BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013549
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 279 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337
A+AAT L L G + +AE + R L E++ G HP V L+ LAL+ +N+
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGK 142
Query: 338 QEHSSALLIQEGLYRRALEF 357
E E YRRALE
Sbjct: 143 AEEV------EYYYRRALEI 156
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356
G A + + L E+ G HP V +L LAL++R++ + +A L+ + L R
Sbjct: 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK-EAAHLLNDALAIREKT 76
Query: 357 FLKAPPLESEGVETKVDRTDIVALARGGYAEA 388
K P V ++ ++ RG Y EA
Sbjct: 77 LGKDHP----AVAATLNNLAVLYGKRGKYKEA 104
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 279 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337
A+AAT L L G + +AE + R L E++ G HP V L LAL+ +N+
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK 142
Query: 338 QEHSSALLIQEGLYRRALEF 357
E E YRRALE
Sbjct: 143 AEEV------EYYYRRALEI 156
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356
G A + + L E+ G HP V +L LAL++R++ + +A L+ + L R
Sbjct: 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK-EAAHLLNDALAIREKT 76
Query: 357 FLKAPPLESEGVETKVDRTDIVALARGGYAEA 388
K P V ++ ++ RG Y EA
Sbjct: 77 LGKDHP----AVAATLNNLAVLYGKRGKYKEA 104
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 255 VLAEQKDFSDMNTLGSCNMALEEV-------ALAATFA-LGQLEAHMGNFGDAEEILTRT 306
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 137
Query: 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359
L E++ G HP V L LAL+ +N+ E E Y+RALE +
Sbjct: 138 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV------EYYYQRALEIYQ 184
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 350
A G + A + + L E+ G HP V +L LAL++R++ + +A L+ + L
Sbjct: 38 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK-DAANLLNDAL 96
Query: 351 YRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 388
R K P V ++ ++ RG Y EA
Sbjct: 97 AIREKTLGKDHP----AVAATLNNLAVLYGKRGKYKEA 130
>pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|B Chain B, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|C Chain C, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|D Chain D, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
Length = 475
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 120 ESGNYVEAIEKLQKVENFKNSI-LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK 178
E G+Y+ + + + NF S +G R+ M + + L+LG D++ V+ D L+L K
Sbjct: 212 EIGDYIVEHQAVNFI-NFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTAK 270
Query: 179 HKPENYKTYGAVNSRANAVK 198
+ +G R+ AVK
Sbjct: 271 NIIAG--AFGYSGQRSTAVK 288
>pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase,
Putative, From Plasmodium Falciparum (Pf13_0052)
Length = 201
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 122 GNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL---QLGQDDTSSV 167
G++ + I L++ +N+KN I+G+ M+ + +Y ++G+D+ +++
Sbjct: 34 GSWCQVI--LERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNI 80
>pdb|2Q1L|A Chain A, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|B Chain B, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|C Chain C, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|D Chain D, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|A Chain A, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|B Chain B, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|C Chain C, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|D Chain D, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|A Chain A, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|B Chain B, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|C Chain C, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|D Chain D, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|3BGL|A Chain A, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|B Chain B, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|C Chain C, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|D Chain D, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|2R4F|A Chain A, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|B Chain B, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|C Chain C, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|D Chain D, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|3CCT|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
Length = 441
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187
SI G A + +Y+ GQD +V + C+ L E P N Y
Sbjct: 311 SIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLY 358
>pdb|1DQ8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ9|A Chain A, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|B Chain B, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|C Chain C, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|D Chain D, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQA|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1HW8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW9|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HWI|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWJ|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWK|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWL|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
Length = 467
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187
SI G A + +Y+ GQD +V + C+ L E P N Y
Sbjct: 324 SIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLY 371
>pdb|2ID2|A Chain A, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|B Chain B, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|C Chain C, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|D Chain D, Gapn T244s Mutant X-Ray Structure At 2.5 A
Length = 475
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 120 ESGNYVEAIEKLQKVENFKNSI-LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK 178
E G+Y+ + + + NF S +G R+ M + + L+LG D++ V+ D L+L K
Sbjct: 212 EIGDYIVEHQAVNFI-NFSGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTAK 270
Query: 179 HKPENYKTYGAVNSRANAVK 198
+ +G R AVK
Sbjct: 271 NIIAG--AFGYSGQRCTAVK 288
>pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|B Chain B, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|C Chain C, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|D Chain D, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|2EUH|A Chain A, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|B Chain B, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|C Chain C, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|D Chain D, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|1QI6|A Chain A, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|B Chain B, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|C Chain C, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|D Chain D, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
Length = 475
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 120 ESGNYVEAIEKLQKVENFKNSI-LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK 178
E G+Y+ + + + NF S +G R+ M + + L+LG D++ V+ D L+L K
Sbjct: 212 EIGDYIVEHQAVNFI-NFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTAK 270
Query: 179 HKPENYKTYGAVNSRANAVK 198
+ +G R AVK
Sbjct: 271 NIIAG--AFGYSGQRCTAVK 288
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 124 YVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD--------DTSSVV---ADKC 172
Y E + VE F + + + + G+ +L D + V+ ADK
Sbjct: 511 YHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKI 570
Query: 173 LQLCEKHKPENYKTYG-AVNSRANAVKGLVELAHGNLESAESFFK 216
+ KH P+ KTY + +S +AVK E+A E + F K
Sbjct: 571 YSISMKH-PQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDK 614
>pdb|2Q8N|A Chain A, Crystal Structure Of Glucose-6-Phosphate Isomerase (Ec
5.3.1.9) (Tm1385) From Thermotoga Maritima At 1.82 A
Resolution
pdb|2Q8N|B Chain B, Crystal Structure Of Glucose-6-Phosphate Isomerase (Ec
5.3.1.9) (Tm1385) From Thermotoga Maritima At 1.82 A
Resolution
pdb|2Q8N|C Chain C, Crystal Structure Of Glucose-6-Phosphate Isomerase (Ec
5.3.1.9) (Tm1385) From Thermotoga Maritima At 1.82 A
Resolution
Length = 460
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 299 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358
AE + R K EE+F P + L A +HS L EG + + FL
Sbjct: 292 AESLGKRYNLKGEEVFTGQTP-----VKALG------ATDQHSQIQLYNEGPNDKVITFL 340
Query: 359 KAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGER 401
+ + E V + R ++ LAR +E L +Q +E R
Sbjct: 341 RVENFDREIVIPETGRAELSYLARKKLSELLLAEQTGTEEALR 383
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 124 YVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD--------DTSSVV---ADKC 172
Y E + VE F + + + + G+ +L D + V+ ADK
Sbjct: 511 YHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKI 570
Query: 173 LQLCEKHKPENYKTYG-AVNSRANAVKGLVELAHGNLESAESFFK 216
+ KH P+ KTY + +S +AVK E+A E + F K
Sbjct: 571 YSISMKH-PQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDK 614
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 124 YVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD--------DTSSVV---ADKC 172
Y E + VE F + + + + G+ +L D + V+ ADK
Sbjct: 511 YHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVQPFDCRDYAVVLRKYADKI 570
Query: 173 LQLCEKHKPENYKTYG-AVNSRANAVKGLVELAHGNLESAESFFK 216
+ KH P+ KTY + +S +AVK E+A E + F K
Sbjct: 571 YSISMKH-PQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDK 614
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 124 YVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD--------DTSSVV---ADKC 172
Y E + VE F + + + + G+ +L D + V+ ADK
Sbjct: 509 YHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKI 568
Query: 173 LQLCEKHKPENYKTYG-AVNSRANAVKGLVELAHGNLESAESFFK 216
+ KH P+ KTY + +S +AVK E+A E + F K
Sbjct: 569 YSISMKH-PQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDK 612
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 124 YVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD--------DTSSVV---ADKC 172
Y E + VE F + + + + G+ +L D + V+ ADK
Sbjct: 497 YHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKI 556
Query: 173 LQLCEKHKPENYKTYG-AVNSRANAVKGLVELAHGNLESAESFFK 216
+ KH P+ KTY + +S +AVK E+A E + F K
Sbjct: 557 YSISMKH-PQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDK 600
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 124 YVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD--------DTSSVV---ADKC 172
Y E + VE F + + + + G+ +L D + V+ ADK
Sbjct: 541 YHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKI 600
Query: 173 LQLCEKHKPENYKTYG-AVNSRANAVKGLVELAHGNLESAESFFK 216
+ KH P+ KTY + +S +AVK E+A E + F K
Sbjct: 601 YSISMKH-PQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDK 644
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 118 LYESGNYVEAIE-KLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLC 176
LY +G+ + AI+ KL NF N +LG A L LYL + D V+ L
Sbjct: 192 LYRAGSSIGAIDSKLDWSHNFTN-MLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLV 250
Query: 177 EKHKPENYKTY-GAVNSRANAVKGL 200
+ Y ++ A+N A + GL
Sbjct: 251 GSALSDPYLSFAAAMNGLAGPLHGL 275
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 118 LYESGNYVEAIE-KLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLC 176
LY +G+ + AI+ KL NF N +LG A L LYL + D V+ L
Sbjct: 193 LYRAGSSIGAIDSKLDWSHNFTN-MLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLV 251
Query: 177 EKHKPENYKTY-GAVNSRANAVKGL 200
+ Y ++ A+N A + GL
Sbjct: 252 GSALSDPYLSFAAAMNGLAGPLHGL 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,085,776
Number of Sequences: 62578
Number of extensions: 465666
Number of successful extensions: 1248
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1229
Number of HSP's gapped (non-prelim): 34
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)