Query 013548
Match_columns 441
No_of_seqs 201 out of 560
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 12:38:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.6 9.1E-16 3.1E-20 124.1 5.8 61 45-105 3-63 (79)
2 2yum_A ZZZ3 protein, zinc fing 99.5 6.8E-15 2.3E-19 115.8 6.9 54 58-111 6-65 (75)
3 2cu7_A KIAA1915 protein; nucle 99.5 2.5E-14 8.5E-19 112.3 8.6 54 58-111 7-60 (72)
4 2elk_A SPCC24B10.08C protein; 99.4 4E-13 1.4E-17 102.0 5.7 48 59-106 8-57 (58)
5 1x41_A Transcriptional adaptor 99.4 7.8E-13 2.7E-17 100.7 6.1 49 58-106 6-55 (60)
6 2iw5_B Protein corest, REST co 99.3 4.9E-13 1.7E-17 127.4 5.5 63 46-108 119-181 (235)
7 1guu_A C-MYB, MYB proto-oncoge 99.3 6.4E-12 2.2E-16 92.4 6.6 47 59-105 2-49 (52)
8 2xag_B REST corepressor 1; ami 99.2 4.4E-12 1.5E-16 131.1 5.5 61 49-109 369-429 (482)
9 1gvd_A MYB proto-oncogene prot 99.2 1.2E-11 4.2E-16 91.1 5.6 47 59-105 2-49 (52)
10 2d9a_A B-MYB, MYB-related prot 99.2 1.9E-11 6.4E-16 92.4 5.9 48 58-105 6-54 (60)
11 2cqr_A RSGI RUH-043, DNAJ homo 99.2 4.3E-11 1.5E-15 95.9 8.1 49 58-106 16-68 (73)
12 2din_A Cell division cycle 5-l 99.2 4.6E-11 1.6E-15 92.0 7.6 57 58-115 7-63 (66)
13 2eqr_A N-COR1, N-COR, nuclear 99.2 3.6E-11 1.2E-15 92.2 6.8 44 58-101 10-53 (61)
14 2cjj_A Radialis; plant develop 99.1 8E-11 2.7E-15 98.2 7.2 55 60-114 8-66 (93)
15 2ltp_A Nuclear receptor corepr 98.7 5.5E-12 1.9E-16 103.3 0.0 54 56-109 12-65 (89)
16 1w0t_A Telomeric repeat bindin 99.1 1.5E-10 5.2E-15 85.8 6.8 46 60-105 2-50 (53)
17 2dim_A Cell division cycle 5-l 99.1 1E-10 3.5E-15 91.0 5.8 48 58-105 7-55 (70)
18 1ity_A TRF1; helix-turn-helix, 99.1 2.3E-10 8E-15 88.9 7.4 51 57-107 7-60 (69)
19 1irz_A ARR10-B; helix-turn-hel 99.1 2.4E-10 8.3E-15 90.2 7.3 55 57-111 4-63 (64)
20 3sjm_A Telomeric repeat-bindin 99.0 4.1E-10 1.4E-14 87.5 7.0 48 58-105 9-59 (64)
21 2k9n_A MYB24; R2R3 domain, DNA 99.0 8.4E-10 2.9E-14 91.8 7.0 53 58-110 51-103 (107)
22 3zqc_A MYB3; transcription-DNA 98.9 1.1E-09 3.6E-14 94.1 6.1 52 58-109 52-103 (131)
23 3osg_A MYB21; transcription-DN 98.9 1.6E-09 5.3E-14 92.7 7.0 51 58-108 60-110 (126)
24 1gv2_A C-MYB, MYB proto-oncoge 98.9 9.9E-10 3.4E-14 90.4 5.4 49 58-106 54-102 (105)
25 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.9E-09 6.3E-14 86.1 6.7 49 59-108 7-59 (72)
26 2yqk_A Arginine-glutamic acid 98.9 1.9E-09 6.5E-14 83.5 6.2 47 59-108 8-55 (63)
27 3osg_A MYB21; transcription-DN 98.9 1.9E-09 6.6E-14 92.1 6.8 48 58-105 9-56 (126)
28 1gv2_A C-MYB, MYB proto-oncoge 98.9 1.9E-09 6.4E-14 88.8 5.6 47 59-105 3-50 (105)
29 1wgx_A KIAA1903 protein; MYB D 98.9 3.3E-09 1.1E-13 85.5 6.4 46 59-104 7-56 (73)
30 2llk_A Cyclin-D-binding MYB-li 98.9 3.3E-09 1.1E-13 85.1 6.2 46 56-102 19-64 (73)
31 2k9n_A MYB24; R2R3 domain, DNA 98.8 3.1E-09 1.1E-13 88.4 6.0 46 60-105 1-47 (107)
32 2crg_A Metastasis associated p 98.8 6.2E-09 2.1E-13 82.3 6.3 44 58-101 6-50 (70)
33 3zqc_A MYB3; transcription-DNA 98.8 4.9E-09 1.7E-13 90.0 5.5 46 60-105 2-48 (131)
34 1h8a_C AMV V-MYB, MYB transfor 98.8 3.4E-09 1.2E-13 90.3 4.3 47 58-104 77-123 (128)
35 1h8a_C AMV V-MYB, MYB transfor 98.8 6.9E-09 2.4E-13 88.4 5.8 48 58-105 25-73 (128)
36 2ckx_A NGTRF1, telomere bindin 98.7 2.6E-08 8.9E-13 81.5 6.9 48 61-108 1-53 (83)
37 2aje_A Telomere repeat-binding 98.6 4.3E-08 1.5E-12 83.6 6.5 51 57-107 10-65 (105)
38 2juh_A Telomere binding protei 98.6 5.9E-08 2E-12 84.6 7.3 55 54-108 11-70 (121)
39 1h89_C C-MYB, MYB proto-oncoge 98.6 1.8E-08 6E-13 88.6 3.9 47 58-104 108-154 (159)
40 2roh_A RTBP1, telomere binding 98.6 1.1E-07 3.6E-12 83.2 8.5 53 56-108 27-84 (122)
41 4a69_C Nuclear receptor corepr 98.6 4.9E-08 1.7E-12 81.1 5.8 44 58-101 41-84 (94)
42 4eef_G F-HB80.4, designed hema 98.6 5.4E-09 1.9E-13 84.8 -0.0 43 60-102 20-66 (74)
43 1h89_C C-MYB, MYB proto-oncoge 98.6 6.4E-08 2.2E-12 85.1 5.7 48 58-105 56-104 (159)
44 1x58_A Hypothetical protein 49 98.4 3.2E-07 1.1E-11 72.2 6.4 46 58-103 6-54 (62)
45 1ign_A Protein (RAP1); RAP1,ye 98.1 1.3E-06 4.4E-11 84.2 3.9 50 58-107 6-61 (246)
46 1ofc_X ISWI protein; nuclear p 97.3 0.00031 1.1E-08 69.4 6.5 48 61-108 111-159 (304)
47 1fex_A TRF2-interacting telome 97.1 0.00049 1.7E-08 52.9 4.9 46 60-105 2-57 (59)
48 2xag_B REST corepressor 1; ami 96.7 0.00025 8.5E-09 73.9 0.0 42 60-101 189-230 (482)
49 3hm5_A DNA methyltransferase 1 96.7 0.0043 1.5E-07 52.1 7.1 52 60-111 30-86 (93)
50 1ug2_A 2610100B20RIK gene prod 96.6 0.018 6.3E-07 48.7 10.4 50 60-109 33-85 (95)
51 1ofc_X ISWI protein; nuclear p 95.8 0.013 4.5E-07 57.9 6.8 54 59-112 211-280 (304)
52 4b4c_A Chromodomain-helicase-D 95.6 0.018 6.3E-07 51.9 6.1 53 59-111 6-63 (211)
53 2y9y_A Imitation switch protei 95.1 0.023 8E-07 57.6 5.9 49 60-108 123-173 (374)
54 2lr8_A CAsp8-associated protei 93.4 0.0075 2.6E-07 48.6 0.0 45 61-106 15-62 (70)
55 4b4c_A Chromodomain-helicase-D 93.2 0.27 9.2E-06 44.3 8.0 48 60-108 134-196 (211)
56 2ebi_A DNA binding protein GT- 93.1 0.12 4.1E-06 41.1 4.9 51 59-109 3-67 (86)
57 4iej_A DNA methyltransferase 1 92.2 0.38 1.3E-05 40.5 7.1 52 60-111 30-86 (93)
58 2hzd_A Transcriptional enhance 89.2 0.4 1.4E-05 39.6 4.4 47 58-104 4-71 (82)
59 1ig6_A MRF-2, modulator recogn 87.8 0.23 7.9E-06 41.2 2.2 47 81-132 56-107 (107)
60 1ign_A Protein (RAP1); RAP1,ye 87.5 0.97 3.3E-05 43.8 6.5 27 82-108 174-200 (246)
61 2xb0_X Chromo domain-containin 87.1 0.5 1.7E-05 45.9 4.4 26 61-86 169-195 (270)
62 2y9y_A Imitation switch protei 73.2 6 0.0002 40.3 6.7 54 60-113 228-297 (374)
63 2xb0_X Chromo domain-containin 73.0 7.5 0.00026 37.7 7.1 49 60-108 3-56 (270)
64 2cxy_A BAF250B subunit, HBAF25 66.6 10 0.00034 32.3 5.8 31 81-111 74-108 (125)
65 2lm1_A Lysine-specific demethy 55.3 33 0.0011 28.0 6.8 47 68-114 47-104 (107)
66 2li6_A SWI/SNF chromatin-remod 54.1 12 0.00041 31.4 4.0 30 81-110 72-101 (116)
67 2jxj_A Histone demethylase jar 52.5 15 0.00052 29.5 4.2 32 81-112 59-94 (96)
68 2eqy_A RBP2 like, jumonji, at 50.5 50 0.0017 27.9 7.4 35 81-115 65-103 (122)
69 2jrz_A Histone demethylase jar 48.1 23 0.00078 29.8 4.8 33 81-113 63-99 (117)
70 1kkx_A Transcription regulator 44.0 23 0.00078 30.3 4.2 32 81-112 71-102 (123)
71 2kk0_A AT-rich interactive dom 35.4 48 0.0017 28.9 5.0 35 81-115 87-126 (145)
72 1c20_A DEAD ringer protein; DN 35.3 53 0.0018 27.8 5.1 34 81-114 75-113 (128)
73 2rq5_A Protein jumonji; develo 34.9 38 0.0013 29.1 4.2 30 81-110 65-99 (121)
74 1fse_A GERE; helix-turn-helix 29.4 1.3E+02 0.0046 21.3 5.9 47 60-109 9-55 (74)
75 2o8x_A Probable RNA polymerase 29.4 1.1E+02 0.0038 21.6 5.4 48 62-111 15-62 (70)
76 1x3u_A Transcriptional regulat 24.4 1.4E+02 0.0049 21.6 5.3 45 62-109 16-60 (79)
77 1ntc_A Protein (nitrogen regul 23.9 59 0.002 25.6 3.3 30 64-93 49-79 (91)
78 3c57_A Two component transcrip 23.5 2E+02 0.0067 22.4 6.3 48 61-111 26-73 (95)
79 4a18_Q RPL36, 60S ribosomal pr 22.0 18 0.00063 31.0 -0.1 12 413-424 49-60 (104)
80 3izc_k 60S ribosomal protein R 21.6 19 0.00063 30.8 -0.1 12 413-424 48-59 (100)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.59 E-value=9.1e-16 Score=124.08 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=55.3
Q ss_pred CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 45 DFAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 45 ~~~~K~rKPytitk~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
.-+++.++++.....++.||+||+.+||+||++||.+|.+||++||+||+.||+.|+++|+
T Consensus 3 sg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 3 SGSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred CcccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 3455788888888889999999999999999999977999999999999999999998874
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=115.77 Aligned_cols=54 Identities=37% Similarity=0.673 Sum_probs=49.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC------cchHHHHhhcCCCCHHHHHHHHHHHHHHHhHh
Q 013548 58 KQRERWTEEEHKKFLEALKLFG------RAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yG------rgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~r~ 111 (441)
..++.||.||+++|+++|++|| ..|..||++|++||..||+.|+|+||.++.+.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999 56999999999999999999999999887654
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.52 E-value=2.5e-14 Score=112.34 Aligned_cols=54 Identities=35% Similarity=0.689 Sum_probs=50.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHhHh
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~r~ 111 (441)
.+++.||+||+++|++++++||..|..||.+|++||..||+.|+++||.+..+.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999999999999998654
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.38 E-value=4e-13 Score=102.01 Aligned_cols=48 Identities=27% Similarity=0.533 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-cchHHHHhhcC-CCCHHHHHHHHHHHHH
Q 013548 59 QRERWTEEEHKKFLEALKLFG-RAWRKIEEHVG-TKTAVQIRSHAQKFFS 106 (441)
Q Consensus 59 ~rg~WT~EEH~lFLeaLe~yG-rgWkkIAe~Vg-TRT~~QVrSHAQKYF~ 106 (441)
.++.||.||+.+|++++++|| ..|..||.+|| +||+.||+.|+++||.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 367899999999999999999 55999999999 9999999999999985
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=7.8e-13 Score=100.72 Aligned_cols=49 Identities=31% Similarity=0.529 Sum_probs=45.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-chHHHHhhcCCCCHHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGR-AWRKIEEHVGTKTAVQIRSHAQKFFS 106 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGr-gWkkIAe~VgTRT~~QVrSHAQKYF~ 106 (441)
..++.||.||+.+|++++++||. .|..||.+|++||+.||+.|+++|+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 45678999999999999999995 69999999999999999999999875
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.35 E-value=4.9e-13 Score=127.42 Aligned_cols=63 Identities=27% Similarity=0.476 Sum_probs=58.0
Q ss_pred CCCCCCCCcccccCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 013548 46 FAPKPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 46 ~~~K~rKPytitk~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl 108 (441)
...+.|+|+.+.+...+||+||+.+|++||.+||++|..||++|||||..||++||++|+.++
T Consensus 119 ~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 119 GIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp TTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred hcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 344667799999999999999999999999999999999999999999999999999998774
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.27 E-value=6.4e-12 Score=92.40 Aligned_cols=47 Identities=30% Similarity=0.529 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc-chHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 59 QRERWTEEEHKKFLEALKLFGR-AWRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 59 ~rg~WT~EEH~lFLeaLe~yGr-gWkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
+++.||.||+.+|++++++||. .|..||.+|++||+.||+.|+++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999 5999999999999999999999886
No 8
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.23 E-value=4.4e-12 Score=131.14 Aligned_cols=61 Identities=28% Similarity=0.515 Sum_probs=55.8
Q ss_pred CCCCCcccccCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 013548 49 KPRKPYTITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVV 109 (441)
Q Consensus 49 K~rKPytitk~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~ 109 (441)
..+.|+.+.+...+||++||.+|++||.+||++|..||++|||||..||++|+++|+.++.
T Consensus 369 ~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 369 PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp GGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred cccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Confidence 4566777888899999999999999999999999999999999999999999999887653
No 9
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.22 E-value=1.2e-11 Score=91.07 Aligned_cols=47 Identities=21% Similarity=0.544 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 59 QRERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 59 ~rg~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
.++.||.||+.+|++++++||.+ |..||.+|++||..||+.|+++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 46899999999999999999985 999999999999999999998875
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=1.9e-11 Score=92.44 Aligned_cols=48 Identities=21% Similarity=0.506 Sum_probs=44.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCc-chHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGR-AWRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGr-gWkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
..++.||.||+++|++++++||. .|..||.+|++||..||+.|+++|+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 45789999999999999999995 7999999999999999999998774
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=4.3e-11 Score=95.90 Aligned_cols=49 Identities=24% Similarity=0.404 Sum_probs=44.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC----cchHHHHhhcCCCCHHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFG----RAWRKIEEHVGTKTAVQIRSHAQKFFS 106 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yG----rgWkkIAe~VgTRT~~QVrSHAQKYF~ 106 (441)
..++.||.+|+.+|++||++|| ..|.+||.+||+||..||+.|++.+..
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999 459999999999999999999987643
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4.6e-11 Score=92.03 Aligned_cols=57 Identities=28% Similarity=0.520 Sum_probs=50.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHhHhcCCC
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNGC 115 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~r~~~G~ 115 (441)
..++.||.||+.+|+++++.||..|..||.++ .||..||+.|++.|+....+...|.
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHHHhChHhcCCCCC
Confidence 45789999999999999999999999999955 5999999999999999988776553
No 13
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=3.6e-11 Score=92.25 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=40.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHA 101 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHA 101 (441)
+....||++|+++|++||.+||++|..||.+|++||+.||+.|+
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999998764
No 14
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.13 E-value=8e-11 Score=98.24 Aligned_cols=55 Identities=20% Similarity=0.506 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCc----chHHHHhhcCCCCHHHHHHHHHHHHHHHhHhcCC
Q 013548 60 RERWTEEEHKKFLEALKLFGR----AWRKIEEHVGTKTAVQIRSHAQKFFSKVVRESNG 114 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGr----gWkkIAe~VgTRT~~QVrSHAQKYF~Kl~r~~~G 114 (441)
.+.||.||+.+|++||..||. .|.+||.+||+||..||+.|+++++.++.....|
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 568999999999999999974 4999999999999999999999999998777666
No 15
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.73 E-value=5.5e-12 Score=103.32 Aligned_cols=54 Identities=28% Similarity=0.365 Sum_probs=49.7
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 013548 56 ITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVV 109 (441)
Q Consensus 56 itk~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~ 109 (441)
....++.||.||+.+|++++.+||..|..||.+|++||..||+.|++.|+.++.
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 345678999999999999999999999999999999999999999999987764
No 16
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.10 E-value=1.5e-10 Score=85.81 Aligned_cols=46 Identities=26% Similarity=0.524 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHhhcC--CCCHHHHHHHHHHHH
Q 013548 60 RERWTEEEHKKFLEALKLFGR-AWRKIEEHVG--TKTAVQIRSHAQKFF 105 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGr-gWkkIAe~Vg--TRT~~QVrSHAQKYF 105 (441)
+++||.||+++|+++++.||. .|..||.+++ +||..||+.++..|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 679999999999999999995 5999999999 999999999998775
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1e-10 Score=91.03 Aligned_cols=48 Identities=19% Similarity=0.411 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-cchHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFG-RAWRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yG-rgWkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
.+++.||.||+++|++++++|| ..|..||.+|++||..||+.|++.|+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 4578999999999999999999 56999999999999999999998774
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.08 E-value=2.3e-10 Score=88.90 Aligned_cols=51 Identities=24% Similarity=0.491 Sum_probs=46.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-chHHHHhhcC--CCCHHHHHHHHHHHHHH
Q 013548 57 TKQRERWTEEEHKKFLEALKLFGR-AWRKIEEHVG--TKTAVQIRSHAQKFFSK 107 (441)
Q Consensus 57 tk~rg~WT~EEH~lFLeaLe~yGr-gWkkIAe~Vg--TRT~~QVrSHAQKYF~K 107 (441)
.+.++.||.||+.+|++++++||. .|..||.+++ +||..||+.++..|+..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 356889999999999999999995 5999999999 99999999999988654
No 19
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.07 E-value=2.4e-10 Score=90.23 Aligned_cols=55 Identities=35% Similarity=0.451 Sum_probs=49.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcc---hHHHHhhcC--CCCHHHHHHHHHHHHHHHhHh
Q 013548 57 TKQRERWTEEEHKKFLEALKLFGRA---WRKIEEHVG--TKTAVQIRSHAQKFFSKVVRE 111 (441)
Q Consensus 57 tk~rg~WT~EEH~lFLeaLe~yGrg---WkkIAe~Vg--TRT~~QVrSHAQKYF~Kl~r~ 111 (441)
.+.+..||+|.|.+|++|++++|.+ |+.|.++++ +.|..||+||.|||+.+++|.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 3567899999999999999999965 899998765 679999999999999999864
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.03 E-value=4.1e-10 Score=87.55 Aligned_cols=48 Identities=23% Similarity=0.502 Sum_probs=42.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcC--CCCHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRA-WRKIEEHVG--TKTAVQIRSHAQKFF 105 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrg-WkkIAe~Vg--TRT~~QVrSHAQKYF 105 (441)
.++++||+||+++|++++++||.+ |..||++++ +||..||+.++..+.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999975 999999876 999999999998763
No 21
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.97 E-value=8.4e-10 Score=91.80 Aligned_cols=53 Identities=17% Similarity=0.363 Sum_probs=48.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHhH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~r 110 (441)
..+++||.||+.+|++++..||..|..||.+|++||..||+.|+..+..++.+
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred ccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 35789999999999999999999999999999999999999999988777654
No 22
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.92 E-value=1.1e-09 Score=94.11 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=47.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVV 109 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~ 109 (441)
..++.||.||+.+|++++..||..|..||.+|++||..||+.|+..++.+..
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999999988876543
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.92 E-value=1.6e-09 Score=92.68 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=47.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl 108 (441)
.+++.||.||+.+|++++.+||..|..||.+|++||..||+.|+..+..++
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999999998777665
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.92 E-value=9.9e-10 Score=90.41 Aligned_cols=49 Identities=27% Similarity=0.497 Sum_probs=45.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFS 106 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~ 106 (441)
..++.||.||+.+|++++.+||..|..||.+|++||..||+.|+..+..
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999999999999986643
No 25
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.91 E-value=1.9e-09 Score=86.12 Aligned_cols=49 Identities=20% Similarity=0.485 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc----chHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 013548 59 QRERWTEEEHKKFLEALKLFGR----AWRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 59 ~rg~WT~EEH~lFLeaLe~yGr----gWkkIAe~VgTRT~~QVrSHAQKYF~Kl 108 (441)
..+.||.||+++|.+||.+|+. .|.+||+++ .||..||+.||+++...+
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 4568999999999999999984 399999999 599999999998875553
No 26
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.9e-09 Score=83.47 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcchHHHHh-hcCCCCHHHHHHHHHHHHHHH
Q 013548 59 QRERWTEEEHKKFLEALKLFGRAWRKIEE-HVGTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 59 ~rg~WT~EEH~lFLeaLe~yGrgWkkIAe-~VgTRT~~QVrSHAQKYF~Kl 108 (441)
....||+||+.+|++||.+||++|..|+. +|++||..||..+ ||...
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f---YY~wK 55 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITF---YYYWK 55 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHH---HHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHH---Hhccc
Confidence 35789999999999999999999999998 6999999999755 45444
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.90 E-value=1.9e-09 Score=92.09 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=45.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
..++.||.||+++|++++++||.+|..||.++++||..||+.|+.+|+
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 567899999999999999999999999999999999999999999875
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.87 E-value=1.9e-09 Score=88.77 Aligned_cols=47 Identities=21% Similarity=0.531 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 59 QRERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 59 ~rg~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
.++.||.||+.+|+++++.||.+ |..||.+|++||+.||+.|+++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 46899999999999999999985 999999999999999999998774
No 29
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86 E-value=3.3e-09 Score=85.49 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc----hHHHHhhcCCCCHHHHHHHHHHH
Q 013548 59 QRERWTEEEHKKFLEALKLFGRA----WRKIEEHVGTKTAVQIRSHAQKF 104 (441)
Q Consensus 59 ~rg~WT~EEH~lFLeaLe~yGrg----WkkIAe~VgTRT~~QVrSHAQKY 104 (441)
....||.+|+++|++||..|+++ |.+||++||+||+.||+.|++..
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34689999999999999999973 99999999999999999998754
No 30
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.85 E-value=3.3e-09 Score=85.05 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=42.9
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHH
Q 013548 56 ITKQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQ 102 (441)
Q Consensus 56 itk~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQ 102 (441)
...+++.||+||++++++++++||..|..||.++ +||..||+.++.
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 3456889999999999999999999999999999 999999999986
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.84 E-value=3.1e-09 Score=88.37 Aligned_cols=46 Identities=24% Similarity=0.454 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 60 RERWTEEEHKKFLEALKLFGR-AWRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGr-gWkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
++.||.||+++|+++++.||. .|..||.+|++||+.||+.|+.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 468999999999999999997 5999999999999999999998774
No 32
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.81 E-value=6.2e-09 Score=82.31 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=40.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHh-hcCCCCHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEE-HVGTKTAVQIRSHA 101 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe-~VgTRT~~QVrSHA 101 (441)
+....||++|+.+|++||.+||++|..|+. +|++||..||..|+
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 456799999999999999999999999998 69999999998775
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.78 E-value=4.9e-09 Score=89.96 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 60 RERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
+++||.||+++|+++++.||.+ |..||.+|++||+.||+.|++.|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 5799999999999999999955 999999999999999999999875
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.78 E-value=3.4e-09 Score=90.34 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKF 104 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKY 104 (441)
..++.||.||+.+|++++.+||..|..||.+|++||..||+.|+..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998754
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.76 E-value=6.9e-09 Score=88.43 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
..++.||.||+++|+++++.||.+ |..||.++++||..||+.|+++|+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 457899999999999999999975 999999999999999999998764
No 36
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.70 E-value=2.6e-08 Score=81.50 Aligned_cols=48 Identities=17% Similarity=0.425 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHhCcc-hHHHHhh----cCCCCHHHHHHHHHHHHHHH
Q 013548 61 ERWTEEEHKKFLEALKLFGRA-WRKIEEH----VGTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 61 g~WT~EEH~lFLeaLe~yGrg-WkkIAe~----VgTRT~~QVrSHAQKYF~Kl 108 (441)
.+||.||++.|++|+++||.| |+.|+.. +++||..||+.++..++.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 379999999999999999996 9999974 88999999999999887654
No 37
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.63 E-value=4.3e-08 Score=83.60 Aligned_cols=51 Identities=16% Similarity=0.403 Sum_probs=45.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhc----CCCCHHHHHHHHHHHHHH
Q 013548 57 TKQRERWTEEEHKKFLEALKLFGRA-WRKIEEHV----GTKTAVQIRSHAQKFFSK 107 (441)
Q Consensus 57 tk~rg~WT~EEH~lFLeaLe~yGrg-WkkIAe~V----gTRT~~QVrSHAQKYF~K 107 (441)
.+.+.+||.||++.|++|+++||.+ |+.|+... ..||..||+.++..++.+
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3567899999999999999999996 99999754 799999999999887654
No 38
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.62 E-value=5.9e-08 Score=84.65 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=48.2
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhc----CCCCHHHHHHHHHHHHHHH
Q 013548 54 YTITKQRERWTEEEHKKFLEALKLFGRA-WRKIEEHV----GTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 54 ytitk~rg~WT~EEH~lFLeaLe~yGrg-WkkIAe~V----gTRT~~QVrSHAQKYF~Kl 108 (441)
....+.+++||.||++.+++|+++||.+ |..|+.+. ..||..||+.++..++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 3455778999999999999999999996 99999874 7999999999999887654
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.61 E-value=1.8e-08 Score=88.61 Aligned_cols=47 Identities=28% Similarity=0.508 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKF 104 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKY 104 (441)
..++.||.||+.+|++++.+||..|..||.+|++||..||+.|+..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998754
No 40
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.61 E-value=1.1e-07 Score=83.18 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=46.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhc----CCCCHHHHHHHHHHHHHHH
Q 013548 56 ITKQRERWTEEEHKKFLEALKLFGRA-WRKIEEHV----GTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 56 itk~rg~WT~EEH~lFLeaLe~yGrg-WkkIAe~V----gTRT~~QVrSHAQKYF~Kl 108 (441)
..+.+++||.||++.+++|+++||.+ |..|+.+. ..||..||+.++..++..-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34668899999999999999999996 99999753 7999999999999887654
No 41
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.59 E-value=4.9e-08 Score=81.14 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=40.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHA 101 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHA 101 (441)
+....||++||++|.+|+.+||++|.+||.+|++||..||..|+
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 34679999999999999999999999999999999999998765
No 42
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.59 E-value=5.4e-09 Score=84.78 Aligned_cols=43 Identities=23% Similarity=0.486 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc----hHHHHhhcCCCCHHHHHHHHH
Q 013548 60 RERWTEEEHKKFLEALKLFGRA----WRKIEEHVGTKTAVQIRSHAQ 102 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGrg----WkkIAe~VgTRT~~QVrSHAQ 102 (441)
...||.+|+++|..||..|+++ |.+||+.||+||+.||+.|||
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999984 999999999999999999997
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.55 E-value=6.4e-08 Score=85.06 Aligned_cols=48 Identities=21% Similarity=0.505 Sum_probs=44.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVrSHAQKYF 105 (441)
..++.||.||+.+|+++++.||.. |..||.++++||..||+.|++.|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 357899999999999999999975 999999999999999999998774
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.44 E-value=3.2e-07 Score=72.18 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=41.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcchHHHH---hhcCCCCHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRAWRKIE---EHVGTKTAVQIRSHAQK 103 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrgWkkIA---e~VgTRT~~QVrSHAQK 103 (441)
.++.+||+||.+.+++|+++||..|++|+ .|+..||.+.++..+..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~ 54 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHR 54 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHH
Confidence 46789999999999999999999999999 48889999999987753
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.11 E-value=1.3e-06 Score=84.15 Aligned_cols=50 Identities=22% Similarity=0.356 Sum_probs=44.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc------hHHHHhhcCCCCHHHHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRA------WRKIEEHVGTKTAVQIRSHAQKFFSK 107 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrg------WkkIAe~VgTRT~~QVrSHAQKYF~K 107 (441)
..++.||.||++.+|+++++||.. |..||.++++||..|||.|+..|+.+
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 346799999999999999999875 99999999999999999999988654
No 46
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.28 E-value=0.00031 Score=69.36 Aligned_cols=48 Identities=23% Similarity=0.485 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHhCcc-hHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 013548 61 ERWTEEEHKKFLEALKLFGRA-WRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 61 g~WT~EEH~lFLeaLe~yGrg-WkkIAe~VgTRT~~QVrSHAQKYF~Kl 108 (441)
+.||..+-..|+.|+++||++ |..||..|++||+.+|+.|++-|+.+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 479999999999999999998 999999999999999999999888776
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.14 E-value=0.00049 Score=52.85 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------Ccc-hHHHHh-hcCCCCHHHHHHHHHHHH
Q 013548 60 RERWTEEEHKKFLEALKLF--------GRA-WRKIEE-HVGTKTAVQIRSHAQKFF 105 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~y--------Grg-WkkIAe-~VgTRT~~QVrSHAQKYF 105 (441)
+..||+||+..+++-|..| |.. |+.||+ .++.+|-.++|.|+-|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999 555 999999 899999999999998864
No 48
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.71 E-value=0.00025 Score=73.85 Aligned_cols=42 Identities=19% Similarity=0.464 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHH
Q 013548 60 RERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHA 101 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHA 101 (441)
...||.+|+.+|.+||.+||++|..|+.+|++||..+|..|+
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 458999999999999999999999999999999999998765
No 49
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.66 E-value=0.0043 Score=52.06 Aligned_cols=52 Identities=12% Similarity=0.315 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHhhc-----CCCCHHHHHHHHHHHHHHHhHh
Q 013548 60 RERWTEEEHKKFLEALKLFGRAWRKIEEHV-----GTKTAVQIRSHAQKFFSKVVRE 111 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGrgWkkIAe~V-----gTRT~~QVrSHAQKYF~Kl~r~ 111 (441)
...||.||...+++.+++||..|-.|+... +.||..+|+.++-..-.++.+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999766 5799999999987776677654
No 50
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.58 E-value=0.018 Score=48.65 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---chHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 013548 60 RERWTEEEHKKFLEALKLFGR---AWRKIEEHVGTKTAVQIRSHAQKFFSKVV 109 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGr---gWkkIAe~VgTRT~~QVrSHAQKYF~Kl~ 109 (441)
-.-||.||++-.|.+.++-|. .|..||..+|.|++.||..++|....=++
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 458999999999999999997 49999999999999999999997654443
No 51
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.84 E-value=0.013 Score=57.88 Aligned_cols=54 Identities=17% Similarity=0.362 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc---c-hHHHH------------hhcCCCCHHHHHHHHHHHHHHHhHhc
Q 013548 59 QRERWTEEEHKKFLEALKLFGR---A-WRKIE------------EHVGTKTAVQIRSHAQKFFSKVVRES 112 (441)
Q Consensus 59 ~rg~WT~EEH~lFLeaLe~yGr---g-WkkIA------------e~VgTRT~~QVrSHAQKYF~Kl~r~~ 112 (441)
+.-.||++||..||-+|-+||. + |..|- -||-+||+.+|..|++-...-+.|+.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE~ 280 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIEREN 280 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999999 7 99996 27889999999999998777777764
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.56 E-value=0.018 Score=51.93 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--cc-hHHHHhh--cCCCCHHHHHHHHHHHHHHHhHh
Q 013548 59 QRERWTEEEHKKFLEALKLFG--RA-WRKIEEH--VGTKTAVQIRSHAQKFFSKVVRE 111 (441)
Q Consensus 59 ~rg~WT~EEH~lFLeaLe~yG--rg-WkkIAe~--VgTRT~~QVrSHAQKYF~Kl~r~ 111 (441)
....||+.|-..|+.|+.+|| .+ |..|++. +..||...|+.+++.|.....+.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~ 63 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKA 63 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999 45 9999864 56899999999999887776553
No 53
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.15 E-value=0.023 Score=57.64 Aligned_cols=49 Identities=27% Similarity=0.522 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHhhcC-CCCHHHHHHHHHHHHHHH
Q 013548 60 RERWTEEEHKKFLEALKLFGRA-WRKIEEHVG-TKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGrg-WkkIAe~Vg-TRT~~QVrSHAQKYF~Kl 108 (441)
-+.||..+=..|+.|+++||++ -..||..|+ +||+.+|+.+++-|+.+.
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999998 999999998 999999999999887765
No 54
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.37 E-value=0.0075 Score=48.61 Aligned_cols=45 Identities=16% Similarity=0.300 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCc---chHHHHhhcCCCCHHHHHHHHHHHHH
Q 013548 61 ERWTEEEHKKFLEALKLFGR---AWRKIEEHVGTKTAVQIRSHAQKFFS 106 (441)
Q Consensus 61 g~WT~EEH~lFLeaLe~yGr---gWkkIAe~VgTRT~~QVrSHAQKYF~ 106 (441)
..||.||++-.|.+.++-|. .|..||..+ .||+.||..++|....
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 47999999999999999998 599999988 8999999999987543
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.20 E-value=0.27 Score=44.31 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-hHHHHh--h------------cCCCCHHHHHHHHHHHHHHH
Q 013548 60 RERWTEEEHKKFLEALKLFGRA-WRKIEE--H------------VGTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGrg-WkkIAe--~------------VgTRT~~QVrSHAQKYF~Kl 108 (441)
...||.+|+..||.|+.+||.| |..|-. - ..++++..+..+|. |+.++
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHH
Confidence 4579999999999999999998 999963 1 12456778888886 44443
No 56
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=93.05 E-value=0.12 Score=41.12 Aligned_cols=51 Identities=10% Similarity=0.331 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-------c---chHHHHhhcC----CCCHHHHHHHHHHHHHHHh
Q 013548 59 QRERWTEEEHKKFLEALKLFG-------R---AWRKIEEHVG----TKTAVQIRSHAQKFFSKVV 109 (441)
Q Consensus 59 ~rg~WT~EEH~lFLeaLe~yG-------r---gWkkIAe~Vg----TRT~~QVrSHAQKYF~Kl~ 109 (441)
....||.+|-.+||++..... . -|..||+.+. .||+.||+..+......-+
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999997532 1 2999996543 7999999998876555543
No 57
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.19 E-value=0.38 Score=40.45 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHh-hc----CCCCHHHHHHHHHHHHHHHhHh
Q 013548 60 RERWTEEEHKKFLEALKLFGRAWRKIEE-HV----GTKTAVQIRSHAQKFFSKVVRE 111 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGrgWkkIAe-~V----gTRT~~QVrSHAQKYF~Kl~r~ 111 (441)
...||.||-..|++..+.|+-.|--|++ +- +.||..+++.++=..-.+|.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999995 33 3799999999998777777654
No 58
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=89.18 E-value=0.4 Score=39.59 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=36.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCcc--h--------------HHHHhhcC-----CCCHHHHHHHHHHH
Q 013548 58 KQRERWTEEEHKKFLEALKLFGRA--W--------------RKIEEHVG-----TKTAVQIRSHAQKF 104 (441)
Q Consensus 58 k~rg~WT~EEH~lFLeaLe~yGrg--W--------------kkIAe~Vg-----TRT~~QVrSHAQKY 104 (441)
+..+.|.++=+..|++||+.|... | .-|++||- .||..||-||-|-.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvl 71 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL 71 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHH
Confidence 456799999999999999999532 1 12444443 79999999999954
No 59
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=87.77 E-value=0.23 Score=41.20 Aligned_cols=47 Identities=28% Similarity=0.553 Sum_probs=32.3
Q ss_pred chHHHHhhcC-----CCCHHHHHHHHHHHHHHHhHhcCCCCCCCCccccCCCCCCCC
Q 013548 81 AWRKIEEHVG-----TKTAVQIRSHAQKFFSKVVRESNGCSTSPVEPVEIPPPRPKR 132 (441)
Q Consensus 81 gWkkIAe~Vg-----TRT~~QVrSHAQKYF~Kl~r~~~G~~~~~~~~i~IPpprpKR 132 (441)
.|+.||+.+| +-...+++.|+++|+...++.-.|. .+..||+..|++
T Consensus 56 ~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~-----~~~~~p~~~~~~ 107 (107)
T 1ig6_A 56 QWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGE-----EDKPLPPIKPRK 107 (107)
T ss_dssp THHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHH-----TSSSSCTTCSCC
T ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCCCCCCCC
Confidence 4999998776 2235799999999876655443332 145788877764
No 60
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=87.48 E-value=0.97 Score=43.77 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=24.9
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 013548 82 WRKIEEHVGTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 82 WkkIAe~VgTRT~~QVrSHAQKYF~Kl 108 (441)
|+.||++.+.+|...+|.++.||..+.
T Consensus 174 fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 174 FKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 999999999999999999999877654
No 61
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.14 E-value=0.5 Score=45.93 Aligned_cols=26 Identities=35% Similarity=0.781 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcc-hHHHH
Q 013548 61 ERWTEEEHKKFLEALKLFGRA-WRKIE 86 (441)
Q Consensus 61 g~WT~EEH~lFLeaLe~yGrg-WkkIA 86 (441)
-.|+.+|+..||.|+-+||.| |.+|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 469999999999999999999 99996
No 62
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=73.21 E-value=6 Score=40.29 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---c-hHHHHh------------hcCCCCHHHHHHHHHHHHHHHhHhcC
Q 013548 60 RERWTEEEHKKFLEALKLFGR---A-WRKIEE------------HVGTKTAVQIRSHAQKFFSKVVRESN 113 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGr---g-WkkIAe------------~VgTRT~~QVrSHAQKYF~Kl~r~~~ 113 (441)
...||++|+..+|-+|-+||- + |..|-. |+.+||+..|.-|+.-...-+.|+..
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEFN 297 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 447999999999999999998 7 999931 37799999999999877777777654
No 63
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=72.96 E-value=7.5 Score=37.74 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---chHHHHh--hcCCCCHHHHHHHHHHHHHHH
Q 013548 60 RERWTEEEHKKFLEALKLFGR---AWRKIEE--HVGTKTAVQIRSHAQKFFSKV 108 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGr---gWkkIAe--~VgTRT~~QVrSHAQKYF~Kl 108 (441)
++.||+.|-.+|+++|.+||. .|..|++ -+..|+...|+.-++-.....
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 467999999999999999994 4999973 567899998888777655443
No 64
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=66.60 E-value=10 Score=32.28 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=24.9
Q ss_pred chHHHHhhcCCCC----HHHHHHHHHHHHHHHhHh
Q 013548 81 AWRKIEEHVGTKT----AVQIRSHAQKFFSKVVRE 111 (441)
Q Consensus 81 gWkkIAe~VgTRT----~~QVrSHAQKYF~Kl~r~ 111 (441)
.|+.||+.+|--+ ..+++.|+.||+...++.
T Consensus 74 ~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 74 KWRELATNLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp CHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4999998776433 579999999998887765
No 65
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=55.32 E-value=33 Score=28.00 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhC-------cchHHHHhhcCCCC----HHHHHHHHHHHHHHHhHhcCC
Q 013548 68 HKKFLEALKLFG-------RAWRKIEEHVGTKT----AVQIRSHAQKFFSKVVRESNG 114 (441)
Q Consensus 68 H~lFLeaLe~yG-------rgWkkIAe~VgTRT----~~QVrSHAQKYF~Kl~r~~~G 114 (441)
+.+|..-.+.=| +.|+.|+..+|--. ..+++.|+.||....++...|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~~ 104 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTSG 104 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 455555444333 24999998777433 579999999998887765444
No 66
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=54.05 E-value=12 Score=31.39 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=25.0
Q ss_pred chHHHHhhcCCCCHHHHHHHHHHHHHHHhH
Q 013548 81 AWRKIEEHVGTKTAVQIRSHAQKFFSKVVR 110 (441)
Q Consensus 81 gWkkIAe~VgTRT~~QVrSHAQKYF~Kl~r 110 (441)
.|+.||+.+|-....+++.|+.||+...++
T Consensus 72 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 72 QWSMVAQRLQISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp CHHHHHHHHTSCCTTHHHHHHHHHHSHHHH
T ss_pred cHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 499999988866689999999999776554
No 67
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=52.47 E-value=15 Score=29.49 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=24.2
Q ss_pred chHHHHhhcCCC----CHHHHHHHHHHHHHHHhHhc
Q 013548 81 AWRKIEEHVGTK----TAVQIRSHAQKFFSKVVRES 112 (441)
Q Consensus 81 gWkkIAe~VgTR----T~~QVrSHAQKYF~Kl~r~~ 112 (441)
.|++|++.+|-- ...+++.|++||+...++..
T Consensus 59 ~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 59 KWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQ 94 (96)
T ss_dssp THHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHHHH
T ss_pred cHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHHHh
Confidence 499999877632 26799999999987766543
No 68
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.53 E-value=50 Score=27.92 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=26.7
Q ss_pred chHHHHhhcCCCC----HHHHHHHHHHHHHHHhHhcCCC
Q 013548 81 AWRKIEEHVGTKT----AVQIRSHAQKFFSKVVRESNGC 115 (441)
Q Consensus 81 gWkkIAe~VgTRT----~~QVrSHAQKYF~Kl~r~~~G~ 115 (441)
.|+.|++.+|-.. ..++|.|++||+...++...|.
T Consensus 65 ~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~~ 103 (122)
T 2eqy_A 65 KWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSGD 103 (122)
T ss_dssp THHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHCC
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhcC
Confidence 4999998776422 4799999999998887765553
No 69
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=48.14 E-value=23 Score=29.79 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=25.3
Q ss_pred chHHHHhhcCCCC----HHHHHHHHHHHHHHHhHhcC
Q 013548 81 AWRKIEEHVGTKT----AVQIRSHAQKFFSKVVRESN 113 (441)
Q Consensus 81 gWkkIAe~VgTRT----~~QVrSHAQKYF~Kl~r~~~ 113 (441)
.|+.|+..+|--. ..+++.|++||+...++...
T Consensus 63 ~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~~~ 99 (117)
T 2jrz_A 63 RWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQS 99 (117)
T ss_dssp THHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 4999998776432 67999999999877765543
No 70
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.00 E-value=23 Score=30.31 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=27.2
Q ss_pred chHHHHhhcCCCCHHHHHHHHHHHHHHHhHhc
Q 013548 81 AWRKIEEHVGTKTAVQIRSHAQKFFSKVVRES 112 (441)
Q Consensus 81 gWkkIAe~VgTRT~~QVrSHAQKYF~Kl~r~~ 112 (441)
.|+.|++-+|--...+++.|+.||+...++--
T Consensus 71 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~~ 102 (123)
T 1kkx_A 71 QWSMVAQRLQISDYQQLESIYFRILLPYERHM 102 (123)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHCCChHHHHHHHHHHHHHHHHHHH
Confidence 39999988886669999999999998887643
No 71
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=35.43 E-value=48 Score=28.88 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=27.0
Q ss_pred chHHHHhhcCC-----CCHHHHHHHHHHHHHHHhHhcCCC
Q 013548 81 AWRKIEEHVGT-----KTAVQIRSHAQKFFSKVVRESNGC 115 (441)
Q Consensus 81 gWkkIAe~VgT-----RT~~QVrSHAQKYF~Kl~r~~~G~ 115 (441)
.|+.|++.+|- -...+++.|++||+...+....|.
T Consensus 87 ~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~ 126 (145)
T 2kk0_A 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGL 126 (145)
T ss_dssp CHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCC
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 49999987763 236799999999988877766553
No 72
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=35.25 E-value=53 Score=27.85 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=26.3
Q ss_pred chHHHHhhcCC-----CCHHHHHHHHHHHHHHHhHhcCC
Q 013548 81 AWRKIEEHVGT-----KTAVQIRSHAQKFFSKVVRESNG 114 (441)
Q Consensus 81 gWkkIAe~VgT-----RT~~QVrSHAQKYF~Kl~r~~~G 114 (441)
.|+.|++.+|- -...+++.|+.+|+...++...|
T Consensus 75 ~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~ 113 (128)
T 1c20_A 75 LWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKN 113 (128)
T ss_dssp THHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHC
T ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 49999987772 23689999999998887766544
No 73
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=34.90 E-value=38 Score=29.05 Aligned_cols=30 Identities=7% Similarity=0.267 Sum_probs=23.3
Q ss_pred chHHHHhhcCC-----CCHHHHHHHHHHHHHHHhH
Q 013548 81 AWRKIEEHVGT-----KTAVQIRSHAQKFFSKVVR 110 (441)
Q Consensus 81 gWkkIAe~VgT-----RT~~QVrSHAQKYF~Kl~r 110 (441)
.|+.||..+|- -...+++.|+.||+.....
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 49999987762 2367999999999887654
No 74
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=29.43 E-value=1.3e+02 Score=21.34 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 013548 60 RERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVV 109 (441)
Q Consensus 60 rg~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~ 109 (441)
...+|+.|.+.|.. + ..|...+.||+.+|- +..-|+.|-..-+.++.
T Consensus 9 ~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHC
Confidence 35688888887766 4 567779999998875 77888888888777774
No 75
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=29.40 E-value=1.1e+02 Score=21.56 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHhHh
Q 013548 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111 (441)
Q Consensus 62 ~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~r~ 111 (441)
.+++.+...|.. .-..|..++.||+.+|- +...|+.+-.+-..++.+.
T Consensus 15 ~L~~~~r~il~l-~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLL-TQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHH-HHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHH-HHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHHH
Confidence 466666666553 22457779999998864 7777887777777777543
No 76
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=24.39 E-value=1.4e+02 Score=21.61 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 013548 62 RWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVV 109 (441)
Q Consensus 62 ~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~ 109 (441)
..|+.|.+.|.. + ..|...+.||+.+|- +...|+.|-..-+.++.
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 467777777665 4 567779999998764 77888888888777774
No 77
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.93 E-value=59 Score=25.60 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHhCcchHHHHhhcC-CCC
Q 013548 64 TEEEHKKFLEALKLFGRAWRKIEEHVG-TKT 93 (441)
Q Consensus 64 T~EEH~lFLeaLe~yGrgWkkIAe~Vg-TRT 93 (441)
..-|...+.++|+.+|....+.|+.+| +|+
T Consensus 49 ~~~E~~~i~~aL~~~~gn~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 49 PELERTLLTTALRHTQGHKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHCcCHH
Confidence 345788899999999988999999887 444
No 78
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=23.48 E-value=2e+02 Score=22.44 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHhhcCCCCHHHHHHHHHHHHHHHhHh
Q 013548 61 ERWTEEEHKKFLEALKLFGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVVRE 111 (441)
Q Consensus 61 g~WT~EEH~lFLeaLe~yGrgWkkIAe~VgTRT~~QVrSHAQKYF~Kl~r~ 111 (441)
...|+.|.+.|.. + ..|..-+.||+.+|- +..-|+.|-..-+.|+...
T Consensus 26 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 4678888888777 4 778889999998865 8888999999888888543
No 79
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=21.98 E-value=18 Score=31.03 Aligned_cols=12 Identities=67% Similarity=1.359 Sum_probs=10.1
Q ss_pred cCcccccchhhh
Q 013548 413 KGFVPYKKRIVE 424 (441)
Q Consensus 413 KGFVPYKRclaE 424 (441)
=||-||.||+-|
T Consensus 49 ~GfaPYErR~mE 60 (104)
T 4a18_Q 49 TGFAPYEKRIIE 60 (104)
T ss_dssp HCCCHHHHHHHH
T ss_pred hcCchhHHHHHH
Confidence 499999888876
No 80
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=21.59 E-value=19 Score=30.79 Aligned_cols=12 Identities=33% Similarity=1.104 Sum_probs=10.1
Q ss_pred cCcccccchhhh
Q 013548 413 KGFVPYKKRIVE 424 (441)
Q Consensus 413 KGFVPYKRclaE 424 (441)
=||-||.||+-|
T Consensus 48 ~GfaPYErr~mE 59 (100)
T 3izc_k 48 AGLSPYERRLID 59 (100)
T ss_dssp HHHTTSCCHHHH
T ss_pred hcCchhHHHHHH
Confidence 499999988876
Done!