Length = 2525
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRS 99
RWTEEE + + L GR W I VG+KT Q ++
Sbjct: 614 RWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKN 651
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,910,624
Number of Sequences: 539616
Number of extensions: 7454636
Number of successful extensions: 25804
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 292
Number of HSP's that attempted gapping in prelim test: 24943
Number of HSP's gapped (non-prelim): 971
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)