BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>013549
MRTVFKLSRLATTVSGINRLPGPTSHEPCLLSASTLPPPRRLVHDANGNGNRINGLNSNP
VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE
SGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK
PENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATR
NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE
EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA
PPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVSLAEA
LNFSEPSNKPLVIDARTSRTM

High Scoring Gene Products

Symbol, full name Information P value
NDP1
AT5G02130 		protein from Arabidopsis thaliana 4.4e-116

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  013549
        (441 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2185208 - symbol:NDP1 "AT5G02130" species:3702...  1144  4.4e-116  1


>TAIR|locus:2185208 [details] [associations]
            symbol:NDP1 "AT5G02130" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009688 "abscisic acid
            biosynthetic process" evidence=RCA] InterPro:IPR011990
            EMBL:CP002688 Gene3D:1.25.40.10 EMBL:AL162508 UniGene:At.23559
            EMBL:BT025628 IPI:IPI00536004 PIR:T48234 RefSeq:NP_195833.1
            UniGene:At.33457 ProteinModelPortal:Q9LZL9 SMR:Q9LZL9 PRIDE:Q9LZL9
            EnsemblPlants:AT5G02130.1 GeneID:831694 KEGG:ath:AT5G02130
            TAIR:At5g02130 InParanoid:Q9LZL9 OMA:SYGEFLH PhylomeDB:Q9LZL9
            ProtClustDB:CLSN2687310 Genevestigator:Q9LZL9 Uniprot:Q9LZL9
        Length = 420

 Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
 Identities = 234/403 (58%), Positives = 300/403 (74%)

Query:    39 PRRLVHDANGNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPS 98
             P RL+H        I+  N+N V +QM+NYALSHARSQKSDESY+QGMLVLEQCL  QP+
Sbjct:    33 PLRLIH------GEISVPNANHVAIQMVNYALSHARSQKSDESYAQGMLVLEQCLGNQPN 86

Query:    99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158
             D Q++   +   LLAMS LLYESGN  EAIE+L++V    +S L +RV A+EAL GL +Q
Sbjct:    87 DDQVSHDSKATVLLAMSDLLYESGNSSEAIERLKQVMTLTHSSLAIRVVAVEALVGLLIQ 146

Query:   159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218
              GQDD S  VAD+ L+L ++   EN +  G V +   A+KGL EL  GN+ESAES F+GL
Sbjct:   147 SGQDDASLDVADEFLKLVKESGHENLQ--GVV-ATVKAIKGLAELVKGNIESAESLFRGL 203

Query:   219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278
             +  E C G+ ALSYGEYLHAT NF LAK+ YQK I+ + E K+     ++ SCNM L+ V
Sbjct:   204 ENHESCKGNIALSYGEYLHATGNFELAKEMYQKAIQGVTETKE-----SMCSCNMNLKAV 258

Query:   279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338
             +LAATFALGQLE+H+GNFG AE+ LT  LTKTEE +G +HPKVGV+LT +ALM+ NKA Q
Sbjct:   259 SLAATFALGQLESHIGNFGVAEKTLTDALTKTEEHYGDNHPKVGVILTAVALMYGNKAKQ 318

Query:   339 EHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDE 398
             E SS++LIQEGLYR+ALE +KAPPL+S+G+   ++  +++ALAR GYAE L +Q+NRK E
Sbjct:   319 ERSSSILIQEGLYRKALELMKAPPLDSKGI-INMENQEVIALARAGYAELLLIQENRKSE 377

Query:   399 GERMKRWAEAAWRNRRVSLAEALNFSEPSNKPLVIDARTSRTM 441
             GE+MK WAE+AWRN+R+SL+EAL  SEP  K  +IDART+R +
Sbjct:   378 GEKMKSWAESAWRNKRISLSEALTLSEPLGKVAIIDARTTRVL 420


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      441       441   0.00089  118 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  251 KB (2135 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.83u 0.25s 39.08t   Elapsed:  00:00:02
  Total cpu time:  38.83u 0.25s 39.08t   Elapsed:  00:00:02
  Start:  Sat May 11 03:02:58 2013   End:  Sat May 11 03:03:00 2013

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