BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013549
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2
Length = 1325
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 102/253 (40%), Gaps = 40/253 (15%)
Query: 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVAD 170
L A++TL ++ Y +A E+F+ + +R A LY +++
Sbjct: 1025 LEALATLYHKQNKYEQA-------EHFRKKSVIIRQQATRRKGSLY-------GFALLRR 1070
Query: 171 KCLQLCE----KHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK-GLQEEEGCT 225
+ LQL E K KPEN +T + G++ NLE+AE F K L+ E
Sbjct: 1071 RALQLEELTLGKDKPENARTLNEL--------GVLYFLQNNLETAEQFLKRSLEMRERVL 1122
Query: 226 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 285
G + L+ KK Y+K E+ D +A + +LA T
Sbjct: 1123 GPDHPDCAQSLNNLAALCNEKKQYEKAEELYERALDIRRR------ALAPDHPSLAYTVK 1176
Query: 286 -LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 344
L L G A + + ++ FG HP V L LA++ + M++HS AL
Sbjct: 1177 HLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVL--HSQMKKHSEAL 1234
Query: 345 LIQEGLYRRALEF 357
LY RAL+
Sbjct: 1235 ----PLYERALKI 1243
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 295 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF--RNKAMQ-EH--SSALLIQEG 349
FGDAE++ + L +E +G+ HP L LA ++ +NK Q EH +++I++
Sbjct: 995 KFGDAEQLYKQALEISENAYGADHPHAARELEALATLYHKQNKYEQAEHFRKKSVIIRQQ 1054
Query: 350 LYRR 353
RR
Sbjct: 1055 ATRR 1058
>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2
Length = 540
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 279 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337
A+AAT L L G F DAE + R L E++ G HP V L LAL+ +N+
Sbjct: 288 AVAATLNNLAVLFGKRGKFKDAEPLCKRALEIREKVLGDDHPDVAKQLNNLALLCQNQGK 347
Query: 338 QEHSSALLIQEGLYRRALEFLKAP--PLESEGVETKVDRTDIVALARGGYAEA 388
E E Y+RALE ++ P + +TK + + L +G Y EA
Sbjct: 348 YEEV------EKYYKRALEIYESKLGPDDPNVAKTKNNLSSAY-LKQGKYKEA 393
>sp|P46825|KLC_DORPE Kinesin light chain OS=Doryteuthis pealeii PE=2 SV=1
Length = 571
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 279 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337
A+AAT L L G + DAE + R L E++ G HP V L LAL+ +N+
Sbjct: 302 AVAATLNNLAVLYGKRGKYKDAEPLCKRALVIREKVLGKDHPDVAKQLNNLALLCQNQGK 361
Query: 338 QEHSSALLIQEGLYRRALEF 357
E E Y+RALE
Sbjct: 362 YEEV------ERYYQRALEI 375
>sp|O88448|KLC2_MOUSE Kinesin light chain 2 OS=Mus musculus GN=Klc2 PE=1 SV=1
Length = 599
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 255 VLAEQKDFSDMNTLGSCNMALEE-------VALAATFA-LGQLEAHMGNFGDAEEILTRT 306
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 248 VYRDQNKYKDAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 307
Query: 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357
L E++ G HP V L+ LAL+ +N+ E E YRRALE
Sbjct: 308 LEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEV------EYYYRRALEI 352
>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1
Length = 1330
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 101/253 (39%), Gaps = 40/253 (15%)
Query: 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVAD 170
L A++TL Y+ N K ++ E+F+ + A++ LY +++
Sbjct: 1030 LEALATL-YQKQN------KYEQAEHFRKKSFKIHQKAIKKKGNLY-------GFALLRR 1075
Query: 171 KCLQLCE----KHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK-GLQEEEGCT 225
+ LQL E K P+N +T + G++ NLE+A+ F K L+ E
Sbjct: 1076 RALQLEELTLGKDTPDNARTLNEL--------GVLYYLQNNLETADQFLKRSLEMRERVL 1127
Query: 226 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 285
G + L+ KK Y K E+ D +A + +LA T
Sbjct: 1128 GPDHPDCAQSLNNLAALCNEKKQYDKAEELYERALDIRRRA------LAPDHPSLAYTVK 1181
Query: 286 -LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 344
L L MG A + + ++ FG HP V L LA+++ M++H AL
Sbjct: 1182 HLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQ--MKKHVEAL 1239
Query: 345 LIQEGLYRRALEF 357
LY RAL+
Sbjct: 1240 ----PLYERALKI 1248
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 286 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM------------FR 333
L + FG+AE++ + L +E +G+ HP L LA + FR
Sbjct: 991 LASVYVQWKKFGNAEQLYKQALEISENAYGADHPYTARELEALATLYQKQNKYEQAEHFR 1050
Query: 334 NKAMQEHSSALLIQEGLY------RRALEF 357
K+ + H A+ + LY RRAL+
Sbjct: 1051 KKSFKIHQKAIKKKGNLYGFALLRRRALQL 1080
>sp|Q9H0B6|KLC2_HUMAN Kinesin light chain 2 OS=Homo sapiens GN=KLC2 PE=1 SV=1
Length = 622
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 279 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337
A+AAT L L G + +AE + R L E++ G HP V L+ LAL+ +N+
Sbjct: 280 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGK 339
Query: 338 QEHSSALLIQEGLYRRALEF 357
E E YRRALE
Sbjct: 340 AEEV------EYYYRRALEI 353
>sp|Q2HJJ0|KLC4_BOVIN Kinesin light chain 4 OS=Bos taurus GN=KLC4 PE=2 SV=2
Length = 616
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 262 FSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 320
+D ++ + + A+AAT L L G + +AE + R L E++ G++HP
Sbjct: 273 LNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPD 332
Query: 321 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP--PLESEGVETKVDRTDIV 378
V L LAL+ +N+ E E YRRAL + P TK +
Sbjct: 333 VAKQLNNLALLCQNQGKYE------AVERYYRRALAIYEGQLGPDNPNVARTKNNLASCY 386
Query: 379 ALARGGYAEA 388
L +G YAEA
Sbjct: 387 -LKQGKYAEA 395
>sp|P37285|KLC1_RAT Kinesin light chain 1 OS=Rattus norvegicus GN=Klc1 PE=1 SV=2
Length = 560
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 255 VLAEQKDFSDMNTLGSCNMALEEV-------ALAATFA-LGQLEAHMGNFGDAEEILTRT 306
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 264 VYRDQNKYKDAANLLNDALAIREKTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 323
Query: 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357
L E++ G HP V L LAL+ +N+ E E Y+RALE
Sbjct: 324 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV------EYYYQRALEI 368
>sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2
Length = 573
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 255 VLAEQKDFSDMNTLGSCNMALEEV-------ALAATFA-LGQLEAHMGNFGDAEEILTRT 306
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 264 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 323
Query: 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357
L E++ G HP V L LAL+ +N+ E E Y+RALE
Sbjct: 324 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV------EYYYQRALEI 368
>sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KLC1 PE=2 SV=3
Length = 560
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 255 VLAEQKDFSDMNTLGSCNMALEEV-------ALAATFA-LGQLEAHMGNFGDAEEILTRT 306
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 264 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 323
Query: 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357
L E++ G HP V L LAL+ +N+ E E Y+RALE
Sbjct: 324 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV------EYYYQRALEI 368
>sp|P46824|KLC_DROME Kinesin light chain OS=Drosophila melanogaster GN=Klc PE=1 SV=1
Length = 508
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 279 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337
A+AAT L L G + DAE + R L E++ G HP V L LAL+ +N+
Sbjct: 268 AVAATLNNLAVLYGKRGKYKDAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 327
Query: 338 QEHSSALLIQEGLYRRALEFLKAP--PLESEGVETKVDRTDIVALARGGYAEA 388
+ E Y+RAL+ ++ P + +TK + L +G Y EA
Sbjct: 328 YDEV------EKYYQRALDIYESKLGPDDPNVAKTKNNLAGCY-LKQGRYTEA 373
>sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus purpuratus PE=2 SV=1
Length = 686
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 279 ALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337
A+AAT L L G + +AE + R L E++ G HP V L LAL+ +N+
Sbjct: 297 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 356
Query: 338 QEHSSALLIQEGLYRRALEF 357
E E Y+RALE
Sbjct: 357 YEEV------EWYYQRALEI 370
>sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3
Length = 619
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 262 FSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 320
+D ++ + + A+AAT L L G + +AE + R L E++ G++HP
Sbjct: 276 LNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNHPD 335
Query: 321 VGVVLTCLALMFRNKAMQE-----HSSALLIQEG 349
V L LAL+ +N+ E + AL I EG
Sbjct: 336 VAKQLNNLALLCQNQGKYEAVERYYQRALAIYEG 369
>sp|O88447|KLC1_MOUSE Kinesin light chain 1 OS=Mus musculus GN=Klc1 PE=1 SV=3
Length = 541
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 255 VLAEQKDFSDMNTLGSCNMALEEV-------ALAATFA-LGQLEAHMGNFGDAEEILTRT 306
V +Q + D L + +A+ E A+AAT L L G + +AE + R
Sbjct: 262 VYRDQNKYKDAANLLNDALAIREKTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 321
Query: 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 355
L E++ G HP V L LAL+ +N+ E E Y+RAL
Sbjct: 322 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV------EYYYQRAL 364
>sp|Q9DBS5|KLC4_MOUSE Kinesin light chain 4 OS=Mus musculus GN=Klc4 PE=1 SV=1
Length = 619
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 262 FSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 320
+D ++ + + A+AAT L L G + +AE + R L E++ G+ HP
Sbjct: 276 LNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPD 335
Query: 321 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 355
V L LAL+ +N+ E E Y+RAL
Sbjct: 336 VAKQLNNLALLCQNQGKYE------AVERYYQRAL 364
>sp|Q5PQM2|KLC4_RAT Kinesin light chain 4 OS=Rattus norvegicus GN=Klc4 PE=2 SV=1
Length = 619
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 262 FSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 320
+D ++ + + A+AAT L L G + +AE + R L E++ G+ HP
Sbjct: 276 LNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPD 335
Query: 321 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 355
V L LAL+ +N+ E E Y+RAL
Sbjct: 336 VAKQLNNLALLCQNQGKYE------AVERYYQRAL 364
>sp|Q91W40|KLC3_MOUSE Kinesin light chain 3 OS=Mus musculus GN=Klc3 PE=1 SV=1
Length = 508
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 249 YQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTL 307
Y++ E+L + + TLG E A+AAT L L G + +AE + R L
Sbjct: 265 YKEATELLHDALQIRE-QTLGP-----EHPAVAATLNNLAVLYGKRGRYREAEPLCQRAL 318
Query: 308 TKTEELFGSHHPKVGVVLTCLALMFRNKAM-----QEHSSALLIQEGL 350
E++ G+ HP V L LAL+ +N+ + ++ AL I E L
Sbjct: 319 EIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEAL 366
>sp|Q68G30|KLC3_RAT Kinesin light chain 3 OS=Rattus norvegicus GN=Klc3 PE=1 SV=1
Length = 505
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 249 YQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA-LGQLEAHMGNFGDAEEILTRTL 307
Y++ E+L + + TLG E A+AAT L L G + +AE + R L
Sbjct: 265 YKEATELLHDALQIRE-QTLGP-----EHPAVAATLNNLAVLYGKRGRYREAEPLCQRAL 318
Query: 308 TKTEELFGSHHPKVGVVLTCLALMFRNKAM-----QEHSSALLIQEGL 350
E++ G+ HP V L LAL+ +N+ + ++ AL I E L
Sbjct: 319 EIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEAL 366
>sp|Q6P597|KLC3_HUMAN Kinesin light chain 3 OS=Homo sapiens GN=KLC3 PE=1 SV=2
Length = 504
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 276 EEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN 334
E A+AAT L L G + +AE + R L E++ G+ HP V L LAL+ +N
Sbjct: 286 EHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQN 345
Query: 335 KAMQE-----HSSALLIQEGL 350
+ E ++ AL I E L
Sbjct: 346 QGKFEDVERHYARALSIYEAL 366
>sp|Q2TBQ9|KLC3_BOVIN Kinesin light chain 3 OS=Bos taurus GN=KLC3 PE=2 SV=1
Length = 505
Score = 35.8 bits (81), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 276 EEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN 334
E A+AAT L L G + +AE + R L E++ G+ HP V L LAL+ +N
Sbjct: 286 EHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQN 345
Query: 335 KAMQE-----HSSALLIQEGL 350
+ E ++ AL I E L
Sbjct: 346 QGKFEEVERHYARALSIYEAL 366
>sp|Q5R8E2|KLC3_PONAB Kinesin light chain 3 OS=Pongo abelii GN=KLC3 PE=2 SV=1
Length = 504
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 276 EEVALAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN 334
E A+AAT L L G + +AE + R L E++ G+ HP V L LAL+ +N
Sbjct: 286 EHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQN 345
Query: 335 KAMQE-----HSSALLIQEGL 350
+ E ++ AL I E L
Sbjct: 346 QGKFEDVERHYARALSIYEAL 366
>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1
Length = 1303
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 99/258 (38%), Gaps = 61/258 (23%)
Query: 116 TLLYESGNYVEAIEKL--------QKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSV 167
+LLY+ N E EKL QK K + G + AL L LG+D T
Sbjct: 1012 SLLYQKQNKYEQAEKLRKRSVKIRQKTARQKGHMYGFALLKRRALQLEELTLGKDSTDCA 1071
Query: 168 VADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF-KGLQEEEGCTG 226
KT + G++ NL++A+ F + L+ + G
Sbjct: 1072 -----------------KTLNEL--------GVLYYLQNNLDAAKLFLTRSLEMRQRVLG 1106
Query: 227 ------SAALSYGEYLHATRN-FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA 279
+ +L+ LH+ R + A++ Y++ +++ +A + +
Sbjct: 1107 PDHPDCAQSLNNLAALHSERKEYESAEELYERALDIRKRA-------------LAPDHPS 1153
Query: 280 LAATFA-LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338
LA T L L G A + L E+ FG HP V L LA+++ ++
Sbjct: 1154 LAYTLKHLAMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSVATALVNLAVLYCQ--LK 1211
Query: 339 EHSSALLIQEGLYRRALE 356
+HS AL LY RAL+
Sbjct: 1212 QHSDAL----PLYERALK 1225
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341
A L L + DA + R L E+ G HP+VG L LA++ + E +
Sbjct: 1199 ALVNLAVLYCQLKQHSDALPLYERALKVYEDSLGRLHPRVGETLKNLAVLSYEEGDFEKA 1258
Query: 342 SALLIQEGLYRRALEFLKAPP 362
+ LY+RA+E +A P
Sbjct: 1259 AE------LYKRAMEIKEAEP 1273
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 81 SYSQGMLVLEQCLST---QPSDGQLAESWRGISLLAMSTLLYESGNY-VEAIEKLQKVEN 136
++ G VL++C++ Q + +AE R LLA GNY V+ + +L+
Sbjct: 491 THRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPF----GNYAVQFVIELR---- 542
Query: 137 FKNSILGVRVAAMEA-LAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182
+ VA M A L G Y+QL SS + ++CL C + +P+
Sbjct: 543 -----IPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQ 584
>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1
Length = 1300
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 91/251 (36%), Gaps = 47/251 (18%)
Query: 117 LLYESGNYVEAIEKL--------QKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVV 168
+LY+ N E E+L QK K S+ G + AL L LG+D +
Sbjct: 1008 VLYQKQNKFEQAEQLRKKSLKIRQKSARRKGSMYGFALLRRRALQLEELTLGKDTSD--- 1064
Query: 169 ADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK-GLQEEEGCTGS 227
N+R G++ NLE+AE+F K L+ E G+
Sbjct: 1065 ----------------------NARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGA 1102
Query: 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA-L 286
+ ++ KK Y K E+ D ++ + +LA T L
Sbjct: 1103 DHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRA------LSPDHPSLAYTVKHL 1156
Query: 287 GQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI 346
L G A + + ++ FG HP V L LA+++ M++ AL
Sbjct: 1157 AVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQ--MKKQDDAL-- 1212
Query: 347 QEGLYRRALEF 357
LY RA++
Sbjct: 1213 --PLYERAMKI 1221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,566,136
Number of Sequences: 539616
Number of extensions: 5978445
Number of successful extensions: 16965
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 16883
Number of HSP's gapped (non-prelim): 83
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)