Query 013549
Match_columns 441
No_of_seqs 231 out of 536
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 100.0 9.9E-32 2.1E-36 282.1 30.9 278 54-392 191-473 (508)
2 KOG1840 Kinesin light chain [C 100.0 5.6E-30 1.2E-34 268.9 29.0 245 54-367 233-490 (508)
3 KOG4626 O-linked N-acetylgluco 99.9 1.6E-25 3.6E-30 231.9 17.4 148 204-392 332-479 (966)
4 KOG4626 O-linked N-acetylgluco 99.9 3.4E-25 7.4E-30 229.6 18.3 307 29-413 159-470 (966)
5 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-20 3.1E-25 204.7 30.1 262 78-394 306-567 (615)
6 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-18 2.4E-23 190.0 32.8 187 198-418 371-561 (615)
7 PRK15174 Vi polysaccharide exp 99.8 1.3E-17 2.9E-22 182.9 32.0 265 55-392 72-341 (656)
8 PRK11788 tetratricopeptide rep 99.8 3.5E-17 7.5E-22 166.8 29.3 255 78-394 47-307 (389)
9 PRK15174 Vi polysaccharide exp 99.8 2.4E-17 5.1E-22 181.0 29.3 267 55-393 106-376 (656)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 5E-17 1.1E-21 178.8 31.8 288 79-421 580-893 (899)
11 PRK11788 tetratricopeptide rep 99.8 1.5E-16 3.3E-21 162.1 31.3 246 59-357 66-311 (389)
12 PRK11447 cellulose synthase su 99.8 3.7E-16 8E-21 181.5 33.6 293 62-392 303-660 (1157)
13 TIGR02917 PEP_TPR_lipo putativ 99.8 2.7E-16 5.8E-21 173.0 30.4 267 63-391 466-758 (899)
14 PRK11447 cellulose synthase su 99.8 8.4E-16 1.8E-20 178.5 33.3 293 78-422 281-660 (1157)
15 PRK09782 bacteriophage N4 rece 99.7 4.1E-16 8.9E-21 176.8 27.9 264 56-392 469-734 (987)
16 PRK09782 bacteriophage N4 rece 99.7 8.8E-15 1.9E-19 166.0 28.1 250 79-394 451-702 (987)
17 TIGR02521 type_IV_pilW type IV 99.7 1.9E-14 4.2E-19 132.8 24.0 196 102-341 25-222 (234)
18 KOG1126 DNA-binding cell divis 99.6 1.8E-14 3.8E-19 152.0 22.7 290 62-418 317-610 (638)
19 TIGR02521 type_IV_pilW type IV 99.6 6.3E-14 1.4E-18 129.3 23.6 210 54-309 23-232 (234)
20 PRK12370 invasion protein regu 99.6 3.5E-13 7.6E-18 145.4 29.6 248 78-391 273-529 (553)
21 PRK10049 pgaA outer membrane p 99.6 1.9E-12 4.1E-17 144.8 32.9 284 56-392 9-333 (765)
22 PRK04841 transcriptional regul 99.6 2.1E-12 4.6E-17 146.0 33.8 286 79-392 422-754 (903)
23 PRK10049 pgaA outer membrane p 99.6 6.8E-13 1.5E-17 148.3 27.9 279 65-392 119-450 (765)
24 PRK04841 transcriptional regul 99.5 6.3E-12 1.4E-16 142.2 32.4 277 79-392 354-635 (903)
25 KOG1130 Predicted G-alpha GTPa 99.5 2.6E-13 5.6E-18 136.6 18.5 296 65-396 17-342 (639)
26 KOG1130 Predicted G-alpha GTPa 99.5 4.7E-13 1E-17 134.7 18.7 272 55-357 47-348 (639)
27 PF13424 TPR_12: Tetratricopep 99.5 6.1E-14 1.3E-18 111.4 9.1 74 279-359 4-77 (78)
28 PRK11189 lipoprotein NlpI; Pro 99.5 5.3E-12 1.2E-16 125.8 24.2 227 80-358 40-266 (296)
29 KOG1126 DNA-binding cell divis 99.5 2.7E-13 5.8E-18 143.2 15.5 238 56-341 347-610 (638)
30 PRK12370 invasion protein regu 99.5 4.9E-12 1.1E-16 136.5 24.6 210 78-341 316-526 (553)
31 KOG2002 TPR-containing nuclear 99.5 1.8E-11 4E-16 133.7 26.0 333 54-438 156-535 (1018)
32 COG3063 PilF Tfp pilus assembl 99.5 1.4E-12 3E-17 123.2 14.9 158 198-394 41-198 (250)
33 PF13429 TPR_15: Tetratricopep 99.4 6.2E-13 1.3E-17 130.7 12.3 257 67-392 13-271 (280)
34 PF13424 TPR_12: Tetratricopep 99.4 3.4E-13 7.4E-18 107.1 8.0 77 58-139 1-77 (78)
35 cd05804 StaR_like StaR_like; a 99.4 2.6E-10 5.7E-15 114.9 29.3 309 59-418 3-326 (355)
36 PRK11189 lipoprotein NlpI; Pro 99.4 2.2E-11 4.7E-16 121.5 20.5 226 59-334 61-286 (296)
37 PF13429 TPR_15: Tetratricopep 99.4 2.1E-12 4.5E-17 126.9 12.8 223 78-358 56-278 (280)
38 COG3063 PilF Tfp pilus assembl 99.4 1.2E-11 2.7E-16 116.8 17.1 164 102-341 29-192 (250)
39 KOG2002 TPR-containing nuclear 99.4 1.5E-10 3.3E-15 126.6 27.5 254 60-356 231-524 (1018)
40 KOG1173 Anaphase-promoting com 99.3 2.8E-11 6E-16 126.1 16.2 212 102-357 306-518 (611)
41 PLN03218 maturation of RBCL 1; 99.3 2.2E-09 4.9E-14 123.2 32.6 234 109-392 508-742 (1060)
42 PLN03218 maturation of RBCL 1; 99.3 1.4E-09 2.9E-14 124.9 28.6 258 79-393 520-778 (1060)
43 PLN03081 pentatricopeptide (PP 99.3 4.8E-10 1E-14 124.1 22.8 253 80-392 273-551 (697)
44 PRK10747 putative protoheme IX 99.3 3.9E-09 8.4E-14 109.5 27.9 228 78-358 130-391 (398)
45 KOG1155 Anaphase-promoting com 99.3 1.5E-09 3.2E-14 111.2 23.9 227 78-341 274-526 (559)
46 TIGR03302 OM_YfiO outer membra 99.2 6.8E-10 1.5E-14 105.9 18.7 178 102-306 27-229 (235)
47 PRK15179 Vi polysaccharide bio 99.2 8.2E-10 1.8E-14 121.7 21.8 129 197-359 91-219 (694)
48 cd05804 StaR_like StaR_like; a 99.2 7.3E-10 1.6E-14 111.7 19.5 208 104-356 2-214 (355)
49 TIGR00540 hemY_coli hemY prote 99.2 2.8E-09 6E-14 110.9 24.4 240 78-361 130-403 (409)
50 PLN03081 pentatricopeptide (PP 99.2 6.5E-09 1.4E-13 115.2 28.7 218 78-355 99-352 (697)
51 KOG1173 Anaphase-promoting com 99.2 9.4E-10 2E-14 114.9 20.2 272 55-392 240-512 (611)
52 TIGR03302 OM_YfiO outer membra 99.2 3.5E-09 7.5E-14 101.0 19.6 183 56-252 27-229 (235)
53 TIGR00540 hemY_coli hemY prote 99.2 1.2E-08 2.6E-13 106.2 25.2 254 78-392 96-393 (409)
54 PF14938 SNAP: Soluble NSF att 99.1 2.2E-09 4.7E-14 106.4 18.3 201 199-422 42-258 (282)
55 PRK14574 hmsH outer membrane p 99.1 3E-08 6.5E-13 111.3 29.0 165 200-392 335-507 (822)
56 CHL00033 ycf3 photosystem I as 99.1 1.2E-09 2.7E-14 99.5 14.7 119 197-329 40-165 (168)
57 KOG1129 TPR repeat-containing 99.1 1.3E-09 2.9E-14 107.5 15.6 223 79-357 236-458 (478)
58 KOG1155 Anaphase-promoting com 99.1 8.2E-09 1.8E-13 105.9 21.6 257 81-390 242-528 (559)
59 CHL00033 ycf3 photosystem I as 99.1 8.1E-10 1.8E-14 100.7 12.5 139 205-367 12-153 (168)
60 PRK10747 putative protoheme IX 99.1 4.6E-08 1E-12 101.5 26.1 246 79-392 97-384 (398)
61 PF14938 SNAP: Soluble NSF att 99.1 7.9E-09 1.7E-13 102.4 19.5 179 103-341 30-215 (282)
62 PLN03077 Protein ECB2; Provisi 99.1 3.6E-08 7.7E-13 111.7 27.3 181 79-304 235-448 (857)
63 KOG1125 TPR repeat-containing 99.1 3.5E-09 7.6E-14 111.0 16.9 209 79-319 298-537 (579)
64 PLN03077 Protein ECB2; Provisi 99.1 3E-08 6.5E-13 112.3 25.4 189 110-341 426-644 (857)
65 PRK14574 hmsH outer membrane p 99.0 6E-08 1.3E-12 108.9 25.7 171 99-309 28-198 (822)
66 KOG0547 Translocase of outer m 99.0 4.8E-08 1E-12 100.9 22.5 296 60-409 276-583 (606)
67 KOG2003 TPR repeat-containing 99.0 9.9E-09 2.1E-13 104.9 16.9 103 61-173 200-303 (840)
68 KOG1129 TPR repeat-containing 99.0 5.4E-08 1.2E-12 96.4 20.9 274 57-392 176-452 (478)
69 KOG2003 TPR repeat-containing 99.0 3.8E-08 8.3E-13 100.7 19.8 238 112-392 423-683 (840)
70 PRK15359 type III secretion sy 99.0 3.8E-09 8.2E-14 94.4 11.3 109 212-357 13-121 (144)
71 PF13374 TPR_10: Tetratricopep 99.0 7E-10 1.5E-14 77.0 4.9 41 280-320 2-42 (42)
72 COG2956 Predicted N-acetylgluc 99.0 1.8E-07 4E-12 92.6 23.1 223 81-358 50-279 (389)
73 PRK15179 Vi polysaccharide bio 99.0 3E-08 6.5E-13 109.4 19.6 137 104-256 82-218 (694)
74 PRK15359 type III secretion sy 98.9 1.5E-08 3.2E-13 90.6 13.0 108 198-333 30-137 (144)
75 TIGR02552 LcrH_SycD type III s 98.9 2.2E-08 4.7E-13 87.0 12.2 112 213-358 4-115 (135)
76 KOG0547 Translocase of outer m 98.9 1.3E-07 2.7E-12 97.8 19.0 229 79-360 339-569 (606)
77 KOG1941 Acetylcholine receptor 98.9 3.7E-07 7.9E-12 91.6 21.5 237 80-340 97-349 (518)
78 KOG1941 Acetylcholine receptor 98.9 5.1E-07 1.1E-11 90.6 22.2 252 80-362 20-280 (518)
79 PRK10370 formate-dependent nit 98.9 9.8E-08 2.1E-12 89.9 16.2 121 204-358 51-174 (198)
80 PRK02603 photosystem I assembl 98.9 6.5E-08 1.4E-12 88.6 14.6 117 227-368 36-154 (172)
81 KOG1174 Anaphase-promoting com 98.8 1.1E-06 2.4E-11 89.4 21.2 270 53-357 188-500 (564)
82 KOG2076 RNA polymerase III tra 98.8 8.3E-06 1.8E-10 89.6 29.1 295 49-394 125-508 (895)
83 PRK02603 photosystem I assembl 98.8 3.1E-07 6.7E-12 84.1 15.6 113 196-328 39-161 (172)
84 PF09976 TPR_21: Tetratricopep 98.7 4.6E-07 9.9E-12 80.7 15.6 120 204-355 23-145 (145)
85 PRK10370 formate-dependent nit 98.7 1.5E-06 3.3E-11 81.9 19.5 103 196-322 77-182 (198)
86 KOG2376 Signal recognition par 98.7 1.9E-06 4.1E-11 90.9 21.0 240 78-382 24-275 (652)
87 PRK14720 transcript cleavage f 98.7 9E-07 2E-11 99.3 19.3 241 55-358 24-284 (906)
88 KOG1174 Anaphase-promoting com 98.7 1.4E-06 3E-11 88.8 18.7 207 58-309 262-500 (564)
89 PF12688 TPR_5: Tetratrico pep 98.7 4.9E-07 1.1E-11 78.6 13.4 92 228-341 3-94 (120)
90 TIGR02552 LcrH_SycD type III s 98.6 4.2E-07 9E-12 78.9 12.1 94 197-310 22-115 (135)
91 TIGR02795 tol_pal_ybgF tol-pal 98.6 8.5E-07 1.8E-11 74.4 12.7 104 227-358 3-106 (119)
92 PLN02789 farnesyltranstransfer 98.6 2.8E-05 6E-10 78.8 25.0 206 78-335 49-268 (320)
93 KOG1125 TPR repeat-containing 98.6 4.4E-06 9.5E-11 88.1 19.5 199 112-360 289-530 (579)
94 COG5010 TadD Flp pilus assembl 98.6 1.9E-06 4E-11 83.3 15.1 157 66-250 70-226 (257)
95 COG2956 Predicted N-acetylgluc 98.6 7.7E-06 1.7E-10 81.3 19.6 205 68-310 75-279 (389)
96 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.5E-06 5.3E-11 71.5 13.5 104 198-323 8-114 (119)
97 PF09976 TPR_21: Tetratricopep 98.5 2.3E-06 5.1E-11 76.1 14.0 122 79-219 24-145 (145)
98 KOG0550 Molecular chaperone (D 98.5 2.4E-06 5.1E-11 87.1 15.3 274 79-392 62-344 (486)
99 KOG0548 Molecular co-chaperone 98.5 1.9E-05 4.2E-10 82.8 22.0 196 107-341 223-445 (539)
100 KOG3617 WD40 and TPR repeat-co 98.5 6.7E-05 1.5E-09 81.9 26.2 279 81-398 815-1174(1416)
101 PF12895 Apc3: Anaphase-promot 98.5 7.2E-07 1.6E-11 71.8 8.9 82 204-306 1-84 (84)
102 PLN03088 SGT1, suppressor of 98.5 1.9E-06 4E-11 88.4 13.8 103 199-326 9-111 (356)
103 COG5010 TadD Flp pilus assembl 98.5 3.9E-06 8.4E-11 81.1 14.9 116 198-341 106-221 (257)
104 cd00189 TPR Tetratricopeptide 98.5 2.1E-06 4.6E-11 66.2 10.9 95 229-357 3-97 (100)
105 cd00189 TPR Tetratricopeptide 98.5 1.7E-06 3.8E-11 66.7 10.3 92 198-309 6-97 (100)
106 KOG4162 Predicted calmodulin-b 98.4 0.0001 2.2E-09 80.2 25.7 279 65-383 397-732 (799)
107 PRK15363 pathogenicity island 98.4 2.3E-06 4.9E-11 77.5 11.1 89 203-311 46-134 (157)
108 KOG1839 Uncharacterized protei 98.4 2.3E-06 5.1E-11 97.2 13.6 197 78-329 944-1148(1236)
109 PF13414 TPR_11: TPR repeat; P 98.4 2.3E-06 5E-11 65.8 8.9 63 281-357 4-67 (69)
110 KOG0548 Molecular co-chaperone 98.4 0.00014 3.1E-09 76.4 24.3 245 61-353 223-485 (539)
111 KOG1839 Uncharacterized protei 98.4 2.4E-05 5.3E-10 89.2 19.9 323 51-399 696-1087(1236)
112 PRK14720 transcript cleavage f 98.3 3.2E-05 6.9E-10 87.1 20.3 157 100-310 23-179 (906)
113 PF12688 TPR_5: Tetratrico pep 98.3 1.5E-05 3.4E-10 69.2 13.9 114 282-410 3-116 (120)
114 PLN03088 SGT1, suppressor of 98.3 4.2E-06 9.1E-11 85.8 11.8 94 231-358 7-100 (356)
115 KOG2076 RNA polymerase III tra 98.3 4.2E-05 9.1E-10 84.3 19.9 228 78-341 219-502 (895)
116 PF13374 TPR_10: Tetratricopep 98.3 9E-07 2E-11 61.1 4.5 41 321-367 1-42 (42)
117 PLN02789 farnesyltranstransfer 98.3 0.00015 3.3E-09 73.4 22.1 187 80-335 34-230 (320)
118 PF13414 TPR_11: TPR repeat; P 98.3 5.2E-06 1.1E-10 63.8 8.5 63 227-309 4-67 (69)
119 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00061 1.3E-08 59.6 22.8 226 80-358 37-266 (291)
120 PF13432 TPR_16: Tetratricopep 98.2 3.9E-06 8.4E-11 63.9 7.3 58 198-255 3-60 (65)
121 PF12569 NARP1: NMDA receptor- 98.2 0.00022 4.9E-09 76.5 23.1 209 110-341 6-247 (517)
122 PRK15363 pathogenicity island 98.2 3.2E-05 7E-10 70.0 14.1 95 279-394 34-128 (157)
123 KOG0550 Molecular chaperone (D 98.2 4.9E-05 1.1E-09 77.7 16.4 236 79-360 96-353 (486)
124 KOG0553 TPR repeat-containing 98.2 6.7E-06 1.5E-10 81.0 9.4 91 233-357 88-178 (304)
125 KOG2376 Signal recognition par 98.2 0.001 2.2E-08 70.8 25.5 258 79-356 123-486 (652)
126 PF04733 Coatomer_E: Coatomer 98.2 1.6E-05 3.4E-10 79.5 11.5 239 78-389 13-255 (290)
127 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.1E-05 2.5E-10 83.8 9.7 73 56-137 69-141 (453)
128 KOG3060 Uncharacterized conser 98.1 0.0031 6.8E-08 61.2 25.5 157 159-358 65-221 (289)
129 COG3071 HemY Uncharacterized e 98.1 0.00081 1.8E-08 68.6 22.4 248 78-360 130-393 (400)
130 KOG0553 TPR repeat-containing 98.1 1.3E-05 2.8E-10 79.0 9.3 87 203-309 92-178 (304)
131 PF04733 Coatomer_E: Coatomer 98.1 5.2E-05 1.1E-09 75.7 13.5 169 110-324 104-275 (290)
132 PF13432 TPR_16: Tetratricopep 98.1 8.4E-06 1.8E-10 62.0 6.1 60 285-358 2-61 (65)
133 PRK10803 tol-pal system protei 98.1 4.3E-05 9.4E-10 75.3 12.6 103 228-358 144-247 (263)
134 KOG0543 FKBP-type peptidyl-pro 98.1 6.2E-05 1.3E-09 76.9 13.9 138 106-255 206-355 (397)
135 PF12895 Apc3: Anaphase-promot 98.1 2.1E-05 4.5E-10 63.2 8.4 83 79-172 2-84 (84)
136 KOG1127 TPR repeat-containing 98.0 0.00037 8E-09 77.7 19.8 215 104-359 488-702 (1238)
137 PRK10866 outer membrane biogen 98.0 0.00059 1.3E-08 66.4 18.8 165 79-250 45-236 (243)
138 KOG4162 Predicted calmodulin-b 98.0 0.0015 3.3E-08 71.3 23.2 209 79-322 336-555 (799)
139 KOG2300 Uncharacterized conser 98.0 0.012 2.7E-07 61.6 28.7 263 48-337 251-540 (629)
140 PF13525 YfiO: Outer membrane 97.9 0.00055 1.2E-08 64.6 16.9 168 107-301 4-199 (203)
141 PRK10803 tol-pal system protei 97.9 7.4E-05 1.6E-09 73.6 10.8 91 203-310 154-247 (263)
142 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 4.2E-05 9E-10 79.7 9.3 67 280-357 75-141 (453)
143 COG2909 MalT ATP-dependent tra 97.9 0.0062 1.3E-07 67.8 25.9 262 104-391 343-640 (894)
144 PF13525 YfiO: Outer membrane 97.9 0.0013 2.8E-08 62.0 18.0 172 61-246 4-198 (203)
145 PRK10153 DNA-binding transcrip 97.9 0.00032 7E-09 75.5 15.5 129 196-357 343-482 (517)
146 KOG1156 N-terminal acetyltrans 97.9 0.0011 2.4E-08 71.2 19.0 222 80-392 21-242 (700)
147 KOG3616 Selective LIM binding 97.8 0.00095 2.1E-08 72.4 17.9 110 279-411 823-948 (1636)
148 PF12569 NARP1: NMDA receptor- 97.8 0.0055 1.2E-07 66.0 23.4 118 197-316 199-341 (517)
149 COG4700 Uncharacterized protei 97.8 0.00046 1E-08 64.2 13.1 116 199-341 96-212 (251)
150 KOG1128 Uncharacterized conser 97.8 0.0005 1.1E-08 74.7 15.2 204 111-360 401-619 (777)
151 KOG0624 dsRNA-activated protei 97.8 0.013 2.9E-07 59.1 24.0 226 78-341 50-279 (504)
152 KOG2047 mRNA splicing factor [ 97.8 0.0053 1.2E-07 66.1 22.1 277 79-392 360-652 (835)
153 COG4783 Putative Zn-dependent 97.8 0.00038 8.3E-09 72.6 13.4 114 200-341 314-427 (484)
154 COG0457 NrfG FOG: TPR repeat [ 97.8 0.014 3E-07 51.0 21.6 196 78-312 71-268 (291)
155 PF08631 SPO22: Meiosis protei 97.7 0.019 4.1E-07 56.8 24.9 136 77-221 4-150 (278)
156 KOG1128 Uncharacterized conser 97.7 0.0016 3.5E-08 70.8 17.9 137 154-322 493-629 (777)
157 PF13176 TPR_7: Tetratricopept 97.7 6.5E-05 1.4E-09 51.0 4.9 32 282-313 1-32 (36)
158 PRK15331 chaperone protein Sic 97.7 0.00029 6.2E-09 64.3 10.3 86 203-308 48-133 (165)
159 PRK10866 outer membrane biogen 97.7 0.0029 6.2E-08 61.6 17.9 171 107-304 31-236 (243)
160 PF10602 RPN7: 26S proteasome 97.7 0.00094 2E-08 61.9 13.3 132 83-223 13-144 (177)
161 KOG3617 WD40 and TPR repeat-co 97.7 0.024 5.2E-07 62.7 25.5 170 115-313 807-1000(1416)
162 KOG0624 dsRNA-activated protei 97.7 0.0022 4.7E-08 64.7 16.4 218 78-336 167-392 (504)
163 KOG3785 Uncharacterized conser 97.7 0.0026 5.7E-08 64.3 16.9 252 80-392 36-308 (557)
164 COG4783 Putative Zn-dependent 97.7 0.0029 6.3E-08 66.2 17.8 147 150-359 310-456 (484)
165 COG4700 Uncharacterized protei 97.6 0.0017 3.7E-08 60.5 14.1 132 110-255 91-222 (251)
166 COG2909 MalT ATP-dependent tra 97.6 0.027 5.7E-07 62.9 25.2 240 78-341 427-678 (894)
167 KOG0543 FKBP-type peptidyl-pro 97.6 0.00024 5.3E-09 72.7 8.9 107 233-358 215-321 (397)
168 PF14559 TPR_19: Tetratricopep 97.5 0.00013 2.8E-09 55.7 4.5 53 203-255 2-54 (68)
169 PF13176 TPR_7: Tetratricopept 97.5 0.00021 4.5E-09 48.5 4.6 31 110-140 1-31 (36)
170 KOG0495 HAT repeat protein [RN 97.5 0.066 1.4E-06 58.2 25.5 277 101-427 509-816 (913)
171 KOG2300 Uncharacterized conser 97.4 0.074 1.6E-06 56.0 24.5 240 121-384 288-540 (629)
172 KOG1585 Protein required for f 97.4 0.047 1E-06 53.0 21.3 33 283-315 153-185 (308)
173 KOG4340 Uncharacterized conser 97.4 0.012 2.7E-07 58.4 17.7 193 80-322 24-216 (459)
174 PRK10153 DNA-binding transcrip 97.4 0.0054 1.2E-07 66.2 16.7 138 110-255 341-482 (517)
175 PF13371 TPR_9: Tetratricopept 97.4 0.00051 1.1E-08 53.1 6.6 59 286-358 1-59 (73)
176 KOG3060 Uncharacterized conser 97.4 0.0066 1.4E-07 59.0 15.4 164 62-255 54-220 (289)
177 KOG3081 Vesicle coat complex C 97.3 0.04 8.6E-07 54.1 19.6 133 199-368 144-278 (299)
178 PF13371 TPR_9: Tetratricopept 97.3 0.00083 1.8E-08 51.9 6.7 56 200-255 3-58 (73)
179 COG3071 HemY Uncharacterized e 97.3 0.044 9.6E-07 56.2 20.5 195 78-312 165-393 (400)
180 KOG0495 HAT repeat protein [RN 97.3 0.072 1.6E-06 57.9 22.7 64 289-358 762-847 (913)
181 KOG1156 N-terminal acetyltrans 97.3 0.029 6.3E-07 60.6 19.7 144 158-341 19-162 (700)
182 PF14559 TPR_19: Tetratricopep 97.2 0.00043 9.4E-09 52.7 4.3 54 79-140 4-57 (68)
183 KOG2047 mRNA splicing factor [ 97.2 0.14 3.1E-06 55.6 23.8 169 201-393 356-535 (835)
184 KOG1127 TPR repeat-containing 97.1 0.024 5.3E-07 63.8 18.2 202 81-317 507-708 (1238)
185 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.0093 2E-07 62.1 14.1 48 284-339 238-285 (395)
186 KOG4555 TPR repeat-containing 97.0 0.028 6.2E-07 49.7 13.6 97 197-309 48-144 (175)
187 KOG4234 TPR repeat-containing 97.0 0.0089 1.9E-07 56.4 11.2 97 233-358 102-198 (271)
188 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.019 4.2E-07 59.8 14.7 118 151-303 174-291 (395)
189 KOG1585 Protein required for f 96.9 0.11 2.5E-06 50.5 18.6 124 199-341 38-169 (308)
190 PF00515 TPR_1: Tetratricopept 96.9 0.0017 3.6E-08 42.9 4.5 33 108-140 1-33 (34)
191 KOG3081 Vesicle coat complex C 96.9 0.043 9.2E-07 53.9 15.8 170 109-321 109-278 (299)
192 KOG3785 Uncharacterized conser 96.9 0.1 2.2E-06 53.1 18.9 60 61-132 150-209 (557)
193 KOG3616 Selective LIM binding 96.9 0.21 4.5E-06 55.0 21.6 69 284-360 769-862 (1636)
194 COG1729 Uncharacterized protei 96.8 0.0081 1.8E-07 58.9 10.2 95 199-310 148-245 (262)
195 KOG4648 Uncharacterized conser 96.8 0.0045 9.8E-08 62.4 8.3 107 199-330 104-210 (536)
196 KOG4555 TPR repeat-containing 96.8 0.02 4.4E-07 50.6 11.1 92 235-357 52-144 (175)
197 PF00515 TPR_1: Tetratricopept 96.7 0.0034 7.3E-08 41.3 4.7 29 282-310 3-31 (34)
198 PF07719 TPR_2: Tetratricopept 96.7 0.0033 7.2E-08 41.1 4.5 33 108-140 1-33 (34)
199 KOG1586 Protein required for f 96.7 0.079 1.7E-06 51.2 15.4 53 204-256 85-144 (288)
200 COG4235 Cytochrome c biogenesi 96.7 0.015 3.2E-07 57.7 10.7 112 197-332 161-275 (287)
201 KOG1070 rRNA processing protei 96.6 0.17 3.7E-06 59.0 19.9 207 104-357 1454-1663(1710)
202 PF12968 DUF3856: Domain of Un 96.6 0.21 4.5E-06 43.5 15.8 111 233-358 16-130 (144)
203 PRK15331 chaperone protein Sic 96.6 0.031 6.6E-07 51.2 11.3 95 228-356 39-133 (165)
204 KOG4340 Uncharacterized conser 96.5 1 2.2E-05 45.2 26.2 252 54-341 36-329 (459)
205 PF12968 DUF3856: Domain of Un 96.5 0.039 8.4E-07 48.0 10.6 102 160-261 23-135 (144)
206 COG1729 Uncharacterized protei 96.5 0.036 7.9E-07 54.4 11.9 101 229-357 144-244 (262)
207 KOG1586 Protein required for f 96.4 0.27 5.8E-06 47.6 16.8 69 227-311 72-145 (288)
208 PF12862 Apc5: Anaphase-promot 96.4 0.041 8.9E-07 45.4 10.2 66 79-145 11-77 (94)
209 PF08631 SPO22: Meiosis protei 96.4 0.13 2.8E-06 50.9 15.5 111 203-322 4-124 (278)
210 PF07719 TPR_2: Tetratricopept 96.3 0.0097 2.1E-07 38.8 4.7 29 282-310 3-31 (34)
211 PF09986 DUF2225: Uncharacteri 96.3 0.04 8.7E-07 52.7 10.6 98 205-309 90-194 (214)
212 COG4785 NlpI Lipoprotein NlpI, 96.2 0.13 2.9E-06 49.2 13.7 201 104-339 61-292 (297)
213 PF09986 DUF2225: Uncharacteri 96.2 0.08 1.7E-06 50.6 12.6 102 239-359 90-196 (214)
214 PRK11906 transcriptional regul 96.2 0.18 4E-06 53.1 15.7 129 78-255 270-401 (458)
215 PF12862 Apc5: Anaphase-promot 96.1 0.045 9.7E-07 45.2 8.8 82 238-332 10-91 (94)
216 PF03704 BTAD: Bacterial trans 96.1 0.078 1.7E-06 46.7 11.0 100 79-182 19-132 (146)
217 KOG4234 TPR repeat-containing 96.1 0.082 1.8E-06 50.0 11.2 104 106-255 93-197 (271)
218 PF13181 TPR_8: Tetratricopept 96.0 0.016 3.4E-07 37.9 4.7 32 108-139 1-32 (34)
219 KOG4648 Uncharacterized conser 96.0 0.036 7.8E-07 56.1 9.1 91 233-357 104-194 (536)
220 PF13428 TPR_14: Tetratricopep 96.0 0.02 4.3E-07 40.3 5.3 38 282-324 3-40 (44)
221 PF13512 TPR_18: Tetratricopep 95.9 0.17 3.6E-06 45.3 12.1 88 228-337 12-99 (142)
222 PF03704 BTAD: Bacterial trans 95.8 0.19 4E-06 44.2 12.3 95 203-317 17-133 (146)
223 PF13512 TPR_18: Tetratricopep 95.8 0.083 1.8E-06 47.3 9.8 57 199-255 17-76 (142)
224 PF13181 TPR_8: Tetratricopept 95.8 0.02 4.3E-07 37.4 4.5 30 282-311 3-32 (34)
225 PF06552 TOM20_plant: Plant sp 95.8 0.12 2.6E-06 48.0 11.0 94 208-314 7-107 (186)
226 KOG1070 rRNA processing protei 95.8 1.2 2.6E-05 52.4 21.0 211 55-313 1493-1704(1710)
227 COG2976 Uncharacterized protei 95.7 0.73 1.6E-05 43.4 16.1 134 156-310 41-189 (207)
228 COG4235 Cytochrome c biogenesi 95.7 0.17 3.6E-06 50.4 12.4 38 103-140 151-188 (287)
229 KOG2053 Mitochondrial inherita 95.7 1.1 2.5E-05 50.4 19.8 171 57-255 38-219 (932)
230 PRK11906 transcriptional regul 95.6 0.27 5.9E-06 51.8 14.2 127 197-357 260-401 (458)
231 PF13431 TPR_17: Tetratricopep 95.5 0.009 1.9E-07 40.0 1.9 33 89-129 2-34 (34)
232 COG4105 ComL DNA uptake lipopr 95.4 1.2 2.6E-05 43.6 17.0 179 108-322 34-238 (254)
233 PF10300 DUF3808: Protein of u 95.4 1.3 2.8E-05 47.4 18.8 171 121-319 201-386 (468)
234 PF13431 TPR_17: Tetratricopep 95.4 0.013 2.9E-07 39.2 2.4 34 214-247 1-34 (34)
235 PF13428 TPR_14: Tetratricopep 95.3 0.04 8.6E-07 38.7 4.8 33 109-141 2-34 (44)
236 KOG1464 COP9 signalosome, subu 95.3 1.6 3.4E-05 43.4 17.1 229 81-336 42-286 (440)
237 COG3118 Thioredoxin domain-con 95.2 0.37 8.1E-06 48.0 12.9 120 202-326 144-279 (304)
238 KOG2610 Uncharacterized conser 95.1 0.43 9.4E-06 48.5 13.2 160 115-307 110-274 (491)
239 PF06552 TOM20_plant: Plant sp 95.1 0.15 3.2E-06 47.5 9.0 77 280-359 25-104 (186)
240 PF10300 DUF3808: Protein of u 94.9 0.29 6.4E-06 52.2 12.1 123 79-220 246-375 (468)
241 KOG1915 Cell cycle control pro 94.7 7.2 0.00016 41.6 21.1 167 65-255 368-536 (677)
242 COG4105 ComL DNA uptake lipopr 94.6 2 4.3E-05 42.1 16.0 164 79-248 47-226 (254)
243 COG2976 Uncharacterized protei 94.4 0.57 1.2E-05 44.1 11.3 56 80-136 48-117 (207)
244 KOG1915 Cell cycle control pro 94.1 5.9 0.00013 42.2 18.9 202 74-318 81-297 (677)
245 PF13174 TPR_6: Tetratricopept 94.1 0.075 1.6E-06 34.1 3.5 31 110-140 2-32 (33)
246 KOG2796 Uncharacterized conser 94.0 1.9 4.2E-05 42.6 14.4 140 107-255 176-315 (366)
247 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.17 3.6E-06 35.0 5.1 36 282-317 3-38 (38)
248 PF09311 Rab5-bind: Rabaptin-l 93.9 0.13 2.9E-06 47.8 6.2 43 279-321 139-181 (181)
249 smart00028 TPR Tetratricopepti 93.9 0.088 1.9E-06 31.9 3.5 29 282-310 3-31 (34)
250 PF10602 RPN7: 26S proteasome 93.8 0.43 9.3E-06 44.2 9.3 99 198-310 42-143 (177)
251 COG4785 NlpI Lipoprotein NlpI, 93.7 1.6 3.4E-05 42.1 12.7 191 78-300 77-295 (297)
252 PF13174 TPR_6: Tetratricopept 93.5 0.094 2E-06 33.6 3.1 28 282-309 2-29 (33)
253 smart00028 TPR Tetratricopepti 93.4 0.11 2.4E-06 31.4 3.3 31 109-139 2-32 (34)
254 KOG0508 Ankyrin repeat protein 93.3 0.045 9.7E-07 57.3 2.0 124 240-376 260-386 (615)
255 PF13281 DUF4071: Domain of un 93.3 10 0.00022 39.5 19.0 175 148-357 143-334 (374)
256 PF13281 DUF4071: Domain of un 93.1 3.8 8.2E-05 42.5 15.7 206 81-309 114-334 (374)
257 PF10345 Cohesin_load: Cohesin 93.1 17 0.00036 40.2 28.7 247 80-339 153-466 (608)
258 KOG2610 Uncharacterized conser 93.0 8.4 0.00018 39.5 17.3 156 155-354 112-273 (491)
259 PF10579 Rapsyn_N: Rapsyn N-te 92.9 0.96 2.1E-05 36.4 8.6 71 61-140 5-75 (80)
260 KOG1464 COP9 signalosome, subu 92.8 2.5 5.5E-05 42.0 13.1 145 201-369 74-230 (440)
261 PF07721 TPR_4: Tetratricopept 92.8 0.15 3.2E-06 31.8 3.1 24 282-305 3-26 (26)
262 PF04910 Tcf25: Transcriptiona 92.7 4.8 0.0001 41.6 15.9 167 80-256 8-223 (360)
263 PF05843 Suf: Suppressor of fo 92.5 2.6 5.5E-05 41.8 13.2 122 206-358 15-137 (280)
264 KOG2053 Mitochondrial inherita 92.2 8.1 0.00017 43.9 17.6 64 192-255 43-106 (932)
265 KOG0545 Aryl-hydrocarbon recep 92.2 2 4.3E-05 42.1 11.4 105 232-357 184-293 (329)
266 PF04184 ST7: ST7 protein; In 92.1 0.56 1.2E-05 49.9 8.2 89 81-171 215-320 (539)
267 KOG4642 Chaperone-dependent E3 91.6 1 2.2E-05 43.8 8.7 90 204-313 22-111 (284)
268 PF07721 TPR_4: Tetratricopept 91.2 0.24 5.2E-06 30.9 2.7 25 109-133 2-26 (26)
269 KOG2471 TPR repeat-containing 90.7 6.7 0.00014 41.9 14.2 112 232-360 246-367 (696)
270 KOG0545 Aryl-hydrocarbon recep 90.6 3.4 7.3E-05 40.5 11.1 117 107-255 177-293 (329)
271 PF10579 Rapsyn_N: Rapsyn N-te 89.8 1.2 2.7E-05 35.8 6.2 62 237-315 17-78 (80)
272 KOG2796 Uncharacterized conser 89.4 25 0.00053 35.1 17.6 200 96-333 112-334 (366)
273 PF10345 Cohesin_load: Cohesin 88.9 41 0.00089 37.1 34.5 313 62-393 59-428 (608)
274 PF00244 14-3-3: 14-3-3 protei 88.9 1.2 2.6E-05 43.2 6.9 60 82-141 142-202 (236)
275 PF05843 Suf: Suppressor of fo 88.4 6.5 0.00014 38.9 11.9 130 111-256 4-137 (280)
276 PF02259 FAT: FAT domain; Int 88.4 14 0.0003 36.7 14.5 150 84-233 120-299 (352)
277 PF04184 ST7: ST7 protein; In 88.2 9.9 0.00021 40.8 13.4 159 84-251 143-320 (539)
278 PF00244 14-3-3: 14-3-3 protei 88.2 2.3 5E-05 41.2 8.3 63 296-360 142-205 (236)
279 PF04910 Tcf25: Transcriptiona 87.9 3.3 7.1E-05 42.8 9.6 109 280-392 40-162 (360)
280 PF10516 SHNi-TPR: SHNi-TPR; 87.7 1 2.2E-05 31.1 3.9 35 108-142 1-35 (38)
281 KOG0686 COP9 signalosome, subu 87.5 4.5 9.9E-05 42.1 10.1 127 87-220 131-257 (466)
282 PF11207 DUF2989: Protein of u 87.4 12 0.00027 35.5 12.3 79 204-299 118-197 (203)
283 PF08626 TRAPPC9-Trs120: Trans 87.4 7.5 0.00016 46.4 13.5 241 106-361 240-536 (1185)
284 PF10952 DUF2753: Protein of u 87.3 5.7 0.00012 34.8 9.1 89 284-378 5-102 (140)
285 PF04190 DUF410: Protein of un 87.0 33 0.00071 33.7 16.8 215 120-380 2-239 (260)
286 KOG2471 TPR repeat-containing 86.5 2.1 4.6E-05 45.6 7.2 109 199-311 247-366 (696)
287 KOG4642 Chaperone-dependent E3 86.1 3.7 8E-05 40.1 8.2 105 60-180 8-112 (284)
288 PF14561 TPR_20: Tetratricopep 85.7 1.5 3.2E-05 36.1 4.7 53 280-332 22-89 (90)
289 PF10952 DUF2753: Protein of u 85.4 5.6 0.00012 34.9 8.1 62 111-172 4-76 (140)
290 COG0790 FOG: TPR repeat, SEL1 84.0 44 0.00095 32.6 17.5 162 63-255 74-266 (292)
291 PF09311 Rab5-bind: Rabaptin-l 84.0 1.5 3.2E-05 40.8 4.4 51 312-368 130-181 (181)
292 cd02680 MIT_calpain7_2 MIT: do 83.0 4.3 9.4E-05 32.3 6.1 31 292-325 18-48 (75)
293 KOG3824 Huntingtin interacting 82.9 2.8 6E-05 42.3 5.9 53 203-255 127-179 (472)
294 COG3118 Thioredoxin domain-con 82.4 57 0.0012 32.9 14.9 27 223-249 233-259 (304)
295 smart00101 14_3_3 14-3-3 homol 82.2 4.6 0.0001 39.5 7.2 57 82-138 144-201 (244)
296 KOG0687 26S proteasome regulat 82.2 28 0.00062 35.5 12.7 126 85-222 83-211 (393)
297 smart00101 14_3_3 14-3-3 homol 81.8 6.5 0.00014 38.4 8.1 64 296-361 144-208 (244)
298 cd02683 MIT_1 MIT: domain cont 81.7 15 0.00033 29.2 8.8 50 283-332 9-59 (77)
299 KOG4507 Uncharacterized conser 81.4 1.9 4.2E-05 46.7 4.5 105 199-328 614-719 (886)
300 KOG0551 Hsp90 co-chaperone CNS 81.2 9.3 0.0002 39.0 9.0 102 61-175 80-182 (390)
301 KOG4507 Uncharacterized conser 80.6 2.4 5.2E-05 46.0 4.9 96 66-175 610-705 (886)
302 cd02684 MIT_2 MIT: domain cont 80.4 16 0.00036 28.9 8.6 47 286-332 12-59 (75)
303 PF11817 Foie-gras_1: Foie gra 80.3 17 0.00036 35.3 10.5 79 83-163 155-235 (247)
304 KOG2041 WD40 repeat protein [G 80.3 1.1E+02 0.0024 34.6 22.4 57 101-169 789-845 (1189)
305 PF02259 FAT: FAT domain; Int 79.9 66 0.0014 31.9 23.0 126 202-335 156-305 (352)
306 PF15015 NYD-SP12_N: Spermatog 79.9 25 0.00054 37.1 11.7 111 228-351 178-292 (569)
307 cd02680 MIT_calpain7_2 MIT: do 79.0 3.5 7.5E-05 32.9 4.3 36 208-258 3-38 (75)
308 TIGR03504 FimV_Cterm FimV C-te 79.0 3.3 7.1E-05 29.5 3.7 25 284-308 3-27 (44)
309 PF11207 DUF2989: Protein of u 78.9 4.7 0.0001 38.2 5.8 76 83-166 123-198 (203)
310 cd02678 MIT_VPS4 MIT: domain c 78.5 28 0.0006 27.4 9.3 48 285-332 11-59 (75)
311 KOG0985 Vesicle coat protein c 78.4 88 0.0019 36.8 16.2 177 110-315 1106-1314(1666)
312 KOG2041 WD40 repeat protein [G 76.8 1.4E+02 0.003 33.8 19.4 57 281-341 797-871 (1189)
313 KOG4563 Cell cycle-regulated h 75.6 9.5 0.00021 39.3 7.2 62 279-340 40-101 (400)
314 PF11817 Foie-gras_1: Foie gra 75.5 54 0.0012 31.7 12.5 80 243-340 155-236 (247)
315 COG5159 RPN6 26S proteasome re 75.4 97 0.0021 31.4 17.6 219 80-324 17-248 (421)
316 PF10373 EST1_DNA_bind: Est1 D 75.4 5.9 0.00013 38.2 5.8 62 85-158 1-62 (278)
317 KOG0508 Ankyrin repeat protein 75.4 2.2 4.7E-05 45.2 2.7 77 246-335 315-392 (615)
318 KOG1920 IkappaB kinase complex 75.0 1.9E+02 0.0041 34.5 18.8 56 198-253 958-1026(1265)
319 cd02681 MIT_calpain7_1 MIT: do 74.9 29 0.00063 27.6 8.5 43 283-325 9-53 (76)
320 KOG2460 Signal recognition par 74.7 1.3E+02 0.0029 32.6 16.1 171 102-315 274-457 (593)
321 PF09613 HrpB1_HrpK: Bacterial 74.4 44 0.00095 30.6 10.6 46 197-242 49-94 (160)
322 PF14853 Fis1_TPR_C: Fis1 C-te 73.8 7 0.00015 28.9 4.4 29 282-310 3-31 (53)
323 PF12854 PPR_1: PPR repeat 73.6 5.6 0.00012 26.3 3.5 26 280-305 7-32 (34)
324 PRK13184 pknD serine/threonine 73.5 20 0.00044 41.6 10.1 103 201-326 484-593 (932)
325 KOG3824 Huntingtin interacting 73.1 6.7 0.00014 39.7 5.4 61 229-309 119-179 (472)
326 COG3898 Uncharacterized membra 72.6 1.3E+02 0.0029 31.7 22.7 121 119-255 95-217 (531)
327 cd02677 MIT_SNX15 MIT: domain 72.6 40 0.00088 26.7 8.8 40 287-326 13-53 (75)
328 PF04212 MIT: MIT (microtubule 72.4 22 0.00047 27.2 7.2 51 283-333 8-59 (69)
329 PF04053 Coatomer_WDAD: Coatom 72.2 40 0.00088 35.8 11.4 100 203-338 272-389 (443)
330 PF09670 Cas_Cas02710: CRISPR- 72.1 68 0.0015 33.3 12.9 54 78-137 143-198 (379)
331 cd09034 BRO1_Alix_like Protein 72.0 1.1E+02 0.0025 30.8 14.4 79 282-360 113-225 (345)
332 PF12854 PPR_1: PPR repeat 70.7 7.6 0.00016 25.6 3.7 26 108-133 7-32 (34)
333 PF14853 Fis1_TPR_C: Fis1 C-te 70.7 8.9 0.00019 28.4 4.4 32 110-141 3-34 (53)
334 KOG2114 Vacuolar assembly/sort 70.3 28 0.00061 39.5 9.8 48 208-255 350-397 (933)
335 PF09670 Cas_Cas02710: CRISPR- 69.8 87 0.0019 32.5 13.1 54 202-255 141-198 (379)
336 PF04212 MIT: MIT (microtubule 69.5 15 0.00032 28.2 5.6 34 107-140 4-37 (69)
337 PF10373 EST1_DNA_bind: Est1 D 69.3 19 0.00041 34.7 7.7 62 245-334 1-62 (278)
338 KOG2561 Adaptor protein NUB1, 69.2 89 0.0019 33.3 12.6 114 107-220 162-295 (568)
339 PF10255 Paf67: RNA polymerase 68.7 64 0.0014 34.0 11.7 69 64-136 124-192 (404)
340 KOG1538 Uncharacterized conser 68.6 1.4E+02 0.003 33.5 14.3 20 114-133 638-657 (1081)
341 KOG2114 Vacuolar assembly/sort 68.3 93 0.002 35.6 13.3 38 102-139 362-399 (933)
342 COG0790 FOG: TPR repeat, SEL1 67.5 1.3E+02 0.0027 29.3 19.5 148 78-255 53-220 (292)
343 TIGR03504 FimV_Cterm FimV C-te 67.0 9.6 0.00021 27.1 3.7 25 112-136 3-27 (44)
344 PF13041 PPR_2: PPR repeat fam 66.6 20 0.00042 25.3 5.4 43 109-154 4-46 (50)
345 PF08626 TRAPPC9-Trs120: Trans 66.2 1.3E+02 0.0027 36.3 15.0 85 241-341 360-464 (1185)
346 cd02682 MIT_AAA_Arch MIT: doma 65.0 16 0.00036 29.1 5.1 34 107-140 5-38 (75)
347 PF07720 TPR_3: Tetratricopept 64.8 20 0.00043 24.3 4.7 22 283-304 4-25 (36)
348 KOG1308 Hsp70-interacting prot 64.7 6.7 0.00014 40.1 3.4 122 203-359 125-246 (377)
349 PF12753 Nro1: Nuclear pore co 64.6 8.4 0.00018 40.1 4.2 55 297-359 328-386 (404)
350 cd02656 MIT MIT: domain contai 64.3 56 0.0012 25.3 8.1 49 284-332 10-59 (75)
351 smart00745 MIT Microtubule Int 64.2 57 0.0012 25.3 8.2 49 284-332 12-61 (77)
352 KOG2168 Cullins [Cell cycle co 63.5 1E+02 0.0022 35.3 12.5 45 106-175 620-664 (835)
353 cd02682 MIT_AAA_Arch MIT: doma 63.1 24 0.00052 28.1 5.7 39 282-320 8-48 (75)
354 PF07720 TPR_3: Tetratricopept 62.8 20 0.00044 24.2 4.5 22 229-250 4-25 (36)
355 PF12739 TRAPPC-Trs85: ER-Golg 62.7 1.9E+02 0.004 30.4 14.0 103 198-309 214-329 (414)
356 PF01535 PPR: PPR repeat; Int 61.3 13 0.00027 22.9 3.2 25 110-134 2-26 (31)
357 cd02681 MIT_calpain7_1 MIT: do 59.9 19 0.00041 28.7 4.6 32 107-138 5-36 (76)
358 PF07079 DUF1347: Protein of u 59.1 1.4E+02 0.003 32.1 11.8 45 285-332 133-177 (549)
359 PF14561 TPR_20: Tetratricopep 59.0 76 0.0016 25.9 8.2 46 86-139 8-53 (90)
360 KOG1497 COP9 signalosome, subu 58.8 1.5E+02 0.0032 30.4 11.6 106 104-219 99-211 (399)
361 KOG0551 Hsp90 co-chaperone CNS 58.7 1E+02 0.0022 31.7 10.5 153 55-257 32-184 (390)
362 PHA02537 M terminase endonucle 57.8 57 0.0012 31.7 8.4 96 204-313 95-211 (230)
363 TIGR00756 PPR pentatricopeptid 57.8 20 0.00044 22.2 3.8 26 110-135 2-27 (35)
364 cd02683 MIT_1 MIT: domain cont 56.7 26 0.00056 27.9 4.9 33 108-140 6-38 (77)
365 cd02679 MIT_spastin MIT: domai 55.6 29 0.00063 27.9 5.1 24 294-317 22-45 (79)
366 PF04053 Coatomer_WDAD: Coatom 55.3 68 0.0015 34.1 9.3 100 80-220 275-375 (443)
367 COG3947 Response regulator con 54.4 74 0.0016 32.2 8.6 72 107-182 278-349 (361)
368 cd02679 MIT_spastin MIT: domai 53.9 22 0.00048 28.6 4.1 38 108-145 8-45 (79)
369 TIGR02561 HrpB1_HrpK type III 52.5 1.8E+02 0.0039 26.5 10.0 29 197-225 49-77 (153)
370 PF01535 PPR: PPR repeat; Int 52.1 19 0.00041 22.0 2.9 25 283-307 3-27 (31)
371 smart00745 MIT Microtubule Int 51.3 43 0.00092 26.1 5.4 31 110-140 10-40 (77)
372 PRK13184 pknD serine/threonine 50.3 52 0.0011 38.4 7.9 56 282-341 514-571 (932)
373 TIGR02710 CRISPR-associated pr 49.6 3E+02 0.0065 28.8 12.6 57 233-304 137-195 (380)
374 PF13041 PPR_2: PPR repeat fam 49.6 30 0.00064 24.3 3.9 27 281-307 4-30 (50)
375 KOG3783 Uncharacterized conser 47.7 4.1E+02 0.0089 29.1 18.9 221 103-358 262-521 (546)
376 cd02678 MIT_VPS4 MIT: domain c 47.3 48 0.001 26.0 5.1 30 111-140 9-38 (75)
377 PF08969 USP8_dimer: USP8 dime 46.1 42 0.0009 28.5 4.9 41 321-368 37-77 (115)
378 PF07079 DUF1347: Protein of u 46.0 4.2E+02 0.009 28.6 17.6 132 111-256 9-158 (549)
379 PF13812 PPR_3: Pentatricopept 45.7 49 0.0011 20.6 4.2 27 109-135 2-28 (34)
380 COG3629 DnrI DNA-binding trans 44.8 2.2E+02 0.0047 28.5 10.3 71 107-181 152-222 (280)
381 PF04097 Nic96: Nup93/Nic96; 44.7 2.1E+02 0.0046 31.8 11.4 33 102-134 408-440 (613)
382 PF05053 Menin: Menin; InterP 44.2 1.2E+02 0.0025 33.4 8.8 57 282-341 279-337 (618)
383 cd02656 MIT MIT: domain contai 44.1 57 0.0012 25.3 5.1 31 110-140 8-38 (75)
384 KOG0276 Vesicle coat complex C 44.0 73 0.0016 35.2 7.3 78 111-220 617-694 (794)
385 PF08311 Mad3_BUB1_I: Mad3/BUB 42.6 75 0.0016 27.6 6.1 45 209-253 80-126 (126)
386 PF09613 HrpB1_HrpK: Bacterial 41.6 2.8E+02 0.0061 25.4 10.8 64 59-134 7-70 (160)
387 TIGR02710 CRISPR-associated pr 41.4 4.4E+02 0.0095 27.6 12.5 108 202-313 140-279 (380)
388 KOG0276 Vesicle coat complex C 40.7 2.9E+02 0.0063 30.8 11.0 25 284-308 670-694 (794)
389 cd07626 BAR_SNX9_like The Bin/ 40.6 2E+02 0.0043 27.3 9.0 83 59-144 17-116 (199)
390 KOG3783 Uncharacterized conser 40.5 5.3E+02 0.011 28.2 16.7 227 56-310 261-521 (546)
391 cd02684 MIT_2 MIT: domain cont 39.7 69 0.0015 25.3 4.9 25 116-140 14-38 (75)
392 PF08424 NRDE-2: NRDE-2, neces 38.6 4.2E+02 0.0092 26.6 15.6 126 208-357 47-183 (321)
393 PF05053 Menin: Menin; InterP 38.6 1.4E+02 0.003 32.9 8.2 70 224-308 275-346 (618)
394 PHA02537 M terminase endonucle 37.8 3.7E+02 0.008 26.1 10.5 104 238-360 95-210 (230)
395 PRK10941 hypothetical protein; 37.8 1.6E+02 0.0035 29.1 8.3 63 106-172 179-241 (269)
396 KOG2908 26S proteasome regulat 37.6 4.9E+02 0.011 27.0 12.3 100 236-359 85-185 (380)
397 PF12753 Nro1: Nuclear pore co 37.5 86 0.0019 32.9 6.4 74 244-328 329-403 (404)
398 PF09205 DUF1955: Domain of un 36.2 1.6E+02 0.0036 26.5 7.0 53 203-255 97-149 (161)
399 KOG3807 Predicted membrane pro 36.1 5.2E+02 0.011 26.9 11.6 81 232-323 281-370 (556)
400 KOG2880 SMAD6 interacting prot 36.1 1.6E+02 0.0035 30.4 7.9 72 282-358 37-108 (424)
401 KOG3364 Membrane protein invol 35.8 1.5E+02 0.0032 26.7 6.7 72 59-138 29-101 (149)
402 PF15015 NYD-SP12_N: Spermatog 35.6 1.6E+02 0.0034 31.4 7.9 102 155-256 185-292 (569)
403 PF14357 DUF4404: Domain of un 35.4 43 0.00092 27.3 3.1 24 313-336 61-84 (85)
404 PF10255 Paf67: RNA polymerase 35.3 2.5E+02 0.0054 29.6 9.5 65 110-174 124-192 (404)
405 PF10366 Vps39_1: Vacuolar sor 35.1 60 0.0013 27.5 4.1 26 283-308 42-67 (108)
406 KOG4563 Cell cycle-regulated h 34.9 70 0.0015 33.2 5.2 66 61-130 40-105 (400)
407 PRK10941 hypothetical protein; 34.0 2.4E+02 0.0053 27.9 8.8 67 189-255 178-244 (269)
408 KOG1920 IkappaB kinase complex 33.8 5.6E+02 0.012 30.8 12.6 32 283-314 1067-1099(1265)
409 KOG3364 Membrane protein invol 33.8 2.2E+02 0.0047 25.7 7.5 59 279-341 31-90 (149)
410 COG4649 Uncharacterized protei 32.6 4.4E+02 0.0095 25.0 11.2 121 110-241 96-219 (221)
411 COG3947 Response regulator con 31.9 1.9E+02 0.004 29.5 7.4 66 233-318 286-351 (361)
412 COG4976 Predicted methyltransf 31.9 66 0.0014 31.5 4.2 52 204-255 7-58 (287)
413 cd09240 BRO1_Alix Protein-inte 31.9 3.9E+02 0.0084 27.3 10.3 149 106-261 117-290 (346)
414 PF12739 TRAPPC-Trs85: ER-Golg 31.4 6.3E+02 0.014 26.4 20.8 180 109-311 209-401 (414)
415 cd02677 MIT_SNX15 MIT: domain 30.7 1.2E+02 0.0026 24.0 5.0 27 112-138 10-36 (75)
416 KOG1308 Hsp70-interacting prot 30.6 17 0.00037 37.2 0.1 84 78-173 126-209 (377)
417 smart00386 HAT HAT (Half-A-TPR 30.2 96 0.0021 18.7 3.6 28 206-233 1-28 (33)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 28.3 2.1E+02 0.0045 24.8 6.5 26 108-133 99-124 (126)
419 KOG0686 COP9 signalosome, subu 27.8 4.1E+02 0.0088 28.2 9.3 97 198-306 156-255 (466)
420 PF08969 USP8_dimer: USP8 dime 27.8 1.1E+02 0.0024 25.9 4.6 38 282-321 40-77 (115)
421 PF07219 HemY_N: HemY protein 27.8 2.4E+02 0.0053 23.5 6.7 25 197-221 64-88 (108)
422 COG3629 DnrI DNA-binding trans 27.7 4.9E+02 0.011 26.0 9.7 74 279-366 152-226 (280)
423 PF14346 DUF4398: Domain of un 26.9 2.8E+02 0.0061 22.8 6.9 60 79-138 16-75 (103)
424 COG3898 Uncharacterized membra 26.7 8E+02 0.017 26.1 22.0 81 78-173 132-215 (531)
425 KOG2422 Uncharacterized conser 26.2 9.4E+02 0.02 26.8 13.0 134 240-391 252-400 (665)
426 KOG0376 Serine-threonine phosp 26.1 64 0.0014 34.5 3.4 77 237-341 15-91 (476)
427 PF08360 TetR_C_5: QacR-like p 26.1 1.5E+02 0.0032 26.0 5.2 61 243-312 64-127 (131)
428 PF14357 DUF4404: Domain of un 26.1 43 0.00093 27.2 1.7 23 100-122 62-84 (85)
429 cd09034 BRO1_Alix_like Protein 25.1 7.1E+02 0.015 25.0 12.3 20 241-260 136-155 (345)
430 KOG0890 Protein kinase of the 25.1 1.6E+03 0.036 29.2 15.1 142 107-254 1669-1832(2382)
431 KOG1550 Extracellular protein 25.1 9.2E+02 0.02 26.3 15.1 152 79-255 262-426 (552)
432 KOG2561 Adaptor protein NUB1, 25.1 8.9E+02 0.019 26.1 14.1 101 292-399 223-346 (568)
433 KOG2581 26S proteasome regulat 24.4 8.8E+02 0.019 25.9 15.0 135 115-255 133-276 (493)
434 PF10938 YfdX: YfdX protein; 24.3 3.5E+02 0.0075 24.4 7.4 99 198-308 8-145 (155)
435 PF08238 Sel1: Sel1 repeat; I 24.2 1.6E+02 0.0034 18.9 4.0 32 63-94 2-36 (39)
436 COG1516 FliS Flagellin-specifi 23.9 3.9E+02 0.0084 23.7 7.3 50 285-334 36-86 (132)
437 PF11846 DUF3366: Domain of un 23.9 2.2E+02 0.0047 26.1 6.2 45 211-256 130-174 (193)
438 KOG2581 26S proteasome regulat 23.9 9.1E+02 0.02 25.8 15.2 158 55-225 118-280 (493)
439 COG4976 Predicted methyltransf 23.8 1.4E+02 0.0031 29.3 4.9 57 79-143 8-64 (287)
440 smart00671 SEL1 Sel1-like repe 23.5 1.2E+02 0.0025 19.2 3.1 32 63-94 2-33 (36)
441 KOG4521 Nuclear pore complex, 23.0 4.7E+02 0.01 31.5 9.5 57 198-257 926-994 (1480)
442 COG5290 IkappaB kinase complex 22.6 1.3E+03 0.027 27.0 13.8 13 208-220 828-840 (1243)
443 PF12805 FUSC-like: FUSC-like 21.2 4.5E+02 0.0098 25.8 8.3 43 292-337 237-279 (284)
444 KOG0376 Serine-threonine phosp 21.1 89 0.0019 33.4 3.3 97 203-324 15-111 (476)
445 PF09797 NatB_MDM20: N-acetylt 21.1 8.8E+02 0.019 24.6 13.8 90 75-180 192-286 (365)
446 COG5290 IkappaB kinase complex 21.0 1.4E+03 0.029 26.8 13.7 57 284-340 939-1002(1243)
447 KOG1258 mRNA processing protei 21.0 1.2E+03 0.025 25.9 19.7 178 103-310 292-471 (577)
448 cd07625 BAR_Vps17p The Bin/Amp 20.2 8E+02 0.017 23.8 10.1 25 317-341 70-94 (230)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=9.9e-32 Score=282.13 Aligned_cols=278 Identities=21% Similarity=0.257 Sum_probs=239.2
Q ss_pred cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 54 ~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
.|..+|.+.-...+++..|. .+|+|+.|++++++|+.+..+..|.+||.++..++++|.+|..+|+|.+|+.+|++
T Consensus 191 ~~~~~P~~~~~~~~La~~y~----~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~ 266 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYA----VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE 266 (508)
T ss_pred cccCCchHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 57888999988889999983 48999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhh----HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHH
Q 013549 134 VENFKNSILGVR----VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE 209 (441)
Q Consensus 134 al~i~~~~lg~~----~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~ 209 (441)
|++|.+..+|.+ +.+++||+.+|..+|++.+|+.+++++++|.++....
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~--------------------------- 319 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA--------------------------- 319 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc---------------------------
Confidence 999999988763 3577788888877788888877777777776652210
Q ss_pred HHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH-HHHHHHH
Q 013549 210 SAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQ 288 (441)
Q Consensus 210 eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~-al~nLg~ 288 (441)
.++.......+++.++..+++|++|+.+|++++.|.. . .+|. +++.++ ..+|||.
T Consensus 320 -----------~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~-----~~g~-----~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 320 -----------SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---D-----APGE-----DNVNLAKIYANLAE 375 (508)
T ss_pred -----------ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---h-----hccc-----cchHHHHHHHHHHH
Confidence 1122233456778899999999999999999999964 2 4452 332333 5689999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcch
Q 013549 289 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV 368 (441)
Q Consensus 289 ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~ 368 (441)
+|..+|+|+||+++|++|+.|.++.+|..|+.++..+++||..|.+.+++++| +.+|.+++.|++..+++||++
T Consensus 376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a------~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA------EQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH------HHHHHHHHHHHHHhCCCCCch
Confidence 99999999999999999999999999999999999999999999999998876 999999999998889999999
Q ss_pred HhhhccHHHHHHHhccHHHHHHHh
Q 013549 369 ETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 369 ~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
...+.||+.+|..+|+|+.|..+.
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999999999999998776654
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.97 E-value=5.6e-30 Score=268.93 Aligned_cols=245 Identities=20% Similarity=0.250 Sum_probs=200.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 54 ~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
.|-+||.|+..++++|.+| + ++++|+||+.+|++||+|.+..+|++||.+|.+++|||.+|..+|||+||.+++++
T Consensus 233 ~G~~hl~va~~l~~~a~~y-~---~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 233 SGLKHLVVASMLNILALVY-R---SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER 308 (508)
T ss_pred cCccCHHHHHHHHHHHHHH-H---HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 5789999999999999998 3 67999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhh---hH-HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHH
Q 013549 134 VENFKNSILGV---RV-AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE 209 (441)
Q Consensus 134 al~i~~~~lg~---~~-~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~ 209 (441)
|+.|.+..+|. ++ ..+.+++. ++..+++|+
T Consensus 309 Al~I~~~~~~~~~~~v~~~l~~~~~----------------------------------------------~~~~~~~~E 342 (508)
T KOG1840|consen 309 ALEIYEKLLGASHPEVAAQLSELAA----------------------------------------------ILQSMNEYE 342 (508)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHH----------------------------------------------HHHHhcchh
Confidence 99999875433 12 22333333 344555666
Q ss_pred HHHHHHHhhhh-----c---cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH
Q 013549 210 SAESFFKGLQE-----E---EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA 281 (441)
Q Consensus 210 eAe~l~~~aL~-----~---~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~ 281 (441)
+|+.+|+++++ . +.+.+..-.+||.+|+.+|+|+||+++|++||.|.++..+ ....+ .-.
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~---~~~~~---------~~~ 410 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG---KKDYG---------VGK 410 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc---CcChh---------hhH
Confidence 66666665555 1 1122334468899999999999999999999999755443 11111 124
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc-
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA- 360 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~- 360 (441)
++++||..|...++|.+|+++|.++..|. +.+|++||+|-.++-|||.+|..||+||+| +.+..+++.+++.
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a------~~~~~~~~~~~~~~ 483 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAA------EELEEKVLNAREQR 483 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHH------HHHHHHHHHHHHHc
Confidence 68999999999999999999999999999 999999999999999999999999999997 9999999999864
Q ss_pred CCCCCcc
Q 013549 361 PPLESEG 367 (441)
Q Consensus 361 ~~~~~~~ 367 (441)
.+..+|.
T Consensus 484 ~~~~~~~ 490 (508)
T KOG1840|consen 484 LGTASPT 490 (508)
T ss_pred CCCCCcc
Confidence 4445554
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.6e-25 Score=231.89 Aligned_cols=148 Identities=17% Similarity=0.196 Sum_probs=78.1
Q ss_pred HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549 204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 283 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al 283 (441)
..|+.+||+.+|.++|.-.+.++.++.|+|++|..||++++|..+|++||+++ - .+ .++.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~---p------~~-----------aaa~ 391 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF---P------EF-----------AAAH 391 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---h------hh-----------hhhh
Confidence 44555555555555555444455555555555555555555555555555551 0 11 1234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCC
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL 363 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~ 363 (441)
+|||.+|..||++++|..+|+.||.|. |..+.+|+|+|.+|..+|+.+.| ...|.||+.|.
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke~g~v~~A------~q~y~rAI~~n----- 452 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIK--------PTFADALSNMGNTYKEMGDVSAA------IQCYTRAIQIN----- 452 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcC--------chHHHHHHhcchHHHHhhhHHHH------HHHHHHHHhcC-----
Confidence 555555555555555555555555542 55555555555555555555444 55555554442
Q ss_pred CCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 364 ESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 364 ~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
|..+..-+||+.+|...|.-.+|+..+
T Consensus 453 --Pt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 453 --PTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred --cHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 334444455555555555555555543
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.4e-25 Score=229.57 Aligned_cols=307 Identities=15% Similarity=0.131 Sum_probs=215.2
Q ss_pred ccccccCCCCCcccccccCCCCccc-cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhH
Q 013549 29 CLLSASTLPPPRRLVHDANGNGNRI-NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWR 107 (441)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~ 107 (441)
||.+....+++...|..+ + .-|+. +-...+++.++ |.+|+..||-.+|.+|+.++ |..
T Consensus 159 al~~~~~~~~a~~~~~~a------lqlnP~l---~ca~s~lgnLl----ka~Grl~ea~~cYlkAi~~q--------p~f 217 (966)
T KOG4626|consen 159 ALVTQGDLELAVQCFFEA------LQLNPDL---YCARSDLGNLL----KAEGRLEEAKACYLKAIETQ--------PCF 217 (966)
T ss_pred HHHhcCCCcccHHHHHHH------HhcCcch---hhhhcchhHHH----HhhcccchhHHHHHHHHhhC--------Cce
Confidence 555666666666666655 4 23333 33334455555 35677888888888888644 456
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
|.+..|||.++-.+|+..+|+.+|++|+++.+.-+ .++.||+++|..++.++.|..-|.+++.+.-..-
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~----dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A------- 286 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL----DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA------- 286 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch----HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-------
Confidence 77788888888888888888888888888776643 2677888888888888888888887764432111
Q ss_pred hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549 188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 267 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~ 267 (441)
... ..++.+|..||..|-|+..|+|+|+..+..+.+-.|+|+.+...|+..||+.+|.+||...
T Consensus 287 ~a~-----gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~----------- 350 (966)
T KOG4626|consen 287 VAH-----GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC----------- 350 (966)
T ss_pred hhc-----cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-----------
Confidence 111 1235567778888888888888888666677777788888888888888888888888771
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 013549 268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 347 (441)
Q Consensus 268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~A 347 (441)
|. ...+++|||++|..||++++|..+|++||+++ |..+...+|||.+|.+||++++|
T Consensus 351 -------p~--hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~A------ 407 (966)
T KOG4626|consen 351 -------PN--HADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDA------ 407 (966)
T ss_pred -------Cc--cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHH------
Confidence 01 13567888888888888888888888888765 77788888888888888887776
Q ss_pred HHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh----hchhhHHHHHHHHHHHHHhcc
Q 013549 348 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ----QNRKDEGERMKRWAEAAWRNR 413 (441)
Q Consensus 348 e~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~----~~r~~eae~~~~~a~~~~~~~ 413 (441)
...|+.||.|- |..+..++|++.+|.-+|+-..|+..+ +-+-.-||.-.+.|..+.-.+
T Consensus 408 i~~YkealrI~-------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 408 IMCYKEALRIK-------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG 470 (966)
T ss_pred HHHHHHHHhcC-------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC
Confidence 77888887763 566778888888888888877777654 234445565555555544333
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.4e-20 Score=204.67 Aligned_cols=262 Identities=18% Similarity=0.171 Sum_probs=214.1
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..++|++|+.+|++++.+. ..+|..+..++++|.++..+|+|++|+..|++++.+.+... .++.+++.++.
T Consensus 306 ~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~----~~~~~la~~~~ 376 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT----QSYIKRASMNL 376 (615)
T ss_pred hhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHH
Confidence 5678999999999999754 45788999999999999999999999999999998876532 36778899999
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH 237 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~ 237 (441)
.+|++++|..++++++++. +.. .. .....|.++...|+|++|+..|++++...+.......++|.++.
T Consensus 377 ~~g~~~eA~~~~~~al~~~----p~~---~~-----~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLN----SED---PD-----IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC----CCC---HH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 9999999999999987652 111 11 22346788889999999999999999977767777788999999
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
.+|+|++|+..|++++.+. -. ....++++|.+|..+|+|++|++.|++|+.+..+ ..+.
T Consensus 445 ~~g~~~eA~~~~~~al~~~---P~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~-~~~~ 503 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF---PE-----------------APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE-TKPM 503 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC---CC-----------------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc-cccc
Confidence 9999999999999999872 10 1235789999999999999999999999998765 3445
Q ss_pred CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
|+.+...++..+.+|..+|++++| +.+|++|+++- |+....+.+++.++..+|+|++|+..+++
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA------~~~~~kAl~l~-------p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEA------ENLCEKALIID-------PECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHhcC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666777777777777778998887 88999998862 23234567889999999999999987644
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.1e-18 Score=189.99 Aligned_cols=187 Identities=14% Similarity=0.131 Sum_probs=136.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
.+.++..+|+|++|+..|++++...+..+.+...+|.++..+|+|++|+..|++++++. |+
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------------------P~- 431 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------------------PD- 431 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------cc-
Confidence 46666778888888888888888666666777788888888889999999988888771 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
....+.+||.++..+|+|++|+.+|++++.+ +|.....++++|.+|..+|++++| +..|++|+++
T Consensus 432 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A------~~~~~~Al~l 496 (615)
T TIGR00990 432 -FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--------FPEAPDVYNYYGELLLDQNKFDEA------IEKFDTAIEL 496 (615)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHH------HHHHHHHHhc
Confidence 1234678999999999999999999999874 466667889999999999999887 8999999988
Q ss_pred hhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchh----hHHHHHHHHHHHHHhccChhHH
Q 013549 358 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK----DEGERMKRWAEAAWRNRRVSLA 418 (441)
Q Consensus 358 ~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~----~eae~~~~~a~~~~~~~r~~~~ 418 (441)
.......+..+...++....++...|+|++|+...++.. +-...+...+..++..+++..|
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 643223344444444444444555789999988764321 1134455677788888876554
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.3e-17 Score=182.90 Aligned_cols=265 Identities=13% Similarity=0.051 Sum_probs=152.9
Q ss_pred CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
-|+|++. +.+++.+. . ..|++++|+..|++++.+. |++ ..++..+|.++..+|++++|++.|+++
T Consensus 72 ~p~~~~~---l~~l~~~~-l---~~g~~~~A~~~l~~~l~~~-----P~~---~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 72 AKNGRDL---LRRWVISP-L---ASSQPDAVLQVVNKLLAVN-----VCQ---PEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CCCchhH---HHHHhhhH-h---hcCCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666655 44555554 2 3689999999999999744 344 456899999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
+.+.+.. ...+..++.++..+|++++|...+++.+... +... ... .....+..+|++++|+..
T Consensus 137 l~l~P~~----~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----P~~~---~a~------~~~~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 137 WLAFSGN----SQIFALHLRTLVLMDKELQAISLARTQAQEV----PPRG---DMI------ATCLSFLNKSRLPEDHDL 199 (656)
T ss_pred HHhCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----CCCH---HHH------HHHHHHHHcCCHHHHHHH
Confidence 8887653 2366778888999999999988777654221 1100 000 001123456666666666
Q ss_pred HHhhhhccC-CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549 215 FKGLQEEEG-CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 293 (441)
Q Consensus 215 ~~~aL~~~~-~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q 293 (441)
+++++...+ ........++.++..+|++++|+..|++++++ .. . ....+.+||.+|..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---~p-----~------------~~~~~~~Lg~~l~~~ 259 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR---GL-----D------------GAALRRSLGLAYYQS 259 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-----C------------CHHHHHHHHHHHHHc
Confidence 666555221 11112223344555566666666666665554 00 0 012345566666666
Q ss_pred CCHHH----HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549 294 GNFGD----AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 369 (441)
Q Consensus 294 G~y~e----Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~ 369 (441)
|+|++ |+.+|++++.+. |+....+.++|.+|..+|++++| ...|++++++ .|+++
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA------~~~l~~al~l----~P~~~--- 318 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKA------IPLLQQSLAT----HPDLP--- 318 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHh----CCCCH---
Confidence 66654 444444444422 44445555555666666665554 5555555543 12222
Q ss_pred hhhccHHHHHHHhccHHHHHHHh
Q 013549 370 TKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 370 ~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
....+++.++..+|+|++|+...
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH
Confidence 22334555555555555555443
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=3.5e-17 Score=166.78 Aligned_cols=255 Identities=17% Similarity=0.135 Sum_probs=194.0
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..|++++|+..|++++.. +|....++..+|.++..+|+|++|+..+++++.............+..++.+|.
T Consensus 47 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred hcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 468899999999999974 345567899999999999999999999999876432111112346788999999
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCc-----hHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCT-----GSAALSY 232 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~-----~~~a~~~ 232 (441)
.+|++++|..+++++++. .+. . ..+....+.++..+|+|++|+.+|++++...+.. ......+
T Consensus 119 ~~g~~~~A~~~~~~~l~~----~~~---~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE----GDF---A-----EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HCCCHHHHHHHHHHHHcC----Ccc---h-----HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 999999999999888643 110 0 1112234666778999999999999998833222 1223467
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
+.++..+|++++|+.+|++++++. .. ...+...||.+|..+|++++|.++|++++.+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~---p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAAD---PQ-----------------CVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHC---cC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 888999999999999999999871 11 1235678999999999999999999999875
Q ss_pred hhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549 313 LFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSV 391 (441)
Q Consensus 313 ~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~ 391 (441)
+|. +..+++.|+.+|..+|++++| ...+++++++. |+.+ ...+++.++..+|++++|+..
T Consensus 244 -----~p~~~~~~~~~l~~~~~~~g~~~~A------~~~l~~~~~~~----p~~~----~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 244 -----DPEYLSEVLPKLMECYQALGDEAEG------LEFLRRALEEY----PGAD----LLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred -----ChhhHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCch----HHHHHHHHHHHhCCHHHHHHH
Confidence 233 356788999999999999987 78888887762 2221 235788899999999999887
Q ss_pred hhc
Q 013549 392 QQN 394 (441)
Q Consensus 392 ~~~ 394 (441)
...
T Consensus 305 l~~ 307 (389)
T PRK11788 305 LRE 307 (389)
T ss_pred HHH
Confidence 643
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=2.4e-17 Score=180.97 Aligned_cols=267 Identities=12% Similarity=-0.009 Sum_probs=201.5
Q ss_pred CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
.|++++. ..++|..+. ..|++++|+..|++++.+. |+-..++.+++.++..+|++++|+..++++
T Consensus 106 ~P~~~~a---~~~la~~l~----~~g~~~~Ai~~l~~Al~l~--------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 106 NVCQPED---VLLVASVLL----KSKQYATVADLAEQAWLAF--------SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred CCCChHH---HHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 4666554 566777763 3689999999999999754 334557888999999999999999999988
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
+...+... ..+..+ ..+..+|++++|...+++++... .. .. .. ...+.+.++..+|++++|+..
T Consensus 171 ~~~~P~~~----~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~---~~-~~---~~----~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 171 AQEVPPRG----DMIATC-LSFLNKSRLPEDHDLARALLPFF---AL-ER---QE----SAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred HHhCCCCH----HHHHHH-HHHHHcCCHHHHHHHHHHHHhcC---CC-cc---hh----HHHHHHHHHHHCCCHHHHHHH
Confidence 76655421 123333 34678899999999888775332 10 00 00 112345667789999999999
Q ss_pred HHhhhhccCCchHHHHHHHHHHHHccChHH----HHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549 215 FKGLQEEEGCTGSAALSYGEYLHATRNFLL----AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 290 (441)
Q Consensus 215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~e----A~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly 290 (441)
|++++...+....+..++|.++..+|++++ |+.+|++++++. |+ ...++.+||.++
T Consensus 235 ~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~------------------P~--~~~a~~~lg~~l 294 (656)
T PRK15174 235 GESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN------------------SD--NVRIVTLYADAL 294 (656)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC------------------CC--CHHHHHHHHHHH
Confidence 999999777777788899999999999996 899999999881 11 134678999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHh
Q 013549 291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVET 370 (441)
Q Consensus 291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~ 370 (441)
..+|+|++|+..|++++.+ +|+......+||.+|..+|++++| ...|+++++. .|+++ .
T Consensus 295 ~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA------~~~l~~al~~----~P~~~---~ 353 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAA------SDEFVQLARE----KGVTS---K 353 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHh----Cccch---H
Confidence 9999999999999999985 455556678899999999999987 7888888775 22322 2
Q ss_pred hhccHHHHHHHhccHHHHHHHhh
Q 013549 371 KVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 371 ~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
...+++.++...|++++|+....
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 33446778889999999988753
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.80 E-value=5e-17 Score=178.76 Aligned_cols=288 Identities=14% Similarity=0.139 Sum_probs=190.5
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|++++|+.++++++... |....++..+|.+|...|+|++|+..|++++...+.. ...+..++.++..
T Consensus 580 ~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 647 (899)
T TIGR02917 580 KGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS----ALALLLLADAYAV 647 (899)
T ss_pred CCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHH
Confidence 456666666666665422 2223456666666666666666666666665554322 1234455555666
Q ss_pred cCCcchhHHHHHHHHHHHHhcCC------------Ccchhhhhh----------HhHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKP------------ENYKTYGAV----------NSRANAVKGLVELAHGNLESAESFFK 216 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~------------~~~~~~~~l----------~~~a~al~gl~~~~qG~y~eAe~l~~ 216 (441)
+|++++|..++++++.+...... ..++++..+ ........|.++..+|+|++|...|+
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666555433110000 000000000 01112235667778899999999999
Q ss_pred hhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCH
Q 013549 217 GLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF 296 (441)
Q Consensus 217 ~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y 296 (441)
+++...+.. .+..+++.++..+|++++|+..++++++.. . + ...+++++|.+|..+|++
T Consensus 728 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~---------------~--~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 728 KALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH---P---------------N--DAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C---------------C--CHHHHHHHHHHHHHCcCH
Confidence 888844333 556778888888999999999998888751 1 1 124578999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHH
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTD 376 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~ 376 (441)
++|+++|+++++. +|.-..+++++|.+|..+|+ .+| ..+|++++++. ++++. .+++++
T Consensus 787 ~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A------~~~~~~~~~~~----~~~~~---~~~~~~ 844 (899)
T TIGR02917 787 DKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRA------LEYAEKALKLA----PNIPA---ILDTLG 844 (899)
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHH------HHHHHHHHhhC----CCCcH---HHHHHH
Confidence 9999999999975 45556778999999999999 665 88999998863 34443 456789
Q ss_pred HHHHHhccHHHHHHHhhchhh----HHHHHHHHHHHHHhccChhHHHHh
Q 013549 377 IVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEAL 421 (441)
Q Consensus 377 ~~~~~~g~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~~~~~l 421 (441)
.++..+|++++|+....+-.+ ..+.+...+..+|+.++...+..+
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999997644333 246666789999999998777654
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=1.5e-16 Score=162.08 Aligned_cols=246 Identities=17% Similarity=0.167 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~ 138 (441)
|+.......++.++. ..|+|++|+.++++++..- .........++.+||.+|..+|+|++|+..|+++++..
T Consensus 66 p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 137 (389)
T PRK11788 66 PETVELHLALGNLFR----RRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG 137 (389)
T ss_pred cccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 344455666777763 3689999999999998631 11223456789999999999999999999999997653
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218 (441)
Q Consensus 139 ~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a 218 (441)
+. ...++..++.++..+|++++|..++++++... +.... ... .......+.++..+|++++|+.+|+++
T Consensus 138 ~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~--~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 138 DF----AEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----GDSLR--VEI-AHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred cc----hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCcch--HHH-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 32 23467889999999999999999988876432 11110 001 111123466677899999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549 219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 298 (441)
Q Consensus 219 L~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e 298 (441)
+...+....+...++.++..+|++++|..+|++++++- |.. ...++..|+.+|..+|++++
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------p~~-~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD------------------PEY-LSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------------------hhh-HHHHHHHHHHHHHHcCCHHH
Confidence 98655555667788999999999999999999998761 000 12356789999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 299 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
|..++++++.+ +|+... +..++.+|..+|++++| ..+++++++.
T Consensus 268 A~~~l~~~~~~--------~p~~~~-~~~la~~~~~~g~~~~A------~~~l~~~l~~ 311 (389)
T PRK11788 268 GLEFLRRALEE--------YPGADL-LLALAQLLEEQEGPEAA------QALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHh--------CCCchH-HHHHHHHHHHhCCHHHH------HHHHHHHHHh
Confidence 99999999886 344333 37899999999999987 8899998876
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=3.7e-16 Score=181.48 Aligned_cols=293 Identities=12% Similarity=0.057 Sum_probs=191.2
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCch------hHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES------WRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~------~~a~~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
+..+..+|.++. .+|+|++|+.+|++++.+........+. .....+..+|..+..+|++++|++.|++++
T Consensus 303 ~~a~~~Lg~~~~----~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 303 SEALGALGQAYS----QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344667777773 3689999999999999865332211110 012234567889999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC-----------CcchhhhhhH-------------
Q 013549 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP-----------ENYKTYGAVN------------- 191 (441)
Q Consensus 136 ~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~-----------~~~~~~~~l~------------- 191 (441)
.+.+.. ..++..|+.++..+|++++|+.++++++++.-.... ..++++....
T Consensus 379 ~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 379 QVDNTD----SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 887643 246778999999999999999999999865211100 0000000000
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549 192 ------SRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 265 (441)
Q Consensus 192 ------~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~ 265 (441)
.......+.++..+|++++|+..|++++...+..+.+...+|.+|..+|++++|+..|+++++.. -. +.
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---P~--~~ 529 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---PN--DP 529 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC--CH
Confidence 00001134556689999999999999999777777788899999999999999999999998761 11 00
Q ss_pred CC-c---------c-------------ccccch--hH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 266 NT-L---------G-------------SCNMAL--EE----VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 266 ~~-l---------g-------------~~~~~~--~~----~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
.. + + .....+ .. +.......++..+..+|++++|+.+++
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~------------ 597 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR------------ 597 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH------------
Confidence 00 0 0 000000 00 000012345666677777777766654
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
.||.....+.+||.+|..+|++++| +..|++++++. |+++ ..+.+++.++..+|+|++|+...
T Consensus 598 ~~p~~~~~~~~La~~~~~~g~~~~A------~~~y~~al~~~----P~~~---~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 598 QQPPSTRIDLTLADWAQQRGDYAAA------RAAYQRVLTRE----PGNA---DARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCH---HHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455555677889999999998887 78888887752 3333 24456777777777777776544
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=2.7e-16 Score=172.95 Aligned_cols=267 Identities=21% Similarity=0.208 Sum_probs=150.6
Q ss_pred HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh
Q 013549 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (441)
Q Consensus 63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l 142 (441)
.....++..+. ..|++++|+.+|++++.+. |....++.++|.++...|++++|++.|++++...+..
T Consensus 466 ~~~~~l~~~~~----~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~- 532 (899)
T TIGR02917 466 SLHNLLGAIYL----GKGDLAKAREAFEKALSIE--------PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN- 532 (899)
T ss_pred HHHHHHHHHHH----hCCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-
Confidence 34455666652 3567888888888887643 2334567778888888888888888888876655432
Q ss_pred hhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Q 013549 143 GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE 222 (441)
Q Consensus 143 g~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~ 222 (441)
..++..++.++...|++++|..++++++....... . .....+.++..+|++++|..++++++...
T Consensus 533 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 533 ---LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI-------E-----PALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-------h-----HHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 23556677777777777777777766643211000 0 00112333445555555555555555543
Q ss_pred CCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013549 223 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 302 (441)
Q Consensus 223 ~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l 302 (441)
+....+...++.++..+|++++|+..|+++++. ... ...++..+|.+|..+|++++|...
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL---QPD-----------------SALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----------------ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444445555555555555555555555544 000 011234455555555555555555
Q ss_pred HHHHHHHHHH--------------------------hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 303 LTRTLTKTEE--------------------------LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 303 ~~rAL~i~e~--------------------------~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
|++++.+... .+...+|.....+..+|.+|..+|++++| ...|++++.
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~~~ 731 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA------IQAYRKALK 731 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH------HHHHHHHHh
Confidence 5555443211 11223455566677788888888888876 777777766
Q ss_pred HhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549 357 FLKAPPLESEGVETKVDRTDIVALARGGYAEALSV 391 (441)
Q Consensus 357 i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~ 391 (441)
+.. +. ..+.+++.++...|++.+|+..
T Consensus 732 ~~~----~~----~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 732 RAP----SS----QNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred hCC----Cc----hHHHHHHHHHHHCCCHHHHHHH
Confidence 521 11 2334556666666666666543
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.76 E-value=8.4e-16 Score=178.51 Aligned_cols=293 Identities=15% Similarity=0.103 Sum_probs=201.4
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh----------HH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR----------VA 147 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~----------~~ 147 (441)
..|+|++|+..|++++.+. |....++..||.+|..+|+|++|+..|++++++.+...... ..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN--------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 4689999999999999854 33467899999999999999999999999998876532110 01
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchH
Q 013549 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGS 227 (441)
Q Consensus 148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~ 227 (441)
....++..+..+|++++|..++++++.+. +. + ..+...+|.++..+|++++|+.+|++++...+....
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~----P~---~-----~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD----NT---D-----SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CC---C-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 22345667889999999999999987652 11 1 112234577888999999999999999984333322
Q ss_pred HHHH------------------------------------------HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549 228 AALS------------------------------------------YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 265 (441)
Q Consensus 228 ~a~~------------------------------------------~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~ 265 (441)
+... +|.++..+|++++|+..|++++++.
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------- 491 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--------- 491 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------
Confidence 2222 3455667899999999999998871
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhH
Q 013549 266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALL 345 (441)
Q Consensus 266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~ 345 (441)
|+ ......+||.+|..+|++++|+..|++++.+ -|++| ..+..+|..+..+|++++|....
T Consensus 492 ---------P~--~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-----~P~~~---~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 492 ---------PG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-----KPNDP---EQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred ---------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHhCCCHHHHHHHH
Confidence 11 1234678999999999999999999998863 23343 44556667777777777663221
Q ss_pred HH-------------------------------HHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 346 IQ-------------------------------EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 346 ~A-------------------------------e~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
.. .+-+..|+++++. .|+++ ....+++.++..+|+|++|+..+..
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~---~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPST---RIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCc---hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 10 1112334444442 23333 3445789999999999999887643
Q ss_pred hhh----HHHHHHHHHHHHHhccChhHHHHhc
Q 013549 395 RKD----EGERMKRWAEAAWRNRRVSLAEALN 422 (441)
Q Consensus 395 r~~----eae~~~~~a~~~~~~~r~~~~~~l~ 422 (441)
-.. -.+.+...+..+...+++..|.+.-
T Consensus 629 al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 629 VLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 221 1466667777777777776665443
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=4.1e-16 Score=176.78 Aligned_cols=264 Identities=14% Similarity=0.027 Sum_probs=197.3
Q ss_pred CCchH--HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 56 LNSNP--VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 56 ~~h~~--~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
|..|+ .+....+++.++. .|++++|+..|.+++... +++ .....+|.++...|+|++|+..|++
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~-----~~~~~eAi~a~~~Al~~~-----Pd~----~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYR-----DTLPGVALYAWLQAEQRQ-----PDA----WQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHhC-----Cch----HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555 6778889999872 368999999999999755 222 1366778888999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES 213 (441)
Q Consensus 134 al~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~ 213 (441)
++...+.. ..+.+++.++.+.|+..+|..++++++++. +..+ .+ ....+.....+|++++|+.
T Consensus 535 a~~~~p~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l~----P~~~----~l----~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 535 ISLHDMSN-----EDLLAAANTAQAAGNGAARDRWLQQAEQRG----LGDN----AL----YWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HhccCCCc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CccH----HH----HHHHHHHHHhCCCHHHHHH
Confidence 75543221 235677888999999999999999887542 2111 00 0111222235699999999
Q ss_pred HHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549 214 FFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 293 (441)
Q Consensus 214 l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q 293 (441)
+|++++...+. ..+..++|.++..+|++++|+..|++++++. |+ ...+.++||.++..+
T Consensus 598 ~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------------------Pd--~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 598 DLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE------------------PN--NSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CC--CHHHHHHHHHHHHHC
Confidence 99999996664 6777899999999999999999999999981 11 124678999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhc
Q 013549 294 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD 373 (441)
Q Consensus 294 G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~ 373 (441)
|++++|+++|++|+.+ +|+-...+.|||.+|..+|++++| +..|++|+++. |+.+....
T Consensus 657 G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA------~~~l~~Al~l~-------P~~a~i~~ 715 (987)
T PRK09782 657 GDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAAT------QHYARLVIDDI-------DNQALITP 715 (987)
T ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHhcC-------CCCchhhh
Confidence 9999999999999986 466667899999999999999987 89999998775 22222223
Q ss_pred cHHHHHHHhccHHHHHHHh
Q 013549 374 RTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 374 nl~~~~~~~g~yaeal~~~ 392 (441)
-.+.+...+.++..+....
T Consensus 716 ~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 716 LTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=8.8e-15 Score=166.03 Aligned_cols=250 Identities=10% Similarity=-0.053 Sum_probs=190.7
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESW--RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~--~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~ 156 (441)
.|++.++...++...... +..|. -+.++.++|.++.. |++.+|+..|.+++...+... ....++..+
T Consensus 451 ~~~~~~~~~~~~~~~~al-----~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-----~~L~lA~al 519 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLL-----GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-----QHRAVAYQA 519 (987)
T ss_pred HhhhhhhhhhHHHHHHhc-----ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----HHHHHHHHH
Confidence 456666666666666544 34556 78899999999987 999999999999987765421 233345556
Q ss_pred HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL 236 (441)
Q Consensus 157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~ 236 (441)
.+.|++++|...+++++.. .+. . ... ...+.++..+|++++|+.+|++++...+........++..+
T Consensus 520 ~~~Gr~eeAi~~~rka~~~----~p~-~---~a~-----~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH----DMS-N---EDL-----LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc----CCC-c---HHH-----HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 7899999999998876321 110 0 111 23466678899999999999999996555555555555555
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
..+|++++|+.+|++|+++. |+ ...+.++|.++..+|++++|+..|++++.+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~------------------P~---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------- 638 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIA------------------PS---ANAYVARATIYRQRHNVPAAVSDLRAALEL------- 638 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC------------------CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 56799999999999999881 11 135789999999999999999999999987
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
+|+-...++|||.++..+|++++| +..|++|+++ .|+++ ....|++.++..+|++++|+....+
T Consensus 639 -~Pd~~~a~~nLG~aL~~~G~~eeA------i~~l~~AL~l----~P~~~---~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 639 -EPNNSNYQAALGYALWDSGDIAQS------REMLERAHKG----LPDDP---ALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHh----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 355557899999999999999887 8899999887 24444 4677999999999999999886533
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=1.9e-14 Score=132.78 Aligned_cols=196 Identities=18% Similarity=0.117 Sum_probs=155.3
Q ss_pred CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (441)
Q Consensus 102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~ 181 (441)
.+.+..+..+.++|..|..+|+|++|+..+++++...+.. ...+..++.++..+|++++|..++++++++....
T Consensus 25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-- 98 (234)
T TIGR02521 25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD----YLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-- 98 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Confidence 4556678999999999999999999999999998776543 2366778999999999999999999987542111
Q ss_pred CcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc--cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh
Q 013549 182 ENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE--EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ 259 (441)
Q Consensus 182 ~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~--~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~ 259 (441)
.......+.++..+|+|++|+.+|++++.. .+.......+++.++..+|++++|..+|++++.+.
T Consensus 99 ----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 165 (234)
T TIGR02521 99 ----------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--- 165 (234)
T ss_pred ----------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 012234577788999999999999999983 23334566778999999999999999999999871
Q ss_pred cccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchh
Q 013549 260 KDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 339 (441)
Q Consensus 260 ~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~e 339 (441)
.. . ..++..+|.++..+|+|++|..++++++.+ .+.+| ..+..++.++..+|+.+
T Consensus 166 ~~-----~------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 166 PQ-----R------------PESLLELAELYYLRGQYKDARAYLERYQQT-----YNQTA---ESLWLGIRIARALGDVA 220 (234)
T ss_pred cC-----C------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhhHH
Confidence 11 1 134679999999999999999999999987 23343 44557789999999988
Q ss_pred hh
Q 013549 340 HS 341 (441)
Q Consensus 340 eA 341 (441)
+|
T Consensus 221 ~a 222 (234)
T TIGR02521 221 AA 222 (234)
T ss_pred HH
Confidence 87
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.8e-14 Score=152.03 Aligned_cols=290 Identities=18% Similarity=0.169 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
-.-|-.+|..| +.- ++-+..+|+.+|++ +. ..|+.|.-++.++|..|+++++|++|+..|+.+-++.+--
T Consensus 317 ~~llr~~~~~~-~~~-s~y~~~~A~~~~~k-lp-------~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r 386 (638)
T KOG1126|consen 317 MELLRGLGEGY-RSL-SQYNCREALNLFEK-LP-------SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR 386 (638)
T ss_pred HHHHHHHHHHH-HHH-HHHHHHHHHHHHHh-hH-------HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33344477776 333 67778899999998 65 4589999999999999999999999999999986655432
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Q 013549 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE 221 (441)
Q Consensus 142 lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~ 221 (441)
+ ..++-...+.+.+.+..+-..+++..++.. +..|+.| -..|..+..|+++++|+++|+||+..
T Consensus 387 v----~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-~~sPesW-----------ca~GNcfSLQkdh~~Aik~f~RAiQl 450 (638)
T KOG1126|consen 387 V----KGMEIYSTTLWHLQDEVALSYLAQDLIDTD-PNSPESW-----------CALGNCFSLQKDHDTAIKCFKRAIQL 450 (638)
T ss_pred c----cchhHHHHHHHHHHhhHHHHHHHHHHHhhC-CCCcHHH-----------HHhcchhhhhhHHHHHHHHHHHhhcc
Confidence 2 122222333334444444344443332111 0112112 23466677788899999999988884
Q ss_pred cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013549 222 EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 301 (441)
Q Consensus 222 ~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~ 301 (441)
++...-+-.-+|-=+..+-.|+.|...|++||.+ . |.| -.+++.||.+|.+|++|+.|+-
T Consensus 451 dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---~---------------~rh--YnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 451 DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---D---------------PRH--YNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---C---------------chh--hHHHHhhhhheeccchhhHHHH
Confidence 4433222111232334567888888888888876 1 222 3577888999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH
Q 013549 302 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA 381 (441)
Q Consensus 302 l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~ 381 (441)
+|++|++| .|.-...+..+|.+|.+.|+.|+| ..+|++|+.+-. .+++..+ +.+.++..
T Consensus 511 ~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~A------L~~~~~A~~ld~------kn~l~~~-~~~~il~~ 569 (638)
T KOG1126|consen 511 HFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKA------LQLYEKAIHLDP------KNPLCKY-HRASILFS 569 (638)
T ss_pred HHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHH------HHHHHHHHhcCC------CCchhHH-HHHHHHHh
Confidence 99988877 588888888888888888888876 778888866531 1233333 36667777
Q ss_pred hccHHHHHHHhhc----hhhHHHHHHHHHHHHHhccChhHH
Q 013549 382 RGGYAEALSVQQN----RKDEGERMKRWAEAAWRNRRVSLA 418 (441)
Q Consensus 382 ~g~yaeal~~~~~----r~~eae~~~~~a~~~~~~~r~~~~ 418 (441)
.++|.||+...+. .-+|+-..+-......+-++..+|
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 7888888876432 233455555566666655554444
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.64 E-value=6.3e-14 Score=129.34 Aligned_cols=210 Identities=12% Similarity=0.155 Sum_probs=166.8
Q ss_pred cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 54 ~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
..++.+..+....+++..+. ..|+|++|+.++++++.. +|....++..+|.+|..+|++++|++.|++
T Consensus 23 ~~~~~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 90 (234)
T TIGR02521 23 RTTDRNKAAKIRVQLALGYL----EQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRR 90 (234)
T ss_pred hcccCCcHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45667778888899999984 368999999999999864 355568899999999999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES 213 (441)
Q Consensus 134 al~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~ 213 (441)
++.+.+.. ...+.+++.++..+|++++|..+++++++... .+. . .......+.++..+|++++|+.
T Consensus 91 al~~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~---~-----~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 91 ALTLNPNN----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL--YPQ---P-----ARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HHhhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--ccc---c-----hHHHHHHHHHHHHcCCHHHHHH
Confidence 98876543 23677889999999999999999998875321 110 0 1112235778889999999999
Q ss_pred HHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549 214 FFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 293 (441)
Q Consensus 214 l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q 293 (441)
+|++++...+....+...++.++..+|++++|..++++++.+. .. . ...+..++.++..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-----~------------~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTY---NQ-----T------------AESLWLGIRIARAL 216 (234)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-----C------------HHHHHHHHHHHHHH
Confidence 9999999665566677888999999999999999999999871 11 1 12345788999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 013549 294 GNFGDAEEILTRTLTK 309 (441)
Q Consensus 294 G~y~eAe~l~~rAL~i 309 (441)
|++++|..+.++...+
T Consensus 217 ~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 217 GDVAAAQRYGAQLQKL 232 (234)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 9999999988877654
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=99.62 E-value=3.5e-13 Score=145.38 Aligned_cols=248 Identities=13% Similarity=0.025 Sum_probs=179.3
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhhhhhhhhhHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE---------SGNYVEAIEKLQKVENFKNSILGVRVAA 148 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~---------qG~y~eA~e~~~ral~i~~~~lg~~~~a 148 (441)
..+.+++|+.+|++++++. |..+..+.+||.+|.. .|++++|+..+++++++.+... .+
T Consensus 273 ~~~~~~~A~~~~~~Al~ld--------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~----~a 340 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMS--------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP----QA 340 (553)
T ss_pred CHHHHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH----HH
Confidence 4567899999999999743 4446677788877653 3458999999999998876542 35
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHH
Q 013549 149 MEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSA 228 (441)
Q Consensus 149 l~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~ 228 (441)
+..++.++..+|++++|...+++++++. |.. .. +....|.++..+|++++|+..|++++...+.....
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~----P~~---~~-----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLS----PIS---AD-----IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC----CCC---HH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 6778888999999999999999997553 211 11 22345788889999999999999999966655544
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
...++.++..+|+|++|+..+++++... . +. ....+.+||.+|..+|++++|+..+.+.+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~----~----p~-----------~~~~~~~la~~l~~~G~~~eA~~~~~~~~- 468 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH----L----QD-----------NPILLSMQVMFLSLKGKHELARKLTKEIS- 468 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc----c----cc-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHhh-
Confidence 4555666778999999999999988761 0 00 11346889999999999999999987753
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHH
Q 013549 309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEA 388 (441)
Q Consensus 309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaea 388 (441)
+..|.-....+.|+.+|..+|+ +| ...+++.++..+. .+.++.. ...++-.+|+-+.+
T Consensus 469 -------~~~~~~~~~~~~l~~~~~~~g~--~a------~~~l~~ll~~~~~-~~~~~~~------~~~~~~~~g~~~~~ 526 (553)
T PRK12370 469 -------TQEITGLIAVNLLYAEYCQNSE--RA------LPTIREFLESEQR-IDNNPGL------LPLVLVAHGEAIAE 526 (553)
T ss_pred -------hccchhHHHHHHHHHHHhccHH--HH------HHHHHHHHHHhhH-hhcCchH------HHHHHHHHhhhHHH
Confidence 3466666778899999999984 43 5666665555432 2333332 45566666665555
Q ss_pred HHH
Q 013549 389 LSV 391 (441)
Q Consensus 389 l~~ 391 (441)
..+
T Consensus 527 ~~~ 529 (553)
T PRK12370 527 KMW 529 (553)
T ss_pred HHH
Confidence 554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.59 E-value=1.9e-12 Score=144.79 Aligned_cols=284 Identities=13% Similarity=0.032 Sum_probs=198.6
Q ss_pred CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
..+|.+...+.++..+.. -.|++++|+.+++++..+ .|.-+..+.++|.++..+|++.+|++.|++++
T Consensus 9 ~~~~~~~~~~~d~~~ia~----~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al 76 (765)
T PRK10049 9 LKSALSNNQIADWLQIAL----WAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKAL 76 (765)
T ss_pred hccCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677777888777753 368999999999999852 35567889999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF 215 (441)
Q Consensus 136 ~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~ 215 (441)
.+.+... ....+++.++..+|++++|..+++++++. .|.. .. ....+.++..+|++++|+..|
T Consensus 77 ~~~P~~~----~a~~~la~~l~~~g~~~eA~~~l~~~l~~----~P~~---~~------~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 77 SLEPQND----DYQRGLILTLADAGQYDEALVKAKQLVSG----APDK---AN------LLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred HhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCC---HH------HHHHHHHHHHCCCHHHHHHHH
Confidence 8876542 24567888899999999999998888644 2211 11 123577788999999999999
Q ss_pred HhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHH---------------------------------------HH
Q 013549 216 KGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIE---------------------------------------VL 256 (441)
Q Consensus 216 ~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~---------------------------------------i~ 256 (441)
++++...+....+...++.++...|..++|...+++++. .+
T Consensus 140 ~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 140 TQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 999997777777778888888888888888877763221 11
Q ss_pred HhhcccCCCCCccccccchhHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549 257 AEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 335 (441)
Q Consensus 257 ~~~~~~~~~~~lg~~~~~~~~~~~~al~-nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q 335 (441)
+.... .. +.++........+.. .++.+ ..+|++++|+..|++++.. +++-|..+..+ +|.+|..+
T Consensus 220 ~~ll~-----~~-~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~~--la~~yl~~ 285 (765)
T PRK10049 220 DALEA-----LW-HDNPDATADYQRARIDRLGAL-LARDRYKDVISEYQRLKAE-----GQIIPPWAQRW--VASAYLKL 285 (765)
T ss_pred HHHHh-----hc-ccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhcc-----CCCCCHHHHHH--HHHHHHhc
Confidence 11000 00 000000000112223 36655 5779999999999997765 44446554433 58899999
Q ss_pred hchhhhhhhHHHHHHHHHHHHHhhcCCCCCcc-hHhhhccHHHHHHHhccHHHHHHHh
Q 013549 336 AMQEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 336 G~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~-~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
|++++| +..|+++++. .+..+. ......++..++..+|+|++|+...
T Consensus 286 g~~e~A------~~~l~~~l~~----~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 286 HQPEKA------QSILTELFYH----PETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred CCcHHH------HHHHHHHhhc----CCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 999987 8899998753 122211 1123345666778899999998763
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.59 E-value=2.1e-12 Score=146.01 Aligned_cols=286 Identities=13% Similarity=0.012 Sum_probs=206.2
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCc-hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAE-SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-RVAAMEALAGLY 156 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h-~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~-~~~al~~La~l~ 156 (441)
.|++++|..+++++...........+ ...+.....+|.++..+|+|++|+..+++++...+..... ...+++.++.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 57899999999999876533221122 2256667778999999999999999999998754322111 234567788889
Q ss_pred HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----cCCc---hHH
Q 013549 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE-----EGCT---GSA 228 (441)
Q Consensus 157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-----~~~~---~~~ 228 (441)
..+|++++|..++++++.+....++.. .........+.++..+|++++|+.++++++.. .... ..+
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYH------YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 999999999999999998877654321 11222334577788999999999999999981 1111 122
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
...++.++..+|++++|..++++++++... . + +. ....++.++|.++..+|++++|...+.+++.
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~--~-------~-----~~-~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSN--Y-------Q-----PQ-QQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhc--c-------C-----ch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345688899999999999999999999531 1 1 00 1234677899999999999999999999988
Q ss_pred HHHHhh--------------------CC----------------CCc-hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549 309 KTEELF--------------------GS----------------HHP-KVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 351 (441)
Q Consensus 309 i~e~~l--------------------G~----------------~HP-~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly 351 (441)
+..+.. |. ..+ .....+.++|.++..+|++++| ..++
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A------~~~l 714 (903)
T PRK04841 641 LLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEA------EIIL 714 (903)
T ss_pred HHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHH------HHHH
Confidence 765421 00 000 0112246889999999999887 8899
Q ss_pred HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
+++++..+..+. ..+.+..+..++.++..+|++++|....
T Consensus 715 ~~al~~~~~~g~-~~~~a~~~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 715 EELNENARSLRL-MSDLNRNLILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred HHHHHHHHHhCc-hHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998765443 2345566778999999999999887754
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.58 E-value=6.8e-13 Score=148.31 Aligned_cols=279 Identities=11% Similarity=-0.037 Sum_probs=179.9
Q ss_pred HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------
Q 013549 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF------- 137 (441)
Q Consensus 65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i------- 137 (441)
...+|.++. ..|++.+|+..|++++.+. |++ ...+..++.++...|+.++|+..++++...
T Consensus 119 ~~~la~~l~----~~g~~~~Al~~l~~al~~~-----P~~---~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l 186 (765)
T PRK10049 119 LLALAYVYK----RAGRHWDELRAMTQALPRA-----PQT---QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDL 186 (765)
T ss_pred HHHHHHHHH----HCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHH
Confidence 556677762 3578888888888888743 333 344456677777777777777666632210
Q ss_pred --------------------------------hhhhhh-------hh---HHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 013549 138 --------------------------------KNSILG-------VR---VAAMEALAGLYLQLGQDDTSSVVADKCLQL 175 (441)
Q Consensus 138 --------------------------------~~~~lg-------~~---~~al~~La~l~~~~G~~~~A~~l~~~~L~i 175 (441)
.+..+. .. ..+.....+.+..+|++++|...++++++.
T Consensus 187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE 266 (765)
T ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 000000 00 000001122334667777777777665422
Q ss_pred HHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCc----hHHHHHHHHHHHHccChHHHHHHHHH
Q 013549 176 CEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCT----GSAALSYGEYLHATRNFLLAKKFYQK 251 (441)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~----~~~a~~~a~~~~~qG~y~eA~~ly~r 251 (441)
.+..+ ..+....+.+++.+|++++|+.+|++++...+.. ......++.++..+|++++|..++++
T Consensus 267 ----~~~~P-------~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 267 ----GQIIP-------PWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred ----CCCCC-------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 11001 1122234778889999999999999988743322 23445566677899999999999999
Q ss_pred HHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 013549 252 VIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 331 (441)
Q Consensus 252 AL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~l 331 (441)
+++...... ..++....+|+.........+|.++..+|++++|++++++++.. +|.-...+.++|.+
T Consensus 336 ~~~~~P~~~-----~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l 402 (765)
T PRK10049 336 TINNSPPFL-----RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASV 402 (765)
T ss_pred HhhcCCceE-----eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 887621000 01111112233333456679999999999999999999999876 35555688999999
Q ss_pred HHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 332 FRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 332 y~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
|..+|++++| +..+++++++. |+.+. ..-.++.+++..|+|++|+...
T Consensus 403 ~~~~g~~~~A------~~~l~~al~l~----Pd~~~---l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 403 LQARGWPRAA------ENELKKAEVLE----PRNIN---LEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HHhcCCHHHH------HHHHHHHHhhC----CCChH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999887 89999998874 44443 3345777888999999988765
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.55 E-value=6.3e-12 Score=142.22 Aligned_cols=277 Identities=17% Similarity=0.076 Sum_probs=199.3
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|.+.+|+.++..+ ++.+..+..+...+..+..+|++..+...++.. ..... ..........+.++..
T Consensus 354 ~g~~~~Al~~a~~a---------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l-p~~~~--~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 354 QGFPSEAIHHALAA---------GDAQLLRDILLQHGWSLFNQGELSLLEECLNAL-PWEVL--LENPRLVLLQAWLAQS 421 (903)
T ss_pred CCCHHHHHHHHHHC---------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC-CHHHH--hcCcchHHHHHHHHHH
Confidence 46666776655443 355678888889999999999999877776543 11100 0001122345666778
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--Cc---hHHHHHHH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG--CT---GSAALSYG 233 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~--~~---~~~a~~~a 233 (441)
.|+++++..+++.+.+........ ...........+.+.++..+|+|++|+.++++++...+ .. ..+...++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIE---LDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcc---cchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 899999998888876554332200 00111122234467777899999999999999987211 11 12345678
Q ss_pred HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
.++..+|++++|..++++++++..+... .+..+.+++++|.++..+|++++|+.++++++.+.++.
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~--------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDV--------------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcc--------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999998542111 11234567899999999999999999999999999998
Q ss_pred hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 314 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 314 lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
.++.+|.....+.++|.++..+|++++| +..+++++++.+..+ .......+.+++.++..+|++++|....
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A------~~~~~~al~~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~l 635 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEA------EQCARKGLEVLSNYQ--PQQQLQCLAMLAKISLARGDLDNARRYL 635 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHH------HHHHHHhHHhhhccC--chHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888887777888999999999999987 899999999986433 2233456667899999999999997654
No 25
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.54 E-value=2.6e-13 Score=136.62 Aligned_cols=296 Identities=19% Similarity=0.121 Sum_probs=219.4
Q ss_pred HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh
Q 013549 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRG-ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (441)
Q Consensus 65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a-~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg 143 (441)
...+|+-- ....-.|+|...+..|+.|+. .|.++..+. ..|..||+.|+-.++|.+|+++...-+.+.+. +|
T Consensus 17 CleLalEG-ERLck~gdcraGv~ff~aA~q-----vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~-lg 89 (639)
T KOG1130|consen 17 CLELALEG-ERLCKMGDCRAGVDFFKAALQ-----VGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL-LG 89 (639)
T ss_pred HHHHHHHH-HHHHhccchhhhHHHHHHHHH-----hcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH-hc
Confidence 44555442 222346899999999999997 556665554 56889999999999999999999888877765 45
Q ss_pred hh---HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC-------------
Q 013549 144 VR---VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN------------- 207 (441)
Q Consensus 144 ~~---~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~------------- 207 (441)
.. +.+-.||++.+.-+|.+++|...+.+-|++.+..+. .....|+...+|.+|...|+
T Consensus 90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgD------rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f 163 (639)
T KOG1130|consen 90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGD------RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAF 163 (639)
T ss_pred chhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhH------HHhhhHHHhhhhhhhhhcccccCCCChhhcccc
Confidence 53 346678999999999999999999999999877763 34556666677888887665
Q ss_pred -------HHHHHHHHHhhhh------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549 208 -------LESAESFFKGLQE------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274 (441)
Q Consensus 208 -------y~eAe~l~~~aL~------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~ 274 (441)
++.|.++|+.-|. .....+.+.-++|+.|+..|+|++|+..++.=|.|.++ |++...
T Consensus 164 ~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---fGDrAa------- 233 (639)
T KOG1130|consen 164 NAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---FGDRAA------- 233 (639)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH---hhhHHH-------
Confidence 3446666666555 11122344457888999999999999999999999543 212110
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHH
Q 013549 275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA 354 (441)
Q Consensus 275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rA 354 (441)
.-.+..|||+.|.-.|+|+.|.++|+++|.+..++ |.. ..-+-+...||..|.-...+++| ..+++|=
T Consensus 234 ----eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r-~vEAQscYSLgNtytll~e~~kA------I~Yh~rH 301 (639)
T KOG1130|consen 234 ----ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNR-TVEAQSCYSLGNTYTLLKEVQKA------ITYHQRH 301 (639)
T ss_pred ----HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cch-hHHHHHHHHhhhHHHHHHHHHHH------HHHHHHH
Confidence 12367899999999999999999999999998774 433 23456677899999988888776 8999999
Q ss_pred HHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchh
Q 013549 355 LEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK 396 (441)
Q Consensus 355 L~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~ 396 (441)
|+|-.... |--.-+.....++..+-+-|...+|+..-+.-.
T Consensus 302 LaIAqeL~-DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 302 LAIAQELE-DRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHH-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99976533 222234566677888888899999888754433
No 26
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.53 E-value=4.7e-13 Score=134.72 Aligned_cols=272 Identities=19% Similarity=0.165 Sum_probs=197.0
Q ss_pred CCCchHHHHHHHH-HHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 55 GLNSNPVVLQMIN-YALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 55 g~~h~~~a~~m~n-~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
|++--.+...+-. ++..| | ..++|.+|+.+...-|......+ +...-|.+..|||+++.-.|.|+||+-+.+|
T Consensus 47 GTeDl~tLSAIYsQLGNAy--f--yL~DY~kAl~yH~hDltlar~lg--dklGEAKssgNLGNtlKv~G~fdeA~~cc~r 120 (639)
T KOG1130|consen 47 GTEDLSTLSAIYSQLGNAY--F--YLKDYEKALKYHTHDLTLARLLG--DKLGEAKSSGNLGNTLKVKGAFDEALTCCFR 120 (639)
T ss_pred cchHHHHHHHHHHHhcchh--h--hHhhHHHHHhhhhhhHHHHHHhc--chhccccccccccchhhhhcccchHHHHHHH
Confidence 6665555544433 66665 3 35789999999888877655443 5567788999999999999999999999999
Q ss_pred HHHhhhhhhhhhH---HHHHHHHHHHHhcCCc--------------------chhHHHHHHHHHHHHhcCCCcchhhhhh
Q 013549 134 VENFKNSILGVRV---AAMEALAGLYLQLGQD--------------------DTSSVVADKCLQLCEKHKPENYKTYGAV 190 (441)
Q Consensus 134 al~i~~~~lg~~~---~al~~La~l~~~~G~~--------------------~~A~~l~~~~L~i~~~~~~~~~~~~~~l 190 (441)
-|++.++ +|+++ .+++||+++|-..|+. ..|..+|..-|++.++.+. ...
T Consensus 121 hLd~are-LgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD------r~a 193 (639)
T KOG1130|consen 121 HLDFARE-LGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD------RLA 193 (639)
T ss_pred HhHHHHH-HhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh------HHh
Confidence 9999988 78875 4899999999877753 2233444444444444331 111
Q ss_pred HhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----ccC-CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCC
Q 013549 191 NSRANAVKGLVELAHGNLESAESFFKGLQE-----EEG-CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD 264 (441)
Q Consensus 191 ~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----~~~-~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~ 264 (441)
..|+...+|..|+-.|+|++|+.+.+.-|. +.. ..-.+..|+|+.+.-.|+|+.|.++|++++.+..+.+.
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~--- 270 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN--- 270 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---
Confidence 223333346666779999999999988777 111 11234467888999999999999999999988654332
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549 265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 344 (441)
Q Consensus 265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~ 344 (441)
..+...+-+.||++|.-..+|.+|++++.|=|.|..+.- +-..-+.++..||..|...|..++| +
T Consensus 271 -----------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~RacwSLgna~~alg~h~kA--l 335 (639)
T KOG1130|consen 271 -----------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACWSLGNAFNALGEHRKA--L 335 (639)
T ss_pred -----------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhhhhHHHH--H
Confidence 223456678999999999999999999999999998762 1223467888999999999999998 3
Q ss_pred HHHHHHHHHHHHH
Q 013549 345 LIQEGLYRRALEF 357 (441)
Q Consensus 345 ~~Ae~ly~rAL~i 357 (441)
..||...+-++++
T Consensus 336 ~fae~hl~~s~ev 348 (639)
T KOG1130|consen 336 YFAELHLRSSLEV 348 (639)
T ss_pred HHHHHHHHHHHHh
Confidence 3455555544444
No 27
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.52 E-value=6.1e-14 Score=111.37 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
++.+++++|.+|..+|+|++|+++|++|+++ .+.+|++||.++.+++|||.+|..+|++++| +.+|++|++|+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A------~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEA------LEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhh
Confidence 4557899999999999999999999999999 8899999999999999999999999999987 99999999998
Q ss_pred h
Q 013549 359 K 359 (441)
Q Consensus 359 ~ 359 (441)
+
T Consensus 77 ~ 77 (78)
T PF13424_consen 77 E 77 (78)
T ss_dssp H
T ss_pred c
Confidence 6
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=5.3e-12 Score=125.82 Aligned_cols=227 Identities=16% Similarity=0.122 Sum_probs=163.8
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~ 159 (441)
+....++.-+.|+|.... -+.+..+..+.++|.+|...|++++|+..|++++.+.+.. ..++++++.++..+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~ 111 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQA 111 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHC
Confidence 456788888889886431 2345668999999999999999999999999999887653 34789999999999
Q ss_pred CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT 239 (441)
Q Consensus 160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q 239 (441)
|++++|...+++++++. |.. ..+....|.++..+|+|++|...|++++...+..+... .+..+....
T Consensus 112 g~~~~A~~~~~~Al~l~----P~~--------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~ 178 (296)
T PRK11189 112 GNFDAAYEAFDSVLELD----PTY--------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESK 178 (296)
T ss_pred CCHHHHHHHHHHHHHhC----CCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHcc
Confidence 99999999999997543 111 11223468888899999999999999999655444211 122345567
Q ss_pred cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549 240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 319 (441)
Q Consensus 240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP 319 (441)
+++++|...+++++... . ++. ...+.++..+|+++++ ..++++++-.++.. .-.|
T Consensus 179 ~~~~~A~~~l~~~~~~~----~---~~~----------------~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~ 233 (296)
T PRK11189 179 LDPKQAKENLKQRYEKL----D---KEQ----------------WGWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAE 233 (296)
T ss_pred CCHHHHHHHHHHHHhhC----C---ccc----------------cHHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHH
Confidence 89999999998876441 1 111 1235566667888765 34455543321110 0024
Q ss_pred hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 320 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 320 ~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
....++.+||.+|..+|++++| ...|++|+++-
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A------~~~~~~Al~~~ 266 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEA------AALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhC
Confidence 4567899999999999999987 89999998763
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.7e-13 Score=143.22 Aligned_cols=238 Identities=16% Similarity=0.123 Sum_probs=177.5
Q ss_pred CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCC--------------------------CCchhHHH
Q 013549 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ--------------------------LAESWRGI 109 (441)
Q Consensus 56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g--------------------------~~h~~~a~ 109 (441)
..|+.+--.+.++|..| | ..+.|++|+.+|+.+-.+..-.+. +..|.--.
T Consensus 347 ~h~~nt~wvl~q~Gray--F--El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPe 422 (638)
T KOG1126|consen 347 SHHYNTGWVLSQLGRAY--F--ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPE 422 (638)
T ss_pred HhcCCchHHHHHHHHHH--H--HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcH
Confidence 35667777778888888 5 378999999999988766544331 12233334
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
+...+|++|.-|++++.|++.|+||+.+.+.- +.++--++-=+....+++.|...|+++|.+. +.||
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQldp~f----aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~----~rhY----- 489 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF----AYAYTLLGHESIATEEFDKAMKSFRKALGVD----PRHY----- 489 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccCCcc----chhhhhcCChhhhhHHHHhHHHHHHhhhcCC----chhh-----
Confidence 56778899999999999999999998877632 1111111212333345666666666665332 2222
Q ss_pred hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcc
Q 013549 190 VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 269 (441)
Q Consensus 190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg 269 (441)
++..-.|++|+.|++|+.|+-+|++|+...+........+|.+++..|+.++|..+|++|+.+ ... +.
T Consensus 490 ---nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~k----n~-- 557 (638)
T KOG1126|consen 490 ---NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPK----NP-- 557 (638)
T ss_pred ---HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCC----Cc--
Confidence 344457999999999999999999999987777667778899999999999999999999988 111 11
Q ss_pred ccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 270 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 270 ~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
.+...-|.++...++|+||...+++--++. |+=+.++.-||.+|.+.|+.+.|
T Consensus 558 -----------l~~~~~~~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 558 -----------LCKYHRASILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred -----------hhHHHHHHHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHccchHH
Confidence 246789999999999999999998866553 78889999999999999998876
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=4.9e-12 Score=136.54 Aligned_cols=210 Identities=12% Similarity=0.044 Sum_probs=160.1
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..+++++|+..+++++++. |+ -+.++..+|.++..+|+|++|+..|++++.+.+... .++..++.++.
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-----P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~ 383 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-----HN---NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA----DIKYYYGWNLF 383 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-----CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Confidence 3467999999999999753 44 456788999999999999999999999999887642 36788899999
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCchHHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE-EGCTGSAALSYGEYL 236 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-~~~~~~~a~~~a~~~ 236 (441)
.+|++++|..++++++++. |... .. ....+.+++.+|+|++|+..+++++.. .+..+....++|.+|
T Consensus 384 ~~G~~~eAi~~~~~Al~l~----P~~~---~~-----~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 384 MAGQLEEALQTINECLKLD----PTRA---AA-----GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HCCCHHHHHHHHHHHHhcC----CCCh---hh-----HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 9999999999999987553 2110 01 112233456799999999999999984 345566667889999
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
..+|++++|+..+++.+... |+ .....+.|+.+|..+| ++|...+++.++... -++
T Consensus 452 ~~~G~~~eA~~~~~~~~~~~------------------~~--~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~--~~~ 507 (553)
T PRK12370 452 SLKGKHELARKLTKEISTQE------------------IT--GLIAVNLLYAEYCQNS--ERALPTIREFLESEQ--RID 507 (553)
T ss_pred HhCCCHHHHHHHHHHhhhcc------------------ch--hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh--Hhh
Confidence 99999999999998865441 11 1345788999999999 488888888666555 344
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhh
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
.+|.. ++.+|.-+|+-+.+
T Consensus 508 ~~~~~------~~~~~~~~g~~~~~ 526 (553)
T PRK12370 508 NNPGL------LPLVLVAHGEAIAE 526 (553)
T ss_pred cCchH------HHHHHHHHhhhHHH
Confidence 45554 78899999987664
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.46 E-value=1.8e-11 Score=133.69 Aligned_cols=333 Identities=17% Similarity=0.149 Sum_probs=203.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 54 ~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
...++|+.+..++-=|... + .-++|..|+.+|.++|.|.+.. +.. ....+|..++..|+-+.|+--++|
T Consensus 156 Vl~~sp~Nil~LlGkA~i~--y--nkkdY~~al~yyk~al~inp~~--~aD-----~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 156 VLKQSPDNILALLGKARIA--Y--NKKDYRGALKYYKKALRINPAC--KAD-----VRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHhhCCcchHHHHHHHHHH--h--ccccHHHHHHHHHHHHhcCccc--CCC-----ccchhhhHHHhccchhhHHHHHHH
Confidence 4677888888888877775 2 3478999999999999887543 222 345677889999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES 213 (441)
Q Consensus 134 al~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~ 213 (441)
++.+.+..+ .++-.|+.+... .+.. .-+++.+.++.+...+...+.. +.+++...+...|+|..+..
T Consensus 225 alqLdp~~v----~alv~L~~~~l~-~~d~---~s~~~~~~ll~~ay~~n~~nP~-----~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 225 ALQLDPTCV----SALVALGEVDLN-FNDS---DSYKKGVQLLQRAYKENNENPV-----ALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred HHhcChhhH----HHHHHHHHHHHH-ccch---HHHHHHHHHHHHHHhhcCCCcH-----HHHHHHHHHhhcccHHHHHH
Confidence 998887543 233334443322 1111 2234455444444322222112 22233444557778888777
Q ss_pred HHHhhhh-ccCCc--hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549 214 FFKGLQE-EEGCT--GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 290 (441)
Q Consensus 214 l~~~aL~-~~~~~--~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly 290 (441)
+...++. +...+ ....+.+|..||.||+|++|..+|.+++.. ... +.. -++..||+.|
T Consensus 292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d---~~~-------------l~~~GlgQm~ 352 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DND---NFV-------------LPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCC---Ccc-------------ccccchhHHH
Confidence 7777777 21111 223345577777888888888888777766 111 111 1246777777
Q ss_pred HHcCCHHHHHHHHHHHHHHHH------HhhCCCC------------------------chHHHHHHHHHHHHHHhhchhh
Q 013549 291 AHMGNFGDAEEILTRTLTKTE------ELFGSHH------------------------PKVGVVLTCLALMFRNKAMQEH 340 (441)
Q Consensus 291 ~~qG~y~eAe~l~~rAL~i~e------~~lG~~H------------------------P~va~~l~nLa~ly~~qG~~ee 340 (441)
..+|++.+|...|++.+.... +++|.-| |.-....-+||.+|..+.-+
T Consensus 353 i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-- 430 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-- 430 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH--
Confidence 777777777777777776542 1222222 22222344455555443322
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchhhHH-------H-------HHHHHH
Q 013549 341 SSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEG-------E-------RMKRWA 406 (441)
Q Consensus 341 A~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~~ea-------e-------~~~~~a 406 (441)
.+...|.+|++|+...+-.-| ...+||+|..+...|.+.+|+.-+....+.+ | .-++.|
T Consensus 431 -----~sL~~~~~A~d~L~~~~~~ip--~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 431 -----ASLDAYGNALDILESKGKQIP--PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred -----HHHHHHHHHHHHHHHcCCCCC--HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 236788999988854332223 3688999999998899888887664333331 1 234566
Q ss_pred HHHHhccChhHHHHhcccCCCCCCceeeeccc
Q 013549 407 EAAWRNRRVSLAEALNFSEPSNKPLVIDARTS 438 (441)
Q Consensus 407 ~~~~~~~r~~~~~~l~~~~~~~~~~~~~~r~~ 438 (441)
.-.-...+.++|+....+=..-+|.-||+|+|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylR 535 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLR 535 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHH
Confidence 66666667777777776555556677888776
No 32
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=1.4e-12 Score=123.22 Aligned_cols=158 Identities=19% Similarity=0.170 Sum_probs=132.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
+|+-|+.+|++..|...+++||...+....+...+|.+|+.+|..+.|.+.|++||.+. .+ . |
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~-----~-G-------- 103 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PN-----N-G-------- 103 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CC-----c-c--------
Confidence 58889999999999999999999888888888999999999999999999999999982 11 1 1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
..+||.|.-++.||+|++|...|++|+. -|.-|....++.|+|..-.++|+.+.| +..|+|+|++
T Consensus 104 ---dVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A------~~~l~raL~~ 168 (250)
T COG3063 104 ---DVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQA------EEYLKRALEL 168 (250)
T ss_pred ---chhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhH------HHHHHHHHHh
Confidence 3579999999999999999999999986 577888999999999999999999887 9999999998
Q ss_pred hhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 358 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 358 ~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
.- +-|.+... ++-.....|+|.+|-...+.
T Consensus 169 dp----~~~~~~l~---~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 169 DP----QFPPALLE---LARLHYKAGDYAPARLYLER 198 (250)
T ss_pred Cc----CCChHHHH---HHHHHHhcccchHHHHHHHH
Confidence 52 33332222 33455677899999776543
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=6.2e-13 Score=130.69 Aligned_cols=257 Identities=21% Similarity=0.188 Sum_probs=101.2
Q ss_pred HHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhH
Q 013549 67 NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV 146 (441)
Q Consensus 67 n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~ 146 (441)
.+|.++++ .|++++|+.++.+..... ..|+-...+..+|.+.+..|++++|+..|++.+.+.+...
T Consensus 13 ~~A~~~~~----~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~---- 78 (280)
T PF13429_consen 13 RLARLLYQ----RGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP---- 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccc----cccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc----
Confidence 56888754 589999999997766422 0122235566789999999999999999999987655432
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc--CC
Q 013549 147 AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE--GC 224 (441)
Q Consensus 147 ~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~--~~ 224 (441)
..+.+++.+ ...+++.+|..++.+..+ +... ...+. ...-++...|++++++.+++++.... +.
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~---~~~~-----~~~l~-----~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYE---RDGD-----PRYLL-----SALQLYYRLGDYDEAEELLEKLEELPAAPD 144 (280)
T ss_dssp -----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred ccccccccc-cccccccccccccccccc---cccc-----cchhh-----HHHHHHHHHhHHHHHHHHHHHHHhccCCCC
Confidence 245667777 577888888777665532 1111 01111 11223468999999999999977622 33
Q ss_pred chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549 225 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 225 ~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~ 304 (441)
.......+|.++..+|++++|+..|++||+.. |+. ....+.|+.++..+|+++++.+.++
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------------------P~~--~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELD------------------PDD--PDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------------------TT---HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCC--HHHHHHHHHHHHHCCChHHHHHHHH
Confidence 34455678999999999999999999999982 111 2346789999999999999877777
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhcc
Q 013549 305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 384 (441)
Q Consensus 305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~ 384 (441)
+..... +..|.+ +..+|.+|...|++++| ...|+++++.. |++|. .+.+++.++...|+
T Consensus 205 ~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~A------l~~~~~~~~~~----p~d~~---~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 205 RLLKAA-----PDDPDL---WDALAAAYLQLGRYEEA------LEYLEKALKLN----PDDPL---WLLAYADALEQAGR 263 (280)
T ss_dssp HHHHH------HTSCCH---CHHHHHHHHHHT-HHHH------HHHHHHHHHHS----TT-HH---HHHHHHHHHT----
T ss_pred HHHHHC-----cCHHHH---HHHHHHHhccccccccc------ccccccccccc----ccccc---cccccccccccccc
Confidence 665554 566664 55678999999999987 88999987653 34443 44567778878888
Q ss_pred HHHHHHHh
Q 013549 385 YAEALSVQ 392 (441)
Q Consensus 385 yaeal~~~ 392 (441)
+++|..+.
T Consensus 264 ~~~A~~~~ 271 (280)
T PF13429_consen 264 KDEALRLR 271 (280)
T ss_dssp --------
T ss_pred cccccccc
Confidence 88777664
No 34
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.44 E-value=3.4e-13 Score=107.07 Aligned_cols=77 Identities=18% Similarity=0.124 Sum_probs=71.0
Q ss_pred chHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 013549 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (441)
Q Consensus 58 h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i 137 (441)
||+++..+.|+|..|. .+|+|++|+.+|++++.+ .+..|++||.++.++++||.+|..+|+|++|++++++++++
T Consensus 1 H~~~a~~~~~la~~~~----~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 1 HPDTANAYNNLARVYR----ELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHH----HTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999994 378999999999999999 77789999999999999999999999999999999999988
Q ss_pred hh
Q 013549 138 KN 139 (441)
Q Consensus 138 ~~ 139 (441)
.+
T Consensus 76 ~~ 77 (78)
T PF13424_consen 76 FE 77 (78)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 35
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.42 E-value=2.6e-10 Score=114.88 Aligned_cols=309 Identities=11% Similarity=-0.008 Sum_probs=189.6
Q ss_pred hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~ 138 (441)
|+-+.....+|..+. ..|++.+|...+.++....... ++........+.++..+|++++|++.+++++...
T Consensus 3 p~~~~a~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 3 PDFALGHAAAALLLL----LGGERPAAAAKAAAAAQALAAR-----ATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred CccHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 555666777777762 3577889888998888766433 2344456678889999999999999999998876
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218 (441)
Q Consensus 139 ~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a 218 (441)
+... .++.. +..+..+|.+..+...+.+++.. ..+.++ .......+.+.++..+|+|++|+..|+++
T Consensus 74 P~~~----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~-----~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 74 PRDL----LALKL-HLGAFGLGDFSGMRDHVARVLPL---WAPENP-----DYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred CCcH----HHHHH-hHHHHHhcccccCchhHHHHHhc---cCcCCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5432 12222 22334445544444444444433 111111 11223345677888999999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549 219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 298 (441)
Q Consensus 219 L~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e 298 (441)
+...+....+...++.++..+|++++|+.++++++... .. ++. ........+|.+|..+|++++
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~---~~---~~~----------~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW---DC---SSM----------LRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc---CC---Ccc----------hhHHHHHHHHHHHHHCCCHHH
Confidence 99666666777889999999999999999999999873 11 000 122345689999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCchHHHHHH--HHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHH
Q 013549 299 AEEILTRTLTKTEELFGSHHPKVGVVLT--CLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTD 376 (441)
Q Consensus 299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~--nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~ 376 (441)
|+.+|++++... +..+.....++ .+...+..+|..+.+ .-.+..........+++......+ +.+
T Consensus 205 A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~-------~~w~~~~~~~~~~~~~~~~~~~~~-~~a 271 (355)
T cd05804 205 ALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVG-------DRWEDLADYAAWHFPDHGLAFNDL-HAA 271 (355)
T ss_pred HHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChH-------HHHHHHHHHHHhhcCcccchHHHH-HHH
Confidence 999999994421 22233332212 223333444432221 111222222211112232223333 477
Q ss_pred HHHHHhccHHHHHHHhhchhhHHH-------------HHHHHHHHHHhccChhHH
Q 013549 377 IVALARGGYAEALSVQQNRKDEGE-------------RMKRWAEAAWRNRRVSLA 418 (441)
Q Consensus 377 ~~~~~~g~yaeal~~~~~r~~eae-------------~~~~~a~~~~~~~r~~~~ 418 (441)
.++..+|+.++|...-..-...++ ...-.|...|+.+.+..+
T Consensus 272 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 272 LALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 778889999888775422222222 222367777777765444
No 36
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=2.2e-11 Score=121.48 Aligned_cols=226 Identities=13% Similarity=0.014 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~ 138 (441)
+..+....+.|..+. ..|++++|+..|++++.+. |....+++++|.+|..+|+|++|++.|++++.+.
T Consensus 61 ~~~a~~~~~~g~~~~----~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 61 EERAQLHYERGVLYD----SLGLRALARNDFSQALALR--------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred HhhHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344666778888873 4689999999999999853 4446789999999999999999999999999887
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218 (441)
Q Consensus 139 ~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a 218 (441)
+... .++.+++.++..+|++++|...+++++.+. |..+ .+ .+........+++++|...|+++
T Consensus 129 P~~~----~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----P~~~-------~~--~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 129 PTYN----YAYLNRGIALYYGGRYELAQDDLLAFYQDD----PNDP-------YR--ALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred CCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCH-------HH--HHHHHHHHccCCHHHHHHHHHHH
Confidence 6642 367889999999999999999999887432 2111 01 11111223578999999999887
Q ss_pred hhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549 219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 298 (441)
Q Consensus 219 L~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e 298 (441)
+...+.. .. .++.++...|++.++. .++.+++.. .. ...++ |. ...++.+||.+|..+|++++
T Consensus 192 ~~~~~~~-~~--~~~~~~~~lg~~~~~~-~~~~~~~~~---~~---~~~l~-----~~--~~ea~~~Lg~~~~~~g~~~~ 254 (296)
T PRK11189 192 YEKLDKE-QW--GWNIVEFYLGKISEET-LMERLKAGA---TD---NTELA-----ER--LCETYFYLAKYYLSLGDLDE 254 (296)
T ss_pred HhhCCcc-cc--HHHHHHHHccCCCHHH-HHHHHHhcC---CC---cHHHH-----HH--HHHHHHHHHHHHHHCCCHHH
Confidence 7532111 11 1344555678887763 555555431 10 11111 11 23468999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH
Q 013549 299 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN 334 (441)
Q Consensus 299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~ 334 (441)
|+.+|++|+++. -++.+.....+..|..+...
T Consensus 255 A~~~~~~Al~~~----~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 255 AAALFKLALANN----VYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHhC----CchHHHHHHHHHHHHHHHhh
Confidence 999999999653 23556666666666666443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=2.1e-12 Score=126.94 Aligned_cols=223 Identities=18% Similarity=0.176 Sum_probs=100.7
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
+.+++++|+..|++.+.+. + .....+.+++.+ ...|+|.+|+++++++..-... ...+...+.++.
T Consensus 56 ~~~~~~~A~~ay~~l~~~~-----~---~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-----~~~l~~~l~~~~ 121 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASD-----K---ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-----PRYLLSALQLYY 121 (280)
T ss_dssp ----------------------------------------------------------------------------H-HH
T ss_pred ccccccccccccccccccc-----c---cccccccccccc-cccccccccccccccccccccc-----cchhhHHHHHHH
Confidence 5688999999999998643 2 244457778887 7999999999999887543322 124455667788
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH 237 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~ 237 (441)
..|+++++..+++++..... .+ .+ .......+.++..+|++++|+.+|++++...|....+...++.++.
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~--~~---~~-----~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPA--AP---DS-----ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI 191 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T--------T------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHhccC--CC---CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 88999888877776542110 11 00 1122245677789999999999999999987777788888999999
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
.+|++++|.++.++..... .. .+. ....+|.+|..+|++++|.++|++++. .
T Consensus 192 ~~~~~~~~~~~l~~~~~~~---~~---~~~--------------~~~~la~~~~~lg~~~~Al~~~~~~~~--------~ 243 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA---PD---DPD--------------LWDALAAAYLQLGRYEEALEYLEKALK--------L 243 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH----HT---SCC--------------HCHHHHHHHHHHT-HHHHHHHHHHHHH--------H
T ss_pred HCCChHHHHHHHHHHHHHC---cC---HHH--------------HHHHHHHHhcccccccccccccccccc--------c
Confidence 9999999888888876652 11 111 236899999999999999999999884 3
Q ss_pred CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+|.=..++.++|.++...|++++| ..++++++.-+
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A------~~~~~~~~~~l 278 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEA------LRLRRQALRLL 278 (280)
T ss_dssp STT-HHHHHHHHHHHT-------------------------
T ss_pred cccccccccccccccccccccccc------ccccccccccc
Confidence 455556677888999999999987 88999988754
No 38
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.40 E-value=1.2e-11 Score=116.82 Aligned_cols=164 Identities=20% Similarity=0.220 Sum_probs=132.1
Q ss_pred CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (441)
Q Consensus 102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~ 181 (441)
.++...+.+...||.-|..+|++..|...+++||.+.++.-
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--------------------------------------- 69 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--------------------------------------- 69 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---------------------------------------
Confidence 46677889999999999999999999999999877766531
Q ss_pred CcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 182 ENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 182 ~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
.+......+|..+|+.+-|.+.|++|+...+..+++.+|||.+++.||+|++|...|++|++-
T Consensus 70 -----------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------ 132 (250)
T COG3063 70 -----------LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------ 132 (250)
T ss_pred -----------HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------
Confidence 111234666778999999999999999988888899999999999999999999999999875
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
|..+ + ...++-|+|.+-..+|+++.|+++|+|+|.+- |....++-.++......|+|-.|
T Consensus 133 ----P~Y~------~--~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--------p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 133 ----PAYG------E--PSDTLENLGLCALKAGQFDQAEEYLKRALELD--------PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred ----CCCC------C--cchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--------cCCChHHHHHHHHHHhcccchHH
Confidence 1223 0 12467899999999999999999999999853 44445556667888888988776
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.5e-10 Score=126.63 Aligned_cols=254 Identities=15% Similarity=0.187 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
..+..++-|+..--.+..+ ..|+.|+.++.++..+. +++|. +++.|++-|+..|+|..+..+.+.++....
T Consensus 231 ~~v~alv~L~~~~l~~~d~-~s~~~~~~ll~~ay~~n-----~~nP~---~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 231 TCVSALVALGEVDLNFNDS-DSYKKGVQLLQRAYKEN-----NENPV---ALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred hhHHHHHHHHHHHHHccch-HHHHHHHHHHHHHHhhc-----CCCcH---HHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 4455555554444334333 35666777776666654 34444 455666666666666666666666655442
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 013549 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQ 219 (441)
Q Consensus 140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL 219 (441)
.. .+...+.+.++..|-.+|++++|-.+|..++......+ .+ ...-+|-.|+.+|++++|+.+|++++
T Consensus 302 ~~-~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~--------~l---~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 302 NK-SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF--------VL---PLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred hh-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc--------cc---cccchhHHHHHhchHHHHHHHHHHHH
Confidence 21 12233556666666666666666666666653322211 00 00013445556666666666666665
Q ss_pred h--------------------------------------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 220 E--------------------------------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 220 ~--------------------------------------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
. ..+....+.+.++.++ .+++.-.+...|.+|++|.+....
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~-e~~d~~~sL~~~~~A~d~L~~~~~ 448 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL-EQTDPWASLDAYGNALDILESKGK 448 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHcCC
Confidence 5 2222223444455444 345555569999999999765433
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC-chH-HHHHHHHHHHHHHhhchh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH-PKV-GVVLTCLALMFRNKAMQE 339 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H-P~v-a~~l~nLa~ly~~qG~~e 339 (441)
.+. | -.+||+|.+++..|.|.+|..+|.+|+.+.....-++- -+| .+...|||.++...++++
T Consensus 449 -----~ip-----~-----E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 449 -----QIP-----P-----EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred -----CCC-----H-----HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 222 2 24799999999999999999999999999665544333 233 456899999999999998
Q ss_pred hhhhhHHHHHHHHHHHH
Q 013549 340 HSSALLIQEGLYRRALE 356 (441)
Q Consensus 340 eA~~~~~Ae~ly~rAL~ 356 (441)
.| +.+|...+.
T Consensus 514 ~A------~e~Yk~Ilk 524 (1018)
T KOG2002|consen 514 VA------EEMYKSILK 524 (1018)
T ss_pred HH------HHHHHHHHH
Confidence 87 889987644
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.8e-11 Score=126.14 Aligned_cols=212 Identities=17% Similarity=0.223 Sum_probs=169.3
Q ss_pred CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC-
Q 013549 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK- 180 (441)
Q Consensus 102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~- 180 (441)
..+|+.+.+...+|..|...|++.+|...|-++..+.+. .|. +|-..+..+-..|+.++|..-|.++-+++...+
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgp---aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl 381 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGP---AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL 381 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccH---HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc
Confidence 568888999999999999999999999999999777655 443 666777777778888888888887776665544
Q ss_pred CCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549 181 PENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK 260 (441)
Q Consensus 181 ~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~ 260 (441)
| .+ ..|+=|...++++-|+.+|.+|++..|..+-+..-+|-+....+.|.+|..+|+.+|+......
T Consensus 382 P-------~L------Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 382 P-------SL------YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred h-------HH------HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence 2 11 2577777799999999999999997777777777788888899999999999999996643222
Q ss_pred ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhh
Q 013549 261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 340 (441)
Q Consensus 261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ee 340 (441)
. ... - .-...+|||.+|+.+++|++|+..|++||.. -|.-+.++..+|.+|..+|+.+.
T Consensus 449 ~----e~~---~------w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 449 N----EKI---F------WEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred c----ccc---c------hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHH
Confidence 1 110 0 1124689999999999999999999999975 36677888899999999999988
Q ss_pred hhhhHHHHHHHHHHHHH
Q 013549 341 SSALLIQEGLYRRALEF 357 (441)
Q Consensus 341 A~~~~~Ae~ly~rAL~i 357 (441)
| ...|.+||.|
T Consensus 508 A------id~fhKaL~l 518 (611)
T KOG1173|consen 508 A------IDHFHKALAL 518 (611)
T ss_pred H------HHHHHHHHhc
Confidence 7 7888888776
No 41
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.32 E-value=2.2e-09 Score=123.16 Aligned_cols=234 Identities=14% Similarity=0.046 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG 188 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~ 188 (441)
.+++.|-..|.+.|++++|+++|.+..... +.++..+++.|...|.+.|+.++|..++++....- .+..+
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~G---v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~gi~P---- 577 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKN---VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET---HPIDP---- 577 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CCCCC----
Confidence 455555566666666666666665543221 12233455666666666666666665555443210 00000
Q ss_pred hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549 189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEE-EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 267 (441)
Q Consensus 189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~ 267 (441)
+.. ... ..-.+|...|++++|+.+|++.... -.....+...+...|...|++++|..+|++..+. +
T Consensus 578 D~v-Tyn-aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G------ 644 (1060)
T PLN03218 578 DHI-TVG-ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G------ 644 (1060)
T ss_pred cHH-HHH-HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C------
Confidence 000 011 1223456788888888888887772 2333344455666677788888888888775432 1
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 013549 268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 347 (441)
Q Consensus 268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~A 347 (441)
+- |+ ..+++.|-..|...|++++|.+++.+..+. ..+....+++.|...|.++|++++|
T Consensus 645 v~-----PD---~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~eeA------ 703 (1060)
T PLN03218 645 VK-----PD---EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWKKA------ 703 (1060)
T ss_pred CC-----CC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHH------
Confidence 01 22 234666777777777777777777765531 1222234677777777777777765
Q ss_pred HHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 348 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 348 e~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
+.+|++..+. + -.|++ .+.+.+-..|...|++++|+.+.
T Consensus 704 ~~lf~eM~~~----g-~~Pdv-vtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 704 LELYEDIKSI----K-LRPTV-STMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHHHc----C-CCCCH-HHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566554321 1 12332 24455555566667777776654
No 42
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.29 E-value=1.4e-09 Score=124.94 Aligned_cols=258 Identities=10% Similarity=0.013 Sum_probs=178.4
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|++++|+.+|++..... . .|+ ..+++.|-..|.+.|++++|.++|++....... +.++..+++.|...|..
T Consensus 520 ~G~~eeAl~lf~~M~~~G---v---~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKN---V---KPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACAN 591 (1060)
T ss_pred CcCHHHHHHHHHHHHHcC---C---CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHH
Confidence 478899999998887532 2 233 467999999999999999999999988653211 22344588889999999
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCchHHHHHHHHHHH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE-EGCTGSAALSYGEYLH 237 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-~~~~~~~a~~~a~~~~ 237 (441)
.|+.++|..+++...+ ..... .. ...+.....|...|++++|..+|.+.... ......+...+...|.
T Consensus 592 ~G~ldeA~elf~~M~e---~gi~p------~~--~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHE---YNIKG------TP--EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred CCCHHHHHHHHHHHHH---cCCCC------Ch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999998887642 11110 11 11122334466899999999999998873 2223344556677888
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
..|++++|..++++.++. + +. | ...+++.|...|...|++++|+++|++.... | -
T Consensus 661 k~G~~eeA~~l~~eM~k~-----G------~~-----p---d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g-~ 715 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQ-----G------IK-----L---GTVSYSSLMGACSNAKNWKKALELYEDIKSI-----K-L 715 (1060)
T ss_pred hCCCHHHHHHHHHHHHHc-----C------CC-----C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-C
Confidence 999999999999987643 1 11 1 1346788999999999999999998875432 3 2
Q ss_pred CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549 318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
.|++ .+++.|-..|.+.|++++| ..++++..+. + -.|+.. +++.+-..+...|++++|..++.
T Consensus 716 ~Pdv-vtyN~LI~gy~k~G~~eeA------lelf~eM~~~----G-i~Pd~~-Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 716 RPTV-STMNALITALCEGNQLPKA------LEVLSEMKRL----G-LCPNTI-TYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred CCCH-HHHHHHHHHHHHCCCHHHH------HHHHHHHHHc----C-CCCCHH-HHHHHHHHHHHCCCHHHHHHHHH
Confidence 3554 5689999999999998887 6777665322 1 123322 34444456677788888877653
No 43
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.27 E-value=4.8e-10 Score=124.12 Aligned_cols=253 Identities=11% Similarity=-0.000 Sum_probs=131.0
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~ 159 (441)
|++++|..+|++... + ...+++.|...|...|++++|+++|++..... +.++..+++.+...|...
T Consensus 273 g~~~~A~~vf~~m~~----------~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 273 GDIEDARCVFDGMPE----------K-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---VSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred CCHHHHHHHHHhCCC----------C-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc
Confidence 567777777765431 1 23467777777777777777777777653321 222334556666666666
Q ss_pred CCcchhHHHHHHHHHHHHhcCCCc---c-------------hhh---------hhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 160 GQDDTSSVVADKCLQLCEKHKPEN---Y-------------KTY---------GAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 160 G~~~~A~~l~~~~L~i~~~~~~~~---~-------------~~~---------~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
|+.+++..++...++. ..+.. + +++ .++. ..+.....|...|++++|..+
T Consensus 339 g~~~~a~~i~~~m~~~---g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~--t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 339 ALLEHAKQAHAGLIRT---GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI--SWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred cchHHHHHHHHHHHHh---CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee--eHHHHHHHHHHcCCHHHHHHH
Confidence 6666666555444311 10000 0 000 0000 001122233455555555555
Q ss_pred HHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549 215 FKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 293 (441)
Q Consensus 215 ~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q 293 (441)
|++.+. +..+...+...+-..+...|++++|..+|+...+. .+ .. | ...+++.+..+|...
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~----~g--~~---------p---~~~~y~~li~~l~r~ 475 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN----HR--IK---------P---RAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cC--CC---------C---CccchHhHHHHHHhc
Confidence 555554 22222223333444455556666666655554432 11 00 1 112355666777777
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhc
Q 013549 294 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD 373 (441)
Q Consensus 294 G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~ 373 (441)
|++++|++++++. +..|++ .+++.|...|...|+++.| +..+++.+++ .|++.. ...
T Consensus 476 G~~~eA~~~~~~~---------~~~p~~-~~~~~Ll~a~~~~g~~~~a------~~~~~~l~~~----~p~~~~---~y~ 532 (697)
T PLN03081 476 GLLDEAYAMIRRA---------PFKPTV-NMWAALLTACRIHKNLELG------RLAAEKLYGM----GPEKLN---NYV 532 (697)
T ss_pred CCHHHHHHHHHHC---------CCCCCH-HHHHHHHHHHHHcCCcHHH------HHHHHHHhCC----CCCCCc---chH
Confidence 7777777766542 233443 3467777777777777665 4455544322 333333 333
Q ss_pred cHHHHHHHhccHHHHHHHh
Q 013549 374 RTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 374 nl~~~~~~~g~yaeal~~~ 392 (441)
.+..+|...|++++|..+.
T Consensus 533 ~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4555788899999998864
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.26 E-value=3.9e-09 Score=109.55 Aligned_cols=228 Identities=11% Similarity=0.047 Sum_probs=159.9
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
.+|++++|..+|+++.+.. +++ .++..+. .+.++..+|+|++|+..+++..+..+.+. ..+.-++.+|.
T Consensus 130 ~~g~~~~A~~~l~~A~~~~-----~~~-~~~~~l~-~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~ 198 (398)
T PRK10747 130 QRGDEARANQHLERAAELA-----DND-QLPVEIT-RVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYI 198 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC-----Ccc-hHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHH
Confidence 4689999999999998643 222 2333222 38899999999999999999988887653 35566788899
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhh---------------------hh-------------HhHHHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYG---------------------AV-------------NSRANAVKGLVEL 203 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~---------------------~l-------------~~~a~al~gl~~~ 203 (441)
++|+++++..++.+..+.... ...+.. .+ ........+..+.
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~----~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~ 274 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVG----DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI 274 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH
Confidence 999999988766655422100 000000 00 0001112344556
Q ss_pred HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549 204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 283 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al 283 (441)
..|++++|+...+++++.. .++..+.-++.+ ..|++++|....++.+.-. |++ ...+
T Consensus 275 ~~g~~~~A~~~L~~~l~~~-~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~------------------P~~--~~l~ 331 (398)
T PRK10747 275 ECDDHDTAQQIILDGLKRQ-YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQH------------------GDT--PLLW 331 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhC------------------CCC--HHHH
Confidence 7899999999998888843 344455555544 3488888888888876541 111 1246
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
..+|.++..+|+|++|++.|++++++ +|+... +.-||.++..+|+.++| ..+|+++|...
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~~~-~~~La~~~~~~g~~~~A------~~~~~~~l~~~ 391 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ--------RPDAYD-YAWLADALDRLHKPEEA------AAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCHHH-HHHHHHHHHHcCCHHHH------HHHHHHHHhhh
Confidence 78999999999999999999999986 566544 44699999999999987 89999999875
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.5e-09 Score=111.23 Aligned_cols=227 Identities=14% Similarity=0.113 Sum_probs=178.9
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchh--H------------------------HHHHHHHHHHHHHcCChHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESW--R------------------------GISLLAMSTLLYESGNYVEAIEKL 131 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~--~------------------------a~~l~nLa~l~~~qG~y~eA~e~~ 131 (441)
++-+||+|+.+||..+....-.++.=|.- + -.|+.-+|+.|.-+++.++|+..|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 45679999999999887654444322110 0 012233567778888999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHH
Q 013549 132 QKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESA 211 (441)
Q Consensus 132 ~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eA 211 (441)
+||+++.+..++ +|--++-=|+.+-+-..|..-|+++++|-.... |+..-+|-+|-..+=..=|
T Consensus 354 kRALkLNp~~~~----aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy------------RAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 354 KRALKLNPKYLS----AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY------------RAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHhcCcchhH----HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH------------HHHhhhhHHHHHhcchHHH
Confidence 999999987653 343445558888888889888998886654433 3333457777777778889
Q ss_pred HHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 013549 212 ESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 291 (441)
Q Consensus 212 e~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~ 291 (441)
.-+|++|+.-.|........+|++|.+.++.+||+.+|.||+..- + + .-.++..||.+|.
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-------d--t-----------e~~~l~~LakLye 477 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-------D--T-----------EGSALVRLAKLYE 477 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-------c--c-----------chHHHHHHHHHHH
Confidence 999999999777777888999999999999999999999999871 1 1 1246889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
.++++.+|-.+|++.++.. ..-|..-|.|-.+..-||.-+...++|++|
T Consensus 478 ~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 9999999999999999988 678999999998888899999999999998
No 46
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.23 E-value=6.8e-10 Score=105.89 Aligned_cols=178 Identities=20% Similarity=0.186 Sum_probs=132.3
Q ss_pred CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (441)
Q Consensus 102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~ 181 (441)
+..+..+..+.++|..+...|+|++|+..|++++...+... ....++..++.++..+|++++|...++++++..-....
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 34456788999999999999999999999999988876531 12236788999999999999999999988754432111
Q ss_pred CcchhhhhhHhHHHHHHHHHHHHc--------CCHHHHHHHHHhhhhccCCchHH-----------------HHHHHHHH
Q 013549 182 ENYKTYGAVNSRANAVKGLVELAH--------GNLESAESFFKGLQEEEGCTGSA-----------------ALSYGEYL 236 (441)
Q Consensus 182 ~~~~~~~~l~~~a~al~gl~~~~q--------G~y~eAe~l~~~aL~~~~~~~~~-----------------a~~~a~~~ 236 (441)
. ..+....|.++... |++++|...|++++...+....+ ...+|.+|
T Consensus 106 --------~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 106 --------A-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred --------h-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11223456666544 89999999999999844433211 12467889
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
..+|+|.+|+..|+++++.. .. . |. ...++.++|.+|..+|+|++|.+++++.
T Consensus 177 ~~~g~~~~A~~~~~~al~~~---p~---~---------~~--~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENY---PD---T---------PA--TEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHcCChHHHHHHHHHHHHHC---CC---C---------cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999873 11 0 11 2346789999999999999999977654
No 47
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.23 E-value=8.2e-10 Score=121.68 Aligned_cols=129 Identities=8% Similarity=0.029 Sum_probs=112.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
+++-+...+|+||+|+.++++++...+.+..+..+++.++..+++++||...++++|.+- |+
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------------------p~ 152 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------------------SS 152 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------------------CC
Confidence 456666789999999999999999888888888999999999999999999999999881 11
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
...+++.+|.++..+|+|+||+++|++++. .||+-..++.++|.++..+|+.++| ...|++|++
T Consensus 153 --~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A------~~~~~~a~~ 216 (694)
T PRK15179 153 --SAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRA------RDVLQAGLD 216 (694)
T ss_pred --CHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHHH
Confidence 234678999999999999999999999986 6788888899999999999999987 889999988
Q ss_pred Hhh
Q 013549 357 FLK 359 (441)
Q Consensus 357 i~~ 359 (441)
...
T Consensus 217 ~~~ 219 (694)
T PRK15179 217 AIG 219 (694)
T ss_pred hhC
Confidence 863
No 48
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=7.3e-10 Score=111.67 Aligned_cols=208 Identities=13% Similarity=0.050 Sum_probs=147.4
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~ 183 (441)
.|+-+..+..+|.+|...|++.+|...+.++....+..+... ......+.++...|++++|..+++++++. .|..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~P~~ 76 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER-ERAHVEALSAWIAGDLPKALALLEQLLDD----YPRD 76 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCc
Confidence 577889999999999999999999999999877766543221 22333456677889999999888888643 2211
Q ss_pred chhhhhhHhHHHHHHHHHHHHcC----CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh
Q 013549 184 YKTYGAVNSRANAVKGLVELAHG----NLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ 259 (441)
Q Consensus 184 ~~~~~~l~~~a~al~gl~~~~qG----~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~ 259 (441)
...+ .+ +..+...| +.+.+...+......++........++.++..+|+|++|+..+++++++ .
T Consensus 77 ---~~a~-----~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~ 144 (355)
T cd05804 77 ---LLAL-----KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---N 144 (355)
T ss_pred ---HHHH-----HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C
Confidence 1111 11 33334444 4444444444422233334445556788999999999999999999998 1
Q ss_pred cccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH-HHHHHHHHHHHHhhch
Q 013549 260 KDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQ 338 (441)
Q Consensus 260 ~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va-~~l~nLa~ly~~qG~~ 338 (441)
.. . ......+|.+|..+|++++|+.++++++..... +|... ..+.++|.+|..+|++
T Consensus 145 p~-----~------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 145 PD-----D------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred CC-----C------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCH
Confidence 11 1 134689999999999999999999999987653 44443 4567899999999999
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 013549 339 EHSSALLIQEGLYRRALE 356 (441)
Q Consensus 339 eeA~~~~~Ae~ly~rAL~ 356 (441)
++| ...|++++.
T Consensus 203 ~~A------~~~~~~~~~ 214 (355)
T cd05804 203 EAA------LAIYDTHIA 214 (355)
T ss_pred HHH------HHHHHHHhc
Confidence 987 888888844
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.22 E-value=2.8e-09 Score=110.94 Aligned_cols=240 Identities=12% Similarity=0.057 Sum_probs=149.5
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
.+|++++|..+++++.... +++. ..+....+.++..+|+|++|...+++.++..+.+. .++.-++.+|.
T Consensus 130 ~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~ 198 (409)
T TIGR00540 130 QRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYI 198 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Confidence 3577777777777776422 1221 01122237777777777777777777777665542 24455666677
Q ss_pred hcCCcchhHHHHHHHHHHHHhc-------------------CCC--------cchhhhh---hHhHHHHHHHHHHHHcCC
Q 013549 158 QLGQDDTSSVVADKCLQLCEKH-------------------KPE--------NYKTYGA---VNSRANAVKGLVELAHGN 207 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~-------------------~~~--------~~~~~~~---l~~~a~al~gl~~~~qG~ 207 (441)
++|+++++..++.+.++.-... ... .+..... -........+..+..+|+
T Consensus 199 ~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~ 278 (409)
T TIGR00540 199 RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD 278 (409)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 7777776666665555320000 000 0000000 011222234556678999
Q ss_pred HHHHHHHHHhhhhccCCchHHH-HHH-HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHH
Q 013549 208 LESAESFFKGLQEEEGCTGSAA-LSY-GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 285 (441)
Q Consensus 208 y~eAe~l~~~aL~~~~~~~~~a-~~~-a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~n 285 (441)
+++|+..++++++..+...... ..+ .......++.++++...++++... |+.+....+..
T Consensus 279 ~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~------------------p~~~~~~ll~s 340 (409)
T TIGR00540 279 HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV------------------DDKPKCCINRA 340 (409)
T ss_pred hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC------------------CCChhHHHHHH
Confidence 9999999999999544333211 111 112233578888888888888661 11111234679
Q ss_pred HHHHHHHcCCHHHHHHHHHH--HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549 286 LGQLEAHMGNFGDAEEILTR--TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 361 (441)
Q Consensus 286 Lg~ly~~qG~y~eAe~l~~r--AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~ 361 (441)
||.++..+|+|++|.++|++ ++++ +|+... +..||.++..+|+.++| ..+|+++|...-+.
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~--------~p~~~~-~~~La~ll~~~g~~~~A------~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKE--------QLDAND-LAMAADAFDQAGDKAEA------AAMRQDSLGLMLAI 403 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhc--------CCCHHH-HHHHHHHHHHcCCHHHH------HHHHHHHHHHHhcc
Confidence 99999999999999999995 5544 566655 44899999999999887 89999999887653
No 50
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.22 E-value=6.5e-09 Score=115.17 Aligned_cols=218 Identities=11% Similarity=-0.019 Sum_probs=142.8
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..|++++|+.+|+..... ++..|+ ..+++.+-..+...|+++.|..++....... +..++.+++.|...|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~-----~~~~~~-~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 99 ACGRHREALELFEILEAG-----CPFTLP-ASTYDALVEACIALKSIRCVKAVYWHVESSG---FEPDQYMMNRVLLMHV 169 (697)
T ss_pred cCCCHHHHHHHHHHHHhc-----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCcchHHHHHHHHHHh
Confidence 357899999999987642 122232 3568888888889999999999988765432 2334567888999999
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-CCch----------
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE-GCTG---------- 226 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~-~~~~---------- 226 (441)
..|+.++|..++++.. .+ +... .+.....+...|++++|..+|++.+... ....
T Consensus 170 k~g~~~~A~~lf~~m~------~~-------~~~t--~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 170 KCGMLIDARRLFDEMP------ER-------NLAS--WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred cCCCHHHHHHHHhcCC------CC-------Ceee--HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 9999988888776542 01 0101 1122334567899999999999887621 1111
Q ss_pred -------------------------HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH
Q 013549 227 -------------------------SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA 281 (441)
Q Consensus 227 -------------------------~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~ 281 (441)
.+.+.+-..|.+.|++++|..+|++. .. + .+.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-------~~---~-------------~~v 291 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-------PE---K-------------TTV 291 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC-------CC---C-------------Chh
Confidence 11233455677778888877777542 11 0 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 355 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL 355 (441)
+++.|...|...|++++|..+|.+.... | -.|+ ..+++.+-..|...|++++| +.++...+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~~~ll~a~~~~g~~~~a------~~i~~~m~ 352 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTFSIMIRIFSRLALLEHA------KQAHAGLI 352 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhccchHHH------HHHHHHHH
Confidence 5788888999999999998888876431 2 1233 24777788888888887776 45554443
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.4e-10 Score=114.87 Aligned_cols=272 Identities=16% Similarity=0.148 Sum_probs=183.8
Q ss_pred CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
+.+-+++..+-.+...-. ++|.+-..+.+..|++. |=|+..- -..|| .+...|+..+=-.+-.+.
T Consensus 240 l~~~~dll~~~ad~~y~~-------c~f~~c~kit~~lle~d-----pfh~~~~--~~~ia-~l~el~~~n~Lf~lsh~L 304 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYG-------CRFKECLKITEELLEKD-----PFHLPCL--PLHIA-CLYELGKSNKLFLLSHKL 304 (611)
T ss_pred hhhcHHHHHHHHHHHHHc-------ChHHHHHHHhHHHHhhC-----CCCcchH--HHHHH-HHHHhcccchHHHHHHHH
Confidence 344455555554443332 34556566665555533 3444433 33445 566667665544443443
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
.+..+.. ..+|.+++-.|+..|++++|..++.+|-.+-..-++ +..-.|-.+..+|..|||...
T Consensus 305 V~~yP~~----a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp------------aWl~fghsfa~e~EhdQAmaa 368 (611)
T KOG1173|consen 305 VDLYPSK----ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP------------AWLAFGHSFAGEGEHDQAMAA 368 (611)
T ss_pred HHhCCCC----CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH------------HHHHHhHHhhhcchHHHHHHH
Confidence 3333322 237888888899999999999999988433222221 112235555679999999999
Q ss_pred HHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549 215 FKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 293 (441)
Q Consensus 215 ~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q 293 (441)
|-.|-. -..+|... +-+|.=|..+++++-|+.+|.+|++|. -. +. -.++-+|.+....
T Consensus 369 Y~tAarl~~G~hlP~-LYlgmey~~t~n~kLAe~Ff~~A~ai~---P~----Dp-------------lv~~Elgvvay~~ 427 (611)
T KOG1173|consen 369 YFTAARLMPGCHLPS-LYLGMEYMRTNNLKLAEKFFKQALAIA---PS----DP-------------LVLHELGVVAYTY 427 (611)
T ss_pred HHHHHHhccCCcchH-HHHHHHHHHhccHHHHHHHHHHHHhcC---CC----cc-------------hhhhhhhheeehH
Confidence 998877 33344222 223445667999999999999999993 11 11 1368899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhc
Q 013549 294 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD 373 (441)
Q Consensus 294 G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~ 373 (441)
+.|.+|..+|+.+| +..+..+++-|....+++|||-+|+.+++|++| ...|++||..-. ..+ .+..
T Consensus 428 ~~y~~A~~~f~~~l-~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA------I~~~q~aL~l~~----k~~---~~~a 493 (611)
T KOG1173|consen 428 EEYPEALKYFQKAL-EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA------IDYYQKALLLSP----KDA---STHA 493 (611)
T ss_pred hhhHHHHHHHHHHH-HHhhhccccccchhHHHHhHHHHHHHHhhHHHH------HHHHHHHHHcCC----Cch---hHHH
Confidence 99999999999999 556667777778999999999999999999987 899999987642 122 2333
Q ss_pred cHHHHHHHhccHHHHHHHh
Q 013549 374 RTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 374 nl~~~~~~~g~yaeal~~~ 392 (441)
.+|.+|...|+.+.|+..+
T Consensus 494 sig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHhcChHHHHHHH
Confidence 4678888888888887654
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.16 E-value=3.5e-09 Score=101.02 Aligned_cols=183 Identities=13% Similarity=0.016 Sum_probs=134.4
Q ss_pred CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
|.-+..+..+.+.+..+. ..|+|++|+..|++++... +++|....++..+|.+|..+|+|++|+..|++++
T Consensus 27 ~~~~~~~~~~~~~g~~~~----~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEAL----DSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred CcccCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445566778888888873 3689999999999999865 6677788899999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHhc--------CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHh---------HHHHHH
Q 013549 136 NFKNSILGVRVAAMEALAGLYLQL--------GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNS---------RANAVK 198 (441)
Q Consensus 136 ~i~~~~lg~~~~al~~La~l~~~~--------G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~---------~a~al~ 198 (441)
...+..... ..++..++.++.++ |++++|...+++++...-... .....+.. ......
T Consensus 98 ~~~p~~~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 98 RLHPNHPDA-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE----YAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred HHCcCCCch-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 888754321 23567777777765 677788888877764421111 00001100 001124
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhccC---CchHHHHHHHHHHHHccChHHHHHHHHHH
Q 013549 199 GLVELAHGNLESAESFFKGLQEEEG---CTGSAALSYGEYLHATRNFLLAKKFYQKV 252 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~~~---~~~~~a~~~a~~~~~qG~y~eA~~ly~rA 252 (441)
+.++..+|+|++|...|+++++..+ ....+...++.++...|++++|.++++..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677899999999999999999433 33466788899999999999999976654
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.15 E-value=1.2e-08 Score=106.16 Aligned_cols=254 Identities=10% Similarity=0.121 Sum_probs=150.7
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..|+|.+|+..+.++.... |.-...+.-.|.++..+|++++|.+.++++.+..+.. + ....-..+.++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~-~--l~~~~~~a~l~l 164 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND-N--ILVEIARTRILL 164 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-c--hHHHHHHHHHHH
Confidence 4689999999999887643 2234455677888999999999999999987655432 1 111122477888
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--------------
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG-------------- 223 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~-------------- 223 (441)
++|++++|...+++.++. .|.+. .+..+.+.++..+|++++|.+++++.++...
T Consensus 165 ~~~~~~~Al~~l~~l~~~----~P~~~--------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~ 232 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEM----APRHK--------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE 232 (409)
T ss_pred HCCCHHHHHHHHHHHHHh----CCCCH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999998877666422 23221 1223567788899999999988887775100
Q ss_pred ----------------------------CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch
Q 013549 224 ----------------------------CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL 275 (441)
Q Consensus 224 ----------------------------~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~ 275 (441)
..+.....++..+...|++++|+...+++++.. - +....
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---p---d~~~~------- 299 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---G---DDRAI------- 299 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---C---Ccccc-------
Confidence 011222345556666677777777777766651 0 00000
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH--HHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549 276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG--VVLTCLALMFRNKAMQEHSSALLIQEGLYRR 353 (441)
Q Consensus 276 ~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va--~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r 353 (441)
... .-....+...++.+++++.+++++. .||+-. ..+..||.++.++|++++| ...+++
T Consensus 300 ---~~~--~l~~~~~l~~~~~~~~~~~~e~~lk--------~~p~~~~~~ll~sLg~l~~~~~~~~~A------~~~le~ 360 (409)
T TIGR00540 300 ---SLP--LCLPIPRLKPEDNEKLEKLIEKQAK--------NVDDKPKCCINRALGQLLMKHGEFIEA------ADAFKN 360 (409)
T ss_pred ---hhH--HHHHhhhcCCCChHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHHHcccHHHH------HHHHHH
Confidence 000 1111122234556666666655553 344444 6677777888888887776 666664
Q ss_pred HHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 354 ALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 354 AL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
+..+-.. |+++. ...++.++...|+.++|...+
T Consensus 361 a~a~~~~--p~~~~----~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 361 VAACKEQ--LDAND----LAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred hHHhhcC--CCHHH----HHHHHHHHHHcCCHHHHHHHH
Confidence 3333221 22221 124566666666666665544
No 54
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.15 E-value=2.2e-09 Score=106.38 Aligned_cols=201 Identities=16% Similarity=0.107 Sum_probs=130.3
Q ss_pred HHHHHHcCCHHHHHHHHHhhhh---ccCCchHHHHHH---HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549 199 GLVELAHGNLESAESFFKGLQE---EEGCTGSAALSY---GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 272 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~---~~~~~~~~a~~~---a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~ 272 (441)
|..|...|+|++|...|.++.+ .......++..| +.+| .++++++|+.+|++|++++.+...
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~----------- 109 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGR----------- 109 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCc-----------
Confidence 4456689999999999999987 222233344433 4454 445999999999999999854322
Q ss_pred cchhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549 273 MALEEVALAATFALGQLEAHM-GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 351 (441)
Q Consensus 273 ~~~~~~~~~al~nLg~ly~~q-G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly 351 (441)
+. .-...+.++|.+|..+ |++++|.++|++|+++++..- ..-....++.++|.++...|+|++| ..+|
T Consensus 110 --~~-~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A------~~~~ 178 (282)
T PF14938_consen 110 --FS-QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEA------IEIY 178 (282)
T ss_dssp --HH-HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHH------HHHH
T ss_pred --HH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHH------HHHH
Confidence 11 1123567999999999 999999999999999999753 3334557889999999999999987 8899
Q ss_pred HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc---------hhhHHHHHHHHHHHHHhccChhHHHHhc
Q 013549 352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN---------RKDEGERMKRWAEAAWRNRRVSLAEALN 422 (441)
Q Consensus 352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~---------r~~eae~~~~~a~~~~~~~r~~~~~~l~ 422 (441)
++..............+-..+-+..++++..|++-.|...... .-.|+.-+.....++-.+.-=.+.+++.
T Consensus 179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 179 EEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9987764221112223333344667889999998777654321 2345554545555555444334444443
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.14 E-value=3e-08 Score=111.30 Aligned_cols=165 Identities=13% Similarity=0.050 Sum_probs=106.1
Q ss_pred HHHHHcCCHHHHHHHHHhhhhccCC----chHH--HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcc--cc
Q 013549 200 LVELAHGNLESAESFFKGLQEEEGC----TGSA--ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG--SC 271 (441)
Q Consensus 200 l~~~~qG~y~eAe~l~~~aL~~~~~----~~~~--a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg--~~ 271 (441)
-+|+.+++.++|+++|++++...+. .... ...+--.|..+|+|++|..+.++..+----... .+| ..
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~-----~~~~~~~ 409 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG-----VYGLPGK 409 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe-----ccCCCCC
Confidence 3455677777777777777662211 1111 123334566788888888888887652000000 011 01
Q ss_pred ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549 272 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 351 (441)
Q Consensus 272 ~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly 351 (441)
.++|+ .......+++++...|++.+|++.+++.+.+ . |.-...+..+|.++..+|+..+| +..+
T Consensus 410 ~pn~d--~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-----a---P~n~~l~~~~A~v~~~Rg~p~~A------~~~~ 473 (822)
T PRK14574 410 EPNDD--WIEGQTLLVQSLVALNDLPTAQKKLEDLSST-----A---PANQNLRIALASIYLARDLPRKA------EQEL 473 (822)
T ss_pred CCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHhcCCHHHH------HHHH
Confidence 22233 3356678999999999999999999998764 3 44555566888999999998887 7778
Q ss_pred HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
++++.+ +|+-....-+.+.+++.+|++.+|....
T Consensus 474 k~a~~l-------~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 474 KAVESL-------APRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHhhh-------CCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 666554 2333334447888999999999995543
No 56
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.13 E-value=1.2e-09 Score=99.46 Aligned_cols=119 Identities=12% Similarity=0.006 Sum_probs=89.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCC---chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGC---TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~---~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
..|..+..+|+|++|+.+|++++...+. ...+..++|.++..+|++++|+.+|++|+.+. .. . +
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~-----~-~---- 106 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PF-----L-P---- 106 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC-----c-H----
Confidence 4577778899999999999999984322 34567889999999999999999999999982 11 1 1
Q ss_pred chhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHH
Q 013549 274 ALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV---GVVLTCLA 329 (441)
Q Consensus 274 ~~~~~~~~-al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v---a~~l~nLa 329 (441)
..+..++ .+.++|.++..+|++++|...|.+|+.++++.+|.+|+.+ ...|.++|
T Consensus 107 -~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~ 165 (168)
T CHL00033 107 -QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITG 165 (168)
T ss_pred -HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 0011112 2345555555999999999999999999999999999554 44444443
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.3e-09 Score=107.55 Aligned_cols=223 Identities=15% Similarity=0.110 Sum_probs=175.0
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|-+.+|..-++++|+-+ .||+ |+.-|+.+|.+..+-..|+..|...++..+. +|.-+-..+.+|..
T Consensus 236 Lgm~r~AekqlqssL~q~------~~~d---TfllLskvY~ridQP~~AL~~~~~gld~fP~----~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQF------PHPD---TFLLLSKVYQRIDQPERALLVIGEGLDSFPF----DVTYLLGQARIHEA 302 (478)
T ss_pred hcChhhhHHHHHHHhhcC------Cchh---HHHHHHHHHHHhccHHHHHHHHhhhhhcCCc----hhhhhhhhHHHHHH
Confidence 355889999999998755 5665 5777888999999999999988887776653 23445567888999
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA 238 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~ 238 (441)
++++++|..+|...++. ++++ .+. .+..+..|..-++.+-|..+|+|.|.-....+...+|+|.+...
T Consensus 303 m~~~~~a~~lYk~vlk~----~~~n---vEa-----iAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL----HPIN---VEA-----IACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY 370 (478)
T ss_pred HHhHHHHHHHHHHHHhc----CCcc---cee-----eeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence 99999999999887633 3221 112 23456677889999999999999999666677788899888888
Q ss_pred ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549 239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 318 (441)
Q Consensus 239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H 318 (441)
-++|+-+.+.|+||+...+. .+ .......|||.+....|++.-|...|+-||. +.
T Consensus 371 aqQ~D~~L~sf~RAlstat~-~~----------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d 425 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQ-PG----------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SD 425 (478)
T ss_pred hcchhhhHHHHHHHHhhccC-cc----------------hhhhhhhccceeEEeccchHHHHHHHHHHhc--------cC
Confidence 89999999999999988421 11 1234578999999999999999999998884 56
Q ss_pred chHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 319 PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 319 P~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
|+-+.+|||||.+-.+.|+.++| ..+|.-|-..
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~A------rsll~~A~s~ 458 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGA------RSLLNAAKSV 458 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHH------HHHHHHhhhh
Confidence 77899999999999999998887 6777777544
No 58
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.2e-09 Score=105.88 Aligned_cols=257 Identities=13% Similarity=0.081 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---------------
Q 013549 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR--------------- 145 (441)
Q Consensus 81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~--------------- 145 (441)
..+++++=+++-.++. =|.--..-+..|.+.+.+-+|++|+..|+...+-.+=-++..
T Consensus 242 q~~e~~~k~e~l~~~g-------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVG-------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHhcc-------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 4667777777766542 122334566788899999999999999998754322111110
Q ss_pred ---------------HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549 146 ---------------VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (441)
Q Consensus 146 ---------------~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e 210 (441)
..+.--+++.|.-.+++..|.++++++|++-.+.. .+..|.|-=|....+-..
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~------------~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL------------SAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh------------HHHHHhhHHHHHhcccHH
Confidence 00000134444455556667777777764432221 123355655666677777
Q ss_pred HHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549 211 AESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 290 (441)
Q Consensus 211 Ae~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly 290 (441)
|..-|++|++..+....+...+|..|-.++-..=|.-+|+||++. +. ++ -.....||+.|
T Consensus 383 Ai~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~----kP---nD-------------sRlw~aLG~CY 442 (559)
T KOG1155|consen 383 AIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL----KP---ND-------------SRLWVALGECY 442 (559)
T ss_pred HHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc----CC---Cc-------------hHHHHHHHHHH
Confidence 777788887766656667777888888888888888888888876 11 01 12357899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHh
Q 013549 291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVET 370 (441)
Q Consensus 291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~ 370 (441)
.+.++.+||+..|++|+..-.. -...|..||.+|.+.+++++| -..|.+.++.....+...|.+..
T Consensus 443 ~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eA------a~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEA------AQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred HHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHhhcccchHHHH
Confidence 9999999999999999875432 357899999999999999887 78999999988666777777777
Q ss_pred hhccHHHHHHHhccHHHHHH
Q 013549 371 KVDRTDIVALARGGYAEALS 390 (441)
Q Consensus 371 ~l~nl~~~~~~~g~yaeal~ 390 (441)
..-.|+.-+...++|++|-.
T Consensus 509 a~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHHHhhcchHHHHH
Confidence 77778999999999988855
No 59
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=8.1e-10 Score=100.65 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=94.4
Q ss_pred cCCHHHHHHHHHhhhh--ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 205 HGNLESAESFFKGLQE--EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 205 qG~y~eAe~l~~~aL~--~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
+..|..+...+...+. ...........+|.++..+|+|++|+.+|++|+.+. .. +. ....+
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~~---~~-----------~~~~~ 74 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE---ID---PY-----------DRSYI 74 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cc---ch-----------hhHHH
Confidence 4445555555544443 122223445677889999999999999999999982 11 10 02346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cC
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-AP 361 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~ 361 (441)
++++|.+|..+|++++|+.+|++|+.+... .+..|+.++.++.++|.++..+|++++| ...|.+++++++ +.
T Consensus 75 ~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i~~~~~~~~~~~g~~~~A------~~~~~~a~~~~~~a~ 147 (168)
T CHL00033 75 LYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVICHYRGEQAIEQGDSEIA------EAWFDQAAEYWKQAI 147 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhhHHHHHcccHHHH------HHHHHHHHHHHHHHH
Confidence 899999999999999999999999988322 2223344444444444444488888776 888999999985 44
Q ss_pred CCCCcc
Q 013549 362 PLESEG 367 (441)
Q Consensus 362 ~~~~~~ 367 (441)
+.+++.
T Consensus 148 ~~~p~~ 153 (168)
T CHL00033 148 ALAPGN 153 (168)
T ss_pred HhCccc
Confidence 555544
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.09 E-value=4.6e-08 Score=101.53 Aligned_cols=246 Identities=12% Similarity=0.110 Sum_probs=162.5
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|+|++|+....++-.. .++|.+. +...+.....+|++++|...|+++.+..+... ....--.+.++..
T Consensus 97 eGd~~~A~k~l~~~~~~------~~~p~l~--~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~---~~~~l~~a~l~l~ 165 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH------AEQPVVN--YLLAAEAAQQRGDEARANQHLERAAELADNDQ---LPVEITRVRIQLA 165 (398)
T ss_pred CCCHHHHHHHHHHHHhc------ccchHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHH
Confidence 58899999777765432 2344433 44446666999999999999999977655431 1111123678889
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----------------
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE----------------- 221 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~----------------- 221 (441)
+|++++|...+++..+.. |.+. .+..+...+|..+|++++|..++.+..+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~----P~~~--------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 166 RNENHAARHGVDKLLEVA----PRHP--------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred CCCHHHHHHHHHHHHhcC----CCCH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999998887775332 2211 12224566677889999998766655430
Q ss_pred -------------------------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 222 -------------------------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 222 -------------------------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
.+..+.+...|+..+...|+.++|+...++++.. .. ++
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~-------------~~- 296 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QY-------------DE- 296 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-------------CH-
Confidence 0112334556788888899999999999888763 10 01
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
.+ ..-.+.+ ..|+++++.+..++.+ +.||+-...+..+|.++..+|++++| ...|+++++
T Consensus 297 --~l--~~l~~~l--~~~~~~~al~~~e~~l--------k~~P~~~~l~l~lgrl~~~~~~~~~A------~~~le~al~ 356 (398)
T PRK10747 297 --RL--VLLIPRL--KTNNPEQLEKVLRQQI--------KQHGDTPLLWSTLGQLLMKHGEWQEA------SLAFRAALK 356 (398)
T ss_pred --HH--HHHHhhc--cCCChHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHh
Confidence 11 1112222 3488888877777666 57888888899999999999999887 888999887
Q ss_pred HhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 357 FLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 357 i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
+. |+.+. .-.++.++..+|+.++|...+
T Consensus 357 ~~----P~~~~----~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 357 QR----PDAYD----YAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred cC----CCHHH----HHHHHHHHHHcCCHHHHHHHH
Confidence 62 22222 224777778888877776654
No 61
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.09 E-value=7.9e-09 Score=102.37 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=117.2
Q ss_pred CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (441)
Q Consensus 103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~ 182 (441)
+..+.+..+..-|..|...|+|++|.+.|.++.++... . +....+...+..
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~-~-----------------~~~~~Aa~~~~~----------- 80 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK-L-----------------GDKFEAAKAYEE----------- 80 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-T-----------------T-HHHHHHHHHH-----------
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-c-----------------CCHHHHHHHHHH-----------
Confidence 56667777888888888888888888888887555443 1 221111111111
Q ss_pred cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh---ccCCc---hHHHHHHHHHHHHc-cChHHHHHHHHHHHHH
Q 013549 183 NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE---EEGCT---GSAALSYGEYLHAT-RNFLLAKKFYQKVIEV 255 (441)
Q Consensus 183 ~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~---~~~~~---~~~a~~~a~~~~~q-G~y~eA~~ly~rAL~i 255 (441)
.+.++ ..+++++|..+|++++. ..... ......+|.+|..+ |++++|.++|++|+++
T Consensus 81 ---------------Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 81 ---------------AANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp ---------------HHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred ---------------HHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12222 44488888888888887 22222 23345679999999 9999999999999999
Q ss_pred HHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549 256 LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 335 (441)
Q Consensus 256 ~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q 335 (441)
++.... .......+.++|.++..+|+|++|.++|++......+.-.. .+.+...+.+...++-.+
T Consensus 145 y~~e~~--------------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-~~~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 145 YEQEGS--------------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-KYSAKEYFLKAILCHLAM 209 (282)
T ss_dssp HHHTT---------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-GHHHHHHHHHHHHHHHHT
T ss_pred HHHCCC--------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHc
Confidence 754221 11133467899999999999999999999987754333222 235667778888899999
Q ss_pred hchhhh
Q 013549 336 AMQEHS 341 (441)
Q Consensus 336 G~~eeA 341 (441)
|++..|
T Consensus 210 ~D~v~A 215 (282)
T PF14938_consen 210 GDYVAA 215 (282)
T ss_dssp T-HHHH
T ss_pred CCHHHH
Confidence 987665
No 62
>PLN03077 Protein ECB2; Provisional
Probab=99.09 E-value=3.6e-08 Score=111.73 Aligned_cols=181 Identities=15% Similarity=0.076 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh--hh----------------
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK--NS---------------- 140 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~--~~---------------- 140 (441)
.|++++|..+|++... |+ ..+++.|-..|.+.|++++|+++|++..... +.
T Consensus 235 ~g~~~~A~~lf~~m~~----------~d-~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 235 CGDVVSARLVFDRMPR----------RD-CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred CCCHHHHHHHHhcCCC----------CC-cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 3567777777776531 11 1357777777777777777777777654321 00
Q ss_pred --------------hhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcC
Q 013549 141 --------------ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG 206 (441)
Q Consensus 141 --------------~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG 206 (441)
.+..++.+++.|...|...|+.++|..++++.. .... .. .+.....|...|
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~------~s-----~n~li~~~~~~g 368 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA------VS-----WTAMISGYEKNG 368 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe------ee-----HHHHHHHHHhCC
Confidence 011233455666666666677666666655431 0000 01 111233445677
Q ss_pred CHHHHHHHHHhhhhc-cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHH
Q 013549 207 NLESAESFFKGLQEE-EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 285 (441)
Q Consensus 207 ~y~eAe~l~~~aL~~-~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~n 285 (441)
++++|..+|++.... -.+...+..++-..+...|++++|.++++.++.. + +. + ...+.+.
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-----g------~~-----~---~~~~~n~ 429 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-----G------LI-----S---YVVVANA 429 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-----C------CC-----c---chHHHHH
Confidence 777777777766551 1111122223333445566666666666655433 1 00 0 1223455
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 013549 286 LGQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 286 Lg~ly~~qG~y~eAe~l~~ 304 (441)
|-..|...|++++|+++|.
T Consensus 430 Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 6666666666666666654
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=3.5e-09 Score=110.95 Aligned_cols=209 Identities=16% Similarity=0.177 Sum_probs=160.9
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|...+|.-.||.+.. +.|.-+.+-.-||.+...-++=..||.-+++++++.+.-+ .++-+|+.-|..
T Consensus 298 nG~L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl----eaLmaLAVSytN 365 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL----EALMALAVSYTN 365 (579)
T ss_pred cCCchHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH----HHHHHHHHHHhh
Confidence 3557799999999884 6888899999999999999999999999999998876654 366777887888
Q ss_pred cCCcchhHHHHHHHHHHH-------HhcCCCc---------chhhhh---------------hHhHHHHHHHHHHHHcCC
Q 013549 159 LGQDDTSSVVADKCLQLC-------EKHKPEN---------YKTYGA---------------VNSRANAVKGLVELAHGN 207 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~-------~~~~~~~---------~~~~~~---------------l~~~a~al~gl~~~~qG~ 207 (441)
.|...+|..++++=+..- ....+.. ...... +..-....+|++|...|+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888777777666643221 0000000 000000 111122346888889999
Q ss_pred HHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHH
Q 013549 208 LESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG 287 (441)
Q Consensus 208 y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg 287 (441)
||+|..+|+.||...|......+.||..+-.--+.+||+.-|+|||++ .-+ .+.+-+|||
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~-----------------yVR~RyNlg 505 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPG-----------------YVRVRYNLG 505 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCC-----------------eeeeehhhh
Confidence 999999999999988878888899999999999999999999999999 222 234678999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549 288 QLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 319 (441)
Q Consensus 288 ~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP 319 (441)
..+..+|.|+||.++|..||.+.++..+..--
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~ 537 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKA 537 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccC
Confidence 99999999999999999999999996554443
No 64
>PLN03077 Protein ECB2; Provisional
Probab=99.07 E-value=3e-08 Score=112.34 Aligned_cols=189 Identities=11% Similarity=0.041 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
+++.|-..|.+.|++++|++.|++.. ...+.+++.+...|.+.|+..+|..++++.+. ...+.. .+
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~---~~~pd~----~t 491 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIP-------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL---TLKPNS----VT 491 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh---CCCCCH----hH
Confidence 44555566666666666666666531 11233667777777777777777777776642 111110 00
Q ss_pred hHhHHH------------------------------HHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549 190 VNSRAN------------------------------AVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT 239 (441)
Q Consensus 190 l~~~a~------------------------------al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q 239 (441)
+..... +.+-..|...|++++|...|.+. . ....+.+.+...|...
T Consensus 492 ~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~---~d~~s~n~lI~~~~~~ 567 (857)
T PLN03077 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E---KDVVSWNILLTGYVAH 567 (857)
T ss_pred HHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C---CChhhHHHHHHHHHHc
Confidence 000000 00113455678888888777775 1 1222344555566777
Q ss_pred cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549 240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 319 (441)
Q Consensus 240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP 319 (441)
|+.++|+.+|++..+. + +. |+. .+++.+=..+.+.|++++|..+|++....+ | -.|
T Consensus 568 G~~~~A~~lf~~M~~~-----g------~~-----Pd~---~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~----g-i~P 623 (857)
T PLN03077 568 GKGSMAVELFNRMVES-----G------VN-----PDE---VTFISLLCACSRSGMVTQGLEYFHSMEEKY----S-ITP 623 (857)
T ss_pred CCHHHHHHHHHHHHHc-----C------CC-----CCc---ccHHHHHHHHhhcChHHHHHHHHHHHHHHh----C-CCC
Confidence 8888888888775532 1 01 222 234455556777788777777777654322 1 234
Q ss_pred hHHHHHHHHHHHHHHhhchhhh
Q 013549 320 KVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 320 ~va~~l~nLa~ly~~qG~~eeA 341 (441)
++ .++++|..+|.+.|++++|
T Consensus 624 ~~-~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 624 NL-KHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred ch-HHHHHHHHHHHhCCCHHHH
Confidence 43 5677777778887777776
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.03 E-value=6e-08 Score=108.88 Aligned_cols=171 Identities=11% Similarity=-0.017 Sum_probs=128.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Q 013549 99 DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK 178 (441)
Q Consensus 99 ~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~ 178 (441)
.+.+.||. +...-+.+..++|+|++|++.|+++++..+.... ++..++.++..+|++++|+.++++++ .
T Consensus 28 ~~~p~~~~---~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~----av~dll~l~~~~G~~~~A~~~~eka~----~ 96 (822)
T PRK14574 28 VVNPAMAD---TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG----QVDDWLQIAGWAGRDQEVIDVYERYQ----S 96 (822)
T ss_pred ccCccchh---HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh----hHHHHHHHHHHcCCcHHHHHHHHHhc----c
Confidence 45566655 7788889999999999999999999988876421 22367777888899999999999886 1
Q ss_pred cCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Q 013549 179 HKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAE 258 (441)
Q Consensus 179 ~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~ 258 (441)
..+ ...+.....+.++..+|+|++|+.+|+++++..+..+.+...++.++...|++++|+..+++++...
T Consensus 97 p~n--------~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-- 166 (822)
T PRK14574 97 SMN--------ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-- 166 (822)
T ss_pred CCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--
Confidence 111 1112222235578889999999999999999766666676777888999999999999999987761
Q ss_pred hcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 259 QKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 259 ~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
. + ......++.++..++++.+|++.|+++++.
T Consensus 167 --p--------------~---~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 167 --P--------------T---VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred --c--------------c---hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 1 0 111245677777789998899999998875
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.8e-08 Score=100.88 Aligned_cols=296 Identities=16% Similarity=0.092 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCC-----chhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLA-----ESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~-----h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
..+.-+.-|-.++.+ ....|..|.+..++.-...+.....+ -...|.+|+-.|..+.-.|++-.|.+.+..+
T Consensus 276 sDa~l~~~l~~l~~~---~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 276 SDAALAEALEALEKG---LEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred chhhHHHHHHHHHhh---CchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 445555666666622 45679999998888766555544322 2346899999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
+.+.+.... .+-.++.+|+++.+..+....++++.++--. +.+...- .|-+++-.++|++|..=
T Consensus 353 I~l~~~~~~----lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-------n~dvYyH-----RgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 353 IKLDPAFNS----LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-------NPDVYYH-----RGQMRFLLQQYEEAIAD 416 (606)
T ss_pred HhcCcccch----HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-------CCchhHh-----HHHHHHHHHHHHHHHHH
Confidence 888765421 2556778888888888888888887644322 1122222 35566678999999999
Q ss_pred HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC
Q 013549 215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 294 (441)
Q Consensus 215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG 294 (441)
|++++...+.+.-...-++-+.++++++++++..|+.+..-+ + .. |+ .++-.|+++.+|+
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF------P--~~-------~E-----vy~~fAeiLtDqq 476 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF------P--NC-------PE-----VYNLFAEILTDQQ 476 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------C--CC-------ch-----HHHHHHHHHhhHH
Confidence 999999666555555666778889999999999999987653 0 00 11 3567899999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH-HhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhc
Q 013549 295 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR-NKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD 373 (441)
Q Consensus 295 ~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~-~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~ 373 (441)
+|++|++.|.+|+.+-.+.-+ -|-.. ..|.+=|.+.. =.++ |..|+.|.++|+++- |..--...
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~-~~v~~-~plV~Ka~l~~qwk~d------~~~a~~Ll~KA~e~D-------pkce~A~~ 541 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHL-IIVNA-APLVHKALLVLQWKED------INQAENLLRKAIELD-------PKCEQAYE 541 (606)
T ss_pred hHHHHHHHHHHHHhhcccccc-ccccc-hhhhhhhHhhhchhhh------HHHHHHHHHHHHccC-------chHHHHHH
Confidence 999999999999988765211 11111 12222222221 1234 455689999998773 22223344
Q ss_pred cHHHHHHHhccHHHHHHHhhchh----hHHHHHH--HHHHHH
Q 013549 374 RTDIVALARGGYAEALSVQQNRK----DEGERMK--RWAEAA 409 (441)
Q Consensus 374 nl~~~~~~~g~yaeal~~~~~r~----~eae~~~--~~a~~~ 409 (441)
.++-+.+.||+-++|+..++... .|.|+++ ..++++
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~aeAA 583 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSLAEAA 583 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67888899999999999885533 2345544 355655
No 67
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=9.9e-09 Score=104.86 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
+-..+.|+|.-| +...-|.||+..||-..... --|..+..-.|||++|.++..|.+|+..|+-+++-.++
T Consensus 200 tfsvl~nlaqqy----~~ndm~~ealntyeiivknk------mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps 269 (840)
T KOG2003|consen 200 TFSVLFNLAQQY----EANDMTAEALNTYEIIVKNK------MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS 269 (840)
T ss_pred hHHHHHHHHHHh----hhhHHHHHHhhhhhhhhccc------ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc
Confidence 334455555554 34556888888888766543 13344556678888888888888888888888877666
Q ss_pred hhhh-hHHHHHHHHHHHHhcCCcchhHHHHHHHH
Q 013549 141 ILGV-RVAAMEALAGLYLQLGQDDTSSVVADKCL 173 (441)
Q Consensus 141 ~lg~-~~~al~~La~l~~~~G~~~~A~~l~~~~L 173 (441)
.-.. +...++|++..+.+.|+|+.|...++.|+
T Consensus 270 ink~~rikil~nigvtfiq~gqy~dainsfdh~m 303 (840)
T KOG2003|consen 270 INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCM 303 (840)
T ss_pred cchhhHHHHHhhcCeeEEecccchhhHhhHHHHH
Confidence 5332 45677777777788888888877777765
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=5.4e-08 Score=96.37 Aligned_cols=274 Identities=12% Similarity=0.074 Sum_probs=183.7
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHH--HHHHHHHHHHcCChHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGIS--LLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~--l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
.-|.++..+-.|-.-| ..+-..|-......++........+|-.+-.- -+.||..|.+.|-+.+|++-++.+
T Consensus 176 ~~p~l~kaLFey~fyh------enDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekqlqss 249 (478)
T KOG1129|consen 176 ERPTLVKALFEYLFYH------ENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSS 249 (478)
T ss_pred cChHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHH
Confidence 4577777777776655 12344444444444444433333333333222 267999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
++-.+-. .+.--|.-+|....+-..|+.++..-++.+ +.+..-+ .-...++...+++++|.++
T Consensus 250 L~q~~~~-----dTfllLskvY~ridQP~~AL~~~~~gld~f-------P~~VT~l-----~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 250 LTQFPHP-----DTFLLLSKVYQRIDQPERALLVIGEGLDSF-------PFDVTYL-----LGQARIHEAMEQQEDALQL 312 (478)
T ss_pred hhcCCch-----hHHHHHHHHHHHhccHHHHHHHHhhhhhcC-------Cchhhhh-----hhhHHHHHHHHhHHHHHHH
Confidence 8765431 133346677777776655555444333211 1111111 1123455679999999999
Q ss_pred HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC
Q 013549 215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 294 (441)
Q Consensus 215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG 294 (441)
|+++++.++.+..+.-++|.-|..-|+.+-|.-+|+|-|.+- . .+|+ -.+|+|..-..-+
T Consensus 313 Yk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG----------~-----~spe-----Lf~NigLCC~yaq 372 (478)
T KOG1129|consen 313 YKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG----------A-----QSPE-----LFCNIGLCCLYAQ 372 (478)
T ss_pred HHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc----------C-----CChH-----HHhhHHHHHHhhc
Confidence 999999766665555556666777899999999999999871 1 1122 2689999888899
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhc
Q 013549 295 NFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVD 373 (441)
Q Consensus 295 ~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~ 373 (441)
+||-+.+.|+|||...+ .|.. +.+..|||.+-..-|++.-| .|++.|.-... ++-...++
T Consensus 373 Q~D~~L~sf~RAlstat------~~~~aaDvWYNlg~vaV~iGD~nlA----------~rcfrlaL~~d---~~h~ealn 433 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTAT------QPGQAADVWYNLGFVAVTIGDFNLA----------KRCFRLALTSD---AQHGEALN 433 (478)
T ss_pred chhhhHHHHHHHHhhcc------CcchhhhhhhccceeEEeccchHHH----------HHHHHHHhccC---cchHHHHH
Confidence 99999999999998865 3554 47889999999999986543 45555543222 33457899
Q ss_pred cHHHHHHHhccHHHHHHHh
Q 013549 374 RTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 374 nl~~~~~~~g~yaeal~~~ 392 (441)
|++++....|+..+|-+..
T Consensus 434 NLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLL 452 (478)
T ss_pred hHHHHHhhcCchHHHHHHH
Confidence 9999998888887776654
No 69
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=3.8e-08 Score=100.65 Aligned_cols=238 Identities=20% Similarity=0.263 Sum_probs=165.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 112 LAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG--QDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 112 ~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G--~~~~A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
.|-+..|.++|+|+.|++.+.-- .-... ....++.+||..++.-|| +...|..|++.++.+-+ |
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~-~~kdn--k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr------y----- 488 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVF-EKKDN--KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR------Y----- 488 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHH-Hhccc--hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc------c-----
Confidence 35566788999999999887532 11110 112347788988877666 45677888887764421 1
Q ss_pred hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcc
Q 013549 190 VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 269 (441)
Q Consensus 190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg 269 (441)
+.-+....|.+....|+||.|..+|+++|.....-..+.+++|..+..+|+.+||.++|-+--.|.. .
T Consensus 489 -n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~---n-------- 556 (840)
T KOG2003|consen 489 -NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL---N-------- 556 (840)
T ss_pred -CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH---h--------
Confidence 1111223455556899999999999999995443345778999999999999999999999888842 1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh--------
Q 013549 270 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS-------- 341 (441)
Q Consensus 270 ~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA-------- 341 (441)
.+..+.-++++|..+.+-.+|+++|.|+.. +-|+.|.+ |..||.+|.+-|+-.+|
T Consensus 557 ---------n~evl~qianiye~led~aqaie~~~q~~s-----lip~dp~i---lskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 557 ---------NAEVLVQIANIYELLEDPAQAIELLMQANS-----LIPNDPAI---LSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred ---------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-----cCCCCHHH---HHHHHHHhhcccchhhhhhhhhhcc
Confidence 134578999999999999999999999864 45777765 55677999998887766
Q ss_pred -------------hhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 342 -------------SALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 342 -------------~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
-+|-+--.+.++++..++...+-.|.....---++.++...|.|..|+..+
T Consensus 620 ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 620 RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 011122345577888876545555654333223677788889998887654
No 70
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.99 E-value=3.8e-09 Score=94.40 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=69.0
Q ss_pred HHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 013549 212 ESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 291 (441)
Q Consensus 212 e~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~ 291 (441)
+.+|++++...+.. ..++|.++..+|+|++|..+|++++.+ . +. ...+++++|.++.
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~---~-----P~------------~~~a~~~lg~~~~ 69 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA---Q-----PW------------SWRAHIALAGTWM 69 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc---C-----CC------------cHHHHHHHHHHHH
Confidence 45566666643322 334566667777777777777777665 1 00 1234567777777
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
.+|+|++|+..|.+|+.+ .|.-...+.++|.+|..+|++++| ...|++|+++
T Consensus 70 ~~g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eA------i~~~~~Al~~ 121 (144)
T PRK15359 70 MLKEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLA------REAFQTAIKM 121 (144)
T ss_pred HHhhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHH------HHHHHHHHHh
Confidence 777777777777777764 345556667777777777777665 6677777665
No 71
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.98 E-value=7e-10 Score=76.97 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch
Q 013549 280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 320 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~ 320 (441)
+.+++|||.+|..+|+|++|++++++++.|+++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 45789999999999999999999999999999999999996
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.8e-07 Score=92.57 Aligned_cols=223 Identities=19% Similarity=0.191 Sum_probs=160.7
Q ss_pred hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q 013549 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG 160 (441)
Q Consensus 81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G 160 (441)
.-|+|+..|-..+. ..|++-.+...||++|+++|.-+.||-+.|--++.-.-....+.-++..|+.=|+..|
T Consensus 50 Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 50 QPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred CcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 35689999988885 5778999999999999999999999999886543322222334557778888888888
Q ss_pred CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHH--HHHHHHHcCCHHHHHHHHHhhhhccC--CchHHHHHH---H
Q 013549 161 QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAV--KGLVELAHGNLESAESFFKGLQEEEG--CTGSAALSY---G 233 (441)
Q Consensus 161 ~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al--~gl~~~~qG~y~eAe~l~~~aL~~~~--~~~~~a~~~---a 233 (441)
-+|.|+..+....+.-+- .-.++ +-.+|....++++|+..-++-.+..+ ....++.-| |
T Consensus 122 l~DRAE~~f~~L~de~ef--------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEF--------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred hhhHHHHHHHHHhcchhh--------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 888888877665421111 11111 23345677789999988888777322 223445443 4
Q ss_pred HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
..+....+++.|..+.+||+.. .+. . +.+..-||.++..+|+|..|.+.++++++
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa---~~~-----c------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~e----- 242 (389)
T COG2956 188 QQALASSDVDRARELLKKALQA---DKK-----C------------VRASIILGRVELAKGDYQKAVEALERVLE----- 242 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhh---Ccc-----c------------eehhhhhhHHHHhccchHHHHHHHHHHHH-----
Confidence 4455668899999999999987 332 1 23456799999999999888776666554
Q ss_pred hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 314 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 314 lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
.+|--+..++.-|...|..+|+.++. +...+++.+..
T Consensus 243 --Qn~~yl~evl~~L~~~Y~~lg~~~~~------~~fL~~~~~~~ 279 (389)
T COG2956 243 --QNPEYLSEVLEMLYECYAQLGKPAEG------LNFLRRAMETN 279 (389)
T ss_pred --hChHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHcc
Confidence 56666778999999999999998876 77788887765
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.97 E-value=3e-08 Score=109.45 Aligned_cols=137 Identities=8% Similarity=0.001 Sum_probs=115.4
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~ 183 (441)
-|.....+.+||.+..++|+|+||+.++++++.+.+.+.+ +..+++.+..+++++++|...+++++... +
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----a~~~~a~~L~~~~~~eeA~~~~~~~l~~~----p-- 151 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----AFILMLRGVKRQQGIEAGRAEIELYFSGG----S-- 151 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhccHHHHHHHHHHHhhcC----C--
Confidence 4556889999999999999999999999999999987653 66788899999999999999888886332 2
Q ss_pred chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549 184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVL 256 (441)
Q Consensus 184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~ 256 (441)
+.... ..+.+.+....|+|++|+.+|++++..++...++..++|.++..+|+.++|...|++|++..
T Consensus 152 -~~~~~-----~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 152 -SSARE-----ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -CCHHH-----HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 12222 23456666799999999999999999666677899999999999999999999999999873
No 74
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.94 E-value=1.5e-08 Score=90.60 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=89.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
.|.+...+|+|++|..+|++++...+....+..++|.++..+|+|++|+..|++|+++ .-.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---~p~---------------- 90 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML---DAS---------------- 90 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCC----------------
Confidence 3667789999999999999999977778888899999999999999999999999987 111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR 333 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~ 333 (441)
...+++++|.++..+|++++|++.|.+|+.+. |++|. .+.+++.+..
T Consensus 91 -~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-----p~~~~---~~~~~~~~~~ 137 (144)
T PRK15359 91 -HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-----YADAS---WSEIRQNAQI 137 (144)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChH---HHHHHHHHHH
Confidence 12467999999999999999999999999854 45544 4455555543
No 75
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=2.2e-08 Score=86.99 Aligned_cols=112 Identities=12% Similarity=-0.014 Sum_probs=88.6
Q ss_pred HHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 013549 213 SFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 292 (441)
Q Consensus 213 ~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~ 292 (441)
.+|++++...+....+...++..+..+|+|++|..++++++.+. - . ......++|.+|..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p-----~------------~~~~~~~la~~~~~ 63 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---P-----Y------------NSRYWLGLAACCQM 63 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---C-----C------------cHHHHHHHHHHHHH
Confidence 35677777555556677788888999999999999999988771 1 0 12356789999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 293 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 293 qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+|+|++|+++|++++.+ +|.....+.++|.+|..+|++++| ...|++++++.
T Consensus 64 ~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~ 115 (135)
T TIGR02552 64 LKEYEEAIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESA------LKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhc
Confidence 99999999999998886 466777788899999999998887 78888888764
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.3e-07 Score=97.85 Aligned_cols=229 Identities=13% Similarity=0.109 Sum_probs=172.3
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|++-.|.+-+..+.... |..-..|-.+|..|.++.+-.+-...|.+|.++.+... ..+...+-++.-
T Consensus 339 ~g~~~~a~~d~~~~I~l~--------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~----dvYyHRgQm~fl 406 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLD--------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP----DVYYHRGQMRFL 406 (606)
T ss_pred cCCchhhhhhHHHHHhcC--------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC----chhHhHHHHHHH
Confidence 467788888888888643 33344499999999999999999999999988877642 245667777777
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA 238 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~ 238 (441)
+++|++|..=+++|..+. |+ .+... .=++.+.+.|+++++++..|+.+....|.-+.+-.-+|+++..
T Consensus 407 L~q~e~A~aDF~Kai~L~----pe------~~~~~--iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLD----PE------NAYAY--IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD 474 (606)
T ss_pred HHHHHHHHHHHHHHhhcC----hh------hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Confidence 889999998899886443 11 11111 1134445689999999999999999776666666667999999
Q ss_pred ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA--LGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~n--Lg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
|++|++|+..|.+|+++- .. .+...++ .+.+.+ +..+.. .+++++|+.++.+|+++
T Consensus 475 qqqFd~A~k~YD~ai~LE---~~-~~~~~v~----------~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~------- 532 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELE---PR-EHLIIVN----------AAPLVHKALLVLQW-KEDINQAENLLRKAIEL------- 532 (606)
T ss_pred HHhHHHHHHHHHHHHhhc---cc-ccccccc----------chhhhhhhHhhhch-hhhHHHHHHHHHHHHcc-------
Confidence 999999999999999982 11 1222222 223333 333333 39999999999999976
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
.|.--..+..||.+--+||+.++| ..||++++.+-+.
T Consensus 533 -Dpkce~A~~tlaq~~lQ~~~i~eA------ielFEksa~lArt 569 (606)
T KOG0547|consen 533 -DPKCEQAYETLAQFELQRGKIDEA------IELFEKSAQLART 569 (606)
T ss_pred -CchHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHh
Confidence 688888999999999999999887 8999999888653
No 77
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.88 E-value=3.7e-07 Score=91.58 Aligned_cols=237 Identities=16% Similarity=0.194 Sum_probs=167.1
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHHH
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEALAGLY 156 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---~~al~~La~l~ 156 (441)
..+.+++.+-.-+++.--..-| .. -+..+..||..+...|.|+++++.||+|+.++... +++ ....-.|+.++
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~-~~--~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~-~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAG-QL--GGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN-DDAMLELQVCVSLGSLF 172 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcc-cc--cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc-CCceeeeehhhhHHHHH
Confidence 3566777777777764433322 11 23566679999999999999999999999988764 332 12344577888
Q ss_pred HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHH--HHHHHHHcCCHHHHHHHHHhhhh-----ccC-CchHH
Q 013549 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAV--KGLVELAHGNLESAESFFKGLQE-----EEG-CTGSA 228 (441)
Q Consensus 157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al--~gl~~~~qG~y~eAe~l~~~aL~-----~~~-~~~~~ 228 (441)
-++-++++|.-+..++.+|.....-..|+ ...+..++ ...++..+|+..+|.+..+++.+ +.. .+...
T Consensus 173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~----~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc 248 (518)
T KOG1941|consen 173 AQLKDYEKALFFPCKAAELVNSYGLKDWS----LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARC 248 (518)
T ss_pred HHHHhhhHHhhhhHhHHHHHHhcCcCchh----HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHH
Confidence 88899999999999999998877621221 22222222 45566789999999999999977 111 12334
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH-----HHcCCHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE-----AHMGNFGDAEEIL 303 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly-----~~qG~y~eAe~l~ 303 (441)
...+|.+|+..|+.+.|..-|++|..+...... -+| .+.++...|..+ ...|.--+|.++-
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd-----rmg---------qv~al~g~Akc~~~~r~~~k~~~Crale~n 314 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQAMGTMASLGD-----RMG---------QVEALDGAAKCLETLRLQNKICNCRALEFN 314 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh-----hHH---------HHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 567899999999999999999999998643221 333 233444444332 2333446799999
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhh
Q 013549 304 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 340 (441)
Q Consensus 304 ~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ee 340 (441)
+|+++|.+.+ |.+| .|......||.+|+.+|.-++
T Consensus 315 ~r~levA~~I-G~K~-~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 315 TRLLEVASSI-GAKL-SVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred HHHHHHHHHh-hhhH-HHHHHHHHHHHHHHhccchhH
Confidence 9999999875 6666 467788889999999997765
No 78
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.87 E-value=5.1e-07 Score=90.58 Aligned_cols=252 Identities=16% Similarity=0.157 Sum_probs=181.4
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHHH
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEALAGLY 156 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---~~al~~La~l~ 156 (441)
..+.+|+..+.+.|.-. .+-.+.-.+|-.+..++.++|+|.+++..---.++.+.+- .+. ..+.-||+.-+
T Consensus 20 ~~~~~al~~w~~~L~~l-----~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKL-----SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-EDSDFLLEAYLNLARSN 93 (518)
T ss_pred chHHHHHHHHHHHHHHH-----HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 46889999999999754 3444677788889999999999999886654444443321 111 23445566656
Q ss_pred HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh--ccCCc----hHHHH
Q 013549 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE--EEGCT----GSAAL 230 (441)
Q Consensus 157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~--~~~~~----~~~a~ 230 (441)
..+-++.+++.|..-++.+=+... ......+....+.+++..|.|+++.+.|++|++ ++... -.+..
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~-------~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRA-------GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCc-------ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 666666677776665553321111 111122333468888899999999999999998 22111 13456
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
.++.++-...+|++|.-+-.+|++|... ++....+..+ ...++..++..|+.+|+..+|.++.++|.++.
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s---------~~l~d~~~ky-r~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNS---------YGLKDWSLKY-RAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHh---------cCcCchhHHH-HHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 7899999999999999999999999532 2212233332 34568899999999999999999999999987
Q ss_pred HHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549 311 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 362 (441)
Q Consensus 311 e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~ 362 (441)
-+. -+-|.-+..+..+|.+|+..|+.|.| -+-|++|..++...+
T Consensus 237 l~~--Gdra~~arc~~~~aDIyR~~gd~e~a------f~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 237 LQH--GDRALQARCLLCFADIYRSRGDLERA------FRRYEQAMGTMASLG 280 (518)
T ss_pred HHh--CChHHHHHHHHHHHHHHHhcccHhHH------HHHHHHHHHHHhhhh
Confidence 754 35678889999999999999999987 788999999986544
No 79
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=9.8e-08 Score=89.94 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=102.7
Q ss_pred HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549 204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 283 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al 283 (441)
..++.+++...+++++...+........+|.+|..+|+|++|...|++|+.+. -. ....+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~-----------------~~~~~ 110 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GE-----------------NAELY 110 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-----------------CHHHH
Confidence 36778899999999999877788888999999999999999999999999981 11 12457
Q ss_pred HHHHHH-HHHcCC--HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 284 FALGQL-EAHMGN--FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 284 ~nLg~l-y~~qG~--y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
.++|.+ |...|+ +++|.+++++++.+ +|.-..++.+||..+..+|+|++| ...|++++++.
T Consensus 111 ~~lA~aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~A------i~~~~~aL~l~ 174 (198)
T PRK10370 111 AALATVLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQA------IELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC
Confidence 899996 578888 59999999999974 455567899999999999999987 89999998885
No 80
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.86 E-value=6.5e-08 Score=88.59 Aligned_cols=117 Identities=18% Similarity=0.247 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
....++|.++..+|+|++|..+|++++.+. .. . ++ ....+.++|.+|..+|+|++|+.+|+++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~-----~-------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLE---ED-----P-------ND--RSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hc-----c-------ch--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345677889999999999999999999882 11 0 01 1245789999999999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh-hhhHHHHHHHHHHHHHhhc-CCCCCcch
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS-SALLIQEGLYRRALEFLKA-PPLESEGV 368 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA-~~~~~Ae~ly~rAL~i~~~-~~~~~~~~ 368 (441)
+.+ +|.....+.++|.+|..+|+...+ ..+..|...|++|+++++. ...++.+.
T Consensus 99 l~~--------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 99 LEL--------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHh--------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 986 566677788899999888775443 1233457888888888753 33344433
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-06 Score=89.41 Aligned_cols=270 Identities=16% Similarity=0.101 Sum_probs=150.3
Q ss_pred ccCCCchHHHHHHHH-HHHHhhhhccChhhHHHHHHH--HHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHH
Q 013549 53 INGLNSNPVVLQMIN-YALSHARSQKSDESYSQGMLV--LEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIE 129 (441)
Q Consensus 53 ~~g~~h~~~a~~m~n-~a~~~~~~~~~~g~y~eAl~~--~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e 129 (441)
|.-|+|.+.-..-+. ||..+ .+++..|.+. +-.-+... |.--..+..+|.+++..|++++|+.
T Consensus 188 ~~~~~~~dwls~wika~Aq~~------~~~hs~a~~t~l~le~~~~l--------r~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMF------NFKHSDASQTFLMLHDNTTL--------RCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred eecCCCccHHHHHHHHHHHHH------hcccchhhhHHHHHHhhccC--------CccHHHHHHHhhhhhhhcCchHHHH
Confidence 356788887766665 66665 2334444443 32222211 1223457778889999999999999
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC-------cchh---hhhhHhH------
Q 013549 130 KLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE-------NYKT---YGAVNSR------ 193 (441)
Q Consensus 130 ~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~-------~~~~---~~~l~~~------ 193 (441)
.|++++-+.+-.+ .++.-.+.+..+-|++..-..+-...+.+....-.. .|.. ..++..-
T Consensus 254 ~Fe~~~~~dpy~i----~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 254 IFSSTLCANPDNV----EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHhhCChhhh----hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 9998876655432 233334444445555555444444443332111000 0000 0111111
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549 194 ------ANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 267 (441)
Q Consensus 194 ------a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~ 267 (441)
+..++|.+.+..||.++|.-.|+.|..-.++....-..+-..|..+|++.||.-+-.-++..+...-. .-.-
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~--~LtL 407 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR--SLTL 407 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh--hhhh
Confidence 11245666678889999999998887743333222222333344455555554444444333211100 0000
Q ss_pred ccc--cccch----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 013549 268 LGS--CNMAL----------------EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLA 329 (441)
Q Consensus 268 lg~--~~~~~----------------~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa 329 (441)
+|+ +-..| +...+.+.+.+|.+...-|+++++..+++++|.++-.. ...+.||
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~---------~LH~~Lg 478 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV---------NLHNHLG 478 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc---------HHHHHHH
Confidence 110 00000 00134577899999999999999999999999987432 3456789
Q ss_pred HHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 330 LMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 330 ~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
.++..+..+.+| ...|..||.+
T Consensus 479 d~~~A~Ne~Q~a------m~~y~~ALr~ 500 (564)
T KOG1174|consen 479 DIMRAQNEPQKA------MEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhHHHH------HHHHHHHHhc
Confidence 999999988877 6777777655
No 82
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.76 E-value=8.3e-06 Score=89.63 Aligned_cols=295 Identities=16% Similarity=0.153 Sum_probs=183.7
Q ss_pred CCccccCCCchHH-HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHH
Q 013549 49 NGNRINGLNSNPV-VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEA 127 (441)
Q Consensus 49 ~~~~~~g~~h~~~-a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA 127 (441)
-|-+..+..-+++ +.+|...|... + ..|++.+|+.++..+.. ..|.....+..||.+|..+|+-.++
T Consensus 125 ~~~~~r~~~~l~~~l~~ll~eAN~l--f--arg~~eeA~~i~~EvIk--------qdp~~~~ay~tL~~IyEqrGd~eK~ 192 (895)
T KOG2076|consen 125 RGRRSRGKSKLAPELRQLLGEANNL--F--ARGDLEEAEEILMEVIK--------QDPRNPIAYYTLGEIYEQRGDIEKA 192 (895)
T ss_pred cCCCCCcccccCHHHHHHHHHHHHH--H--HhCCHHHHHHHHHHHHH--------hCccchhhHHHHHHHHHHcccHHHH
Confidence 3444455555555 77888888776 4 35999999999999985 4556677899999999999999888
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC
Q 013549 128 IEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN 207 (441)
Q Consensus 128 ~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~ 207 (441)
.-..--|-.+.+... .-|..++-+-.++|.+.+|.-+|.++++.- |..| .-+..+ ...|...|+
T Consensus 193 l~~~llAAHL~p~d~----e~W~~ladls~~~~~i~qA~~cy~rAI~~~----p~n~---~~~~er-----s~L~~~~G~ 256 (895)
T KOG2076|consen 193 LNFWLLAAHLNPKDY----ELWKRLADLSEQLGNINQARYCYSRAIQAN----PSNW---ELIYER-----SSLYQKTGD 256 (895)
T ss_pred HHHHHHHHhcCCCCh----HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----Ccch---HHHHHH-----HHHHHHhCh
Confidence 877666654444332 356667777778888888888888876332 1111 111111 112223344
Q ss_pred H---------------------------------------HHHHHHHHhhhhcc--CCchHHHHHHHHHHHHccChHHHH
Q 013549 208 L---------------------------------------ESAESFFKGLQEEE--GCTGSAALSYGEYLHATRNFLLAK 246 (441)
Q Consensus 208 y---------------------------------------~eAe~l~~~aL~~~--~~~~~~a~~~a~~~~~qG~y~eA~ 246 (441)
+ +.|.+.++.++..+ .........+++++.....|+.|.
T Consensus 257 ~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~ 336 (895)
T KOG2076|consen 257 LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKAL 336 (895)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhh
Confidence 4 44444444444411 111223345666776666677666
Q ss_pred HHHHHHHHHHHhhcccC-----------------CCCC---------ccccccch-------------------hHHHHH
Q 013549 247 KFYQKVIEVLAEQKDFS-----------------DMNT---------LGSCNMAL-------------------EEVALA 281 (441)
Q Consensus 247 ~ly~rAL~i~~~~~~~~-----------------~~~~---------lg~~~~~~-------------------~~~~~~ 281 (441)
..-..--.+ +..+..+ .+.. +..|..|. ..-...
T Consensus 337 ~~i~~~~~r-~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~d 415 (895)
T KOG2076|consen 337 MKIVDDRNR-ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVD 415 (895)
T ss_pred HHHHHHhcc-ccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHH
Confidence 554443331 0000000 0000 00011110 001122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH--HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV--GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v--a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
-+.+++.+|..-|+|++|.++|.+... ||.. +.+..++|..|..+|.|++| ...|.++|..
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~---------~~~~~~~~vw~~~a~c~~~l~e~e~A------~e~y~kvl~~-- 478 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITN---------REGYQNAFVWYKLARCYMELGEYEEA------IEFYEKVLIL-- 478 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhc---------CccccchhhhHHHHHHHHHHhhHHHH------HHHHHHHHhc--
Confidence 367899999999999999999998763 3333 55888999999999999987 7889998765
Q ss_pred cCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 360 APPLESEGVETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 360 ~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
.|+|-++..+ |+.++..+|+.++|+..-.+
T Consensus 479 --~p~~~D~Ri~---Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 479 --APDNLDARIT---LASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred --CCCchhhhhh---HHHHHHhcCCHHHHHHHHhc
Confidence 3666664433 56788999999999886533
No 83
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.76 E-value=3.1e-07 Score=84.09 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCC---chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549 196 AVKGLVELAHGNLESAESFFKGLQEEEGC---TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 272 (441)
Q Consensus 196 al~gl~~~~qG~y~eAe~l~~~aL~~~~~---~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~ 272 (441)
...|.++...|+|++|..+|++++...+. ...+..++|.++...|+|++|+.+|++|+.+. .. .
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-----~----- 105 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PK-----Q----- 105 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc-----c-----
Confidence 35678888999999999999999983222 24567888999999999999999999999982 11 1
Q ss_pred cchhHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 013549 273 MALEEVALAATFALGQLEAH-------MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCL 328 (441)
Q Consensus 273 ~~~~~~~~~al~nLg~ly~~-------qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nL 328 (441)
..++.++|.+|.. +|++++|+..|.+|++++++.+..++..+-.+++.+
T Consensus 106 -------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 161 (172)
T PRK02603 106 -------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL 161 (172)
T ss_pred -------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Confidence 1234455655555 567999999999999999999998888755554433
No 84
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.74 E-value=4.6e-07 Score=80.70 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=95.5
Q ss_pred HcCCHHHHHHHHHhhhhccCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHH
Q 013549 204 AHGNLESAESFFKGLQEEEGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL 280 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~ 280 (441)
..|+++.+...+++.+...+.+ ..+.+.+|.++..+|+|++|...|+++++- ... +. +..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d----~~----------l~~ 85 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN---APD----PE----------LKP 85 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCC----HH----------HHH
Confidence 6899999999999999865555 344567899999999999999999999885 211 01 122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHH
Q 013549 281 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRAL 355 (441)
Q Consensus 281 ~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL 355 (441)
.+...||.++..+|+|++|...+++ .++.+.......-+|.+|..+|++++| ...|++||
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~~~~~~~~Gdi~~~~g~~~~A------~~~y~~Al 145 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQ---------IPDEAFKALAAELLGDIYLAQGDYDEA------RAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcchHHHHHHHHHHHHHHCCCHHHH------HHHHHHhC
Confidence 3456899999999999999999855 345566677788899999999999997 88898885
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=1.5e-06 Score=81.86 Aligned_cols=103 Identities=12% Similarity=0.131 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH-HHccC--hHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549 196 AVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL-HATRN--FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 272 (441)
Q Consensus 196 al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~-~~qG~--y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~ 272 (441)
..+|.++...|+|++|...|++++...+....+..++|.++ ...|+ +++|..++++++.+ .-
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~---dP------------ 141 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL---DA------------ 141 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---CC------------
Confidence 35688889999999999999999997777888889999864 67788 59999999999998 11
Q ss_pred cchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549 273 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 322 (441)
Q Consensus 273 ~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va 322 (441)
. ...++.+||..+..+|+|++|+.+|+++|++. +++-+...
T Consensus 142 ---~--~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~----~~~~~r~~ 182 (198)
T PRK10370 142 ---N--EVTALMLLASDAFMQADYAQAIELWQKVLDLN----SPRVNRTQ 182 (198)
T ss_pred ---C--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCccHHH
Confidence 1 13468999999999999999999999998764 34444443
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.9e-06 Score=90.94 Aligned_cols=240 Identities=11% Similarity=0.135 Sum_probs=152.7
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHH-HH-HHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVA-AM-EALAGL 155 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~-al-~~La~l 155 (441)
.+|+|++|+..-.+.|.+. ++.++ .+..--..+...++|++|+.+.+.- .+..+. .. +.-+.+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-----pdd~~---a~~cKvValIq~~ky~~ALk~ikk~-------~~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-----PDDED---AIRCKVVALIQLDKYEDALKLIKKN-------GALLVINSFFFEKAYC 88 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-----CCcHh---hHhhhHhhhhhhhHHHHHHHHHHhc-------chhhhcchhhHHHHHH
Confidence 5689999999999999755 34333 3444445677899999999655542 111111 11 244677
Q ss_pred HHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCch--HHHHHH-
Q 013549 156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTG--SAALSY- 232 (441)
Q Consensus 156 ~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~--~~a~~~- 232 (441)
.+++++.++|...++-+ .... ....-+.+-+.+.+|+|++|...|+..+..+.... ..-.|+
T Consensus 89 ~Yrlnk~Dealk~~~~~----~~~~-----------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGL----DRLD-----------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred HHHcccHHHHHHHHhcc----cccc-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 88889888876655411 1111 11122445556689999999999999877322221 111121
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
+..-..++ - ..+++.+ . |+ -+-..++|.|..+...|+|++|++++++|+.|..+
T Consensus 154 a~~a~l~~-----~--~~q~v~~-----------v-------~e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e 207 (652)
T KOG2376|consen 154 AVAAALQV-----Q--LLQSVPE-----------V-------PE-DSYELLYNTACILIENGKYNQAIELLEKALRICRE 207 (652)
T ss_pred HHHHhhhH-----H--HHHhccC-----------C-------Cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 11111111 0 1111111 1 11 02245789999999999999999999999999999
Q ss_pred hhCCCCc-------hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHh
Q 013549 313 LFGSHHP-------KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 382 (441)
Q Consensus 313 ~lG~~HP-------~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~ 382 (441)
.|-.+.- .+..+-.-||.++..+|+-+|| ...|...+ +....|.|..+...||+-.+-..+
T Consensus 208 ~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea------~~iy~~~i---~~~~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 208 KLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA------SSIYVDII---KRNPADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred hhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH------HHHHHHHH---HhcCCCchHHHHHhcchhhhcccc
Confidence 8754433 3777888899999999999987 55676553 334578888898999987765444
No 87
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=9e-07 Score=99.27 Aligned_cols=241 Identities=10% Similarity=0.027 Sum_probs=149.3
Q ss_pred CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
++--|+.......+...+ +.++++++|+++.+.++. .+|.....+.-+|.++.+++++++|.-. ++
T Consensus 24 ~~~~p~n~~a~~~Li~~~----~~~~~~deai~i~~~~l~--------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~ 89 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAY----KSENLTDEAKDICEEHLK--------EHKKSISALYISGILSLSRRPLNDSNLL--NL 89 (906)
T ss_pred ccCCcchHHHHHHHHHHH----HhcCCHHHHHHHHHHHHH--------hCCcceehHHHHHHHHHhhcchhhhhhh--hh
Confidence 344444445555555554 235677788888777774 4666667777777777778877777655 44
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
+++.... .++...+.+++..++..... ++.--++.+|...|++++|...
T Consensus 90 l~~~~~~------------------~~~~~ve~~~~~i~~~~~~k-------------~Al~~LA~~Ydk~g~~~ka~~~ 138 (906)
T PRK14720 90 IDSFSQN------------------LKWAIVEHICDKILLYGENK-------------LALRTLAEAYAKLNENKKLKGV 138 (906)
T ss_pred hhhcccc------------------cchhHHHHHHHHHHhhhhhh-------------HHHHHHHHHHHHcCChHHHHHH
Confidence 3333221 12222222232222211111 1111246677789999999999
Q ss_pred HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC--ccccccchhHHHH------------
Q 013549 215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT--LGSCNMALEEVAL------------ 280 (441)
Q Consensus 215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~--lg~~~~~~~~~~~------------ 280 (441)
|+++|.-.+..+.++++||-.|..+ ++++|+.||.+|+..+-..+....-.. ..-+...|+.+..
T Consensus 139 yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 139 WERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 9999996677788899999999988 999999999999988654433110000 0001111221111
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHH
Q 013549 281 ------AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA 354 (441)
Q Consensus 281 ------~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rA 354 (441)
..+.-|=.-|....+|+++.+.++++|++..+ +++ ....|+..|. ++|.. .++++..
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~----n~~----a~~~l~~~y~--~kY~~-------~~~~ee~ 280 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK----NNK----AREELIRFYK--EKYKD-------HSLLEDY 280 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc----chh----hHHHHHHHHH--HHccC-------cchHHHH
Confidence 11223337888999999999999999998765 332 3788888887 67765 5666666
Q ss_pred HHHh
Q 013549 355 LEFL 358 (441)
Q Consensus 355 L~i~ 358 (441)
|.+-
T Consensus 281 l~~s 284 (906)
T PRK14720 281 LKMS 284 (906)
T ss_pred HHHh
Confidence 6664
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-06 Score=88.77 Aligned_cols=207 Identities=16% Similarity=0.171 Sum_probs=136.9
Q ss_pred chHHHHHHHHHHHHhhhhc------------------------------cChhhHHHHHHHHHHhhhccccCCCCCchhH
Q 013549 58 SNPVVLQMINYALSHARSQ------------------------------KSDESYSQGMLVLEQCLSTQPSDGQLAESWR 107 (441)
Q Consensus 58 h~~~a~~m~n~a~~~~~~~------------------------------~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~ 107 (441)
-|.+..+|.-||+++++.. +..-+|..|+.+-+++....++ .||.
T Consensus 262 dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r----~~~a- 336 (564)
T KOG1174|consen 262 NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR----NHEA- 336 (564)
T ss_pred ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc----cchH-
Confidence 4778889999999885532 0112344444444444432211 2222
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
|.-=|.++...|+..+|+-.|+.|+.+++.- ...+..|...|..+|+.-+|...++.....+.+.-
T Consensus 337 ---lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r----L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA------- 402 (564)
T KOG1174|consen 337 ---LILKGRLLIALERHTQAVIAFRTAQMLAPYR----LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA------- 402 (564)
T ss_pred ---HHhccHHHHhccchHHHHHHHHHHHhcchhh----HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch-------
Confidence 4445666666777777777776666655432 23566777777777877777777766655443321
Q ss_pred hhhHhHHHHHHH-HHHHH-cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549 188 GAVNSRANAVKG-LVELA-HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 265 (441)
Q Consensus 188 ~~l~~~a~al~g-l~~~~-qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~ 265 (441)
.++ .+.| .+..- ----++|.++++++|..+|....+.+-+|+++..-|+++.++.+.+++|.++. .
T Consensus 403 ~~L-----tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~---D---- 470 (564)
T KOG1174|consen 403 RSL-----TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP---D---- 470 (564)
T ss_pred hhh-----hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc---c----
Confidence 111 1233 22221 11238899999999997776767888899999999999999999999999841 1
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
|+ -.+-||+++..+..|.+|.++|..||.+
T Consensus 471 -----~~---------LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 471 -----VN---------LHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred -----cH---------HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 11 1257999999999999999999999975
No 89
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.68 E-value=4.9e-07 Score=78.64 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
+.+..|.++..+|+.++|+++|++|++. ... + .....++.+||..|..+|++++|+.++++++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~-------~-------~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA---GLS-------G-------ADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC-------c-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567888999999999999999999985 111 1 1133578899999999999999999999987
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
.-+ |+.+-....-..+|.+...+|++++|
T Consensus 66 ~~~-----p~~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 66 EEF-----PDDELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred HHC-----CCccccHHHHHHHHHHHHHCCCHHHH
Confidence 421 22122555556688999999999988
No 90
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.64 E-value=4.2e-07 Score=78.89 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=80.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..+..+..+|+|++|..+|++++...+..+.+..++|.++..+|+|++|..+|++++.+. . .
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p-----~---------- 83 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---P-----D---------- 83 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C-----C----------
Confidence 456777899999999999999999766677788899999999999999999999999871 1 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
....+.++|.+|..+|++++|.+.|++++...
T Consensus 84 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 84 --DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 12356899999999999999999999999864
No 91
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.61 E-value=8.5e-07 Score=74.38 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.+..+.|..+..+|+|++|...|++++... .+ ++ . ...+...+|.++...|+|++|..+|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~---~~-~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PK---ST-Y----------APNAHYWLGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CC---cc-c----------cHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345677888899999999999999998761 11 11 1 1235678999999999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+.. .|+||.+..++.++|.+|..+|++++| ...|+++++..
T Consensus 66 ~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A------~~~~~~~~~~~ 106 (119)
T TIGR02795 66 VKK-----YPKSPKAPDALLKLGMSLQELGDKEKA------KATLQQVIKRY 106 (119)
T ss_pred HHH-----CCCCCcccHHHHHHHHHHHHhCChHHH------HHHHHHHHHHC
Confidence 965 378888888999999999999999887 88899887773
No 92
>PLN02789 farnesyltranstransferase
Probab=98.58 E-value=2.8e-05 Score=78.75 Aligned_cols=206 Identities=16% Similarity=0.047 Sum_probs=146.7
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG-~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~ 156 (441)
..+++.+|+.++++++.+ +|.-.++.+..+.++...| ++.+|+..+.+++...+... .+++..+.+.
T Consensus 49 ~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny----qaW~~R~~~l 116 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY----QIWHHRRWLA 116 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch----HHhHHHHHHH
Confidence 567899999999999974 5666788999999999999 68999999999987766542 2577777777
Q ss_pred HhcCCc--chhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHH
Q 013549 157 LQLGQD--DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGE 234 (441)
Q Consensus 157 ~~~G~~--~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~ 234 (441)
..+|++ .++..++++++++-. .+.... .-.+.+....|+|++|..++.++|...+....+-+..+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-------kNy~AW-----~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~ 184 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-------KNYHAW-----SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYF 184 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-------ccHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHH
Confidence 777764 455666666653321 111223 234555667899999999999999966555556566666
Q ss_pred HHHHc---cCh----HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH----cCCHHHHHHHH
Q 013549 235 YLHAT---RNF----LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNFGDAEEIL 303 (441)
Q Consensus 235 ~~~~q---G~y----~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~----qG~y~eAe~l~ 303 (441)
++... |++ ++++.+..++|.+ .- . | -.+.+.++.++.. .+++.+|.+.+
T Consensus 185 vl~~~~~l~~~~~~~e~el~y~~~aI~~---~P-----~-----N-------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 185 VITRSPLLGGLEAMRDSELKYTIDAILA---NP-----R-----N-------ESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHhccccccccccHHHHHHHHHHHHHh---CC-----C-----C-------cCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 66655 444 4677777888877 11 1 1 1246788888888 45677788777
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549 304 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 335 (441)
Q Consensus 304 ~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q 335 (441)
.+++. ..|...-.|.-|+.+|...
T Consensus 245 ~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 245 LEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 77665 3577777888899999853
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=4.4e-06 Score=88.09 Aligned_cols=199 Identities=15% Similarity=0.093 Sum_probs=149.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhH
Q 013549 112 LAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVN 191 (441)
Q Consensus 112 ~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~ 191 (441)
...|..+.+.|+..+|.-.|+.++.-.+.+. .+|--|+-.+-+-++...|..-+++|+++- +.+.+.+.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha----eAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P~NleaLm 357 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA----EAWQKLGITQAENENEQNAISALRRCLELD-------PTNLEALM 357 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH----HHHHHhhhHhhhccchHHHHHHHHHHHhcC-------CccHHHHH
Confidence 4568888999999999999999987776653 477778888888888888888888887442 11112221
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----------------------------------------ccC--CchHH
Q 013549 192 SRANAVKGLVELAHGNLESAESFFKGLQE-----------------------------------------EEG--CTGSA 228 (441)
Q Consensus 192 ~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----------------------------------------~~~--~~~~~ 228 (441)
. +++-|..+|--.+|..++.+-+. ..+ ..+.+
T Consensus 358 a-----LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 358 A-----LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred H-----HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 1 13334456666666666665544 111 22344
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
-..+|-+|+.-|+|++|.++|+.||.. + |.. -..-|-||.++..-.+..||..-|.|||+
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v----~--------------Pnd--~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQV----K--------------PND--YLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhc----C--------------Cch--HHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 456788999999999999999999987 1 110 12347899999999999999999999999
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
++ |....+-.|||..|..+|-|+|| .+.|-.||.+.+.
T Consensus 493 Lq--------P~yVR~RyNlgIS~mNlG~ykEA------~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 493 LQ--------PGYVRVRYNLGISCMNLGAYKEA------VKHLLEALSMQRK 530 (579)
T ss_pred cC--------CCeeeeehhhhhhhhhhhhHHHH------HHHHHHHHHhhhc
Confidence 86 88999999999999999999887 8899999999854
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=1.9e-06 Score=83.30 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=123.2
Q ss_pred HHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh
Q 013549 66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR 145 (441)
Q Consensus 66 ~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~ 145 (441)
.+++..+. ..|+=+++..+..+++- .||.-...++..|......|+|.+|+..++++..+.+.-
T Consensus 70 ~~~a~a~~----~~G~a~~~l~~~~~~~~--------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---- 133 (257)
T COG5010 70 AKLATALY----LRGDADSSLAVLQKSAI--------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD---- 133 (257)
T ss_pred HHHHHHHH----hcccccchHHHHhhhhc--------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC----
Confidence 55666552 23555566666666552 466666677779999999999999999999998887643
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCc
Q 013549 146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCT 225 (441)
Q Consensus 146 ~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~ 225 (441)
...++.++..|.+.|+.++|..-|.+++++..+... ..+++|..+.-+|+++.|+.++.++....+..
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~------------~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS------------IANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch------------hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 247788999999999999999999999988765542 12345777778999999999999998866666
Q ss_pred hHHHHHHHHHHHHccChHHHHHHHH
Q 013549 226 GSAALSYGEYLHATRNFLLAKKFYQ 250 (441)
Q Consensus 226 ~~~a~~~a~~~~~qG~y~eA~~ly~ 250 (441)
..+..|++.+...+|++.+|+..-.
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhcc
Confidence 6788899999999999999997543
No 95
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=7.7e-06 Score=81.25 Aligned_cols=205 Identities=15% Similarity=0.143 Sum_probs=143.9
Q ss_pred HHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHH
Q 013549 68 YALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVA 147 (441)
Q Consensus 68 ~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~ 147 (441)
++.++ | +.|.-|+||.+.+--+. .... .-.....++..||.-|...|=|+.|+.+|..-.+..+- ...
T Consensus 75 LGnLf-R---sRGEvDRAIRiHQ~L~~-spdl---T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef----a~~ 142 (389)
T COG2956 75 LGNLF-R---SRGEVDRAIRIHQTLLE-SPDL---TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF----AEG 142 (389)
T ss_pred HHHHH-H---hcchHHHHHHHHHHHhc-CCCC---chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh----hHH
Confidence 45554 3 56899999999865553 2221 22346788999999999999999999999986543221 123
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchH
Q 013549 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGS 227 (441)
Q Consensus 148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~ 227 (441)
++-.|..+|.+.-++.+|...+.+...+-.... . ..+... ..=+...+...-+.+.|..++.+++...+.-..
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~--~eIAqf-yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR 215 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----R--VEIAQF-YCELAQQALASSDVDRARELLKKALQADKKCVR 215 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----h--hHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence 677788999888888777776666543322211 1 001000 001233334577899999999999995443345
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
+...+|.++..+|+|..|.+-++++++- . +.+++ -.+.-|-..|..+|+.++.+..+.++.
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQ---n-----~~yl~-----------evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERVLEQ---N-----PEYLS-----------EVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHHh---C-----hHHHH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6677899999999999999999998876 2 22332 245678999999999999999999998
Q ss_pred HHH
Q 013549 308 TKT 310 (441)
Q Consensus 308 ~i~ 310 (441)
+.+
T Consensus 277 ~~~ 279 (389)
T COG2956 277 ETN 279 (389)
T ss_pred Hcc
Confidence 765
No 96
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.53 E-value=2.5e-06 Score=71.52 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=81.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~ 274 (441)
.+..+..+|+|++|+..|++++...+.. ..+...+|.++...|+|++|..+|++++... .+ ++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~---~~~------- 74 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PK---SPK------- 74 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CC---CCc-------
Confidence 4666778999999999999999844332 4566778999999999999999999999862 11 111
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHH
Q 013549 275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV 323 (441)
Q Consensus 275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~ 323 (441)
...++.++|.+|..+|++++|+.+|.+++.. .|+++.+-.
T Consensus 75 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~ 114 (119)
T TIGR02795 75 ----APDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKL 114 (119)
T ss_pred ----ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHH
Confidence 1235789999999999999999999999987 355655433
No 97
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.53 E-value=2.3e-06 Score=76.12 Aligned_cols=122 Identities=21% Similarity=0.236 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.++++.+...+++...-. ++.+........+|..+..+|+|++|++.|+.++...+.. .....+...|+.+++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~ 97 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRLARILLQ 97 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHH
Confidence 567777777777777533 5556678888999999999999999999999987654221 1122234445666666
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQ 219 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL 219 (441)
+|++++|...++. ..+ ......+..+.|.++..+|++++|...|+++|
T Consensus 98 ~~~~d~Al~~L~~-------~~~------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQ-------IPD------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHh-------ccC------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6666555544322 111 01112223345555555666666666555553
No 98
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.4e-06 Score=87.11 Aligned_cols=274 Identities=16% Similarity=0.086 Sum_probs=183.2
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
+-+|.+|+..|..|.... + +-+.-+.|-+.+|...|+|++|.-.+++.+.+...-.- .--....++.+
T Consensus 62 ~k~Y~nal~~yt~Ai~~~-----p---d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k----~~~r~~~c~~a 129 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMC-----P---DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK----GQLREGQCHLA 129 (486)
T ss_pred HhhHHHHHHHHHHHHHhC-----c---cchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc----cccchhhhhhh
Confidence 447999999999999744 3 33888999999999999999999999988766543210 11112233333
Q ss_pred cCCcchhHHHHH--------HHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHH
Q 013549 159 LGQDDTSSVVAD--------KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAAL 230 (441)
Q Consensus 159 ~G~~~~A~~l~~--------~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~ 230 (441)
++.-.+|+..++ +++..+++.-+.+.. +.-..+++.+..-.+..+|+|++|...--..++.......+..
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~--~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~ 207 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSR--EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY 207 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccC--CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence 343333333322 122222222222211 1223455556666667899999999988888885444444444
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
--+.+++..++.+.|...|+++|..- +++...+...+-|.. +-..-.=|+-...+|+|.+|.+.|+.||.|-
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ld------pdh~~sk~~~~~~k~--le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLD------PDHQKSKSASMMPKK--LEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccC------hhhhhHHhHhhhHHH--HHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 45778888999999999999999772 122222222222221 2234466888899999999999999999975
Q ss_pred HHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHH
Q 013549 311 EELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 389 (441)
Q Consensus 311 e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal 389 (441)
|+|-. .+..|.|.|.++.+.|+.++| ..-...|++|- +.....+.-.+.+++..+.|.+|.
T Consensus 280 -----P~n~~~naklY~nra~v~~rLgrl~ea------isdc~~Al~iD-------~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 280 -----PSNKKTNAKLYGNRALVNIRLGRLREA------ISDCNEALKID-------SSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred -----ccccchhHHHHHHhHhhhcccCCchhh------hhhhhhhhhcC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44544 567899999999999999887 77888888873 234456666778888888888876
Q ss_pred HHh
Q 013549 390 SVQ 392 (441)
Q Consensus 390 ~~~ 392 (441)
.-+
T Consensus 342 ~d~ 344 (486)
T KOG0550|consen 342 EDY 344 (486)
T ss_pred HHH
Confidence 643
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.9e-05 Score=82.75 Aligned_cols=196 Identities=13% Similarity=0.143 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~ 186 (441)
.+.-.-++|+..+..-++..|+.+|..++.+. ...+ -+++.+.+|...|.+.+....++++++--.. .+..
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it----~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre----~rad 293 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDIT----YLNNIAAVYLERGKYAECIELCEKAVEVGRE----LRAD 293 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhH----HHHHHHHHHHhccHHHHhhcchHHHHHHhHH----HHHH
Confidence 56778899999999999999999999999887 3332 4577888999999998877777765432111 1111
Q ss_pred hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHH---------------------------HHHHHHHc
Q 013549 187 YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALS---------------------------YGEYLHAT 239 (441)
Q Consensus 187 ~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~---------------------------~a~~~~~q 239 (441)
..+..++.+..|.+|...|+|+.|..+|+++|..+.. ++.... =|+-+...
T Consensus 294 -~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 294 -YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred -HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc
Confidence 1223344455677888899999999999999984332 111111 13344455
Q ss_pred cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549 240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 319 (441)
Q Consensus 240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP 319 (441)
|+|.+|+..|-+||.. . |+ ....++|.|..|...|.|.+|..-.+.+++. ||
T Consensus 372 gdy~~Av~~YteAIkr-----~-------------P~--Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p 423 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKR-----D-------------PE--DARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DP 423 (539)
T ss_pred cCHHHHHHHHHHHHhc-----C-------------Cc--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------Cc
Confidence 5555555555554432 0 00 0123455555555555555555555555544 55
Q ss_pred hHHHHHHHHHHHHHHhhchhhh
Q 013549 320 KVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 320 ~va~~l~nLa~ly~~qG~~eeA 341 (441)
.....+..=|.++..+.+|++|
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554445555554444443
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=6.7e-05 Score=81.89 Aligned_cols=279 Identities=15% Similarity=0.184 Sum_probs=160.9
Q ss_pred hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q 013549 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG 160 (441)
Q Consensus 81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G 160 (441)
-..||+.+|.|+-. +.-|-.+|.++|.|++|.++-+.-=.| ++ ..++++-++.....+
T Consensus 815 MlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HL---r~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAETKDRI---HL---RNTYYNYAKYLEARR 872 (1416)
T ss_pred hHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhhccce---eh---hhhHHHHHHHHHhhc
Confidence 34577777777763 334556888999999998776532111 01 135666666666667
Q ss_pred CcchhHHHHHHHH----HHHHhcCCCcchhhhhhHhHHH-----HH---HHHHHHHcCCHHHHHHHHHhhhh--------
Q 013549 161 QDDTSSVVADKCL----QLCEKHKPENYKTYGAVNSRAN-----AV---KGLVELAHGNLESAESFFKGLQE-------- 220 (441)
Q Consensus 161 ~~~~A~~l~~~~L----~i~~~~~~~~~~~~~~l~~~a~-----al---~gl~~~~qG~y~eAe~l~~~aL~-------- 220 (441)
+...|+.+|+++- ++..-... +...+..+.+ .| -|-+.-.+|+.|-|..+|..|-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e----~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~ 948 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKE----YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIK 948 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHh----ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeE
Confidence 7777777777652 11111110 0011111111 01 13333479999999999998877
Q ss_pred ---cc--------CCchHH--HHHHHHHHHHccChHHHHHHHHHHHHH----HHhhcccCCCCCccccccchhH-HHHHH
Q 013549 221 ---EE--------GCTGSA--ALSYGEYLHATRNFLLAKKFYQKVIEV----LAEQKDFSDMNTLGSCNMALEE-VALAA 282 (441)
Q Consensus 221 ---~~--------~~~~~~--a~~~a~~~~~qG~y~eA~~ly~rAL~i----~~~~~~~~~~~~lg~~~~~~~~-~~~~a 282 (441)
+. ...++. .+-+|.-|.++|++.+|..+|-||-+. +. -|. +.+- +. .+++.
T Consensus 949 C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl-cKE----nd~~------d~L~nlal 1017 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL-CKE----NDMK------DRLANLAL 1017 (1416)
T ss_pred eeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHh----cCHH------HHHHHHHh
Confidence 00 111222 244588899999999999999998643 11 111 0110 00 01111
Q ss_pred ------HHHHHHHHHHcC-CHHHHHHHHHHH------------------HHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549 283 ------TFALGQLEAHMG-NFGDAEEILTRT------------------LTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337 (441)
Q Consensus 283 ------l~nLg~ly~~qG-~y~eAe~l~~rA------------------L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~ 337 (441)
+..-|.-|...| .++.|..+|.|| |++--+-|.+.. =...++.-|..+..-.+
T Consensus 1018 ~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s--Dp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1018 MSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS--DPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred hcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC--CHHHHHHHHHHHHhHHH
Confidence 111222333444 455555555443 444333333322 12356667789999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCCC---------------CCcc---hHhhhccHHHHHHHhccHHHHHHHhhchhhH
Q 013549 338 QEHSSALLIQEGLYRRALEFLKAPPL---------------ESEG---VETKVDRTDIVALARGGYAEALSVQQNRKDE 398 (441)
Q Consensus 338 ~eeA~~~~~Ae~ly~rAL~i~~~~~~---------------~~~~---~~~~l~nl~~~~~~~g~yaeal~~~~~r~~e 398 (441)
|++|..+.-+-.-|++||.|.+-.+. +.|+ -...|..++.+++.||.|.-|...+.+..+.
T Consensus 1096 yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 99999999999999999999753221 1121 1234557889999999999999988664433
No 101
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.50 E-value=7.2e-07 Score=71.84 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=63.4
Q ss_pred HcCCHHHHHHHHHhhhhccCC--chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH
Q 013549 204 AHGNLESAESFFKGLQEEEGC--TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA 281 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~--~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~ 281 (441)
.+|+|++|+.+|++++...+. .......+|.+|..+|+|++|.+++++ +.+- .. ...
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---~~-----------------~~~ 59 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---PS-----------------NPD 59 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---HC-----------------HHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---CC-----------------CHH
Confidence 379999999999999995442 334556679999999999999999999 4441 11 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
...-+|.++..+|+|++|++.|++|
T Consensus 60 ~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 60 IHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 4456799999999999999999986
No 102
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.48 E-value=1.9e-06 Score=88.44 Aligned_cols=103 Identities=11% Similarity=0.065 Sum_probs=86.0
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHH
Q 013549 199 GLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~ 278 (441)
|...+.+|+|++|+.+|++++...+....+..++|.+|..+|+|++|+..+++||.+. ..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~----------------- 68 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD---PS----------------- 68 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC-----------------
Confidence 3444689999999999999999777777788889999999999999999999999981 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT 326 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~ 326 (441)
...++.++|.+|..+|+|++|+..|++++.+ .+++|.+...+.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~ 111 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL-----APGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Confidence 1245789999999999999999999999975 477887665543
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=3.9e-06 Score=81.11 Aligned_cols=116 Identities=20% Similarity=0.181 Sum_probs=96.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
.|......|+|.+|+..|+++....+....+...+|-+|-..|++++|..-|.+|++.. -. ++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~---~~---~p----------- 168 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA---PN---EP----------- 168 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc---cC---Cc-----------
Confidence 46666799999999999999999777677777888999999999999999999999983 11 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
..++|||..|.-.|+++.|+.++.++-. .++..+ .+..||+.+...||++++|
T Consensus 169 ---~~~nNlgms~~L~gd~~~A~~lll~a~l-----~~~ad~---~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 169 ---SIANNLGMSLLLRGDLEDAETLLLPAYL-----SPAADS---RVRQNLALVVGLQGDFREA 221 (257)
T ss_pred ---hhhhhHHHHHHHcCCHHHHHHHHHHHHh-----CCCCch---HHHHHHHHHHhhcCChHHH
Confidence 2479999999999999999999988743 333343 4568999999999999887
No 104
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.48 E-value=2.1e-06 Score=66.19 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=76.3
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
..++|.++..+|++++|+..+++++.+. .. . ..+..++|.+|..+|++++|..+|++++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~-----~------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---PD-----N------------ADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---Cc-----c------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888889999999999999998871 11 0 13567999999999999999999999988
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+ .+.++ .++.++|.+|..+|++++| ...+.+++++
T Consensus 63 ~-----~~~~~---~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~ 97 (100)
T cd00189 63 L-----DPDNA---KAYYNLGLAYYKLGKYEEA------LEAYEKALEL 97 (100)
T ss_pred C-----CCcch---hHHHHHHHHHHHHHhHHHH------HHHHHHHHcc
Confidence 5 34444 7788999999999998887 7778777654
No 105
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.47 E-value=1.7e-06 Score=66.67 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=76.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
.+..+..+|++++|...|++++...+....+...+|.++..+|++++|..+|++++.+. .. .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~-----~---------- 67 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PD-----N---------- 67 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---Cc-----c----------
Confidence 45666789999999999999999655555667788999999999999999999999872 11 0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
..+...+|.++..+|++++|..++.+++.+
T Consensus 68 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 68 --AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred --hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 134689999999999999999999998864
No 106
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.43 E-value=0.0001 Score=80.17 Aligned_cols=279 Identities=16% Similarity=0.036 Sum_probs=171.8
Q ss_pred HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHhhhh
Q 013549 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN----YVEAIEKLQKVENFKNS 140 (441)
Q Consensus 65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~----y~eA~e~~~ral~i~~~ 140 (441)
|.-+..++ ++.+.+.|++.+-.+++... +|....-...++.-+|..|..+-. ..+=..+.++++...++
T Consensus 397 Lmasklc~----e~l~~~eegldYA~kai~~~---~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 397 LMASKLCI----ERLKLVEEGLDYAQKAISLL---GGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred HHHHHHHH----hchhhhhhHHHHHHHHHHHh---hhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 44444554 36788999999999999966 333333556777777777765432 34444444444443333
Q ss_pred hhhh---hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHh
Q 013549 141 ILGV---RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKG 217 (441)
Q Consensus 141 ~lg~---~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~ 217 (441)
.+.. +..+.+.++.-|..+++.+.|.++..+++++-..... -+.-+..++...+++|.+|+.+-.-
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~-----------~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA-----------KAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH-----------HHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3221 2346677888888999999999999998877544431 1223567777899999999999999
Q ss_pred hhhccCCchHHHHHH-------------------------------------------HHHHHHccChHHHHHHHHHHHH
Q 013549 218 LQEEEGCTGSAALSY-------------------------------------------GEYLHATRNFLLAKKFYQKVIE 254 (441)
Q Consensus 218 aL~~~~~~~~~a~~~-------------------------------------------a~~~~~qG~y~eA~~ly~rAL~ 254 (441)
++++.+.....+..- +.+...+++-.+|...+++++.
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 998322210000000 1111122344456666666665
Q ss_pred HHHhhcccCC------CCCccccccchhHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 013549 255 VLAEQKDFSD------MNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTC 327 (441)
Q Consensus 255 i~~~~~~~~~------~~~lg~~~~~~~~~~~~al~-nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~n 327 (441)
+......... ..+.-+.++++ +.+...+. -.+.++...+.-++|.-++.+|-.|. |..+..+.-
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~-~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~ 689 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSL-WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYL 689 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCch-HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHH
Confidence 5432211000 00111112221 11222232 45778888899999999999998887 888899999
Q ss_pred HHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhc
Q 013549 328 LALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 383 (441)
Q Consensus 328 La~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g 383 (441)
.|.++..+|+.+|| ...|.-|+.+ .|+|+.. +.-+|.+++-.|
T Consensus 690 ~G~~~~~~~~~~EA------~~af~~Al~l----dP~hv~s---~~Ala~~lle~G 732 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEA------KEAFLVALAL----DPDHVPS---MTALAELLLELG 732 (799)
T ss_pred hhHHHHHHHhhHHH------HHHHHHHHhc----CCCCcHH---HHHHHHHHHHhC
Confidence 99999999999987 6777777665 5788763 334566666555
No 107
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.42 E-value=2.3e-06 Score=77.50 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=77.2
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
..+|+|++|+.+|+-.....+....-..++|.+++.+|+|++|+..|.+|+.+ ... . | .+
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~~d-----d-------p-----~~ 105 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---KID-----A-------P-----QA 105 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCC-----C-------c-----hH
Confidence 47999999999999998866666677789999999999999999999999988 221 1 1 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTE 311 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e 311 (441)
..|+|.+|...|+.+.|+..|+.|+.+..
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999883
No 108
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.42 E-value=2.3e-06 Score=97.22 Aligned_cols=197 Identities=18% Similarity=0.156 Sum_probs=144.3
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
.+|.+.+|.. .-+++....+..|.-||+++.++..|+.++...|++++|+...+++.-+.++.+|.+.
T Consensus 944 ~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds----------- 1011 (1236)
T KOG1839|consen 944 LEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS----------- 1011 (1236)
T ss_pred cccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC-----------
Confidence 5777888888 7888888888888899999999999999999999999999999998877777665321
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----ccCCchHH---H
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-----EEGCTGSA---A 229 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----~~~~~~~~---a 229 (441)
...+.. ...+.+.+..+.+...|...+.+++. ..+.|+.+ -
T Consensus 1012 ----~~t~~~---------------------------y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~ 1060 (1236)
T KOG1839|consen 1012 ----PNTKLA---------------------------YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSF 1060 (1236)
T ss_pred ----HHHHHH---------------------------hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhh
Confidence 000000 01122333344455555555555554 11223333 3
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
.++..+++..++++.|..+.+.|+.+ .+. .+|+.... +.-+.+-++.++..+|+|..|....+.+..|
T Consensus 1061 ~nle~l~~~v~e~d~al~~le~A~a~---~~~-----v~g~~~l~----~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1061 INLELLLLGVEEADTALRYLESALAK---NKK-----VLGPKELE----TALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHH---Hhh-----hcCccchh----hhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 56777889999999999999999997 333 44422111 2235578999999999999999999999999
Q ss_pred HHHhhCCCCchHHHHHHHHH
Q 013549 310 TEELFGSHHPKVGVVLTCLA 329 (441)
Q Consensus 310 ~e~~lG~~HP~va~~l~nLa 329 (441)
+.+.+|++|+.+..+-..+-
T Consensus 1129 y~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1129 YKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred HHHhhCCCcccchhhHHHHH
Confidence 99999999999998776554
No 109
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.38 E-value=2.3e-06 Score=65.81 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh-chhhhhhhHHHHHHHHHHHHH
Q 013549 281 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-MQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 281 ~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG-~~eeA~~~~~Ae~ly~rAL~i 357 (441)
.++.++|..+..+|+|++|+.+|++|+.+ +|+-...+.++|.+|..+| ++++| ...+++|+++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A------~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEA------IEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHH------HHHHHHHHHc
Confidence 35789999999999999999999999998 4777789999999999999 78887 8999999886
No 110
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00014 Score=76.41 Aligned_cols=245 Identities=15% Similarity=0.112 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
-|....+++....+. -++..|++.|.+++.+. ....-++|.+.+|...|+|.+.+.....+++....
T Consensus 223 ~a~~ek~lgnaaykk----k~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKK----KDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred hhhHHHHHHHHHHHh----hhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 455566666665432 26899999999999754 34556889999999999999999988887665544
Q ss_pred hhhhh---HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC--C-Cc-chhh-----------hhhHhHHHHHHHHHH
Q 013549 141 ILGVR---VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK--P-EN-YKTY-----------GAVNSRANAVKGLVE 202 (441)
Q Consensus 141 ~lg~~---~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~--~-~~-~~~~-----------~~l~~~a~al~gl~~ 202 (441)
....- ..++-.++..|..+++++.+..+++++|.-...-. . .. .+.. .......+ ..|.-+
T Consensus 290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r-~kGne~ 368 (539)
T KOG0548|consen 290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEER-EKGNEA 368 (539)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHH-HHHHHH
Confidence 32211 11222255567778899999999999874432200 0 00 0000 00000001 135666
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
+..|+|..|...|.+++...+..+..-.|.|.+|-..|.|.+|..--+.+++. +++ -+..
T Consensus 369 Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~------------~~kg 428 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPN------------FIKA 428 (539)
T ss_pred HhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------Cch------------HHHH
Confidence 78999999999999999977767767778888999999999999999999887 111 1235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 353 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r 353 (441)
+.-=|.++..+.+|++|.+.|+++|+.- |+-......+...+..|-..+. .+..+++
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~~~~~rc~~a~~~~~~------~ee~~~r 485 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAIDGYRRCVEAQRGDET------PEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHHHhhcCCC------HHHHHHh
Confidence 5666999999999999999999999754 7777777766666665532222 3667777
No 111
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.36 E-value=2.4e-05 Score=89.19 Aligned_cols=323 Identities=14% Similarity=0.103 Sum_probs=194.5
Q ss_pred ccccCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHH
Q 013549 51 NRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEK 130 (441)
Q Consensus 51 ~~~~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~ 130 (441)
+|..|-+||++..+....+.++.+-+ -..+|+.+--..+-..-...|.-||.++.++.|....-...| +=+...
T Consensus 696 Erll~~~iPd~~Ks~~d~sv~p~dgq----~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~Rs 769 (1236)
T KOG1839|consen 696 ERLLGLDIPDTMKSYGDLSVFPYDGQ----HLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRS 769 (1236)
T ss_pred HHHhccccchhHHhccccceeeeccc----HHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHH
Confidence 45579999999999999997775422 357888888888887777888999999988777766555555 334444
Q ss_pred HHHHHHhhhhhhhhh---H---HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhc---CCCcch----------------
Q 013549 131 LQKVENFKNSILGVR---V---AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKH---KPENYK---------------- 185 (441)
Q Consensus 131 ~~ral~i~~~~lg~~---~---~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~---~~~~~~---------------- 185 (441)
...+++-..+.++.. + ..++.+.++|..-.+..+...-.-+..++..+. +.....
T Consensus 770 lKhvlK~~~r~l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~ 849 (1236)
T KOG1839|consen 770 LKHVLKDNLRLLGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLK 849 (1236)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHH
Confidence 444444333333332 1 245555555433333222211111111111000 000000
Q ss_pred -------hhhhhHhHHHHHHHHHHHHcCCHHHH---HHHHHhhhh---------c-------------------cCCchH
Q 013549 186 -------TYGAVNSRANAVKGLVELAHGNLESA---ESFFKGLQE---------E-------------------EGCTGS 227 (441)
Q Consensus 186 -------~~~~l~~~a~al~gl~~~~qG~y~eA---e~l~~~aL~---------~-------------------~~~~~~ 227 (441)
..-......... ..+....|.+.-+ +..+.+-+. . +.+.+.
T Consensus 850 ~I~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~ 928 (1236)
T KOG1839|consen 850 YITADSKNKFTAAHDVKSR-ETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPT 928 (1236)
T ss_pred hccccccccccchhhhhHH-HHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCc
Confidence 000000000000 1111112221111 111111111 0 000111
Q ss_pred HHH---H--HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013549 228 AAL---S--YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 302 (441)
Q Consensus 228 ~a~---~--~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l 302 (441)
+.. . -+...-.+|.+.+|-. .-+++..+... .+ -+||+ ....+..|+.++...|++++|...
T Consensus 929 ~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v--------~~--~~h~~--~~~~~~~La~l~~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 929 VSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV--------MG--VLHPE--VASKYRSLAKLSNRLGDNQEAIAQ 995 (1236)
T ss_pred cchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh--------hh--hcchh--HHHHHHHHHHHHhhhcchHHHHHh
Confidence 111 1 1223345678888877 66677664322 23 23343 234688999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cCCCCCcchHhhhccHHHHHHH
Q 013549 303 LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVALA 381 (441)
Q Consensus 303 ~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~~~~~~~~~~~l~nl~~~~~~ 381 (441)
-.+|.-|.|+++|.+||.+...+.||+..+....+...| ...+.|+++++. ..+++||.++.+-.|++.++..
T Consensus 996 ~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~a------l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~ 1069 (1236)
T KOG1839|consen 996 QRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGA------LKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG 1069 (1236)
T ss_pred cccceeeechhccCCCHHHHHHhhHHHHHHHhccCccch------hhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh
Confidence 999999999999999999999999999988888866555 788999999986 4577999999888999999988
Q ss_pred hccHHHHHHHhhchhhHH
Q 013549 382 RGGYAEALSVQQNRKDEG 399 (441)
Q Consensus 382 ~g~yaeal~~~~~r~~ea 399 (441)
.++++.|+...+...+..
T Consensus 1070 v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1070 VEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999988875544443
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.35 E-value=3.2e-05 Score=87.11 Aligned_cols=157 Identities=9% Similarity=-0.056 Sum_probs=115.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhc
Q 013549 100 GQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKH 179 (441)
Q Consensus 100 ~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~ 179 (441)
.+.-.|+-...+..|...|.++|++++|+.+++.+++..+..+ ..+.-++.++.+.+++..+..+ .++++..
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i----~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~-- 94 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI----SALYISGILSLSRRPLNDSNLL--NLIDSFS-- 94 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce----ehHHHHHHHHHhhcchhhhhhh--hhhhhcc--
Confidence 4566888999999999999999999999999998877766543 2455566688888887665543 3332222
Q ss_pred CCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh
Q 013549 180 KPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ 259 (441)
Q Consensus 180 ~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~ 259 (441)
...++ ++..+|.+.+-.......+..++|.+|..+|++++|...|+++|++ .
T Consensus 95 ------------------------~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D 146 (906)
T PRK14720 95 ------------------------QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA---D 146 (906)
T ss_pred ------------------------cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---C
Confidence 22334 2333333333323334457789999999999999999999999998 1
Q ss_pred cccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 260 KDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 260 ~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
|+ ...++||+|-.|..+ ++++|++++.+|+..+
T Consensus 147 ---------------~~--n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 147 ---------------RD--NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred ---------------cc--cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 11 135799999999999 9999999999998654
No 113
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.34 E-value=1.5e-05 Score=69.24 Aligned_cols=114 Identities=22% Similarity=0.122 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 361 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~ 361 (441)
+.+++|.++..+|+.++|+++|++|++ .|..-+.-...+.++|..|+..|++++| +.++++++.- .+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA------~~~L~~~~~~--~p 69 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEA------LALLEEALEE--FP 69 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHH--CC
Confidence 357899999999999999999999988 4777777788999999999999999997 7888887542 22
Q ss_pred CCCCcchHhhhccHHHHHHHhccHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013549 362 PLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAW 410 (441)
Q Consensus 362 ~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~~eae~~~~~a~~~~ 410 (441)
..+-.+... -.++.+....|++.||+.+...-..+--..++.|...|
T Consensus 70 ~~~~~~~l~--~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 70 DDELNAALR--VFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred CccccHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211112222 23677888899999999876444433333344444433
No 114
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.33 E-value=4.2e-06 Score=85.85 Aligned_cols=94 Identities=12% Similarity=0.168 Sum_probs=79.0
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
.-|.-+...|+|++|+.+|++||++ .-. ....+.++|.+|..+|+|++|+..+.+|+.+.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~---~P~-----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL---DPN-----------------NAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3466677899999999999999987 111 12457899999999999999999999999973
Q ss_pred HHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 311 EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 311 e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
|.-...+.++|.+|..+|+|++| +..|++++++.
T Consensus 67 --------P~~~~a~~~lg~~~~~lg~~~eA------~~~~~~al~l~ 100 (356)
T PLN03088 67 --------PSLAKAYLRKGTACMKLEEYQTA------KAALEKGASLA 100 (356)
T ss_pred --------cCCHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHhC
Confidence 55566789999999999999987 89999998873
No 115
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.32 E-value=4.2e-05 Score=84.26 Aligned_cols=228 Identities=15% Similarity=0.143 Sum_probs=139.4
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-------------
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV------------- 144 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~------------- 144 (441)
.+|.+++|.-+|.+|+... |..=.....-+.+|...|++..|.+-|++.+...+..-..
T Consensus 219 ~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred hcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 4688999999999999744 3335668888889999999999999998887665511000
Q ss_pred -----hHHH-------------------HHHHHHHHHhcCCcchhHHHHHHHHHH-HHhcCCCcch--------------
Q 013549 145 -----RVAA-------------------MEALAGLYLQLGQDDTSSVVADKCLQL-CEKHKPENYK-------------- 185 (441)
Q Consensus 145 -----~~~a-------------------l~~La~l~~~~G~~~~A~~l~~~~L~i-~~~~~~~~~~-------------- 185 (441)
+..+ ++-++.+++...+++.+.+....--.. .++..++ +.
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e-~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE-WDTDERRREEPNALCE 369 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh-hhhhhhcccccccccc
Confidence 0011 122344444444444443322211110 0000000 00
Q ss_pred --hhhhhHhHH-HHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 186 --TYGAVNSRA-NAVKGLVELAHGNLESAESFFKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 186 --~~~~l~~~a-~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
+..+...+. ....+++.+.-++..+++..|..--. ....+......++.+|...|+|.+|.++|-.....-
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~----- 444 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE----- 444 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-----
Confidence 000111111 23346666677777776655543222 122344556788999999999999999998865431
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
... .......+|..|..+|.|++|.+.|+++|.. -|+|-++.++ |+.+|..+|+.|+|
T Consensus 445 -----~~~---------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----~p~~~D~Ri~---Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 445 -----GYQ---------NAFVWYKLARCYMELGEYEEAIEFYEKVLIL-----APDNLDARIT---LASLYQQLGNHEKA 502 (895)
T ss_pred -----ccc---------chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCchhhhhh---HHHHHHhcCCHHHH
Confidence 111 1234579999999999999999999999964 4666666555 45999999997654
No 116
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.31 E-value=9e-07 Score=61.07 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc-CCCCCcc
Q 013549 321 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPLESEG 367 (441)
Q Consensus 321 va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~-~~~~~~~ 367 (441)
|+.+++|||.+|..+|++++| +.+++++++|++. .|++||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEA------LELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHH------HHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchh------hHHHHHHHHHHHHHhcccccC
Confidence 688999999999999999987 9999999999965 5899996
No 117
>PLN02789 farnesyltranstransferase
Probab=98.29 E-value=0.00015 Score=73.36 Aligned_cols=187 Identities=10% Similarity=0.039 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~ 159 (441)
++|.+|+.+++.++. ..+++.+|+..+.+++.+.+... .+++..+.++..+
T Consensus 34 ~~~~~a~~~~ra~l~-------------------------~~e~serAL~lt~~aI~lnP~~y----taW~~R~~iL~~L 84 (320)
T PLN02789 34 PEFREAMDYFRAVYA-------------------------SDERSPRALDLTADVIRLNPGNY----TVWHFRRLCLEAL 84 (320)
T ss_pred HHHHHHHHHHHHHHH-------------------------cCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHc
Confidence 578888888887775 45789999999999998887653 3667777777777
Q ss_pred C-CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC--HHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549 160 G-QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN--LESAESFFKGLQEEEGCTGSAALSYGEYL 236 (441)
Q Consensus 160 G-~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~--y~eAe~l~~~aL~~~~~~~~~a~~~a~~~ 236 (441)
| ++.++..++++++..--+. ...... .+.+....|+ ++++..++.+++...+....+-...+.++
T Consensus 85 ~~~l~eeL~~~~~~i~~npkn-------yqaW~~-----R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l 152 (320)
T PLN02789 85 DADLEEELDFAEDVAEDNPKN-------YQIWHH-----RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVL 152 (320)
T ss_pred chhHHHHHHHHHHHHHHCCcc-------hHHhHH-----HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 7 4577777777775332111 122222 2444445666 37889999999996666666777778899
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHH
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM---GNF----GDAEEILTRTLTK 309 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q---G~y----~eAe~l~~rAL~i 309 (441)
...|+|++|++++.++|++ .-. | ..+.+..+.+.... |++ +++.++..+++.+
T Consensus 153 ~~l~~~~eeL~~~~~~I~~---d~~----------N-------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 153 RTLGGWEDELEYCHQLLEE---DVR----------N-------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA 212 (320)
T ss_pred HHhhhHHHHHHHHHHHHHH---CCC----------c-------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence 9999999999999999998 111 1 13567777777766 444 3566666677665
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549 310 TEELFGSHHPKVGVVLTCLALMFRNK 335 (441)
Q Consensus 310 ~e~~lG~~HP~va~~l~nLa~ly~~q 335 (441)
.|.-.++.+.++.+|...
T Consensus 213 --------~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 213 --------NPRNESPWRYLRGLFKDD 230 (320)
T ss_pred --------CCCCcCHHHHHHHHHhcC
Confidence 466677888888999873
No 118
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.27 E-value=5.2e-06 Score=63.81 Aligned_cols=63 Identities=21% Similarity=0.359 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG-NFGDAEEILTR 305 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG-~y~eAe~l~~r 305 (441)
.+...+|.++..+|+|++|+..|.+|+++ . |+ ...++.++|.+|..+| +|++|++.+++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~---------------p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL---D---------------PN--NAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH---S---------------TT--HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C---------------CC--CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34567788899999999999999999988 1 11 2346789999999999 79999999999
Q ss_pred HHHH
Q 013549 306 TLTK 309 (441)
Q Consensus 306 AL~i 309 (441)
|+++
T Consensus 64 al~l 67 (69)
T PF13414_consen 64 ALKL 67 (69)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9876
No 119
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.26 E-value=0.00061 Score=59.64 Aligned_cols=226 Identities=23% Similarity=0.263 Sum_probs=157.6
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~ 159 (441)
+.+..+...+...+...... ........++..+...|++.++...+...+.. .........+..++..+...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 108 (291)
T COG0457 37 GELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEAL 108 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHH
Confidence 45777888888888655322 35778899999999999999999999988653 00111123455566666677
Q ss_pred CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHH-HHHHcCCHHHHHHHHHhhhhccC---CchHHHHHHHHH
Q 013549 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGL-VELAHGNLESAESFFKGLQEEEG---CTGSAALSYGEY 235 (441)
Q Consensus 160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl-~~~~qG~y~eAe~l~~~aL~~~~---~~~~~a~~~a~~ 235 (441)
+++..+...+..++...... .......+. ++...|++++|...|++++...+ .........+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 109 GKYEEALELLEKALALDPDP------------DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCc------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence 77666666665554221111 011122344 67799999999999999977322 233344555666
Q ss_pred HHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549 236 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 315 (441)
Q Consensus 236 ~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG 315 (441)
+...|++++|...+.+++.+. .. . ......+++..+..+|++++|...+.+++.....
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~---~~-----~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--- 234 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN---PD-----D-----------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--- 234 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC---cc-----c-----------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---
Confidence 788999999999999999983 11 0 0134689999999999999999999999998876
Q ss_pred CCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 316 SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 316 ~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
....+..++..+...|.++++ ...+.+++...
T Consensus 235 -----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 266 (291)
T COG0457 235 -----NAEALYNLALLLLELGRYEEA------LEALEKALELD 266 (291)
T ss_pred -----cHHHHhhHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 556677777877766666665 66777776654
No 120
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.25 E-value=3.9e-06 Score=63.93 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=52.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
.|..+..+|+|++|+..|++++...+....+...+|.++..+|++++|+.+|++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3667789999999999999999988888889999999999999999999999999987
No 121
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.24 E-value=0.00022 Score=76.53 Aligned_cols=209 Identities=20% Similarity=0.307 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
++.-...++.+.|+|++|+++++..... +-+++..++..+.++..+|++++|+..+...++. .|+.+.....
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----NPdn~~Yy~~ 77 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR----NPDNYDYYRG 77 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHH
Confidence 4555667888999999999998764222 2233456778889999999999998888777532 1211110001
Q ss_pred hHhHHHHHHHHHH-HHcCCHHHHHHHHHhhhh--------------------------------ccCCchHHHHHHHHHH
Q 013549 190 VNSRANAVKGLVE-LAHGNLESAESFFKGLQE--------------------------------EEGCTGSAALSYGEYL 236 (441)
Q Consensus 190 l~~~a~al~gl~~-~~qG~y~eAe~l~~~aL~--------------------------------~~~~~~~~a~~~a~~~ 236 (441)
+ ..++ |+-. ..-...+.-..+|++.-. .....|.+..++-.+|
T Consensus 78 L---~~~~-g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly 153 (517)
T PF12569_consen 78 L---EEAL-GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLY 153 (517)
T ss_pred H---HHHH-hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 0 0000 0000 000111222222222211 0112334445555555
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
....+..--+.+.+.-+.-.+....+...+ . ....+....+.+++-||+.|...|+|++|.++..+|++.
T Consensus 154 ~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~--~-~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------- 223 (517)
T PF12569_consen 154 KDPEKAAIIESLVEEYVNSLESNGSFSNGD--D-EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------- 223 (517)
T ss_pred cChhHHHHHHHHHHHHHHhhcccCCCCCcc--c-cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------
Confidence 544443333333333222211111100000 0 001122234678899999999999999999999999975
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhh
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
-|.....+..-|.+|..+|++++|
T Consensus 224 -tPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 224 -TPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 388889999999999999999998
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.24 E-value=3.2e-05 Score=70.04 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
++..+..+|..+..+|+|++|+.+|+-...+ .|.......|||.+++.+|+|++| ...|.+|+.+-
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~A------I~aY~~A~~L~ 99 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEA------IYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC
Confidence 4667899999999999999999999877665 488889999999999999999987 89999997663
Q ss_pred hcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 359 KAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 359 ~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
+++|. ..-|++++++..|+.+.|...+..
T Consensus 100 ----~ddp~---~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 100 ----IDAPQ---APWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred ----CCCch---HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46664 456899999999999999887633
No 123
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.9e-05 Score=77.71 Aligned_cols=236 Identities=17% Similarity=0.112 Sum_probs=153.0
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhhhhhhhhh-HHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYV--------EAIEKLQKVENFKNSILGVR-VAAM 149 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~--------eA~e~~~ral~i~~~~lg~~-~~al 149 (441)
-|+|++|+--+++.+.+..... ..|-...++...++.+-..+-.+. .|.+.+++. .+++.... -..+
T Consensus 96 ~~~~~~a~~dar~~~r~kd~~~-k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~---~~s~s~~pac~~a 171 (486)
T KOG0550|consen 96 LGRFEEALGDARQSVRLKDGFS-KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKL---APSHSREPACFKA 171 (486)
T ss_pred HHhHhhcccchhhheecCCCcc-ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcc---cccccCCchhhHH
Confidence 4788999999999888775443 345555555555554433322221 111111111 11100000 0011
Q ss_pred HHH-HHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHH
Q 013549 150 EAL-AGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSA 228 (441)
Q Consensus 150 ~~L-a~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~ 228 (441)
.-| +.++..+|++++|....-..+.+ +. .+..+..+.|+++...++.+.|..+|+++|...+.+..+
T Consensus 172 ~~lka~cl~~~~~~~~a~~ea~~ilkl---d~---------~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s 239 (486)
T KOG0550|consen 172 KLLKAECLAFLGDYDEAQSEAIDILKL---DA---------TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS 239 (486)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHhc---cc---------chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH
Confidence 111 45677789998887554433322 11 112223356888889999999999999999954444222
Q ss_pred H------------HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCH
Q 013549 229 A------------LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF 296 (441)
Q Consensus 229 a------------~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y 296 (441)
- -.-|+-..++|+|.+|.++|-.||.| +++... ..+-.+.|.|.+....|+.
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i--------dP~n~~--------~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI--------DPSNKK--------TNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC--------Cccccc--------hhHHHHHHhHhhhcccCCc
Confidence 1 11266677899999999999999999 222211 1223568999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
.||+.-...|+.|- |.....|.--|..|...++|++| ...|++|+..-+.
T Consensus 304 ~eaisdc~~Al~iD--------~syikall~ra~c~l~le~~e~A------V~d~~~a~q~~~s 353 (486)
T KOG0550|consen 304 REAISDCNEALKID--------SSYIKALLRRANCHLALEKWEEA------VEDYEKAMQLEKD 353 (486)
T ss_pred hhhhhhhhhhhhcC--------HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhccc
Confidence 99999999999984 56778888899999999999998 7888888776543
No 124
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=6.7e-06 Score=80.96 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=76.9
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
|+=+..-++|.+|+..|.+||++ .-. ....++|-|.+|..+|.|+.|.+=.+.||.|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l---~P~-----------------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--- 144 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL---DPT-----------------NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--- 144 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc---CCC-----------------cchHHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence 33445668899999999999988 111 1234789999999999999999999999987
Q ss_pred hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
.|....++..||.+|..+|++++| +.-|++||+|
T Consensus 145 -----Dp~yskay~RLG~A~~~~gk~~~A------~~aykKaLel 178 (304)
T KOG0553|consen 145 -----DPHYSKAYGRLGLAYLALGKYEEA------IEAYKKALEL 178 (304)
T ss_pred -----ChHHHHHHHHHHHHHHccCcHHHH------HHHHHhhhcc
Confidence 588899999999999999999987 7779999988
No 125
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.001 Score=70.80 Aligned_cols=258 Identities=14% Similarity=0.069 Sum_probs=160.3
Q ss_pred hhhHHHHHHHHHHhhhcccc-----------------------CCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPS-----------------------DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~-----------------------~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
.|+|++|+.+|+.-...... .......++=..+.|.|.++...|+|.+|+++++.|+
T Consensus 123 l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 123 LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 68999999999987443222 1122223466789999999999999999999999999
Q ss_pred Hhhhhhhhhh----------H-HHHHHHHHHHHhcCCcchhHHHHHHHHHHH----------HhcC-----CCcchhhhh
Q 013549 136 NFKNSILGVR----------V-AAMEALAGLYLQLGQDDTSSVVADKCLQLC----------EKHK-----PENYKTYGA 189 (441)
Q Consensus 136 ~i~~~~lg~~----------~-~al~~La~l~~~~G~~~~A~~l~~~~L~i~----------~~~~-----~~~~~~~~~ 189 (441)
+++.+.+-.. + ...--|+.++..+|+-.+|...|..++..- .+.. .-.+.+-..
T Consensus 203 ~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~ 282 (652)
T KOG2376|consen 203 RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDL 282 (652)
T ss_pred HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHH
Confidence 9988765321 1 122347888999999999998777765321 1100 000111000
Q ss_pred hHhHH------------------H-H---HHHHHHHHcCC----------------------------------HHHHHH
Q 013549 190 VNSRA------------------N-A---VKGLVELAHGN----------------------------------LESAES 213 (441)
Q Consensus 190 l~~~a------------------~-a---l~gl~~~~qG~----------------------------------y~eAe~ 213 (441)
+..+- + + ..++..+..++ +..|+.
T Consensus 283 l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e 362 (652)
T KOG2376|consen 283 LKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIE 362 (652)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHH
Confidence 00000 0 0 01111111222 222222
Q ss_pred HHHhhhhccCCc-hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 013549 214 FFKGLQEEEGCT-GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 292 (441)
Q Consensus 214 l~~~aL~~~~~~-~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~ 292 (441)
++...-+.+++. ..+++..+.+...+|+++.|...++.-++.+.... ..-...|. +.+.+=.+|..
T Consensus 363 ~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~--------~~~~~~P~-----~V~aiv~l~~~ 429 (652)
T KOG2376|consen 363 LLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI--------LEAKHLPG-----TVGAIVALYYK 429 (652)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh--------hhhccChh-----HHHHHHHHHHh
Confidence 222222234444 33556678888999999999999997775432211 11111122 33455667888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 293 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 293 qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
-++-+-|-..+.+|+..+....-.. +.....+--+|.+-.+-|+-++| -.+|+.-++
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea------~s~leel~k 486 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEA------SSLLEELVK 486 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHH------HHHHHHHHH
Confidence 8888999999999999999886555 77778888888888888988877 556655443
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.16 E-value=1.6e-05 Score=79.47 Aligned_cols=239 Identities=16% Similarity=0.133 Sum_probs=132.5
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..|.|..++.-++ +.. .+.+.-.....-+...|..+|+|+..+.-.... . .+...++..++..+.
T Consensus 13 y~G~Y~~~i~e~~--~~~------~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~------~-~~~l~av~~la~y~~ 77 (290)
T PF04733_consen 13 YLGNYQQCINEAS--LKS------FSPENKLERDFYQYRSYIALGQYDSVLSEIKKS------S-SPELQAVRLLAEYLS 77 (290)
T ss_dssp CTT-HHHHCHHHH--CHT------STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT------S-SCCCHHHHHHHHHHC
T ss_pred HhhhHHHHHHHhh--ccC------CCchhHHHHHHHHHHHHHHcCChhHHHHHhccC------C-ChhHHHHHHHHHHHh
Confidence 4688998886655 211 123345666777888899999998876544321 1 111223444444332
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH 237 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~ 237 (441)
...+. ++.+.-+........ .........+.+.++...|++++|..++.+. . ......-.-.+|.
T Consensus 78 ~~~~~-------e~~l~~l~~~~~~~~---~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~-~lE~~al~Vqi~L 142 (290)
T PF04733_consen 78 SPSDK-------ESALEELKELLADQA---GESNEIVQLLAATILFHEGDYEEALKLLHKG----G-SLELLALAVQILL 142 (290)
T ss_dssp TSTTH-------HCHHHHHHHCCCTS------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----T-CHHHHHHHHHHHH
T ss_pred Cccch-------HHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----C-cccHHHHHHHHHH
Confidence 11111 222222222221111 1111223345677777899999998887765 1 1122222345778
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHH--HHHHcC--CHHHHHHHHHHHHHHHHHh
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ--LEAHMG--NFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~--ly~~qG--~y~eAe~l~~rAL~i~e~~ 313 (441)
.++|++.|...+++.-++ . . | .++.+|+. +....| +|.+|- -+|++
T Consensus 143 ~~~R~dlA~k~l~~~~~~---~-----e----------D----~~l~qLa~awv~l~~g~e~~~~A~-------y~f~E- 192 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQI---D-----E----------D----SILTQLAEAWVNLATGGEKYQDAF-------YIFEE- 192 (290)
T ss_dssp HTT-HHHHHHHHHHHHCC---S-----C----------C----HHHHHHHHHHHHHHHTTTCCCHHH-------HHHHH-
T ss_pred HcCCHHHHHHHHHHHHhc---C-----C----------c----HHHHHHHHHHHHHHhCchhHHHHH-------HHHHH-
Confidence 999999999888775433 1 1 1 12345554 444456 455554 45555
Q ss_pred hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHH
Q 013549 314 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 389 (441)
Q Consensus 314 lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal 389 (441)
+....|.+..+++.+|.++..+|+|++| +.++++|++. .+.+|+ ++-|+.++....|+-.++.
T Consensus 193 l~~~~~~t~~~lng~A~~~l~~~~~~eA------e~~L~~al~~----~~~~~d---~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 193 LSDKFGSTPKLLNGLAVCHLQLGHYEEA------EELLEEALEK----DPNDPD---TLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HHCCS--SHHHHHHHHHHHHHCT-HHHH------HHHHHHHCCC-----CCHHH---HHHHHHHHHHHTT-TCHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHh----ccCCHH---HHHHHHHHHHHhCCChhHH
Confidence 2345566778899999999999999997 8888887532 234444 6678888888888774433
No 127
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.12 E-value=1.1e-05 Score=83.79 Aligned_cols=73 Identities=11% Similarity=-0.037 Sum_probs=63.4
Q ss_pred CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
+.-|+.+...+|++..|. ..|+|++|+.+|+++|++. |+++....+++|+|.+|..+|++++|++.+++++
T Consensus 69 ~~dP~~a~a~~NLG~AL~----~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLF----SKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred cCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445677788999999983 4789999999999999865 6676666889999999999999999999999998
Q ss_pred Hh
Q 013549 136 NF 137 (441)
Q Consensus 136 ~i 137 (441)
++
T Consensus 140 el 141 (453)
T PLN03098 140 RD 141 (453)
T ss_pred Hh
Confidence 76
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0031 Score=61.22 Aligned_cols=157 Identities=22% Similarity=0.274 Sum_probs=115.9
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA 238 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~ 238 (441)
.|+.+. +++|++.+....|.. .|..-+.++.+-..|+|++|+++|++.|.+++.+..+--.=-.+...
T Consensus 65 ~~~~~l----Aq~C~~~L~~~fp~S--------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 65 TGRDDL----AQKCINQLRDRFPGS--------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA 132 (289)
T ss_pred hcchHH----HHHHHHHHHHhCCCC--------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 355544 456666655555432 24444677777899999999999999999765442222222236778
Q ss_pred ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549 239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 318 (441)
Q Consensus 239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H 318 (441)
||+--+|+.....=|+.|- + | ..+-.-|+.+|...|+|++|.-+|++.+-|.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~-----------~------D---~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-------- 184 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFM-----------N------D---QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-------- 184 (289)
T ss_pred cCCcHHHHHHHHHHHHHhc-----------C------c---HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------
Confidence 9999999998888888851 1 0 1356789999999999999999999998763
Q ss_pred chHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 319 PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 319 P~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
|..-.....||.++..+|-. .++..|..+|.|||++-
T Consensus 185 P~n~l~f~rlae~~Yt~gg~---eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGA---ENLELARKYYERALKLN 221 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhC
Confidence 66667788889999999974 44667899999999985
No 129
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.11 E-value=0.00081 Score=68.61 Aligned_cols=248 Identities=16% Similarity=0.119 Sum_probs=134.4
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
-.|++++|=.++.++-+.- ..++..++..++.++-.+|+|..|.+...+.+...+...- .+.=...+|.
T Consensus 130 qrgd~~~an~yL~eaae~~-------~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~----vlrLa~r~y~ 198 (400)
T COG3071 130 QRGDEDRANRYLAEAAELA-------GDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPE----VLRLALRAYI 198 (400)
T ss_pred hcccHHHHHHHHHHHhccC-------CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH----HHHHHHHHHH
Confidence 3567777777777776532 1135566777777888888888888877777666655421 1222334566
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH---HHHhhhhccCCchHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES---FFKGLQEEEGCTGSAALSYGE 234 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~---l~~~aL~~~~~~~~~a~~~a~ 234 (441)
..|++.+...+..+. .+..-.+.++...+... +..|+.. ..++-+.++. +.++.......++....+|+.
T Consensus 199 ~~g~~~~ll~~l~~L----~ka~~l~~~e~~~le~~--a~~glL~-q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~ 271 (400)
T COG3071 199 RLGAWQALLAILPKL----RKAGLLSDEEAARLEQQ--AWEGLLQ-QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAE 271 (400)
T ss_pred HhccHHHHHHHHHHH----HHccCCChHHHHHHHHH--HHHHHHH-HHhccccchHHHHHHHhccHHhhcChhHHHHHHH
Confidence 677765544333322 22221111122222111 2222221 1111111221 222222222333455555665
Q ss_pred HHHHccChHHHHHHHHHHHHHHHh--------hcccCCCCCcc-----ccccchhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013549 235 YLHATRNFLLAKKFYQKVIEVLAE--------QKDFSDMNTLG-----SCNMALEEVALAATFALGQLEAHMGNFGDAEE 301 (441)
Q Consensus 235 ~~~~qG~y~eA~~ly~rAL~i~~~--------~~~~~~~~~lg-----~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~ 301 (441)
-+...|++++|..+-+.+|.-..+ ...+.++..+- ....||+.+ ..+..||.+|...+.|.+|.+
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHH
Confidence 556666666666666666542100 00000000000 000011111 124689999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 302 ILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 302 l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
+|+.||...- -+..++-||.+|..+|+.++| +..++.+|-....
T Consensus 350 ~leaAl~~~~---------s~~~~~~la~~~~~~g~~~~A------~~~r~e~L~~~~~ 393 (400)
T COG3071 350 ALEAALKLRP---------SASDYAELADALDQLGEPEEA------EQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHhcCC---------ChhhHHHHHHHHHHcCChHHH------HHHHHHHHHHhcC
Confidence 9999887542 357788999999999999887 9999999955543
No 130
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=1.3e-05 Score=78.97 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=74.2
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
...++|.+|...|.+||...+..+.-..+-|.+|...|.|+.|.+-.+.||.| +++ ..-+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~------------yska 151 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--------DPH------------YSKA 151 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------ChH------------HHHH
Confidence 47899999999999999965555444567788999999999999999999999 112 3457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
+.-||.+|..+|+|.+|++.|++||+|
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 899999999999999999999999876
No 131
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.09 E-value=5.2e-05 Score=75.75 Aligned_cols=169 Identities=20% Similarity=0.231 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
+..-.|.+|...|++++|+.++.+.- .+ ...--..-+|..+++.+.|...+++.- +.. +...
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~~-----~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~----~~~-----eD~~ 165 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKGG-----SL----ELLALAVQILLKMNRPDLAEKELKNMQ----QID-----EDSI 165 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTTT-----CH----HHHHHHHHHHHHTT-HHHHHHHHHHHH----CCS-----CCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHccC-----cc----cHHHHHHHHHHHcCCHHHHHHHHHHHH----hcC-----CcHH
Confidence 44556677888999999998887631 01 111123456888999998887665542 211 1122
Q ss_pred hHhHHHHHHHHHHHHcC--CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549 190 VNSRANAVKGLVELAHG--NLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 267 (441)
Q Consensus 190 l~~~a~al~gl~~~~qG--~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~ 267 (441)
+...+. +.+.+..| +|.+|-.+|++.-...+.++.+.+..|.++..+|+|+||+.++++|++. . +
T Consensus 166 l~qLa~---awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~---~-- 232 (290)
T PF04733_consen 166 LTQLAE---AWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----D---P-- 232 (290)
T ss_dssp HHHHHH---HHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------C--
T ss_pred HHHHHH---HHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----c---c--
Confidence 323322 33444555 6999999999966665556677778898999999999999999998753 1 0
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549 268 LGSCNMALEEVALAATFALGQLEAHMGNF-GDAEEILTRTLTKTEELFGSHHPKVGVV 324 (441)
Q Consensus 268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y-~eAe~l~~rAL~i~e~~lG~~HP~va~~ 324 (441)
. ...++.|+..+...+|+- +.+++++.+.. ..-|+||-+...
T Consensus 233 --------~--~~d~LaNliv~~~~~gk~~~~~~~~l~qL~-----~~~p~h~~~~~~ 275 (290)
T PF04733_consen 233 --------N--DPDTLANLIVCSLHLGKPTEAAERYLSQLK-----QSNPNHPLVKDL 275 (290)
T ss_dssp --------C--HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH-----HHTTTSHHHHHH
T ss_pred --------C--CHHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HhCCCChHHHHH
Confidence 0 124678999999999999 56666766632 357889987643
No 132
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.09 E-value=8.4e-06 Score=62.04 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 285 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
.+|..+..+|+|++|++.|++++. .+|.-...+..+|.+|..+|++++| ...|++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A------~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEA------LAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 589999999999999999999985 5599999999999999999999987 89999998763
No 133
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.08 E-value=4.3e-05 Score=75.25 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=81.4
Q ss_pred HHHHHHHHH-HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 228 AALSYGEYL-HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 228 ~a~~~a~~~-~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
..+..|..+ ..+|+|++|...|++.+..+ -. +.+ .-.++..||.+|..+|+|++|...|+++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~----s~~----------a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PD----STY----------QPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cC----Ccc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444433 56799999999999999873 11 111 1246789999999999999999999998
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+..+ |+||.+...+..+|.+|..+|++++| ...|++.++.+
T Consensus 207 v~~y-----P~s~~~~dAl~klg~~~~~~g~~~~A------~~~~~~vi~~y 247 (263)
T PRK10803 207 VKNY-----PKSPKAADAMFKVGVIMQDKGDTAKA------KAVYQQVIKKY 247 (263)
T ss_pred HHHC-----CCCcchhHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 8876 79999999999999999999999887 78888876554
No 134
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=6.2e-05 Score=76.94 Aligned_cols=138 Identities=19% Similarity=0.218 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh-----------hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-----------LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ 174 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~-----------lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~ 174 (441)
..|...---|+.|+..|+|..|...|++++...+.. ....+....||+.+|..+.+|.+|...++++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 456777788999999999999999999987655411 223466788999999999999999988888774
Q ss_pred HHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHH-HHHHHHHHH
Q 013549 175 LCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLL-AKKFYQKVI 253 (441)
Q Consensus 175 i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~e-A~~ly~rAL 253 (441)
+-. .+..++.. .|.+++.+|+|+.|...|++++...|..-.+..-+..+.....++.+ ...+|.+.+
T Consensus 286 ~~~-------~N~KALyR-----rG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 286 LDP-------NNVKALYR-----RGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred cCC-------CchhHHHH-----HHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 12234443 47777899999999999999999766665565666655555555544 588999988
Q ss_pred HH
Q 013549 254 EV 255 (441)
Q Consensus 254 ~i 255 (441)
.-
T Consensus 354 ~k 355 (397)
T KOG0543|consen 354 AK 355 (397)
T ss_pred hc
Confidence 76
No 135
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.07 E-value=2.1e-05 Score=63.23 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
+|+|++|+.++++.++.... .+ -...+.++|.+|+.+|+|.+|++.+++ +...+..+ ....-++.++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~----~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP----DIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH----HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH----HHHHHHHHHHHH
Confidence 57899999999999986633 22 455677799999999999999999998 44444322 233456788999
Q ss_pred cCCcchhHHHHHHH
Q 013549 159 LGQDDTSSVVADKC 172 (441)
Q Consensus 159 ~G~~~~A~~l~~~~ 172 (441)
+|++++|...++++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999998877653
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.04 E-value=0.00037 Score=77.72 Aligned_cols=215 Identities=14% Similarity=0.098 Sum_probs=156.3
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~ 183 (441)
.+..|..+.-||.+|++.-+...|-..|++|.++... ++.+....+..|....+.++|... ++...++.....
T Consensus 488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat----daeaaaa~adtyae~~~we~a~~I---~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT----DAEAAAASADTYAEESTWEEAFEI---CLRAAQKAPAFA 560 (1238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----hhhhHHHHHHHhhccccHHHHHHH---HHHHhhhchHHH
Confidence 5678889999999999988999999999999776532 234556677777777777766654 443333332100
Q ss_pred chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549 184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS 263 (441)
Q Consensus 184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~ 263 (441)
......-.|.+|+..+++-+|...|+.++...+..-+....+|++|...|+|.-|...|-||....
T Consensus 561 -------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr------- 626 (1238)
T KOG1127|consen 561 -------CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR------- 626 (1238)
T ss_pred -------HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------
Confidence 000001258889999999999999999999877777899999999999999999999999998772
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhh
Q 013549 264 DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSA 343 (441)
Q Consensus 264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~ 343 (441)
|+ ...+-.-.+.+.+++|+|.+|...+...+..+..-.-- --..+.++..++..+..+|=+-+|
T Consensus 627 -----------P~--s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~-q~gLaE~~ir~akd~~~~gf~~ka-- 690 (1238)
T KOG1127|consen 627 -----------PL--SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG-QNGLAESVIRDAKDSAITGFQKKA-- 690 (1238)
T ss_pred -----------cH--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhhhh--
Confidence 11 12345678889999999999999999888777654211 123566666677777777766555
Q ss_pred hHHHHHHHHHHHHHhh
Q 013549 344 LLIQEGLYRRALEFLK 359 (441)
Q Consensus 344 ~~~Ae~ly~rAL~i~~ 359 (441)
...++++++++.
T Consensus 691 ----vd~~eksie~f~ 702 (1238)
T KOG1127|consen 691 ----VDFFEKSIESFI 702 (1238)
T ss_pred ----hHHHHHHHHHHH
Confidence 566677776654
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.00 E-value=0.00059 Score=66.42 Aligned_cols=165 Identities=10% Similarity=0.003 Sum_probs=108.4
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|+|++|+..|++.+... |..+........+|.+|+.+|+|++|+..+++.+...+.+... ..++.-++..+..
T Consensus 45 ~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~ 118 (243)
T PRK10866 45 DGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA 118 (243)
T ss_pred CCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence 589999999999999866 4556778889999999999999999999999999998876433 2344555544433
Q ss_pred cCC-----------cchhHHHHHHH---HHHHHhcCCCcchhhhhhHhHHHH----------HHHHHHHHcCCHHHHHHH
Q 013549 159 LGQ-----------DDTSSVVADKC---LQLCEKHKPENYKTYGAVNSRANA----------VKGLVELAHGNLESAESF 214 (441)
Q Consensus 159 ~G~-----------~~~A~~l~~~~---L~i~~~~~~~~~~~~~~l~~~a~a----------l~gl~~~~qG~y~eAe~l 214 (441)
+++ .+.-.....++ ++.+.+..|...- ......+... ..+..|...|+|..|..-
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-a~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r 197 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-TTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNR 197 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 331 11101111222 2223333332210 1111111111 135567789999999999
Q ss_pred HHhhhhccCC---chHHHHHHHHHHHHccChHHHHHHHH
Q 013549 215 FKGLQEEEGC---TGSAALSYGEYLHATRNFLLAKKFYQ 250 (441)
Q Consensus 215 ~~~aL~~~~~---~~~~a~~~a~~~~~qG~y~eA~~ly~ 250 (441)
|+.+++.-+. ...+...+...|...|..++|.....
T Consensus 198 ~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 198 VEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999994333 34566777889999999999977543
No 138
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.00 E-value=0.0015 Score=71.33 Aligned_cols=209 Identities=10% Similarity=0.032 Sum_probs=144.3
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|+|..+...||+++... +|. | ..++.++..|..-|.-..|+-+.+..+.+.+.--.+. .-+-.---++..
T Consensus 336 ~g~f~~lae~fE~~~~~~---~~~-~----e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s-~~Lmasklc~e~ 406 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALPFS---FGE-H----ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS-VLLMASKLCIER 406 (799)
T ss_pred HHHHHHHHHHHHHHhHhh---hhh-H----HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch-HHHHHHHHHHhc
Confidence 467888888888887644 222 2 2366777777788888888888887766663211111 111111224557
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcC---C--------HHHHHHHHHhhhhccCCchH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG---N--------LESAESFFKGLQEEEGCTGS 227 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG---~--------y~eAe~l~~~aL~~~~~~~~ 227 (441)
.+.+.+++.|+.++++..+... ..+..+..-..|++|..+- + ..++...+++|+...+..+.
T Consensus 407 l~~~eegldYA~kai~~~~~~~-------~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGGQR-------SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhhhh-------hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 7889999999999988664332 2344555556777775322 1 34566777777776666667
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
+.+.++--|-.+++.+.|.+.-+++|+. ..+ + .+.+..-|+.++..+++|.+|+.+..-||
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l---~~~-----~-----------~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALAL---NRG-----D-----------SAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh---cCC-----c-----------cHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 7777777788899999999999999998 333 1 23467899999999999999999999999
Q ss_pred HHHHHhhCCCCchHH
Q 013549 308 TKTEELFGSHHPKVG 322 (441)
Q Consensus 308 ~i~e~~lG~~HP~va 322 (441)
+-+.+-++-.|-.+-
T Consensus 541 ~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIH 555 (799)
T ss_pred HHhhhhhhhchhhhh
Confidence 988886655554443
No 139
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.012 Score=61.64 Aligned_cols=263 Identities=14% Similarity=0.162 Sum_probs=172.7
Q ss_pred CCCccccCCCchHHHHHHHH---HHHHhhhhc---cChhhHHHHHHHHHHhhhccccCCCCCchhH--------HHHHHH
Q 013549 48 GNGNRINGLNSNPVVLQMIN---YALSHARSQ---KSDESYSQGMLVLEQCLSTQPSDGQLAESWR--------GISLLA 113 (441)
Q Consensus 48 ~~~~~~~g~~h~~~a~~m~n---~a~~~~~~~---~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~--------a~~l~n 113 (441)
+-|+++.|..-|..-..+-+ ++++|--.. --.|=|++|..+-++++...++.- ..+.. ..++-+
T Consensus 251 ~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklk--q~d~~srilsm~km~~LE~ 328 (629)
T KOG2300|consen 251 GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLK--QADLMSRILSMFKMILLEH 328 (629)
T ss_pred CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc--cccchhHHHHHHHHHHHHH
Confidence 34556887777776666555 444442111 134668899998888887755543 23322 234555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh-----HHHHHHHHHHH-HhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 114 MSTLLYESGNYVEAIEKLQKVENFKNSILGVR-----VAAMEALAGLY-LQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 114 La~l~~~qG~y~eA~e~~~ral~i~~~~lg~~-----~~al~~La~l~-~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
+..+---+|+|.+|++-...+.+.+.+..+.- ..-+.-|.|+| ...+.|+.|+..+..|.+..+.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--------- 399 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--------- 399 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH---------
Confidence 66666679999999999999888877665521 12344455654 4667788888888777655433
Q ss_pred hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCc-------hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549 188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCT-------GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK 260 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~-------~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~ 260 (441)
.++....+...+..|+.+|+-++--+..+..=..+... +++.+-+|-....|++|.||.-+.++.|.+. +
T Consensus 400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma---n 476 (629)
T KOG2300|consen 400 IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA---N 476 (629)
T ss_pred HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---c
Confidence 34555566677888999887654322222211111100 1233445777889999999999999999993 1
Q ss_pred ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549 261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337 (441)
Q Consensus 261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~ 337 (441)
. + . .-..+.-.+.-||.+....|+-.|++.+..-+++...|. +|||-..-+..-+-.+|...|.
T Consensus 477 a---e-d-------~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 477 A---E-D-------LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred h---h-h-------HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCc
Confidence 1 0 0 111233356789999999999999999999999998876 6788777666666677777765
No 140
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.95 E-value=0.00055 Score=64.56 Aligned_cols=168 Identities=21% Similarity=0.163 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~ 186 (441)
.+..+...|..+..+|+|.+|+..|++.+...+.+. ....+...++..+..+|++++|...+++.+... |.+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----P~~~~~ 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----PNSPKA 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TT-TTH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCcch
Confidence 567789999999999999999999999987776531 122466788999999999999998888776433 322211
Q ss_pred hhhhHhHHHHHHHHHH-----------HHcCCHHHHHHHHHhhhhccCCch---HH--------------HHHHHHHHHH
Q 013549 187 YGAVNSRANAVKGLVE-----------LAHGNLESAESFFKGLQEEEGCTG---SA--------------ALSYGEYLHA 238 (441)
Q Consensus 187 ~~~l~~~a~al~gl~~-----------~~qG~y~eAe~l~~~aL~~~~~~~---~~--------------a~~~a~~~~~ 238 (441)
..+.-+.|+.+ ..++...+|...|+..+...|... .+ -...|..|..
T Consensus 79 -----~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 79 -----DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp -----HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222334443 234556789999999988333221 11 1235788999
Q ss_pred ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013549 239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 301 (441)
Q Consensus 239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~ 301 (441)
+|+|.-|..-|+.+++-+ .+ + + ..-.++.-|...|..+|..+.|..
T Consensus 154 ~~~y~aA~~r~~~v~~~y---p~-----t-------~--~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENY---PD-----T-------P--AAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHHS---TT-----S-------H--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHC---CC-----C-------c--hHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999998873 11 1 0 012378899999999999996643
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.92 E-value=7.4e-05 Score=73.62 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=74.7
Q ss_pred HHcCCHHHHHHHHHhhhhccCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA 279 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~ 279 (441)
+.+|+|++|...|++.+...+.. +++..-+|.+|..+|+|++|...|++++.-+ . +++. .
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P---~s~~-----------~ 216 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---P---KSPK-----------A 216 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---C---CCcc-----------h
Confidence 45899999999999999954433 5677888999999999999999999999873 1 1111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 280 LAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
..++..+|.+|..+|++++|...|++.+..+
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2468899999999999999999999988754
No 142
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.91 E-value=4.2e-05 Score=79.69 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
..+.+|||.+|..+|+|++|...|++||++ .|+|+....+++|+|.+|..+|++++| ...|++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEA------la~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKA------ADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHh
Confidence 457899999999999999999999999998 477777778899999999999999987 8999999997
No 143
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.89 E-value=0.0062 Score=67.76 Aligned_cols=262 Identities=15% Similarity=0.106 Sum_probs=162.6
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHH------HHhhhhhhhh------------------hHHHHH---H----H
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKV------ENFKNSILGV------------------RVAAME---A----L 152 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra------l~i~~~~lg~------------------~~~al~---~----L 152 (441)
++.....+.+=+.-+...|.-++|+++--+| -++.+.. |. ....+. . -
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~-~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~ 421 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQL-EWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQ 421 (894)
T ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhh-hhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHH
Confidence 4555666777777778888888888776543 2222111 10 000000 0 1
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc--cC--CchH-
Q 013549 153 AGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE--EG--CTGS- 227 (441)
Q Consensus 153 a~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~--~~--~~~~- 227 (441)
+.....+++++++..+..++..-..... ......+.....++.+.+.+.+|+++.|+++-+.++.. +. ....
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~---~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPM---HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCc---ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 3345678899999888877754443321 11124555556778899999999999999999999992 11 1112
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
.....+.+.+.+|+|++|..+.+++.++.+.... .+..+.+.+--+.+...||+-..|+. +++.
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~--------------~~l~~~~~~~~s~il~~qGq~~~a~~--~~~~ 562 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDV--------------YHLALWSLLQQSEILEAQGQVARAEQ--EKAF 562 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHHHHHhhHHHHHHH--HHHH
Confidence 2345688999999999999999999999643221 22345567788999999994433333 3344
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHH
Q 013549 308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 387 (441)
Q Consensus 308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yae 387 (441)
...+...++.-|.-+-.+---+.++...-+++.+ +.-.+..+++.....+..-+.--.+.+++.++..+|++++
T Consensus 563 ~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~------~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 563 NLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLA------EAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhh------hHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH
Confidence 4444445555555444444444555555556654 6666777777643222111122233578999999999999
Q ss_pred HHHH
Q 013549 388 ALSV 391 (441)
Q Consensus 388 al~~ 391 (441)
|...
T Consensus 637 A~~~ 640 (894)
T COG2909 637 ALAQ 640 (894)
T ss_pred HHHH
Confidence 8654
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.87 E-value=0.0013 Score=62.00 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
.+..+-+.|.... ..|+|.+|+..|++..... |.+|....+...+|..++.+|+|.+|+..+++-+...+.
T Consensus 4 ~~~~lY~~a~~~~----~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 4 TAEALYQKALEAL----QQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp -HHHHHHHHHHHH----HCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3445556666652 3689999999999999866 678889999999999999999999999999999988877
Q ss_pred hhhhhHHHHHHHHHHHHhcCC-----------cchhHHHHHHHHHHHHhcCCCc-ch-hhhhhHhHHH-------HHHHH
Q 013549 141 ILGVRVAAMEALAGLYLQLGQ-----------DDTSSVVADKCLQLCEKHKPEN-YK-TYGAVNSRAN-------AVKGL 200 (441)
Q Consensus 141 ~lg~~~~al~~La~l~~~~G~-----------~~~A~~l~~~~L~i~~~~~~~~-~~-~~~~l~~~a~-------al~gl 200 (441)
+.-. ..++.-++..+..+.+ ..+|...++..+ +..|.. +. ++........ .-.+.
T Consensus 75 ~~~~-~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li----~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 75 SPKA-DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI----KRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp -TTH-HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH----HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccch-hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH----HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6322 2344444444443321 113333333332 333222 11 1111000000 11356
Q ss_pred HHHHcCCHHHHHHHHHhhhhccCCch---HHHHHHHHHHHHccChHHHH
Q 013549 201 VELAHGNLESAESFFKGLQEEEGCTG---SAALSYGEYLHATRNFLLAK 246 (441)
Q Consensus 201 ~~~~qG~y~eAe~l~~~aL~~~~~~~---~~a~~~a~~~~~qG~y~eA~ 246 (441)
.|...|+|..|..-|+.+++.-+.+. .+...+...|...|..+.|.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 67789999999999999999655443 44556688888999888554
No 145
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.87 E-value=0.00032 Score=75.47 Aligned_cols=129 Identities=10% Similarity=0.055 Sum_probs=88.8
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHhhhhccCCchHHHHHHHHHHHHc--------cChHHHHHHHHHHHHHHHhhcccCC
Q 013549 196 AVKGLVELAHGN---LESAESFFKGLQEEEGCTGSAALSYGEYLHAT--------RNFLLAKKFYQKVIEVLAEQKDFSD 264 (441)
Q Consensus 196 al~gl~~~~qG~---y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q--------G~y~eA~~ly~rAL~i~~~~~~~~~ 264 (441)
.+.|.-++.+++ +++|..+|+++++.++....+.-.++.++..+ ++..+|....++++++. ..
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~---~~--- 416 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP---EL--- 416 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc---cC---
Confidence 355666655554 88999999999996655543333333333222 23345555555555441 11
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549 265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 344 (441)
Q Consensus 265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~ 344 (441)
.. ...++.-+|..+..+|++++|+..|+||+.+. |+ +..+..+|.+|..+|++++|
T Consensus 417 --~~----------~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA--- 472 (517)
T PRK10153 417 --NV----------LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLA--- 472 (517)
T ss_pred --cC----------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHH---
Confidence 00 11235567888888999999999999999987 55 67999999999999999987
Q ss_pred HHHHHHHHHHHHH
Q 013549 345 LIQEGLYRRALEF 357 (441)
Q Consensus 345 ~~Ae~ly~rAL~i 357 (441)
...|++|+.+
T Consensus 473 ---~~~~~~A~~L 482 (517)
T PRK10153 473 ---ADAYSTAFNL 482 (517)
T ss_pred ---HHHHHHHHhc
Confidence 8999999765
No 146
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.86 E-value=0.0011 Score=71.25 Aligned_cols=222 Identities=17% Similarity=0.151 Sum_probs=149.7
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~ 159 (441)
+.|...+...++.|. .+|..+.++.-.|..+...|+-+||-++....+.....+
T Consensus 21 kQYkkgLK~~~~iL~--------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S------------------ 74 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK--------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS------------------ 74 (700)
T ss_pred HHHHhHHHHHHHHHH--------hCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc------------------
Confidence 345555555555554 345556677778888888888888877766543322111
Q ss_pred CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT 239 (441)
Q Consensus 160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q 239 (441)
.-| | ...|+++..-.+|++|+++|+.||..++....+...++.+...+
T Consensus 75 ----------~vC-----------w-----------Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 75 ----------HVC-----------W-----------HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM 122 (700)
T ss_pred ----------chh-----------H-----------HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 011 2 24588888899999999999999997777767777777777778
Q ss_pred cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549 240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 319 (441)
Q Consensus 240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP 319 (441)
|+|+-...--.+-|+.. .+ .-++...++..+.-.|+|..|.+..+.-..-.+ .-|
T Consensus 123 Rd~~~~~~tr~~LLql~---~~-----------------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-----~~~ 177 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLR---PS-----------------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-----TSP 177 (700)
T ss_pred HhhhhHHHHHHHHHHhh---hh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCC
Confidence 99988777777767662 11 124567888899999999999888776555544 456
Q ss_pred hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 320 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 320 ~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
+.-..=.....+|+.|-..+. +.++.|+++.....+.--+-.......+.++...+++++|..++
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~--------g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEA--------GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHc--------ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 666666667788888765543 44888988874322222222334445667778888888887765
No 147
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.83 E-value=0.00095 Score=72.44 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHh---------hCCCCchHH-HHHHHHHHHHHHhhchhhhh
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEIL------TRTLTKTEEL---------FGSHHPKVG-VVLTCLALMFRNKAMQEHSS 342 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~------~rAL~i~e~~---------lG~~HP~va-~~l~nLa~ly~~qG~~eeA~ 342 (441)
++..+..-++=+..+|+|.|||.+| .+|+.+|.+. .|..||+.. .+.-.+|.-|...|+...|
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaa- 901 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAA- 901 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHH-
Confidence 3445567788888999999999998 5788888764 577888855 6788899999999997765
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchhhHHHHHHHHHHHHHh
Q 013549 343 ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWR 411 (441)
Q Consensus 343 ~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~~eae~~~~~a~~~~~ 411 (441)
|..|-+|-+.. ..+| +|.+.+.+.+|..+- |..-|+.|.+...-+|.
T Consensus 902 -----e~~flea~d~k-----------aavn----myk~s~lw~dayria--ktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 902 -----EEHFLEAGDFK-----------AAVN----MYKASELWEDAYRIA--KTEGGANAEKHVAFLWA 948 (1636)
T ss_pred -----HHHHHhhhhHH-----------HHHH----HhhhhhhHHHHHHHH--hccccccHHHHHHHHHH
Confidence 77776664432 1222 566777777776653 12224556555555553
No 148
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.80 E-value=0.0055 Score=65.97 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh-----------------
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ----------------- 259 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~----------------- 259 (441)
+++..|...|+|++|..+.+++|...|.....-..-|.+|...|++.+|...++.|-.+=...
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH
Confidence 445556689999999999999999766666666677999999999999999888776430000
Q ss_pred -------cccCCCCCccccccchhHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 260 -------KDFSDMNTLGSCNMALEEV-ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 260 -------~~~~~~~~lg~~~~~~~~~-~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
..|..++. ++... ..++ -++....-|..|..+|+|..|...|...+.+++...-+
T Consensus 279 e~A~~~~~~Ftr~~~-~~~~~-L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D 341 (517)
T PF12569_consen 279 EEAEKTASLFTREDV-DPLSN-LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED 341 (517)
T ss_pred HHHHHHHHhhcCCCC-CcccC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 00001111 11111 1111 12334678999999999999999999999999988653
No 149
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.80 E-value=0.00046 Score=64.18 Aligned_cols=116 Identities=13% Similarity=0.184 Sum_probs=87.5
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhc-cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 199 GLVELAHGNLESAESFFKGLQEE-EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~-~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
+.+....|+|.||+++|++++.+ ....+...++++......+++.+|.+..++..+- . +.. .+|+
T Consensus 96 a~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~---~------pa~----r~pd- 161 (251)
T COG4700 96 ANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY---N------PAF----RSPD- 161 (251)
T ss_pred HHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc---C------Ccc----CCCC-
Confidence 44445799999999999999994 3334556788999999999999999999887665 1 111 1122
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
.+.-+|.+|..+|+|.+||.-|+.+++-+- -|.-... -+....+||+.++|
T Consensus 162 ----~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~ar~~---Y~e~La~qgr~~ea 212 (251)
T COG4700 162 ----GHLLFARTLAAQGKYADAESAFEVAISYYP------GPQARIY---YAEMLAKQGRLREA 212 (251)
T ss_pred ----chHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHHHHHH---HHHHHHHhcchhHH
Confidence 256889999999999999999999998652 1222223 35888999998887
No 150
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=0.0005 Score=74.66 Aligned_cols=204 Identities=17% Similarity=0.147 Sum_probs=130.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHH---------HHHhcC-
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ---------LCEKHK- 180 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~---------i~~~~~- 180 (441)
---++.++.+.|--.+|+..|+|- ..|...+.+|...|+..+|+....+-++ +++...
T Consensus 401 q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhcc
Confidence 344666777778778887777763 1344445555566655555444333221 000000
Q ss_pred -CCcch----hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 181 -PENYK----TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 181 -~~~~~----~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
+.-|+ -......+++.-.|.....+++|+++..+|++++...+-...+.+++|.+....+++..|...|.+.+..
T Consensus 469 d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred ChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 00000 0112222222222333345788888888888888866656667788888888888888888888888876
Q ss_pred HHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549 256 LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 335 (441)
Q Consensus 256 ~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q 335 (441)
. |++ ..+-|||+..|...|+-.+|-..+++||+-. -+|+.+=..+. .+-..-
T Consensus 549 ---~---------------Pd~--~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-----~~~w~iWENym---lvsvdv 600 (777)
T KOG1128|consen 549 ---E---------------PDN--AEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-----YQHWQIWENYM---LVSVDV 600 (777)
T ss_pred ---C---------------CCc--hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-----CCCCeeeechh---hhhhhc
Confidence 1 111 2357888888888888888888888888654 67888776666 566777
Q ss_pred hchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 336 AMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 336 G~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
|.+++| ...|.|-+++.+.
T Consensus 601 ge~eda------~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 601 GEFEDA------IKAYHRLLDLRKK 619 (777)
T ss_pred ccHHHH------HHHHHHHHHhhhh
Confidence 887776 7888888888754
No 151
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.79 E-value=0.013 Score=59.13 Aligned_cols=226 Identities=12% Similarity=0.104 Sum_probs=157.0
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..|.|..|+.-|..|.+ -.|.-=.++...|++|..+|+-.-|+.-+.+++.+.+.-.| +.-..+.+++
T Consensus 50 a~~Q~sDALt~yHaAve--------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~----ARiQRg~vll 117 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVE--------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA----ARIQRGVVLL 117 (504)
T ss_pred HhhhHHHHHHHHHHHHc--------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH----HHHHhchhhh
Confidence 35789999999999995 35667788999999999999999999999999999877544 3344577888
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhH--hHHHHHH--HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVN--SRANAVK--GLVELAHGNLESAESFFKGLQEEEGCTGSAALSYG 233 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~--~~a~al~--gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a 233 (441)
.+|++++|+.=++..|+---.... ..+.+.-+. .-...+. ..-+...|++..|+++..+.|..-+-....-.--+
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~-~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGL-VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcch-hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 999999999888877632111100 000000000 0000011 11234689999999999999986543333333347
Q ss_pred HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
.+|...|+...|+.-.+.|-.+ ... ....+..+.++++..|+..++..-.+++|.
T Consensus 197 kc~i~~~e~k~AI~Dlk~askL---s~D-----------------nTe~~ykis~L~Y~vgd~~~sL~~iRECLK----- 251 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKL---SQD-----------------NTEGHYKISQLLYTVGDAENSLKEIRECLK----- 251 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhc---ccc-----------------chHHHHHHHHHHHhhhhHHHHHHHHHHHHc-----
Confidence 7889999999999988887665 111 123578999999999999999888887775
Q ss_pred hCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 314 FGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 314 lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
|.|+|-.--..+-.|-.+-......+++
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7899987766666666555544444443
No 152
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.77 E-value=0.0053 Score=66.14 Aligned_cols=277 Identities=16% Similarity=0.185 Sum_probs=164.7
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|++.+-+..|..|.....-. ..+-+..+....+|.+|..-|+.+.|...++++..+--..+..-...|-+-+..-+.
T Consensus 360 e~~~~~~i~tyteAv~~vdP~--ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPK--KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred cCChHHHHHHHHHHHHccCcc--cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 466788888888887633111 124456778899999999999999999999999776654432222334334433333
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHH-HHHH-----HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA-NAVK-----GLVELAHGNLESAESFFKGLQEEEGCTGSAALSY 232 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a-~al~-----gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~ 232 (441)
..+.+.|..+.+++..+=....-..+++......+. +++. .-+.-..|-++.-...|.+.++-.-.++....||
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 334444444444443220000000011112222221 1221 1222368888889999999999767788899999
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTKTE 311 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~-al~nLg~ly~~qG~y~eAe~l~~rAL~i~e 311 (441)
|.++..-.-|++|...|+|-+.++ + -+..+ .+. ++..-..--..--+.+.|..+|+|||+..
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LF---k---~p~v~----------diW~tYLtkfi~rygg~klEraRdLFEqaL~~C- 580 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLF---K---WPNVY----------DIWNTYLTKFIKRYGGTKLERARDLFEQALDGC- 580 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccC---C---CccHH----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence 999999999999999999999884 1 11111 112 11111111222347889999999999832
Q ss_pred HhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cCCCCCcchHhhhccHHH-----H---HHHh
Q 013549 312 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDI-----V---ALAR 382 (441)
Q Consensus 312 ~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~~~~~~~~~~~l~nl~~-----~---~~~~ 382 (441)
| |.-+.++. .+|.. +||= -+|-++|++|++ +...-++.-.-.+.|+=+ + ...+
T Consensus 581 ----p--p~~aKtiy---LlYA~---lEEe------~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR 642 (835)
T KOG2047|consen 581 ----P--PEHAKTIY---LLYAK---LEEE------HGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTR 642 (835)
T ss_pred ----C--HHHHHHHH---HHHHH---HHHH------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 2 66666665 55643 4442 689999999985 333334432222223221 1 2356
Q ss_pred ccHHHHHHHh
Q 013549 383 GGYAEALSVQ 392 (441)
Q Consensus 383 g~yaeal~~~ 392 (441)
+-|.+|+..-
T Consensus 643 ~iYekaIe~L 652 (835)
T KOG2047|consen 643 EIYEKAIESL 652 (835)
T ss_pred HHHHHHHHhC
Confidence 7788887764
No 153
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=0.00038 Score=72.62 Aligned_cols=114 Identities=18% Similarity=0.099 Sum_probs=90.2
Q ss_pred HHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHH
Q 013549 200 LVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA 279 (441)
Q Consensus 200 l~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~ 279 (441)
+.++..|++++|++.++..++..+..+......+.++...+++.+|.+.+++++... ++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------P~~------------ 373 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--------PNS------------ 373 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCc------------
Confidence 445568889999999999888666555555556889999999999999999999871 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
..--.|+|++|...|++++|+..+.+.+. +.|+-...+.-||..|..||+..++
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHH
Confidence 01236999999999999999998887763 5677777888888999999987776
No 154
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.75 E-value=0.014 Score=50.96 Aligned_cols=196 Identities=22% Similarity=0.229 Sum_probs=141.5
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH-HH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAG-LY 156 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~-l~ 156 (441)
..+.+.+++..++..+.. ...+.....+..++..+...++|.++++.+..++........ ....... ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 140 (291)
T COG0457 71 KLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL----AEALLALGAL 140 (291)
T ss_pred HcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch----HHHHHHHHHH
Confidence 356788999999888865 245678889999999999999999999999998765543211 1111222 78
Q ss_pred HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-chHHHHHHHHH
Q 013549 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC-TGSAALSYGEY 235 (441)
Q Consensus 157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~-~~~~a~~~a~~ 235 (441)
...|+++.+...+.+++.+..... .. .... ...+..+...|++++|...+.+++...+. ......+++..
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~--~~--~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELN--EL--AEAL-----LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcc--ch--HHHH-----HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHH
Confidence 889999999999988854111000 00 0011 01222256799999999999999995544 45566778889
Q ss_pred HHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 236 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 236 ~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
+..+|++.+|...+.+++... .. .......++..+...|++++|...+.+++.....
T Consensus 212 ~~~~~~~~~a~~~~~~~~~~~---~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 212 YLKLGKYEEALEYYEKALELD---PD-----------------NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhC---cc-----------------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999882 11 0123567777777888899999999999988776
No 155
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.75 E-value=0.019 Score=56.82 Aligned_cols=136 Identities=15% Similarity=0.096 Sum_probs=94.9
Q ss_pred cChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhhhhh-----h-----hhh
Q 013549 77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENFKNSI-----L-----GVR 145 (441)
Q Consensus 77 ~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG-~y~eA~e~~~ral~i~~~~-----l-----g~~ 145 (441)
+.+|+++.|..++.|+-..........-..++..+.|+|.-...++ +|++|...++++.++.+.. . ..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3579999999999999987754444556679999999999999999 9999999999999986441 1 123
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Q 013549 146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE 221 (441)
Q Consensus 146 ~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~ 221 (441)
...+..|+..|.+.+.++-... +.+.++..+...+.++ .........+ ...++.++++..+.+.+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~~~---~~~~L~l~il-----~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGNKP---EVFLLKLEIL-----LKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCCCc---HHHHHHHHHH-----hccCChhHHHHHHHHHHHh
Confidence 4577778888988776643222 3444444555554322 1111111111 2378999999999999883
No 156
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.73 E-value=0.0016 Score=70.83 Aligned_cols=137 Identities=12% Similarity=-0.015 Sum_probs=104.5
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHH
Q 013549 154 GLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYG 233 (441)
Q Consensus 154 ~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a 233 (441)
.+....+++.++-+.++.++++..-+.. ... ..|-+.+..+++..|-..|.+++..++.+..+.+|++
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~nplq~~-------~wf-----~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls 560 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINPLQLG-------TWF-----GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS 560 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCccchh-------HHH-----hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence 3334457777777766666544322221 111 2466778999999999999999998888889999999
Q ss_pred HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
..|...|+-.+|--.+++||.- +.. |. ..--|.-.+..+.|.+++|.+.|.|-+.+....
T Consensus 561 ~ayi~~~~k~ra~~~l~EAlKc---n~~----------~w-------~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 561 TAYIRLKKKKRAFRKLKEALKC---NYQ----------HW-------QIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhc---CCC----------CC-------eeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999976 211 11 112477778899999999999999999999998
Q ss_pred hCCCCchHH
Q 013549 314 FGSHHPKVG 322 (441)
Q Consensus 314 lG~~HP~va 322 (441)
..++||...
T Consensus 621 ~d~~vl~~i 629 (777)
T KOG1128|consen 621 KDDEVLLII 629 (777)
T ss_pred ccchhhHHH
Confidence 877776543
No 157
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.73 E-value=6.5e-05 Score=50.97 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
++++||.+|..+|+|++|+++|+++|.+.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 47899999999999999999999999888764
No 158
>PRK15331 chaperone protein SicA; Provisional
Probab=97.72 E-value=0.00029 Score=64.32 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=70.1
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
..+|+|++|+.+|+-..--.+....-...+|.+++.+|+|++|+++|-.|..+ .+. .+. .
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---~~~-----dp~------------p 107 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL---LKN-----DYR------------P 107 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccC-----CCC------------c
Confidence 47999999999998766633334455688999999999999999999999988 222 111 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
....|+.|..+|+.++|+..|+.+++
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 46889999999999999999999988
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.70 E-value=0.0029 Score=61.61 Aligned_cols=171 Identities=15% Similarity=0.133 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~ 186 (441)
....+...|..+...|+|++|++.|++.+...+.. .....+...++.+|..+++|++|...+++.++.. |.++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----P~~~~~ 105 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----PTHPNI 105 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----cCCCch
Confidence 45667888999999999999999999998887754 2233456789999999999999999999887544 322211
Q ss_pred hhhhHhHHHHHHHHHHHHcC------------------CHHHHHHHHHhhhhccCCch---H-----------H---HHH
Q 013549 187 YGAVNSRANAVKGLVELAHG------------------NLESAESFFKGLQEEEGCTG---S-----------A---ALS 231 (441)
Q Consensus 187 ~~~l~~~a~al~gl~~~~qG------------------~y~eAe~l~~~aL~~~~~~~---~-----------~---a~~ 231 (441)
..+....|+.+...+ ...+|..-|++.++..|... . . -..
T Consensus 106 -----~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ 180 (243)
T PRK10866 106 -----DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELS 180 (243)
T ss_pred -----HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 122233454432222 23567788888888433221 0 0 123
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549 232 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 232 ~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~ 304 (441)
.|..|...|+|.-|..=++.+++-. .+ .+. .-.++.-|...|..+|.-++|.+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Y---p~---t~~-----------~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDY---PD---TQA-----------TRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHC---CC---Cch-----------HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5778999999999999999888763 11 111 22478899999999999999987653
No 160
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.66 E-value=0.00094 Score=61.93 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCc
Q 013549 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD 162 (441)
Q Consensus 83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~ 162 (441)
++-+.-++.-|...++.+|++ ++-+.+..+|..|.+.|++++|++.|.++.+-+.. .+.....+-++..+....|++
T Consensus 13 ~~~~~~Le~elk~~~~n~~ke--sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 13 AEELEKLEAELKDAKSNLGKE--SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCH
Confidence 344556666666666666554 69999999999999999999999999998776544 455556677788888889999
Q ss_pred chhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Q 013549 163 DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG 223 (441)
Q Consensus 163 ~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~ 223 (441)
.....+..++-.+.+..++ | ....+.+...|++++.+|+|.+|-.+|-.++.+..
T Consensus 90 ~~v~~~i~ka~~~~~~~~d--~----~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEKGGD--W----ERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHHHhccch--H----HHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 9999999998777766442 2 34455566789999999999999999999988543
No 161
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.024 Score=62.72 Aligned_cols=170 Identities=19% Similarity=0.227 Sum_probs=96.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHH
Q 013549 115 STLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA 194 (441)
Q Consensus 115 a~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a 194 (441)
|.+-...|..+||+.+|.+. ++ ..-|.-+|..+|.+++|..+ .+....+|.. .+...++
T Consensus 807 AvLAieLgMlEeA~~lYr~c----kR--------~DLlNKlyQs~g~w~eA~ei-------AE~~DRiHLr--~Tyy~yA 865 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQC----KR--------YDLLNKLYQSQGMWSEAFEI-------AETKDRIHLR--NTYYNYA 865 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHH----HH--------HHHHHHHHHhcccHHHHHHH-------Hhhccceehh--hhHHHHH
Confidence 44445556666666666653 11 11133456677776555443 3333322210 1111222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhh----------ccC-Cc--------hHHHHH-HHHHHHHccChHHHHHHHHHHHH
Q 013549 195 NAVKGLVELAHGNLESAESFFKGLQE----------EEG-CT--------GSAALS-YGEYLHATRNFLLAKKFYQKVIE 254 (441)
Q Consensus 195 ~al~gl~~~~qG~y~eAe~l~~~aL~----------~~~-~~--------~~~a~~-~a~~~~~qG~y~eA~~ly~rAL~ 254 (441)
+.| -..|+.+.|.++|+++-. ..+ .. .....+ +|..+.++|+.+-|+.+|..|-+
T Consensus 866 ~~L-----ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 866 KYL-----EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHH-----HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 221 257888999999998744 111 00 112233 47778899999999999999988
Q ss_pred HHHhhcccCCCCCcccccc----chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 255 VLAEQKDFSDMNTLGSCNM----ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 255 i~~~~~~~~~~~~lg~~~~----~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
-+...+- +-..|.... ..+.-..++-+.||.-|.++|++.+|..+|+||-..-..+
T Consensus 941 ~fs~VrI---~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAI 1000 (1416)
T KOG3617|consen 941 YFSMVRI---KCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAI 1000 (1416)
T ss_pred hhhheee---EeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7643321 111221000 0000123455689999999999999999999987765555
No 162
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.66 E-value=0.0022 Score=64.67 Aligned_cols=218 Identities=11% Similarity=0.118 Sum_probs=154.0
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..|++.-|+++..+.|+|. |.-+..+-..+..|...|+...||.-.+.+.++.... ....+.+..+++
T Consensus 167 ~~GD~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn----Te~~ykis~L~Y 234 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN----TEGHYKISQLLY 234 (504)
T ss_pred cCCchhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc----hHHHHHHHHHHH
Confidence 4689999999999999876 4457778888999999999999999999887765433 346788889999
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhh---hhhHhHHHHHHH-HHHHHcCCHHHHHHHHHhhhhccCCchHHHH---
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTY---GAVNSRANAVKG-LVELAHGNLESAESFFKGLQEEEGCTGSAAL--- 230 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~---~~l~~~a~al~g-l~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~--- 230 (441)
..|+...++...+.||++- |+|..=. ..+....+.+.. -....+++|.++..-++++++.++.....-.
T Consensus 235 ~vgd~~~sL~~iRECLKld----pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLD----PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred hhhhHHHHHHHHHHHHccC----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 9999999988888887542 2221100 111111111211 1123689999999999999996654322211
Q ss_pred -HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 231 -SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 231 -~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
.+..++..-|++.||+.-..++|++- |+ .+.+++.-|..|.--..||+|+.-|++|++.
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~d------------------~~--dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDID------------------PD--DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhcC------------------ch--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 23445667899999999999999981 11 2567899999999999999999999999875
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549 310 TEELFGSHHPKVGVVLTCLALMFRNKA 336 (441)
Q Consensus 310 ~e~~lG~~HP~va~~l~nLa~ly~~qG 336 (441)
- ++|-.+-.-+..--.+...-|
T Consensus 371 n-----~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 371 N-----ESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred C-----cccHHHHHHHHHHHHHHHHhc
Confidence 4 455555555543333433333
No 163
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0026 Score=64.33 Aligned_cols=252 Identities=16% Similarity=0.124 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~ 159 (441)
-+|.-|+.++|-.+.. +.+.. -.+-.-+|..+++.|+|++|...|.-...-. ......+-+|+-++..+
T Consensus 36 rDytGAislLefk~~~-----~~EEE--~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~----~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNL-----DREEE--DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD----DAPAELGVNLACCKFYL 104 (557)
T ss_pred ccchhHHHHHHHhhcc-----chhhh--HHHHHHHHHHHHhhccHHHHHHHHHHHhccC----CCCcccchhHHHHHHHH
Confidence 4688999999998843 22322 4556678999999999999999998764411 11122345788888888
Q ss_pred CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT 239 (441)
Q Consensus 160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q 239 (441)
|.|.+|.....+| .. ..+..| .+..+++ ..|+=++=.. |.+.|.+ +..--+++|.+.+.+
T Consensus 105 g~Y~eA~~~~~ka-------~k------~pL~~R--Llfhlah-klndEk~~~~-fh~~LqD---~~EdqLSLAsvhYmR 164 (557)
T KOG3785|consen 105 GQYIEAKSIAEKA-------PK------TPLCIR--LLFHLAH-KLNDEKRILT-FHSSLQD---TLEDQLSLASVHYMR 164 (557)
T ss_pred HHHHHHHHHHhhC-------CC------ChHHHH--HHHHHHH-HhCcHHHHHH-HHHHHhh---hHHHHHhHHHHHHHH
Confidence 9998887665544 11 123222 1222222 3444333223 3333321 112236788888899
Q ss_pred cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549 240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 318 (441)
Q Consensus 240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~-nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H 318 (441)
-.|.||++.|.|+|.- .+. . .++| ++|..|.++.-|+-+-+. |+.+-+ .|
T Consensus 165 ~HYQeAIdvYkrvL~d---n~e-----y-------------~alNVy~ALCyyKlDYydvsqev----l~vYL~----q~ 215 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQD---NPE-----Y-------------IALNVYMALCYYKLDYYDVSQEV----LKVYLR----QF 215 (557)
T ss_pred HHHHHHHHHHHHHHhc---Chh-----h-------------hhhHHHHHHHHHhcchhhhHHHH----HHHHHH----hC
Confidence 9999999999998854 222 2 2344 899999999999987654 445554 45
Q ss_pred chHHHHHHHHHHHHHH--hhchhhh----------hhhHHHHHHHHHHHHHhhcCCCC----Ccch----HhhhccHHHH
Q 013549 319 PKVGVVLTCLALMFRN--KAMQEHS----------SALLIQEGLYRRALEFLKAPPLE----SEGV----ETKVDRTDIV 378 (441)
Q Consensus 319 P~va~~l~nLa~ly~~--qG~~eeA----------~~~~~Ae~ly~rAL~i~~~~~~~----~~~~----~~~l~nl~~~ 378 (441)
|+.-...|-.+-...+ .|+..++ ++|.+++.+.+--|-+++- +.+ -|+. -..--|+.+-
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn-gEgALqVLP~L~~~IPEARlNL~iY 294 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN-GEGALQVLPSLMKHIPEARLNLIIY 294 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC-CccHHHhchHHHhhChHhhhhheee
Confidence 5544444433332222 2333322 2233455555544443321 111 1221 1222377788
Q ss_pred HHHhccHHHHHHHh
Q 013549 379 ALARGGYAEALSVQ 392 (441)
Q Consensus 379 ~~~~g~yaeal~~~ 392 (441)
|+.|++..||..+-
T Consensus 295 yL~q~dVqeA~~L~ 308 (557)
T KOG3785|consen 295 YLNQNDVQEAISLC 308 (557)
T ss_pred ecccccHHHHHHHH
Confidence 99999999997753
No 164
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.65 E-value=0.0029 Score=66.20 Aligned_cols=147 Identities=16% Similarity=0.027 Sum_probs=106.0
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHH
Q 013549 150 EALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAA 229 (441)
Q Consensus 150 ~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a 229 (441)
+..+--+++.|+++.|+..++..+ +..|.. .....+.+-+++..+++++|.+.|+++++-.+..+..-
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~----~~~P~N--------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLI----AAQPDN--------PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHH----HhCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHH
Confidence 344444666777777776666532 222211 12233567778899999999999999999666557778
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
.+||.+|...|++.+|+...++.+.- . +.. | ....-||+.|..+|+-.+|..
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~---~-----p~d-------p-----~~w~~LAqay~~~g~~~~a~~-------- 429 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFN---D-----PED-------P-----NGWDLLAQAYAELGNRAEALL-------- 429 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc---C-----CCC-------c-----hHHHHHHHHHHHhCchHHHHH--------
Confidence 99999999999999999888886643 1 111 1 246789999999999887754
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 310 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 310 ~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
..|..|...|++++| ..++.+|.+-.+
T Consensus 430 -----------------A~AE~~~~~G~~~~A------~~~l~~A~~~~~ 456 (484)
T COG4783 430 -----------------ARAEGYALAGRLEQA------IIFLMRASQQVK 456 (484)
T ss_pred -----------------HHHHHHHhCCCHHHH------HHHHHHHHHhcc
Confidence 446778899999987 677777766654
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.63 E-value=0.0017 Score=60.50 Aligned_cols=132 Identities=19% Similarity=0.179 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
-...||..+-+.|+|.||+++|++++.-- +..+...+-.++......++..++....++..+ .++.--.-...
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~---fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e----~~pa~r~pd~~ 163 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGI---FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME----YNPAFRSPDGH 163 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccc---cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh----cCCccCCCCch
Confidence 35678889999999999999999997543 223344555666666677777777666655432 22110000011
Q ss_pred hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 190 VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
+ +.+.++..+|+|++|+.-|+.+++.-+ -+..-.-|++.+-+||+.+||..-|....+-
T Consensus 164 L------l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 L------LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred H------HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2 456677799999999999999999433 2234567899999999999999888776655
No 166
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.60 E-value=0.027 Score=62.93 Aligned_cols=240 Identities=13% Similarity=0.014 Sum_probs=153.9
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchh----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh-hhhhHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESW----RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-LGVRVAAMEAL 152 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~----~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~-lg~~~~al~~L 152 (441)
++.+|+||..+..+........ .|+. .|.-..--|.+...+|+.++|+.+.+.++...+.. ...++..+.++
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~---~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAP---MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcC---cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 6789999999999987755331 2222 22222233556778999999999999997665432 22345566778
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC--HHHHHHHHHhhhh----ccCCch
Q 013549 153 AGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN--LESAESFFKGLQE----EEGCTG 226 (441)
Q Consensus 153 a~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~--y~eAe~l~~~aL~----~~~~~~ 226 (441)
+.+..-.|++++|..+...+.++.......+ +...+......+...||+ |++.+.-|...-. ..+.++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~------l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYH------LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 8888889999999999999988877666422 112222233455568994 4444544544333 223334
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
-.....+.++...-++++++.-..+.+++.... . .++. ..-..+++|+.++.-+|++++|-....+.
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~---------~---~~~~-~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY---------T---PQPL-LSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc---------c---cchh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455667778888777999999888888873111 1 0111 11123469999999999999998887776
Q ss_pred HHHHHHhhCCCCchHHHHHHHHH-HHHHHhhchhhh
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLA-LMFRNKAMQEHS 341 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa-~ly~~qG~~eeA 341 (441)
......- ..|++.-...+-.. .+...||+++++
T Consensus 645 ~~l~~~~--~~~~~~~a~~~~v~~~lwl~qg~~~~a 678 (894)
T COG2909 645 ERLLLNG--QYHVDYLAAAYKVKLILWLAQGDKELA 678 (894)
T ss_pred HHHhcCC--CCCchHHHHHHHhhHHHhcccCCHHHH
Confidence 5554332 14666444444333 344567888776
No 167
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00024 Score=72.67 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=81.8
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
|+.|...|+|..|...|+||+..+.....+..+. ..-.....+.+++||+.+|..+++|.+|++...++|.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee-----~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--- 286 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEE-----QKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--- 286 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHH-----HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 6678899999999999999999864333211100 00012234556789999999999999999999999874
Q ss_pred hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+++ -...|..-|..|..+|.|+.| ...|++|+++.
T Consensus 287 --~~~---N~KALyRrG~A~l~~~e~~~A------~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 --DPN---NVKALYRRGQALLALGEYDLA------RDDFQKALKLE 321 (397)
T ss_pred --CCC---chhHHHHHHHHHHhhccHHHH------HHHHHHHHHhC
Confidence 333 446788999999999999987 89999998874
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00013 Score=55.72 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=47.9
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
+.+|+|++|+.+|++++...+....+...++.+|..+|++++|+.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47899999999999999988878888899999999999999999999998865
No 169
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.49 E-value=0.00021 Score=48.49 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
++++||.+|.++|+|++|+++|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5899999999999999999999999877654
No 170
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.49 E-value=0.066 Score=58.17 Aligned_cols=277 Identities=18% Similarity=0.172 Sum_probs=145.2
Q ss_pred CCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Q 013549 101 QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK 180 (441)
Q Consensus 101 g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~ 180 (441)
|-+..+.=.+.++-+..+..++.++-|...|..+|.+.+..- ..|-..+.+-..-|.-++-+.++++++.-.-+..
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~----slWlra~~~ek~hgt~Esl~Allqkav~~~pkae 584 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK----SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE 584 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch
Confidence 355566777888888888889999999999988887765421 2333444444444555555555555542211110
Q ss_pred C-------CcchhhhhhHhHHHHHHHH-----------------HHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549 181 P-------ENYKTYGAVNSRANAVKGL-----------------VELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL 236 (441)
Q Consensus 181 ~-------~~~~~~~~l~~~a~al~gl-----------------~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~ 236 (441)
. +.|. +.++ .-+..+++. +....-+||+|..+|.++....+ +..+..-++.+.
T Consensus 585 ~lwlM~ake~w~-agdv-~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~e 661 (913)
T KOG0495|consen 585 ILWLMYAKEKWK-AGDV-PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLE 661 (913)
T ss_pred hHHHHHHHHHHh-cCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHH
Confidence 0 0000 0000 000111111 12235567777777777766322 334555566677
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
+.+|+.+||..+.+++|.++. .+ + -...-+|+++..+++.+.|.+-|.+-+.
T Consensus 662 r~ld~~eeA~rllEe~lk~fp---------~f---~--------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-------- 713 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFP---------DF---H--------KLWLMLGQIEEQMENIEMAREAYLQGTK-------- 713 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCC---------ch---H--------HHHHHHhHHHHHHHHHHHHHHHHHhccc--------
Confidence 777888888888877777631 00 0 1235677788888877777777765442
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHH--HHHhccHHHHHHHhhc
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIV--ALARGGYAEALSVQQN 394 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~--~~~~g~yaeal~~~~~ 394 (441)
.-|..-...--|+.+-..+|..-.| ...+.|+ -...|.. .+-+++.+ .+..|.-++|.....+
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rA------R~ildra-------rlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRA------RSILDRA-------RLKNPKN--ALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhH------HHHHHHH-------HhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2255444445555666666543333 3333333 1222221 11122222 2233444444333222
Q ss_pred hhhHH-HHHHHHHHHHH----hccChhHHHHhcccCCC
Q 013549 395 RKDEG-ERMKRWAEAAW----RNRRVSLAEALNFSEPS 427 (441)
Q Consensus 395 r~~ea-e~~~~~a~~~~----~~~r~~~~~~l~~~~~~ 427 (441)
...|- ..=.-|++++| .+++..--+||.+.++.
T Consensus 779 ALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~d 816 (913)
T KOG0495|consen 779 ALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHD 816 (913)
T ss_pred HHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCC
Confidence 11110 00113899998 46666777899888877
No 171
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.074 Score=56.00 Aligned_cols=240 Identities=14% Similarity=0.123 Sum_probs=152.1
Q ss_pred cCChHHHHHHHHHHHHhhhhhhh----------hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhh
Q 013549 121 SGNYVEAIEKLQKVENFKNSILG----------VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAV 190 (441)
Q Consensus 121 qG~y~eA~e~~~ral~i~~~~lg----------~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l 190 (441)
.|=|++|.++-.+++...+..-. ..+..+++++.+-.-.|++.+|+.-.....+...+... +.--...
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~--~~Llr~~ 365 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPT--PLLLRAH 365 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc--hHHHHHh
Confidence 35577777766666544332211 12457788888888899999987655555544433321 0000111
Q ss_pred HhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCchHHH--HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549 191 NSRANAVKGLVELAHGNLESAESFFKGLQE-EEGCTGSAA--LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 267 (441)
Q Consensus 191 ~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~~~~a--~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~ 267 (441)
....-.+.|++-..-|.|+.||..|..|.+ ++.....+. .|+|-+|-.+|+- +.+| ++++.. +..+.++
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~---ed~y-~~ld~i----~p~nt~s 437 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDA---EDLY-KALDLI----GPLNTNS 437 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccH---HHHH-HHHHhc----CCCCCCc
Confidence 111223678888899999999999999998 443332332 4567788887764 4444 455541 1011111
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 013549 268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 347 (441)
Q Consensus 268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~A 347 (441)
+. ..-.....+.--|...+.|++|.||..++.+.|++... - +..--|+-+|.-|+.++..-|+..|+
T Consensus 438 ~s-----sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana-e-d~~rL~a~~LvLLs~v~lslgn~~es------ 504 (629)
T KOG2300|consen 438 LS-----SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA-E-DLNRLTACSLVLLSHVFLSLGNTVES------ 504 (629)
T ss_pred ch-----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch-h-hHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence 11 11122334567788899999999999999999999721 1 12234778899999999999998876
Q ss_pred HHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhcc
Q 013549 348 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGG 384 (441)
Q Consensus 348 e~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~ 384 (441)
+...+-++..-++ .+|+|-...+..-+-.++.+-|.
T Consensus 505 ~nmvrpamqlAkK-i~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 505 RNMVRPAMQLAKK-IPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HhccchHHHHHhc-CCCchHHHHHHHHHHHHHHHhCc
Confidence 8889999998875 56777655444444455566554
No 172
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.047 Score=53.03 Aligned_cols=33 Identities=6% Similarity=0.033 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 315 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG 315 (441)
+...+.+|....+|+||-..+.+-..+..++--
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 345566666666666666666666666655533
No 173
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.012 Score=58.41 Aligned_cols=193 Identities=16% Similarity=0.224 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~ 159 (441)
-+|..|++++.--.+ ..|.+-..++-||..|+..-+|.+|-++|++.-.+.+..-.-+ +.. +.-.++.
T Consensus 24 ~ry~DaI~~l~s~~E--------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr---lY~-AQSLY~A 91 (459)
T KOG4340|consen 24 ARYADAIQLLGSELE--------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR---LYQ-AQSLYKA 91 (459)
T ss_pred hhHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH---HHH-HHHHHHh
Confidence 378899998776553 4565667789999999999999999999999654444321111 000 1111233
Q ss_pred CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT 239 (441)
Q Consensus 160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q 239 (441)
+.+..|+.+....+ + .+.+-.+..-+-.-+....|++.-+..+.++-... ....+.++.|.+...-
T Consensus 92 ~i~ADALrV~~~~~-------D-----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 92 CIYADALRVAFLLL-------D-----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKE 157 (459)
T ss_pred cccHHHHHHHHHhc-------C-----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheeecc
Confidence 44444433322111 0 01111111111122223556666665555544321 1223456677777888
Q ss_pred cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549 240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 319 (441)
Q Consensus 240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP 319 (441)
|+|++|.+-|+.|++. .|+ .+ ..-.|++..+...|+|+.|..+..+.++--- .+||
T Consensus 158 gqyEaAvqkFqaAlqv----sGy--qp--------------llAYniALaHy~~~qyasALk~iSEIieRG~----r~HP 213 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQV----SGY--QP--------------LLAYNLALAHYSSRQYASALKHISEIIERGI----RQHP 213 (459)
T ss_pred ccHHHHHHHHHHHHhh----cCC--Cc--------------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhh----hcCC
Confidence 8899998888888887 220 01 1136888888888888888888776554333 3666
Q ss_pred hHH
Q 013549 320 KVG 322 (441)
Q Consensus 320 ~va 322 (441)
..+
T Consensus 214 Elg 216 (459)
T KOG4340|consen 214 ELG 216 (459)
T ss_pred ccC
Confidence 543
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.0054 Score=66.15 Aligned_cols=138 Identities=12% Similarity=0.031 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchh-HHHHHHHHHHHHhcCCCcch
Q 013549 110 SLLAMSTLLYESG---NYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTS-SVVADKCLQLCEKHKPENYK 185 (441)
Q Consensus 110 ~l~nLa~l~~~qG---~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A-~~l~~~~L~i~~~~~~~~~~ 185 (441)
.+.--|.-|..++ .+.+|+.+|++|+++.+.- + .++-.++..|.....+... ..-..++.+...+..... .
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~-a---~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~-~ 415 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF-T---YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP-E 415 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc-H---HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc-c
Confidence 3334444444444 4889999999999888753 1 1222223333322222210 111123333333211100 0
Q ss_pred hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 186 TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 186 ~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
.....+.....++....+|++++|+..|++++...+. ..+...+|.++..+|++++|.+.|++|+.+
T Consensus 416 --~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 416 --LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred --CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 0111233334577777899999999999999996553 445566799999999999999999999987
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.40 E-value=0.00051 Score=53.12 Aligned_cols=59 Identities=24% Similarity=0.194 Sum_probs=52.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 286 LGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 286 Lg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
|..+|..+++|++|.+.+++++.+ +|+-...+...|.+|..+|++++| ...+++++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A------~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEA------LEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHH------HHHHHHHHHHC
Confidence 467899999999999999999998 677778888999999999999987 88899998663
No 176
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0066 Score=58.99 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
...++-+|.+. -|+.+-|..++.+-..-+ |..+. +.--=|..+...|.|++|++.|..-+.-.+-.
T Consensus 54 l~EqV~IAAld------~~~~~lAq~C~~~L~~~f-----p~S~R---V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~ 119 (289)
T KOG3060|consen 54 LYEQVFIAALD------TGRDDLAQKCINQLRDRF-----PGSKR---VGKLKAMLLEATGNYKEAIEYYESLLEDDPTD 119 (289)
T ss_pred HHHHHHHHHHH------hcchHHHHHHHHHHHHhC-----CCChh---HHHHHHHHHHHhhchhhHHHHHHHHhccCcch
Confidence 34555566664 245667777777655433 22323 33334678899999999999999876544432
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Q 013549 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE 221 (441)
Q Consensus 142 lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~ 221 (441)
..+ ...-..+...+|+-.+|..-....++.+..+.. .. .-+.-+|+..|+|++|.-+|++.+-.
T Consensus 120 ~v~----~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E-------AW-----~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 120 TVI----RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE-------AW-----HELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred hHH----HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH-------HH-----HHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 222 222233445679888888777777776644432 21 11345678999999999999999987
Q ss_pred cCCchHHHHHHHHHHHHcc---ChHHHHHHHHHHHHH
Q 013549 222 EGCTGSAALSYGEYLHATR---NFLLAKKFYQKVIEV 255 (441)
Q Consensus 222 ~~~~~~~a~~~a~~~~~qG---~y~eA~~ly~rAL~i 255 (441)
.|..+.-...||++++.+| ++.-|..+|.|||++
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7767777788999998887 667899999999999
No 177
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.04 Score=54.05 Aligned_cols=133 Identities=18% Similarity=0.124 Sum_probs=83.1
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhc-cCCch-HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 199 GLVELAHGNLESAESFFKGLQEE-EGCTG-SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~-~~~~~-~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
--+.+..-++|-|+...++.... +..+. ..+..+-.+....+++.+|.-+|+.-- .+ .. |
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s------~k------~~-----~- 205 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS------EK------TP-----P- 205 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh------cc------cC-----C-
Confidence 33445677788888877777773 22221 133333333334456666666665411 11 11 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
+...++..+.+...||+|+||+.+++.||.-. |....+|.|+=..-..+|+-.++ -.|-+.
T Consensus 206 --T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~~~Gkd~~~---------~~r~l~ 266 (299)
T KOG3081|consen 206 --TPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLALHLGKDAEV---------TERNLS 266 (299)
T ss_pred --ChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCChHH---------HHHHHH
Confidence 23457899999999999999999999999743 44466677777888889998765 234444
Q ss_pred HhhcCCCCCcch
Q 013549 357 FLKAPPLESEGV 368 (441)
Q Consensus 357 i~~~~~~~~~~~ 368 (441)
-++...|.||-+
T Consensus 267 QLk~~~p~h~~v 278 (299)
T KOG3081|consen 267 QLKLSHPEHPFV 278 (299)
T ss_pred HHHhcCCcchHH
Confidence 455556777753
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.30 E-value=0.00083 Score=51.92 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=51.1
Q ss_pred HHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 200 LVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 200 l~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
.+|..+++|++|...+++++..++........+|.++..+|+|++|...+++++++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35679999999999999999977777777888999999999999999999999987
No 179
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.28 E-value=0.044 Score=56.22 Aligned_cols=195 Identities=13% Similarity=0.110 Sum_probs=117.2
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-hHHHHHHH--HH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-RVAAMEAL--AG 154 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~-~~~al~~L--a~ 154 (441)
.+|+|.-|..-..+.++.. +.||.+ +.-.-.+|.++|+|.+...+..+.-+-.- ++. ...-+++. -+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-----pr~~~v---lrLa~r~y~~~g~~~~ll~~l~~L~ka~~--l~~~e~~~le~~a~~g 234 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-----PRHPEV---LRLALRAYIRLGAWQALLAILPKLRKAGL--LSDEEAARLEQQAWEG 234 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-----cCChHH---HHHHHHHHHHhccHHHHHHHHHHHHHccC--CChHHHHHHHHHHHHH
Confidence 4688999999999999744 677765 44566789999999999877655321110 110 11112221 12
Q ss_pred HHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh--------------
Q 013549 155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-------------- 220 (441)
Q Consensus 155 l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-------------- 220 (441)
+..+..+..-++.+ ..++ +... .+-.....+ ..-...-+...|++++|..+.+++|+
T Consensus 235 lL~q~~~~~~~~gL-~~~W---~~~p-r~lr~~p~l----~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l 305 (400)
T COG3071 235 LLQQARDDNGSEGL-KTWW---KNQP-RKLRNDPEL----VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL 305 (400)
T ss_pred HHHHHhccccchHH-HHHH---Hhcc-HHhhcChhH----HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhc
Confidence 22222222222221 1111 1111 000000011 00011223467777777777777766
Q ss_pred -----------------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549 221 -----------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 283 (441)
Q Consensus 221 -----------------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al 283 (441)
.++..+.....+|.++...+.|.+|...++.||... . .....
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~----~-----------------s~~~~ 364 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR----P-----------------SASDY 364 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC----C-----------------ChhhH
Confidence 233445566778999999999999999999988761 1 11246
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
+-||.++..+|+..+|++.++.+|..+..
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999966654
No 180
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.27 E-value=0.072 Score=57.92 Aligned_cols=64 Identities=23% Similarity=0.355 Sum_probs=45.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHH--------HHhhCCCCchHH--------------HHHHHHHHHHHHhhchhhhhhhHH
Q 013549 289 LEAHMGNFGDAEEILTRTLTKT--------EELFGSHHPKVG--------------VVLTCLALMFRNKAMQEHSSALLI 346 (441)
Q Consensus 289 ly~~qG~y~eAe~l~~rAL~i~--------e~~lG~~HP~va--------------~~l~nLa~ly~~qG~~eeA~~~~~ 346 (441)
+-...|.-++|+.+..|||+-+ |.++=..||.-- -+|.-+|.+++...++++|
T Consensus 762 ~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~ka----- 836 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKA----- 836 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH-----
Confidence 4556799999999999999743 344333333211 1455677999999999887
Q ss_pred HHHHHHHHHHHh
Q 013549 347 QEGLYRRALEFL 358 (441)
Q Consensus 347 Ae~ly~rAL~i~ 358 (441)
...|.||+++-
T Consensus 837 -r~Wf~Ravk~d 847 (913)
T KOG0495|consen 837 -REWFERAVKKD 847 (913)
T ss_pred -HHHHHHHHccC
Confidence 78899998774
No 181
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.25 E-value=0.029 Score=60.62 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=108.0
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH 237 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~ 237 (441)
..++|...+..++..|. ..++|. +++ ++.|+.....|+-++|-.+-+..+......+-...-+|-+++
T Consensus 19 E~kQYkkgLK~~~~iL~----k~~eHg---esl-----AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK----KFPEHG---ESL-----AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHhHHHHHHHHHH----hCCccc---hhH-----HhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34677777777776654 233332 223 467888889999999999999999854433345567888999
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
...+|+||+.+|+.||.| .+. ....+-+|+.+...+|+|+-...--.+-|+.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~---~~d-----------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql-------- 138 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI---EKD-----------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQL-------- 138 (700)
T ss_pred hhhhHHHHHHHHHHHHhc---CCC-----------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------
Confidence 999999999999999999 222 2346789999999999998776666665554
Q ss_pred CchHHHHHHHHHHHHHHhhchhhh
Q 013549 318 HPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 318 HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
-|.........|..+.-.|.|..|
T Consensus 139 ~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 477788888899999888877666
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.23 E-value=0.00043 Score=52.74 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
+|+|++|+.+|++++.. +|.-..+...||.+|..+|+|++|+..+++++...+.
T Consensus 4 ~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 58999999999999974 4556677889999999999999999999998766654
No 183
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.19 E-value=0.14 Score=55.60 Aligned_cols=169 Identities=15% Similarity=0.195 Sum_probs=112.3
Q ss_pred HHHHcCCHHHHHHHHHhhhhc------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549 201 VELAHGNLESAESFFKGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274 (441)
Q Consensus 201 ~~~~qG~y~eAe~l~~~aL~~------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~ 274 (441)
+-+..|++.+-..-|.+|+.. ....+.....+|.+|..-|+.+.|..++++|+.. .-+ +
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V---~y~-------~----- 420 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV---PYK-------T----- 420 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC---Ccc-------c-----
Confidence 345689999999999999871 2233456688999999999999999999999987 111 1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh-HHHHH
Q 013549 275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE----ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL-LIQEG 349 (441)
Q Consensus 275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e----~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~-~~Ae~ 349 (441)
.++ .....++-|..-....+|+.|..+.++|...=. ..+...||--+..... -.+...--+++|+.+. .--..
T Consensus 421 v~d-La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS-lkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 421 VED-LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS-LKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred hHH-HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh-HHHHHHHHHHHHHhccHHHHHH
Confidence 111 123467888888889999999999999987533 3456666654443333 3444444556665221 11356
Q ss_pred HHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549 350 LYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 350 ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
.|.|.++++-+. |. ++-|-|.....+.-+.++...++
T Consensus 499 vYdriidLriaT----Pq---ii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 499 VYDRIIDLRIAT----PQ---IIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred HHHHHHHHhcCC----HH---HHHHHHHHHHhhHHHHHHHHHHH
Confidence 788888776542 33 44466666666666666666653
No 184
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.15 E-value=0.024 Score=63.82 Aligned_cols=202 Identities=9% Similarity=-0.009 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q 013549 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG 160 (441)
Q Consensus 81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G 160 (441)
+.-+|-.+|.+|.++. +.-+.+--.++.+|-+.-.|++|.+...++-...+.. .....|-.++-+|..-|
T Consensus 507 Dm~RA~kCf~KAFeLD--------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~--~~k~nW~~rG~yyLea~ 576 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF--ACKENWVQRGPYYLEAH 576 (1238)
T ss_pred HHHHHHHHHHHHhcCC--------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH--HHHhhhhhccccccCcc
Confidence 5679999999999754 3456666778999999999999999866554333321 11123333566677888
Q ss_pred CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHcc
Q 013549 161 QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATR 240 (441)
Q Consensus 161 ~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG 240 (441)
+...+...++.++.+.-+.. +...-+|-+|...|+|.-|.+.|.++..-.|.+--.-+-.+.+.+..|
T Consensus 577 n~h~aV~~fQsALR~dPkD~------------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTDPKDY------------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred chhhHHHHHHHHhcCCchhH------------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 88888888888874432221 122235888999999999999999998855544334445577889999
Q ss_pred ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 241 NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 241 ~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
+|.+|..-++..+..+....- .-.. .+-++.-++-.+..+|=+.+|..+++++++++.-++-+.
T Consensus 645 kYkeald~l~~ii~~~s~e~~--~q~g-----------LaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERT--GQNG-----------LAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--hhhh-----------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999998877532221 0001 112445666777888999999999999999888776544
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.11 E-value=0.0093 Score=62.10 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchh
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQE 339 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~e 339 (441)
+-.+..+..+|+|+.|.++.++|..+. |+--.+...||.+|..+|+++
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHH
Confidence 344444444455544444444444432 444444444445554444433
No 186
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.98 E-value=0.028 Score=49.71 Aligned_cols=97 Identities=21% Similarity=0.090 Sum_probs=79.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
+.|++...-|+.+.|.+.|.++|..-+..+.+.+|-+..++-||+.++|.+-..+||++. .+ ..-.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~----~trt------- 113 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA---GD----QTRT------- 113 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---Cc----cchH-------
Confidence 456666789999999999999999766667777888999999999999999999999982 11 1111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
.-.+++--|.+|+.+|+-|.|..-|+.|-.+
T Consensus 114 --acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 114 --ACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred --HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 1135678899999999999999999998654
No 187
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.0089 Score=56.38 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=80.3
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
|+-+...|.|++|..-|++||++. - +. +.++....+.|-|.....+++++.|+.-..+|+++.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c---p-----~~-------~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-- 164 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC---P-----ST-------STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-- 164 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC---c-----cc-------cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--
Confidence 455678899999999999999993 1 11 334455567799999999999999999999999874
Q ss_pred hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
|..-..|..-|.+|..+.+|++| ..-|++.+++.
T Consensus 165 ------pty~kAl~RRAeayek~ek~eea------leDyKki~E~d 198 (271)
T KOG4234|consen 165 ------PTYEKALERRAEAYEKMEKYEEA------LEDYKKILESD 198 (271)
T ss_pred ------chhHHHHHHHHHHHHhhhhHHHH------HHHHHHHHHhC
Confidence 77888888999999999999987 78898887763
No 188
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.95 E-value=0.019 Score=59.79 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHH
Q 013549 151 ALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAAL 230 (441)
Q Consensus 151 ~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~ 230 (441)
.|..++...+++++|..++++.. ...++ ...+...+++..++-.+|..+..+++...+.......
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~----~~~pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~ 238 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLR----ERDPE-----------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN 238 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHH----hcCCc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34455555677766666665542 11111 1223455666788999999999999986665656666
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 303 (441)
Q Consensus 231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~ 303 (441)
-.+.++..+|+|+.|.++.++|.++. |. ...+...|+.+|..+|+|++|.-.+
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~ls------------------P~--~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELS------------------PS--EFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC------------------ch--hHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 67999999999999999999999882 22 1346778999999999999996443
No 189
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.11 Score=50.45 Aligned_cols=124 Identities=13% Similarity=0.042 Sum_probs=85.9
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhc---cCCchHHHHH---HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549 199 GLVELAHGNLESAESFFKGLQEE---EGCTGSAALS---YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 272 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~---~~~~~~~a~~---~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~ 272 (441)
...|....+|++|...+.++.+. ....-.++-. -+.+.....++.|+..+|+||..++.+...
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs----------- 106 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS----------- 106 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-----------
Confidence 34456788999999999999972 1222233333 356778899999999999999999754321
Q ss_pred cchhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH-HHHHHHHHHHHHhhchhhh
Q 013549 273 MALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 273 ~~~~~~~~~-al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va-~~l~nLa~ly~~qG~~eeA 341 (441)
|+ +.+ ++---|. ...--+.++|..+|+|++++.+.- +.-..+ ..+.-.+.+|-+-.+|+||
T Consensus 107 --pd--tAAmaleKAak-~lenv~Pd~AlqlYqralavve~~---dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 107 --PD--TAAMALEKAAK-ALENVKPDDALQLYQRALAVVEED---DRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred --cc--hHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 22 111 2223333 344578999999999999999862 222233 5677788999999999887
No 190
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.95 E-value=0.0017 Score=42.86 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
|.++.++|.+|..+|+|++|++.|++++++.+.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 568999999999999999999999999988764
No 191
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.043 Score=53.85 Aligned_cols=170 Identities=20% Similarity=0.202 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG 188 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~ 188 (441)
..+.-=|.+|..-|+|++|+....+.. +..+.++++ .++..+++.+.|+....+..+|. +..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~id---------ed~ 170 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNV--QILLKMHRFDLAEKELKKMQQID---------EDA 170 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccc---------hHH
Confidence 444555678999999999998887732 222334433 33445566666665555554332 222
Q ss_pred hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCc
Q 013549 189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 268 (441)
Q Consensus 189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~l 268 (441)
.+...+.+...++- ..+++.+|--+|+.--..-+.++.+.+..|.+...+|||+||+.+.+.||.- . +.+
T Consensus 171 tLtQLA~awv~la~-ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-----d---~~d- 240 (299)
T KOG3081|consen 171 TLTQLAQAWVKLAT-GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-----D---AKD- 240 (299)
T ss_pred HHHHHHHHHHHHhc-cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-----c---CCC-
Confidence 34334444333321 3456899999999877745557677777888888999999999999999975 1 111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH
Q 013549 269 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 321 (441)
Q Consensus 269 g~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v 321 (441)
| .++.|+=.+-..+|+-+++.+-+.--| +.+-|+||-|
T Consensus 241 ------p-----etL~Nliv~a~~~Gkd~~~~~r~l~QL----k~~~p~h~~v 278 (299)
T KOG3081|consen 241 ------P-----ETLANLIVLALHLGKDAEVTERNLSQL----KLSHPEHPFV 278 (299)
T ss_pred ------H-----HHHHHHHHHHHHhCCChHHHHHHHHHH----HhcCCcchHH
Confidence 2 256788778888999988876555433 4466777755
No 192
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.1 Score=53.11 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 013549 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (441)
Q Consensus 61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ 132 (441)
+.-.-..+|..++- .--|+||+.+|.+.|. +.|..-..--+||..|+...=|+-+.+.+.
T Consensus 150 ~~EdqLSLAsvhYm----R~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 150 TLEDQLSLASVHYM----RMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred hHHHHHhHHHHHHH----HHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 33344445555521 2358999999999995 566777777788888888888776665543
No 193
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.86 E-value=0.21 Score=55.02 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH-------------------HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549 284 FALGQLEAHMGNFGDAEEILTR-------------------TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 344 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~r-------------------AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~ 344 (441)
..++.-|...|+|+.||++|.+ |..+.++.-|++. |.+.+..-|.=...+|+|.+|
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~--t~~~yiakaedldehgkf~ea--- 843 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEA--TISLYIAKAEDLDEHGKFAEA--- 843 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchh--HHHHHHHhHHhHHhhcchhhh---
Confidence 3567778888888888887754 4556667777654 555666677788899998887
Q ss_pred HHHHHHH------HHHHHHhhc
Q 013549 345 LIQEGLY------RRALEFLKA 360 (441)
Q Consensus 345 ~~Ae~ly------~rAL~i~~~ 360 (441)
|.|| .+|+.+++.
T Consensus 844 ---eqlyiti~~p~~aiqmydk 862 (1636)
T KOG3616|consen 844 ---EQLYITIGEPDKAIQMYDK 862 (1636)
T ss_pred ---hheeEEccCchHHHHHHHh
Confidence 6666 355555543
No 194
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.0081 Score=58.86 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=76.6
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhc---cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch
Q 013549 199 GLVELAHGNLESAESFFKGLQEE---EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL 275 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~---~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~ 275 (441)
++-++..|+|++|+.-|..-++. ..-.+++.+-||+++..||+|++|...|.++..-+ . .++ -+ |
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~---P---~s~-KA-----p 215 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY---P---KSP-KA-----P 215 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC---C---CCC-CC-----h
Confidence 44456899999999999999993 33457788889999999999999999999988752 1 111 11 3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 276 ~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
.+|.-||.....+|+-++|...|++.++-|
T Consensus 216 -----dallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 216 -----DALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 368999999999999999999999887644
No 195
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.82 E-value=0.0045 Score=62.43 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=82.7
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHH
Q 013549 199 GLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~ 278 (441)
|.-|+.||+|+||+.+|.++++..+..+....|-|..|..+.+|..|+.-..-|+++ .+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~----------------- 163 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKL----------------- 163 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHH-----------------
Confidence 666889999999999999999966655556677888999999999999999999988 222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLAL 330 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ 330 (441)
.+-++..-|..-..+|+..||.+-++++|.+ -|+.-.+-..+..++.
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L-----EP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL-----EPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh-----CcccHHHHHHHHHhcc
Confidence 3456777788888888899999999888864 3444444445554444
No 196
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.79 E-value=0.02 Score=50.62 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=74.6
Q ss_pred HHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 013549 235 YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF 314 (441)
Q Consensus 235 ~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~l 314 (441)
.+..-|+.+.|++.|.+||.+. |+ ...++||-++.|+-||+-++|..-+.+||++.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~------------------P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---- 107 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA------------------PE--RASAYNNRAQALRLQGDDEEALDDLNKALELA---- 107 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc------------------cc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhc----
Confidence 3456799999999999999983 11 23578999999999999999999999999764
Q ss_pred CCCCchHH-HHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 315 GSHHPKVG-VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 315 G~~HP~va-~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
|+. ..++ -++..-|.+|+.+|+.+.| ..-|++|-.+
T Consensus 108 g~~-trtacqa~vQRg~lyRl~g~dd~A------R~DFe~AA~L 144 (175)
T KOG4555|consen 108 GDQ-TRTACQAFVQRGLLYRLLGNDDAA------RADFEAAAQL 144 (175)
T ss_pred Ccc-chHHHHHHHHHHHHHHHhCchHHH------HHhHHHHHHh
Confidence 555 3444 5788899999999999887 6778777665
No 197
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.74 E-value=0.0034 Score=41.34 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
++.++|.+|..+|+|++|++.|++||++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 57899999999999999999999999985
No 198
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.71 E-value=0.0033 Score=41.07 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
|..+..+|.+|..+|+|++|++.|++++.+.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467899999999999999999999999887653
No 199
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.079 Score=51.20 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=39.7
Q ss_pred HcCCHHHHHHHHHhhhhccCCc---hHH---HHHHHHHHHHc-cChHHHHHHHHHHHHHH
Q 013549 204 AHGNLESAESFFKGLQEEEGCT---GSA---ALSYGEYLHAT-RNFLLAKKFYQKVIEVL 256 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~~---~~~---a~~~a~~~~~q-G~y~eA~~ly~rAL~i~ 256 (441)
..++.++|..+++++++..... ..+ ...+|++|..- -++++|+..|++|-+-+
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 5778888888998888821111 122 24678888765 89999999999999985
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.015 Score=57.74 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATR---NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG---~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
++|-+|..+|+++.|..-|.+++...+..+.....||+++..+. .-.+|..++++||.. ++.
T Consensus 161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--------D~~------- 225 (287)
T COG4235 161 LLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--------DPA------- 225 (287)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--------CCc-------
Confidence 57889999999999999999999977777888889998766553 345899999999976 111
Q ss_pred chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549 274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF 332 (441)
Q Consensus 274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly 332 (441)
.+.++.-||.-+..+|+|.+|...++.-|+ .+-++-|.+..+=-.++...
T Consensus 226 -----~iral~lLA~~afe~g~~~~A~~~Wq~lL~----~lp~~~~rr~~ie~~ia~~~ 275 (287)
T COG4235 226 -----NIRALSLLAFAAFEQGDYAEAAAAWQMLLD----LLPADDPRRSLIERSIARAL 275 (287)
T ss_pred -----cHHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHHHH
Confidence 246788999999999999999988877664 56677777665555444443
No 201
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.62 E-value=0.17 Score=59.05 Aligned_cols=207 Identities=14% Similarity=0.179 Sum_probs=138.0
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh---hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK---NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK 180 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~---~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~ 180 (441)
||.-+....+-=..+.+.++.++|.+..+|||.-- ++ ......|-++.++....|..+.-..+++++-+...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe--eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE--EEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh--HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc---
Confidence 45545544444446778899999999999997422 22 11223444555554455765555666666532221
Q ss_pred CCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549 181 PENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK 260 (441)
Q Consensus 181 ~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~ 260 (441)
.+... ..|.+ +|..-+++++|.++|++.++...+...+...|+..+..|.+-++|..+.+|||.-..+
T Consensus 1529 --------~~~V~-~~L~~-iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-- 1596 (1710)
T KOG1070|consen 1529 --------AYTVH-LKLLG-IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-- 1596 (1710)
T ss_pred --------hHHHH-HHHHH-HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch--
Confidence 11111 11333 4567899999999999999965577778899999999999999999999999987321
Q ss_pred ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhh
Q 013549 261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 340 (441)
Q Consensus 261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ee 340 (441)
.+ ++..+.--|++-+.-|+-+++..+|+--|. .||.--...+-....-..+|..+.
T Consensus 1597 --------------~e--Hv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1597 --------------QE--HVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred --------------hh--hHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHH
Confidence 11 244567889999999999999988887765 445543333333344445554444
Q ss_pred hhhhHHHHHHHHHHHHH
Q 013549 341 SSALLIQEGLYRRALEF 357 (441)
Q Consensus 341 A~~~~~Ae~ly~rAL~i 357 (441)
...+|+|+++.
T Consensus 1653 ------vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1653 ------VRDLFERVIEL 1663 (1710)
T ss_pred ------HHHHHHHHHhc
Confidence 48999999876
No 202
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.60 E-value=0.21 Score=43.55 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=77.7
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
++-...-|-|++|..-|++|+++- +.-+....+. .+....-+...|+..+..+|+|+++..--.+||..+.+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~s---rtiP~eEaFD-----h~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVS---RTIPAEEAFD-----HDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHH---TTS-TTS--------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHh---ccCChHhhcc-----cccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 443445589999999999999993 3312222221 12222223457999999999999999999999999887
Q ss_pred hhCCCCchHHH----HHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 313 LFGSHHPKVGV----VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 313 ~lG~~HP~va~----~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
-|+=|.+.+. +..+-|..+...|+.++| .+-|+.+-+..
T Consensus 88 -RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA------~~~fr~agEMi 130 (144)
T PF12968_consen 88 -RGELHQDEGKLWIAAVFSRAVALEGLGRKEEA------LKEFRMAGEMI 130 (144)
T ss_dssp -H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHH
T ss_pred -ccccccccchhHHHHHHHHHHHHHhcCChHHH------HHHHHHHHHHH
Confidence 4777777553 566788889999999987 88999999987
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=96.58 E-value=0.031 Score=51.20 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
....+|--+..+|+|++|+.+|+-..-. . +..+ .-..+||.+++.+|+|++|.++|..|.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d----------~~n~-----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIY-----D----------FYNP-----DYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C----------cCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666678999999999999875543 1 1111 235799999999999999999999998
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
.+.. +.|.. ....|..|..+|+.++| ...|.-+++
T Consensus 99 ~l~~-----~dp~p---~f~agqC~l~l~~~~~A------~~~f~~a~~ 133 (165)
T PRK15331 99 TLLK-----NDYRP---VFFTGQCQLLMRKAAKA------RQCFELVNE 133 (165)
T ss_pred Hccc-----CCCCc---cchHHHHHHHhCCHHHH------HHHHHHHHh
Confidence 7653 44443 66788999999998887 666666655
No 204
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=1 Score=45.18 Aligned_cols=252 Identities=17% Similarity=0.133 Sum_probs=152.4
Q ss_pred cCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 54 NGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 54 ~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
++...|.+-+.+.-++.+|++.+ +|.+|-.+|+|-- -.||..+.--.--|..++.-|.|.+|+.....
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q----~f~~AA~CYeQL~--------ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQ----EFALAAECYEQLG--------QLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHH----HHHHHHHHHHHHH--------hhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 46667777777888888887643 7999999999854 46898888888888888999999999866655
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES 213 (441)
Q Consensus 134 al~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~ 213 (441)
..+- + .+-.+ .+.--+.+.++-++..-+. .++++..++ .++..++ ..|-+....|+|++|.+
T Consensus 104 ~~D~-~-~L~~~--~lqLqaAIkYse~Dl~g~r-------sLveQlp~e--n~Ad~~i-----n~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 104 LLDN-P-ALHSR--VLQLQAAIKYSEGDLPGSR-------SLVEQLPSE--NEADGQI-----NLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred hcCC-H-HHHHH--HHHHHHHHhcccccCcchH-------HHHHhccCC--Cccchhc-----cchheeeccccHHHHHH
Confidence 4221 0 00000 0100112222223322221 222222211 1112221 12444458999999999
Q ss_pred HHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc--cchh--------HH----H
Q 013549 214 FFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN--MALE--------EV----A 279 (441)
Q Consensus 214 l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~--~~~~--------~~----~ 279 (441)
-|+.++....-.+-.+.|+|..+...|+|+.|..+--..++- |..+||.+|.+- ..++ .+ .
T Consensus 166 kFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR-----G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER-----GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh-----hhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 999999955556678999999999999999999988776553 223555555311 1111 00 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH-----------------HHHHHHHHH-----------hhCCCCchHHHHHHHHHHH
Q 013549 280 LAATFALGQLEAHMGNFGDAEEIL-----------------TRTLTKTEE-----------LFGSHHPKVGVVLTCLALM 331 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~-----------------~rAL~i~e~-----------~lG~~HP~va~~l~nLa~l 331 (441)
+.++|--+.++...|+|+-|.+-+ ..||.-.+. .+|- .|---.+..||=.+
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~-nPfP~ETFANlLll 319 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ-NPFPPETFANLLLL 319 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc-CCCChHHHHHHHHH
Confidence 112333366889999999887644 344433322 1333 45555677777788
Q ss_pred HHHhhchhhh
Q 013549 332 FRNKAMQEHS 341 (441)
Q Consensus 332 y~~qG~~eeA 341 (441)
|+...-|+-|
T Consensus 320 yCKNeyf~lA 329 (459)
T KOG4340|consen 320 YCKNEYFDLA 329 (459)
T ss_pred HhhhHHHhHH
Confidence 8775544433
No 205
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.49 E-value=0.039 Score=47.95 Aligned_cols=102 Identities=14% Similarity=0.026 Sum_probs=59.2
Q ss_pred CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----c--cC----CchHH
Q 013549 160 GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-----E--EG----CTGSA 228 (441)
Q Consensus 160 G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----~--~~----~~~~~ 228 (441)
|.|.+|..-+.+++++...-.++..-++.......-+-+.-+....|+|+++..--+++|. + +. ....+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 4444444445555544443332211122222222223334455689999999888888887 1 11 12345
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
..+-+..+...|+.+||...|+.|-++..++|+
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 577788899999999999999999999888887
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.036 Score=54.37 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=79.8
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
.++.|--+...|+|.+|+.-|+.=+.-+ +...+ +-.+++.||++++.||+|++|...|..+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-------P~s~~----------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-------PNSTY----------TPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCcc----------cchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4444555667899999999999876542 11122 224789999999999999999999999988
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
-+ |+||..-..|.-||.+....|+-++| -..|++.++-
T Consensus 207 ~~-----P~s~KApdallKlg~~~~~l~~~d~A------~atl~qv~k~ 244 (262)
T COG1729 207 DY-----PKSPKAPDALLKLGVSLGRLGNTDEA------CATLQQVIKR 244 (262)
T ss_pred hC-----CCCCCChHHHHHHHHHHHHhcCHHHH------HHHHHHHHHH
Confidence 43 78999999999999999999999987 5667766443
No 207
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.27 Score=47.63 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=52.2
Q ss_pred HHHHHHHHHH--HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH--HHHHHHHHHHc-CCHHHHHH
Q 013549 227 SAALSYGEYL--HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA--TFALGQLEAHM-GNFGDAEE 301 (441)
Q Consensus 227 ~~a~~~a~~~--~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a--l~nLg~ly~~q-G~y~eAe~ 301 (441)
.++.+|.+.. .+.++..+|....++|++|++....| +.++ ...+|.+|..- -++++|+.
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf----------------~~aAk~~~~iaEiyEsdl~d~ekaI~ 135 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRF----------------TMAAKHHIEIAEIYESDLQDFEKAIA 135 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHH----------------HHHHhhhhhHHHHHhhhHHHHHHHHH
Confidence 4667775543 45679999999999999998754432 2222 34789988765 89999999
Q ss_pred HHHHHHHHHH
Q 013549 302 ILTRTLTKTE 311 (441)
Q Consensus 302 l~~rAL~i~e 311 (441)
+|++|-+.|.
T Consensus 136 ~YE~Aae~yk 145 (288)
T KOG1586|consen 136 HYEQAAEYYK 145 (288)
T ss_pred HHHHHHHHHc
Confidence 9999988875
No 208
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.39 E-value=0.041 Score=45.40 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCC-chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLA-ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR 145 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~-h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~ 145 (441)
.|+|.+|++-+.+.+.......... .-....++.++|.++...|++++|+..+++++++.+.. ++.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~-~D~ 77 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN-GDR 77 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-CCH
Confidence 4789999999999999877665444 22466779999999999999999999999999999874 443
No 209
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.38 E-value=0.13 Score=50.87 Aligned_cols=111 Identities=18% Similarity=0.252 Sum_probs=78.6
Q ss_pred HHcCCHHHHHHHHHhhhhcc-CCc-------hHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHh-hcccCCCCCccccc
Q 013549 203 LAHGNLESAESFFKGLQEEE-GCT-------GSAALSYGEYLHATR-NFLLAKKFYQKVIEVLAE-QKDFSDMNTLGSCN 272 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~-~~~-------~~~a~~~a~~~~~qG-~y~eA~~ly~rAL~i~~~-~~~~~~~~~lg~~~ 272 (441)
..||+++-|+.+|.|+-... ... ....+++|.-...++ +|++|..+.+||+++... .+. ...+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~-------~~~~ 76 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM-------DKLS 76 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc-------cccC
Confidence 47999999999999997721 111 233466777778888 999999999999999743 221 1112
Q ss_pred cchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549 273 MALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 322 (441)
Q Consensus 273 ~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va 322 (441)
....+..+.++..|+.+|...+.++-.+. -.+++..-+.-+| +||.+-
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~ 124 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF 124 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH
Confidence 22345677788999999999998865554 5556666666666 577766
No 210
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.29 E-value=0.0097 Score=38.79 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
++..+|.+|..+|+|++|++.|++++.+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999999875
No 211
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.25 E-value=0.04 Score=52.70 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=69.4
Q ss_pred cCCHHHHHHHHHhhhh----ccCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 205 HGNLESAESFFKGLQE----EEGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 205 qG~y~eAe~l~~~aL~----~~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
.-.+++|..-|.-|+- ....+ +...+.+|.+|+.+|+-++...++++|++.+++.-...+.+. +.|.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~---~~~~--- 163 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI---EGMD--- 163 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC---CCch---
Confidence 3457888888887776 12122 344566799999999999999999999998766544112211 2222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
....+.-+|.+++..|++++|...|.+.+.-
T Consensus 164 -~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 164 -EATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred -HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 2345678999999999999999998887753
No 212
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.24 E-value=0.13 Score=49.24 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=120.7
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGL-YLQLGQDDTSSVVADKCLQLCEKHKPE 182 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l-~~~~G~~~~A~~l~~~~L~i~~~~~~~ 182 (441)
....|..+.-.|.+|.+.|=++=|.--|.+++.|.+... ...|..|+ +.+-|+++.|..-++..+++- ..
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~-----~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~- 131 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP-----EVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PT- 131 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH-----HHHHHHHHHHHhcccchHHHHHhhhHhccC---Cc-
Confidence 446788899999999999999999999999998887653 44565555 557788988888777665332 11
Q ss_pred cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh--------------cc-CCch-HHHHHHHH------------
Q 013549 183 NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE--------------EE-GCTG-SAALSYGE------------ 234 (441)
Q Consensus 183 ~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~--------------~~-~~~~-~~a~~~a~------------ 234 (441)
+ .++.-..|+....-|||.-|..=|.+--. .+ +..+ .+-.++..
T Consensus 132 -y-------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~ 203 (297)
T COG4785 132 -Y-------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGW 203 (297)
T ss_pred -c-------hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhH
Confidence 1 12222345555678888777644433222 00 1111 11122211
Q ss_pred --HHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 235 --YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 235 --~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
+-...|+..+ +.+++++.+..++ ...++ ++ ..-++.-||-.|..+|+.++|..+|+-|+.-.--
T Consensus 204 ~iV~~yLgkiS~-e~l~~~~~a~a~~------n~~~A------e~-LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 204 NIVEFYLGKISE-ETLMERLKADATD------NTSLA------EH-LTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HHHHHHHhhccH-HHHHHHHHhhccc------hHHHH------HH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 2223455554 5667777766321 11232 22 2357889999999999999999999987654322
Q ss_pred hhCCCCchHHHHHHHHHHHHHHhhchh
Q 013549 313 LFGSHHPKVGVVLTCLALMFRNKAMQE 339 (441)
Q Consensus 313 ~lG~~HP~va~~l~nLa~ly~~qG~~e 339 (441)
-| ..-.-.+..|+.++..|...+
T Consensus 270 nf----VE~RyA~~EL~~l~q~~~~l~ 292 (297)
T COG4785 270 NF----VEHRYALLELSLLGQDQDDLA 292 (297)
T ss_pred HH----HHHHHHHHHHHHhccccchhh
Confidence 12 112334555666666554433
No 213
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.24 E-value=0.08 Score=50.63 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=77.8
Q ss_pred ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549 239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 318 (441)
Q Consensus 239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H 318 (441)
--.+++|...|.-||-...-.+. ++. ........||-+|..+|+-++...++++|+..+++.+-.+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~---~~s----------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~ 156 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKE---KPS----------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED 156 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC---CHH----------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 35688999999999977532221 110 12223458999999999999999999999999999975554
Q ss_pred c-----hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 319 P-----KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 319 P-----~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
. +-...+.=+|.++.+.|++++| ...|.+.+...+
T Consensus 157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA------~~~fs~vi~~~~ 196 (214)
T PF09986_consen 157 FPIEGMDEATLLYLIGELNRRLGNYDEA------KRWFSRVIGSKK 196 (214)
T ss_pred CCCCCchHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHcCCC
Confidence 4 2357788899999999999987 788888866544
No 214
>PRK11906 transcriptional regulator; Provisional
Probab=96.16 E-value=0.18 Score=53.08 Aligned_cols=129 Identities=11% Similarity=0.075 Sum_probs=79.9
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES---GNYVEAIEKLQKVENFKNSILGVRVAAMEALAG 154 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~q---G~y~eA~e~~~ral~i~~~~lg~~~~al~~La~ 154 (441)
......+|+.++++|+..+ +-.|..+.++..+|.+++.. |-.+ -+.-
T Consensus 270 t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~------------------------ 319 (458)
T PRK11906 270 TPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSE-LELA------------------------ 319 (458)
T ss_pred CHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCC-chHH------------------------
Confidence 3456889999999999654 34678888888888887653 2211 0000
Q ss_pred HHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHH
Q 013549 155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGE 234 (441)
Q Consensus 155 l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~ 234 (441)
-.+|..++++++++- . ....+....|.+....|+++.|..+|++|+.-.+....+...+|.
T Consensus 320 -------~~~a~~~A~rAveld-------~-----~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~ 380 (458)
T PRK11906 320 -------AQKALELLDYVSDIT-------T-----VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL 380 (458)
T ss_pred -------HHHHHHHHHHHHhcC-------C-----CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence 011222223332111 0 011223345666667777888888888888865555555555666
Q ss_pred HHHHccChHHHHHHHHHHHHH
Q 013549 235 YLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 235 ~~~~qG~y~eA~~ly~rAL~i 255 (441)
+..--|+.++|.+..++|+..
T Consensus 381 ~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 381 VHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHcCCHHHHHHHHHHHhcc
Confidence 666778888888888888876
No 215
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.08 E-value=0.045 Score=45.17 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=60.5
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
..|+|.+|.+...+..+....... ... ......++.++|.++...|++++|...+++|+.+.++. .+
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~---~~~--------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D 76 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNN---SSS--------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GD 76 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhccc---chh--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CC
Confidence 679999999999999998532221 000 00122357899999999999999999999999999986 34
Q ss_pred CchHHHHHHHHHHHH
Q 013549 318 HPKVGVVLTCLALMF 332 (441)
Q Consensus 318 HP~va~~l~nLa~ly 332 (441)
+..++.++..+..+.
T Consensus 77 ~~~l~~al~~~~~l~ 91 (94)
T PF12862_consen 77 RRCLAYALSWLANLL 91 (94)
T ss_pred HHHHHHHHHHHHHHh
Confidence 556666666666554
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.07 E-value=0.078 Score=46.66 Aligned_cols=100 Identities=17% Similarity=0.102 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCc--------------hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAE--------------SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV 144 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h--------------~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~ 144 (441)
.|...+++..+++++.++...+-++. .....++..++..+...|+|++|+..+++++.+.+-.
T Consensus 19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~--- 95 (146)
T PF03704_consen 19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD--- 95 (146)
T ss_dssp TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---
Confidence 35678999999999998866554442 2356778888889999999999999999998877542
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549 145 RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (441)
Q Consensus 145 ~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~ 182 (441)
-..+..++.+|..+|+..+|..+|+++...+....+.
T Consensus 96 -E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 96 -EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred -HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 1255668889999999999999999998887765543
No 217
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.05 E-value=0.082 Score=50.04 Aligned_cols=104 Identities=20% Similarity=0.091 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~-~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~ 184 (441)
.-+..+-.=|+-++..|+|.+|...|+.||.++++.... +...+.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~---------------------------------- 138 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYS---------------------------------- 138 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHh----------------------------------
Confidence 456777788899999999999999999999999875311 000011
Q ss_pred hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
..+.+.+.+++++.|+.-..+++...+....+...-|.+|..+.+|++|++-|++.+++
T Consensus 139 ------------Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 139 ------------NRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ------------hhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 12334457888888888888888865555555566688888888999999999988877
No 218
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.00 E-value=0.016 Score=37.93 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
|.++..+|.+|..+|++++|++.|++++++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 46789999999999999999999999988765
No 219
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.99 E-value=0.036 Score=56.11 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=68.6
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
|+-|..||+|+||+++|-++++.. .+++ ....|-|..|..+.+|..||.-.+.|+.+-..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~------P~Np--------------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY------PHNP--------------VYHINRALAYLKQKSFAQAEEDCEAAIALDKL 163 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC------CCCc--------------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 677899999999999999999871 1111 12468999999999999999999999987654
Q ss_pred hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
. ...|..-+..-...|+.+|| ..-|+++|++
T Consensus 164 Y--------~KAYSRR~~AR~~Lg~~~EA------KkD~E~vL~L 194 (536)
T KOG4648|consen 164 Y--------VKAYSRRMQARESLGNNMEA------KKDCETVLAL 194 (536)
T ss_pred H--------HHHHHHHHHHHHHHhhHHHH------HHhHHHHHhh
Confidence 3 34555556666666665554 7778888766
No 220
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.96 E-value=0.02 Score=40.29 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 324 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~ 324 (441)
+...||.+|..+|++++|+.+|+++++. .|++|.+-..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHHHHH
Confidence 4678999999999999999999999984 4666654443
No 221
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.91 E-value=0.17 Score=45.35 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
...+-|.-....|+|++|+..++....-+ ..|. ..-.+...|+-+|..+|+|++|..-+++-+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry----------P~g~-------ya~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRY----------PFGE-------YAEQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC----------CCCc-------ccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34455666678899999999988855431 2221 112467899999999999999999998887
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549 308 TKTEELFGSHHPKVGVVLTCLALMFRNKAM 337 (441)
Q Consensus 308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~ 337 (441)
. |-|.||.+--++.-.|..+..|..
T Consensus 75 r-----LhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 75 R-----LHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred H-----hCCCCCCccHHHHHHHHHHHHHhh
Confidence 6 569999999999999999888764
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.84 E-value=0.19 Score=44.24 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=67.9
Q ss_pred HHcCCHHHHHHHHHhhhh--------ccCC--------------chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549 203 LAHGNLESAESFFKGLQE--------EEGC--------------TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK 260 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~--------~~~~--------------~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~ 260 (441)
...|+.+++...+++++. +... ...+...++..+...|++++|+.++++++.+-
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---- 92 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD---- 92 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS----
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC----
Confidence 357778888888888877 1011 01233456777889999999999999999981
Q ss_pred ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
.+ .+ .....|-.+|..+|++.+|...|++.-....+-+|-+
T Consensus 93 ------P~------~E----~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 93 ------PY------DE----EAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp ------TT-------H----HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred ------CC------CH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 11 01 2456788899999999999999999999999999964
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.80 E-value=0.083 Score=47.26 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=46.9
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhccC---CchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 199 GLVELAHGNLESAESFFKGLQEEEG---CTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~~~---~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
|...+..|+|++|++.|+......+ -...+-+.++.+|..+|+|++|..-|+|=|..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344689999999999999988332 33456678899999999999999999998887
No 224
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.80 E-value=0.02 Score=37.43 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTE 311 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e 311 (441)
++..+|.+|..+|++++|...|++++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 468999999999999999999999999864
No 225
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.79 E-value=0.12 Score=48.04 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhhccCCchHHHHHHHHHHHHccCh---HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHH
Q 013549 208 LESAESFFKGLQEEEGCTGSAALSYGEYLHATRNF---LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF 284 (441)
Q Consensus 208 y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y---~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~ 284 (441)
|++|.+-++......+.......+.|.++..+.++ .++..||+.|+.=+++... + .|+ .-.++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~------I-----~P~--~hdAlw 73 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK------I-----NPN--KHDALW 73 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH------H------TT---HHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh------c-----CCc--hHHHHH
Confidence 45555555555555555566677777766655444 4566677766665443322 0 021 125789
Q ss_pred HHHHHHHHcCC----HHHHHHHHHHHHHHHHHhh
Q 013549 285 ALGQLEAHMGN----FGDAEEILTRTLTKTEELF 314 (441)
Q Consensus 285 nLg~ly~~qG~----y~eAe~l~~rAL~i~e~~l 314 (441)
+||++|..+|. -.+|+++|++|..-+++..
T Consensus 74 ~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 74 CLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 99999999876 4688899999988888763
No 226
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.77 E-value=1.2 Score=52.45 Aligned_cols=211 Identities=14% Similarity=0.088 Sum_probs=136.8
Q ss_pred CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
+..-..+=..|.||-..|+ .-+.-..++|+|-..- +--.++..|..+|..-+++++|.++|++.
T Consensus 1493 eeEKLNiWiA~lNlEn~yG-------~eesl~kVFeRAcqyc---------d~~~V~~~L~~iy~k~ek~~~A~ell~~m 1556 (1710)
T KOG1070|consen 1493 EEEKLNIWIAYLNLENAYG-------TEESLKKVFERACQYC---------DAYTVHLKLLGIYEKSEKNDEADELLRLM 1556 (1710)
T ss_pred hHHHHHHHHHHHhHHHhhC-------cHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 4455666677777777763 1234566777776533 34567888888999999999999999988
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
++-..+. ...|--.+...+.+.+-.+|..+..++|..+.++. +..+.. -.+...+..|+-+.+..+
T Consensus 1557 ~KKF~q~----~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e------Hv~~Is----kfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1557 LKKFGQT----RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE------HVEFIS----KFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred HHHhcch----hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh------hHHHHH----HHHHHHhhcCCchhhHHH
Confidence 7765433 34555555556666666677778888877665522 111111 123445689999999999
Q ss_pred HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH-Hc
Q 013549 215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA-HM 293 (441)
Q Consensus 215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~-~q 293 (441)
|+..|...|--.+...-|...-..+|.-+-+..+|+|+++. .+. +. .+-.+++-=.-|. .-
T Consensus 1623 fEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l-----------~l~-----~k--kmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1623 FEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-----------KLS-----IK--KMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc-----------CCC-----hh--HhHHHHHHHHHHHHhc
Confidence 99999966555567777776667789999999999999987 122 11 1122332222222 33
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 013549 294 GNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 294 G~y~eAe~l~~rAL~i~e~~ 313 (441)
|+-...|..=.||++.-+.+
T Consensus 1685 Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1685 GDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred CchhhHHHHHHHHHHHHHHh
Confidence 66666666666666655543
No 227
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.73 Score=43.45 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=83.8
Q ss_pred HHhcCCcc---hhHHHHHHHHHHHHhcCCCcchhhh--------hhHhHHHH-HHHHHHHHcCCHHHHHHHHHhhhh---
Q 013549 156 YLQLGQDD---TSSVVADKCLQLCEKHKPENYKTYG--------AVNSRANA-VKGLVELAHGNLESAESFFKGLQE--- 220 (441)
Q Consensus 156 ~~~~G~~~---~A~~l~~~~L~i~~~~~~~~~~~~~--------~l~~~a~a-l~gl~~~~qG~y~eAe~l~~~aL~--- 220 (441)
|++.++-+ +|...|++.++......+......+ .......+ -..-.+...|++++|+..++.+++
T Consensus 41 ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~ 120 (207)
T COG2976 41 YWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK 120 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch
Confidence 55555544 6777788877666443331111111 11000001 122344579999999999999997
Q ss_pred ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHH
Q 013549 221 EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 300 (441)
Q Consensus 221 ~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe 300 (441)
++.-..-+..++|.+...+|+|++|....... ++ +.+. .....--|.++..+|+-++|.
T Consensus 121 De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~----~~w~----------~~~~elrGDill~kg~k~~Ar 179 (207)
T COG2976 121 DENLKALAALRLARVQLQQKKADAALKTLDTI-------KE----ESWA----------AIVAELRGDILLAKGDKQEAR 179 (207)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------cc----ccHH----------HHHHHHhhhHHHHcCchHHHH
Confidence 22222344578899999999999998765431 21 1111 011234699999999999999
Q ss_pred HHHHHHHHHH
Q 013549 301 EILTRTLTKT 310 (441)
Q Consensus 301 ~l~~rAL~i~ 310 (441)
.-|++||.+.
T Consensus 180 ~ay~kAl~~~ 189 (207)
T COG2976 180 AAYEKALESD 189 (207)
T ss_pred HHHHHHHHcc
Confidence 9999999874
No 228
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.17 Score=50.41 Aligned_cols=38 Identities=5% Similarity=-0.003 Sum_probs=25.8
Q ss_pred CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
.+|.-+....-||.+|..+|+++.|..-|.+|+.+..+
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~ 188 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD 188 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC
Confidence 35555666667777777777777777777777666543
No 229
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.68 E-value=1.1 Score=50.36 Aligned_cols=171 Identities=17% Similarity=0.133 Sum_probs=96.9
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
.||..-...+==|+++.| +|+++||..++|---. .++++ -.||..+-.+|.++|++++|..+|+++..
T Consensus 38 k~Pn~~~a~vLkaLsl~r----~gk~~ea~~~Le~~~~-----~~~~D---~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFR----LGKGDEALKLLEALYG-----LKGTD---DLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HCCCcHHHHHHHHHHHHH----hcCchhHHHHHhhhcc-----CCCCc---hHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 456555555555666644 6899999966654332 22332 34577778899999999999999999876
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH------
Q 013549 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES------ 210 (441)
Q Consensus 137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e------ 210 (441)
..++ . ..+..+...|.+-+.|.+-. +-+++++...+...| +..+...++...+-..++
T Consensus 106 ~~P~-e----ell~~lFmayvR~~~yk~qQ---kaa~~LyK~~pk~~y--------yfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 106 KYPS-E----ELLYHLFMAYVREKSYKKQQ---KAALQLYKNFPKRAY--------YFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hCCc-H----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCcccc--------hHHHHHHHHHHhccCCcccccchh
Confidence 6654 1 12233344455555554332 223444544442211 222333443333333222
Q ss_pred ---HHHHHHhhhhccCCchHH--HHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 211 ---AESFFKGLQEEEGCTGSA--ALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 211 ---Ae~l~~~aL~~~~~~~~~--a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
|+..+++.++........ +.-|-.++..+|+|+||.+.+..-+.-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~ 219 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE 219 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 555666666533222222 234556778899999999998766654
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=95.61 E-value=0.27 Score=51.81 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=90.1
Q ss_pred HHHHHHHHcCC---HHHHHHHHHhhh---hccCCchHHHHHHHHHHHH---------ccChHHHHHHHHHHHHHHHhhcc
Q 013549 197 VKGLVELAHGN---LESAESFFKGLQ---EEEGCTGSAALSYGEYLHA---------TRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 197 l~gl~~~~qG~---y~eAe~l~~~aL---~~~~~~~~~a~~~a~~~~~---------qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
+.|+.++.++. .++|..+|.+++ ..++....+...++.++.. ...-.+|..+-+||+++ ...
T Consensus 260 lrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel---d~~ 336 (458)
T PRK11906 260 LAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI---TTV 336 (458)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---CCC
Confidence 45665555554 578999999999 4333333222223333221 23345788888888887 111
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
...++..+|.++...|+++.|..+|+||+.+ .|..+.++.-.|.+..--|+.++|
T Consensus 337 -----------------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 337 -----------------DGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred -----------------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHH
Confidence 1246778999999999999999999999975 488888889899999999999887
Q ss_pred hhhHHHHHHHHHHHHH
Q 013549 342 SALLIQEGLYRRALEF 357 (441)
Q Consensus 342 ~~~~~Ae~ly~rAL~i 357 (441)
....++|+..
T Consensus 392 ------~~~i~~alrL 401 (458)
T PRK11906 392 ------RICIDKSLQL 401 (458)
T ss_pred ------HHHHHHHhcc
Confidence 7777787655
No 231
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.48 E-value=0.009 Score=40.02 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=27.7
Q ss_pred HHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHH
Q 013549 89 LEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIE 129 (441)
Q Consensus 89 ~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e 129 (441)
|+++++ .+|.-..++++||.+|..+|++++|++
T Consensus 2 y~kAie--------~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIE--------LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHH--------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 667775 356778899999999999999999973
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.45 E-value=1.2 Score=43.63 Aligned_cols=179 Identities=20% Similarity=0.247 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR-VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~-~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~ 186 (441)
+..+.+=|....+.|+|++|+..|+....-.+ .+.- -.+.-.++..++.-++|++|....++-+.+.-.....
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p--~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~---- 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHP--FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA---- 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh----
Confidence 45566666677799999999999998753222 1111 1245557777888999999999888887555433322
Q ss_pred hhhhHhHHHHHHHHHHHH--------cCCHHHHHHHHHhhhhccCCc---hHH------------H--HHHHHHHHHccC
Q 013549 187 YGAVNSRANAVKGLVELA--------HGNLESAESFFKGLQEEEGCT---GSA------------A--LSYGEYLHATRN 241 (441)
Q Consensus 187 ~~~l~~~a~al~gl~~~~--------qG~y~eAe~l~~~aL~~~~~~---~~~------------a--~~~a~~~~~qG~ 241 (441)
.++..+.|+.+.. |.--.+|..-|+..+..-|.. +++ . ...|..|...|.
T Consensus 108 -----dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 108 -----DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA 182 (254)
T ss_pred -----hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2334466777653 222345666667776622211 111 1 234778999999
Q ss_pred hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH
Q 013549 242 FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 321 (441)
Q Consensus 242 y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v 321 (441)
|.-|.--++++++-...+. . .--++.-|...|..+|-.++|.. ..+++|.+-|+.
T Consensus 183 ~~AA~nR~~~v~e~y~~t~------~-----------~~eaL~~l~eaY~~lgl~~~a~~--------~~~vl~~N~p~s 237 (254)
T COG4105 183 YVAAINRFEEVLENYPDTS------A-----------VREALARLEEAYYALGLTDEAKK--------TAKVLGANYPDS 237 (254)
T ss_pred hHHHHHHHHHHHhcccccc------c-----------hHHHHHHHHHHHHHhCChHHHHH--------HHHHHHhcCCCC
Confidence 9999999999887632111 0 11357788999999999999965 467788777765
Q ss_pred H
Q 013549 322 G 322 (441)
Q Consensus 322 a 322 (441)
-
T Consensus 238 ~ 238 (254)
T COG4105 238 Q 238 (254)
T ss_pred c
Confidence 4
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.39 E-value=1.3 Score=47.39 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=102.9
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhh----HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHH
Q 013549 121 SGNYVEAIEKLQKVENFKNSILGVR----VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANA 196 (441)
Q Consensus 121 qG~y~eA~e~~~ral~i~~~~lg~~----~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~a 196 (441)
.|+-+.++.++.++.+ .....++- .-.++............+.-...++++|+-..+..|. ..+. .-
T Consensus 201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~-----s~lf---l~ 271 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN-----SALF---LF 271 (468)
T ss_pred CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC-----cHHH---HH
Confidence 7899999999988754 21111111 0111111111111100122223334444444444432 1111 12
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCc---h-HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCT---G-SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 272 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~---~-~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~ 272 (441)
..|.++..+|+.++|+..|++++...... . -....++..+..+++|++|...+.+-++. .+ ..
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---s~-------WS--- 338 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---SK-------WS--- 338 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc---cc-------cH---
Confidence 35777889999999999999999722111 1 12244577888999999999999987765 11 11
Q ss_pred cchhHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhhCCCCc
Q 013549 273 MALEEVALAATFALGQLEAHMGNF-------GDAEEILTRTLTKTEELFGSHHP 319 (441)
Q Consensus 273 ~~~~~~~~~al~nLg~ly~~qG~y-------~eAe~l~~rAL~i~e~~lG~~HP 319 (441)
...-.+-.|..|...|+. ++|.+++.++-....++.|..-|
T Consensus 339 ------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 339 ------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred ------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 111235678888889999 99999999999999998885555
No 234
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.38 E-value=0.013 Score=39.17 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=30.3
Q ss_pred HHHhhhhccCCchHHHHHHHHHHHHccChHHHHH
Q 013549 214 FFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKK 247 (441)
Q Consensus 214 l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ 247 (441)
+|+++|+.+|....+..++|.+|..+|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999888888999999999999999999963
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.28 E-value=0.04 Score=38.71 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
.++..+|.+|..+|++++|+..|+++++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 357899999999999999999999999887764
No 236
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.28 E-value=1.6 Score=43.40 Aligned_cols=229 Identities=14% Similarity=0.209 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHHh
Q 013549 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV--RVAAMEALAGLYLQ 158 (441)
Q Consensus 81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~--~~~al~~La~l~~~ 158 (441)
..++|+.-|+++|+.. |+.-..--.++-.|-.+++++|+|.+-.+.|.+.+.--.+.+-- .-.+.|++...-..
T Consensus 42 ~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred CHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 6889999999999876 33333445788899999999999999999999988766654311 01233443332111
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCC-cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh------ccCCc--hH-H
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPE-NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE------EEGCT--GS-A 228 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~-~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~------~~~~~--~~-~ 228 (441)
..+-+.-..+|+.-|+.++....+ -|- .-+.-+|-+|+..|.|..-+++.++.-. ++... +. .
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWF-------KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL 190 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWF-------KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL 190 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeee-------eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence 122233344555555555443311 121 1112246777888888887777665433 11111 11 1
Q ss_pred HHHHH---HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHH-HHHHHHHHcCCHHHHHHHHH
Q 013549 229 ALSYG---EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF-ALGQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 229 a~~~a---~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~-nLg~ly~~qG~y~eAe~l~~ 304 (441)
.--|| ..|..|.+-.+=..+|++||.|- -. + |+...++..- .=|-.+..-|+|++|-.-|-
T Consensus 191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiK---SA------I------PHPlImGvIRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 191 LEIYALEIQMYTEQKNNKKLKALYEQALHIK---SA------I------PHPLIMGVIRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred hhhHhhHhhhhhhhcccHHHHHHHHHHHHhh---cc------C------CchHHHhHHHHcCCccccccchHHHHHhHHH
Confidence 22233 36778889899999999999992 11 0 1112333332 23556777899999999998
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549 305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 336 (441)
Q Consensus 305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG 336 (441)
+|..-+.+.-.|... +-.-+--||.+....|
T Consensus 256 EAFKNYDEsGspRRt-tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 256 EAFKNYDESGSPRRT-TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHhcccccCCcchh-HHHHHHHHHHHHHHcC
Confidence 888887765443332 2222334555554444
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.37 Score=48.02 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=80.3
Q ss_pred HHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHH---------------HHHHHHhhcccCCCC
Q 013549 202 ELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQK---------------VIEVLAEQKDFSDMN 266 (441)
Q Consensus 202 ~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~r---------------AL~i~~~~~~~~~~~ 266 (441)
....|++.+|.++|..++...+....+...|+++|-..|++++|..++.. -|+....-....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 35799999999999999995555677889999999999999998888765 133322222100000
Q ss_pred Ccc-ccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH
Q 013549 267 TLG-SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT 326 (441)
Q Consensus 267 ~lg-~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~ 326 (441)
.+- ...-.|++ ...-..||..|...|++++|.+++ |.|.++..|.+.+.+...+-
T Consensus 224 ~l~~~~aadPdd--~~aa~~lA~~~~~~g~~e~Ale~L---l~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 224 DLQRRLAADPDD--VEAALALADQLHLVGRNEAALEHL---LALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred HHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH---HHHHHhcccccCcHHHHHHH
Confidence 000 00111222 234678999999999999997766 55666666666666666655
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.43 Score=48.46 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=104.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHH
Q 013549 115 STLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRA 194 (441)
Q Consensus 115 a~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a 194 (441)
+.+++-+|++.+|-....+.|+-.+.-+ .+++--..+|..+|+.+.....+.+.+.-.... .....+
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDl----la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d--------lp~~sY- 176 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDL----LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD--------LPCYSY- 176 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhh----hhhhhhhhHHHhccchhhhhhHHHHhccccCCC--------CcHHHH-
Confidence 4567889999999999988876554321 233333445666777766666555543211111 112222
Q ss_pred HHHHHHHH---HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549 195 NAVKGLVE---LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 271 (441)
Q Consensus 195 ~al~gl~~---~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~ 271 (441)
+.|++. ...|-|++||+.-.+++...+...-+....+-++...|++.|+.++.++.=+-+. .+ .
T Consensus 177 --v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s-----~---- 243 (491)
T KOG2610|consen 177 --VHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QS-----W---- 243 (491)
T ss_pred --HHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hh-----h----
Confidence 334332 3699999999999999996555555677788899999999999999888666642 11 1
Q ss_pred ccchhHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 013549 272 NMALEEVALAATF--ALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 272 ~~~~~~~~~~al~--nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
.+++.| .-|..|..-+.|+.|++.|.+-+
T Consensus 244 -------mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 244 -------MLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred -------HHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 123333 45666777789999999887744
No 239
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.07 E-value=0.15 Score=47.47 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 280 LAATFALGQLEAHMGNF---GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y---~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
..++++-|.++..+.++ .++.++++.|+..+++.+- =+|.--.++.|||..|..+|.+..- ..+|+.+|++|.+
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d--~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPD--TAEAEEYFEKATE 101 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHH
Confidence 35678888888887777 5699999999999999864 3577778999999999999985432 2356788888887
Q ss_pred Hhh
Q 013549 357 FLK 359 (441)
Q Consensus 357 i~~ 359 (441)
-++
T Consensus 102 ~Fq 104 (186)
T PF06552_consen 102 YFQ 104 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.88 E-value=0.29 Score=52.21 Aligned_cols=123 Identities=17% Similarity=0.124 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
....++|..+++..+.. +|.=+--+..-|.++..+|+.++|++.|++++........+....+..++.++..
T Consensus 246 ~~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 44577888888888863 4566777999999999999999999999998765544433344466778888999
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCH-------HHHHHHHHhhhh
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNL-------ESAESFFKGLQE 220 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y-------~eAe~l~~~aL~ 220 (441)
+++|.+|..++.++.+.. .|+ ..+..+ +.|..+...|+. ++|..+|.++..
T Consensus 318 ~~~w~~A~~~f~~L~~~s------~WS--ka~Y~Y---~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKES------KWS--KAFYAY---LAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhcc------ccH--HHHHHH---HHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999998888775321 232 222222 456667778887 777788877766
No 241
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.70 E-value=7.2 Score=41.61 Aligned_cols=167 Identities=19% Similarity=0.147 Sum_probs=110.8
Q ss_pred HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh
Q 013549 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV 144 (441)
Q Consensus 65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~ 144 (441)
-+|||+-- . . ...+.+.+.++|+.||.+. .-.|-.-+..-.--|....+|-+...|...+-.|+-.++..
T Consensus 368 WinYalye-E-l-e~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~--- 437 (677)
T KOG1915|consen 368 WINYALYE-E-L-EAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD--- 437 (677)
T ss_pred HHHHHHHH-H-H-HhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---
Confidence 35666542 1 1 2346789999999999855 34577888888888999999999999999888887666553
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-C
Q 013549 145 RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE-G 223 (441)
Q Consensus 145 ~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~-~ 223 (441)
.....-..+-.++++ +++|-.++++-..-.+++-... .--+-.....|+.|.|-.+|+-|+... .
T Consensus 438 --KlFk~YIelElqL~e-------fDRcRkLYEkfle~~Pe~c~~W-----~kyaElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 438 --KLFKGYIELELQLRE-------FDRCRKLYEKFLEFSPENCYAW-----SKYAELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred --hHHHHHHHHHHHHhh-------HHHHHHHHHHHHhcChHhhHHH-----HHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 233334444445555 4566666555442112111111 111333457999999999999999832 2
Q ss_pred CchHH-HHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 224 CTGSA-ALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 224 ~~~~~-a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
..+.+ .-.|-.+-...|.++.|..+|+|-|+.
T Consensus 504 dmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 504 DMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 23322 345655666889999999999999986
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.64 E-value=2 Score=42.09 Aligned_cols=164 Identities=17% Similarity=0.139 Sum_probs=100.3
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV-AAMEALAGLYL 157 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~-~al~~La~l~~ 157 (441)
.|+|.+|+..|+....-. +-.|-.=+++..++-.++..|+|++|+....+=+...+.+..++- .=+-.|.. +.
T Consensus 47 ~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~-~~ 120 (254)
T COG4105 47 KGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY-FF 120 (254)
T ss_pred cCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH-hc
Confidence 589999999999988543 333445788999999999999999999999998888877644331 11112221 11
Q ss_pred hcCC---cchhHHHHHHHHHHHHhcCCC-cch-hhhhhHhHHH-H------HHHHHHHHcCCHHHHHHHHHhhhhccCC-
Q 013549 158 QLGQ---DDTSSVVADKCLQLCEKHKPE-NYK-TYGAVNSRAN-A------VKGLVELAHGNLESAESFFKGLQEEEGC- 224 (441)
Q Consensus 158 ~~G~---~~~A~~l~~~~L~i~~~~~~~-~~~-~~~~l~~~a~-a------l~gl~~~~qG~y~eAe~l~~~aL~~~~~- 224 (441)
+..+ +..+..-.-..++-+....|. .|. ++.......+ . -.+..|+..|.|.-|..-+++++...+.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 1121 222221112222222233322 121 1111101111 1 1366788899999999999999994333
Q ss_pred --chHHHHHHHHHHHHccChHHHHHH
Q 013549 225 --TGSAALSYGEYLHATRNFLLAKKF 248 (441)
Q Consensus 225 --~~~~a~~~a~~~~~qG~y~eA~~l 248 (441)
...+..-+.+.|..+|-.++|...
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHH
Confidence 344556678889999999999753
No 243
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.42 E-value=0.57 Score=44.15 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHhhhccccCC--------------CCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 80 ESYSQGMLVLEQCLSTQPSDG--------------QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~--------------g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
+...+|-..|+++........ |..+ .-......+|..+.+.|++++|+..++.++.
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~-Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~ 117 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTI-YAVLAALELAKAEVEANNLDKAEAQLKQALA 117 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 345577778887776442211 1111 2233444566777888888888888777653
No 244
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.07 E-value=5.9 Score=42.20 Aligned_cols=202 Identities=18% Similarity=0.186 Sum_probs=123.9
Q ss_pred hhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 013549 74 RSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALA 153 (441)
Q Consensus 74 ~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La 153 (441)
+...+|..+++|..++|+||...- ..|| .-..-+..-...-....|.-++-||+++.+..-. -+....
T Consensus 81 qwEesq~e~~RARSv~ERALdvd~----r~it----LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq----lWyKY~ 148 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERALDVDY----RNIT----LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ----LWYKYI 148 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHHhccc----ccch----HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH----HHHHHH
Confidence 344789999999999999997431 1232 2333444444455566777777777776665321 233333
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHH
Q 013549 154 GLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYG 233 (441)
Q Consensus 154 ~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a 233 (441)
.+-..+|+..-|..++.+=++ -.|+ ...... --...+.....+.|-.+|++-+-.|+.. ..-+.|+
T Consensus 149 ymEE~LgNi~gaRqiferW~~----w~P~----eqaW~s-----fI~fElRykeieraR~IYerfV~~HP~v-~~wikya 214 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME----WEPD----EQAWLS-----FIKFELRYKEIERARSIYERFVLVHPKV-SNWIKYA 214 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc----CCCc----HHHHHH-----HHHHHHHhhHHHHHHHHHHHHheecccH-HHHHHHH
Confidence 333345666555555554321 1111 111111 1122346778899999999988755433 3456788
Q ss_pred HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 013549 234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT----- 308 (441)
Q Consensus 234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~----- 308 (441)
.+-..-|+..-|...|++|++-+ |. ++..-...+..|.--..|..|+.|..+|+=||+
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~------------~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFL------------GD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHh------------hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 88888999999999999999873 10 110111245677777788888888888776653
Q ss_pred ----------HHHHhhCCCC
Q 013549 309 ----------KTEELFGSHH 318 (441)
Q Consensus 309 ----------i~e~~lG~~H 318 (441)
.+|+.+|+..
T Consensus 278 raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred cHHHHHHHHHHHHHHhcchh
Confidence 6788888643
No 245
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.06 E-value=0.075 Score=34.10 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
++.++|.+|..+|++++|+..|++.++-.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5789999999999999999999998766543
No 246
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.04 E-value=1.9 Score=42.61 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~ 186 (441)
...+++.+..++.-.|.|.-...++.++++-.+. ........|+.+-+|.|+...|..++++.-+...+....+..
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e---~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~- 251 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE---QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK- 251 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc---ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh-
Confidence 5678999999999999999999999998774422 223356778889999999999999998764433333322110
Q ss_pred hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 187 YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 187 ~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
....-....+++-+.+|.+|-..|.+++..++.++.+.++=|.++...|+...|..-.+.++++
T Consensus 252 -----~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 252 -----IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred -----HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0111123556777899999999999999977777766677787888899999999999999888
No 247
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.99 E-value=0.17 Score=35.00 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
++.-||.+-...++|++|.+=|++||+|+++.+.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356899999999999999999999999999998764
No 248
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=93.94 E-value=0.13 Score=47.80 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 321 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v 321 (441)
.+.+++||-.-|..+|+|..|.++.++||+-.++..|.+||+|
T Consensus 139 rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 139 RLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 6788999999999999999999999999999999999999986
No 249
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.92 E-value=0.088 Score=31.90 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
+..++|.+|..+|+|++|...|++++.+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 46799999999999999999999998763
No 250
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.82 E-value=0.43 Score=44.20 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=70.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhc---cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549 198 KGLVELAHGNLESAESFFKGLQEE---EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~---~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~ 274 (441)
+|..|...|++++|.+.|.++.+. ..+..+..+++-.+...+|+|.....+..||-.+..+ + + ...
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~-------~--d~~ 110 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--G-------G--DWE 110 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--c-------c--hHH
Confidence 467788999999999999998882 2223445566677778899999999999999998532 1 1 000
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
....+. +--|..+..+++|.+|-++|..++..+
T Consensus 111 -~~nrlk--~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 111 -RRNRLK--VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred -HHHHHH--HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 001122 233445556799999999999998665
No 251
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.65 E-value=1.6 Score=42.14 Aligned_cols=191 Identities=15% Similarity=0.202 Sum_probs=109.9
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
|-|-.+-|.-=+.|+|+|+ |..+.++|-||..+-.-|+|+-|.+.|.-++++.+.. .-+-+|.=..+|
T Consensus 77 SlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~Ya~lNRgi~~Y- 144 (297)
T COG4785 77 SLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALY- 144 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---hHHHhccceeee-
Confidence 4556666777777888765 5577889999999999999999999999887776532 001111111122
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCC--------------cchh-hhhhHhHHHHHH------HHHHHHcCCHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPE--------------NYKT-YGAVNSRANAVK------GLVELAHGNLESAESFFK 216 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~--------------~~~~-~~~l~~~a~al~------gl~~~~qG~y~eAe~l~~ 216 (441)
.-|+|..|.. ..+..+.....+ .+.+ ...+..|+.-+. .++....|+..+ +.+|+
T Consensus 145 Y~gR~~LAq~---d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~ 220 (297)
T COG4785 145 YGGRYKLAQD---DLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLME 220 (297)
T ss_pred ecCchHhhHH---HHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHH
Confidence 2356655432 112222111111 1111 122222322111 234455676654 56777
Q ss_pred hhhhc--cCCc-----hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHH
Q 013549 217 GLQEE--EGCT-----GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL 289 (441)
Q Consensus 217 ~aL~~--~~~~-----~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~l 289 (441)
++... ++.. ..+-.-+|..+.++|..++|..+|+-|++-. .-+ + .+|. -++..|+.+
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann--Vyn------f------VE~R--yA~~EL~~l 284 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN--VYN------F------VEHR--YALLELSLL 284 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--HHH------H------HHHH--HHHHHHHHh
Confidence 77762 1111 1222345888899999999999999988752 111 0 1221 256788888
Q ss_pred HHHcCCHHHHH
Q 013549 290 EAHMGNFGDAE 300 (441)
Q Consensus 290 y~~qG~y~eAe 300 (441)
+..+.+..+++
T Consensus 285 ~q~~~~l~~~~ 295 (297)
T COG4785 285 GQDQDDLAESD 295 (297)
T ss_pred ccccchhhhhh
Confidence 88887776654
No 252
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.48 E-value=0.094 Score=33.64 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
++.++|.+|..+|++++|...|++.++-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999874
No 253
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.41 E-value=0.11 Score=31.45 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
.++.++|.++..+|+|++|+..|++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4678999999999999999999999876543
No 254
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=93.29 E-value=0.045 Score=57.30 Aligned_cols=124 Identities=16% Similarity=0.193 Sum_probs=80.3
Q ss_pred cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHH-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVA-LA-ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~-~~-al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
.+.-.|..++.+|++.... .+ +..+-.....|-+.. .. -.++-.++-.-.++. .++--++|-|+|+++|+.
T Consensus 260 ~D~~~al~~w~~aMe~r~~-~~---e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~---d~~RmqaLiirerILgps 332 (615)
T KOG0508|consen 260 RDLLGALKYWRRAMEERES-DG---ESILEKEPLEPVLAYGYGREVNNREELEELVEDP---DEMRMQALIIRERILGPS 332 (615)
T ss_pred HHHHHHHHHHHHHHHhhhh-cc---ccccccCCCCchhhhhhhhhcCCHHHHHHHhcCh---HHHHHHHHHHHHHHhCCC
Confidence 3566788889999988543 11 111111110010000 00 012333333333443 356789999999999999
Q ss_pred CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc-CCCCCcchHhhhccHH
Q 013549 318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPLESEGVETKVDRTD 376 (441)
Q Consensus 318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~-~~~~~~~~~~~l~nl~ 376 (441)
||+|.-.+.--|.+|..+|+++.- ..|..-||++.++ ..|-.|.|++++-..+
T Consensus 333 h~d~sYyir~rgavyad~g~~~rC------i~LWkyAL~mqQk~l~PlspmT~ssllsFa 386 (615)
T KOG0508|consen 333 HPDVSYYIRYRGAVYADSGEFERC------IRLWKYALDMQQKNLEPLSPMTASSLLSFA 386 (615)
T ss_pred CCCceeEEEeeeeeecCCccHHHH------HHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Confidence 999999999999999999998775 8999999999854 5567777777664333
No 255
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.26 E-value=10 Score=39.46 Aligned_cols=175 Identities=14% Similarity=0.037 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH---cCCHHHHHHHHHhhhh-ccC
Q 013549 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA---HGNLESAESFFKGLQE-EEG 223 (441)
Q Consensus 148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~---qG~y~eAe~l~~~aL~-~~~ 223 (441)
.+-+|.--|...-+|+.+..+.+..-.+-.... .+...+ +-..+.+... .|+.++|...+..++. .+.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~----~~~~~i----~~~yafALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDV----ANQHNI----KFQYAFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccch----hcchHH----HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 444555557666677776666554422200000 000111 1122333334 8999999999999777 444
Q ss_pred CchHHHHHHHHHHHHc---------cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC
Q 013549 224 CTGSAALSYGEYLHAT---------RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 294 (441)
Q Consensus 224 ~~~~~a~~~a~~~~~q---------G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG 294 (441)
..+.+..-.|.+|..+ ..+++|+..|+|+.++ . . ..+. -.|++.++.-.|
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~-~---~~Y~--------------GIN~AtLL~~~g 273 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI---E-P---DYYS--------------GINAATLLMLAG 273 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC---C-c---cccc--------------hHHHHHHHHHcC
Confidence 4455544456655432 3577899999998888 2 1 1122 258888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCC---chHHH-HHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 295 NFGDAEEILTRTLTKTEELFGSHH---PKVGV-VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 295 ~y~eAe~l~~rAL~i~e~~lG~~H---P~va~-~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
.-.+...-.++.-......+|.+- +..-- .+..++.++---|++++| ...+++++..
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka------~~a~e~~~~l 334 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKA------IQAAEKAFKL 334 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHH------HHHHHHHhhc
Confidence 755554334443333333344321 11000 122233444556777665 5666666544
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.15 E-value=3.8 Score=42.52 Aligned_cols=206 Identities=12% Similarity=0.075 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh--
Q 013549 81 SYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ-- 158 (441)
Q Consensus 81 ~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~-- 158 (441)
.|..|..-+.+.|......++.-.--.+.++.+|=..|++.-+|+.=+.+.+..-.+-.-.+......-.-.+-.+..
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn 193 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN 193 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc
Confidence 344444555566665555555444455667788888899999999998888775433100011111122223333334
Q ss_pred -cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH---------cCCHHHHHHHHHhhhhccCCchHH
Q 013549 159 -LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA---------HGNLESAESFFKGLQEEEGCTGSA 228 (441)
Q Consensus 159 -~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~---------qG~y~eAe~l~~~aL~~~~~~~~~ 228 (441)
.|+.++|.......+ ....+.. .+.+ .+.|-+|.. ....++|+..|.++-...+ +.-.
T Consensus 194 ~~gdre~Al~il~~~l---~~~~~~~---~d~~-----gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~ 261 (374)
T PF13281_consen 194 KPGDREKALQILLPVL---ESDENPD---PDTL-----GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYS 261 (374)
T ss_pred cCCCHHHHHHHHHHHH---hccCCCC---hHHH-----HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccc
Confidence 688877776655442 2222111 1222 244555531 2247889999999888553 4456
Q ss_pred HHHHHHHHHHccCh-HHHHHHHHHHHHH--HHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNF-LLAKKFYQKVIEV--LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 305 (441)
Q Consensus 229 a~~~a~~~~~qG~y-~eA~~ly~rAL~i--~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~r 305 (441)
+.|++.++...|.- +...++-+-...+ ....++ .+. .+ . .-.....++.+..-.|++++|.+.+++
T Consensus 262 GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg-----~~~--~~-~---dYWd~ATl~Ea~vL~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 262 GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG-----SLE--KM-Q---DYWDVATLLEASVLAGDYEKAIQAAEK 330 (374)
T ss_pred hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc-----ccc--cc-c---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78899888888864 4333443333222 111222 222 11 1 223345666677778999999999999
Q ss_pred HHHH
Q 013549 306 TLTK 309 (441)
Q Consensus 306 AL~i 309 (441)
++..
T Consensus 331 ~~~l 334 (374)
T PF13281_consen 331 AFKL 334 (374)
T ss_pred Hhhc
Confidence 9865
No 257
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.10 E-value=17 Score=40.18 Aligned_cols=247 Identities=15% Similarity=0.115 Sum_probs=148.6
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh-----h-hhhHHHHHHHH
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-----L-GVRVAAMEALA 153 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~-----l-g~~~~al~~La 153 (441)
+++..|+..++.........+ +......+..-.+.++...|..+++++..+++....... . -+...++.-+.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 678899999988888665332 333445555566677788899999999999986655432 0 01122333333
Q ss_pred HH--HHhcCCcchhHHHHHHHHHHHHhcCCCc------------------------------chhhhhhHhHHHHHHHHH
Q 013549 154 GL--YLQLGQDDTSSVVADKCLQLCEKHKPEN------------------------------YKTYGAVNSRANAVKGLV 201 (441)
Q Consensus 154 ~l--~~~~G~~~~A~~l~~~~L~i~~~~~~~~------------------------------~~~~~~l~~~a~al~gl~ 201 (441)
.+ +...|++..+....+..-+.+....... |-..+.+......+.|+.
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~ 310 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH 310 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH
Confidence 33 4566766677665554433332222110 111122333334456777
Q ss_pred HHHcCCHHHHHHHHHhhhh---c-c----CCch---HHH----------H-----HHHHHHHHccChHHHHHHHHHHHHH
Q 013549 202 ELAHGNLESAESFFKGLQE---E-E----GCTG---SAA----------L-----SYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 202 ~~~qG~y~eAe~l~~~aL~---~-~----~~~~---~~a----------~-----~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
....|..+.|++++++++. . . .... ..+ . -.+.....+|++.+|....+.....
T Consensus 311 ~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 311 NLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL 390 (608)
T ss_pred HhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 7788888999999999988 1 1 0000 000 0 0133445679999999999998877
Q ss_pred HHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch--HH-HHHHHHHHHH
Q 013549 256 LAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK--VG-VVLTCLALMF 332 (441)
Q Consensus 256 ~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~--va-~~l~nLa~ly 332 (441)
.. .. +...+ +....-...-.|.-++..|+.+.|+..|.+.....-...++..+. +. .+.-|+..++
T Consensus 391 ~~---~~-~~~~~-------~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~ 459 (608)
T PF10345_consen 391 CQ---RS-PSKLY-------ESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIIL 459 (608)
T ss_pred Hh---cC-ccchh-------hhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHh
Confidence 32 10 11011 111222346778889999999999999997776666666655444 33 4567888899
Q ss_pred HHhhchh
Q 013549 333 RNKAMQE 339 (441)
Q Consensus 333 ~~qG~~e 339 (441)
...+.-.
T Consensus 460 ~~~~~~~ 466 (608)
T PF10345_consen 460 QYESSRD 466 (608)
T ss_pred Hhhcccc
Confidence 8777543
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=8.4 Score=39.46 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=102.1
Q ss_pred HHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh----ccCCchHHHH
Q 013549 155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE----EEGCTGSAAL 230 (441)
Q Consensus 155 l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~----~~~~~~~~a~ 230 (441)
+..-.|+..+|....++.|+ ..| .++. +....-.++...|+.+.-.+.+++++. +-||..-+.-
T Consensus 112 i~~~~g~~h~a~~~wdklL~----d~P------tDll--a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLD----DYP------TDLL--AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHG 179 (491)
T ss_pred HhhccccccHHHHHHHHHHH----hCc------hhhh--hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHH
Confidence 34445777777666666652 222 1111 111234567789999999999999998 2333333333
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
-|+--+...|-|++|+..-.|||+| +.. ...+.+.++.++.-.|++.|+.++..+.=.-+
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqi---N~~-----------------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W 239 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQI---NRF-----------------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW 239 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccC---CCc-----------------chHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence 4565677889999999999999999 322 12456788999999999999999887765555
Q ss_pred HHhhCCCCchHHHH--HHHHHHHHHHhhchhhhhhhHHHHHHHHHH
Q 013549 311 EELFGSHHPKVGVV--LTCLALMFRNKAMQEHSSALLIQEGLYRRA 354 (441)
Q Consensus 311 e~~lG~~HP~va~~--l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rA 354 (441)
.. .....+ +-..|..|-..+.|+.| ++.|.+-
T Consensus 240 r~------s~mlasHNyWH~Al~~iE~aeye~a------leIyD~e 273 (491)
T KOG2610|consen 240 RQ------SWMLASHNYWHTALFHIEGAEYEKA------LEIYDRE 273 (491)
T ss_pred hh------hhHHHhhhhHHHHHhhhcccchhHH------HHHHHHH
Confidence 42 222222 34456667666776665 6666654
No 259
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.90 E-value=0.96 Score=36.41 Aligned_cols=71 Identities=15% Similarity=0.036 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
+|-..+.-++-++. +...++|+.+++++|... ++.++--.++..|...|.+.|+|.+.++.-.+=+.+.++
T Consensus 5 ~ak~~ie~GlkLY~----~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~e 75 (80)
T PF10579_consen 5 QAKQQIEKGLKLYH----QNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEE 75 (80)
T ss_pred HHHHHHHHHHHHhc----cchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554444432 346889999999999866 456678888999999999999999998887766555543
No 260
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.84 E-value=2.5 Score=41.97 Aligned_cols=145 Identities=20% Similarity=0.306 Sum_probs=94.5
Q ss_pred HHHHcCCHHHHHHHHHhhhh------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549 201 VELAHGNLESAESFFKGLQE------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274 (441)
Q Consensus 201 ~~~~qG~y~eAe~l~~~aL~------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~ 274 (441)
++..+|+|++-...|.+.|. +.+......+++-..-..-.+.+-=..+|+..|+...+.+.+
T Consensus 74 I~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNe------------ 141 (440)
T KOG1464|consen 74 INFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNE------------ 141 (440)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcc------------
Confidence 34579999999999999887 111111111222212223344555668899998886555441
Q ss_pred hhHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH----HHHHHHHHhhchhhhhhhHHHH
Q 013549 275 LEEVALA--ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT----CLALMFRNKAMQEHSSALLIQE 348 (441)
Q Consensus 275 ~~~~~~~--al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~----nLa~ly~~qG~~eeA~~~~~Ae 348 (441)
.+. +-..||.+|.+.|.|.+-...+++--.-...-=|++...-++-|- -=-.+|-.|.+-.+= .
T Consensus 142 ----RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkL------K 211 (440)
T KOG1464|consen 142 ----RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKL------K 211 (440)
T ss_pred ----eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHH------H
Confidence 122 124799999999999999999999888888888888776554333 223466666654432 6
Q ss_pred HHHHHHHHHhhcCCCCCcchH
Q 013549 349 GLYRRALEFLKAPPLESEGVE 369 (441)
Q Consensus 349 ~ly~rAL~i~~~~~~~~~~~~ 369 (441)
.+|++||.|-.+ ..||-+.
T Consensus 212 ~lYeqalhiKSA--IPHPlIm 230 (440)
T KOG1464|consen 212 ALYEQALHIKSA--IPHPLIM 230 (440)
T ss_pred HHHHHHHHhhcc--CCchHHH
Confidence 799999999644 5677644
No 261
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.82 E-value=0.15 Score=31.84 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTR 305 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~r 305 (441)
+..+||.++..+|++++|+.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 467999999999999999998864
No 262
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.72 E-value=4.8 Score=41.56 Aligned_cols=167 Identities=12% Similarity=0.003 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHhhhcccc----CCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhH---------
Q 013549 80 ESYSQGMLVLEQCLSTQPS----DGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRV--------- 146 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~----~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~--------- 146 (441)
..|+++...|.+++...-- .+=..||....+|..++.++..||++..|-++.+|||-..+..+...-
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 4788999999888874410 001468888999999999999999999999999999877775533211
Q ss_pred ----------------HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549 147 ----------------AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (441)
Q Consensus 147 ----------------~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e 210 (441)
.++...+....+.|-+..|..++.-.+.+--.. +.+..+ ...-.+.+..++|+-
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~--------DP~g~l--l~ID~~ALrs~~y~~ 157 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE--------DPLGVL--LFIDYYALRSRQYQW 157 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC--------CcchhH--HHHHHHHHhcCCHHH
Confidence 012222222335555555555544333221110 111111 112223357888988
Q ss_pred HHHHHHhhhh--cc---CCchHHHHHHHHHHHHccCh---------------HHHHHHHHHHHHHH
Q 013549 211 AESFFKGLQE--EE---GCTGSAALSYGEYLHATRNF---------------LLAKKFYQKVIEVL 256 (441)
Q Consensus 211 Ae~l~~~aL~--~~---~~~~~~a~~~a~~~~~qG~y---------------~eA~~ly~rAL~i~ 256 (441)
=+.+++.... .. ...++.+.+.+-.+...++- ++|....++|+..+
T Consensus 158 Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 158 LIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 8888877665 11 13567888888888888877 89999999998763
No 263
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.52 E-value=2.6 Score=41.80 Aligned_cols=122 Identities=12% Similarity=0.196 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH-ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHH
Q 013549 206 GNLESAESFFKGLQEEEGCTGSAALSYGEYLHA-TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF 284 (441)
Q Consensus 206 G~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~-qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~ 284 (441)
+..+.|-..|++|+....++..+...+|.+-+. .++.+.|..+|++++..+-.. .....
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~--------------------~~~~~ 74 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD--------------------PDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---------------------HHHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC--------------------HHHHH
Confidence 348999999999998666676777778888555 667777999999999874110 11233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 285 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
.....+...|+.+.|..+|++++.. ++.+. .......-....=...|+.+.. ..+++|+.+++
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~----l~~~~-~~~~iw~~~i~fE~~~Gdl~~v------~~v~~R~~~~~ 137 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISS----LPKEK-QSKKIWKKFIEFESKYGDLESV------RKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCT----SSCHH-HCHHHHHHHHHHHHHHS-HHHH------HHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh----cCchh-HHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHh
Confidence 4445667889999999999999865 22222 1223344444555555665543 66777777775
No 264
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.24 E-value=8.1 Score=43.89 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 192 SRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 192 ~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
..++++.++....+|++++|..+++-.-...+....+...+-.+|..+|++++|..+|+|++.-
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK 106 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 3566788999999999999996654332222223445566778999999999999999999865
No 265
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=2 Score=42.09 Aligned_cols=105 Identities=17% Similarity=0.106 Sum_probs=73.9
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH-----HHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 232 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA-----TFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 232 ~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a-----l~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
-|+-+..+|+|.||...|+.|+.+...-.- ...| | .|+.+.+.. +.|..+.+...|+|=++++.....
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~l-kEkP--~----e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQL-KEKP--G----EPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHh-ccCC--C----ChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 366778999999999999999987542211 1111 2 144444442 469999999999999999988877
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
|. .||.....|..-|.....-=+-+ +|+.-++++|+.
T Consensus 257 L~--------~~~~nvKA~frRakAhaa~Wn~~------eA~~D~~~vL~l 293 (329)
T KOG0545|consen 257 LR--------HHPGNVKAYFRRAKAHAAVWNEA------EAKADLQKVLEL 293 (329)
T ss_pred Hh--------cCCchHHHHHHHHHHHHhhcCHH------HHHHHHHHHHhc
Confidence 74 68888888877776665443333 457788887765
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.13 E-value=0.56 Score=49.85 Aligned_cols=89 Identities=12% Similarity=0.013 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhhccccCCCCC----chh-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh
Q 013549 81 SYSQGMLVLEQCLSTQPSDGQLA----ESW-------------RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (441)
Q Consensus 81 ~y~eAl~~~eqaL~i~~~~~g~~----h~~-------------~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg 143 (441)
--.||+.+|+|+++.-+..+|.+ |.+ ..-+-..||...++.|+.+||+++++..++..+. .
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~--~ 292 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN--L 292 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc--c
Confidence 36799999999999888888754 211 1233457899999999999999999998765542 1
Q ss_pred hhHHHHHHHHHHHHhcCCcchhHHHHHH
Q 013549 144 VRVAAMEALAGLYLQLGQDDTSSVVADK 171 (441)
Q Consensus 144 ~~~~al~~La~l~~~~G~~~~A~~l~~~ 171 (441)
......+||...+..++.|+++..+..+
T Consensus 293 ~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 293 DNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1123568899999999999887766543
No 267
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=1 Score=43.82 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=70.7
Q ss_pred HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549 204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 283 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al 283 (441)
.-.+|+.|+..|.+++...+..+.--.|-+..+....+|+..+.--+|||++. -. .+-..
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~---~N-----------------~vk~h 81 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD---PN-----------------LVKAH 81 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC---hH-----------------HHHHH
Confidence 45579999999999999655333223455667778999999999999999981 11 23356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
.-||+.......|++|++.+++|.......
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 789999999999999999999998877654
No 268
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.21 E-value=0.24 Score=30.86 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
.+..++|.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678999999999999999988763
No 269
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.74 E-value=6.7 Score=41.94 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=75.8
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549 232 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 311 (441)
Q Consensus 232 ~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e 311 (441)
=..+++.+|+|.+|..+..+. .|.++ .+ | -..|+-.+-.+-||||-++..+|.|.-+..+|++||.-.-
T Consensus 246 Ksq~eY~~gn~~kA~KlL~~s-ni~~~-~g-------~--~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 246 KSQLEYAHGNHPKAMKLLLVS-NIHKE-AG-------G--TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred HHHHHHHhcchHHHHHHHHhc-ccccc-cC-------c--cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 366788899999999887653 33111 11 1 0112211111237999999999999999999999996333
Q ss_pred HhhCCC-Cch---------HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 312 ELFGSH-HPK---------VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 312 ~~lG~~-HP~---------va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
..+-.. .|. --..+.|.|..|-.-||.-.| -..|.+|...+..
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~A------fqCf~~av~vfh~ 367 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLA------FQCFQKAVHVFHR 367 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHH------HHHHHHHHHHHhc
Confidence 332222 222 124688999999999998776 7888899888754
No 270
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=3.4 Score=40.54 Aligned_cols=117 Identities=16% Similarity=0.024 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~ 186 (441)
...++..-|+-++.+|+|.||+..|+.|+...+.. .. - ++-++..|-+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L-----------~l-----k----------------EkP~e~eW~e 224 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNL-----------QL-----K----------------EKPGEPEWLE 224 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH-----------Hh-----c----------------cCCCChHHHH
Confidence 34567888899999999999999999885443221 00 0 0111101111
Q ss_pred hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 187 YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 187 ~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
-+..+.-...+..-.++..|+|=++++....+|..++...-+.+.-|...-.--+.+||+.-++++|+.
T Consensus 225 Ldk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 225 LDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 000000000111223457899999999999999977666566666677777778899999999999987
No 271
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.76 E-value=1.2 Score=35.81 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=48.8
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 315 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG 315 (441)
+.+-+..+|+...++||.... . . ++ ...++..|.++|.+.|+|.+...+-.+=++|.++.=.
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~---~-----~-------~~--rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKIT---D-----R-------ED--RFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred hccchHHHHHHHHHHHHhhcC---C-----h-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 367788899999999998731 1 0 11 4557889999999999999999999999999887533
No 272
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.39 E-value=25 Score=35.11 Aligned_cols=200 Identities=18% Similarity=0.181 Sum_probs=123.8
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH-------Hhhhhhhh------h---h-HHHHHHHHHHHHh
Q 013549 96 QPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE-------NFKNSILG------V---R-VAAMEALAGLYLQ 158 (441)
Q Consensus 96 ~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral-------~i~~~~lg------~---~-~~al~~La~l~~~ 158 (441)
+...-|.-=|--.+.++.. +....|.-.+.+..+...+ .+.+.... . + ....+.+++++.-
T Consensus 112 yp~rrGSmVPFsmR~lhAe--~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG 189 (366)
T KOG2796|consen 112 YPGRRGSMVPFSMRILHAE--LQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLG 189 (366)
T ss_pred CCCCcCccccHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444445555555544 3445676666665544332 22221111 1 1 1245667888888
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----ccCCc-hHHHHHH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-----EEGCT-GSAALSY 232 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----~~~~~-~~~a~~~ 232 (441)
+++|.-+...+.+..+ +..+.. +.+. .-+|.+...-|+.+-|+..|+++-+ .+.+. ..+.-+.
T Consensus 190 ~kEy~iS~d~~~~vi~---~~~e~~----p~L~----s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIK---YYPEQE----PQLL----SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred chhhhhhHHHHHHHHH---hCCccc----HHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 8888888877776653 221211 1221 1235555678999999999997765 11111 2334566
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
+.+|--+.+|.+|--.|-+.+.. |+. +..+.||=|..+...|+..+|.+-.++++.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~--------D~~------------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--- 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRM--------DPR------------NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--- 315 (366)
T ss_pred hhheecccchHHHHHHHhhcccc--------CCC------------chhhhchHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 77888899999998888876644 111 2345678888888899999999999988876
Q ss_pred hhCCCCchHHHHHHHHHHHHH
Q 013549 313 LFGSHHPKVGVVLTCLALMFR 333 (441)
Q Consensus 313 ~lG~~HP~va~~l~nLa~ly~ 333 (441)
-|.|-.+-+.+.||-.+|.
T Consensus 316 --~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 316 --DPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred --CCccchhhhHHHHHHHHHH
Confidence 3566666677778877774
No 273
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.92 E-value=41 Score=37.09 Aligned_cols=313 Identities=14% Similarity=0.070 Sum_probs=177.9
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
|.....||.++.. ...++++|+..++|+..+-.+ .+-.+ -.-.+-.-++.+|..++... |.....+.+...+..
T Consensus 59 a~~~l~la~iL~~---eT~n~~~Ae~~L~k~~~l~~~-~~~~d-~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 59 ARVRLRLASILLE---ETENLDLAETYLEKAILLCER-HRLTD-LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhccc-cchHH-HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 4445668888743 345799999999999987765 22111 12344445589999999888 999999988777651
Q ss_pred hhhh-HHHHHHHH--HHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549 142 LGVR-VAAMEALA--GLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218 (441)
Q Consensus 142 lg~~-~~al~~La--~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a 218 (441)
+.. ..-...+. .++...+++..|...++....+....++ ..+...+....+++.+..|..+++.+..+++
T Consensus 133 -~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d------~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 133 -GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD------PAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred -CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 111 11222222 2333336777788877777666654332 1222333345677788899999999999988
Q ss_pred hh---c-----cCCch--HHHHHHHH--HHHHccChHHHHHHHHHHHHHHHhhcccC-----CCC---------------
Q 013549 219 QE---E-----EGCTG--SAALSYGE--YLHATRNFLLAKKFYQKVIEVLAEQKDFS-----DMN--------------- 266 (441)
Q Consensus 219 L~---~-----~~~~~--~~a~~~a~--~~~~qG~y~eA~~ly~rAL~i~~~~~~~~-----~~~--------------- 266 (441)
.. . ..+.+ .+..-+-. .+-.+|++..+.+..++-=..+.+.+... +++
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 66 1 11111 12222222 34467888888877665544433333311 000
Q ss_pred --CccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH------------------HHHH
Q 013549 267 --TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG------------------VVLT 326 (441)
Q Consensus 267 --~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va------------------~~l~ 326 (441)
.+.-.-+.-++..+-.+.-=|..+...|..++|++++.++|...++..+...+... .++.
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~ 365 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF 365 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH
Confidence 00000011122222222222666777788889999999999999999832222111 1333
Q ss_pred HHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCC-CcchHhh-hccHHHHHHHhccHHHHHHHhh
Q 013549 327 CLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLE-SEGVETK-VDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 327 nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~-~~~~~~~-l~nl~~~~~~~g~yaeal~~~~ 393 (441)
.++....-.|++.++ ..............+.. .+..... .--.|+.+...|+.+.|+..+.
T Consensus 366 y~~~~~~~~~~~~~a------~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 366 YQIWCNFIRGDWSKA------TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHCcCHHHH------HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 445556666776654 55666555554332221 1111112 2235666778889998988774
No 274
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.89 E-value=1.2 Score=43.20 Aligned_cols=60 Identities=18% Similarity=0.081 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhhhhh
Q 013549 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~~~~ 141 (441)
-++|...|++|+.+..+.+++.||-......|.+.+|++ .|+.++|+++.++|++-+-+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 478999999999999998999999999999999999866 899999999999986655443
No 275
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=88.43 E-value=6.5 Score=38.93 Aligned_cols=130 Identities=8% Similarity=0.050 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDT-SSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~-A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
+..+.....+.+..+.|...|++|+.-... ... .+-..|.+.+..+++.+ |..++++.++.+.... .-
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~--vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~-------~~ 72 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYH--VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP-------DF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---TH--HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H-------HH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH-------HH
Confidence 444556666667799999999999633221 122 33444555455455555 8888888876553322 11
Q ss_pred hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---chHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549 190 VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC---TGSAALSYGEYLHATRNFLLAKKFYQKVIEVL 256 (441)
Q Consensus 190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~---~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~ 256 (441)
+..+ + -..+..|+.+.|..+|++++..-+. ...+...+...-...|+.+....+++|+.+.+
T Consensus 73 ~~~Y---~--~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 73 WLEY---L--DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHH---H--HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHH---H--HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2111 1 1124789999999999999993222 23345667777788999999999999999884
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.40 E-value=14 Score=36.75 Aligned_cols=150 Identities=14% Similarity=0.066 Sum_probs=87.7
Q ss_pred HHHHHHHHhhhccccCCC--CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013549 84 QGMLVLEQCLSTQPSDGQ--LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ 161 (441)
Q Consensus 84 eAl~~~eqaL~i~~~~~g--~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~ 161 (441)
.-....+..|.++...+. .....++.++..++.+.+.+|+|+-|...+.++.......-.........-+-+.+..|+
T Consensus 120 ~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~ 199 (352)
T PF02259_consen 120 DDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE 199 (352)
T ss_pred cchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC
Confidence 345566666666665554 224468999999999999999999999999988664421100011122334566778898
Q ss_pred cchhHHHHHHHHH-HHHhcC-CCc------------------chhh--hhhHhHHHHHHHHHHHHc------CCHHHHHH
Q 013549 162 DDTSSVVADKCLQ-LCEKHK-PEN------------------YKTY--GAVNSRANAVKGLVELAH------GNLESAES 213 (441)
Q Consensus 162 ~~~A~~l~~~~L~-i~~~~~-~~~------------------~~~~--~~l~~~a~al~gl~~~~q------G~y~eAe~ 213 (441)
..+|....+..+. ...... ... .... .....++....|.....+ ++++++..
T Consensus 200 ~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~ 279 (352)
T PF02259_consen 200 QEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILK 279 (352)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 8888877777765 222221 000 0001 111112222233333345 88899999
Q ss_pred HHHhhhhccCCchHHHHHHH
Q 013549 214 FFKGLQEEEGCTGSAALSYG 233 (441)
Q Consensus 214 l~~~aL~~~~~~~~~a~~~a 233 (441)
.|+++....+....+...+|
T Consensus 280 ~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 280 YYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred HHHHHHHhChhHHHHHHHHH
Confidence 99999885444444444444
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.19 E-value=9.9 Score=40.76 Aligned_cols=159 Identities=13% Similarity=0.013 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhcccc--CC--CCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549 84 QGMLVLEQCLSTQPS--DG--QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (441)
Q Consensus 84 eAl~~~eqaL~i~~~--~~--g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~ 159 (441)
|.+.+|.--|+.+.- -+ ..|+-.-+. .+-.--++.-+...-++.-++||++.+..- .++.-|+.= .-
T Consensus 143 epLTyYDMNLSAQDHQtfFtcd~D~~r~Aq---~IMq~AWRERnp~aRIkaA~eALei~pdCA----dAYILLAEE--eA 213 (539)
T PF04184_consen 143 EPLTYYDMNLSAQDHQTFFTCDTDALRPAQ---EIMQKAWRERNPQARIKAAKEALEINPDCA----DAYILLAEE--EA 213 (539)
T ss_pred CCcccccCCccccccceeEecCCCccCHHH---HHHHHHHhcCCHHHHHHHHHHHHHhhhhhh----HHHhhcccc--cc
Confidence 566666666654311 11 123322232 334445778888888888889988876541 112111110 01
Q ss_pred CCcchhHHHHHHHHHHHHhcCCCcc---------hh----hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--C
Q 013549 160 GQDDTSSVVADKCLQLCEKHKPENY---------KT----YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG--C 224 (441)
Q Consensus 160 G~~~~A~~l~~~~L~i~~~~~~~~~---------~~----~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~--~ 224 (441)
-...+++.+++++++..+....... +. ......+++.-.++.....|+.+||.++|+..++..+ .
T Consensus 214 ~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~ 293 (539)
T PF04184_consen 214 STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD 293 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc
Confidence 1246788888888877654442110 00 0011122232345555689999999999999998433 3
Q ss_pred chHHHHHHHHHHHHccChHHHHHHHHH
Q 013549 225 TGSAALSYGEYLHATRNFLLAKKFYQK 251 (441)
Q Consensus 225 ~~~~a~~~a~~~~~qG~y~eA~~ly~r 251 (441)
+.++..++-+.+-.+++|.++..+..|
T Consensus 294 ~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 294 NLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 456677888899999999999988777
No 278
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.18 E-value=2.3 Score=41.24 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH-HHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 296 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly-~~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
-++|...|++|+.+.++.+.|.||--....-|.+..| .-.|+.++| +..|..-|..|+.-+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A--~~ia~~afd~a~~~l~~ 205 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKA--IEIAKQAFDEAISELDT 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHH--HHHHHHHHHHHHHGGGG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHH--HHHHHHHHHHHHhhhcc
Confidence 3679999999999999999999999887777777766 558888887 45566666666665543
No 279
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.87 E-value=3.3 Score=42.79 Aligned_cols=109 Identities=21% Similarity=0.226 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHH------------HHHHHHHHHhhchhhhhhhHHH
Q 013549 280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL------------TCLALMFRNKAMQEHSSALLIQ 347 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l------------~nLa~ly~~qG~~eeA~~~~~A 347 (441)
+.++.-++.++..||+++.|-++.+|||-++++.+.+.=+...... .|- .+|..--+|-.+ ..-
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR-~fflal~r~i~~---L~~ 115 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR-QFFLALFRYIQS---LGR 115 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch-HHHHHHHHHHHH---HHh
Confidence 5689999999999999999999999999999987654332101000 010 122222222221 122
Q ss_pred HHHHHHHHHHhhcC-CCCCc-chHhhhccHHHHHHHhccHHHHHHHh
Q 013549 348 EGLYRRALEFLKAP-PLESE-GVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 348 e~ly~rAL~i~~~~-~~~~~-~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
.+.++.|+++.|-. ..|.. |..-++--++...+..++|+-.+...
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~ 162 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFS 162 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHH
Confidence 67899999998842 23332 43345555666666667777666654
No 280
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.68 E-value=1 Score=31.10 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l 142 (441)
|.++..||.+-...++|.+|++-|++++.|.++.+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999999998887653
No 281
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.50 E-value=4.5 Score=42.15 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=85.9
Q ss_pred HHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhH
Q 013549 87 LVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSS 166 (441)
Q Consensus 87 ~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~ 166 (441)
.-++.-|+.....++.+ ++=+.+..+|.-|.+-|+.+.|+..|-|+-+-+.+. +.....+-|+.-+-+.+|++..-.
T Consensus 131 e~L~~eLk~yK~n~iKE--siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-khvInm~ln~i~VSI~~~nw~hv~ 207 (466)
T KOG0686|consen 131 EKLDNELKSYKDNLIKE--SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-KHVINMCLNLILVSIYMGNWGHVL 207 (466)
T ss_pred HHHHHHHHHhhcchhhH--HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-HHHHHHHHHHHHHHHhhcchhhhh
Confidence 34455566665555444 688899999999999999999999999987777664 333344455556656678876665
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 013549 167 VVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE 220 (441)
Q Consensus 167 ~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~ 220 (441)
.+..++-..... . . .-...+..+.....|++.+..++|.+|..+|-.+..
T Consensus 208 sy~~~A~st~~~-~-~--~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 208 SYISKAESTPDA-N-E--NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHhCchh-h-h--hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 555555322100 0 0 001233345566789999999999999999988766
No 282
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.45 E-value=12 Score=35.47 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=52.9
Q ss_pred HcCCHHHHHHHHHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 204 AHGNLESAESFFKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
.+-.=++|..-|.+.=. ..-.++..-..+|..|. .-+-++|+.+|-+||+.. .. + + +.+| ..
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~---~~--~-~-----~~n~-----ei 180 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS---NP--D-D-----NFNP-----EI 180 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc---CC--C-C-----CCCH-----HH
Confidence 45445677776666544 22233444556665554 778999999999999993 32 1 0 1122 34
Q ss_pred HHHHHHHHHHcCCHHHH
Q 013549 283 TFALGQLEAHMGNFGDA 299 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eA 299 (441)
+..|+.+|+.+|+|++|
T Consensus 181 l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHhcchhhh
Confidence 68999999999999987
No 283
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=87.36 E-value=7.5 Score=46.43 Aligned_cols=241 Identities=17% Similarity=0.154 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh----
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK---- 178 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~---- 178 (441)
..++..-.+|+++---|+|.+|+..|..|+.+.+.. ++- ..+++.++.+..-++-...-......+-.+...
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~-~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS-NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc-CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 578888899999999999999999999999888764 332 346676654422222111000000001000000
Q ss_pred --cCCCc--------chhhhhhHh---HHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCc-----hHHHHHHHHHHHHc
Q 013549 179 --HKPEN--------YKTYGAVNS---RANAVKGLVELAHGNLESAESFFKGLQE-EEGCT-----GSAALSYGEYLHAT 239 (441)
Q Consensus 179 --~~~~~--------~~~~~~l~~---~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~-----~~~a~~~a~~~~~q 239 (441)
..+.. +........ .-..+..+...-.-.+++|..+|.++.. ..... ..+...++.++..+
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 00000 000000000 0000112222335568999999999986 11112 24456677777777
Q ss_pred c--------------------ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549 240 R--------------------NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 299 (441)
Q Consensus 240 G--------------------~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA 299 (441)
. .-.++-.+..||+.+. .. .+. +. ..+..+..||.+|...|=.-++
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~---l~-----~l~-----~~-dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQ---LK-----DLS-----VE-DQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhh---hh-----hCC-----HH-HHHHHHHHHHHHHHhcchhHHH
Confidence 7 7888999999999883 22 121 22 2456788999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhh----h-----h-hhHHHHHHHHHHHHHhhcC
Q 013549 300 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH----S-----S-ALLIQEGLYRRALEFLKAP 361 (441)
Q Consensus 300 e~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ee----A-----~-~~~~Ae~ly~rAL~i~~~~ 361 (441)
--+.+.++...-..+...|+++...|..+..+|.-....++ + . +...+..+.+.++.+.++.
T Consensus 465 AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l 536 (1185)
T PF08626_consen 465 AFVLRELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEAL 536 (1185)
T ss_pred HHHHHHHHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhc
Confidence 99999999888776755567777777777777765322211 0 1 3455677888888887764
No 284
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=87.28 E-value=5.7 Score=34.85 Aligned_cols=89 Identities=13% Similarity=0.023 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-------HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-------GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-------a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
.++|......+++-.+.-+|++||.+-++.--.+.-++ ..+..|||..|+.+|+.+=. ..+.+=|-+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yE------LkYLqlASE 78 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYE------LKYLQLASE 78 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHH------HHHHHHHHH
Confidence 47888888999999999999999999999843333332 35789999999999986543 444554544
Q ss_pred HhhcCCCCCcc--hHhhhccHHHH
Q 013549 357 FLKAPPLESEG--VETKVDRTDIV 378 (441)
Q Consensus 357 i~~~~~~~~~~--~~~~l~nl~~~ 378 (441)
-.-+..|.=|. .-.-+++++.+
T Consensus 79 ~VltLiPQCp~~~C~afi~sLGCC 102 (140)
T PF10952_consen 79 KVLTLIPQCPNTECEAFIDSLGCC 102 (140)
T ss_pred HHHHhccCCCCcchHHHHHhhhcc
Confidence 43333443332 23334444443
No 285
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.95 E-value=33 Score=33.71 Aligned_cols=215 Identities=17% Similarity=0.105 Sum_probs=0.0
Q ss_pred HcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHH
Q 013549 120 ESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKG 199 (441)
Q Consensus 120 ~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~g 199 (441)
.+++|++|++++.....+.-++ |++..+.++..-.++++++......++...- +..
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~------------------~Q~~sg~DL~~lliev~~~~~~~~~~~~~~r------l~~ 57 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKH------------------GQYGSGADLALLLIEVYEKSEDPVDEESIAR------LIE 57 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHT------------------T-HHHHHHHHHHHHHHHHHTT---SHHHHHH------HHH
T ss_pred ccccHHHHHHHHHHHHHHHHHC------------------CCcchHHHHHHHHHHHHHHcCCCCCHHHHHH------HHH
Q ss_pred HHHHHcCCHHHHHHHHHhhhh------ccCCchHHHHHHHHHHHHccChHHHHHHHHHH--------HHHHHhhcccCCC
Q 013549 200 LVELAHGNLESAESFFKGLQE------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKV--------IEVLAEQKDFSDM 265 (441)
Q Consensus 200 l~~~~qG~y~eAe~l~~~aL~------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rA--------L~i~~~~~~~~~~ 265 (441)
++...-..-.+=.++..++++ ...-++....-+|..|..-|+|.+|+.++-.. ............+
T Consensus 58 l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~ 137 (260)
T PF04190_consen 58 LISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYP 137 (260)
T ss_dssp HHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCC
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHH---------HHHHHHHHHHHhh
Q 013549 266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV---------VLTCLALMFRNKA 336 (441)
Q Consensus 266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~---------~l~nLa~ly~~qG 336 (441)
+..+ -.+.-.=.-|...|+...|...+..-++..-+. ||.+.. .+-|...+.-..=
T Consensus 138 ~e~d-----------lfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~----~p~~~~~~~~~~~~~PllnF~~lLl~t~ 202 (260)
T PF04190_consen 138 SEAD-----------LFIARAVLQYLCLGNLRDANELFDTFTSKLIES----HPKLENSDIEYPPSYPLLNFLQLLLLTC 202 (260)
T ss_dssp --HH-----------HHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH-------EEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred cchh-----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc----CcchhccccCCCCCCchHHHHHHHHHHH
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHH
Q 013549 337 MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL 380 (441)
Q Consensus 337 ~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~ 380 (441)
+.+.+ ++|..-.+-++......|....-++-++.+|.
T Consensus 203 e~~~~-------~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yF 239 (260)
T PF04190_consen 203 ERDNL-------PLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYF 239 (260)
T ss_dssp HHT-H-------HHHHHHHHHTHH---HHHHTHHHHHHHHHHHH
T ss_pred hcCcH-------HHHHHHHHHhCccccccHHHHHHHHHHHHHHC
No 286
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.51 E-value=2.1 Score=45.57 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=73.0
Q ss_pred HHHHHHcCCHHHHHHHHHhhhh-ccC---Cch----HHH-HHHHHHHHHccChHHHHHHHHHHHHHHHhhc--ccCCCCC
Q 013549 199 GLVELAHGNLESAESFFKGLQE-EEG---CTG----SAA-LSYGEYLHATRNFLLAKKFYQKVIEVLAEQK--DFSDMNT 267 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~-~~~---~~~----~~a-~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~--~~~~~~~ 267 (441)
.-.++..|+|..|.+++..+=. .++ -++ -.. +|+|-++...|.|.-+.-+|++||.-.+... ++.+.+.
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 3445578999999888876533 111 122 112 6788899999999999999999996323222 2112221
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549 268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 311 (441)
Q Consensus 268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e 311 (441)
+. ++.. -..-.++|.|.+|.+.|+.-.|-++|.+|...|.
T Consensus 327 ~t---ls~n-ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 327 FT---LSQN-KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred ee---hhcc-cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 11 1100 0122478999999999999999999999998875
No 287
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.12 E-value=3.7 Score=40.07 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
..|.++..-+--+ | -.-+|+.|+..|-+++.+ .|.++.-+.|-+..|...-+|+..++-..+++.+.+
T Consensus 8 ~~a~qlkE~gnk~--f--~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~ 75 (284)
T KOG4642|consen 8 ESAEQLKEQGNKC--F--IPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP 75 (284)
T ss_pred hHHHHHHhccccc--c--chhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh
Confidence 3344444444444 2 134699999999999964 466788899999999999999999999999988865
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Q 013549 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK 180 (441)
Q Consensus 140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~ 180 (441)
.. +....-|+....+...|+++...++++.++...+.
T Consensus 76 N~----vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 76 NL----VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HH----HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 53 34556677778888999999999999998887665
No 288
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.70 E-value=1.5 Score=36.06 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhhCCCCchHHHHHHHHHHHH
Q 013549 280 LAATFALGQLEAHMGNFGDAEEILTRTLTK---------------TEELFGSHHPKVGVVLTCLALMF 332 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i---------------~e~~lG~~HP~va~~l~nLa~ly 332 (441)
+.+...||..+...|+|++|.+.+.+.+.. .=+.+|+.||-|...-..|+++.
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence 357889999999999999999988665532 22468999999988888877764
No 289
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.42 E-value=5.6 Score=34.91 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh-----------hhhHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSIL-----------GVRVAAMEALAGLYLQLGQDDTSSVVADKC 172 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l-----------g~~~~al~~La~l~~~~G~~~~A~~l~~~~ 172 (441)
+..+|......+++-.++-+||+|+.+.+... -+.+.+..||+..+..+|+.+-.+.|.+-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 56788889999999999999999998877541 124678899999999999987777766544
No 290
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.03 E-value=44 Score=32.58 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 013549 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~----qG~y~eA~e~~~ral~i~ 138 (441)
....+++..|........++.+|+.+|+++.. ........+||..|.. ..++.+|...|+++-...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 45666777664333344458899999996653 2345568889999877 448999999999985543
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCC--------cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH----cC
Q 013549 139 NSILGVRVAAMEALAGLYLQLGQ--------DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA----HG 206 (441)
Q Consensus 139 ~~~lg~~~~al~~La~l~~~~G~--------~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~----qG 206 (441)
... + ..+...++..|.. |. ...|..++.++-.. ....+....|..|.. --
T Consensus 144 ~~~-a--~~~~~~l~~~~~~-g~~~~~~~~~~~~A~~~~~~aa~~--------------~~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 144 NVE-A--ALAMYRLGLAYLS-GLQALAVAYDDKKALYLYRKAAEL--------------GNPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred Chh-H--HHHHHHHHHHHHc-ChhhhcccHHHHhHHHHHHHHHHh--------------cCHHHHHHHHHHHHcCCCCCc
Confidence 221 1 1124455555433 32 11233333332110 011222334544422 23
Q ss_pred CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHcc---------------ChHHHHHHHHHHHHH
Q 013549 207 NLESAESFFKGLQEEEGCTGSAALSYGEYLHATR---------------NFLLAKKFYQKVIEV 255 (441)
Q Consensus 207 ~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG---------------~y~eA~~ly~rAL~i 255 (441)
++.+|..+|.++-+..+ ......++ ++...| +...|..+|.++-..
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 78999999999988443 45556666 555555 566666666665543
No 291
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=84.00 E-value=1.5 Score=40.82 Aligned_cols=51 Identities=24% Similarity=0.211 Sum_probs=39.7
Q ss_pred HhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh-hcCCCCCcch
Q 013549 312 ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL-KAPPLESEGV 368 (441)
Q Consensus 312 ~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~-~~~~~~~~~~ 368 (441)
..-|.+.|.-..+|.||-.-|.+||+|+-| .++.++||+-+ +..+.+||++
T Consensus 130 ~~~~~E~~~rl~tL~nlv~q~~~q~r~eva------v~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 130 QSQGYEIPARLRTLHNLVIQYESQGRYEVA------VPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp --S-TTS-HHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHHH-SSSHHH
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHhhhcccCC
Confidence 456789999999999999999999999865 89999999998 4557788864
No 292
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=83.03 E-value=4.3 Score=32.34 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=24.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHH
Q 013549 292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL 325 (441)
Q Consensus 292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l 325 (441)
..|+|++|.++|.+||+.+.. ...|..-.++
T Consensus 18 ~~gny~eA~~lY~~ale~~~~---ekn~~~k~~i 48 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCIN---TSNETMDQAL 48 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHHH---hcChhhHHHH
Confidence 459999999999999999998 4566655444
No 293
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=82.87 E-value=2.8 Score=42.35 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=48.7
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
..+|+.|+|..+|+.|++-.+.++.+...+|.+...-.+.-+|..+|-|||.|
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 37999999999999999987888889999998888788999999999999998
No 294
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.39 E-value=57 Score=32.88 Aligned_cols=27 Identities=22% Similarity=0.075 Sum_probs=15.1
Q ss_pred CCchHHHHHHHHHHHHccChHHHHHHH
Q 013549 223 GCTGSAALSYGEYLHATRNFLLAKKFY 249 (441)
Q Consensus 223 ~~~~~~a~~~a~~~~~qG~y~eA~~ly 249 (441)
+...++++.+|..++.+|++++|.+.+
T Consensus 233 Pdd~~aa~~lA~~~~~~g~~e~Ale~L 259 (304)
T COG3118 233 PDDVEAALALADQLHLVGRNEAALEHL 259 (304)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334455555666666666666665544
No 295
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=82.24 E-value=4.6 Score=39.47 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhh
Q 013549 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES-GNYVEAIEKLQKVENFK 138 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~q-G~y~eA~e~~~ral~i~ 138 (441)
-++|...|++|+++..+.+.+.||-......|.+.+|++. ++-++|+++-++|++-+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4589999999999988889999999999999999998875 99999999998885544
No 296
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=82.19 E-value=28 Score=35.53 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=83.9
Q ss_pred HHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHH---HHHHHHhcCC
Q 013549 85 GMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEA---LAGLYLQLGQ 161 (441)
Q Consensus 85 Al~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~---La~l~~~~G~ 161 (441)
=+.-++...+-.+..+|+. .+...+.+.|..|++.|+-+.|++.+.+...-.-+ +|.+...... |+-.| ++
T Consensus 83 ki~eld~~iedaeenlGE~--ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs-~g~kiDVvf~~iRlglfy---~D 156 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGES--EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVS-LGHKIDVVFYKIRLGLFY---LD 156 (393)
T ss_pred HHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh-cccchhhHHHHHHHHHhh---cc
Confidence 3444555555555555544 58899999999999999999999999887544333 3443333333 33334 44
Q ss_pred cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Q 013549 162 DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE 222 (441)
Q Consensus 162 ~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~ 222 (441)
.+--....+++-.+.++.+ +|+ ...|.+.-.|+...+..+|.+|-.+|-.++.+.
T Consensus 157 ~~lV~~~iekak~liE~Gg--DWe----RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 157 HDLVTESIEKAKSLIEEGG--DWE----RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHHHHhCC--Chh----hhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 4444555666666676666 353 234455567888888999999999999999843
No 297
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=81.82 E-value=6.5 Score=38.45 Aligned_cols=64 Identities=6% Similarity=0.000 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH-HhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549 296 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR-NKAMQEHSSALLIQEGLYRRALEFLKAP 361 (441)
Q Consensus 296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~-~qG~~eeA~~~~~Ae~ly~rAL~i~~~~ 361 (441)
-++|.+.|++|+++.++.+.|.||--....-|.+..|. -+++.++| ...|..-|..|+.-+...
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A--~~lAk~afd~Ai~~ld~l 208 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRA--CNLAKQAFDEAIAELDTL 208 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhcc
Confidence 35899999999999999999999998877777766555 45888877 445666677776665543
No 298
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.73 E-value=15 Score=29.24 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMF 332 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~l-G~~HP~va~~l~nLa~ly 332 (441)
+..-|.-.-..|+|++|..+|.+||+.+...+ +...|.....+..--.-|
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY 59 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEY 59 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 44556667778999999999999999999975 666666666655444444
No 299
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.36 E-value=1.9 Score=46.72 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=78.9
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCch-HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 199 GLVELAHGNLESAESFFKGLQEEEGCTG-SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~~~~~~-~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
|++...+|+-..|..++++|+...+... ....++|+++...|-...|-.+..++|+|. - .++
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~----~--sep----------- 676 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN----S--SEP----------- 676 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc----c--cCc-----------
Confidence 4444569999999999999998433222 235678888888888999999999999993 1 111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCL 328 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nL 328 (441)
-+...+|..|..+.+.+.|.+.|++|++. .++.|..-..|--+
T Consensus 677 ---l~~~~~g~~~l~l~~i~~a~~~~~~a~~~-----~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 677 ---LTFLSLGNAYLALKNISGALEAFRQALKL-----TTKCPECENSLKLI 719 (886)
T ss_pred ---hHHHhcchhHHHHhhhHHHHHHHHHHHhc-----CCCChhhHHHHHHH
Confidence 13468899999999999999999999974 46666666555533
No 300
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.15 E-value=9.3 Score=39.02 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESW-RGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~-~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
+|...-.=+.-|.++ -+|..|+..|..+|... ...|+ -+.+|+|.|......|+|..|+.-..+++.+.+
T Consensus 80 ~Aen~KeeGN~~fK~----Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P 150 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKE----KRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP 150 (390)
T ss_pred HHHHHHHHhHHHHHh----hhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 444444445555332 26999999999999754 33444 577899999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 013549 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL 175 (441)
Q Consensus 140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i 175 (441)
.++... ..=+-++.++.+.++|..+++..+.+
T Consensus 151 ~h~Ka~----~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 151 THLKAY----IRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred chhhhh----hhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 775432 22223344445566666666665544
No 301
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.59 E-value=2.4 Score=46.04 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=72.7
Q ss_pred HHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh
Q 013549 66 INYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR 145 (441)
Q Consensus 66 ~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~ 145 (441)
.|+|-+||| .+|+-..|+.++..|+-.. |.. --..+-|||.++..-|-..+|-.++.+++.+..+..
T Consensus 610 ln~aglywr---~~gn~~~a~~cl~~a~~~~-----p~~--~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep--- 676 (886)
T KOG4507|consen 610 LNEAGLYWR---AVGNSTFAIACLQRALNLA-----PLQ--QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP--- 676 (886)
T ss_pred eecccceee---ecCCcHHHHHHHHHHhccC-----hhh--hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc---
Confidence 477889998 6899999999999999644 222 234588999999999999999999999988874431
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 013549 146 VAAMEALAGLYLQLGQDDTSSVVADKCLQL 175 (441)
Q Consensus 146 ~~al~~La~l~~~~G~~~~A~~l~~~~L~i 175 (441)
-....++..|..+++.+.|...+..+++.
T Consensus 677 -l~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 677 -LTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred -hHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 13345666777777887777777777644
No 302
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=80.44 E-value=16 Score=28.86 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=35.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHH
Q 013549 286 LGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMF 332 (441)
Q Consensus 286 Lg~ly~~qG~y~eAe~l~~rAL~i~e~~l-G~~HP~va~~l~nLa~ly 332 (441)
-|.-.-..|+|++|..+|.++|+.+...+ .+..|..-..+..-..-|
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~ey 59 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQY 59 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 33444456999999999999999999975 777777766666444444
No 303
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.28 E-value=17 Score=35.31 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh--hhhhHHHHHHHHHHHHhcC
Q 013549 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI--LGVRVAAMEALAGLYLQLG 160 (441)
Q Consensus 83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~--lg~~~~al~~La~l~~~~G 160 (441)
...++++++|.+.+.+.. .+-........||..|...|+|++|..+|+.+.....+. ..+....+..+..++..+|
T Consensus 155 ~~iI~lL~~A~~~f~~~~--~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYG--QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 367888888888776654 344567777899999999999999999999986554422 1122334555666666666
Q ss_pred Ccc
Q 013549 161 QDD 163 (441)
Q Consensus 161 ~~~ 163 (441)
+.+
T Consensus 233 ~~~ 235 (247)
T PF11817_consen 233 DVE 235 (247)
T ss_pred CHH
Confidence 543
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.27 E-value=1.1e+02 Score=34.57 Aligned_cols=57 Identities=14% Similarity=0.036 Sum_probs=42.1
Q ss_pred CCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHH
Q 013549 101 QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVA 169 (441)
Q Consensus 101 g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~ 169 (441)
+.++.....+.++||..+.++-+|.+|.+.|.+. +. .++++.+++.+.++++-+.+.
T Consensus 789 d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~--------~~----~e~~~ecly~le~f~~LE~la 845 (1189)
T KOG2041|consen 789 DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC--------GD----TENQIECLYRLELFGELEVLA 845 (1189)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cc----hHhHHHHHHHHHhhhhHHHHH
Confidence 4667778899999999999999999999999874 21 245556666656665555443
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.93 E-value=66 Score=31.85 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=80.3
Q ss_pred HHHcCCHHHHHHHHHhhhhc----cCCchHHHHHHHHHHHHccChHHHHHHHHHHHH-HHHhhcccCCCCCc--------
Q 013549 202 ELAHGNLESAESFFKGLQEE----EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIE-VLAEQKDFSDMNTL-------- 268 (441)
Q Consensus 202 ~~~qG~y~eAe~l~~~aL~~----~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~-i~~~~~~~~~~~~l-------- 268 (441)
...+|+++-|...+.++... ....+.+...++.+++.+|+-.+|....+..+. .............+
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 35799999999999998872 222566778889999999999999999999988 32211000000000
Q ss_pred ---cccc--cchhHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549 269 ---GSCN--MALEEVALAATFALGQLEAHM------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 335 (441)
Q Consensus 269 ---g~~~--~~~~~~~~~al~nLg~ly~~q------G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q 335 (441)
...+ .........++.-+|.-...+ ++++++...|++|..+ +|.....+..+|..+...
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence 0000 000111223455666666666 7788888888888766 566666777777776554
No 306
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=79.89 E-value=25 Score=37.14 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH-HHHHHH--HHHHHHHHHcCCHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE-VALAAT--FALGQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~-~~~~al--~nLg~ly~~qG~y~eAe~l~~ 304 (441)
+++.=|.-++.||+|..|.--|.-||+...+ ..+.+++..+ ++++ ..+++. --|...|..+++-+-|...-.
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcsk-g~a~~k~~~~----~~~di~~vaSfIetklv~CYL~~rkpdlALnh~h 252 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSK-GAALSKPFKA----SAEDISSVASFIETKLVTCYLRMRKPDLALNHSH 252 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh-hhhccCCCCC----ChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHh
Confidence 3444567788999999999999999998632 2212222211 1222 233433 368999999999999999999
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh-hhhHHHHHHH
Q 013549 305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS-SALLIQEGLY 351 (441)
Q Consensus 305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA-~~~~~Ae~ly 351 (441)
|++.. .|.+-...-.-|.+++...+|.+| .++++|.-+|
T Consensus 253 rsI~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 253 RSINL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred hhhhc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98753 344444455567889999999886 6666666665
No 307
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.04 E-value=3.5 Score=32.90 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Q 013549 208 LESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAE 258 (441)
Q Consensus 208 y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~ 258 (441)
.++|+.+.+++++.. ..|+|++|.++|..||+.+..
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHHHHH
Confidence 355666666665432 468899999999999998643
No 308
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.03 E-value=3.3 Score=29.50 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
.+||..|..+|+++.|.+++++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5899999999999999999998884
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.87 E-value=4.7 Score=38.23 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCc
Q 013549 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQD 162 (441)
Q Consensus 83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~ 162 (441)
.+|...|-+.= |.....++.....||.+|. .-+-++|+.++.+++++....-.+....+..|+.+|+++|++
T Consensus 123 ~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 123 QEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 45655554432 3344567888999998877 668899999999999888764344556788899999999998
Q ss_pred chhH
Q 013549 163 DTSS 166 (441)
Q Consensus 163 ~~A~ 166 (441)
..|=
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7663
No 310
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=78.45 E-value=28 Score=27.35 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHH
Q 013549 285 ALGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMF 332 (441)
Q Consensus 285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~l-G~~HP~va~~l~nLa~ly 332 (441)
.-|.-.-..|+|++|..+|.+|++.+...+ .+..|.....+..-..-|
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~ey 59 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEY 59 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 334444567999999999999999999986 555676666665544444
No 311
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.43 E-value=88 Score=36.77 Aligned_cols=177 Identities=16% Similarity=0.095 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
+...+|....++|...+|++.|-++ ++...+........+.|.|++-..+..-+ ++...+.+-+..-
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika---------dDps~y~eVi~~a~~~~~~edLv~yL~Ma----Rkk~~E~~id~eL 1172 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA---------DDPSNYLEVIDVASRTGKYEDLVKYLLMA----RKKVREPYIDSEL 1172 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc---------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH----HHhhcCccchHHH
Confidence 4677888888888999999888875 22223344444455667776655544322 2222111111111
Q ss_pred hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh------ccCCc----h-------HHHHH---HHHHHHHccChHHHHHHH
Q 013549 190 VNSRANAVKGLVELAHGNLESAESFFKGLQE------EEGCT----G-------SAALS---YGEYLHATRNFLLAKKFY 249 (441)
Q Consensus 190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~------~~~~~----~-------~~a~~---~a~~~~~qG~y~eA~~ly 249 (441)
-.+|-..++..|-|.+.-..=. +..|. - +...| +|..+-..|+|.-|.+.-
T Consensus 1173 ---------i~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1173 ---------IFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred ---------HHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 1222334444444333321100 00000 0 01112 345566789999999999
Q ss_pred HHHHHHHHhhcccCCCCCccccccchhHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549 250 QKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA------------TFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 315 (441)
Q Consensus 250 ~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a------------l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG 315 (441)
++|-.+.....- .++ |-. .++..++- +-.|-..|.+.|-|+|=+.+++-+|..-+...|
T Consensus 1244 RKAns~ktWK~V-----cfa-Cvd-~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1244 RKANSTKTWKEV-----CFA-CVD-KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred hhccchhHHHHH-----HHH-Hhc-hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 988776432211 111 110 12222222 445667899999999988888877766555444
No 312
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=76.80 E-value=1.4e+02 Score=33.82 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 281 AATFALGQLEAHMGNFGDAEEILTRT------------------LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 281 ~al~nLg~ly~~qG~y~eAe~l~~rA------------------L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
.+..++|..+..+-++++|.++|.++ |+..-+.|.++|| .|--||.++.+-|-.++|
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~----llp~~a~mf~svGMC~qA 871 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSE----LLPVMADMFTSVGMCDQA 871 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccc----hHHHHHHHHHhhchHHHH
Confidence 46789999999999999999999875 3333345666665 456678888888888887
No 313
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.59 E-value=9.5 Score=39.27 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhh
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEH 340 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ee 340 (441)
++.-+...|+-...+++|++|-.-|.+|..+..+++|.+|-.+...+.--|..+..-++.+.
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456788999999999999999999999999999999999999999999999988887764
No 314
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.54 E-value=54 Score=31.75 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch
Q 013549 243 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA--ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 320 (441)
Q Consensus 243 ~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~--al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~ 320 (441)
...++++.+|++.+...+. ..+. ....+|..|...|+|++|..+|+.++..+.+ =|+. .-
T Consensus 155 ~~iI~lL~~A~~~f~~~~~----------------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~-egW~-~l 216 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ----------------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR-EGWW-SL 216 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc----------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-CCcH-HH
Confidence 3678999999998753322 0122 2358999999999999999999999666653 3444 44
Q ss_pred HHHHHHHHHHHHHHhhchhh
Q 013549 321 VGVVLTCLALMFRNKAMQEH 340 (441)
Q Consensus 321 va~~l~nLa~ly~~qG~~ee 340 (441)
...++..|...+...|+.++
T Consensus 217 ~~~~l~~l~~Ca~~~~~~~~ 236 (247)
T PF11817_consen 217 LTEVLWRLLECAKRLGDVED 236 (247)
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 55778888888888888654
No 315
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.38 E-value=97 Score=31.36 Aligned_cols=219 Identities=12% Similarity=0.115 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHh
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR-VAAMEALAGLYLQ 158 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~-~~al~~La~l~~~ 158 (441)
.+|.+|+..|.+.|.-....-...-..--.++.+|+.+|.+.|+|..=-+.....-......-..+ +.....|..-+-.
T Consensus 17 ~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~ 96 (421)
T COG5159 17 NDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPY 96 (421)
T ss_pred hhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCC
Confidence 469999999999998632222222233456789999999999999876555544322222110010 1111122221100
Q ss_pred c-CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHH---HHHHHHHcCCHHHHHHHHHhhhh-----ccC-CchHH
Q 013549 159 L-GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAV---KGLVELAHGNLESAESFFKGLQE-----EEG-CTGSA 228 (441)
Q Consensus 159 ~-G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al---~gl~~~~qG~y~eAe~l~~~aL~-----~~~-~~~~~ 228 (441)
. ...+.-..++..+++-..+.. ..+....+ ...+++..|+|.+|..+..-.+. +.+ ....+
T Consensus 97 ~~dsl~dqi~v~~~~iewA~rEk---------r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 97 SSDSLEDQIKVLTALIEWADREK---------RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred CCccHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 0 001111222333332221111 11111111 12334589999999988877665 222 12222
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL--GQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nL--g~ly~~qG~y~eAe~l~~rA 306 (441)
..--..+|+...+..++..-.--|-... .... | |. .+.+-..| |.+.++--+|.-|-.+|-+|
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~A--------ns~Y--C---Pp--qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea 232 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLA--------NSAY--C---PP--QLQAQLDLLSGILHCDDRDYKTASSYFIEA 232 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHh--------hccC--C---CH--HHHHHHHHhccceeeccccchhHHHHHHHH
Confidence 2222567888888888877665554441 1122 2 22 23333333 67888899999999999999
Q ss_pred HHHHHHhhCCCCchHHHH
Q 013549 307 LTKTEELFGSHHPKVGVV 324 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~ 324 (441)
++.|. +|..|-..-.+
T Consensus 233 ~Egft--~l~~d~kAc~s 248 (421)
T COG5159 233 LEGFT--LLKMDVKACVS 248 (421)
T ss_pred Hhccc--cccchHHHHHH
Confidence 98884 67777554443
No 316
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.38 E-value=5.9 Score=38.24 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=46.9
Q ss_pred HHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 85 GMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 85 Al~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
|+.+|.+|..+ .|+.+..+|.||.++..+|++-+|+=+|-|++...... ..+.+||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf----~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF----PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHH
Confidence 67889999974 46678899999999999999999999999998665432 2356777766544
No 317
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=75.35 E-value=2.2 Score=45.18 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549 246 KKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA-TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 324 (441)
Q Consensus 246 ~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a-l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~ 324 (441)
.++-.++|-|++...+ +.|. + +.- +.--|-+|.++|+|+.-..+++-||+++++.|-|-.|-|+++
T Consensus 315 d~~RmqaLiirerILg--------psh~--d---~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ss 381 (615)
T KOG0508|consen 315 DEMRMQALIIRERILG--------PSHP--D---VSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASS 381 (615)
T ss_pred HHHHHHHHHHHHHHhC--------CCCC--C---ceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHH
Confidence 3566778888655443 2221 1 111 135688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 013549 325 LTCLALMFRNK 335 (441)
Q Consensus 325 l~nLa~ly~~q 335 (441)
+-..|.++..+
T Consensus 382 llsFaelFS~m 392 (615)
T KOG0508|consen 382 LLSFAELFSFM 392 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.02 E-value=1.9e+02 Score=34.51 Aligned_cols=56 Identities=20% Similarity=0.094 Sum_probs=38.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhh-------------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHH
Q 013549 198 KGLVELAHGNLESAESFFKGLQE-------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVI 253 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~-------------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL 253 (441)
.++.|...|+.++|...|+.+.+ +....-..+..+..-+..+|++-||-.+.+..+
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 36677788999999988887766 111122334667777888888888877655544
No 319
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.94 E-value=29 Score=27.64 Aligned_cols=43 Identities=9% Similarity=-0.031 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--hCCCCchHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEEL--FGSHHPKVGVVL 325 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~--lG~~HP~va~~l 325 (441)
+.-.|.-.-..|+|++|..+|+.|++.+-.. ++...|.....+
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~i 53 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTI 53 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4455666777899999999999999999994 554555554433
No 320
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.66 E-value=1.3e+02 Score=32.61 Aligned_cols=171 Identities=11% Similarity=0.052 Sum_probs=89.7
Q ss_pred CCchhHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Q 013549 102 LAESWRGISLLAMSTLL---YESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEK 178 (441)
Q Consensus 102 ~~h~~~a~~l~nLa~l~---~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~ 178 (441)
-.|+.+...+..+..+. -.-+.+++-+.++++++.-++.... .+.-+.+.+++ .. ...+
T Consensus 274 V~~~kV~~fL~~~~d~~~~l~q~~t~~~K~~llEkala~~edaI~----------~v~D~~~~d~~-~~--~~t~----- 335 (593)
T KOG2460|consen 274 VIDEKVRQFLLQGLDIEPALAQITTYDQKLSLLEKALARCEDAIQ----------NVRDEIKIDEK-QR--NSTL----- 335 (593)
T ss_pred cccHHHHHHHHHHHhhcHHhccCCCHhHHHHHHHHHHHHHHHHHH----------HHhhhcccchH-hh--hhhh-----
Confidence 46888999998888887 6789999999999999877665421 11111121111 00 0000
Q ss_pred cCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHh-hhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Q 013549 179 HKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKG-LQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLA 257 (441)
Q Consensus 179 ~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~-aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~ 257 (441)
. . ..+..+...+ ......-|++.|...+.. .+......+ +.-++.+=+.+|.-.+.+..
T Consensus 336 --~----~-q~i~aYL~Y~--~l~~tisR~~~~~~n~~~~~ls~~~~~~-----------~k~rpqdl~RLYd~iiknl~ 395 (593)
T KOG2460|consen 336 --N----G-QIILAYLKYN--KLLTTISRNEDAFTNLWNQWLSQQTSDP-----------KKLRPQDLERLYDSIIKNLS 395 (593)
T ss_pred --c----c-hHHHHHHHHH--HHHHHHhHHHHHHhhhHHHHHHhCcccc-----------cccCHHHHHHHHHHHHHHHH
Confidence 0 0 0010110000 000123333333332222 222110010 11156666777777777665
Q ss_pred hhcccCCCCCccccccch--hHHH-----HHH-H-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549 258 EQKDFSDMNTLGSCNMAL--EEVA-----LAA-T-FALGQLEAHMGNFGDAEEILTRTLTKTEELFG 315 (441)
Q Consensus 258 ~~~~~~~~~~lg~~~~~~--~~~~-----~~a-l-~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG 315 (441)
+... ..|..++.. ..+. ..+ . ..+|..|..+++|.||..+|.||..-.+++.+
T Consensus 396 e~~e-----lPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~ 457 (593)
T KOG2460|consen 396 EIME-----LPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNS 457 (593)
T ss_pred HHHh-----CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554 333222210 0001 111 2 36899999999999999999999999888866
No 321
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.39 E-value=44 Score=30.59 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccCh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNF 242 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y 242 (441)
+.|..++.+|+|++|+.+|+.+....+..+...--++-+++.+|+.
T Consensus 49 ~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 49 FDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 3566677788888888888776654444443333334444555543
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.83 E-value=7 Score=28.94 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
.+..||..+..+|+|++|..+..++|++-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 46789999999999999999999999863
No 323
>PF12854 PPR_1: PPR repeat
Probab=73.65 E-value=5.6 Score=26.29 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013549 280 LAATFALGQLEAHMGNFGDAEEILTR 305 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~~r 305 (441)
+.+++.|=..|+..|+.++|.+++.+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45688899999999999999999875
No 324
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=73.48 E-value=20 Score=41.64 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=66.1
Q ss_pred HHHHcCCHHHHHHHHHhhhhcc---CCchHHHHHHHHHH----HHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 201 VELAHGNLESAESFFKGLQEEE---GCTGSAALSYGEYL----HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 201 ~~~~qG~y~eAe~l~~~aL~~~---~~~~~~a~~~a~~~----~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
+.+....||+|...|+|.-... ..-..+....|-.+ ..+|+- +.|.+||..++.-.+ +.|+
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~--- 551 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHG-----GVGA--- 551 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcC-----CCCC---
Confidence 4456677888888888887721 11223333333222 233443 678888888754333 3331
Q ss_pred chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH
Q 013549 274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT 326 (441)
Q Consensus 274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~ 326 (441)
|= -+..=|.+|+.+|+|+|=.+.|.-||.-| ++||.+...-.
T Consensus 552 -~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 593 (932)
T PRK13184 552 -PL-----EYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRD 593 (932)
T ss_pred -ch-----HHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHH
Confidence 11 14566789999999999999999999877 68998766443
No 325
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=73.11 E-value=6.7 Score=39.71 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=48.2
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
+.+.|.-...+|+.++|..+|+.||++. |++ ...+...|+....-.+.-+|..+|.|||.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlala------------------P~~--p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALA------------------PTN--PQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcC------------------CCC--HHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 3445555678999999999999999881 111 23577888888888899999999999998
Q ss_pred H
Q 013549 309 K 309 (441)
Q Consensus 309 i 309 (441)
|
T Consensus 179 i 179 (472)
T KOG3824|consen 179 I 179 (472)
T ss_pred e
Confidence 7
No 326
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=72.64 E-value=1.3e+02 Score=31.69 Aligned_cols=121 Identities=18% Similarity=0.075 Sum_probs=70.7
Q ss_pred HHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHH
Q 013549 119 YESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVK 198 (441)
Q Consensus 119 ~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~ 198 (441)
---|+=..|..+-+++.++..+--..-+..++.-+. +--|+|+.|..-|+-.+ ++...|...|.
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaa--l~eG~~~~Ar~kfeAMl--------------~dPEtRllGLR 158 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAA--LLEGDYEDARKKFEAML--------------DDPETRLLGLR 158 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHH--HhcCchHHHHHHHHHHh--------------cChHHHHHhHH
Confidence 345677777777777653332211111112222221 12377777766555442 22334444455
Q ss_pred HHHH--HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 199 GLVE--LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 199 gl~~--~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
|++. ..+|.++-|..+-+++-..-++.+.+....-+-.+..|+++.|+.+.....+.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5543 25888888888888887766666666665555667789999998888777654
No 327
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=72.64 E-value=40 Score=26.69 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=30.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCCchHHHHHH
Q 013549 287 GQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLT 326 (441)
Q Consensus 287 g~ly~~qG~y~eAe~l~~rAL~i~e~~l-G~~HP~va~~l~ 326 (441)
|.-.-..|+|++|..+|.++++.+...+ ++..|..-..+.
T Consensus 13 Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir 53 (75)
T cd02677 13 ALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVK 53 (75)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3333445999999999999999999975 776776655544
No 328
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.42 E-value=22 Score=27.25 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC-CchHHHHHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH-HPKVGVVLTCLALMFR 333 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~-HP~va~~l~nLa~ly~ 333 (441)
+.+-|.-.-..|+|++|.++|++|++.....+..+ .|..-..+..-..-|.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl 59 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYL 59 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 34566666778999999999999999999986644 5555555555555443
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.22 E-value=40 Score=35.84 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=55.5
Q ss_pred HHcCCHHHHHHHHH--hhhhccCCchHHHHHHHHHHHHccChHHHHHH-------HHHHH---------HHHHhhcccCC
Q 013549 203 LAHGNLESAESFFK--GLQEEEGCTGSAALSYGEYLHATRNFLLAKKF-------YQKVI---------EVLAEQKDFSD 264 (441)
Q Consensus 203 ~~qG~y~eAe~l~~--~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~l-------y~rAL---------~i~~~~~~~~~ 264 (441)
...|+|+++..+.+ +.+..- ...-....+..+.++|.++.|..+ |+=|| ++. +.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a---~~--- 343 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIA---KE--- 343 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHC---CC---
T ss_pred HHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHH---Hh---
Confidence 36899999766664 122111 122345566677888888887765 22222 221 10
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhch
Q 013549 265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338 (441)
Q Consensus 265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ 338 (441)
+ ..+ .-...||.+...+|+++-||+.|+++-+ +..|..+|...|+-
T Consensus 344 ---~----~~~-----~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 344 ---L----DDP-----EKWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDR 389 (443)
T ss_dssp ---C----STH-----HHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-H
T ss_pred ---c----CcH-----HHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCH
Confidence 0 001 1356899999999999999999998743 34566777777764
No 330
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.12 E-value=68 Score=33.34 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHH--HHHHHHcCChHHHHHHHHHHHHh
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAM--STLLYESGNYVEAIEKLQKVENF 137 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nL--a~l~~~qG~y~eA~e~~~ral~i 137 (441)
..++|..|..+++..... .-+... ...+..| |.-+|++.+|.+|.+.+++.+..
T Consensus 143 n~~~y~aA~~~l~~l~~r---l~~~~~---~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR---LPGREE---YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHh---CCchhh---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 467899999999998864 222222 3445554 55679999999999999987543
No 331
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=72.01 E-value=1.1e+02 Score=30.80 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhh------------CCCCchHHHHHHHHHHHHHHhhchh
Q 013549 282 ATFALGQLEAHM----------GNFGDAEEILTRTLTKTEELF------------GSHHPKVGVVLTCLALMFRNKAMQE 339 (441)
Q Consensus 282 al~nLg~ly~~q----------G~y~eAe~l~~rAL~i~e~~l------------G~~HP~va~~l~nLa~ly~~qG~~e 339 (441)
.+.|+|.+|..+ ....+|-.+|++|-.+++-+. .+=.|.+..+|.++.....+.--++
T Consensus 113 vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ 192 (345)
T cd09034 113 ILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQAQECFLL 192 (345)
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555443 347788888888888887654 2344557777877776665554444
Q ss_pred hhhhh------------HHHHHHHHHHHHHhhc
Q 013549 340 HSSAL------------LIQEGLYRRALEFLKA 360 (441)
Q Consensus 340 eA~~~------------~~Ae~ly~rAL~i~~~ 360 (441)
+|..- .++-.+|+.|++.+..
T Consensus 193 ka~~~~~~~~~liakLa~~~~~~y~~A~~~l~~ 225 (345)
T cd09034 193 KAEEDKKAKLSLLARLACEAAKYYEEALKCLSG 225 (345)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44211 2567889999998864
No 332
>PF12854 PPR_1: PPR repeat
Probab=70.75 E-value=7.6 Score=25.62 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
..+++.|-..|.+.|+.++|++++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46799999999999999999999875
No 333
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.74 E-value=8.9 Score=28.36 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
++..||.-++..|+|.+|....++.|.+.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 67889999999999999999999998887653
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.29 E-value=28 Score=39.55 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 208 LESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 208 y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
|+-|..+-+.--.........+..||.-+..+|+|++|...|-++|..
T Consensus 350 y~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 350 YKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 444444433222222233455667888888888888888888887754
No 335
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.76 E-value=87 Score=32.52 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=38.5
Q ss_pred HHHcCCHHHHHHHHHhhhhc-cCCc-hHHHHHH--HHHHHHccChHHHHHHHHHHHHH
Q 013549 202 ELAHGNLESAESFFKGLQEE-EGCT-GSAALSY--GEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 202 ~~~qG~y~eAe~l~~~aL~~-~~~~-~~~a~~~--a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
.+.+++|..|..+|...... .... -.....+ |--++.+.+|.+|...+++.+..
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35899999999999998873 2111 1222233 44567899999999999998765
No 336
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=69.45 E-value=15 Score=28.22 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
-|..+.+.|.-....|+|.+|+++|.+++.....
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3556677777788899999999999998766544
No 337
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=69.28 E-value=19 Score=34.70 Aligned_cols=62 Identities=26% Similarity=0.308 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549 245 AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 324 (441)
Q Consensus 245 A~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~ 324 (441)
|+.+|.+|+.+. |..| ..+|-||.++..+|++=+|.=+|.|+|.. .+|. ..+
T Consensus 1 A~~~Y~~A~~l~---------P~~G-----------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A 52 (278)
T PF10373_consen 1 AERYYRKAIRLL---------PSNG-----------NPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSA 52 (278)
T ss_dssp HHHHHHHHHHH----------TTBS-----------HHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHH
T ss_pred CHHHHHHHHHhC---------CCCC-----------CcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHH
Confidence 789999999993 1234 24689999999999999999999999854 5676 778
Q ss_pred HHHHHHHHHH
Q 013549 325 LTCLALMFRN 334 (441)
Q Consensus 325 l~nLa~ly~~ 334 (441)
..||..++..
T Consensus 53 ~~NL~~lf~~ 62 (278)
T PF10373_consen 53 RENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8889999987
No 338
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.25 E-value=89 Score=33.27 Aligned_cols=114 Identities=20% Similarity=0.176 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh---hhhhh--hhHHHHHH--HHHHHHhcCC---cchhHHHHHHHHHHH
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFK---NSILG--VRVAAMEA--LAGLYLQLGQ---DDTSSVVADKCLQLC 176 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~---~~~lg--~~~~al~~--La~l~~~~G~---~~~A~~l~~~~L~i~ 176 (441)
.+..++--|.....+-.|++|++.+-.|=+.+ .+-+= ++-.++-+ +..+|..+-+ .+.|+.-..+|-.-+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 45566777778888888999998887763222 11111 11122222 2444555444 455655555555444
Q ss_pred HhcCCCcc----------hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 013549 177 EKHKPENY----------KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE 220 (441)
Q Consensus 177 ~~~~~~~~----------~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~ 220 (441)
++..++.. ....++..|...+-|.+.+.||+-++|-..++.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44332211 112567778788889999999999999999998876
No 339
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.69 E-value=64 Score=33.97 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 64 ~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
+++-+..+|. -.|+|..|+.+++..=--.....-.--+..-+++..+|..|.-++||.+|+..|...+.
T Consensus 124 SligLlRvh~----LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHC----LLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHH----hccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555553 47999999999875432222223334455678899999999999999999999998754
No 340
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=68.56 E-value=1.4e+02 Score=33.50 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=16.6
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 013549 114 MSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 114 La~l~~~qG~y~eA~e~~~r 133 (441)
+|.++.-+|+|.||-.+|.+
T Consensus 638 lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHH
Confidence 56677789999999999876
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.32 E-value=93 Score=35.59 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=32.4
Q ss_pred CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
.+...++.++..-|..++.+|+|++|..-|-+++...+
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 34557899999999999999999999999999865444
No 342
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.50 E-value=1.3e+02 Score=29.33 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=90.3
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYES----GNYVEAIEKLQKVENFKNSILGVRVAAMEALA 153 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~q----G~y~eA~e~~~ral~i~~~~lg~~~~al~~La 153 (441)
..+.|..|..+++++-... .+.....++..|... .++.+|...|+.+.... . ..+..+|+
T Consensus 53 ~~~~~~~a~~~~~~a~~~~----------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-----~-~~a~~~lg 116 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG----------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-----L-AEALFNLG 116 (292)
T ss_pred ccccHHHHHHHHHHhhhcC----------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-----c-HHHHHhHH
Confidence 4567999999999888611 126677788777653 35888999998653221 1 12556677
Q ss_pred HHHHh----cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcC--------CHHHHHHHHHhhhhc
Q 013549 154 GLYLQ----LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG--------NLESAESFFKGLQEE 221 (441)
Q Consensus 154 ~l~~~----~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG--------~y~eAe~l~~~aL~~ 221 (441)
.+|.. ..++.+|..++.++. +...+ .. ..+...++..|. .| +...|..+|.++-..
T Consensus 117 ~~~~~G~gv~~d~~~A~~~~~~Aa---~~g~~------~a--~~~~~~l~~~~~-~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 117 LMYANGRGVPLDLVKALKYYEKAA---KLGNV------EA--ALAMYRLGLAYL-SGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHHhcCCCcccCHHHHHHHHHHHH---HcCCh------hH--HHHHHHHHHHHH-cChhhhcccHHHHhHHHHHHHHHHh
Confidence 77654 125667777777663 11111 00 111123344442 33 234788888888773
Q ss_pred cCCchHHHHHHHHHHHH-cc---ChHHHHHHHHHHHHH
Q 013549 222 EGCTGSAALSYGEYLHA-TR---NFLLAKKFYQKVIEV 255 (441)
Q Consensus 222 ~~~~~~~a~~~a~~~~~-qG---~y~eA~~ly~rAL~i 255 (441)
. +..+...+|.+|.. .| ++.+|..+|.+|-+.
T Consensus 185 ~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 185 G--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred c--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 3 44566677766644 23 899999999999875
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.05 E-value=9.6 Score=27.11 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 112 LAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 112 ~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
.+||..|.++|+++.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5799999999999999999998863
No 344
>PF13041 PPR_2: PPR repeat family
Probab=66.59 E-value=20 Score=25.32 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAG 154 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~ 154 (441)
.+++.|=..|.+.|++++|.++|++..+-. +.++..+++.+..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g---~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRG---IKPDSYTYNILIN 46 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---CCCCHHHHHHHHH
Confidence 468888899999999999999999875322 3334445555443
No 345
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=66.18 E-value=1.3e+02 Score=36.28 Aligned_cols=85 Identities=9% Similarity=0.069 Sum_probs=59.0
Q ss_pred ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC--------------------CHHHHH
Q 013549 241 NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG--------------------NFGDAE 300 (441)
Q Consensus 241 ~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG--------------------~y~eAe 300 (441)
.+++|..+|.|+.... . .+.|.-+..-+..-++.++..+. .-.++-
T Consensus 360 ~~~~~l~~Y~~~~~~~---~-----------~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~ 425 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDT---S-----------EYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIA 425 (1185)
T ss_pred HHHHHHHHHHHhhccc---c-----------ccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHH
Confidence 3556666666665441 1 11244445556777788888777 788999
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 301 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 301 ~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
++..+++.+.-..+ ...+=...+..||.+|...|=..+.
T Consensus 426 ~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 426 EFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred HHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHH
Confidence 99999998876544 3455668899999999999976663
No 346
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.00 E-value=16 Score=29.07 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
.|..+...|.-+..+|+|.+|+-+|+.+++....
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999998665543
No 347
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=64.75 E-value=20 Score=24.30 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~ 304 (441)
+..+|-.+..+|+|++|+.+|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 5688999999999999999955
No 348
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.69 E-value=6.7 Score=40.13 Aligned_cols=122 Identities=19% Similarity=0.137 Sum_probs=82.6
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
+..|.++.|+.+|.+++...+........-+.++...++...|+.-|-.|++| .-. . + ..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei---n~D-----s-a-----------~~ 184 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI---NPD-----S-A-----------KG 184 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc---Ccc-----c-c-----------cc
Confidence 47999999999999999854433333334467888889999999999999998 211 1 1 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
+---|.....+|+|.+|-..+..|.++- -.+.+..++- .+.-+-++.++- ...|+|+.+-++
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld------~dE~~~a~lK---eV~p~a~ki~e~------~~k~er~~~e~~ 246 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLD------YDEANSATLK---EVFPNAGKIEEH------RRKYERAREERE 246 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhcc------ccHHHHHHHH---Hhccchhhhhhc------hhHHHHHHHHhc
Confidence 2234556677899999999999988752 2244445444 555555554443 667777777664
No 349
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=64.56 E-value=8.4 Score=40.10 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCch----HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPK----VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~----va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
..|..+.++||.-.++.--.+-|. ||.++..||++|....+ +++..|++|-+|++
T Consensus 328 ~~a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~--------eQe~~Y~eAE~iL~ 386 (404)
T PF12753_consen 328 KIAQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESK--------EQEKAYKEAEKILK 386 (404)
T ss_dssp TTHHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchH--------HHHHHHHHHHHHHH
Confidence 357889999999999998899997 67788999999855432 46889999999985
No 350
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=64.29 E-value=56 Score=25.34 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC-CchHHHHHHHHHHHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH-HPKVGVVLTCLALMF 332 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~-HP~va~~l~nLa~ly 332 (441)
..-|.-.-..|+|++|..+|.+|++.+...+-.+ .|.....+..-..-|
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~y 59 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEY 59 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3445556667999999999999999999987433 345555555444444
No 351
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=64.24 E-value=57 Score=25.33 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC-CchHHHHHHHHHHHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH-HPKVGVVLTCLALMF 332 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~-HP~va~~l~nLa~ly 332 (441)
..-|.-+-..|+|++|..+|.+|++.+.+.+-.+ .|.....+..-+.-|
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~ey 61 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEY 61 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 3445555567999999999999999999986544 344445555444444
No 352
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=63.45 E-value=1e+02 Score=35.34 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQL 175 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i 175 (441)
++-......|.-..+.|.|++|+.+|+.+ |+|+.|..+..++|.-
T Consensus 620 ~~~~i~~~vA~~a~~~G~~~~sI~LY~la-------------------------g~yd~al~link~LS~ 664 (835)
T KOG2168|consen 620 DLQKIILEVASEADEDGLFEDAILLYHLA-------------------------GDYDKALELINKLLSQ 664 (835)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHh-------------------------hhhhHHHHHHHHHHHH
Confidence 45566677788889999999999999975 6777777777777643
No 353
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=63.09 E-value=24 Score=28.12 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC--CCCch
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG--SHHPK 320 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG--~~HP~ 320 (441)
.+...|.-+-.+|+|.+|..+|++|++...+++- |++|.
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 4567777888999999999999999999999843 45544
No 354
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.84 E-value=20 Score=24.22 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=16.5
Q ss_pred HHHHHHHHHHccChHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQ 250 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~ 250 (441)
...+|-.++.+|+|++|+.+|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3456778888999999999955
No 355
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=62.67 E-value=1.9e+02 Score=30.38 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=63.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhcc---CCchHH--HHHH-HHHHHHcc-------ChHHHHHHHHHHHHHHHhhcccCC
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEE---GCTGSA--ALSY-GEYLHATR-------NFLLAKKFYQKVIEVLAEQKDFSD 264 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~---~~~~~~--a~~~-a~~~~~qG-------~y~eA~~ly~rAL~i~~~~~~~~~ 264 (441)
++-.....|+|+-|...|+-+.++. +..-.. +.-+ +-.+..+| +-++..++++.|+..+.....
T Consensus 214 LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~--- 290 (414)
T PF12739_consen 214 LADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL--- 290 (414)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc---
Confidence 4556678999999999999998832 111111 1111 11222333 335888999999988744111
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
..++.. ...+.++.-.+.++...|.|.+|-..+-+...-
T Consensus 291 ----~~~~~~--~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 291 ----PRCSLP--YYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ----cccccc--cchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 001110 013456677888999999999988877777654
No 356
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=61.28 E-value=13 Score=22.89 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
+++.|=..|...|++++|.+.|++.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHH
Confidence 5778888899999999999998875
No 357
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.92 E-value=19 Score=28.71 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~ 138 (441)
.|..+...|.-+...|+|.+|+.+|+.+++..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 35556667777888999999999999886655
No 358
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=59.13 E-value=1.4e+02 Score=32.12 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549 285 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF 332 (441)
Q Consensus 285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly 332 (441)
-.+..+...|+|+|+..++.+- .++.+..+|-=-..+++.+..+|
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i---~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRI---IERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHH---HHHHhhhhhcccHHHHHHHHHHH
Confidence 3577888999999999999874 45556655554445555433333
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.01 E-value=76 Score=25.89 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=33.3
Q ss_pred HHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 86 MLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 86 l~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
+.-+++.++ .+|.=......+|..+...|+|++|++.+...+...+
T Consensus 8 ~~al~~~~a--------~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALA--------ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHH--------HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHH--------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 444556664 3555568899999999999999999999988765543
No 360
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.77 E-value=1.5e+02 Score=30.43 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh-------HHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR-------VAAMEALAGLYLQLGQDDTSSVVADKCLQLC 176 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~-------~~al~~La~l~~~~G~~~~A~~l~~~~L~i~ 176 (441)
...++.+...||.+|...++|..|-..+... +..-|.. ....-.++.+|...++..+|+.+..++ .|.
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I----~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa-Sil 173 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLVGI----PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA-SIL 173 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc----CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHh
Confidence 4468999999999999999999998766532 1111221 223445677888888888888887776 222
Q ss_pred HhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 013549 177 EKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQ 219 (441)
Q Consensus 177 ~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL 219 (441)
..... -+.+..-.+.+.+.+....|+|=||-..|-+..
T Consensus 174 ~a~~~-----Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 174 QAESS-----NEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred hhccc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 023333334444555556777766655554443
No 361
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.66 E-value=1e+02 Score=31.72 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=89.7
Q ss_pred CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
|-+-++.-..|+..=...- ...+.|++..-...++ +|...-..+ +.| ..|..+--=|+-|+.--+|..|++.|...
T Consensus 32 ~~~~Dew~kEm~k~PfFMt-~~p~~gd~~~~~~~Lq-slK~da~E~-ep~-E~Aen~KeeGN~~fK~Kryk~A~~~Yt~G 107 (390)
T KOG0551|consen 32 GFHEDEWEKEMNKVPFFMT-RAPSEGDPNPDNVCLQ-SLKADAEEG-EPH-EQAENYKEEGNEYFKEKRYKDAVESYTEG 107 (390)
T ss_pred CCCHHHHHHHHhcCcHHHh-cCCCCCCCCccHHHHH-HhhhccccC-ChH-HHHHHHHHHhHHHHHhhhHHHHHHHHHHH
Confidence 4445667777777555543 3346777755444443 443332222 334 38888888999999999999999999886
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
|+....-..+....++|.+. +.+..|+|-+|+.=
T Consensus 108 lk~kc~D~dlnavLY~NRAA----------------------------------------------a~~~l~NyRs~l~D 141 (390)
T KOG0551|consen 108 LKKKCADPDLNAVLYTNRAA----------------------------------------------AQLYLGNYRSALND 141 (390)
T ss_pred HhhcCCCccHHHHHHhhHHH----------------------------------------------HHHHHHHHHHHHHH
Confidence 55432211111112222222 23345666666666
Q ss_pred HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Q 013549 215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLA 257 (441)
Q Consensus 215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~ 257 (441)
..+++...++|.-+...=|.++....+|++|..+.+..+.|..
T Consensus 142 cs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 142 CSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 6666665555544444445555666777777777777777643
No 362
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.84 E-value=57 Score=31.67 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=57.5
Q ss_pred HcCCHHHHHHHHHhhhhcc-------C-CchHH----HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549 204 AHGNLESAESFFKGLQEEE-------G-CTGSA----ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 271 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~-------~-~~~~~----a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~ 271 (441)
..|+|+.|..+.+-++... . ..+.. ....+......|+--+. .+.+....+. .. .
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~---~~---------~ 161 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT---TE---------W 161 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH---hc---------C
Confidence 6999999999999999921 1 11111 22344455566653222 1233344442 11 0
Q ss_pred ccchhHHHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHHHHHHh
Q 013549 272 NMALEEVALAATFALGQLE---------AHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 272 ~~~~~~~~~~al~nLg~ly---------~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
.| |+.+..--+--+|.++ .+.++..+|..+++||+.+..++
T Consensus 162 dm-pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 162 DM-PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CC-ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 11 4555533444677766 46789999999999999986554
No 363
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=57.75 E-value=20 Score=22.24 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
+++.|=..|.+.|++++|+++|.+..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46777888999999999999998763
No 364
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=56.67 E-value=26 Score=27.92 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
|..+..-|.-....|+|.+|+.+|+.+++....
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 455566666777889999999999988766543
No 365
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.60 E-value=29 Score=27.91 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 294 GNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 294 G~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
|+.++|..+|++++.+-++.+.-.
T Consensus 22 g~~e~Al~~Y~~gi~~l~eg~ai~ 45 (79)
T cd02679 22 GDKEQALAHYRKGLRELEEGIAVP 45 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCC
Confidence 444455555555555555444433
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=55.28 E-value=68 Score=34.15 Aligned_cols=100 Identities=19% Similarity=0.227 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~ 159 (441)
++|++++.+.+..-- ..+ =| -.-.+.++..+.++|.++.|+..-+.- .... .+-.+.
T Consensus 275 ~d~~~v~~~i~~~~l-l~~-----i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rF---eLAl~l 331 (443)
T PF04053_consen 275 GDFEEVLRMIAASNL-LPN-----IP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRF---ELALQL 331 (443)
T ss_dssp T-HHH-----HHHHT-GGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHH---HHHHHC
T ss_pred CChhhhhhhhhhhhh-ccc-----CC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHh---HHHHhc
Confidence 578888777752110 111 11 112788999999999999998664431 1112 233466
Q ss_pred CCcchhHHHHHHHHHHHHhcC-CCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 013549 160 GQDDTSSVVADKCLQLCEKHK-PENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE 220 (441)
Q Consensus 160 G~~~~A~~l~~~~L~i~~~~~-~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~ 220 (441)
|+.+.|.. ++.... +..| --+|-..+.+|+++-|+.+|+++-+
T Consensus 332 g~L~~A~~-------~a~~~~~~~~W-----------~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 332 GNLDIALE-------IAKELDDPEKW-----------KQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp T-HHHHHH-------HCCCCSTHHHH-----------HHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred CCHHHHHH-------HHHhcCcHHHH-----------HHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 87655443 332222 1112 1246666799999999999999866
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.36 E-value=74 Score=32.21 Aligned_cols=72 Identities=15% Similarity=0.059 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~ 182 (441)
...+++..+..|...|.+.+|+.+.++++.+.+-. . ..+..|..++..+|+...+...|++.-+.+++..+.
T Consensus 278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL~--e--~~nk~lm~~la~~gD~is~~khyerya~vleaelgi 349 (361)
T COG3947 278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLS--E--QDNKGLMASLATLGDEISAIKHYERYAEVLEAELGI 349 (361)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhh--h--HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCC
Confidence 34556667778999999999999999998876532 1 234557788888999888888888877666665543
No 368
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.93 E-value=22 Score=28.58 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR 145 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~ 145 (441)
|...-+.|.-+.+.|+.++|+.+|++++......+.+.
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~ 45 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVP 45 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 33334444445577999999999999988777665544
No 369
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=52.46 E-value=1.8e+02 Score=26.47 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCc
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCT 225 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~ 225 (441)
+.|.++...|+|++|..+|++..+...+.
T Consensus 49 ~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 49 FDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred hHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 45777888999999999998888855443
No 370
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=52.05 E-value=19 Score=22.02 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
++.|=+.|...|++++|+.+|++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 5677788999999999999998754
No 371
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=51.25 E-value=43 Score=26.07 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
.+..-|.-+...|+|++|+.+|..++.....
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3344444555689999999999988666544
No 372
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=50.28 E-value=52 Score=38.39 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHH--HHHHHHhhchhhh
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCL--ALMFRNKAMQEHS 341 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nL--a~ly~~qG~~eeA 341 (441)
++.-+|.+...|-+-..-.+.|.+||..+++.-| .++.-|.-| |.+|+++|+|+|=
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 571 (932)
T PRK13184 514 AQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG----GVGAPLEYLGKALVYQRLGEYNEE 571 (932)
T ss_pred HHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC----CCCCchHHHhHHHHHHHhhhHHHH
Confidence 5666666665555444445899999999998744 455555555 4699999999873
No 373
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=49.65 E-value=3e+02 Score=28.81 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=36.1
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHH--HHHHHHcCCHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFAL--GQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nL--g~ly~~qG~y~eAe~l~~ 304 (441)
+.-+.++++|..|..+|+..+.. ... +. . ......+.+| |-.+++.-+|++|.+.++
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r---~l~----~~-~-------~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRR---LLS----AV-N-------HTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc---ccC----hh-h-------hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 44567888999999998888754 110 00 0 0122334444 556778888889988888
No 374
>PF13041 PPR_2: PPR repeat family
Probab=49.56 E-value=30 Score=24.35 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 281 AATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 281 ~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
.+++.|=..|...|++++|.++|++-.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457788889999999999999998876
No 375
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.69 E-value=4.1e+02 Score=29.05 Aligned_cols=221 Identities=18% Similarity=0.091 Sum_probs=126.2
Q ss_pred CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (441)
Q Consensus 103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~ 182 (441)
.+|.=+.-+.+-+..+.-.|+-+.|+++++..+++.-.. +..--+..++.++.-+++|..|...++...++.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ--~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des------ 333 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQ--VKSLMVFERAWLSVGQHQYSRAADSFDLLRDES------ 333 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh------
Confidence 355667778888999999999888888888876633221 122234556677777788888877776664432
Q ss_pred cchhhhhhHhHHHHHHHHHH--------HHcCCHHHHHHHHHhhhh---c-cCCchH------------------H----
Q 013549 183 NYKTYGAVNSRANAVKGLVE--------LAHGNLESAESFFKGLQE---E-EGCTGS------------------A---- 228 (441)
Q Consensus 183 ~~~~~~~l~~~a~al~gl~~--------~~qG~y~eAe~l~~~aL~---~-~~~~~~------------------~---- 228 (441)
.|+. ....+ +.|-.+ ...|+-+.|..+++..-. . .+..+. .
T Consensus 334 dWS~--a~Y~Y---fa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~l 408 (546)
T KOG3783|consen 334 DWSH--AFYTY---FAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILL 408 (546)
T ss_pred hhhH--HHHHH---HHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccc
Confidence 1221 11111 111111 123355555444443322 0 000000 0
Q ss_pred H---HHHHHHHH--HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 229 A---LSYGEYLH--ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 303 (441)
Q Consensus 229 a---~~~a~~~~--~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~ 303 (441)
+ .-++-++. ......+.+ +...-++ ... . + +++. ..--..-+|.+++++|+-..|+.+|
T Consensus 409 a~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~-~~~------~---~-d~Dd-~~lk~lL~g~~lR~Lg~~~~a~~~f 472 (546)
T KOG3783|consen 409 ASPYYELAYFWNGFSRMSKNELE----KMRAELE-NPK------I---D-DSDD-EGLKYLLKGVILRNLGDSEVAPKCF 472 (546)
T ss_pred cchHHHHHHHHhhcccCChhhHH----HHHHHHh-ccC------C---C-CchH-HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 00010111 122223333 2222211 111 0 0 1121 1112346799999999999999999
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 304 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 304 ~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
..+++- +...-.+|--+-.++.-||.+|..+|. ++.++..+..||-+..
T Consensus 473 ~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g-----~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 473 KIQVEK-ESKRTEDLWAVPFALYELALLYWDLGG-----GLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHH-HHhhccccccccHHHHHHHHHHHhccc-----ChHHHHHHHHHHHhhc
Confidence 999988 777888888899999999999999997 2445588888886665
No 376
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.29 E-value=48 Score=25.98 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
+..-|.-....|+|++|+.+|.++++....
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344444555788888888888888665543
No 377
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=46.08 E-value=42 Score=28.53 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcch
Q 013549 321 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV 368 (441)
Q Consensus 321 va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~ 368 (441)
++..+...|..|...|+.+.| --+|-|.+.+. ...+.||+.
T Consensus 37 sa~~l~~~A~~~~~egd~E~A------Yvl~~R~~~L~-~ki~~Hpdy 77 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQA------YVLYMRYLTLV-EKIPKHPDY 77 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHH------HHHHHHHHHHH-CCHCCSCCC
T ss_pred HHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHH-HHhhcCccc
Confidence 678888899999999999987 78999999999 556788873
No 378
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=46.02 E-value=4.2e+02 Score=28.63 Aligned_cols=132 Identities=17% Similarity=0.107 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhhh---hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSI---LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~---lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
+..=|.++..||++.+|++.|.|.-+-..++ +...+ ..+.+.+.|.. .+. ++...++..+++..+..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEv-l~grilnAffl-~nl----d~Me~~l~~l~~~~~~s---- 78 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEV-LGGRILNAFFL-NNL----DLMEKQLMELRQQFGKS---- 78 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHH-HhhHHHHHHHH-hhH----HHHHHHHHHHHHhcCCc----
Confidence 4556889999999999999999875433332 11000 11122233321 222 23344445555554311
Q ss_pred hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc----cCCchHH-----------HHHHHHHHHHccChHHHHHHHHHH
Q 013549 188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEE----EGCTGSA-----------ALSYGEYLHATRNFLLAKKFYQKV 252 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~----~~~~~~~-----------a~~~a~~~~~qG~y~eA~~ly~rA 252 (441)
...-...+++...+|.|+.|...+-..-.. .+..-++ ..-.|..+...|+|.|+..+..|-
T Consensus 79 ----~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 79 ----AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred ----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 111124678888999999998877655441 1111110 111255677899999999999998
Q ss_pred HHHH
Q 013549 253 IEVL 256 (441)
Q Consensus 253 L~i~ 256 (441)
++.+
T Consensus 155 ~~~l 158 (549)
T PF07079_consen 155 IERL 158 (549)
T ss_pred HHHH
Confidence 8775
No 379
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.69 E-value=49 Score=20.64 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
.+++.+-..+.+.|+++.|..++....
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 368888899999999999999888753
No 380
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=44.82 E-value=2.2e+02 Score=28.54 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~ 181 (441)
...++..++..+...|+++.+++++++-+...+-. -..+..+...|++.|+...|...|++.-++.....+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~----E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYD----EPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 67789999999999999999999999976655421 236777888999999999999999888665444433
No 381
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=44.71 E-value=2.1e+02 Score=31.76 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=26.0
Q ss_pred CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
.++...-......|.-...+|++.+|+.+|+-+
T Consensus 408 ~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 408 DDEDFLREIIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp SSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345567777888888999999999999999864
No 382
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=44.21 E-value=1.2e+02 Score=33.40 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 282 ATFALGQLEAH--MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 282 al~nLg~ly~~--qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
++.|||.|-.- ...-..++++|.+|+...+..++..|-. -+..+|.-|.++++|.+|
T Consensus 279 ALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvY---PYty~gg~~yR~~~~~eA 337 (618)
T PF05053_consen 279 ALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVY---PYTYLGGYYYRHKRYREA 337 (618)
T ss_dssp HHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SH---HHHHHHHHHHHTT-HHHH
T ss_pred hhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccc---cceehhhHHHHHHHHHHH
Confidence 56777776443 2334678999999999999999988843 466677889999999887
No 383
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=44.11 E-value=57 Score=25.31 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
.+..-|.-....|+|++|+.+|..++.....
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444555566779999999999988665543
No 384
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.02 E-value=73 Score=35.23 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhh
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAV 190 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l 190 (441)
.+.++..+.+||-+++|+++.... +.--.+-.++|+++.|..++.++ ..+..|.
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~D~---------------d~rFelal~lgrl~iA~~la~e~------~s~~Kw~----- 670 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELSTDP---------------DQRFELALKLGRLDIAFDLAVEA------NSEVKWR----- 670 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCCCh---------------hhhhhhhhhcCcHHHHHHHHHhh------cchHHHH-----
Confidence 667888899999888887553221 11122334668887776655433 1111121
Q ss_pred HhHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 013549 191 NSRANAVKGLVELAHGNLESAESFFKGLQE 220 (441)
Q Consensus 191 ~~~a~al~gl~~~~qG~y~eAe~l~~~aL~ 220 (441)
-+|-+.+..|++.-|.++|.++.+
T Consensus 671 ------~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 671 ------QLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred ------HHHHHHhhcccchhHHHHHHhhcc
Confidence 135566789999999999999977
No 385
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.63 E-value=75 Score=27.58 Aligned_cols=45 Identities=24% Similarity=0.250 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhhc--cCCchHHHHHHHHHHHHccChHHHHHHHHHHH
Q 013549 209 ESAESFFKGLQEE--EGCTGSAALSYGEYLHATRNFLLAKKFYQKVI 253 (441)
Q Consensus 209 ~eAe~l~~~aL~~--~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL 253 (441)
+++..+|+..... ...+..--..+|.++..+|+|.+|...|+++|
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4888888887772 33333344678999999999999999999876
No 386
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=41.65 E-value=2.8e+02 Score=25.40 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
+.+...|++....-.+ .++.+++..++.-.-.. .|.....-.--|.++..+|+|.+|+.+++..
T Consensus 7 ~~iv~gLie~~~~al~----~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALR----LGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHHHc----cCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4566777776555322 35788888888655443 3445556667788999999999999999885
No 387
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.42 E-value=4.4e+02 Score=27.59 Aligned_cols=108 Identities=14% Similarity=0.035 Sum_probs=60.8
Q ss_pred HHHcCCHHHHHHHHHhhhhccCCc-----hHHH--HHHHHHHHHccChHHHHHHHHHHHH---------------HHHhh
Q 013549 202 ELAHGNLESAESFFKGLQEEEGCT-----GSAA--LSYGEYLHATRNFLLAKKFYQKVIE---------------VLAEQ 259 (441)
Q Consensus 202 ~~~qG~y~eAe~l~~~aL~~~~~~-----~~~a--~~~a~~~~~qG~y~eA~~ly~rAL~---------------i~~~~ 259 (441)
.+.+++|..|..+|+..+...... -... ++-|-.++..-+|++|...+++.+. ...+.
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 219 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELEDVIKR 219 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHHHHHHh
Confidence 357999999999999998832111 1112 2334466789999999999983220 00000
Q ss_pred cccCCCCCccc--------c--ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 260 KDFSDMNTLGS--------C--NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 260 ~~~~~~~~lg~--------~--~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
.. ..++. . ...|.-..+..+..=|.--..+|+|+.|.-.+-|+|++..+.
T Consensus 220 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q~ 279 (380)
T TIGR02710 220 NA----SILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQI 279 (380)
T ss_pred HH----hhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 00 00000 0 000100011122222333348999999999999999988776
No 388
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.69 E-value=2.9e+02 Score=30.83 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
-.||.+....|++..|.+++++|-+
T Consensus 670 ~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 670 RQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHhhcccchhHHHHHHhhcc
Confidence 4677777888888888888887754
No 389
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=40.59 E-value=2e+02 Score=27.26 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHhhhhc-----cChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChH--------
Q 013549 59 NPVVLQMINYALSHARSQ-----KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYV-------- 125 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~-----~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~-------- 125 (441)
++-...|++-+..++++. +.--+..+|...+-+++++... +++.....++.++|.+|...|+.-
T Consensus 17 d~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~~---~~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~ 93 (199)
T cd07626 17 DDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDET---PTSVPLTQAIKHTGQAYEEIGELFAEQPKHDL 93 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC---ccchHHHHHHHHHHHHHHHHHHHHHHhhHhhH
Confidence 344555666666655432 1112457899999999988754 566676666766666666666532
Q ss_pred ----HHHHHHHHHHHhhhhhhhh
Q 013549 126 ----EAIEKLQKVENFKNSILGV 144 (441)
Q Consensus 126 ----eA~e~~~ral~i~~~~lg~ 144 (441)
|.+..|.+.+...+..++.
T Consensus 94 ~~l~E~L~eY~gll~~~pdi~~~ 116 (199)
T cd07626 94 IPLLDGLHEYKGLLSTFPDIIGV 116 (199)
T ss_pred HHHHHHHHHHHhHHHhhhHHHHH
Confidence 5555555555555554443
No 390
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.47 E-value=5.3e+02 Score=28.25 Aligned_cols=227 Identities=12% Similarity=0.065 Sum_probs=126.9
Q ss_pred CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
..+|+-|.=+.+.|..+... |+-+.|+.+.+.++++..+.. ...++..+|..+--+-+|.+|-..+..-.
T Consensus 261 ~~~p~ga~wll~~ar~l~~~----g~~eaa~~~~~~~v~~~~kQ~------~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 261 KRYPKGALWLLMEARILSIK----GNSEAAIDMESLSIPIRMKQV------KSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HhCCCCccHHHHHHHHHHHc----ccHHHHHHHHHhcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34666677777888777442 446788888888887554443 45678888888888889999988877765
Q ss_pred HhhhhhhhhhHHHHHHHHHHHH---------hcCCcchhHHHHHHHHHHHHhcC---CCcch---hhhhhHhHH-----H
Q 013549 136 NFKNSILGVRVAAMEALAGLYL---------QLGQDDTSSVVADKCLQLCEKHK---PENYK---TYGAVNSRA-----N 195 (441)
Q Consensus 136 ~i~~~~lg~~~~al~~La~l~~---------~~G~~~~A~~l~~~~L~i~~~~~---~~~~~---~~~~l~~~a-----~ 195 (441)
++..-+.+ .+--+++++. ..|+.+.+..+.+..-.+....+ |.... +++....+. .
T Consensus 331 desdWS~a----~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~ 406 (546)
T KOG3783|consen 331 DESDWSHA----FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASI 406 (546)
T ss_pred hhhhhhHH----HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccc
Confidence 44432211 1111222211 12355555555444433333322 21100 000000000 0
Q ss_pred H----HHHHHHHH----cCCHHHHHHHHHhhhhccCC--chHH---HHHHHHHHHHccChHHHHHHHHHHHHHHHhhccc
Q 013549 196 A----VKGLVELA----HGNLESAESFFKGLQEEEGC--TGSA---ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDF 262 (441)
Q Consensus 196 a----l~gl~~~~----qG~y~eAe~l~~~aL~~~~~--~~~~---a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~ 262 (441)
. ..-++|.. .+-.++.++ ++..+..+.. .... .+-.|.+++..|+-..|..+|+.+++-.. .+.
T Consensus 407 ~la~P~~El~Y~Wngf~~~s~~~l~k-~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~-~~~- 483 (546)
T KOG3783|consen 407 LLASPYYELAYFWNGFSRMSKNELEK-MRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKES-KRT- 483 (546)
T ss_pred cccchHHHHHHHHhhcccCChhhHHH-HHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhc-
Confidence 0 01234433 223344441 1122221111 1112 23348899999999999999999997621 121
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 013549 263 SDMNTLGSCNMALEEVALAATFALGQLEAHMGN-FGDAEEILTRTLTKT 310 (441)
Q Consensus 263 ~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~-y~eAe~l~~rAL~i~ 310 (441)
..+ .. .-.+++-||.+|.++|. .+++.+++.||-+-+
T Consensus 484 -~d~-w~---------~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 484 -EDL-WA---------VPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred -ccc-cc---------ccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 122 22 12468899999999999 999999999986644
No 391
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.65 E-value=69 Score=25.28 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=16.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 116 TLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 116 ~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
.-....|+|++|..+|..+++.+..
T Consensus 14 v~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 14 VKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3344677888888888777655533
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.64 E-value=4.2e+02 Score=26.61 Aligned_cols=126 Identities=16% Similarity=0.145 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH-HHHHH
Q 013549 208 LESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFAL 286 (441)
Q Consensus 208 y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~-al~nL 286 (441)
.+.-..+|++||+.++........|-.+......-++-....+++|.- . +.. +.+. .+.+.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~-----~~~----------~~LW~~yL~~ 108 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---N-----PGS----------PELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---C-----CCC----------hHHHHHHHHH
Confidence 456678889999876655555555655556666666767777777654 1 111 1222 12222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhCC---CCchHHH-------HHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 287 GQLEAHMGNFGDAEEILTRTLTKTEELFGS---HHPKVGV-------VLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 287 g~ly~~qG~y~eAe~l~~rAL~i~e~~lG~---~HP~va~-------~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
-+.-...-.|++-...|.++|......... .|+.+.. .+.++.......|-.|.| ..++|-.|+
T Consensus 109 ~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A------va~~Qa~lE 182 (321)
T PF08424_consen 109 RQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA------VALWQALLE 182 (321)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH------HHHHHHHHH
Confidence 222234457889999999999988887554 3555444 444444555555555544 555555555
Q ss_pred H
Q 013549 357 F 357 (441)
Q Consensus 357 i 357 (441)
+
T Consensus 183 ~ 183 (321)
T PF08424_consen 183 F 183 (321)
T ss_pred H
Confidence 5
No 393
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=38.60 E-value=1.4e+02 Score=32.87 Aligned_cols=70 Identities=9% Similarity=-0.009 Sum_probs=45.4
Q ss_pred CchHHHHHHHHHHHH--ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013549 224 CTGSAALSYGEYLHA--TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEE 301 (441)
Q Consensus 224 ~~~~~a~~~a~~~~~--qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~ 301 (441)
..+.+.-+||++-.. ...-..++++|++|+...+..-+ ++| +-.+.-+|.-|+..++|.||..
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~--n~H-------------vYPYty~gg~~yR~~~~~eA~~ 339 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN--NHH-------------VYPYTYLGGYYYRHKRYREALR 339 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT--T---------------SHHHHHHHHHHHHTT-HHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc--CCc-------------cccceehhhHHHHHHHHHHHHH
Confidence 346777788876442 34456789999999999543322 111 2246788888999999999998
Q ss_pred HHHHHHH
Q 013549 302 ILTRTLT 308 (441)
Q Consensus 302 l~~rAL~ 308 (441)
.+-.|=+
T Consensus 340 ~Wa~aa~ 346 (618)
T PF05053_consen 340 SWAEAAD 346 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877743
No 394
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.84 E-value=3.7e+02 Score=26.11 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=57.5
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHhhCC
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT-LTKTEELFGS 316 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA-L~i~e~~lG~ 316 (441)
.-|+|+.|.++-+.||+- ... -+..+. .+...+.+..+.+-+......|+- .+++|.+. ..+. -++
T Consensus 95 D~Gd~~~AL~ia~yAI~~---~l~--~Pd~f~---R~~~t~vaeev~~~A~~~~~ag~~--~e~~~~~~~~~l~---~~~ 161 (230)
T PHA02537 95 DIGDFDGALEIAEYALEH---GLT--MPDQFR---RTLANFVAEEVANAALKAASAGES--VEPYFLRVFLDLT---TEW 161 (230)
T ss_pred eccCHHHHHHHHHHHHHc---CCC--CCcccc---CCchHHHHHHHHHHHHHHHHcCCC--CChHHHHHHHHHH---hcC
Confidence 679999999999999986 222 111111 111112222356677777777863 23344333 2332 345
Q ss_pred CCchH--HHHHHHHHHHHH---------HhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 317 HHPKV--GVVLTCLALMFR---------NKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 317 ~HP~v--a~~l~nLa~ly~---------~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
+=|+. +..+--+|..+. ..++.+ .|..+++||+++-..
T Consensus 162 dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~------~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQ------LALALLQRAFQLNDK 210 (230)
T ss_pred CCChHHHHHHHHHHHHHHhhcccCCCccCcccHH------HHHHHHHHHHHhCCC
Confidence 66663 344555555552 233333 358889999888643
No 395
>PRK10941 hypothetical protein; Provisional
Probab=37.83 E-value=1.6e+02 Score=29.14 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKC 172 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~ 172 (441)
-+.+.++||=..|.+.++|..|+...++.+.+.+.... -+-..+-+|.++|.+..|..=++..
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~----e~RDRGll~~qL~c~~~A~~DL~~f 241 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY----EIRDRGLIYAQLDCEHVALSDLSYF 241 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 47889999999999999999999999999988876532 2334577899999988776544333
No 396
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.62 E-value=4.9e+02 Score=27.00 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=70.2
Q ss_pred HHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549 236 LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 315 (441)
Q Consensus 236 ~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG 315 (441)
....++.++|..+.++..+-..+.+. |+. ..-.....|.++-.+|+.+++++.+...-.+-....|
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e-------------~~a-v~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~ 150 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKE-------------PDA-VIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDG 150 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhcc-------------chh-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC
Confidence 44567899999999998876433322 111 1223457888899999999999999888877776655
Q ss_pred CCCchHHHHHHHHHHHH-HHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 316 SHHPKVGVVLTCLALMF-RNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 316 ~~HP~va~~l~nLa~ly-~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
--|.|-..++.++.-| +..|++ ...|+-||..+.
T Consensus 151 -v~~~Vh~~fY~lssqYyk~~~d~---------a~yYr~~L~YL~ 185 (380)
T KOG2908|consen 151 -VTSNVHSSFYSLSSQYYKKIGDF---------ASYYRHALLYLG 185 (380)
T ss_pred -CChhhhhhHHHHHHHHHHHHHhH---------HHHHHHHHHHhc
Confidence 3455777777777755 455665 456888887764
No 397
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=37.48 E-value=86 Score=32.87 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549 244 LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 322 (441)
Q Consensus 244 eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~-al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va 322 (441)
.|..+.++||.-..+.....++.+ .+.++ ++.+||++|- .+=.+-+.+|++|=.|-.+.-...|-..-
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddPet---------Wv~vAEa~I~LGNL~d--~eS~eQe~~Y~eAE~iL~kAN~at~GKy~ 397 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDPET---------WVDVAEAMIDLGNLYD--NESKEQEKAYKEAEKILKKANKATNGKYQ 397 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--TTH---------HHHHHHHHHHHHHH-S--SHHH-HHHHHHHHHHHHHHHHHTT----H
T ss_pred HHHHHHHHHHHHHHHhhccCChhH---------HHHHHHHHhhhhcccc--cchHHHHHHHHHHHHHHHHHhhccccchH
Confidence 478888888888655544212222 23333 5677777764 33344567777777777777666666666
Q ss_pred HHHHHH
Q 013549 323 VVLTCL 328 (441)
Q Consensus 323 ~~l~nL 328 (441)
..|.||
T Consensus 398 diLdnL 403 (404)
T PF12753_consen 398 DILDNL 403 (404)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 666554
No 398
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=36.20 E-value=1.6e+02 Score=26.48 Aligned_cols=53 Identities=11% Similarity=0.180 Sum_probs=40.0
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
..+|+-|+=++++....+.+...+....-+|..|...|+-.+|.++..+|-+-
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 37999999999999888766667788889999999999999999999999763
No 399
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.12 E-value=5.2e+02 Score=26.88 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=44.2
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH---HHHHHHHHHHcCCHH------HHHHH
Q 013549 232 YGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA---TFALGQLEAHMGNFG------DAEEI 302 (441)
Q Consensus 232 ~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a---l~nLg~ly~~qG~y~------eAe~l 302 (441)
+|-+.+++|+..||..+++.-..- + +.+..-+.| +. .+-+ +...+.+..-.-+|| -|--.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke------~---pl~t~lnih-eN-LiEalLE~QAYADvqavLakYDdislPkSA~ic 349 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE------F---PLLTMLNIH-EN-LLEALLELQAYADVQAVLAKYDDISLPKSAAIC 349 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh------c---cHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHhhccccCcchHHHH
Confidence 577788999999999998764321 1 011100110 10 0111 223344444445555 36667
Q ss_pred HHHHHHHHHHhhCCCCchHHH
Q 013549 303 LTRTLTKTEELFGSHHPKVGV 323 (441)
Q Consensus 303 ~~rAL~i~e~~lG~~HP~va~ 323 (441)
|.-||-....+-..-.|++++
T Consensus 350 YTaALLK~RAVa~kFspd~as 370 (556)
T KOG3807|consen 350 YTAALLKTRAVSEKFSPETAS 370 (556)
T ss_pred HHHHHHHHHHHHhhcCchhhh
Confidence 777777777766666666654
No 400
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=36.06 E-value=1.6e+02 Score=30.44 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
.+.-.|++|..-|+++.|--+|.|-..++-+.+ ++||+.+..--+.-.++.... +++ |-..++|+.+-++-+
T Consensus 37 ei~rmA~VY~~EgN~enafvLy~ry~tLfiEki-pkHrDy~s~k~ek~d~~~klk--~~~--~p~~deL~~~ll~rY 108 (424)
T KOG2880|consen 37 EILRMANVYLEEGNVENAFVLYLRYITLFIEKI-PKHRDYRSVKPEKEDIRKKLK--EEA--FPRIDELKAKLLKRY 108 (424)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhc-ccCcchhhhchhHHHHHHHHH--HHh--hhhHHHHHHHHHHHH
Confidence 356789999999999999999999999999876 689999977777766665543 444 556677777776665
No 401
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=35.82 E-value=1.5e+02 Score=26.70 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCch-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 013549 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~-~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i 137 (441)
.....+-.|||-.+-++. +..+-++.+.++|..+. . +|| .--.++.-||.-+++.|+|++++.+...-++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~-~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLK-S------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhh-h------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344556667777665553 55678899999998886 2 233 34567888899999999999998877765544
Q ss_pred h
Q 013549 138 K 138 (441)
Q Consensus 138 ~ 138 (441)
.
T Consensus 101 e 101 (149)
T KOG3364|consen 101 E 101 (149)
T ss_pred C
Confidence 3
No 402
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=35.63 E-value=1.6e+02 Score=31.39 Aligned_cols=102 Identities=10% Similarity=-0.054 Sum_probs=62.1
Q ss_pred HHHhcCCcchhHHHHHHHHHHHHhcC--CC-cchhhhhhHhHHHHH---HHHHHHHcCCHHHHHHHHHhhhhccCCchHH
Q 013549 155 LYLQLGQDDTSSVVADKCLQLCEKHK--PE-NYKTYGAVNSRANAV---KGLVELAHGNLESAESFFKGLQEEEGCTGSA 228 (441)
Q Consensus 155 l~~~~G~~~~A~~l~~~~L~i~~~~~--~~-~~~~~~~l~~~a~al---~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~ 228 (441)
-++.+++|..|..-+..+|++..+.. +. .+..++++...+..+ +-+.|+..++.+-|...-.|++.-.+.+..-
T Consensus 185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frn 264 (569)
T PF15015_consen 185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRN 264 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhH
Confidence 35567777777777777777765443 11 122233433222222 3456788999999999999998855544444
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVL 256 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~ 256 (441)
.+.-|.+++...||.||-.-..-|.=++
T Consensus 265 HLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 265 HLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666667777777766555554443
No 403
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=35.37 E-value=43 Score=27.26 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.1
Q ss_pred hhCCCCchHHHHHHHHHHHHHHhh
Q 013549 313 LFGSHHPKVGVVLTCLALMFRNKA 336 (441)
Q Consensus 313 ~lG~~HP~va~~l~nLa~ly~~qG 336 (441)
-|=.+||.++.++.++..+..++|
T Consensus 61 ~FE~~HP~l~~~lr~i~~sLa~MG 84 (85)
T PF14357_consen 61 RFEASHPKLAGILRNIMDSLANMG 84 (85)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHCC
Confidence 344699999999999999999887
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.32 E-value=2.5e+02 Score=29.64 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH----HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKV----ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ 174 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ra----l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~ 174 (441)
++..|..++.-.|+|..|++..+-. ..+.....+..+.+.+.+|-.|+-+++|.+|...+..+|-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777889999999999887642 1122222333455677788889999999999988887763
No 405
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.07 E-value=60 Score=27.52 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
+..|+.+|...|.+++|.+++.+--.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56899999999999999999987655
No 406
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.85 E-value=70 Score=33.16 Aligned_cols=66 Identities=6% Similarity=-0.062 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHH
Q 013549 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEK 130 (441)
Q Consensus 61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~ 130 (441)
.+.+++-.+.-+ . .+++|+.|...|.+|..+.....|..|..+...+.--|..+...++...+.-.
T Consensus 40 ~~e~lv~~G~~~---~-~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 40 TLEELVQAGRRA---L-CNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHhhhHH---H-hcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444443 3 57899999999999999999999999999999999999999999888877633
No 407
>PRK10941 hypothetical protein; Provisional
Probab=34.00 E-value=2.4e+02 Score=27.90 Aligned_cols=67 Identities=10% Similarity=-0.101 Sum_probs=52.5
Q ss_pred hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
.+..|.....-.++...++++.|..+-++.+.-.+..+.-.-.-|-+|...|.+..|..-++.-|+.
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3444444444566789999999999999999966656555556788899999999999999998876
No 408
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=33.78 E-value=5.6e+02 Score=30.82 Aligned_cols=32 Identities=16% Similarity=0.062 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Q 013549 283 TFALGQLEAHMGN-FGDAEEILTRTLTKTEELF 314 (441)
Q Consensus 283 l~nLg~ly~~qG~-y~eAe~l~~rAL~i~e~~l 314 (441)
....|++.....+ -.+=..+.+|-+.++|+..
T Consensus 1067 ~e~~~~~~~~L~~~k~~f~~yk~RLl~vRe~k~ 1099 (1265)
T KOG1920|consen 1067 LEAFGEVLEFLEDVKEQFVKYKKRLLVVRENKE 1099 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555544 3344566777888888554
No 409
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=33.77 E-value=2.2e+02 Score=25.67 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH-HHHHHHHHHHHHhhchhhh
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va-~~l~nLa~ly~~qG~~eeA 341 (441)
+..+..|||-.+...-+-++ -++-+.|.|+++-..||.-- ..+.-||.-+.+.++|++|
T Consensus 31 s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s 90 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKS 90 (149)
T ss_pred hHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHH
Confidence 45678899988887666544 57889999999988898754 7788999999999999988
No 410
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.61 E-value=4.4e+02 Score=24.97 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
....+|.+..+.|+-++|+..|..+-.....--..+-.+.-.-+.+.+..|-|++-+...+.. ..+...
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL-----------a~d~n~ 164 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL-----------AGDGNP 164 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhc-----------cCCCCh
Q ss_pred hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh---ccCCchHHHHHHHHHHHHccC
Q 013549 190 VNSRANAVKGLVELAHGNLESAESFFKGLQE---EEGCTGSAALSYGEYLHATRN 241 (441)
Q Consensus 190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~---~~~~~~~~a~~~a~~~~~qG~ 241 (441)
+-..++--+|++.+.-|+|..|.++|++..+ .....-+-+.-+-.+-..-|+
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~mldlI~s~g~ 219 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIMLDLIDSSGK 219 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHHHHHHhcccc
No 411
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=31.95 E-value=1.9e+02 Score=29.47 Aligned_cols=66 Identities=17% Similarity=0.027 Sum_probs=51.6
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
+..|..-|+|.+|.++.+|++..- .+. + .....|=++|..+|+--.|...|++--...++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld----------pL~------e----~~nk~lm~~la~~gD~is~~khyerya~vlea 345 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD----------PLS------E----QDNKGLMASLATLGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC----------hhh------h----HHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 456778899999999999999871 111 1 12346777888999999999999999999999
Q ss_pred hhCCCC
Q 013549 313 LFGSHH 318 (441)
Q Consensus 313 ~lG~~H 318 (441)
-+|-+-
T Consensus 346 elgi~v 351 (361)
T COG3947 346 ELGIDV 351 (361)
T ss_pred HhCCCc
Confidence 998653
No 412
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.95 E-value=66 Score=31.52 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=44.7
Q ss_pred HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
..|+++.|-++|.+++.--+........++....+-|+++.|..-|++.|+|
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 6789999999999999965555556677888888899999999999999998
No 413
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=31.86 E-value=3.9e+02 Score=27.30 Aligned_cols=149 Identities=13% Similarity=0.001 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Q 013549 106 WRGISLLAMSTLLYESGNY---------VEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLC 176 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y---------~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~ 176 (441)
..+.++.|+|.++...|.- .+|..+|++| -|+-....++...........|.......-...+.
T Consensus 117 Eka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~A-------AG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lm 189 (346)
T cd09240 117 EKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQA-------AGIFNHLKETVLSALQQEPTPDLSPDTLSALSALM 189 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-------HHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHH
Q ss_pred HhcC-CCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh---------------ccCCchHHHHHHHHHHHHcc
Q 013549 177 EKHK-PENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE---------------EEGCTGSAALSYGEYLHATR 240 (441)
Q Consensus 177 ~~~~-~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~---------------~~~~~~~~a~~~a~~~~~qG 240 (441)
-.+- .--+..+..-......+.-++....--|++|...+..... ..--...+.+-.|..+...+
T Consensus 190 LAQAQE~~~~Kai~~~~k~~liAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~ 269 (346)
T cd09240 190 LAQAQEVFYLKATRDKMKDAIIAKLAAQAADYYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQK 269 (346)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q ss_pred ChHHHHHHHHHHHHHHHhhcc
Q 013549 241 NFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 241 ~y~eA~~ly~rAL~i~~~~~~ 261 (441)
+|.||+..++.|+...++.+.
T Consensus 270 k~GeaIa~L~~A~~~~~~a~~ 290 (346)
T cd09240 270 KFGEEIARLQHALELIKTAQS 290 (346)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
No 414
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=31.37 E-value=6.3e+02 Score=26.41 Aligned_cols=180 Identities=13% Similarity=0.050 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHhcCC-c-------chhHHHHHHHHHHHHhc
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-RVAAMEALAGLYLQLGQ-D-------DTSSVVADKCLQLCEKH 179 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~-~~~al~~La~l~~~~G~-~-------~~A~~l~~~~L~i~~~~ 179 (441)
..+--||++.+-.|+|+-|...|+-..+-....-.- -.++...++++..-++. . ++...+++.+...+.+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 456679999999999999999998764432110000 01222333333222222 1 36677788877776662
Q ss_pred CCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc--cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Q 013549 180 KPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE--EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLA 257 (441)
Q Consensus 180 ~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~--~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~ 257 (441)
.... ........|...+..-+....|.|.+|-..+-+.... +....... +--++||+=..+.
T Consensus 289 ~~~~-~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~---------------~alllE~~a~~~~ 352 (414)
T PF12739_consen 289 ALPR-CSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFG---------------SALLLEQAAYCYA 352 (414)
T ss_pred hccc-cccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHh---------------hHHHHHHHHHhhc
Confidence 1000 0001133343333344445788887777666665543 22222111 1122222222210
Q ss_pred hhcccCCCCCccccccchhHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549 258 EQKDFSDMNTLGSCNMALEEVALAAT--FALGQLEAHMGNFGDAEEILTRTLTKTE 311 (441)
Q Consensus 258 ~~~~~~~~~~lg~~~~~~~~~~~~al--~nLg~ly~~qG~y~eAe~l~~rAL~i~e 311 (441)
... .+.+..+ ....+-.++ .--|.-|..+|+...|..+|.+|+.+|+
T Consensus 353 -~~~-~~~~~~~-----~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 353 -SLR-SNRPSPG-----LTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred -ccc-cCCCCcc-----chhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 011 0011111 011122222 2347799999999999999999999998
No 415
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.71 E-value=1.2e+02 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549 112 LAMSTLLYESGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 112 ~nLa~l~~~qG~y~eA~e~~~ral~i~ 138 (441)
...|.-....|+|.+|..+|+.+++..
T Consensus 10 ~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 10 IRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333444566666666666665544
No 416
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.56 E-value=17 Score=37.22 Aligned_cols=84 Identities=7% Similarity=-0.012 Sum_probs=61.9
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
++|.+++|+..+..+.. -.|..+..+.+-+.++...++...||.-|-.++.|.+..-. .+---+..+.
T Consensus 126 n~G~~~~ai~~~t~ai~--------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~----~ykfrg~A~r 193 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK----GYKFRGYAER 193 (377)
T ss_pred cCcchhhhhcccccccc--------cCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc----ccchhhHHHH
Confidence 67888888888888874 46778999999999999999999999999999888776421 1111122344
Q ss_pred hcCCcchhHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCL 173 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L 173 (441)
.+|++.++..++..+.
T Consensus 194 llg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALAC 209 (377)
T ss_pred HhhchHHHHHHHHHHH
Confidence 5677777766665553
No 417
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.16 E-value=96 Score=18.70 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHhhhhccCCchHHHHHHH
Q 013549 206 GNLESAESFFKGLQEEEGCTGSAALSYG 233 (441)
Q Consensus 206 G~y~eAe~l~~~aL~~~~~~~~~a~~~a 233 (441)
|+++.|..+|++++...+.....-..|.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567777777777775444444444443
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.28 E-value=2.1e+02 Score=24.75 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
|.-+...|.++..+|+|.+|.+.|++
T Consensus 99 A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 99 ALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44555666666666666666666654
No 419
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.85 E-value=4.1e+02 Score=28.25 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=53.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhh---ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549 198 KGLVELAHGNLESAESFFKGLQE---EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~---~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~ 274 (441)
.|.-|...|+++.|.++|-|+-+ ...+..+...++-.+-..+|+|..=..+--+|-.---... .... ..
T Consensus 156 l~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~------~~~q--~v 227 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE------NLAQ--EV 227 (466)
T ss_pred HHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh------hHHH--hc
Confidence 46677789999999999999777 2223344444544444566777655554444433210000 0000 00
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 275 LEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
| ..+.+...|+.+ .+++|..|-.+|..+
T Consensus 228 ~--~kl~C~agLa~L--~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 228 P--AKLKCAAGLANL--LLKKYKSAAKYFLLA 255 (466)
T ss_pred C--cchHHHHHHHHH--HHHHHHHHHHHHHhC
Confidence 0 023344555554 445999888887654
No 420
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=27.82 E-value=1.1e+02 Score=25.88 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 321 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v 321 (441)
.+..-|..|...|+.+.|=-+|.|.+.+. ..=+.||+.
T Consensus 40 ~l~~~A~~~~~egd~E~AYvl~~R~~~L~--~ki~~Hpdy 77 (115)
T PF08969_consen 40 KLLREAEEYRQEGDEEQAYVLYMRYLTLV--EKIPKHPDY 77 (115)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--CCHCCSCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHhhcCccc
Confidence 46778999999999999999999999999 344788874
No 421
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=27.78 E-value=2.4e+02 Score=23.52 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhc
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEE 221 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~ 221 (441)
..|+..+..|+|.+|++...++-+.
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4588888999999999999999664
No 422
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=27.70 E-value=4.9e+02 Score=26.04 Aligned_cols=74 Identities=16% Similarity=0.101 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
.+.++..++..+...|+++.+++.+++-+. .||..-..+.-|=..|...|+...| +..|++.-..+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~a------i~~y~~l~~~~ 217 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAA------IRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHH------HHHHHHHHHHh
Confidence 345677899999999999999999988764 6888888888888999999998876 88888887765
Q ss_pred -hcCCCCCc
Q 013549 359 -KAPPLESE 366 (441)
Q Consensus 359 -~~~~~~~~ 366 (441)
+.++++-.
T Consensus 218 ~edlgi~P~ 226 (280)
T COG3629 218 AEELGIDPA 226 (280)
T ss_pred hhhcCCCcc
Confidence 44454433
No 423
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=26.88 E-value=2.8e+02 Score=22.77 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~ 138 (441)
...+..|...++++-...-...-+.+...|.-...-|...+..|+|.+|..+.+++....
T Consensus 16 ~~~l~~A~~ai~~A~~~~a~~~Ap~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~A 75 (103)
T PF14346_consen 16 NEELSDAEAAIQRAEAAGAEQYAPVELKEAREKLQRAKAALDDGDYERARRLAEQAQADA 75 (103)
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345667777777776654334445677788888888999999999999999988875443
No 424
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=26.73 E-value=8e+02 Score=26.15 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLL---YESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAG 154 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~---~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~ 154 (441)
-.|+|+.|..-||-.+. .|.+ -+..|=.+| .++|.++-|+.+-+++-...+... =+.....+
T Consensus 132 ~eG~~~~Ar~kfeAMl~---------dPEt--RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~----WA~~AtLe 196 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---------DPET--RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP----WAARATLE 196 (531)
T ss_pred hcCchHHHHHHHHHHhc---------ChHH--HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc----hHHHHHHH
Confidence 46899999999999884 3332 133333343 678999999999998866554321 02222333
Q ss_pred HHHhcCCcchhHHHHHHHH
Q 013549 155 LYLQLGQDDTSSVVADKCL 173 (441)
Q Consensus 155 l~~~~G~~~~A~~l~~~~L 173 (441)
-.++-|+++.|..+.+...
T Consensus 197 ~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHhcCChHHHHHHHHHHH
Confidence 3456799999988877654
No 425
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.17 E-value=9.4e+02 Score=26.78 Aligned_cols=134 Identities=20% Similarity=0.195 Sum_probs=84.0
Q ss_pred cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC--
Q 013549 240 RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH-- 317 (441)
Q Consensus 240 G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~-- 317 (441)
..|++|...|.-|..+.. .+..+-.-..+|- ++.++.-++....-||+.+-|-.+.+|+|=.+++.+-+.
T Consensus 252 ~sYeqaq~~F~~av~~~d------~n~v~~lL~ssPY--HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~ 323 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHD------PNNVLILLISSPY--HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFI 323 (665)
T ss_pred hHHHHHHHHHHHHHhhcC------CcceeeeeccCCc--chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccc
Confidence 457899999988887731 1122211112243 356888999999999999999999999999999987543
Q ss_pred -----------CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC-CCC-CcchHhhhccHHHHHHHhcc
Q 013549 318 -----------HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLE-SEGVETKVDRTDIVALARGG 384 (441)
Q Consensus 318 -----------HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~-~~~-~~~~~~~l~nl~~~~~~~g~ 384 (441)
||.-...+- .+|+.+-. +...+..+.|++..|.. ..+ .++....+.-++..++....
T Consensus 324 ~~sg~cRL~y~~~eNR~FyL---~l~r~m~~-------l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrare 393 (665)
T KOG2422|consen 324 PFSGNCRLPYIYPENRQFYL---ALFRYMQS-------LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRARE 393 (665)
T ss_pred cccccccCcccchhhHHHHH---HHHHHHHH-------HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHh
Confidence 232222222 23333322 23367888899888753 222 22444455556666666667
Q ss_pred HHHHHHH
Q 013549 385 YAEALSV 391 (441)
Q Consensus 385 yaeal~~ 391 (441)
|+=.+..
T Consensus 394 YqwiI~~ 400 (665)
T KOG2422|consen 394 YQWIIEL 400 (665)
T ss_pred HHHHHHH
Confidence 7544443
No 426
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.15 E-value=64 Score=34.48 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=47.7
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
..-..|+.|..+|-+||++ . ++. +....|-+..+...++|..|..=..+|++.-
T Consensus 15 l~~~~fd~avdlysKaI~l---d-----pnc------------a~~~anRa~a~lK~e~~~~Al~Da~kaie~d------ 68 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL---D-----PNC------------AIYFANRALAHLKVESFGGALHDALKAIELD------ 68 (476)
T ss_pred cccchHHHHHHHHHHHHhc---C-----Ccc------------eeeechhhhhheeechhhhHHHHHHhhhhcC------
Confidence 3457899999999999988 1 111 0112355566667777777777666666543
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhh
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
|.....+.--|..+...+++-+|
T Consensus 69 --P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 69 --PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred --chhhheeeeccHHHHhHHHHHHH
Confidence 66655555555555555555444
No 427
>PF08360 TetR_C_5: QacR-like protein, C-terminal region; InterPro: IPR013571 This entry represents the C-terminal domain found in the multidrug-binding transcription regulator QacR (P23217 from SWISSPROT) from Staphylococcus aureus, which is a member of the TetR (tetracycline-resistance) transcriptional regulator family of proteins. QacR is able to bind various environmental agents, which include a number of cationic lipophilic compounds, and thus regulate the transcription of QacA (P23215 from SWISSPROT), a multidrug efflux pump []. The C-terminal region of QacR contains a multifaceted, expansive drug-binding pocket, which is composed of several separate, but linked, binding sites []. The C-terminal domains of QacR and TetR share a multi-helical, interlocking structure.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G0E_E 1JUM_A 1RPW_D 1QVT_B 2HQ5_D 1JT0_B 2DTZ_E 1JUP_D 1JT6_D 1JUS_E ....
Probab=26.15 E-value=1.5e+02 Score=26.01 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 243 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA---ATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 243 ~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~---al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
......|++.|+--.+... +-.+ +++.++.. .+++|.+.+... +.++.+++|++|++|+-+
T Consensus 64 ~~~~~~~~~ileeGI~~GE------F~~~--dv~~~a~il~s~l~GL~~~~~~~-~~~e~~~l~~~ai~ifL~ 127 (131)
T PF08360_consen 64 RKYLEFFQKILEEGIDSGE------FSID--DVEELAYILMSLLDGLSQWYYEK-DKEELEALYRKAIDIFLK 127 (131)
T ss_dssp HHHHHHHHHHHHHHHTTTS------S--S--THHHHHHHHHHHHHHHHHTTTSS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCc------ccCC--CHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 3457777777764332222 2322 24433222 356788777765 469999999999999865
No 428
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=26.14 E-value=43 Score=27.23 Aligned_cols=23 Identities=13% Similarity=-0.083 Sum_probs=20.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHcC
Q 013549 100 GQLAESWRGISLLAMSTLLYESG 122 (441)
Q Consensus 100 ~g~~h~~~a~~l~nLa~l~~~qG 122 (441)
+..+||.++.++.++...+..+|
T Consensus 62 FE~~HP~l~~~lr~i~~sLa~MG 84 (85)
T PF14357_consen 62 FEASHPKLAGILRNIMDSLANMG 84 (85)
T ss_pred HHHhCCcHHHHHHHHHHHHHHCC
Confidence 34579999999999999999988
No 429
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=25.15 E-value=7.1e+02 Score=24.99 Aligned_cols=20 Identities=25% Similarity=0.092 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHHHHHhhc
Q 013549 241 NFLLAKKFYQKVIEVLAEQK 260 (441)
Q Consensus 241 ~y~eA~~ly~rAL~i~~~~~ 260 (441)
...+|..++++|-.++.-..
T Consensus 136 ~~k~A~~~fq~AAG~F~~l~ 155 (345)
T cd09034 136 DLKQAIKSLQKAAGYFEYLK 155 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46678888888887765443
No 430
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.13 E-value=1.6e+03 Score=29.25 Aligned_cols=142 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc---
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN--- 183 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~--- 183 (441)
++.++.+.|.+-+.-|+++.|-...-.|.+..... +.-..+-+.+++|+...|.-+.+..+..........
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~------i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRLPE------IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccch------HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Q ss_pred --chhhhhhHhHHHHHHHHHHHHcCCH--HHHHHHHHhhhh----ccCCchHHHHHHHHHHHHc--------cChHH---
Q 013549 184 --YKTYGAVNSRANAVKGLVELAHGNL--ESAESFFKGLQE----EEGCTGSAALSYGEYLHAT--------RNFLL--- 244 (441)
Q Consensus 184 --~~~~~~l~~~a~al~gl~~~~qG~y--~eAe~l~~~aL~----~~~~~~~~a~~~a~~~~~q--------G~y~e--- 244 (441)
......+..+++.+.+...-..|++ ++=++.|+.+.+ .++.+-..+.-|..++-.+ |++.-
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~ 1822 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK 1822 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH
Q ss_pred HHHHHHHHHH
Q 013549 245 AKKFYQKVIE 254 (441)
Q Consensus 245 A~~ly~rAL~ 254 (441)
|.-.|.+||.
T Consensus 1823 ~~~~~~~sl~ 1832 (2382)
T KOG0890|consen 1823 AIYFFGRALY 1832 (2382)
T ss_pred HHHHHHHHHH
No 431
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.10 E-value=9.2e+02 Score=26.29 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-----NYVEAIEKLQKVENFKNSILGVRVAAMEALA 153 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG-----~y~eA~e~~~ral~i~~~~lg~~~~al~~La 153 (441)
..+...|+.+|+.+..-..+. .+-....+.+.||.+|.+.. ++..|..+|.++-..... .+...|+
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~---a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~------~a~~~lg 332 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKA---ATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP------DAQYLLG 332 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHH---HhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc------hHHHHHH
Confidence 346889999999998721000 00012225888999988854 678899999987544332 1445666
Q ss_pred HHHHhcC---CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHH----HcCCHHHHHHHHHhhhhccCCch
Q 013549 154 GLYLQLG---QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVEL----AHGNLESAESFFKGLQEEEGCTG 226 (441)
Q Consensus 154 ~l~~~~G---~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~----~qG~y~eAe~l~~~aL~~~~~~~ 226 (441)
.+|..-. ++..|..++..+. +.+.. .++ .-.++.|. ..-+.+.|-.+|.++-..++ +
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa----~~G~~-----~A~-----~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~ 396 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAA----KAGHI-----LAI-----YRLALCYELGLGVERNLELAFAYYKKAAEKGN--P 396 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHH----HcCCh-----HHH-----HHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--h
Confidence 6665433 1245666665552 11110 111 01222221 13368899999999888442 2
Q ss_pred HHHHHHHHHHH-HccChHHHHHHHHHHHHH
Q 013549 227 SAALSYGEYLH-ATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 227 ~~a~~~a~~~~-~qG~y~eA~~ly~rAL~i 255 (441)
.+...++.++. ..|+++.+...|...-+.
T Consensus 397 ~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 397 SAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred hhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 23333332221 127777777666655544
No 432
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.10 E-value=8.9e+02 Score=26.12 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=63.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHH-----------H---HHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGV-----------V---LTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~-----------~---l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
..-..++|+.-+-+|-.-+++.+|++|..+-. . .---|.+...||+-++| -..+++|..-
T Consensus 223 nitcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deA------ye~le~a~~~ 296 (568)
T KOG2561|consen 223 NITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEA------YEALESAHAK 296 (568)
T ss_pred ccccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHH
Confidence 34567899999999999999999988866533 2 12237788899999887 6777788777
Q ss_pred hhcCCCCCcchHhhhc--------cHHHHHHHhccHHHHHHH-hhchhhHH
Q 013549 358 LKAPPLESEGVETKVD--------RTDIVALARGGYAEALSV-QQNRKDEG 399 (441)
Q Consensus 358 ~~~~~~~~~~~~~~l~--------nl~~~~~~~g~yaeal~~-~~~r~~ea 399 (441)
+...-..|.....-+. .+| +-...|+.+.|... ++.|...+
T Consensus 297 l~elki~d~~lsllv~mGfeesdaRla-LRsc~g~Vd~AvqfI~erre~la 346 (568)
T KOG2561|consen 297 LLELKINDETLSLLVGMGFEESDARLA-LRSCNGDVDSAVQFIIERREKLA 346 (568)
T ss_pred HHHeeccchHHHHHHHcCCCchHHHHH-HHhccccHHHHHHHHHHHHHHHH
Confidence 7544444432111110 111 22355788888775 44444334
No 433
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=8.8e+02 Score=25.87 Aligned_cols=135 Identities=12% Similarity=0.037 Sum_probs=73.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHH-hh---hhhhhh-hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 115 STLLYESGNYVEAIEKLQKVEN-FK---NSILGV-RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 115 a~l~~~qG~y~eA~e~~~ral~-i~---~~~lg~-~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
...++++-+|.+|.+.-...+. +. .+++.. ....+.-+.-.|...|+...-..++...+.+..-.+.. ..+..
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~--e~qav 210 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDE--EGQAV 210 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcc--hhHHH
Confidence 3446888999999877665432 11 111111 11233334444556666444444444444443333211 01111
Q ss_pred hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--chHHHH--HHHHHHHHccChHHHHHHHHHHHHH
Q 013549 190 VNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC--TGSAAL--SYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~--~~~~a~--~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
+ .+++-.-|+..+.|++|..+-.++.--+.. ...+-+ -+|.+..-|++|+.|..++-+|+.-
T Consensus 211 L----iN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 211 L----INLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred H----HHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 1 122223356788999999998887652221 122222 2377888899999999999998854
No 434
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=24.30 E-value=3.5e+02 Score=24.40 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhh---------------------------------------ccCCchHHHHHHHHHHHH
Q 013549 198 KGLVELAHGNLESAESFFKGLQE---------------------------------------EEGCTGSAALSYGEYLHA 238 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~---------------------------------------~~~~~~~~a~~~a~~~~~ 238 (441)
.....+.+|+.++|.++..++.. ........+..-++-...
T Consensus 8 ~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l~ 87 (155)
T PF10938_consen 8 KARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELLK 87 (155)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHHh
Q ss_pred ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
.|+...|.+..+-+=.- ..-....-.++ +...-.+.+..+.++|+|+||-..+.+|++
T Consensus 88 ~g~~~~A~~~L~~~~~e---i~~~~~~lPL~---------~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 88 KGDKQAAREILKLAGSE---IDITTALLPLA---------QTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp TT-HHHHHHHHHHTT-E---EEEEEEEEEHH---------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc---ceeeeeeCCHH---------hhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
No 435
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=24.21 E-value=1.6e+02 Score=18.92 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=20.6
Q ss_pred HHHHHHH--HHhhhhc-cChhhHHHHHHHHHHhhh
Q 013549 63 LQMINYA--LSHARSQ-KSDESYSQGMLVLEQCLS 94 (441)
Q Consensus 63 ~~m~n~a--~~~~~~~-~~~g~y~eAl~~~eqaL~ 94 (441)
..+.++| ..+.... ...-++.+|+.+|+++-+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4567777 5442211 133469999999999875
No 436
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=23.95 E-value=3.9e+02 Score=23.74 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCCchHHHHHHHHHHHHHH
Q 013549 285 ALGQLEAHMGNFGDAEEILTRTLTKTEEL-FGSHHPKVGVVLTCLALMFRN 334 (441)
Q Consensus 285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~-lG~~HP~va~~l~nLa~ly~~ 334 (441)
..|.....++++.++-+.+.||.+|..+. .+-++-.=+..-.||-.+|..
T Consensus 36 ~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~y 86 (132)
T COG1516 36 KRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYDY 86 (132)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHHH
Confidence 34566778899999999999999999987 555555545666777788843
No 437
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=23.93 E-value=2.2e+02 Score=26.14 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=34.4
Q ss_pred HHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549 211 AESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVL 256 (441)
Q Consensus 211 Ae~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~ 256 (441)
.+...++.+...+ .+++..+++.++..+|+.+||....+++..++
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444445554433 56777889999999999999999999999884
No 438
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.86 E-value=9.1e+02 Score=25.79 Aligned_cols=158 Identities=12% Similarity=0.043 Sum_probs=90.1
Q ss_pred CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhc-cccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLST-QPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i-~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
.|-.+++..=|.-+..++ ...+-+|.||..+-+..+.- .-...-.-+--.|.++.-+..+|...|+..+=...+..
T Consensus 118 k~~~~Ei~aY~~lLv~Lf---l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~ 194 (493)
T KOG2581|consen 118 KPLPAEIEAYLYLLVLLF---LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHA 194 (493)
T ss_pred CCchHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344556666666555554 33566789998887766542 11111122445678888888888889997665555544
Q ss_pred HHHhhhhhhhh---hHH-HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHH
Q 013549 134 VENFKNSILGV---RVA-AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE 209 (441)
Q Consensus 134 al~i~~~~lg~---~~~-al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~ 209 (441)
-+..+ .|+. ..+ ..|.|...|..-+.|++|..+..+. ..|+...+ ... .|-..-.|.+..-|++|.
T Consensus 195 ~lrtA--tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~------~~pe~~sn-ne~-ARY~yY~GrIkaiqldYs 264 (493)
T KOG2581|consen 195 LLRTA--TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKS------VYPEAASN-NEW-ARYLYYLGRIKAIQLDYS 264 (493)
T ss_pred HHHHh--hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcc------cCcccccc-HHH-HHHHHHHhhHHHhhcchh
Confidence 33322 2221 122 3455666666666777666544332 11322111 111 222223566666799999
Q ss_pred HHHHHHHhhhhccCCc
Q 013549 210 SAESFFKGLQEEEGCT 225 (441)
Q Consensus 210 eAe~l~~~aL~~~~~~ 225 (441)
+|..+|-+|+..-+++
T Consensus 265 sA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 265 SALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhCcch
Confidence 9999999999854444
No 439
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.77 E-value=1.4e+02 Score=29.31 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg 143 (441)
.|++.-|.++|.|+|+. -|..+.....+|......|+++.|...|++++++.+.-.+
T Consensus 8 ~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 8 SGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 47888999999999973 4678888999999999999999999999999998876543
No 440
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=23.45 E-value=1.2e+02 Score=19.16 Aligned_cols=32 Identities=3% Similarity=-0.051 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhccChhhHHHHHHHHHHhhh
Q 013549 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLS 94 (441)
Q Consensus 63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~ 94 (441)
..+.++|..|..-....-++.+|+.+|+++-.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 35677887773321122378999999999864
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.95 E-value=4.7e+02 Score=31.48 Aligned_cols=57 Identities=25% Similarity=0.269 Sum_probs=34.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH--------HccCh----HHHHHHHHHHHHHHH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH--------ATRNF----LLAKKFYQKVIEVLA 257 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~--------~qG~y----~eA~~ly~rAL~i~~ 257 (441)
.|..|+..|+.-+|..+|.+|..+...- ++...+ ++. .+|+- ..|..+|.+++.+++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~-~aL~~l--v~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle 994 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEG-NALRKL--VYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLE 994 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccH-HHHHHH--HHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHH
Confidence 4666778889999999999998833211 121111 111 34442 236778888888864
No 442
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=22.56 E-value=1.3e+03 Score=27.01 Aligned_cols=13 Identities=23% Similarity=0.064 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhhh
Q 013549 208 LESAESFFKGLQE 220 (441)
Q Consensus 208 y~eAe~l~~~aL~ 220 (441)
|+-|..+|..++.
T Consensus 828 ~~~aLsLyd~sla 840 (1243)
T COG5290 828 NEFALSLYDKSLA 840 (1243)
T ss_pred HHHHhHHHHHHHH
Confidence 3445555544443
No 443
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=21.18 E-value=4.5e+02 Score=25.79 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=25.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549 292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337 (441)
Q Consensus 292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~ 337 (441)
...+++.+.+-.+++++-.++. ++|.-...+..|-.++..+.+
T Consensus 237 ~~~~l~~~l~~l~~~l~~~~~~---~~~~~~~~~~~l~~l~~~l~~ 279 (284)
T PF12805_consen 237 HRNRLKRALEALEESLEFLRQQ---DQPENREALLALRNLLDNLRN 279 (284)
T ss_pred CchHHHHHHHHHHHHHHHHHHh---cCccCHHHHHHHHHHHHHHHH
Confidence 3445666777777777777776 445545555555555555443
No 444
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=21.11 E-value=89 Score=33.43 Aligned_cols=97 Identities=16% Similarity=0.067 Sum_probs=60.1
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
+.-..|+.|..+|-++++-++.....-.+-+..+-..++|..|..=.-+|++. . +. .+-+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---d------P~-----------~~K~ 74 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---D------PT-----------YIKA 74 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc---C------ch-----------hhhe
Confidence 46778999999999999954422111112234566889999999999999887 1 11 1123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 324 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~ 324 (441)
+.-=|+.....|+|.+|..-|++.. .+-|+.|..-.-
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~-----~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVK-----KLAPNDPDATRK 111 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhh-----hcCcCcHHHHHH
Confidence 3344555555666666655555433 356777775543
No 445
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=21.06 E-value=8.8e+02 Score=24.60 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=57.1
Q ss_pred hccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 013549 75 SQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAG 154 (441)
Q Consensus 75 ~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~ 154 (441)
..++....-+|+.++|.++... |.--....-+-.+|...|-...|.++|.. +++. -..+..|+.
T Consensus 192 ~~~~~~~l~~Ai~lLE~~l~~s--------~~n~~~~LlLvrlY~~LG~~~~A~~~~~~-L~iK-------~IQ~DTL~h 255 (365)
T PF09797_consen 192 KTKDSEYLLQAIALLEHALKKS--------PHNYQLKLLLVRLYSLLGAGSLALEHYES-LDIK-------NIQLDTLGH 255 (365)
T ss_pred ccCCHHHHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHh-cChH-------HHHHHHhHH
Confidence 3446777889999999998643 33344556677889999999999999975 2222 112222222
Q ss_pred H----HHhcCCcchhH-HHHHHHHHHHHhcC
Q 013549 155 L----YLQLGQDDTSS-VVADKCLQLCEKHK 180 (441)
Q Consensus 155 l----~~~~G~~~~A~-~l~~~~L~i~~~~~ 180 (441)
+ ....|....+. .+++..+..+....
T Consensus 256 ~~~~r~~~~~~~~~~~~~~~~~~~~fy~~~~ 286 (365)
T PF09797_consen 256 LILDRLSTLGPFKSAPENLLENALKFYDNSE 286 (365)
T ss_pred HHHHHHhccCcccccchHHHHHHHHHHHHHH
Confidence 2 22356666665 66677666664443
No 446
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=20.97 E-value=1.4e+03 Score=26.77 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhhCCCCchHHHHHHH-HHHHHHHhhchhh
Q 013549 284 FALGQLEAHMGNFGDAEEILTR------TLTKTEELFGSHHPKVGVVLTC-LALMFRNKAMQEH 340 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~r------AL~i~e~~lG~~HP~va~~l~n-La~ly~~qG~~ee 340 (441)
+.-+..|...|+|.||...|+. |+.|..+.+|.+--.+|.-|-. |-..++.-|+-++
T Consensus 939 ~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e~~~~AE~L~S~l~ve~R~~~da~~ 1002 (1243)
T COG5290 939 ISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYEFNLCAELLPSDLLVEFRKAGDAEK 1002 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchHHHHHHHhhhhhHHHHHHHhcCHHH
Confidence 4556677888888888776655 4567777788776666665554 4444444555443
No 447
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=20.95 E-value=1.2e+03 Score=25.95 Aligned_cols=178 Identities=11% Similarity=0.009 Sum_probs=109.6
Q ss_pred CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (441)
Q Consensus 103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~ 182 (441)
..+.-..++..-...-...|+++...-+|+|.+--+-.-. .-|.+.+......|+.+-+.....++..+..+..+.
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~----efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~ 367 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD----EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI 367 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH----HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH
Confidence 3444455566666667789999999999999753331111 133344444445577666665555555555444321
Q ss_pred cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhccc
Q 013549 183 NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDF 262 (441)
Q Consensus 183 ~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~ 262 (441)
+ ..+.....-.+|+++.|..++++....-+....+.....+....+|+.+.+..+++---.+. .+
T Consensus 368 -------i----~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~---~~- 432 (577)
T KOG1258|consen 368 -------I----HLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIY---EG- 432 (577)
T ss_pred -------H----HHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc---cc-
Confidence 1 11223444579999999999999998555455556667888899999999996333333331 11
Q ss_pred CCCCCccccccchhHHHHH-HHHHHHH-HHHHcCCHHHHHHHHHHHHHHH
Q 013549 263 SDMNTLGSCNMALEEVALA-ATFALGQ-LEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 263 ~~~~~lg~~~~~~~~~~~~-al~nLg~-ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
....| .+. .+.+.+. .|...++-+.|..++.+++++.
T Consensus 433 --~~~~~---------i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 433 --KENNG---------ILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred --ccCcc---------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 11222 111 1234443 5677899999999999999875
No 448
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.15 E-value=8e+02 Score=23.75 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=19.1
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhh
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
+||..+..+..||.+....|++..+
T Consensus 70 ~~~~L~~a~~kLg~v~~~v~dl~~~ 94 (230)
T cd07625 70 THHGLGNLYEKFGKVLTAVGDIDSI 94 (230)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHHH
Confidence 7888888888888777777766554
Done!