Query 013549
Match_columns 441
No_of_seqs 231 out of 536
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:40:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a1s_A PINS, partner of inscut 99.9 3.6E-25 1.2E-29 221.2 34.0 301 57-394 43-368 (411)
2 3sf4_A G-protein-signaling mod 99.9 1.3E-24 4.4E-29 214.8 35.3 297 60-394 7-332 (406)
3 3ro2_A PINS homolog, G-protein 99.9 4.8E-24 1.6E-28 203.2 33.3 295 62-393 5-327 (338)
4 3sf4_A G-protein-signaling mod 99.9 4.4E-24 1.5E-28 210.9 31.2 297 55-386 39-364 (406)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.4E-24 1.2E-28 213.5 29.2 289 80-421 47-361 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-23 5.8E-28 208.5 32.4 290 78-420 11-326 (388)
7 3nf1_A KLC 1, kinesin light ch 99.9 4.1E-24 1.4E-28 203.5 25.6 282 51-359 16-309 (311)
8 4eqf_A PEX5-related protein; a 99.9 8.4E-24 2.9E-28 208.6 26.0 285 55-391 57-349 (365)
9 3n71_A Histone lysine methyltr 99.9 1.6E-24 5.5E-29 228.4 18.4 143 233-393 316-459 (490)
10 3ro2_A PINS homolog, G-protein 99.9 1.6E-22 5.6E-27 192.6 30.5 271 56-360 36-335 (338)
11 4a1s_A PINS, partner of inscut 99.9 2.3E-22 8E-27 200.8 32.7 288 103-419 43-363 (411)
12 3ulq_A Response regulator aspa 99.9 4.4E-22 1.5E-26 199.1 34.1 255 68-361 109-372 (383)
13 2y4t_A DNAJ homolog subfamily 99.9 5.4E-22 1.8E-26 200.1 32.2 310 56-420 20-350 (450)
14 3edt_B KLC 2, kinesin light ch 99.9 6.5E-23 2.2E-27 191.7 22.1 258 78-359 13-283 (283)
15 1fch_A Peroxisomal targeting s 99.9 3.1E-22 1E-26 196.2 25.9 279 62-393 64-354 (368)
16 3hym_B Cell division cycle pro 99.9 5.7E-22 2E-26 190.2 25.3 269 65-394 25-295 (330)
17 4eqf_A PEX5-related protein; a 99.9 1.5E-22 5.1E-27 199.7 20.9 252 60-359 97-358 (365)
18 4g1t_A Interferon-induced prot 99.9 1.2E-22 4.2E-27 206.9 20.5 299 55-394 44-359 (472)
19 3ieg_A DNAJ homolog subfamily 99.9 5.2E-21 1.8E-25 184.9 30.9 304 62-420 3-327 (359)
20 3nf1_A KLC 1, kinesin light ch 99.9 2.2E-21 7.6E-26 184.5 26.1 275 95-392 14-301 (311)
21 1fch_A Peroxisomal targeting s 99.9 7.4E-22 2.5E-26 193.5 23.3 284 78-422 37-353 (368)
22 3q15_A PSP28, response regulat 99.9 6.9E-21 2.3E-25 190.6 30.6 248 78-360 113-368 (378)
23 3ieg_A DNAJ homolog subfamily 99.9 1.5E-20 5.2E-25 181.6 29.6 282 62-393 37-330 (359)
24 2y4t_A DNAJ homolog subfamily 99.9 1.2E-20 4.1E-25 190.2 29.6 284 59-393 57-353 (450)
25 1hz4_A MALT regulatory protein 99.9 4E-20 1.4E-24 183.3 32.9 304 53-392 4-316 (373)
26 3cv0_A Peroxisome targeting si 99.9 5.5E-21 1.9E-25 183.1 25.4 290 54-394 12-311 (327)
27 2xpi_A Anaphase-promoting comp 99.9 1.6E-20 5.4E-25 196.6 30.4 284 78-421 284-572 (597)
28 4g1t_A Interferon-induced prot 99.9 4.7E-21 1.6E-25 195.1 25.1 264 74-385 19-297 (472)
29 3qww_A SET and MYND domain-con 99.9 1.8E-22 6.1E-27 209.7 14.4 122 237-376 309-431 (433)
30 3hym_B Cell division cycle pro 99.9 7.1E-21 2.4E-25 182.6 24.0 255 65-379 59-314 (330)
31 3ulq_A Response regulator aspa 99.9 2.4E-20 8.4E-25 186.4 28.5 249 112-393 107-363 (383)
32 2xpi_A Anaphase-promoting comp 99.9 2.2E-20 7.6E-25 195.5 28.9 271 59-392 302-573 (597)
33 3n71_A Histone lysine methyltr 99.9 6.1E-22 2.1E-26 208.7 16.5 139 202-358 319-465 (490)
34 3fp2_A TPR repeat-containing p 99.9 4.8E-20 1.7E-24 189.7 29.7 277 57-392 20-401 (537)
35 3uq3_A Heat shock protein STI1 99.9 5.2E-20 1.8E-24 170.3 26.0 234 59-359 2-238 (258)
36 3u4t_A TPR repeat-containing p 99.9 3.2E-20 1.1E-24 174.5 23.4 250 64-368 5-257 (272)
37 3edt_B KLC 2, kinesin light ch 99.9 3.3E-20 1.1E-24 173.3 23.3 252 118-392 11-275 (283)
38 3qwp_A SET and MYND domain-con 99.9 1E-21 3.5E-26 203.7 14.2 129 234-380 295-424 (429)
39 3fp2_A TPR repeat-containing p 99.9 2.8E-19 9.7E-24 184.0 31.5 297 61-418 58-481 (537)
40 3q15_A PSP28, response regulat 99.9 1.7E-19 6E-24 180.4 28.3 253 110-396 103-363 (378)
41 2gw1_A Mitochondrial precursor 99.9 8.3E-20 2.8E-24 186.3 26.4 282 59-393 183-473 (514)
42 1hz4_A MALT regulatory protein 99.9 5.5E-19 1.9E-23 175.1 29.7 264 60-360 51-325 (373)
43 2pl2_A Hypothetical conserved 99.8 2.5E-20 8.6E-25 173.4 17.7 196 108-354 5-211 (217)
44 2gw1_A Mitochondrial precursor 99.8 4.8E-19 1.6E-23 180.6 28.0 265 107-419 185-469 (514)
45 2ifu_A Gamma-SNAP; membrane fu 99.8 1.3E-18 4.6E-23 170.2 28.3 239 78-390 3-253 (307)
46 3uq3_A Heat shock protein STI1 99.8 1.8E-18 6E-23 159.9 27.4 230 105-393 2-231 (258)
47 3cv0_A Peroxisome targeting si 99.8 1.2E-19 4.1E-24 173.7 19.8 248 62-359 55-317 (327)
48 1ouv_A Conserved hypothetical 99.8 9.4E-18 3.2E-22 159.3 27.2 222 62-357 6-251 (273)
49 1xnf_A Lipoprotein NLPI; TPR, 99.8 9.2E-18 3.2E-22 157.2 25.8 254 77-392 16-269 (275)
50 2pl2_A Hypothetical conserved 99.8 6.4E-19 2.2E-23 163.9 17.7 197 62-307 5-212 (217)
51 3u4t_A TPR repeat-containing p 99.8 2.1E-18 7E-23 162.0 20.7 237 109-392 4-244 (272)
52 1qqe_A Vesicular transport pro 99.8 3E-18 1E-22 166.5 21.6 210 79-333 30-249 (292)
53 4gyw_A UDP-N-acetylglucosamine 99.8 2.2E-18 7.4E-23 189.6 21.6 173 102-358 3-175 (723)
54 3vtx_A MAMA; tetratricopeptide 99.8 1.4E-17 4.7E-22 148.6 21.1 167 107-357 4-170 (184)
55 2h6f_A Protein farnesyltransfe 99.8 7.6E-18 2.6E-22 171.9 21.9 223 58-337 93-324 (382)
56 2ho1_A Type 4 fimbrial biogene 99.8 3.2E-17 1.1E-21 152.4 24.1 205 57-357 31-238 (252)
57 3qww_A SET and MYND domain-con 99.8 1.1E-18 3.6E-23 181.3 13.5 114 204-329 310-431 (433)
58 2ifu_A Gamma-SNAP; membrane fu 99.8 6.8E-18 2.3E-22 165.1 18.5 212 120-394 3-220 (307)
59 2q7f_A YRRB protein; TPR, prot 99.8 1.1E-17 3.7E-22 153.8 18.1 213 60-325 21-233 (243)
60 1ouv_A Conserved hypothetical 99.8 9.3E-17 3.2E-21 152.4 24.7 219 105-392 3-245 (273)
61 2q7f_A YRRB protein; TPR, prot 99.8 1.4E-17 4.6E-22 153.2 18.1 203 105-357 20-222 (243)
62 1qqe_A Vesicular transport pro 99.8 1.7E-17 5.8E-22 161.1 19.1 224 56-307 30-267 (292)
63 3qwp_A SET and MYND domain-con 99.8 4.2E-18 1.4E-22 176.6 14.7 121 203-335 298-426 (429)
64 2h6f_A Protein farnesyltransfe 99.8 5.2E-17 1.8E-21 165.7 22.3 223 103-383 92-323 (382)
65 2vq2_A PILW, putative fimbrial 99.8 2.9E-16 1E-20 141.9 24.7 213 103-369 3-219 (225)
66 3mkr_A Coatomer subunit epsilo 99.8 3.1E-16 1E-20 153.2 26.7 223 78-369 46-272 (291)
67 4gyw_A UDP-N-acetylglucosamine 99.8 2.2E-17 7.7E-22 181.5 20.7 178 57-316 4-181 (723)
68 4abn_A Tetratricopeptide repea 99.8 2.3E-17 7.7E-22 172.0 19.1 210 82-341 84-311 (474)
69 3mkr_A Coatomer subunit epsilo 99.7 2.3E-16 8E-21 154.0 24.7 241 79-389 12-254 (291)
70 3qky_A Outer membrane assembly 99.7 2.9E-16 9.9E-21 148.5 20.8 206 104-341 11-251 (261)
71 2vq2_A PILW, putative fimbrial 99.7 2.6E-15 8.9E-20 135.6 25.3 219 57-325 3-222 (225)
72 3vtx_A MAMA; tetratricopeptide 99.7 3.5E-16 1.2E-20 139.4 19.1 169 60-310 3-171 (184)
73 2qfc_A PLCR protein; TPR, HTH, 99.7 1.4E-15 4.8E-20 147.1 24.3 194 104-361 71-270 (293)
74 4abn_A Tetratricopeptide repea 99.7 7.1E-16 2.4E-20 160.6 23.8 197 146-393 102-316 (474)
75 4b4t_Q 26S proteasome regulato 99.7 1.7E-15 5.9E-20 152.2 25.6 242 78-338 16-274 (434)
76 4i17_A Hypothetical protein; T 99.7 1.6E-15 5.6E-20 139.9 22.8 159 109-338 8-169 (228)
77 3gw4_A Uncharacterized protein 99.7 1E-15 3.4E-20 137.3 20.5 168 203-392 3-170 (203)
78 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.6E-15 5.4E-20 141.9 21.2 228 57-341 38-265 (275)
79 2xm6_A Protein corresponding t 99.7 3.3E-14 1.1E-18 147.3 33.1 266 62-392 75-390 (490)
80 3u3w_A Transcriptional activat 99.7 3.1E-15 1E-19 144.7 23.3 207 105-378 72-285 (293)
81 2ho1_A Type 4 fimbrial biogene 99.7 3.8E-15 1.3E-19 138.3 22.5 200 104-392 32-232 (252)
82 2xm6_A Protein corresponding t 99.7 2.8E-14 9.6E-19 147.8 30.5 267 63-394 112-428 (490)
83 4b4t_Q 26S proteasome regulato 99.7 8.7E-15 3E-19 147.0 25.4 225 111-362 7-250 (434)
84 3u3w_A Transcriptional activat 99.7 6.7E-15 2.3E-19 142.3 20.8 170 201-392 84-260 (293)
85 2qfc_A PLCR protein; TPR, HTH, 99.7 9.9E-15 3.4E-19 141.1 21.6 191 57-313 70-270 (293)
86 3qky_A Outer membrane assembly 99.6 2.6E-14 9E-19 135.0 21.3 215 146-391 15-254 (261)
87 3gw4_A Uncharacterized protein 99.6 2.1E-14 7.3E-19 128.5 19.7 189 119-333 3-198 (203)
88 2pzi_A Probable serine/threoni 99.6 2.3E-15 7.8E-20 164.0 15.5 206 78-367 403-608 (681)
89 3as5_A MAMA; tetratricopeptide 99.6 2.3E-14 7.9E-19 124.9 18.4 171 104-358 4-174 (186)
90 2ond_A Cleavage stimulation fa 99.6 9E-14 3.1E-18 135.5 23.0 222 83-358 33-271 (308)
91 3ro3_A PINS homolog, G-protein 99.6 9.8E-14 3.4E-18 117.8 19.5 143 196-360 13-161 (164)
92 4i17_A Hypothetical protein; T 99.6 1.7E-13 5.7E-18 126.3 21.9 151 197-385 12-169 (228)
93 3as5_A MAMA; tetratricopeptide 99.5 4.2E-13 1.4E-17 116.8 19.5 155 197-392 13-167 (186)
94 4ga2_A E3 SUMO-protein ligase 99.5 1.6E-14 5.6E-19 126.7 10.4 146 198-383 3-148 (150)
95 3ro3_A PINS homolog, G-protein 99.5 4.1E-13 1.4E-17 113.9 18.0 143 227-392 10-152 (164)
96 3e4b_A ALGK; tetratricopeptide 99.5 8.8E-13 3E-17 136.4 21.9 136 206-393 231-382 (452)
97 2ond_A Cleavage stimulation fa 99.5 8.1E-13 2.8E-17 128.7 20.1 190 82-311 80-272 (308)
98 3urz_A Uncharacterized protein 99.5 1E-12 3.5E-17 121.0 19.1 182 108-358 4-187 (208)
99 3qou_A Protein YBBN; thioredox 99.5 1.2E-12 4.1E-17 127.0 20.3 167 106-356 115-283 (287)
100 3urz_A Uncharacterized protein 99.5 7.4E-13 2.5E-17 121.9 17.8 155 198-392 10-180 (208)
101 4ga2_A E3 SUMO-protein ligase 99.5 1.2E-13 4.1E-18 121.2 11.0 147 113-337 2-149 (150)
102 2yhc_A BAMD, UPF0169 lipoprote 99.5 1.3E-12 4.4E-17 121.4 17.1 175 108-309 4-213 (225)
103 2r5s_A Uncharacterized protein 99.4 2.3E-13 7.8E-18 121.6 9.6 170 105-309 3-173 (176)
104 2pzi_A Probable serine/threoni 99.4 4.7E-13 1.6E-17 145.7 13.0 154 197-392 438-599 (681)
105 3e4b_A ALGK; tetratricopeptide 99.4 1.8E-12 6E-17 134.1 16.6 78 79-173 16-101 (452)
106 3rjv_A Putative SEL1 repeat pr 99.4 9.8E-12 3.4E-16 115.0 18.7 174 84-309 4-197 (212)
107 4gcn_A Protein STI-1; structur 99.4 4E-12 1.4E-16 108.4 14.3 103 229-358 11-113 (127)
108 3qou_A Protein YBBN; thioredox 99.4 3.1E-12 1E-16 124.1 15.2 167 63-309 118-284 (287)
109 2ooe_A Cleavage stimulation fa 99.4 1.4E-11 4.8E-16 128.7 20.8 223 83-359 255-494 (530)
110 2vsy_A XCC0866; transferase, g 99.4 2.8E-12 9.5E-17 135.4 15.2 127 197-357 28-157 (568)
111 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.6E-11 5.5E-16 114.0 18.6 183 147-356 5-212 (225)
112 4f3v_A ESX-1 secretion system 99.4 2.7E-12 9.3E-17 125.8 14.0 225 60-357 5-237 (282)
113 1wao_1 Serine/threonine protei 99.4 1.6E-13 5.3E-18 143.5 5.2 183 104-360 2-200 (477)
114 2vsy_A XCC0866; transferase, g 99.4 6.4E-12 2.2E-16 132.6 16.8 158 121-329 2-169 (568)
115 2fo7_A Synthetic consensus TPR 99.4 2.3E-11 7.7E-16 99.7 16.4 128 197-358 6-133 (136)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.1E-11 3.7E-16 112.3 15.2 133 197-358 11-151 (213)
117 2r5s_A Uncharacterized protein 99.4 1.4E-11 4.8E-16 109.9 15.3 162 149-357 9-173 (176)
118 2ooe_A Cleavage stimulation fa 99.3 7.4E-10 2.5E-14 115.6 29.4 237 78-357 190-454 (530)
119 4gcn_A Protein STI-1; structur 99.3 3.7E-11 1.3E-15 102.3 15.9 110 198-326 14-123 (127)
120 4gco_A Protein STI-1; structur 99.3 3E-11 1E-15 103.0 14.6 107 197-331 18-124 (126)
121 1a17_A Serine/threonine protei 99.3 1.1E-10 3.8E-15 100.5 18.3 133 197-361 18-150 (166)
122 3gyz_A Chaperone protein IPGC; 99.3 3.7E-12 1.3E-16 113.1 9.0 109 215-357 25-133 (151)
123 1p5q_A FKBP52, FK506-binding p 99.3 4.6E-12 1.6E-16 126.0 9.5 160 204-390 125-285 (336)
124 1p5q_A FKBP52, FK506-binding p 99.3 6.3E-11 2.1E-15 117.7 17.6 129 197-358 152-295 (336)
125 4gco_A Protein STI-1; structur 99.3 3.1E-11 1.1E-15 102.9 13.1 105 226-368 13-117 (126)
126 3rjv_A Putative SEL1 repeat pr 99.3 8E-11 2.7E-15 108.8 16.4 177 125-357 3-197 (212)
127 1xi4_A Clathrin heavy chain; a 99.3 6.7E-10 2.3E-14 127.5 27.2 252 79-393 998-1304(1630)
128 3gyz_A Chaperone protein IPGC; 99.3 8.9E-11 3E-15 104.1 15.8 94 197-310 41-134 (151)
129 2fo7_A Synthetic consensus TPR 99.3 1.8E-10 6.1E-15 94.3 16.2 131 109-309 2-132 (136)
130 1wao_1 Serine/threonine protei 99.3 6.5E-12 2.2E-16 131.2 9.4 135 199-367 13-161 (477)
131 2hr2_A Hypothetical protein; a 99.3 1.1E-10 3.7E-15 105.0 16.0 117 227-358 12-132 (159)
132 1a17_A Serine/threonine protei 99.3 2.3E-10 7.7E-15 98.5 17.5 140 105-312 10-149 (166)
133 2vgx_A Chaperone SYCD; alterna 99.2 2.2E-11 7.6E-16 106.6 10.2 113 212-358 7-119 (148)
134 2e2e_A Formate-dependent nitri 99.2 6.9E-11 2.3E-15 104.5 13.5 122 203-358 21-145 (177)
135 2vyi_A SGTA protein; chaperone 99.2 3.6E-10 1.2E-14 92.5 15.4 114 197-338 17-130 (131)
136 2lni_A Stress-induced-phosphop 99.2 2.6E-10 9E-15 94.2 14.6 114 196-337 20-133 (133)
137 2fbn_A 70 kDa peptidylprolyl i 99.2 4.6E-11 1.6E-15 108.2 9.3 161 202-388 14-175 (198)
138 3upv_A Heat shock protein STI1 99.2 9.9E-10 3.4E-14 91.6 16.5 114 197-332 9-122 (126)
139 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.7E-10 9.2E-15 103.0 13.3 130 107-255 5-150 (213)
140 2fbn_A 70 kDa peptidylprolyl i 99.2 5.8E-10 2E-14 100.8 15.4 116 198-341 44-175 (198)
141 1na0_A Designed protein CTPR3; 99.2 1.1E-09 3.9E-14 88.7 15.6 112 197-336 14-125 (125)
142 2vgx_A Chaperone SYCD; alterna 99.1 1.1E-09 3.8E-14 95.7 16.0 101 197-322 26-126 (148)
143 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 5.5E-11 1.9E-15 123.2 9.0 161 204-391 246-407 (457)
144 1xi4_A Clathrin heavy chain; a 99.1 3.8E-09 1.3E-13 121.3 24.3 216 109-396 1106-1343(1630)
145 2xcb_A PCRH, regulatory protei 99.1 1.1E-09 3.7E-14 94.1 15.4 103 197-324 23-125 (142)
146 3sz7_A HSC70 cochaperone (SGT) 99.1 1.6E-09 5.4E-14 95.0 16.6 99 197-320 16-114 (164)
147 2xcb_A PCRH, regulatory protei 99.1 3.1E-10 1.1E-14 97.5 11.7 112 213-358 5-116 (142)
148 2c2l_A CHIP, carboxy terminus 99.1 3.8E-10 1.3E-14 109.0 13.5 180 60-255 2-199 (281)
149 3upv_A Heat shock protein STI1 99.1 6.6E-10 2.3E-14 92.7 13.0 98 227-358 5-102 (126)
150 2lni_A Stress-induced-phosphop 99.1 1.1E-09 3.7E-14 90.5 13.3 118 225-383 15-132 (133)
151 3sz7_A HSC70 cochaperone (SGT) 99.1 8.2E-10 2.8E-14 96.8 13.1 99 226-358 11-109 (164)
152 3rkv_A Putative peptidylprolyl 99.1 1.3E-09 4.3E-14 95.4 14.1 116 198-341 17-151 (162)
153 2c2l_A CHIP, carboxy terminus 99.1 2.5E-09 8.5E-14 103.2 17.4 198 106-358 2-200 (281)
154 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 9.1E-10 3.1E-14 114.1 15.1 129 197-358 273-416 (457)
155 3q49_B STIP1 homology and U bo 99.1 5.6E-09 1.9E-13 87.4 17.1 110 197-326 14-123 (137)
156 2xev_A YBGF; tetratricopeptide 99.1 4E-09 1.4E-13 87.4 15.5 113 198-332 8-123 (129)
157 2vyi_A SGTA protein; chaperone 99.1 2.9E-09 1E-13 86.9 14.3 118 227-385 13-130 (131)
158 3rkv_A Putative peptidylprolyl 99.1 2.5E-09 8.5E-14 93.5 14.7 114 228-357 13-126 (162)
159 1elr_A TPR2A-domain of HOP; HO 99.1 1E-08 3.5E-13 83.8 17.1 119 197-337 9-127 (131)
160 2xev_A YBGF; tetratricopeptide 99.0 4.1E-09 1.4E-13 87.4 14.5 103 228-358 4-106 (129)
161 1elr_A TPR2A-domain of HOP; HO 99.0 3E-09 1E-13 87.1 13.6 104 227-357 5-108 (131)
162 3q49_B STIP1 homology and U bo 99.0 6.1E-09 2.1E-13 87.2 15.7 101 225-359 8-108 (137)
163 1na0_A Designed protein CTPR3; 99.0 5.7E-09 1.9E-13 84.5 14.9 115 227-382 10-124 (125)
164 1b89_A Protein (clathrin heavy 99.0 2.6E-10 9E-15 118.1 7.3 232 78-395 15-269 (449)
165 2e2e_A Formate-dependent nitri 99.0 6E-09 2.1E-13 91.9 14.9 133 159-328 23-158 (177)
166 1hxi_A PEX5, peroxisome target 99.0 1.4E-09 4.9E-14 91.7 10.3 93 198-310 23-115 (121)
167 1elw_A TPR1-domain of HOP; HOP 99.0 8.1E-09 2.8E-13 82.9 13.9 107 198-332 10-116 (118)
168 2hr2_A Hypothetical protein; a 99.0 6E-09 2E-13 93.6 14.3 114 106-258 9-134 (159)
169 3k9i_A BH0479 protein; putativ 99.0 1.5E-09 5.1E-14 90.1 9.6 93 204-321 2-97 (117)
170 1hxi_A PEX5, peroxisome target 99.0 4E-09 1.4E-13 88.9 11.7 95 229-357 20-114 (121)
171 4f3v_A ESX-1 secretion system 99.0 1.9E-08 6.5E-13 98.5 17.7 236 107-425 6-251 (282)
172 2dba_A Smooth muscle cell asso 98.9 1.2E-08 4E-13 85.9 13.6 104 197-325 33-139 (148)
173 1elw_A TPR1-domain of HOP; HOP 98.9 1.2E-08 4E-13 81.9 12.3 97 227-357 5-101 (118)
174 1ihg_A Cyclophilin 40; ppiase 98.9 1.4E-08 4.9E-13 102.5 15.7 138 228-390 225-362 (370)
175 1ihg_A Cyclophilin 40; ppiase 98.9 9.1E-09 3.1E-13 103.9 13.9 116 198-341 229-360 (370)
176 3k9i_A BH0479 protein; putativ 98.9 2.5E-09 8.7E-14 88.7 8.0 90 238-358 2-91 (117)
177 2dba_A Smooth muscle cell asso 98.9 1.2E-08 4.2E-13 85.7 12.4 102 225-357 27-128 (148)
178 2if4_A ATFKBP42; FKBP-like, al 98.9 2.2E-09 7.4E-14 106.8 8.4 154 104-310 175-329 (338)
179 2kck_A TPR repeat; tetratricop 98.9 4E-09 1.4E-13 84.1 8.3 97 227-357 7-106 (112)
180 3dra_A Protein farnesyltransfe 98.9 2.8E-07 9.5E-12 91.1 23.4 236 63-356 33-286 (306)
181 2if4_A ATFKBP42; FKBP-like, al 98.8 4E-09 1.4E-13 104.8 8.1 127 198-358 185-329 (338)
182 2kck_A TPR repeat; tetratricop 98.8 2.2E-08 7.5E-13 79.7 10.1 94 198-309 12-106 (112)
183 1b89_A Protein (clathrin heavy 98.7 8.9E-09 3E-13 106.7 6.3 167 114-355 9-175 (449)
184 3mv2_B Coatomer subunit epsilo 98.7 5.8E-07 2E-11 89.0 17.9 201 85-324 85-292 (310)
185 1na3_A Designed protein CTPR2; 98.7 1.5E-07 5.1E-12 72.8 10.7 82 227-336 10-91 (91)
186 3dra_A Protein farnesyltransfe 98.7 3.6E-06 1.2E-10 83.1 22.9 222 122-392 47-281 (306)
187 2l6j_A TPR repeat-containing p 98.7 7.9E-08 2.7E-12 77.1 9.0 90 227-341 5-97 (111)
188 1zu2_A Mitochondrial import re 98.6 3.6E-08 1.2E-12 88.5 7.0 87 204-310 14-121 (158)
189 2kat_A Uncharacterized protein 98.6 1.4E-07 4.9E-12 77.3 10.1 84 209-312 2-85 (115)
190 2l6j_A TPR repeat-containing p 98.6 1E-07 3.4E-12 76.5 6.8 93 280-390 4-99 (111)
191 1klx_A Cysteine rich protein B 98.6 4.3E-07 1.5E-11 78.4 11.0 111 205-357 8-126 (138)
192 1na3_A Designed protein CTPR2; 98.5 6.1E-07 2.1E-11 69.3 10.8 82 280-382 9-90 (91)
193 2kat_A Uncharacterized protein 98.5 2E-07 6.8E-12 76.4 8.3 83 243-359 2-84 (115)
194 1zu2_A Mitochondrial import re 98.5 2E-07 6.9E-12 83.6 8.7 88 237-358 13-121 (158)
195 3mv2_B Coatomer subunit epsilo 98.4 9.7E-06 3.3E-10 80.2 18.6 176 148-369 102-290 (310)
196 3ma5_A Tetratricopeptide repea 98.3 1.9E-06 6.4E-11 69.6 8.4 65 281-359 8-72 (100)
197 3ma5_A Tetratricopeptide repea 98.3 7.3E-06 2.5E-10 66.0 11.2 61 196-256 11-71 (100)
198 2kc7_A BFR218_protein; tetratr 98.2 7.1E-06 2.4E-10 64.8 10.3 68 230-322 4-72 (99)
199 3q7a_A Farnesyltransferase alp 98.2 0.00012 4.3E-09 73.4 20.4 242 59-354 51-328 (349)
200 4e6h_A MRNA 3'-END-processing 98.1 0.00011 3.7E-09 80.2 20.2 234 82-358 325-571 (679)
201 1klx_A Cysteine rich protein B 98.1 2.3E-05 7.9E-10 67.3 11.4 88 198-309 31-126 (138)
202 1dce_A Protein (RAB geranylger 98.1 4.1E-05 1.4E-09 81.6 15.4 176 79-298 42-244 (567)
203 3q7a_A Farnesyltransferase alp 98.1 0.00042 1.4E-08 69.6 21.7 189 106-338 52-258 (349)
204 2v5f_A Prolyl 4-hydroxylase su 98.1 4.7E-05 1.6E-09 62.2 12.2 81 228-329 7-87 (104)
205 3dss_A Geranylgeranyl transfer 98.1 0.00047 1.6E-08 68.7 21.7 152 80-255 43-222 (331)
206 1dce_A Protein (RAB geranylger 98.0 4.7E-05 1.6E-09 81.2 13.9 178 119-340 39-244 (567)
207 2kc7_A BFR218_protein; tetratr 97.9 3E-05 1E-09 61.1 8.3 60 284-357 4-64 (99)
208 3u64_A Protein TP_0956; tetrat 97.9 0.00025 8.6E-09 69.4 14.7 83 208-309 179-269 (301)
209 4e6h_A MRNA 3'-END-processing 97.8 0.00034 1.2E-08 76.2 16.9 206 78-324 355-580 (679)
210 3dss_A Geranylgeranyl transfer 97.7 0.0023 7.7E-08 63.8 20.0 156 118-309 39-222 (331)
211 4g26_A Pentatricopeptide repea 97.7 0.0013 4.3E-08 69.0 18.8 191 110-336 28-224 (501)
212 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00021 7E-09 58.3 9.2 80 283-376 8-87 (104)
213 3bee_A Putative YFRE protein; 97.5 0.0011 3.9E-08 53.3 11.3 84 223-331 3-89 (93)
214 4g26_A Pentatricopeptide repea 97.4 0.0032 1.1E-07 65.9 16.1 156 79-255 39-204 (501)
215 3txn_A 26S proteasome regulato 97.3 0.019 6.6E-07 58.4 20.9 184 109-311 20-212 (394)
216 3u64_A Protein TP_0956; tetrat 97.3 0.0016 5.4E-08 63.7 12.0 62 194-255 201-269 (301)
217 3ly7_A Transcriptional activat 97.3 0.01 3.6E-07 59.8 17.5 133 196-357 200-339 (372)
218 3ly7_A Transcriptional activat 97.2 0.0091 3.1E-07 60.3 16.7 136 109-255 199-339 (372)
219 2uy1_A Cleavage stimulation fa 97.1 0.038 1.3E-06 57.4 21.0 225 82-366 195-422 (493)
220 3ffl_A Anaphase-promoting comp 97.1 0.0025 8.4E-08 57.2 9.8 98 233-341 27-141 (167)
221 3txn_A 26S proteasome regulato 97.0 0.1 3.4E-06 53.1 21.9 180 148-358 21-211 (394)
222 3bee_A Putative YFRE protein; 96.9 0.001 3.6E-08 53.5 5.4 72 60-140 4-75 (93)
223 1pc2_A Mitochondria fission pr 96.8 0.0068 2.3E-07 53.6 10.2 93 207-322 13-108 (152)
224 4b4t_P 26S proteasome regulato 96.3 0.5 1.7E-05 48.4 22.1 214 79-312 29-250 (445)
225 1pc2_A Mitochondria fission pr 96.2 0.011 3.7E-07 52.3 7.6 73 61-141 31-104 (152)
226 3mkq_A Coatomer beta'-subunit; 95.9 0.075 2.6E-06 57.0 13.6 117 283-425 684-809 (814)
227 2uy1_A Cleavage stimulation fa 95.8 0.41 1.4E-05 49.5 18.4 215 77-357 5-242 (493)
228 3mkq_A Coatomer beta'-subunit; 95.8 0.18 6.1E-06 54.0 16.1 163 112-341 633-802 (814)
229 3ffl_A Anaphase-promoting comp 95.7 0.19 6.5E-06 44.9 13.3 103 283-392 23-145 (167)
230 4b4t_R RPN7, 26S proteasome re 95.4 0.06 2.1E-06 55.0 10.3 109 106-221 129-237 (429)
231 4b4t_R RPN7, 26S proteasome re 91.1 1.1 3.9E-05 45.4 10.9 105 227-357 132-237 (429)
232 4a5x_A MITD1, MIT domain-conta 90.7 2.1 7.2E-05 33.8 9.7 61 272-332 8-69 (86)
233 1nzn_A CGI-135 protein, fissio 90.2 1.2 4.1E-05 37.9 8.4 72 62-141 35-107 (126)
234 4b4t_P 26S proteasome regulato 89.6 3.6 0.00012 42.0 13.2 110 106-220 135-246 (445)
235 2ff4_A Probable regulatory pro 89.5 3 0.0001 41.7 12.3 128 48-180 98-239 (388)
236 1nzn_A CGI-135 protein, fissio 88.9 1.8 6.1E-05 36.8 8.6 88 205-310 14-104 (126)
237 3spa_A Mtrpol, DNA-directed RN 88.7 3.9 0.00013 46.4 13.4 109 102-221 121-230 (1134)
238 1ya0_A SMG-7 transcript varian 87.9 0.79 2.7E-05 47.9 6.8 62 282-357 154-215 (497)
239 3o48_A Mitochondria fission 1 87.7 2.1 7.1E-05 36.8 8.2 75 57-141 36-111 (134)
240 2ff4_A Probable regulatory pro 87.4 8 0.00027 38.5 13.8 96 203-318 126-243 (388)
241 3mkq_B Coatomer subunit alpha; 87.2 3.3 0.00011 37.1 9.7 124 79-252 18-141 (177)
242 2br9_A 14-3-3E, 14-3-3 protein 85.8 3 0.0001 39.1 9.0 63 297-361 147-210 (234)
243 4h7y_A Dual specificity protei 85.7 12 0.00042 32.8 12.1 107 224-357 11-123 (161)
244 1y8m_A FIS1; mitochondria, unk 85.4 1.9 6.6E-05 37.4 6.8 74 60-141 37-110 (144)
245 4h7y_A Dual specificity protei 84.8 15 0.0005 32.4 12.2 53 203-255 71-123 (161)
246 1ya0_A SMG-7 transcript varian 84.5 3.4 0.00012 43.0 9.6 61 228-308 154-214 (497)
247 3mkq_B Coatomer subunit alpha; 83.4 5.2 0.00018 35.8 9.1 48 203-255 16-63 (177)
248 2br9_A 14-3-3E, 14-3-3 protein 83.2 2.4 8.1E-05 39.8 7.0 56 83-138 147-203 (234)
249 2cpt_A SKD1 protein, vacuolar 82.6 12 0.0004 31.2 10.3 52 282-333 20-73 (117)
250 2npm_A 14-3-3 domain containin 82.4 3.5 0.00012 39.3 7.8 55 83-138 173-228 (260)
251 3ubw_A 14-3-3E, 14-3-3 protein 82.1 5.3 0.00018 38.0 9.0 63 297-361 173-236 (261)
252 4gns_B Protein CSD3, chitin bi 81.7 2.3 7.8E-05 46.6 7.1 61 108-172 337-397 (754)
253 3spa_A Mtrpol, DNA-directed RN 81.2 8.7 0.0003 43.6 11.6 105 57-172 122-227 (1134)
254 1o9d_A 14-3-3-like protein C; 81.2 5 0.00017 38.2 8.5 65 297-363 152-217 (260)
255 3uzd_A 14-3-3 protein gamma; s 81.1 6.1 0.00021 37.3 9.0 62 297-360 148-210 (248)
256 1o9d_A 14-3-3-like protein C; 80.8 3.3 0.00011 39.5 7.0 56 83-138 152-208 (260)
257 3uzd_A 14-3-3 protein gamma; s 79.7 3.7 0.00013 38.8 7.0 57 82-138 147-204 (248)
258 3iqu_A 14-3-3 protein sigma; s 79.3 4 0.00014 38.3 7.0 57 82-138 149-206 (236)
259 3ubw_A 14-3-3E, 14-3-3 protein 79.2 3.9 0.00013 38.9 7.0 56 83-138 173-229 (261)
260 2npm_A 14-3-3 domain containin 78.0 5.5 0.00019 38.0 7.6 61 297-360 173-234 (260)
261 2o8p_A 14-3-3 domain containin 77.1 3 0.0001 38.9 5.4 59 80-138 139-198 (227)
262 2wpv_A GET4, UPF0363 protein Y 76.7 29 0.001 33.7 12.7 26 225-250 133-158 (312)
263 4b4t_S RPN3, 26S proteasome re 75.6 12 0.00041 39.2 10.0 135 78-220 148-298 (523)
264 3iqu_A 14-3-3 protein sigma; s 75.5 12 0.00039 35.2 9.0 61 297-359 150-211 (236)
265 2w2u_A Hypothetical P60 katani 73.7 7.9 0.00027 30.2 6.2 44 283-326 22-66 (83)
266 4gns_B Protein CSD3, chitin bi 72.1 15 0.00051 40.2 10.2 54 233-306 344-397 (754)
267 4fhn_B Nucleoporin NUP120; pro 71.8 38 0.0013 38.5 14.0 143 197-359 847-1052(1139)
268 3o48_A Mitochondria fission 1 69.8 14 0.00049 31.5 7.4 68 279-357 39-107 (134)
269 3efz_A 14-3-3 protein; 14-3-3, 68.1 6.6 0.00022 37.5 5.5 56 82-137 168-226 (268)
270 2v6x_A Vacuolar protein sortin 67.3 38 0.0013 26.0 9.0 51 282-332 15-66 (85)
271 2o8p_A 14-3-3 domain containin 66.4 83 0.0028 29.1 18.5 139 113-256 11-198 (227)
272 4gq4_A Menin; tumor suppressor 65.2 27 0.00093 35.5 9.4 68 282-358 264-333 (489)
273 1y8m_A FIS1; mitochondria, unk 65.1 19 0.00063 31.2 7.3 68 279-357 38-106 (144)
274 1wfd_A Hypothetical protein 15 64.9 49 0.0017 26.0 9.6 50 283-332 18-68 (93)
275 2xze_A STAM-binding protein; h 64.7 21 0.00072 30.7 7.7 43 321-369 39-81 (146)
276 2rpa_A Katanin P60 ATPase-cont 64.0 11 0.00039 29.1 5.2 35 283-317 15-49 (78)
277 2v6y_A AAA family ATPase, P60 63.2 13 0.00046 28.7 5.6 41 285-325 16-57 (83)
278 3efz_A 14-3-3 protein; 14-3-3, 62.5 14 0.00049 35.2 6.6 55 297-357 169-226 (268)
279 4b4t_O 26S proteasome regulato 61.7 1.3E+02 0.0044 29.8 14.1 101 235-341 85-188 (393)
280 3re2_A Predicted protein; meni 59.6 44 0.0015 33.4 9.6 57 282-341 257-315 (472)
281 2wpv_A GET4, UPF0363 protein Y 58.4 1.3E+02 0.0046 28.9 17.8 133 78-217 25-159 (312)
282 1zbp_A Hypothetical protein VP 57.3 1.2E+02 0.0039 29.0 12.0 56 78-141 9-64 (273)
283 2w2u_A Hypothetical P60 katani 56.9 18 0.00063 28.0 5.3 30 111-140 22-51 (83)
284 2v6y_A AAA family ATPase, P60 55.1 21 0.0007 27.7 5.3 30 111-140 14-43 (83)
285 4a5x_A MITD1, MIT domain-conta 53.0 26 0.0009 27.3 5.7 34 107-140 15-48 (86)
286 2crb_A Nuclear receptor bindin 52.8 29 0.00098 27.8 5.7 37 104-140 11-47 (97)
287 1wy6_A Hypothetical protein ST 52.1 1.2E+02 0.0041 26.4 10.2 53 203-255 102-154 (172)
288 3u84_A Menin; MLL, JUND, ledgf 52.0 66 0.0023 32.7 9.6 56 282-341 279-337 (550)
289 4ady_A RPN2, 26S proteasome re 50.8 3.1E+02 0.011 30.8 16.9 208 57-307 371-587 (963)
290 2crb_A Nuclear receptor bindin 50.5 16 0.00056 29.2 4.0 30 232-261 21-50 (97)
291 2v6x_A Vacuolar protein sortin 49.2 29 0.00098 26.7 5.3 34 107-140 12-45 (85)
292 1wfd_A Hypothetical protein 15 47.0 35 0.0012 26.9 5.6 34 107-140 14-47 (93)
293 4fhn_B Nucleoporin NUP120; pro 46.9 27 0.00094 39.7 6.9 99 283-390 845-959 (1139)
294 2cpt_A SKD1 protein, vacuolar 46.0 29 0.00099 28.7 5.2 33 108-140 18-50 (117)
295 3lpz_A GET4 (YOR164C homolog); 44.7 2.3E+02 0.008 27.6 22.6 223 109-380 36-293 (336)
296 3esl_A Checkpoint serine/threo 43.5 1.4E+02 0.0047 27.2 9.7 64 227-309 81-144 (202)
297 4b4t_S RPN3, 26S proteasome re 39.4 65 0.0022 33.6 7.7 98 61-164 229-329 (523)
298 1zb1_A BRO1 protein; AIP1, BRO 38.4 3E+02 0.01 27.0 13.3 130 282-411 125-288 (392)
299 3re2_A Predicted protein; meni 35.7 1.3E+02 0.0046 30.0 8.7 50 84-136 275-324 (472)
300 3esl_A Checkpoint serine/threo 35.4 81 0.0028 28.7 6.8 51 205-255 92-144 (202)
301 2wm9_A Dedicator of cytokinesi 35.0 2.5E+02 0.0087 28.1 11.2 85 229-313 14-121 (428)
302 4a1g_A Mitotic checkpoint seri 34.7 59 0.002 28.2 5.5 48 208-255 81-130 (152)
303 2xze_A STAM-binding protein; h 34.4 48 0.0016 28.4 4.9 40 282-322 42-81 (146)
304 3ax2_A Mitochondrial import re 32.4 29 0.00099 26.4 2.7 27 284-310 21-47 (73)
305 2wvi_A Mitotic checkpoint seri 31.1 71 0.0024 28.0 5.5 47 209-255 77-125 (164)
306 1om2_A Protein (mitochondrial 31.0 47 0.0016 26.6 3.9 27 284-310 24-50 (95)
307 2wb7_A PT26-6P; extra chromoso 31.0 63 0.0021 33.5 5.8 68 84-176 450-517 (526)
308 3ax2_A Mitochondrial import re 30.4 43 0.0015 25.4 3.4 29 112-140 21-49 (73)
309 4aez_C MAD3, mitotic spindle c 29.3 74 0.0025 29.4 5.5 48 208-255 130-179 (223)
310 3t5v_B Nuclear mRNA export pro 28.9 1.4E+02 0.0049 30.3 8.2 72 230-311 180-252 (455)
311 4gq4_A Menin; tumor suppressor 28.5 1.5E+02 0.0051 30.2 7.8 48 84-134 282-329 (489)
312 2xs1_A Programmed cell death 6 27.0 6E+02 0.02 27.1 13.8 79 281-359 128-238 (704)
313 3myv_A SUSD superfamily protei 26.5 1.3E+02 0.0044 30.2 7.3 56 82-137 164-219 (454)
314 3t5x_A PCI domain-containing p 25.6 2E+02 0.0069 25.6 7.8 59 106-164 12-71 (203)
315 3u84_A Menin; MLL, JUND, ledgf 25.6 2.1E+02 0.007 29.2 8.2 50 84-136 297-346 (550)
316 2wb7_A PT26-6P; extra chromoso 25.0 1.4E+02 0.005 30.8 7.2 42 297-338 449-490 (526)
317 3mcx_A SUSD superfamily protei 24.9 1.5E+02 0.0053 29.7 7.6 56 82-137 176-231 (477)
318 2qx5_A Nucleoporin NIC96; mRNA 24.5 2E+02 0.0069 30.7 8.7 24 111-134 446-469 (661)
319 2rpa_A Katanin P60 ATPase-cont 23.6 84 0.0029 24.1 4.0 31 111-141 15-45 (78)
320 3kez_A Putative sugar binding 23.4 1.5E+02 0.0051 29.8 7.1 36 102-137 190-225 (461)
321 3iqc_A FLIS, flagellar protein 23.2 2.1E+02 0.0071 23.9 6.8 50 285-334 41-91 (131)
322 3rau_A Tyrosine-protein phosph 23.2 5.2E+02 0.018 25.1 11.3 80 281-360 118-225 (363)
323 1om2_A Protein (mitochondrial 22.3 75 0.0026 25.4 3.6 29 112-140 24-52 (95)
324 3t5x_A PCI domain-containing p 21.8 1.1E+02 0.0038 27.4 5.2 32 280-311 14-45 (203)
325 3c3r_A Programmed cell death 6 21.7 3.9E+02 0.013 26.1 9.7 147 106-261 140-310 (380)
326 2ijq_A Hypothetical protein; s 20.9 3.4E+02 0.012 23.5 8.0 60 197-256 37-105 (161)
327 4gq2_M Nucleoporin NUP120; bet 20.2 1.6E+02 0.0054 32.8 7.0 71 282-358 842-927 (950)
No 1
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=3.6e-25 Score=221.18 Aligned_cols=301 Identities=17% Similarity=0.152 Sum_probs=242.4
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
..+..+..+...|..+. ..|+|++|+.+|++++.+. ..+....+.++.++|.+|..+|+|++|++.|++++.
T Consensus 43 ~~~~~~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 43 GGSSMCLELALEGERLC----NAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp -CHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH----HhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34788888999999874 3689999999999999973 223445788999999999999999999999999998
Q ss_pred hhhhhhh--hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC-------
Q 013549 137 FKNSILG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN------- 207 (441)
Q Consensus 137 i~~~~lg--~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~------- 207 (441)
+.+..-. ....++.+++.+|..+|++++|..++++++++....... ..........|.++..+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR------LSEGRALYNLGNVYHAKGKHLGQRNP 188 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHHHHcCcccccccc
Confidence 8755311 124578889999999999999999999999988765421 1112333456888889999
Q ss_pred ----------HHHHHHHHHhhhhc---cC---CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549 208 ----------LESAESFFKGLQEE---EG---CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 271 (441)
Q Consensus 208 ----------y~eAe~l~~~aL~~---~~---~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~ 271 (441)
|++|+.+|++++.. .. ....+..++|.+|..+|+|++|+.+|++++++......
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 258 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD---------- 258 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC----------
Confidence 99999999999881 11 12345567899999999999999999999999643211
Q ss_pred ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549 272 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 351 (441)
Q Consensus 272 ~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly 351 (441)
......++.++|.+|..+|+|++|+.+|++++.+..+. .+++..+.++.++|.+|..+|++++| ..+|
T Consensus 259 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~ 326 (411)
T 4a1s_A 259 ----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTA------IEYH 326 (411)
T ss_dssp ----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred ----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHH------HHHH
Confidence 11134567899999999999999999999999999986 56677889999999999999999987 8999
Q ss_pred HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
++++++.... .+.+.....+.+++.++..+|+|++|+....+
T Consensus 327 ~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 327 NRHLAIAQEL-GDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHC-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999998643 34455677888999999999999999887644
No 2
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.3e-24 Score=214.76 Aligned_cols=297 Identities=16% Similarity=0.116 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
..+..+...|..+. ..|+|++|+.+|++++.+. ..+.+..+.++.++|.+|..+|+|++|++.|++++.+.+
T Consensus 7 ~~~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 7 ASCLELALEGERLC----KSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34566777888873 3689999999999999973 234455689999999999999999999999999998876
Q ss_pred hhhhh---hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC---------
Q 013549 140 SILGV---RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN--------- 207 (441)
Q Consensus 140 ~~lg~---~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~--------- 207 (441)
.. +. ...++.+++.+|..+|++++|..++++++++....... ..........|.++..+|+
T Consensus 79 ~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 151 (406)
T 3sf4_A 79 TI-GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK------VGEARALYNLGNVYHAKGKSFGCPGPQD 151 (406)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHHHTCC------
T ss_pred hc-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHcCCcccccccch
Confidence 53 22 24578889999999999999999999999998765521 1112333456888889999
Q ss_pred -----------HHHHHHHHHhhhhc------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccc
Q 013549 208 -----------LESAESFFKGLQEE------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS 270 (441)
Q Consensus 208 -----------y~eAe~l~~~aL~~------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~ 270 (441)
|++|+.+|++++.. .+....+..++|.++..+|+|++|+.+|++++++......
T Consensus 152 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------- 222 (406)
T 3sf4_A 152 VGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------- 222 (406)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------
Confidence 99999999999881 1112334567899999999999999999999999643211
Q ss_pred cccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHH
Q 013549 271 CNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGL 350 (441)
Q Consensus 271 ~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~l 350 (441)
+ .....++.++|.+|..+|+|++|+.+|++++.+..+. .+++..+.++.++|.+|..+|++++| ...
T Consensus 223 ----~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~ 289 (406)
T 3sf4_A 223 ----K-AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDY 289 (406)
T ss_dssp ----H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHH
T ss_pred ----c-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHH------HHH
Confidence 1 1134478899999999999999999999999999875 46778899999999999999999987 899
Q ss_pred HHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 351 YRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 351 y~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
|++++++.... .+++.....+.+++.++..+|+|++|+.....
T Consensus 290 ~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 290 HLKHLAIAQEL-NDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998653 34555677888999999999999999887644
No 3
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=4.8e-24 Score=203.23 Aligned_cols=295 Identities=16% Similarity=0.109 Sum_probs=234.3
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
...+...|..+. ..|+|++|+.+|++++.+. ..+.+..+.++.++|.+|..+|+|++|++.+++++.+.+..
T Consensus 5 ~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 5 CLELALEGERLC----KSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 345556666663 3689999999999999973 23455568999999999999999999999999999887653
Q ss_pred hhh--hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC------------
Q 013549 142 LGV--RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN------------ 207 (441)
Q Consensus 142 lg~--~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~------------ 207 (441)
-.. ...++..++.+|..+|++++|..++++++++....... ..........|.++..+|+
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK------VGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHHHTSSSSSCC----
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc------hHHHHHHHHHHHHHHHcCcccccchhhhhhh
Confidence 111 24577889999999999999999999999988765421 1112233456788889999
Q ss_pred --------HHHHHHHHHhhhhc---cC---CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 208 --------LESAESFFKGLQEE---EG---CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 208 --------y~eAe~l~~~aL~~---~~---~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
|++|..+|++++.. .. ....+..++|.++..+|+|++|+.+|++++++......
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 218 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------ 218 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------------
Confidence 99999999999871 11 12334567799999999999999999999999643211
Q ss_pred chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549 274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 353 (441)
Q Consensus 274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r 353 (441)
......++.++|.+|..+|+|++|+++|++++.+..+. .+++....++.++|.+|..+|++++| ...|++
T Consensus 219 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~ 288 (338)
T 3ro2_A 219 --KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDYHLK 288 (338)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHH------HHHHHH
Confidence 11134578899999999999999999999999999885 46778899999999999999999987 899999
Q ss_pred HHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549 354 ALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 354 AL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
++++.... .+.+.....+.+++.++..+|++++|+....
T Consensus 289 a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 289 HLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhc-CCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99998542 2345566677889999999999998887753
No 4
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=4.4e-24 Score=210.94 Aligned_cols=297 Identities=15% Similarity=0.106 Sum_probs=238.6
Q ss_pred CCCchH-HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 55 GLNSNP-VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 55 g~~h~~-~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
.|+.|. .+..+.++|..+. ..|+|++|+.++++++.+.... .++|..+.++.++|.+|..+|+|++|+..+++
T Consensus 39 ~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 112 (406)
T 3sf4_A 39 GTEDLKTLSAIYSQLGNAYF----YLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112 (406)
T ss_dssp CCSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444 5677888999884 3689999999999999987666 47889999999999999999999999999999
Q ss_pred HHHhhhhhhhh--hHHHHHHHHHHHHhcCC--------------------cchhHHHHHHHHHHHHhcCCCcchhhhhhH
Q 013549 134 VENFKNSILGV--RVAAMEALAGLYLQLGQ--------------------DDTSSVVADKCLQLCEKHKPENYKTYGAVN 191 (441)
Q Consensus 134 al~i~~~~lg~--~~~al~~La~l~~~~G~--------------------~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~ 191 (441)
++.+.+..-.. ...++.+++.+|..+|+ +++|..++++++.+....... ...
T Consensus 113 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~------~~~ 186 (406)
T 3sf4_A 113 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR------AAQ 186 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH------HHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc------HHH
Confidence 99988764221 23478889999999999 999999999999887765421 111
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549 192 SRANAVKGLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 265 (441)
Q Consensus 192 ~~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~ 265 (441)
.......|.++..+|+|++|+.+|++++.. .+.. ..+..++|.++..+|+|++|+.+|++++++......
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 262 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 262 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC----
Confidence 223345688888999999999999999982 1111 234567899999999999999999999999643211
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhH
Q 013549 266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALL 345 (441)
Q Consensus 266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~ 345 (441)
......++.++|.+|..+|+|++|+++|++++.+..+. .+++....++.++|.+|..+|++++|
T Consensus 263 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A---- 326 (406)
T 3sf4_A 263 ----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNHDQA---- 326 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH----
T ss_pred ----------chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCCHHHH----
Confidence 11134567899999999999999999999999999886 34788899999999999999999987
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHH
Q 013549 346 IQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 386 (441)
Q Consensus 346 ~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~ya 386 (441)
...|++++++.+.. .+.+.....+.+++.++...|+..
T Consensus 327 --~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 --MHFAEKHLEISREV-GDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp --HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHhhHhH
Confidence 89999999998754 344556677778899998888763
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=3.4e-24 Score=213.53 Aligned_cols=289 Identities=15% Similarity=0.107 Sum_probs=171.5
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQL 159 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~ 159 (441)
|++++|+.++++++.+ +|..+.++.++|.+|..+|+|++|++.|++++.+.+.. ..++.+++.++..+
T Consensus 47 ~~~~~a~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 47 RRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF----IDGYINLAAALVAA 114 (388)
T ss_dssp TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch----HHHHHHHHHHHHHc
Confidence 4555555555555542 23344455555555555555555555555555544332 12344455555555
Q ss_pred CCcchhHHHHHHHHHHHHhcCC------------Ccchhhhh----------hHhHHHHHHHHHHHHcCCHHHHHHHHHh
Q 013549 160 GQDDTSSVVADKCLQLCEKHKP------------ENYKTYGA----------VNSRANAVKGLVELAHGNLESAESFFKG 217 (441)
Q Consensus 160 G~~~~A~~l~~~~L~i~~~~~~------------~~~~~~~~----------l~~~a~al~gl~~~~qG~y~eAe~l~~~ 217 (441)
|++++|...+++++.+...... ..++++.. -...+....|.++..+|++++|+..|++
T Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555554432100000 00000000 0001112235555566666666666666
Q ss_pred hhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHH
Q 013549 218 LQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG 297 (441)
Q Consensus 218 aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~ 297 (441)
++...+....+..++|.++..+|+|++|+..|++++.+ . |+ ...++.++|.+|..+|+++
T Consensus 195 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~---------------p~--~~~~~~~l~~~~~~~g~~~ 254 (388)
T 1w3b_A 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---S---------------PN--HAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---C---------------TT--CHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C---------------cC--CHHHHHHHHHHHHHcCCHH
Confidence 66644445555556666666666666666666666665 1 11 1235678899999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHH
Q 013549 298 DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDI 377 (441)
Q Consensus 298 eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~ 377 (441)
+|++.|++++.+ +|....++.++|.+|..+|++++| +..|++++++. |++ ...+.+++.
T Consensus 255 ~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~----p~~---~~~~~~l~~ 313 (388)
T 1w3b_A 255 LAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEA------EDCYNTALRLC----PTH---ADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHC----TTC---HHHHHHHHH
T ss_pred HHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC----ccc---HHHHHHHHH
Confidence 999999998874 344445688899999999998887 88899998772 233 345678888
Q ss_pred HHHHhccHHHHHHHhhchh----hHHHHHHHHHHHHHhccChhHHHHh
Q 013549 378 VALARGGYAEALSVQQNRK----DEGERMKRWAEAAWRNRRVSLAEAL 421 (441)
Q Consensus 378 ~~~~~g~yaeal~~~~~r~----~eae~~~~~a~~~~~~~r~~~~~~l 421 (441)
++..+|++++|+....+-. ...+.+...+..+++.+++..|..+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999988763321 1256667788888888887766443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.7e-23 Score=208.46 Aligned_cols=290 Identities=17% Similarity=0.135 Sum_probs=197.7
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..|+|++|+..+++++... |+...++..+|.++..+|++++|+..+++++...+.. ..++..++.+|.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~----~~~~~~lg~~~~ 78 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYK 78 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHH
Confidence 3689999999999999743 4445678899999999999999999999999887543 347889999999
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCC------------CcchhhhhhHh----------HHHHHHHHHHHHcCCHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKP------------ENYKTYGAVNS----------RANAVKGLVELAHGNLESAESFF 215 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~------------~~~~~~~~l~~----------~a~al~gl~~~~qG~y~eAe~l~ 215 (441)
.+|++++|..++++++.+...... ..++++..... ......|.++..+|++++|+.+|
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999865211000 00000000000 01112344455566666666666
Q ss_pred HhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC
Q 013549 216 KGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN 295 (441)
Q Consensus 216 ~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~ 295 (441)
++++...+....+..++|.++..+|++++|+..|++++.+ .. + ...++.++|.++..+|+
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p---------------~--~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---DP---------------N--FLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CT---------------T--CHHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC---------------C--cHHHHHHHHHHHHHcCC
Confidence 6666654445555556666666666666666666666665 10 0 12346677777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccH
Q 013549 296 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRT 375 (441)
Q Consensus 296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl 375 (441)
|++|+..|++++.+ +|....++.++|.+|..+|++++| +..|++++++ .|+++ ....++
T Consensus 219 ~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~----~p~~~---~~~~~l 277 (388)
T 1w3b_A 219 FDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLA------IDTYRRAIEL----QPHFP---DAYCNL 277 (388)
T ss_dssp TTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHT----CSSCH---HHHHHH
T ss_pred HHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhh----CCCCH---HHHHHH
Confidence 77777777777765 355566778888999999988876 8888888775 23333 456788
Q ss_pred HHHHHHhccHHHHHHHhhchhh----HHHHHHHHHHHHHhccChhHHHH
Q 013549 376 DIVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEA 420 (441)
Q Consensus 376 ~~~~~~~g~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~~~~~ 420 (441)
+.++..+|++++|+.....-.. ..+.+...+..+.+.+++..+..
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999999999887643221 24566667777777777666544
No 7
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=4.1e-24 Score=203.47 Aligned_cols=282 Identities=16% Similarity=0.149 Sum_probs=210.8
Q ss_pred ccccCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHH
Q 013549 51 NRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEK 130 (441)
Q Consensus 51 ~~~~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~ 130 (441)
....|+++|..+..+.++|..+. ..|+|++|+.++++++.+.....++++|..+.++.++|.+|..+|+|++|++.
T Consensus 16 ~q~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 91 (311)
T 3nf1_A 16 FQGGGYEIPARLRTLHNLVIQYA----SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL 91 (311)
T ss_dssp CSSSCTTSCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCCCcchHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34579999999999999999984 36899999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHhhhhhhh----hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcC
Q 013549 131 LQKVENFKNSILG----VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG 206 (441)
Q Consensus 131 ~~ral~i~~~~lg----~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG 206 (441)
|++++.+.+...+ ....++.+++.+|..+|++++|..++++++++.....+... ..........|.++..+|
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH----PDVAKQLNNLALLCQNQG 167 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHcC
Confidence 9999998765422 22457888999999999999999999999998766521110 111223344677888999
Q ss_pred CHHHHHHHHHhhhhc--------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHH
Q 013549 207 NLESAESFFKGLQEE--------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278 (441)
Q Consensus 207 ~y~eAe~l~~~aL~~--------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~ 278 (441)
+|++|+.+|++++.. .+....+...+|.+|..+|++++|+.+|++++++..+..-....+... .-..
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~ 242 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK-----PIWM 242 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C-----CHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH-----HHHH
Confidence 999999999999982 222234557789999999999999999999999854322100001100 1112
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
....+..++..+...+++.+|...+++++. .+|....++.+||.+|..+|++++| ...|++|+++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~l~ 308 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAA------ETLEEAAMRSR 308 (311)
T ss_dssp HHHHHHHC-------CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHh
Confidence 334556777788888888888888877664 7899999999999999999999987 89999999986
Q ss_pred h
Q 013549 359 K 359 (441)
Q Consensus 359 ~ 359 (441)
+
T Consensus 309 ~ 309 (311)
T 3nf1_A 309 K 309 (311)
T ss_dssp C
T ss_pred h
Confidence 4
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=8.4e-24 Score=208.62 Aligned_cols=285 Identities=13% Similarity=0.052 Sum_probs=213.5
Q ss_pred CCCch-HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 55 GLNSN-PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 55 g~~h~-~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
.+++| ..+..+.++|..+.+ .|+|++|+.+|++++.+. |..+.++.++|.+|..+|+|++|++.|++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 57 HTENPFKDWPGAFEEGLKRLK----EGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp CSSCTTTTCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCcccchhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444 345567888888743 689999999999999854 44577899999999999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549 134 VENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES 213 (441)
Q Consensus 134 al~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~ 213 (441)
++.+.+.. ..++.+++.+|..+|++++|..++++++.+.......... .... .......+.++..+|++++|+.
T Consensus 125 al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~ 198 (365)
T 4eqf_A 125 CLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN-KKGS-PGLTRRMSKSPVDSSVLEGVKE 198 (365)
T ss_dssp HHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------CCHHHHHHHH
T ss_pred HHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhh-hccc-hHHHHHHHHHHhhhhhHHHHHH
Confidence 99887653 3478899999999999999999999998764332211000 0000 0011124667778999999999
Q ss_pred HHHhhhhccCC--chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 013549 214 FFKGLQEEEGC--TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 291 (441)
Q Consensus 214 l~~~aL~~~~~--~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~ 291 (441)
+|++++...+. ...+..++|.+|..+|+|++|+.+|++++++. .. ...++++||.+|.
T Consensus 199 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~-----------------~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR---PE-----------------DYSLWNRLGATLA 258 (365)
T ss_dssp HHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT-----------------CHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-----------------CHHHHHHHHHHHH
Confidence 99999996555 56778889999999999999999999999981 11 1246789999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc-CCCCCcch--
Q 013549 292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA-PPLESEGV-- 368 (441)
Q Consensus 292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~-~~~~~~~~-- 368 (441)
.+|+|++|+++|++++.+ +|....++.+||.+|..+|++++| ...|++++++... .++.++..
T Consensus 259 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~~~~~~~~~~~~~~ 324 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREA------VSNFLTALSLQRKSRNQQQVPHPA 324 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHH------HHHHHHHHHHHHCC----------
T ss_pred HcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCcccCCCcccchhh
Confidence 999999999999999997 677788999999999999999987 8999999999853 23334332
Q ss_pred --HhhhccHHHHHHHhccHHHHHHH
Q 013549 369 --ETKVDRTDIVALARGGYAEALSV 391 (441)
Q Consensus 369 --~~~l~nl~~~~~~~g~yaeal~~ 391 (441)
.....+++.++...|+++.+...
T Consensus 325 ~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 325 ISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp --CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 34556777777777777655443
No 9
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.92 E-value=1.6e-24 Score=228.36 Aligned_cols=143 Identities=10% Similarity=0.071 Sum_probs=126.6
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
+..+..||+|++|+++|+++|+|+ +. .+|++| |+ ++.+++|||.+|..||+|++|+++|+++|+|+++
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~---~~-----~lg~~H--p~--~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQ---EP-----VFADTN--LY--VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHH---TT-----TBCTTS--HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHH---HH-----hcCCCC--HH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999995 33 566433 32 5668999999999999999999999999999999
Q ss_pred hhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cCCCCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549 313 LFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVALARGGYAEALSV 391 (441)
Q Consensus 313 ~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~ 391 (441)
++|++||+|+.+++|||.+|..||+|++| +++|+|||+|++ ..|++||+|+..+++++.++..++.|.+|...
T Consensus 384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVG------HGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 999999999995 67999999999999999999888888766666
Q ss_pred hh
Q 013549 392 QQ 393 (441)
Q Consensus 392 ~~ 393 (441)
+.
T Consensus 458 ~~ 459 (490)
T 3n71_A 458 YH 459 (490)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 10
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=1.6e-22 Score=192.56 Aligned_cols=271 Identities=15% Similarity=0.116 Sum_probs=215.8
Q ss_pred CCchH-HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 56 LNSNP-VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 56 ~~h~~-~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
|++|. .+..+.++|..+. ..|+|++|+.++++++.+.... ++++..+.++.++|.+|..+|+|++|++.++++
T Consensus 36 ~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 109 (338)
T 3ro2_A 36 TEDLKTLSAIYSQLGNAYF----YLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44444 4677788999884 3689999999999999987665 468889999999999999999999999999999
Q ss_pred HHhhhhhhhh--hHHHHHHHHHHHHhcCC--------------------cchhHHHHHHHHHHHHhcCCCcchhhhhhHh
Q 013549 135 ENFKNSILGV--RVAAMEALAGLYLQLGQ--------------------DDTSSVVADKCLQLCEKHKPENYKTYGAVNS 192 (441)
Q Consensus 135 l~i~~~~lg~--~~~al~~La~l~~~~G~--------------------~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~ 192 (441)
+.+.+..-.. ...++.+++.+|..+|+ +++|..++++++.+....... ....
T Consensus 110 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~------~~~~ 183 (338)
T 3ro2_A 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR------AAQG 183 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCH------HHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH------HHHH
Confidence 9988764221 23477889999999999 899999999988887665421 1112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCC
Q 013549 193 RANAVKGLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMN 266 (441)
Q Consensus 193 ~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~ 266 (441)
......+.++..+|+|++|+.+|++++.. .... ..+..++|.++..+|++++|+.+|++++++......
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 258 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 258 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-----
Confidence 23344677888999999999999999982 1111 234567899999999999999999999999543211
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHH
Q 013549 267 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI 346 (441)
Q Consensus 267 ~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~ 346 (441)
......++.++|.+|..+|+|++|.++|++++.+..+.- +++....++.+||.+|..+|++++|
T Consensus 259 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A----- 322 (338)
T 3ro2_A 259 ---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQA----- 322 (338)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHH-----
T ss_pred ---------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCChHHH-----
Confidence 112345678999999999999999999999999998763 4677889999999999999999987
Q ss_pred HHHHHHHHHHHhhc
Q 013549 347 QEGLYRRALEFLKA 360 (441)
Q Consensus 347 Ae~ly~rAL~i~~~ 360 (441)
...|++++++.+.
T Consensus 323 -~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 323 -MHFAEKHLEISRE 335 (338)
T ss_dssp -HHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHh
Confidence 8999999999764
No 11
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=2.3e-22 Score=200.76 Aligned_cols=288 Identities=16% Similarity=0.092 Sum_probs=226.7
Q ss_pred CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (441)
Q Consensus 103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~ 182 (441)
..+..+..+..+|..+..+|+|++|+..|++++.+.+........++..++.+|..+|++++|..++++++.+.......
T Consensus 43 ~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 43 GGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 34788999999999999999999999999999998665433234578899999999999999999999999988765421
Q ss_pred cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc------cCCchHHHHHHHHHHHHccC---------------
Q 013549 183 NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE------EGCTGSAALSYGEYLHATRN--------------- 241 (441)
Q Consensus 183 ~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~------~~~~~~~a~~~a~~~~~qG~--------------- 241 (441)
.....+....|.++..+|+|++|+.+|++++.. .+....+..++|.+|..+|+
T Consensus 123 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 123 ------LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred ------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 111233345688888999999999999999982 22233456778999999999
Q ss_pred --hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc
Q 013549 242 --FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP 319 (441)
Q Consensus 242 --y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP 319 (441)
|++|+.+|++++++...... + .....++.++|.+|..+|+|++|+++|++++.+..+. .+++
T Consensus 197 ~~~~~A~~~~~~al~~~~~~~~-------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~ 260 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDLGD-------------R-GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRA 260 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-------------H-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcH
Confidence 99999999999998643221 0 1134578899999999999999999999999999984 3667
Q ss_pred hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchh---
Q 013549 320 KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK--- 396 (441)
Q Consensus 320 ~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~--- 396 (441)
.++.++.++|.+|..+|++++| +..|++++++.... .+++.....+.+++.++..+|+|++|+.....-.
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDA------AEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHH------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7889999999999999999987 89999999998643 3444566788899999999999999987653322
Q ss_pred -------hHHHHHHHHHHHHHhccChhHHH
Q 013549 397 -------DEGERMKRWAEAAWRNRRVSLAE 419 (441)
Q Consensus 397 -------~eae~~~~~a~~~~~~~r~~~~~ 419 (441)
..+..+...+..+++.+++..|.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 22344555677777766655443
No 12
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=4.4e-22 Score=199.12 Aligned_cols=255 Identities=11% Similarity=0.031 Sum_probs=210.4
Q ss_pred HHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh-h--
Q 013549 68 YALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG-V-- 144 (441)
Q Consensus 68 ~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg-~-- 144 (441)
.|..+. ..|+|++|+.+|++++.+.... ++++..+.++.++|.+|..+|+|++|+..+++++++.+..-. .
T Consensus 109 ~g~~~~----~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYEL----DQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHH----HTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHH----HhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 455542 4689999999999999987665 577889999999999999999999999999999999876522 1
Q ss_pred hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh----
Q 013549 145 RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE---- 220 (441)
Q Consensus 145 ~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~---- 220 (441)
...++++++.+|..+|++++|..++++++++....... .....+....|.++..+|+|++|+.+|++++.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 23578899999999999999999999999998766421 12223334578889999999999999999999
Q ss_pred -cc-CCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549 221 -EE-GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 298 (441)
Q Consensus 221 -~~-~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e 298 (441)
.. +....+..++|.++..+|++++|..+|++|+++..+... +. ....+.+||.+|..+|++
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~--~~~~~~~l~~~~~~~~~~-- 319 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-------------VI--YLSEFEFLKSLYLSGPDE-- 319 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------HH--HHHHHHHHHHHHTSSCCH--
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-------------HH--HHHHHHHHHHHHhCCCcH--
Confidence 23 444566788899999999999999999999999643211 11 123367899999999998
Q ss_pred HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549 299 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 361 (441)
Q Consensus 299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~ 361 (441)
+.+++|+.++++. ..+|.+..++.+||.+|..+|++++| ...|++|+++.+..
T Consensus 320 --~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A------~~~~~~al~~~~~i 372 (383)
T 3ulq_A 320 --EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKA------SAYFLKVEQVRQLI 372 (383)
T ss_dssp --HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHTSC
T ss_pred --HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHh
Confidence 6788888888887 77899999999999999999999987 89999999998754
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.4e-22 Score=200.14 Aligned_cols=310 Identities=15% Similarity=0.066 Sum_probs=240.5
Q ss_pred CCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 56 LNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 56 ~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
+.+|+.+..+..+|..+.+ .|+|++|+.+|++++.+ +|....++.++|.+|..+|+|++|+..|++++
T Consensus 20 ~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLA----AGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---CHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4678888889999998843 68999999999999975 34457899999999999999999999999998
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhH-------HHHHHHHHHHHcCCH
Q 013549 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSR-------ANAVKGLVELAHGNL 208 (441)
Q Consensus 136 ~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~-------a~al~gl~~~~qG~y 208 (441)
.+.+.. ..++..++.+|..+|++++|..++++++.+ .+............ .....+..+..+|+|
T Consensus 88 ~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 88 QLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 887553 347788999999999999999999888642 11110000111000 111246667899999
Q ss_pred HHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHH
Q 013549 209 ESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ 288 (441)
Q Consensus 209 ~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ 288 (441)
++|..+|++++...+....+...+|.+|..+|++++|+.+|++++++. .. ...+++++|.
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-----------------~~~~~~~l~~ 219 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---ND-----------------NTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CS-----------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-----------------CHHHHHHHHH
Confidence 999999999999766677788889999999999999999999999882 11 1246789999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHH---------HHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 289 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL---------TCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 289 ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l---------~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
+|..+|++++|+.+|++++.+ .++++.+...+ .++|.+|..+|++++| ..+|++++++.
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~l~~~- 287 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA------TSKYESVMKTE- 287 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC-
Confidence 999999999999999999954 67777766655 4559999999999987 89999999863
Q ss_pred cCCCCCcc-hHhhhccHHHHHHHhccHHHHHHHhhchh----hHHHHHHHHHHHHHhccChhHHHH
Q 013549 360 APPLESEG-VETKVDRTDIVALARGGYAEALSVQQNRK----DEGERMKRWAEAAWRNRRVSLAEA 420 (441)
Q Consensus 360 ~~~~~~~~-~~~~l~nl~~~~~~~g~yaeal~~~~~r~----~eae~~~~~a~~~~~~~r~~~~~~ 420 (441)
|+++. ....+.+++.++...|+|++|+.....-. ...+.+...+..++..+++..|..
T Consensus 288 ---p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 288 ---PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp ---CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 33443 24567789999999999999988764322 225777788888888888776643
No 14
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.91 E-value=6.5e-23 Score=191.69 Aligned_cols=258 Identities=15% Similarity=0.142 Sum_probs=198.1
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh----hhHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG----VRVAAMEALA 153 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg----~~~~al~~La 153 (441)
+.|++++|+.+|++++.+..+..++++|..+.++.++|.+|..+|+|++|++.|++++.+.....| ....++.+++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999998765422 2345788999
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHHhcCCC-cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc--------cCC
Q 013549 154 GLYLQLGQDDTSSVVADKCLQLCEKHKPE-NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE--------EGC 224 (441)
Q Consensus 154 ~l~~~~G~~~~A~~l~~~~L~i~~~~~~~-~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~--------~~~ 224 (441)
.+|..+|++++|..++++++.+.....+. ++ ....+....|.++..+|+|++|+.+|++++.. .+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHP-----DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999999999998665421 11 11223334677888999999999999999983 222
Q ss_pred chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549 225 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 225 ~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~ 304 (441)
...+..++|.++..+|++++|+.+|++++++...... ..... . ....+..++..+...+.+..+.. |.
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~-~~ 235 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF-GSVNG--------D--NKPIWMHAEEREESKDKRRDSAP-YG 235 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS-SSCCS--------S--CCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCcch--------h--HHHHHHHHHHHHhcCCchhHHHH-HH
Confidence 3445678899999999999999999999999644322 11010 0 11235677777777777776655 33
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
++ ....+.++++||....++.+||.+|..+|++++| ..+|++++++.|
T Consensus 236 ~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~k 283 (283)
T 3edt_B 236 EY-GSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAA------HTLEDCASRNRK 283 (283)
T ss_dssp --------CCCCCCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC-
T ss_pred HH-HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhhC
Confidence 33 4455678889999999999999999999999987 899999998753
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=3.1e-22 Score=196.21 Aligned_cols=279 Identities=12% Similarity=0.069 Sum_probs=217.0
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
+..+.++|..+.+ .|+|++|+.+|++++.+ +|....++.++|.+|..+|+|++|++.|++++.+.+..
T Consensus 64 ~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 131 (368)
T 1fch_A 64 HPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131 (368)
T ss_dssp CSSHHHHHHHHHH----TTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence 4556778888743 68999999999999975 34456789999999999999999999999999887653
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh------hhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY------GAVNSRANAVKGLVELAHGNLESAESFF 215 (441)
Q Consensus 142 lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~------~~l~~~a~al~gl~~~~qG~y~eAe~l~ 215 (441)
..++.+++.+|..+|++++|..++++++.+....... +... ... .......+.++ .+|++++|+.+|
T Consensus 132 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~A~~~~ 204 (368)
T 1fch_A 132 ----QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL-VTPAEEGAGGAGL-GPSKRILGSLL-SDSLFLEVKELF 204 (368)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG-CC----------------CTTHHHH-HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH-HHHHHHHhhhhcc-cHHHHHHHHHh-hcccHHHHHHHH
Confidence 3478889999999999999999999987653221100 0000 000 00000234455 899999999999
Q ss_pred HhhhhccCC--chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549 216 KGLQEEEGC--TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 293 (441)
Q Consensus 216 ~~aL~~~~~--~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q 293 (441)
++++...+. ...+..++|.++..+|+|++|+.+|++++.+ ... ...+++++|.+|..+
T Consensus 205 ~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~-----------------~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 205 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPN-----------------DYLLWNKLGATLANG 264 (368)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHT
T ss_pred HHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcC-----------------CHHHHHHHHHHHHHc
Confidence 999996555 5667788999999999999999999999988 111 124678999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC-CC---CCcchH
Q 013549 294 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PL---ESEGVE 369 (441)
Q Consensus 294 G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~-~~---~~~~~~ 369 (441)
|+|++|+.+|++++.+ +|....++.++|.+|..+|++++| ...|++++++.... ++ .++...
T Consensus 265 g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 265 NQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREA------VEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp TCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHTC------CCCCCH
T ss_pred CCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhCCCCCCccccccchhh
Confidence 9999999999999987 466678899999999999999987 89999999997432 22 234556
Q ss_pred hhhccHHHHHHHhccHHHHHHHhh
Q 013549 370 TKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 370 ~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
....+++.++...|++++|.....
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 677889999999998888777654
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=5.7e-22 Score=190.19 Aligned_cols=269 Identities=14% Similarity=0.126 Sum_probs=215.8
Q ss_pred HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh
Q 013549 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV 144 (441)
Q Consensus 65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~ 144 (441)
+...|..+. ..|+|++|+.++++++... |....++..++.++..+|++++|+..+++++...+..
T Consensus 25 ~~~~a~~~~----~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 89 (330)
T 3hym_B 25 VVSLAERHY----YNCDFKMCYKLTSVVMEKD--------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN--- 89 (330)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---
T ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHHcC--------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---
Confidence 445555552 2489999999999999743 3334567888999999999999999999998876543
Q ss_pred hHHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Q 013549 145 RVAAMEALAGLYLQLG-QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG 223 (441)
Q Consensus 145 ~~~al~~La~l~~~~G-~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~ 223 (441)
..++..++.++..+| ++++|..++++++.+. +.. ..+....|.++..+|+|++|+..|++++...+
T Consensus 90 -~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~----~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 90 -PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE----KTY--------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp -THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC----TTC--------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----Ccc--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 236788999999999 8999999999886432 111 11223467778899999999999999999655
Q ss_pred CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 224 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 303 (441)
Q Consensus 224 ~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~ 303 (441)
....+...+|.++..+|++++|+.+|++++++. .. ...+++++|.+|..+|+|++|+.+|
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PE-----------------DPFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CC-----------------ChHHHHHHHHHHHHcccHHHHHHHH
Confidence 555677779999999999999999999999871 11 1245789999999999999999999
Q ss_pred HHHHHHHHHhhCCCC-chHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHh
Q 013549 304 TRTLTKTEELFGSHH-PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 382 (441)
Q Consensus 304 ~rAL~i~e~~lG~~H-P~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~ 382 (441)
++++.+..+.-++.. |....++.++|.+|..+|++++| ...|++++++. ++++ ..+.+++.++..+
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~a~~~~----~~~~---~~~~~la~~~~~~ 283 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA------LDYHRQALVLI----PQNA---STYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS----TTCS---HHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHhhC----ccch---HHHHHHHHHHHHh
Confidence 999999988766554 56678999999999999999987 89999999873 2333 4667899999999
Q ss_pred ccHHHHHHHhhc
Q 013549 383 GGYAEALSVQQN 394 (441)
Q Consensus 383 g~yaeal~~~~~ 394 (441)
|+|++|+....+
T Consensus 284 g~~~~A~~~~~~ 295 (330)
T 3hym_B 284 GNFENAVDYFHT 295 (330)
T ss_dssp TCHHHHHHHHHT
T ss_pred ccHHHHHHHHHH
Confidence 999999987643
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=1.5e-22 Score=199.67 Aligned_cols=252 Identities=13% Similarity=0.084 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
+.+..+.++|..+.+ .|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|++.|++++.+.+
T Consensus 97 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 97 GDAEAWQFLGITQAE----NENEQAAIVALQRCLELQ--------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164 (365)
T ss_dssp TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCc
Confidence 335567788888743 689999999999999863 44577899999999999999999999999998877
Q ss_pred hhhhhh------HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHH
Q 013549 140 SILGVR------VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAES 213 (441)
Q Consensus 140 ~~lg~~------~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~ 213 (441)
...... ......++.++..+|++++|..++++++.+..... . .......|.++..+|+|++|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~--------~~~~~~l~~~~~~~g~~~~A~~ 234 (365)
T 4eqf_A 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI--D--------PDLQTGLGVLFHLSGEFNRAID 234 (365)
T ss_dssp HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC--C--------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc--C--------HHHHHHHHHHHHHCCCHHHHHH
Confidence 642211 22345568889999999999999999986532110 0 1122346788889999999999
Q ss_pred HHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549 214 FFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 293 (441)
Q Consensus 214 l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q 293 (441)
+|++++...+....+..++|.+|..+|+|++|+..|++++++ ... ...++.+||.+|..+
T Consensus 235 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~-----------------~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 235 AFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPG-----------------FIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-----------------chHHHHHHHHHHHHC
Confidence 999999977777778889999999999999999999999998 111 124678999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCchH----HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 294 GNFGDAEEILTRTLTKTEELFGSHHPKV----GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 294 G~y~eAe~l~~rAL~i~e~~lG~~HP~v----a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
|+|++|..+|++++.+..+..|+.||.. ...+.+|+.+|..+|+.+.+ +...++++++++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a------~~~~~~~l~~~~ 358 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF------QAANLGDLDVLL 358 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH------HHHHTTCCGGGT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH------HHHHHhhHHHHH
Confidence 9999999999999999999999888776 67899999999999999876 778888888874
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=206.85 Aligned_cols=299 Identities=12% Similarity=0.004 Sum_probs=210.0
Q ss_pred CCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCC-CCchhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 013549 55 GLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQ-LAESWRGISLLAMSTLLYESGNYVEAIEKLQK 133 (441)
Q Consensus 55 g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g-~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~r 133 (441)
--+++..+...+++|.++. .+|+|++|+..|++|+++.....+ ..||..+.+++|+|.+|..+|+|++|+..|++
T Consensus 44 ~~~~~~~a~~yn~Lg~~~~----~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 44 FQNREFKATMCNLLAYLKH----LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp SCC---CCHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCChhHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4456666778888999983 479999999999999998776655 45899999999999999999999999999999
Q ss_pred HHHhhhhhhhh----hHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC
Q 013549 134 VENFKNSILGV----RVAAMEALAGLYLQ--LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN 207 (441)
Q Consensus 134 al~i~~~~lg~----~~~al~~La~l~~~--~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~ 207 (441)
++.+.+...+. ...++.+++..+.. .++|++|..++++++.+- |..+ ...... +.........|+
T Consensus 120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p~~~---~~~~~~--~~~~~~l~~~~~ 190 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNP---EFTSGL--AIASYRLDNWPP 190 (472)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----TTCH---HHHHHH--HHHHHHHHHSCC
T ss_pred HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----CCCH---HHHHHH--HHHHHHhcCchH
Confidence 99998764332 12345555554444 457899999999998653 2111 111111 111112236899
Q ss_pred HHHHHHHHHhhhhccCCchHHHHHHH----HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549 208 LESAESFFKGLQEEEGCTGSAALSYG----EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 283 (441)
Q Consensus 208 y~eAe~l~~~aL~~~~~~~~~a~~~a----~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al 283 (441)
+++|...|++++...+....+..+++ .++...|++++|+.+|++++.+ ... ...++
T Consensus 191 ~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~-----------------~~~~~ 250 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APG-----------------VTDVL 250 (472)
T ss_dssp CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH---CSS-----------------CHHHH
T ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---Ccc-----------------HHHHH
Confidence 99999999999996555555544444 4455678999999999999988 111 12457
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhh------hhHHHHHHHHHHHHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS------ALLIQEGLYRRALEF 357 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~------~~~~Ae~ly~rAL~i 357 (441)
.++|.+|..+|++++|.+.|++|+.+ +|+.+.++.+||.+|..++....+. ....+...+++|++.
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 89999999999999999999999986 7888899999999998876654320 111234555666665
Q ss_pred hhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 358 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 358 ~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
++.....+|.......+++.++..+|+|++|+..+++
T Consensus 323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 5322212334445667899999999999999887643
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=5.2e-21 Score=184.92 Aligned_cols=304 Identities=13% Similarity=0.052 Sum_probs=233.7
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
+..+.++|..+. ..|+|++|+.+|++++... |....++.++|.+|..+|+|++|+..|++++.+.+..
T Consensus 3 ~~~~~~~~~~~~----~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 70 (359)
T 3ieg_A 3 VEKHLELGKKLL----AAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF 70 (359)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 345667777773 3689999999999999743 3345789999999999999999999999999886643
Q ss_pred hhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhH-------HHHHHHHHHHHcCCHHHHHHH
Q 013549 142 LGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSR-------ANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 142 lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~-------a~al~gl~~~~qG~y~eAe~l 214 (441)
. .++..++.++..+|++++|..++++++.+. +............ .....+.++..+|+|++|..+
T Consensus 71 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 71 T----AARLQRGHLLLKQGKLDEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp H----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c----hHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 2 467889999999999999999999886432 1000111111100 011235677899999999999
Q ss_pred HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC
Q 013549 215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 294 (441)
Q Consensus 215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG 294 (441)
|++++...+....+...+|.++..+|++++|+..|++++.+ ... ...++.++|.+|..+|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 143 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL---KSD-----------------NTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CSC-----------------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC-----------------CHHHHHHHHHHHHHcC
Confidence 99999976667778888999999999999999999999976 111 1245789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH---------HHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCC
Q 013549 295 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLT---------CLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 365 (441)
Q Consensus 295 ~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~---------nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~ 365 (441)
++++|...|++++.+ .++++.+...+. ++|.+|..+|++++| ...|++++++. |+.
T Consensus 203 ~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~~----~~~ 267 (359)
T 3ieg_A 203 DHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA------TSKYESVMKTE----PSV 267 (359)
T ss_dssp CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----CSS
T ss_pred CHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC----CCc
Confidence 999999999999964 578887665544 459999999999987 89999998874 333
Q ss_pred cc-hHhhhccHHHHHHHhccHHHHHHHhhchhh----HHHHHHHHHHHHHhccChhHHHH
Q 013549 366 EG-VETKVDRTDIVALARGGYAEALSVQQNRKD----EGERMKRWAEAAWRNRRVSLAEA 420 (441)
Q Consensus 366 ~~-~~~~l~nl~~~~~~~g~yaeal~~~~~r~~----eae~~~~~a~~~~~~~r~~~~~~ 420 (441)
+. ....+.+++.++..+|+|++|+.....-.. ..+.+...+..+++.+++..|..
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 327 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 33 234456789999999999999987644322 25677788888888888766654
No 20
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.2e-21 Score=184.53 Aligned_cols=275 Identities=15% Similarity=0.127 Sum_probs=198.5
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh----hhhHHHHHHHHHHHHhcCCcchhHHHHH
Q 013549 95 TQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL----GVRVAAMEALAGLYLQLGQDDTSSVVAD 170 (441)
Q Consensus 95 i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l----g~~~~al~~La~l~~~~G~~~~A~~l~~ 170 (441)
......|+++|..+.++.++|.+|..+|+|++|+..|++++.+..... .....++..++.+|..+|++++|..+++
T Consensus 14 ~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (311)
T 3nf1_A 14 LYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLN 93 (311)
T ss_dssp GSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345567899999999999999999999999999999999999876543 1234578889999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc------c--CCchHHHHHHHHHHHHccCh
Q 013549 171 KCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE------E--GCTGSAALSYGEYLHATRNF 242 (441)
Q Consensus 171 ~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~------~--~~~~~~a~~~a~~~~~qG~y 242 (441)
+++.+.....+... ..........+.++..+|+|++|+.+|++++.. . +....+..++|.++..+|+|
T Consensus 94 ~al~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (311)
T 3nf1_A 94 DALAIREKTLGKDH----PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169 (311)
T ss_dssp HHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhCCCC----hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 99998766521110 111223345677888999999999999999982 1 22234456789999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCCchH
Q 013549 243 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL-FGSHHPKV 321 (441)
Q Consensus 243 ~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~-lG~~HP~v 321 (441)
++|+.+|++++++..+..+ . .++. ...++.+||.+|..+|+|++|+++|++++.+..+. +|..+|..
T Consensus 170 ~~A~~~~~~a~~~~~~~~~--------~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLG--------P--DDPN--VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSC--------T--TCHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHhC--------C--CCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 9999999999999644322 0 0121 34568899999999999999999999999997765 78888887
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 322 GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 322 a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
.....+++.++...+.+..+..+.++...++++ ...+|.....+.+++.++..+|+|++|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC-------KVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc-------CCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777766666543333333344333 3466778888899999999999998887765
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=7.4e-22 Score=193.46 Aligned_cols=284 Identities=15% Similarity=0.113 Sum_probs=214.4
Q ss_pred ChhhHHHHHH-HHHHhhhccccCCCCCchh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 013549 78 SDESYSQGML-VLEQCLSTQPSDGQLAESW-RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGL 155 (441)
Q Consensus 78 ~~g~y~eAl~-~~eqaL~i~~~~~g~~h~~-~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l 155 (441)
..|+|++|+. .|++++.+.. +.|. .+..+.++|.++..+|+|++|+..|++++.+.+.. ..++..++.+
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~ 107 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEE-----ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTT 107 (368)
T ss_dssp ---------CHHHHCCCCCCS-----SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCC-----CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Confidence 3578999999 9999997653 3332 35668899999999999999999999999876543 3477889999
Q ss_pred HHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHH-----
Q 013549 156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAAL----- 230 (441)
Q Consensus 156 ~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~----- 230 (441)
|..+|++++|..++++++.+. +.. ..+....+.++..+|++++|..+|++++...+.......
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~----~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELK----PDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred HHHCcCHHHHHHHHHHHHhcC----CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 999999999999999997653 111 112234677888999999999999999984332222211
Q ss_pred -----------HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549 231 -----------SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 299 (441)
Q Consensus 231 -----------~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA 299 (441)
.++.++ .+|++++|+.+|++++.+. .. .. ...++.++|.+|..+|+|++|
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~---p~-----~~----------~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD---PT-----SI----------DPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHS---TT-----SC----------CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC---cC-----cc----------cHHHHHHHHHHHHHcCCHHHH
Confidence 345555 8999999999999999881 11 00 124578999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHH
Q 013549 300 EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA 379 (441)
Q Consensus 300 e~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~ 379 (441)
+.+|++++.+ +|....++.++|.+|..+|++++| +..|++++++. |+......+++.++
T Consensus 237 ~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~-------~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 237 VDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEA------VAAYRRALELQ-------PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC-------CCcHHHHHHHHHHH
Confidence 9999999987 456667899999999999999987 89999999872 33345677899999
Q ss_pred HHhccHHHHHHHhhchhhH---------------HHHHHHHHHHHHhccChhHHHHhc
Q 013549 380 LARGGYAEALSVQQNRKDE---------------GERMKRWAEAAWRNRRVSLAEALN 422 (441)
Q Consensus 380 ~~~g~yaeal~~~~~r~~e---------------ae~~~~~a~~~~~~~r~~~~~~l~ 422 (441)
..+|+|++|+.....-... ...|...+..+.+.+++..++++.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9999999998865332111 466777888888889988888775
No 22
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.89 E-value=6.9e-21 Score=190.64 Aligned_cols=248 Identities=10% Similarity=0.043 Sum_probs=203.1
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG---VRVAAMEALAG 154 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg---~~~~al~~La~ 154 (441)
..|+|++|+..|++++.+.... ++.+..+.++.+||.+|..+|+|++|+..+++++++.+...+ ....++++++.
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4689999999999999988765 467899999999999999999999999999999999876432 12457889999
Q ss_pred HHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-----ccCCchHHH
Q 013549 155 LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-----EEGCTGSAA 229 (441)
Q Consensus 155 l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-----~~~~~~~~a 229 (441)
+|..+|++++|..++++++++....... .....+....|.++..+|+|++|+.+|++++. ..+....+.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQND------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 9999999999999999999998765421 12223334568889999999999999999999 444445667
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
.++|.++..+|++++|..+|++|+++. ... +. +. ....+..|+.+|...|+. ..+.+|+.+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~---~~~-~~---------~~--~~~~~~~l~~ly~~~~~~----~~~~~al~~ 325 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHI---TAR-SH---------KF--YKELFLFLQAVYKETVDE----RKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CTT-CC---------SC--HHHHHHHHHHHHSSSCCH----HHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH---HHc-CC---------HH--HHHHHHHHHHHHhCCCcH----HHHHHHHHH
Confidence 888999999999999999999999993 220 01 11 123467899999999995 566667777
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 310 TEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 310 ~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
+++ ...+|.+...+.+||.+|..+|++++| ...|++++++.+.
T Consensus 326 ~~~--~~~~~~~~~~~~~la~~y~~~g~~~~A------~~~~~~al~~~~~ 368 (378)
T 3q15_A 326 FEK--KNLHAYIEACARSAAAVFESSCHFEQA------AAFYRKVLKAQED 368 (378)
T ss_dssp HHH--TTCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHH
T ss_pred HHh--CCChhHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHH
Confidence 766 457889999999999999999999987 8899999999753
No 23
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.5e-20 Score=181.62 Aligned_cols=282 Identities=11% Similarity=0.044 Sum_probs=213.6
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh--
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN-- 139 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~-- 139 (441)
...+.++|..+. ..|+|++|+.++++++.+. |....++..+|.+|..+|+|++|+..|++++.+.+
T Consensus 37 ~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 104 (359)
T 3ieg_A 37 YIAYYRRATVFL----AMGKSKAALPDLTKVIALK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104 (359)
T ss_dssp HHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHHH----HccCHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Confidence 346677888873 3689999999999999863 33347899999999999999999999999998876
Q ss_pred -hhhhhh--------HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549 140 -SILGVR--------VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (441)
Q Consensus 140 -~~lg~~--------~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e 210 (441)
...... ......++.++..+|++++|..++++++++. +.. .......+.++..+|++++
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC----VWD--------AELRELRAECFIKEGEPRK 172 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHHTTCHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCc--------hHHHHHHHHHHHHCCCHHH
Confidence 432111 0112334788999999999999999887542 111 1122346778889999999
Q ss_pred HHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549 211 AESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 290 (441)
Q Consensus 211 Ae~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly 290 (441)
|+..|++++...+....+...+|.++..+|++++|...|++++++. .. +.... ........+....++|.++
T Consensus 173 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~-~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 173 AISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QD----HKRCF-AHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp HHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT----CHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cc----chHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999777777888899999999999999999999999872 11 00000 0000000112245679999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549 291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 369 (441)
Q Consensus 291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~ 369 (441)
..+|+|++|..+|++++.+. +++|.. ...+.++|.+|..+|++++| ...|++++++. |+..
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~-------~~~~ 306 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEA------IRICSEVLQME-------PDNV 306 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------TTCH
T ss_pred HHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC-------cccH
Confidence 99999999999999999864 555554 35688999999999999987 89999999872 3333
Q ss_pred hhhccHHHHHHHhccHHHHHHHhh
Q 013549 370 TKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 370 ~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
..+.+++.++...|+|++|+....
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 567789999999999999988763
No 24
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.2e-20 Score=190.24 Aligned_cols=284 Identities=12% Similarity=0.065 Sum_probs=215.9
Q ss_pred hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~ 138 (441)
|+.+..+.++|..+. ..|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|+..|++++.+.
T Consensus 57 p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 124 (450)
T 2y4t_A 57 PDNYIAYYRRATVFL----AMGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124 (450)
T ss_dssp TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 334566777888873 3689999999999999853 3446789999999999999999999999998876
Q ss_pred hhhh---hhh--------HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC
Q 013549 139 NSIL---GVR--------VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN 207 (441)
Q Consensus 139 ~~~l---g~~--------~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~ 207 (441)
+... ... ......++..+...|++++|..++++++.+. +.. .......+.++..+|+
T Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~--------~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----VWD--------AELRELRAECFIKEGE 192 (450)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--------hHHHHHHHHHHHHCCC
Confidence 5432 110 0123445777999999999999999887542 111 1122346778889999
Q ss_pred HHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch-hHHHHHHHHHH
Q 013549 208 LESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL-EEVALAATFAL 286 (441)
Q Consensus 208 y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~-~~~~~~al~nL 286 (441)
+++|..+|++++...+....+...+|.+|..+|++++|+.+|++++.+. .. ... ..... .-..+....++
T Consensus 193 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~-----~~~-~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QD-----HKR-CFAHYKQVKKLNKLIES 263 (450)
T ss_dssp GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----CHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-----hHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999666667788889999999999999999999999871 11 100 00000 00001123456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCC
Q 013549 287 GQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLES 365 (441)
Q Consensus 287 g~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~ 365 (441)
|.++..+|+|++|.++|++++.+ .+++|.. ...+.++|.+|..+|++++| +..|++++++.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~------- 325 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEA------IRVCSEVLQME------- 325 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHHC-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHhC-------
Confidence 99999999999999999999984 4667765 57899999999999999987 89999999872
Q ss_pred cchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549 366 EGVETKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 366 ~~~~~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
|+....+.+++.++..+|+|++|+....
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3334567789999999999999988763
No 25
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.88 E-value=4e-20 Score=183.33 Aligned_cols=304 Identities=13% Similarity=0.030 Sum_probs=221.0
Q ss_pred ccCCCchHHHHHHH-HHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHH
Q 013549 53 INGLNSNPVVLQMI-NYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKL 131 (441)
Q Consensus 53 ~~g~~h~~~a~~m~-n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~ 131 (441)
|...+.|..-..+. ..+..+. ..|++++|+.++++++.... ..+....+.+++++|.+|..+|+|++|+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 76 (373)
T 1hz4_A 4 IKDIREDTMHAEFNALRAQVAI----NDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALM 76 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 43333444433333 3555542 36899999999999998662 2234557889999999999999999999999
Q ss_pred HHHHHhhhhhhhhh---HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCH
Q 013549 132 QKVENFKNSILGVR---VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNL 208 (441)
Q Consensus 132 ~ral~i~~~~lg~~---~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y 208 (441)
++++.+.+.. +.. ..++.+++.++..+|++++|..++++++++......... ..........+.++..+|++
T Consensus 77 ~~al~~~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 77 QQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL----PMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS----THHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhc-CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC----cHHHHHHHHHHHHHHHhcCH
Confidence 9999988764 332 346788999999999999999999999999876552100 11122233467788899999
Q ss_pred HHHHHHHHhhhhccC-----CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549 209 ESAESFFKGLQEEEG-----CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 283 (441)
Q Consensus 209 ~eAe~l~~~aL~~~~-----~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al 283 (441)
++|+.+|++++...+ ....+..+++.++..+|++++|..++++++.+.. . .+ . +........
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~---~------~~--~--~~~~~~~~~ 218 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG---N------GK--Y--HSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---T------SC--C--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---c------cC--c--chhHHHHHH
Confidence 999999999998211 1233456789999999999999999999999842 1 01 0 000111112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCC
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPL 363 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~ 363 (441)
..++.++..+|++++|+.++++++.+. .+..|.. ...+.++|.+|..+|++++| ...+++++++....+
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~-~~~~~~la~~~~~~g~~~~A------~~~l~~a~~~~~~~~- 287 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPE---FANNHFL-QGQWRNIARAQILLGEFEPA------EIVLEELNENARSLR- 287 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCC---CTTCGGG-HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCC---CCcchhh-HHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHhCc-
Confidence 245677999999999999999998643 2222332 33578999999999999987 899999999986533
Q ss_pred CCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 364 ESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 364 ~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
..+.......+++.++..+|++++|....
T Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 288 LMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 22344456668899999999999998765
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=5.5e-21 Score=183.12 Aligned_cols=290 Identities=13% Similarity=0.011 Sum_probs=216.2
Q ss_pred cCCCch-HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 013549 54 NGLNSN-PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (441)
Q Consensus 54 ~g~~h~-~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ 132 (441)
+.++.| ..+..+.+.|..+. ..|+|++|+.+|++++... |....++..+|.++..+|+|++|+..|+
T Consensus 12 ~~~~~~~~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 79 (327)
T 3cv0_A 12 FEANNPYMYHENPMEEGLSML----KLANLAEAALAFEAVCQAA--------PEREEAWRSLGLTQAENEKDGLAIIALN 79 (327)
T ss_dssp CCSSCGGGGSSCHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhccchhhhHHHHHHHHHHH----HhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444 34455677788773 3689999999999999743 4456788999999999999999999999
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhh---HhHHHHHHHH-HHHHcCCH
Q 013549 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAV---NSRANAVKGL-VELAHGNL 208 (441)
Q Consensus 133 ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l---~~~a~al~gl-~~~~qG~y 208 (441)
+++.+.+.. ..++..++.+|..+|++++|..++++++.+....... +...... ......+.+. ++..+|++
T Consensus 80 ~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 80 HARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL-GSVNLQADVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------CCTTSHHHH
T ss_pred HHHhcCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH-HHHHhHHHHHHHHHHHHHHhHHHHHcccH
Confidence 998886543 2467889999999999999999999987553222110 0000000 0000001022 36689999
Q ss_pred HHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHH
Q 013549 209 ESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ 288 (441)
Q Consensus 209 ~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ 288 (441)
++|..+|++++...+....+...+|.++..+|++++|+.+|++++++ ... ...++.++|.
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~l~~ 214 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPD-----------------DAQLWNKLGA 214 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCC-----------------cHHHHHHHHH
Confidence 99999999999966666777888999999999999999999999987 111 1235789999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC-CCCCcc
Q 013549 289 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP-PLESEG 367 (441)
Q Consensus 289 ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~-~~~~~~ 367 (441)
+|..+|+|++|..+|++++.+ +|....++.++|.+|..+|++++| ...|++++++.... .+.+..
T Consensus 215 ~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~~~~~~~~~~ 280 (327)
T 3cv0_A 215 TLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLA------AKQLVRAIYMQVGGTTPTGEA 280 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHTTSCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHH------HHHHHHHHHhCCccccccccc
Confidence 999999999999999999986 345556788999999999999987 89999999987432 122111
Q ss_pred ----hHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 368 ----VETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 368 ----~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
......+++.++...|++++|......
T Consensus 281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 455677899999999999988887643
No 27
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.88 E-value=1.6e-20 Score=196.60 Aligned_cols=284 Identities=13% Similarity=0.123 Sum_probs=227.0
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..|++++|+.+|++++.. |....+++.++..|..+|+|++|++.|++++...+.. ..++..++.++.
T Consensus 284 ~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~ 350 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL---------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN----LDVYPLHLASLH 350 (597)
T ss_dssp THHHHHHHHHHHHTSTTG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----CTTHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcC---------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc----HHHHHHHHHHHH
Confidence 578999999999999864 2346789999999999999999999999998776542 235778889999
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH 237 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~ 237 (441)
.+|++++|..++++++.. .+.. .......+.++..+|++++|..+|++++...+....+...++.+|.
T Consensus 351 ~~g~~~~A~~~~~~~~~~----~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDR----HPEK--------AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH----CTTS--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhh----Cccc--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999888632 2111 1122345777889999999999999999966666677788999999
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
.+|++++|+.+|++++++. .. . ..++++||.+|..+|++++|+++|++++.+ .++
T Consensus 419 ~~g~~~~A~~~~~~~~~~~---~~-----~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 473 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLF---QG-----T------------HLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQY 473 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTT---TT-----C------------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCC
T ss_pred HcCCHHHHHHHHHHHHHhC---cc-----c------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Confidence 9999999999999998761 11 1 135789999999999999999999999975 344
Q ss_pred CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcc-hHhhhccHHHHHHHhccHHHHHHHhhchh
Q 013549 318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGGYAEALSVQQNRK 396 (441)
Q Consensus 318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~-~~~~l~nl~~~~~~~g~yaeal~~~~~r~ 396 (441)
+| .+++++|.+|..+|++++| +.+|++++++.... +..|+ ....+.+++.++..+|+|++|+....+-.
T Consensus 474 ~~---~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 474 DP---LLLNELGVVAFNKSDMQTA------INHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp CH---HHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHS-CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Ch---HHHHHHHHHHHHhCCHHHH------HHHHHHHHHhhhcc-ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44 6699999999999999987 89999999997543 23444 36678899999999999999998764422
Q ss_pred h----HHHHHHHHHHHHHhccChhHHHHh
Q 013549 397 D----EGERMKRWAEAAWRNRRVSLAEAL 421 (441)
Q Consensus 397 ~----eae~~~~~a~~~~~~~r~~~~~~l 421 (441)
. ..+.+...+..+++.+++..+...
T Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 2 256777788888888888776543
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=4.7e-21 Score=195.13 Aligned_cols=264 Identities=16% Similarity=0.135 Sum_probs=196.2
Q ss_pred hhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh-----hHHH
Q 013549 74 RSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV-----RVAA 148 (441)
Q Consensus 74 ~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~-----~~~a 148 (441)
.|.|..++++.++..+++.+....... +++..+..+++||.+|..+|+|++|++.|++|+++.+...+. ...+
T Consensus 19 hf~w~l~~~~~~l~~~e~~~~~~~~~~--~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~ 96 (472)
T 4g1t_A 19 HFTWNLMEGENSLDDFEDKVFYRTEFQ--NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVT 96 (472)
T ss_dssp TTTSCTTTTCCCHHHHHHHHHHHTTSC--C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 366677788899999999888776665 455678899999999999999999999999999987764332 2457
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC-cchhhhhhHhHHHHHHHHHHH--HcCCHHHHHHHHHhhhhccCCc
Q 013549 149 MEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE-NYKTYGAVNSRANAVKGLVEL--AHGNLESAESFFKGLQEEEGCT 225 (441)
Q Consensus 149 l~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~-~~~~~~~l~~~a~al~gl~~~--~qG~y~eAe~l~~~aL~~~~~~ 225 (441)
++|++.+|..+|++++|..++++++.+....... +... .......|.++. .+++|++|+.+|++++...+..
T Consensus 97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~ 171 (472)
T 4g1t_A 97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES-----PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh-----HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999999999999998765521 1111 111223454444 4668999999999999977777
Q ss_pred hHHHHHHHHHH---HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHH----HHHHHcCCHHH
Q 013549 226 GSAALSYGEYL---HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG----QLEAHMGNFGD 298 (441)
Q Consensus 226 ~~~a~~~a~~~---~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg----~ly~~qG~y~e 298 (441)
+.+..+++.++ ...|++++|++.|++|+++ ... . ..+..++| .++..+|++++
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l---~p~-----~------------~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL---NPD-----N------------QYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH---CSS-----C------------HHHHHHHHHHHHHCC------CH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc---CCc-----c------------hHHHHHHHHHHHHHHhhhhHHHH
Confidence 77777777664 4568889999999999998 111 1 12334454 45566789999
Q ss_pred HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHH
Q 013549 299 AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIV 378 (441)
Q Consensus 299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~ 378 (441)
|+++|++++.+ +|....++.++|.+|..+|++++| ...|++|+++. |+......+++.+
T Consensus 232 a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~-------p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 232 GEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKA------IELLKKALEYI-------PNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS-------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CccHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHhC-------CChHHHHHHHHHH
Confidence 99999999875 566677899999999999999987 89999998873 4445667788888
Q ss_pred HHHhccH
Q 013549 379 ALARGGY 385 (441)
Q Consensus 379 ~~~~g~y 385 (441)
|..++.+
T Consensus 291 y~~~~~~ 297 (472)
T 4g1t_A 291 YRAKVFQ 297 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765443
No 29
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.88 E-value=1.8e-22 Score=209.68 Aligned_cols=122 Identities=8% Similarity=0.055 Sum_probs=108.1
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
..+|+|+||+++|+++|+|. +. .+|++| |. ++.+++|||.+|..||+|++|+++|+|+|+|+++++|+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~---~~-----~lg~~H--p~--~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~ 376 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKM---SS-----VFEDSN--VY--MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV 376 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHH---TT-----TBCTTS--HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred hhccCHHHHHHHHHHHHHHh---hC-----ccChhc--hH--HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 35699999999999999995 33 566443 22 45689999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cCCCCCcchHhhhccHH
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTD 376 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~~~~~~~~~~~l~nl~ 376 (441)
+||+|+.+|+|||.+|..||+|++| +.+|+|||+|++ ..|++||.|....+||.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAG------EKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHH------HHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999987 999999999995 67999999997776653
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=7.1e-21 Score=182.56 Aligned_cols=255 Identities=13% Similarity=0.063 Sum_probs=197.8
Q ss_pred HHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhhhhhhh
Q 013549 65 MINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENFKNSILG 143 (441)
Q Consensus 65 m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG-~y~eA~e~~~ral~i~~~~lg 143 (441)
+..++..+. ..|++++|+.++++++... |....++..+|.++..+| ++++|++.|++++.+.+..
T Consensus 59 ~~~~~~~~~----~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-- 124 (330)
T 3hym_B 59 LPVHIGTLV----ELNKANELFYLSHKLVDLY--------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-- 124 (330)
T ss_dssp HHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC--
T ss_pred HHHHHHHHH----HhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc--
Confidence 344555553 3579999999999999743 334567999999999999 9999999999998877653
Q ss_pred hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Q 013549 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG 223 (441)
Q Consensus 144 ~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~ 223 (441)
..++..++.++..+|++++|..++++++.+..... ......+.++..+|++++|+.+|++++...+
T Consensus 125 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 190 (330)
T 3hym_B 125 --GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH------------LPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190 (330)
T ss_dssp --THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 23678899999999999999999999876642211 1122367888899999999999999999766
Q ss_pred CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 224 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 303 (441)
Q Consensus 224 ~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~ 303 (441)
....+...+|.++..+|+|++|+.+|++++.+...... .... +. ...++.++|.+|..+|+|++|+.+|
T Consensus 191 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~------~~--~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN---EVTV------DK--WEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---SCTT------TT--CCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---cccc------cH--HHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 67778889999999999999999999999999532211 1100 11 1246789999999999999999999
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHH
Q 013549 304 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVA 379 (441)
Q Consensus 304 ~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~ 379 (441)
++++.+. |....++.++|.+|..+|++++| ...|++++++. |+++ ....+++.++
T Consensus 260 ~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~----p~~~---~~~~~l~~~~ 314 (330)
T 3hym_B 260 RQALVLI--------PQNASTYSAIGYIHSLMGNFENA------VDYFHTALGLR----RDDT---FSVTMLGHCI 314 (330)
T ss_dssp HHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHH------HHHHHTTTTTC----SCCH---HHHHHHHHHH
T ss_pred HHHHhhC--------ccchHHHHHHHHHHHHhccHHHH------HHHHHHHHccC----CCch---HHHHHHHHHH
Confidence 9999872 44556789999999999999887 78888876552 3333 3444555555
No 31
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=2.4e-20 Score=186.41 Aligned_cols=249 Identities=14% Similarity=0.126 Sum_probs=197.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhh
Q 013549 112 LAMSTLLYESGNYVEAIEKLQKVENFKNSILGV--RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGA 189 (441)
Q Consensus 112 ~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~--~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~ 189 (441)
..+|.++..+|+|++|++.|++++.+.+..-.. ...++.+++.+|..+|++++|..++++++++........ .
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~ 181 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN-----I 181 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH-----H
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch-----H
Confidence 348999999999999999999999886653111 235788999999999999999999999999987765311 1
Q ss_pred hHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549 190 VNSRANAVKGLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS 263 (441)
Q Consensus 190 l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~ 263 (441)
....+....|.++..+|+|++|+.+|++++.. .+.. ..+..++|.+|..+|+|++|+.+|++|+++......
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-- 259 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-- 259 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--
Confidence 11233445788899999999999999999982 1112 245578899999999999999999999999643211
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhh
Q 013549 264 DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSA 343 (441)
Q Consensus 264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~ 343 (441)
. |. ...++.+||.+|..+|+|++|.++|++|+.+..+. ..|.....+.+||.+|..+|++
T Consensus 260 ---~-------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~----- 319 (383)
T 3ulq_A 260 ---L-------PS--LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDE----- 319 (383)
T ss_dssp ---G-------GG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCH-----
T ss_pred ---c-------hh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH-----
Confidence 0 11 24578999999999999999999999999999886 3455556688999999999985
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549 344 LLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 344 ~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
..+++|+++++.. ...+.......+++.++..+|+|++|+..+.
T Consensus 320 -----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 363 (383)
T 3ulq_A 320 -----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFL 363 (383)
T ss_dssp -----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3577888887653 4556677778899999999999998887763
No 32
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=2.2e-20 Score=195.46 Aligned_cols=271 Identities=13% Similarity=0.011 Sum_probs=217.4
Q ss_pred hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~ 138 (441)
|+.....+.++..+.+ .|+|++|+.+|++++... +++ ..+++.++.+|...|++++|++.+++++...
T Consensus 302 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFV----RSRFIDVLAITTKILEID-----PYN---LDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp GGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC-----TTC---CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHcC-----ccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 4556667778888743 689999999999999754 222 3458899999999999999999999998665
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 013549 139 NSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGL 218 (441)
Q Consensus 139 ~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~a 218 (441)
+.. ..+++.++.+|...|++++|..++++++++. +. . .......+.++..+|++++|+.+|+++
T Consensus 370 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 370 PEK----AVTWLAVGIYYLCVNKISEARRYFSKSSTMD----PQ---F-----GPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp TTS----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT---C-----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CC---C-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 3477889999999999999999999987542 11 0 112234577788999999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549 219 QEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 298 (441)
Q Consensus 219 L~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e 298 (441)
+...+....+...++.+|..+|++++|+.+|++++++ ... ...+++++|.+|..+|++++
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQY-----------------DPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCC-----------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----------------ChHHHHHHHHHHHHhCCHHH
Confidence 9966556667788999999999999999999999987 111 12457899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHH
Q 013549 299 AEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDI 377 (441)
Q Consensus 299 Ae~l~~rAL~i~e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~ 377 (441)
|+++|++++.+..+. +.+|. ...++.++|.+|..+|++++| +..|++++++. |++ .....+++.
T Consensus 494 A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~~~~~----p~~---~~~~~~l~~ 558 (597)
T 2xpi_A 494 AINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAA------IDALNQGLLLS----TND---ANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS----SCC---HHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC----CCC---hHHHHHHHH
Confidence 999999999987754 34566 489999999999999999987 89999998873 233 346678889
Q ss_pred HHHHhccHHHHHHHh
Q 013549 378 VALARGGYAEALSVQ 392 (441)
Q Consensus 378 ~~~~~g~yaeal~~~ 392 (441)
++..+|++++|+...
T Consensus 559 ~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 559 VYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999998887765
No 33
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.87 E-value=6.1e-22 Score=208.68 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=120.5
Q ss_pred HHHcCCHHHHHHHHHhhhh-----ccCCch---HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 202 ELAHGNLESAESFFKGLQE-----EEGCTG---SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 202 ~~~qG~y~eAe~l~~~aL~-----~~~~~~---~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
+..||+|++|+++|+++|+ -++.|+ .+..++|.+|..||+|++|+++|++||+|+++ .+|+.|
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~--------~lG~~H- 389 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK--------LYHHNN- 389 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HSCTTC-
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--------HcCCCC-
Confidence 3479999999999999998 233343 44578899999999999999999999999755 445322
Q ss_pred chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549 274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 353 (441)
Q Consensus 274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r 353 (441)
|+ ++.+++|||.+|..||+|++|+++|+|||+|+++++|++||.|+.++++|+..+..+|+|++| |.+|++
T Consensus 390 -p~--~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a------e~~~~~ 460 (490)
T 3n71_A 390 -AQ--LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN------EFMYHK 460 (490)
T ss_dssp -HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred -HH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 32 455789999999999999999999999999999999999999999999999999999999887 999999
Q ss_pred HHHHh
Q 013549 354 ALEFL 358 (441)
Q Consensus 354 AL~i~ 358 (441)
+.+-.
T Consensus 461 ~~~~~ 465 (490)
T 3n71_A 461 MREAA 465 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97754
No 34
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=4.8e-20 Score=189.74 Aligned_cols=277 Identities=13% Similarity=0.107 Sum_probs=203.6
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
+.+..+..+.+.|..+.+ .|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|+..|++++.
T Consensus 20 ~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 87 (537)
T 3fp2_A 20 QRQAYAVQLKNRGNHFFT----AKNFNEAIKYYQYAIELD--------PNEPVFYSNISACYISTGDLEKVIEFTTKALE 87 (537)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTCCC-CHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345578888999999843 689999999999999854 34467899999999999999999999999998
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHH------------------------HHHhcCC-----------
Q 013549 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQ------------------------LCEKHKP----------- 181 (441)
Q Consensus 137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~------------------------i~~~~~~----------- 181 (441)
+.+.. ..++..++.++..+|++++|...++ .+. .+.....
T Consensus 88 ~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 162 (537)
T 3fp2_A 88 IKPDH----SKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162 (537)
T ss_dssp HCTTC----HHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCC
T ss_pred cCCch----HHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 87653 2467889999999999999988763 221 1110000
Q ss_pred --------------------------------------------------------------------CcchhhhhhH--
Q 013549 182 --------------------------------------------------------------------ENYKTYGAVN-- 191 (441)
Q Consensus 182 --------------------------------------------------------------------~~~~~~~~l~-- 191 (441)
..+.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 242 (537)
T 3fp2_A 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242 (537)
T ss_dssp CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHH
Confidence 0000000000
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549 192 SRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 271 (441)
Q Consensus 192 ~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~ 271 (441)
..+....|..+..+|++++|+.+|++++...+. ..+...+|.++..+|+|++|+.+|++++++. ..
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 308 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN---PE---------- 308 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---TT----------
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC---CC----------
Confidence 011123455666788888888888888885554 5666778888888889999999998888771 11
Q ss_pred ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549 272 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLY 351 (441)
Q Consensus 272 ~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly 351 (441)
...++.++|.+|..+|+|++|+++|++++.+ .++++ .++.++|.+|..+|++++| ...|
T Consensus 309 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~---~~~~~la~~~~~~g~~~~A------~~~~ 367 (537)
T 3fp2_A 309 -------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-----NPENV---YPYIQLACLLYKQGKFTES------EAFF 367 (537)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCS---HHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHH------HHHH
Confidence 1235789999999999999999999999885 34444 5688899999999999887 8889
Q ss_pred HHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 352 RRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 352 ~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
++++++. |+++ ....+++.++..+|+|++|+...
T Consensus 368 ~~~~~~~----~~~~---~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 368 NETKLKF----PTLP---EVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HHHHHHC----TTCT---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC----CCCh---HHHHHHHHHHHHhCCHHHHHHHH
Confidence 9998873 3333 35567889999999999988765
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.2e-20 Score=170.27 Aligned_cols=234 Identities=12% Similarity=0.019 Sum_probs=194.9
Q ss_pred hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh
Q 013549 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~ 138 (441)
++.+..+.++|..+. ..|+|++|+.+|++++.+. ++ ..++.++|.+|..+|+|++|++.+++++.+.
T Consensus 2 ~~~a~~~~~~g~~~~----~~~~~~~A~~~~~~a~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 68 (258)
T 3uq3_A 2 GSMADKEKAEGNKFY----KARQFDEAIEHYNKAWELH------KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQG 68 (258)
T ss_dssp HHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHS------CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHhh------cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 456788889999984 3689999999999999865 12 4679999999999999999999999999988
Q ss_pred hhhhhh---hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 139 NSILGV---RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF 215 (441)
Q Consensus 139 ~~~lg~---~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~ 215 (441)
+..... ....+..++.+|..+|++++|..++++++.+... +.++...|++++|...|
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------------ADILTKLRNAEKELKKA 128 (258)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------------hHHHHHHhHHHHHHHHH
Confidence 753111 1357888999999999999999999998754311 23356789999999999
Q ss_pred HhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC
Q 013549 216 KGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN 295 (441)
Q Consensus 216 ~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~ 295 (441)
++++...+....+...+|.++..+|+|++|+.+|++++++. .. ...++.++|.+|..+|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~-----------------~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PE-----------------DARGYSNRAAALAKLMS 188 (258)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---cc-----------------cHHHHHHHHHHHHHhCC
Confidence 99999666566777889999999999999999999999881 11 12457899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 296 FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
|++|+.+|++++.+ .|....++.++|.+|..+|++++| ...|++++++..
T Consensus 189 ~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~ 238 (258)
T 3uq3_A 189 FPEAIADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASA------LETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHhCh
Confidence 99999999999986 355567789999999999999987 899999999974
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=3.2e-20 Score=174.49 Aligned_cols=250 Identities=11% Similarity=0.079 Sum_probs=199.2
Q ss_pred HHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh
Q 013549 64 QMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG 143 (441)
Q Consensus 64 ~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg 143 (441)
.+.++|..+. ..|+|++|+.+|++++.+. +++ ..++.++|.+|..+|+|++|++.+++++... ....
T Consensus 5 ~~~~~a~~~~----~~~~~~~A~~~~~~~l~~~-----p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 71 (272)
T 3u4t_A 5 VEFRYADFLF----KNNNYAEAIEVFNKLEAKK-----YNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATK 71 (272)
T ss_dssp CHHHHHHHHH----TTTCHHHHHHHHHHHHHTT-----CCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTT
T ss_pred HHHHHHHHHH----HhcCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-Cchh
Confidence 3567777773 4689999999999999864 223 3379999999999999999999999998833 2222
Q ss_pred hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Q 013549 144 VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG 223 (441)
Q Consensus 144 ~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~ 223 (441)
....++.+++.+|..+|++++|..++++++++..... ......|.++..+|+|++|+.+|++++...+
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL------------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH------------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence 2244678999999999999999999999986532111 1223468888899999999999999999766
Q ss_pred CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC---HHHHH
Q 013549 224 CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN---FGDAE 300 (441)
Q Consensus 224 ~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~---y~eAe 300 (441)
....+..++|......++|++|+..|++++++. .. ...++.++|.++..+|+ +++|.
T Consensus 140 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~-----------------~~~~~~~~~~~~~~~~~~~~~~~A~ 199 (272)
T 3u4t_A 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK---PN-----------------IYIGYLWRARANAAQDPDTKQGLAK 199 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-----------------CHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cc-----------------chHHHHHHHHHHHHcCcchhhHHHH
Confidence 677778888855555679999999999999981 11 12457899999999999 99999
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcch
Q 013549 301 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV 368 (441)
Q Consensus 301 ~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~ 368 (441)
+.|++++.+.++.-.++.+....++.+||.+|..+|++++| ...|++++++. |+++..
T Consensus 200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~al~~~----p~~~~a 257 (272)
T 3u4t_A 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA------DAAWKNILALD----PTNKKA 257 (272)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhcC----ccHHHH
Confidence 99999999998766555455778999999999999999987 89999999873 455543
No 37
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.86 E-value=3.3e-20 Score=173.26 Aligned_cols=252 Identities=15% Similarity=0.106 Sum_probs=193.6
Q ss_pred HHHcCChHHHHHHHHHHHHhhhhhhhh----hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhH
Q 013549 118 LYESGNYVEAIEKLQKVENFKNSILGV----RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSR 193 (441)
Q Consensus 118 ~~~qG~y~eA~e~~~ral~i~~~~lg~----~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~ 193 (441)
....|++++|+.+|++++.+....++. ...++.+++.+|..+|++++|..++++++++.....+... .....
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~ 86 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH----PAVAA 86 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC----HHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc----hHHHH
Confidence 457899999999999999998776532 3457889999999999999999999999999876632111 11123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhc--------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549 194 ANAVKGLVELAHGNLESAESFFKGLQEE--------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 265 (441)
Q Consensus 194 a~al~gl~~~~qG~y~eAe~l~~~aL~~--------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~ 265 (441)
.....|.++..+|+|++|+.+|++++.. .+....+..++|.++..+|+|++|+.+|++++++.....+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 162 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG---- 162 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----
Confidence 3345688888999999999999999982 1223455678899999999999999999999999654322
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549 266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL-FGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 344 (441)
Q Consensus 266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~-lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~ 344 (441)
. .+|. ...++.+||.+|..+|+|++|+++|++++.+..+. ++..+|.....+..++..+..++.+..+
T Consensus 163 ----~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 231 (283)
T 3edt_B 163 ----P--DDPN--VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS--- 231 (283)
T ss_dssp ----T--TCHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----
T ss_pred ----C--CCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHH---
Confidence 0 0121 34578899999999999999999999999996665 8888999999999999999988887664
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 345 LIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 345 ~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
..|.++....+....++|.....+.+++.++..+|+|++|+...
T Consensus 232 ----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 275 (283)
T 3edt_B 232 ----APYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275 (283)
T ss_dssp ---------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56778877777777888998889999999999999999888765
No 38
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.86 E-value=1e-21 Score=203.68 Aligned_cols=129 Identities=18% Similarity=0.132 Sum_probs=114.9
Q ss_pred HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
.-+..+|+|++|+++|+++|+|. +. .+|++|. . ++.+++|||.+|..||+|++|+++|+|+|.|++++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~---~~-----~lg~~h~--~--~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSN---SE-----RLPDINI--Y--QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCS---SC-----CCCTTSH--H--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhc---cC-----cCCccch--H--HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 34668999999999999999993 44 6774442 2 56689999999999999999999999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh-cCCCCCcchHhhhccHHHHHH
Q 013549 314 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK-APPLESEGVETKVDRTDIVAL 380 (441)
Q Consensus 314 lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~-~~~~~~~~~~~~l~nl~~~~~ 380 (441)
+|++||+|+.+++|||.+|..||+|++| +.+|+||++|++ ..|++||.|+..++|++.+..
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA------~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQA------MKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 999999999995 679999999999988877753
No 39
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=2.8e-19 Score=183.99 Aligned_cols=297 Identities=14% Similarity=0.114 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh-
Q 013549 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN- 139 (441)
Q Consensus 61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~- 139 (441)
....+.++|.++. ..|+|++|+.+|++++.+. |....++..+|.+|..+|+|++|+..|+ ++.+.+
T Consensus 58 ~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~ 124 (537)
T 3fp2_A 58 EPVFYSNISACYI----STGDLEKVIEFTTKALEIK--------PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGD 124 (537)
T ss_dssp CHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC----
T ss_pred CcHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCC
Confidence 3466788888874 3689999999999999853 3445789999999999999999998774 331111
Q ss_pred --------------------------------------------------------------------------------
Q 013549 140 -------------------------------------------------------------------------------- 139 (441)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (441)
T Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 204 (537)
T 3fp2_A 125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204 (537)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------hhhhh----------hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 140 ----------------------SILGV----------RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 140 ----------------------~~lg~----------~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
..+.. ...++..++.++..+|++++|..++++++.+. +.
T Consensus 205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----~~----- 275 (537)
T 3fp2_A 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH----PT----- 275 (537)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC-----
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----CC-----
Confidence 00000 01245566777888888888888888886542 11
Q ss_pred hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549 188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 267 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~ 267 (441)
.......|.++..+|+|++|..+|++++...+....+...+|.++..+|+|++|+..|++++.+ ... .
T Consensus 276 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~-----~ 343 (537)
T 3fp2_A 276 ----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL---NPE-----N 343 (537)
T ss_dssp ----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----C
T ss_pred ----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-----C
Confidence 1122345777788999999999999999976667778888999999999999999999999987 111 1
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 013549 268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 347 (441)
Q Consensus 268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~A 347 (441)
..++.++|.+|..+|+|++|+.+|++++.+ +|....++.++|.+|..+|++++|
T Consensus 344 ------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A------ 397 (537)
T 3fp2_A 344 ------------VYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTA------ 397 (537)
T ss_dssp ------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHH------
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHH------
Confidence 135789999999999999999999999987 344456788899999999999987
Q ss_pred HHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHh----------ccHHHHHHHhhchhh----HHHHHHHHHHHHHhcc
Q 013549 348 EGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR----------GGYAEALSVQQNRKD----EGERMKRWAEAAWRNR 413 (441)
Q Consensus 348 e~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~----------g~yaeal~~~~~r~~----eae~~~~~a~~~~~~~ 413 (441)
...|++++++.......+. ....+.+++.++..+ |+|++|+.....-.. ..+.+...+..+++.+
T Consensus 398 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHV-GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSS-TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcchhhHH-HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 8888888888633211111 122234556666666 777777765532211 1344555555555555
Q ss_pred ChhHH
Q 013549 414 RVSLA 418 (441)
Q Consensus 414 r~~~~ 418 (441)
++..|
T Consensus 477 ~~~~A 481 (537)
T 3fp2_A 477 KIDEA 481 (537)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 54443
No 40
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.86 E-value=1.7e-19 Score=180.40 Aligned_cols=253 Identities=13% Similarity=0.075 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg--~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
.+..+|..+..+|+|++|++.|++++.+.+.... ....++.+++.+|..+|++++|..++++++++........
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---- 178 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS---- 178 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH----
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch----
Confidence 5667899999999999999999999988765321 1245788999999999999999999999999987755211
Q ss_pred hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCC---chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEE---EGC---TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~---~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
..........|.++..+|+|++|+.+|++++.. .+. ...+..++|.+|..+|+|++|+.+|++|+++......
T Consensus 179 -~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 179 -IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred -hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 111233345788899999999999999999981 111 2345578899999999999999999999999643221
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
|. ...++.+||.+|..+|++++|.+++++|+.+.++. ..|.....+.+|+.+|..+|+.
T Consensus 258 -------------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~--- 316 (378)
T 3q15_A 258 -------------DL--LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDE--- 316 (378)
T ss_dssp -------------GG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCH---
T ss_pred -------------hh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH---
Confidence 22 24578999999999999999999999999998764 2355555789999999988873
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhchh
Q 013549 342 SALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNRK 396 (441)
Q Consensus 342 ~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r~ 396 (441)
..+.+|+++++. ....+++.....+++.++..+|+|++|+..+..-.
T Consensus 317 -------~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 317 -------RKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp -------HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 457778887764 23456666677789999999999999998874433
No 41
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.3e-20 Score=186.26 Aligned_cols=282 Identities=13% Similarity=0.062 Sum_probs=219.4
Q ss_pred hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCC--CCC----chhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 013549 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDG--QLA----ESWRGISLLAMSTLLYESGNYVEAIEKLQ 132 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~--g~~----h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ 132 (441)
|+.+......+..+... ...|+|++|+.+|++++...+... .++ .|..+.++..+|.++..+|+|++|+..|+
T Consensus 183 ~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 261 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYK-RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK 261 (514)
T ss_dssp SCHHHHHHHHHHHHHSS-CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455555666654211 136899999999999998432211 233 38899999999999999999999999999
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHH
Q 013549 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAE 212 (441)
Q Consensus 133 ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe 212 (441)
+++...+. ...+..++.+|..+|++++|..++++++.+. +.. .......+.++..+|++++|.
T Consensus 262 ~~l~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~--------~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 262 KAIELFPR-----VNSYIYMALIMADRNDSTEYYNYFDKALKLD----SNN--------SSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHHHCCC-----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC----TTC--------THHHHHHHHHHHHTTCTTHHH
T ss_pred HHHhhCcc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC----cCC--------HHHHHHHHHHHHHhCCHHHHH
Confidence 99988755 3477889999999999999999999886432 111 112234677888999999999
Q ss_pred HHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 013549 213 SFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 292 (441)
Q Consensus 213 ~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~ 292 (441)
..|++++...+....+...+|.++..+|++++|+.+|++++++. .. . ..++.++|.+|..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-----~------------~~~~~~la~~~~~ 384 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---PE-----A------------PEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---TT-----C------------SHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cc-----C------------HHHHHHHHHHHHH
Confidence 99999999666666778889999999999999999999999871 11 1 1357899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH---hhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549 293 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN---KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 369 (441)
Q Consensus 293 qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~---qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~ 369 (441)
+|+|++|+.+|++++.+.... ++......++.++|.+|.. +|++++| ...|++++++. +++ .
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A------~~~~~~a~~~~----~~~---~ 449 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEA------TNLLEKASKLD----PRS---E 449 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHH------HHHHHHHHHHC----TTC---H
T ss_pred CCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHH------HHHHHHHHHhC----ccc---H
Confidence 999999999999999875432 1111224589999999999 9999987 89999998873 222 3
Q ss_pred hhhccHHHHHHHhccHHHHHHHhh
Q 013549 370 TKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 370 ~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
....+++.++..+|+|++|+....
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 456689999999999999988763
No 42
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=5.5e-19 Score=175.12 Aligned_cols=264 Identities=14% Similarity=0.113 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
..+..+.+++..+. ..|+|++|+.++++++.+..... +....+.+++++|.++..+|+|++|++.|++++.+.+
T Consensus 51 ~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 124 (373)
T 1hz4_A 51 SRIVATSVLGEVLH----CKGELTRSLALMQQTEQMARQHD--VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 124 (373)
T ss_dssp HHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35566778888873 36899999999999999887653 4557789999999999999999999999999999887
Q ss_pred hhhhh----hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 140 SILGV----RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF 215 (441)
Q Consensus 140 ~~lg~----~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~ 215 (441)
...+. ....+.+++.++..+|++++|..++++++.+.....+. . ........+.++..+|++++|..++
T Consensus 125 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~-~~~~~~~la~~~~~~g~~~~A~~~l 197 (373)
T 1hz4_A 125 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ------Q-QLQCLAMLIQCSLARGDLDNARSQL 197 (373)
T ss_dssp HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG------G-GHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH------H-HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 64221 23467789999999999999999999999887654421 1 1122334677888999999999999
Q ss_pred Hhhhhc--c-CCc-hHHHH---HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHH
Q 013549 216 KGLQEE--E-GCT-GSAAL---SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ 288 (441)
Q Consensus 216 ~~aL~~--~-~~~-~~~a~---~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ 288 (441)
++++.. . ... ..... ..+.++..+|++++|..++++++.+ ..+ .+. .....+.++|.
T Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~---~~~----------~~~~~~~~la~ 261 (373)
T 1hz4_A 198 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFA---NNH----------FLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCT---TCG----------GGHHHHHHHHH
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCC---cch----------hhHHHHHHHHH
Confidence 999872 1 111 11111 3455688999999999999998865 111 000 01224679999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 289 LEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 289 ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
++..+|++++|.+++++++.+.++ .| .++....++..+|.+|..+|++++| ...|++++++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~-~~-~~~~~~~~~~~la~~~~~~g~~~~A------~~~l~~al~~~~~ 325 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARS-LR-LMSDLNRNLLLLNQLYWQAGRKSDA------QRVLLDALKLANR 325 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TT-CHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHh-Cc-chhhHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHhcc
Confidence 999999999999999999999987 33 2456667999999999999999887 8999999999753
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.85 E-value=2.5e-20 Score=173.44 Aligned_cols=196 Identities=19% Similarity=0.123 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
+..+.++|.++..+|+|++|+..|++++.+.+.. ..++.+++.++..+|++++|...+++++++. |..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~---- 72 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVART----PRY---- 72 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCc----
Confidence 4578999999999999999999999999887654 2478899999999999999999999997553 211
Q ss_pred hhhHhHHHHHHHHHHHHc-----------CCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549 188 GAVNSRANAVKGLVELAH-----------GNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVL 256 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~~q-----------G~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~ 256 (441)
..+....|.++..+ |++++|+..|++++...+....+..++|.++..+|++++|+..|++|+++
T Consensus 73 ----~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 147 (217)
T 2pl2_A 73 ----LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL- 147 (217)
T ss_dssp ----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ----HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-
Confidence 11223457777788 99999999999999977777788899999999999999999999999999
Q ss_pred HhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549 257 AEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 336 (441)
Q Consensus 257 ~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG 336 (441)
. . . ..++.+||.+|..+|+|++|+..|++++.+ +|+-...+.++|.+|..+|
T Consensus 148 --~-~-----~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 148 --E-D-----T------------PEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKG 199 (217)
T ss_dssp --C-C-----C------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC--
T ss_pred --c-c-----c------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcc
Confidence 2 2 1 235789999999999999999999999986 4666678899999999999
Q ss_pred chhhhhhhHHHHHHHHHH
Q 013549 337 MQEHSSALLIQEGLYRRA 354 (441)
Q Consensus 337 ~~eeA~~~~~Ae~ly~rA 354 (441)
++++| ...|+++
T Consensus 200 ~~~~A------~~~~~~~ 211 (217)
T 2pl2_A 200 KAEEA------ARAAALE 211 (217)
T ss_dssp ------------------
T ss_pred CHHHH------HHHHHHH
Confidence 99887 5555554
No 44
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.8e-19 Score=180.61 Aligned_cols=265 Identities=14% Similarity=0.094 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhhhhhh----------hhhHHHHHHHHHHHHhcCCcchhHHHHHHHH
Q 013549 107 RGISLLAMSTLLYE---SGNYVEAIEKLQKVENFKNSIL----------GVRVAAMEALAGLYLQLGQDDTSSVVADKCL 173 (441)
Q Consensus 107 ~a~~l~nLa~l~~~---qG~y~eA~e~~~ral~i~~~~l----------g~~~~al~~La~l~~~~G~~~~A~~l~~~~L 173 (441)
....+..+|..+.. +|+|++|++.|++++...+..+ .....++..++.++..+|++++|..++++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 264 (514)
T 2gw1_A 185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264 (514)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 37777888888776 9999999999999998332211 1224577889999999999999999999887
Q ss_pred HHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHH
Q 013549 174 QLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVI 253 (441)
Q Consensus 174 ~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL 253 (441)
.+. +. .......+.++..+|++++|..+|++++...+....+...+|.++..+|++++|+..|++++
T Consensus 265 ~~~----~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 265 ELF----PR---------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHC----CC---------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred hhC----cc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 542 11 12223457788899999999999999999766667778889999999999999999999999
Q ss_pred HHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH
Q 013549 254 EVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR 333 (441)
Q Consensus 254 ~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~ 333 (441)
++ ... . ..++.++|.+|..+|+|++|+.+|++++.+ +|....++.++|.+|.
T Consensus 332 ~~---~~~-----~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 332 EL---DPE-----N------------IFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEAPEVPNFFAEILT 383 (514)
T ss_dssp HT---CSS-----C------------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHH
T ss_pred Hh---Chh-----h------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccCHHHHHHHHHHHH
Confidence 87 111 1 135789999999999999999999999976 3334467899999999
Q ss_pred HhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH---hccHHHHHHHhhchhh----HHHHHHHHH
Q 013549 334 NKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA---RGGYAEALSVQQNRKD----EGERMKRWA 406 (441)
Q Consensus 334 ~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~---~g~yaeal~~~~~r~~----eae~~~~~a 406 (441)
.+|++++| ...|++++++.... ++.......+.+++.++.. .|+|++|+.....-.. ..+.+...+
T Consensus 384 ~~~~~~~A------~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 456 (514)
T 2gw1_A 384 DKNDFDKA------LKQYDLAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456 (514)
T ss_dssp HTTCHHHH------HHHHHHHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCHHHH------HHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 99999987 89999999986432 1212223467789999999 9999999887633221 145566677
Q ss_pred HHHHhccChhHHH
Q 013549 407 EAAWRNRRVSLAE 419 (441)
Q Consensus 407 ~~~~~~~r~~~~~ 419 (441)
..+++.+++..|.
T Consensus 457 ~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 457 QMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHhcCHHHHH
Confidence 7777777766554
No 45
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.84 E-value=1.3e-18 Score=170.16 Aligned_cols=239 Identities=11% Similarity=0.056 Sum_probs=162.5
Q ss_pred ChhhHHHHHHHHHHhhhcccc-CC--CCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---HHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPS-DG--QLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEA 151 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~-~~--g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---~~al~~ 151 (441)
+.|+|++|+.+++++.....+ .+ +++....+..+...|.+|..+|+|++|++.|++++.+.+.. +.. ..++++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~ 81 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN-RSLFHAAKAFEQ 81 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 468999999999999886543 12 35666667777777777777777777777777776665432 211 112233
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCC---c
Q 013549 152 LAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE---EGC---T 225 (441)
Q Consensus 152 La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~---~ 225 (441)
.|.++..+|+|++|+.+|++++.. ... .
T Consensus 82 ----------------------------------------------lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 82 ----------------------------------------------AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp ----------------------------------------------HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred ----------------------------------------------HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344555666666666666666651 111 1
Q ss_pred hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013549 226 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 305 (441)
Q Consensus 226 ~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~r 305 (441)
..+..++|.+|.. |+|++|+.+|++|+++...... + .....+++++|.+|..+|+|++|+++|++
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~-------------~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER-------------L-RQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC-------------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC-------------h-hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2344677888888 9999999999999999643211 0 11245688999999999999999999999
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccH
Q 013549 306 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGY 385 (441)
Q Consensus 306 AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~y 385 (441)
++.+..+.- .++.++.++.++|.+|..+|++++| ...|++++ +. +..........+.++...+ ..|+.
T Consensus 181 al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A------~~~~~~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d~ 248 (307)
T 2ifu_A 181 EKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAA------QKCVRESY-SI--PGFSGSEDCAALEDLLQAY-DEQDE 248 (307)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHT-TS--TTSTTSHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHh-CC--CCCCCCHHHHHHHHHHHHH-HhcCH
Confidence 999998753 2667788999999999999999887 88999998 43 2111222233444555444 34555
Q ss_pred HHHHH
Q 013549 386 AEALS 390 (441)
Q Consensus 386 aeal~ 390 (441)
++...
T Consensus 249 ~~~~~ 253 (307)
T 2ifu_A 249 EQLLR 253 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.8e-18 Score=159.95 Aligned_cols=230 Identities=16% Similarity=0.092 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (441)
Q Consensus 105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~ 184 (441)
++.+..+.++|..+..+|+|++|++.|++++.+. .. ..++..++.+|..+|++++|..++++++++.....+..
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~- 75 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY- 75 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH-
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch-
Confidence 4578899999999999999999999999998886 32 24788899999999999999999999998875543211
Q ss_pred hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCC
Q 013549 185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD 264 (441)
Q Consensus 185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~ 264 (441)
..........|.++..+|++++|..+|++++...+. +.++...|++++|...+++++.+.
T Consensus 76 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~-------- 135 (258)
T 3uq3_A 76 ----KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVN-------- 135 (258)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred ----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcC--------
Confidence 111223345678888999999999999999995433 346778899999999999998761
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549 265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 344 (441)
Q Consensus 265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~ 344 (441)
|. ...++.++|.+|..+|+|++|+.+|++++.+ +|....++.++|.+|..+|++++|
T Consensus 136 ----------~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A--- 192 (258)
T 3uq3_A 136 ----------PE--KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEA--- 192 (258)
T ss_dssp ----------HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH---
T ss_pred ----------cc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHH---
Confidence 11 2346789999999999999999999999986 355567899999999999999987
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549 345 LIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 345 ~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
...|++++++. |+......+++.++..+|++++|+....
T Consensus 193 ---~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 193 ---IADCNKAIEKD-------PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp ---HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhC-------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 89999998873 2223466789999999999998887653
No 47
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=1.2e-19 Score=173.72 Aligned_cols=248 Identities=10% Similarity=0.065 Sum_probs=188.7
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
+..+.++|..+.+ .|+|++|+.++++++.+. |....++.++|.+|..+|+|++|++.|++++.+.+..
T Consensus 55 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 55 EEAWRSLGLTQAE----NEKDGLAIIALNHARMLD--------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 3445667777733 589999999999999863 3346789999999999999999999999998876654
Q ss_pred hhhhHH---------HHHHH-HH-HHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549 142 LGVRVA---------AMEAL-AG-LYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (441)
Q Consensus 142 lg~~~~---------al~~L-a~-l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e 210 (441)
...... ....+ +. ++..+|++++|..++++++.+... . .......+.++..+|++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~--------~~~~~~la~~~~~~~~~~~ 190 (327)
T 3cv0_A 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN----D--------AQLHASLGVLYNLSNNYDS 190 (327)
T ss_dssp TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT----C--------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC----C--------HHHHHHHHHHHHHhccHHH
Confidence 221100 11122 33 377788899999888888754211 0 1222346778889999999
Q ss_pred HHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549 211 AESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 290 (441)
Q Consensus 211 Ae~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly 290 (441)
|..+|++++...+....+...+|.++..+|++++|+.+|++++++. .. ...++.++|.+|
T Consensus 191 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~-----------------~~~~~~~l~~~~ 250 (327)
T 3cv0_A 191 AAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN---PG-----------------YVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-----------------CHHHHHHHHHHH
Confidence 9999999999766667778889999999999999999999999871 11 123578999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCCch----HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 291 AHMGNFGDAEEILTRTLTKTEELFGSHHPK----VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~----va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
..+|+|++|.++|++++.+.....++.+.. ...++.++|.+|..+|++++| ...+++++++..
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~~l~~~~ 317 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV------ELTYAQNVEPFA 317 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH------HHHTTCCSHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHhcc
Confidence 999999999999999999875543333322 678899999999999999987 888999998874
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.81 E-value=9.4e-18 Score=159.32 Aligned_cols=222 Identities=15% Similarity=0.207 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENF 137 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~----qG~y~eA~e~~~ral~i 137 (441)
+..+.++|..+. ..|+|++|+.+|++++. +.+ ..++.+||.+|.. +|++++|+..|++++++
T Consensus 6 ~~a~~~lg~~~~----~~~~~~~A~~~~~~a~~-------~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 6 PKELVGLGAKSY----KEKDFTQAKKYFEKACD-------LKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHH----hCCCHHHHHHHHHHHHH-------CCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 445677888873 35799999999999997 223 3679999999999 99999999999999876
Q ss_pred hhhhhhhhHHHHHHHHHHHHh----cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH----cCCHH
Q 013549 138 KNSILGVRVAAMEALAGLYLQ----LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA----HGNLE 209 (441)
Q Consensus 138 ~~~~lg~~~~al~~La~l~~~----~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~----qG~y~ 209 (441)
. ...++.+++.+|.. .+++++|..+++++++. .. ..+....|.++.. +|+++
T Consensus 72 ~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~-----------~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 72 N------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---KY-----------AEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TC-----------HHHHHHHHHHHHHCSSSCCCHH
T ss_pred C------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---CC-----------ccHHHHHHHHHHcCCCcccCHH
Confidence 4 23478899999999 99999999999998753 11 1122346778888 99999
Q ss_pred HHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHH
Q 013549 210 SAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 285 (441)
Q Consensus 210 eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~n 285 (441)
+|+.+|++++... ...+..++|.+|.. .|++++|+.+|++|++. + . ..++.+
T Consensus 132 ~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~-----~------------~~a~~~ 187 (273)
T 1ouv_A 132 KAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----K-----D------------SPGCFN 187 (273)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----C------------HHHHHH
T ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----C-----C------------HHHHHH
Confidence 9999999999854 44567888999998 99999999999999875 1 0 235789
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----hhchhhhhhhHHHHHHHHHHHHH
Q 013549 286 LGQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 286 Lg~ly~~----qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~----qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
||.+|.. +|++++|.++|++++++ | | ...+.+||.+|.. ++++++| ...|++|+++
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~---~--~~a~~~l~~~~~~g~~~~~~~~~A------~~~~~~a~~~ 251 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACEL-----E---N--GGGCFNLGAMQYNGEGVTRNEKQA------IENFKKGCKL 251 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHT-----T---C--HHHHHHHHHHHHTTSSSSCCSTTH------HHHHHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhC-----C---C--HHHHHHHHHHHHcCCCcccCHHHH------HHHHHHHHHc
Confidence 9999999 99999999999999975 2 2 5678999999999 9999887 8999999887
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=9.2e-18 Score=157.20 Aligned_cols=254 Identities=12% Similarity=0.037 Sum_probs=194.6
Q ss_pred cChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 013549 77 KSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLY 156 (441)
Q Consensus 77 ~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~ 156 (441)
..+|+|++|+.+|++++... ..+.|..+.++.++|.+|..+|+|++|+..|++++.+.+.. ..++.+++.+|
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~ 87 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYL 87 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHH
Confidence 46789999999999999863 23567899999999999999999999999999999886543 34788899999
Q ss_pred HhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549 157 LQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL 236 (441)
Q Consensus 157 ~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~ 236 (441)
..+|++++|..++++++.+.... ..+....|.++..+|+|++|..+|++++...+....... +..++
T Consensus 88 ~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~ 154 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELDPTY------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL-WLYLA 154 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCccc------------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH-HHHHH
Confidence 99999999999999998653111 112234677888999999999999999995544443322 33355
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
..+|++++|+.+|++++.. ... .. ...+++.++..++++++|...+++++.....
T Consensus 155 ~~~~~~~~A~~~~~~~~~~---~~~----~~--------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---- 209 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEK---SDK----EQ--------------WGWNIVEFYLGNISEQTLMERLKADATDNTS---- 209 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHH---SCC----CS--------------THHHHHHHHTTSSCHHHHHHHHHHHCCSHHH----
T ss_pred HHhcCHHHHHHHHHHHHhc---CCc----ch--------------HHHHHHHHHHHhcCHHHHHHHHHHHhccccc----
Confidence 6789999999999999987 111 11 1246888899999999999999999877654
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
..|....++.++|.+|..+|++++| ...|++++++. |++.. ..+.++...|+|.+|+...
T Consensus 210 ~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~----p~~~~------~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 210 LAEHLSETNFYLGKYYLSLGDLDSA------TALFKLAVANN----VHNFV------EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC----CTTCH------HHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHcCCHHHH------HHHHHHHHhCC----chhHH------HHHHHHHHHHHHHhhHHHH
Confidence 2355678999999999999999987 89999998762 22221 2355667778888887654
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=6.4e-19 Score=163.89 Aligned_cols=197 Identities=16% Similarity=0.115 Sum_probs=149.4
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
+....++|..+. ..|+|++|+..|++++.+ .|....++.++|.++..+|++++|+..|++++.+.+..
T Consensus 5 ~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 5 EQNPLRLGVQLY----ALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp CHHHHHHHHHHH----HTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 345677888873 368999999999999974 34456789999999999999999999999999988764
Q ss_pred hhhhHHHHHHHHHHHHhc-----------CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549 142 LGVRVAAMEALAGLYLQL-----------GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (441)
Q Consensus 142 lg~~~~al~~La~l~~~~-----------G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e 210 (441)
. .++.+++.++..+ |++++|...+++++++. |.. ..+....|.++..+|++++
T Consensus 73 ~----~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----P~~--------~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 73 L----GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN----PRY--------APLHLQRGLVYALLGERDK 136 (217)
T ss_dssp H----HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHHTTCHHH
T ss_pred H----HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC----ccc--------HHHHHHHHHHHHHcCChHH
Confidence 2 4678899999999 99999999999987652 211 1122356888899999999
Q ss_pred HHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549 211 AESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 290 (441)
Q Consensus 211 Ae~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly 290 (441)
|+..|++++... ..+.+..++|.+|..+|++++|+..|++++++ . |+ ...++.+||.+|
T Consensus 137 A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~---------------P~--~~~~~~~la~~~ 195 (217)
T 2pl2_A 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---A---------------PK--DLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---S---------------TT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C---------------CC--ChHHHHHHHHHH
Confidence 999999999965 67778889999999999999999999999998 1 11 124578999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 013549 291 AHMGNFGDAEEILTRTL 307 (441)
Q Consensus 291 ~~qG~y~eAe~l~~rAL 307 (441)
..+|++++|++.|+++-
T Consensus 196 ~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 196 LLKGKAEEAARAAALEH 212 (217)
T ss_dssp TC---------------
T ss_pred HHccCHHHHHHHHHHHh
Confidence 99999999999998764
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.81 E-value=2.1e-18 Score=162.05 Aligned_cols=237 Identities=16% Similarity=0.129 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG 188 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~ 188 (441)
..+.++|.++..+|+|++|+..|++++.+.+... .++..++.+|..+|++++|..++++++... ..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~------- 70 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSKV--NAT------- 70 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTT-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--Cch-------
Confidence 3578899999999999999999999998876532 267889999999999999999999987511 111
Q ss_pred hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCc
Q 013549 189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 268 (441)
Q Consensus 189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~l 268 (441)
.....+....|.++..+|+|++|+..|++++...+....+..++|.+|..+|+|++|+..|++++++ ...
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~------- 140 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTT------- 140 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCC-------
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCC-------
Confidence 1112223456888899999999999999999976667778889999999999999999999999876 111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc---hhhhhhhH
Q 013549 269 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM---QEHSSALL 345 (441)
Q Consensus 269 g~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~---~eeA~~~~ 345 (441)
...++.++|......++|++|+..|++++.+. |+....+.++|.+|..+|+ +++|
T Consensus 141 ----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~A---- 198 (272)
T 3u4t_A 141 ----------DPKVFYELGQAYYYNKEYVKADSSFVKVLELK--------PNIYIGYLWRARANAAQDPDTKQGLA---- 198 (272)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHSTTCSSCTT----
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCcchhhHHH----
Confidence 12467899944445569999999999999863 4446788899999999998 7776
Q ss_pred HHHHHHHHHHHHhhcCC-CCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 346 IQEGLYRRALEFLKAPP-LESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 346 ~Ae~ly~rAL~i~~~~~-~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
...|++++++.+..+ ++.+.......+++.++...|+|++|+...
T Consensus 199 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 199 --KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp --HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999999985422 222224456778999999999998887765
No 52
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.80 E-value=3e-18 Score=166.52 Aligned_cols=210 Identities=9% Similarity=0.032 Sum_probs=154.0
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR---VAAMEALAGL 155 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~---~~al~~La~l 155 (441)
.++|++|+.+|+++ |.+|..+|+|++|++.|++++.+.+.. +.. ..++++++.+
T Consensus 30 ~~~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~ 86 (292)
T 1qqe_A 30 SYKFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKA-GNEDEAGNTYVEAYKC 86 (292)
T ss_dssp HHHHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Confidence 34588888888877 667899999999999999999997653 332 4588999999
Q ss_pred HHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHc-CCHHHHHHHHHhhhhc---cCCc---hHH
Q 013549 156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAH-GNLESAESFFKGLQEE---EGCT---GSA 228 (441)
Q Consensus 156 ~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~q-G~y~eAe~l~~~aL~~---~~~~---~~~ 228 (441)
|..+|++++|..++++++.+....+.. ..........|.+|..+ |+|++|+.+|++++.. .... ..+
T Consensus 87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 160 (292)
T 1qqe_A 87 FKSGGNSVNAVDSLENAIQIFTHRGQF------RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 999999999999999999998665421 01112223467788886 9999999999999982 1112 234
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
..++|.++..+|+|++|+.+|++++++. .. .... ......++.++|.+|..+|++++|+..|++++.
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~---~~~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSS---MG---NRLS-------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---SS---CTTT-------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH---hc---CCcc-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999982 21 1100 000123678999999999999999999999998
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHH
Q 013549 309 KTEELFGSHHPKVGVVLTCLALMFR 333 (441)
Q Consensus 309 i~e~~lG~~HP~va~~l~nLa~ly~ 333 (441)
+...... ..-...+.+|+..|.
T Consensus 228 l~p~~~~---~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 228 EDPNFAD---SRESNFLKSLIDAVN 249 (292)
T ss_dssp C------------HHHHHHHHHHHH
T ss_pred hCCCCCC---cHHHHHHHHHHHHHH
Confidence 7654322 122456777888775
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=2.2e-18 Score=189.56 Aligned_cols=173 Identities=17% Similarity=0.135 Sum_probs=130.7
Q ss_pred CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (441)
Q Consensus 102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~ 181 (441)
..+|..+.+++|||.+|.++|+|++|++.|++++++.+... .++++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----~a~~n------------------------------ 48 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----AAHSN------------------------------ 48 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHH------------------------------
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHH------------------------------
Confidence 46889999999999999999999999999999987765421 12222
Q ss_pred CcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 182 ENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 182 ~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
+|.++..+|+|++|+..|+++++..+....+..++|.+|..+|+|++|+..|++||++ .-.
T Consensus 49 ----------------Lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~ 109 (723)
T 4gyw_A 49 ----------------LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---NPA 109 (723)
T ss_dssp ----------------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred ----------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 3555667788888888888888766666677778888888888888888888888877 111
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
...+++|||.+|..+|+|++|++.|++||++ .|+....+.|||.+|..+|++++|
T Consensus 110 -----------------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--------~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 110 -----------------FADAHSNLASIHKDSGNIPEAIASYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHhhhhhHHHhcccHHHH
Confidence 1245778888888888888888888888876 355556778888888888888776
Q ss_pred hhhHHHHHHHHHHHHHh
Q 013549 342 SALLIQEGLYRRALEFL 358 (441)
Q Consensus 342 ~~~~~Ae~ly~rAL~i~ 358 (441)
+..|++++++.
T Consensus 165 ------~~~~~kal~l~ 175 (723)
T 4gyw_A 165 ------DERMKKLVSIV 175 (723)
T ss_dssp ------HHHHHHHHHHH
T ss_pred ------HHHHHHHHHhC
Confidence 77788888775
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.79 E-value=1.4e-17 Score=148.57 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~ 186 (441)
++.++.+||.+|..+|+|++|++.|++++++.+... .++.+++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~-------------------------------- 47 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGK-------------------------------- 47 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH--------------------------------
Confidence 567899999999999999999999999987765432 23334444
Q ss_pred hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCC
Q 013549 187 YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMN 266 (441)
Q Consensus 187 ~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~ 266 (441)
++..+|++++|...+++++...+....+...++.++..++++++|...+++++.+. ..
T Consensus 48 --------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~---~~----- 105 (184)
T 3vtx_A 48 --------------TYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN---TV----- 105 (184)
T ss_dssp --------------HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----
T ss_pred --------------HHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc-----
Confidence 44455555566666655555444444455555556666666666666666666551 00
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHH
Q 013549 267 TLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLI 346 (441)
Q Consensus 267 ~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~ 346 (441)
...+...+|.+|..+|+|++|++.|++++.+ +|....++.++|.+|..+|++++|
T Consensus 106 ------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A----- 160 (184)
T 3vtx_A 106 ------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIRAYQSIGLAYEGKGLRDEA----- 160 (184)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH-----
T ss_pred ------------chHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhhHHHHHHHHHHHCCCHHHH-----
Confidence 0123455666666666666666666666654 344445566666666666666554
Q ss_pred HHHHHHHHHHH
Q 013549 347 QEGLYRRALEF 357 (441)
Q Consensus 347 Ae~ly~rAL~i 357 (441)
...|++||++
T Consensus 161 -~~~~~~al~~ 170 (184)
T 3vtx_A 161 -VKYFKKALEK 170 (184)
T ss_dssp -HHHHHHHHHT
T ss_pred -HHHHHHHHhC
Confidence 5566666554
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=7.6e-18 Score=171.89 Aligned_cols=223 Identities=10% Similarity=-0.023 Sum_probs=182.2
Q ss_pred chHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 013549 58 SNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN-YVEAIEKLQKVEN 136 (441)
Q Consensus 58 h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~-y~eA~e~~~ral~ 136 (441)
.|+.+..+.+++.++. ..|+|++|+.+|++++.+ +|.-..+++++|.+|..+|+ |++|+..|++++.
T Consensus 93 ~p~~~~a~~~lg~~~~----~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQ----RDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp CHHHHHHHHHHHHHHH----HTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHH----HCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 4677888888998873 368999999999999974 45557789999999999997 9999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK 216 (441)
Q Consensus 137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~ 216 (441)
+.+... .++++++.++..+|++++|...+++++++--.. ..+....|.++..+|+|++|+.+|+
T Consensus 161 l~P~~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------------~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 161 EQPKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------------YHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp HCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------------HHHHHHHHHHHHHcCChHHHHHHHH
Confidence 887642 478999999999999999999999998653111 1122346888889999999999999
Q ss_pred hhhhccCCchHHHHHHHHHHHH-ccChHHH-----HHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHH
Q 013549 217 GLQEEEGCTGSAALSYGEYLHA-TRNFLLA-----KKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLE 290 (441)
Q Consensus 217 ~aL~~~~~~~~~a~~~a~~~~~-qG~y~eA-----~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly 290 (441)
++|...+....+.+++|.++.. .|++++| +.+|++||.+ .- + ...+.++||.+|
T Consensus 225 ~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P---------------~--~~~a~~~l~~ll 284 (382)
T 2h6f_A 225 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VP---------------H--NESAWNYLKGIL 284 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---ST---------------T--CHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CC---------------C--CHHHHHHHHHHH
Confidence 9999877788888999999999 5666888 5999999998 11 1 124678999999
Q ss_pred HHcC--CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549 291 AHMG--NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337 (441)
Q Consensus 291 ~~qG--~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~ 337 (441)
..+| +|++|++.++++ +.+|+....+.+||.+|..+|+
T Consensus 285 ~~~g~~~~~~a~~~~~~~---------~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 285 QDRGLSKYPNLLNQLLDL---------QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TTTCGGGCHHHHHHHHHH---------TTTCCCHHHHHHHHHHHHHHHH
T ss_pred HccCccchHHHHHHHHHh---------ccCCCCHHHHHHHHHHHHHHhc
Confidence 9999 688887766543 5667777889999999999873
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=3.2e-17 Score=152.42 Aligned_cols=205 Identities=9% Similarity=-0.006 Sum_probs=140.1
Q ss_pred CchHH-HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 57 NSNPV-VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 57 ~h~~~-a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
..|.. +..+..+|..+. ..|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|++.|++++
T Consensus 31 ~~~~~~~~~~~~~a~~~~----~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYL----QRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp CCHHHHHHHHHHHHHHHH----HTTCTGGGHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH----HcCChHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444 777777888873 3578889999999988753 3346778888999999999999998888876
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 136 NFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF 215 (441)
Q Consensus 136 ~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~ 215 (441)
.+.+.. ...+. ..+.++..+|++++|+.+|
T Consensus 99 ~~~~~~----~~~~~----------------------------------------------~la~~~~~~g~~~~A~~~~ 128 (252)
T 2ho1_A 99 ASDSRN----ARVLN----------------------------------------------NYGGFLYEQKRYEEAYQRL 128 (252)
T ss_dssp HHCTTC----HHHHH----------------------------------------------HHHHHHHHTTCHHHHHHHH
T ss_pred HHCcCc----HHHHH----------------------------------------------HHHHHHHHHhHHHHHHHHH
Confidence 554321 01122 2344556677777777777
Q ss_pred Hhhhh--ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc
Q 013549 216 KGLQE--EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM 293 (441)
Q Consensus 216 ~~aL~--~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q 293 (441)
++++. ..+....+...+|.++..+|++++|+.+|++++++ ... ...++.+||.+|..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRN-----------------QPSVALEMADLLYKE 188 (252)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSC-----------------CHHHHHHHHHHHHHT
T ss_pred HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---Ccc-----------------cHHHHHHHHHHHHHc
Confidence 77777 44444555666777777888888888888887776 111 023456788888888
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 294 GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 294 G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
|++++|..+|++++.+ .|.....+..++.+|..+|++++| ...+++++++
T Consensus 189 g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~~~~ 238 (252)
T 2ho1_A 189 REYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTA------ASYGLQLKRL 238 (252)
T ss_dssp TCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHH------HHHHHHHHHH
Confidence 8888888888777652 233344566777788888887776 6777777665
No 57
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.77 E-value=1.1e-18 Score=181.33 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=97.5
Q ss_pred HcCCHHHHHHHHHhhhh-----ccCCch---HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch
Q 013549 204 AHGNLESAESFFKGLQE-----EEGCTG---SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL 275 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~-----~~~~~~---~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~ 275 (441)
.+|+|++|+++|+++|+ -++.|+ .+..++|.+|..||+|++|+++|+|+|+|+++. +|+.| |
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--------lG~~H--p 379 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH--------YPVYS--L 379 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------SCSSC--H
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH--------cCCCC--h
Confidence 47999999999999998 233444 445678999999999999999999999997553 45322 3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 013549 276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLA 329 (441)
Q Consensus 276 ~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa 329 (441)
+ ++.+++|||.+|..||+|++|+++|+|||+|+++++|++||.|+...+||.
T Consensus 380 ~--~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 380 N--VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp H--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 2 455789999999999999999999999999999999999999999999885
No 58
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.77 E-value=6.8e-18 Score=165.14 Aligned_cols=212 Identities=14% Similarity=0.105 Sum_probs=161.7
Q ss_pred HcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHH
Q 013549 120 ESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKG 199 (441)
Q Consensus 120 ~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~g 199 (441)
.+|+|.+|+++++++.+..+..+ +...+++++|..++.++ +
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~-------------~~~~~~~~~A~~~~~~a--------------------------~ 43 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF-------------MKWKPDYDSAASEYAKA--------------------------A 43 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS-------------SSCSCCHHHHHHHHHHH--------------------------H
T ss_pred ccchHHHHHHHHHHHHHHccccc-------------cCCCCCHHHHHHHHHHH--------------------------H
Confidence 46899999999999876554311 10136666666665543 4
Q ss_pred HHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 200 LVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 200 l~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
.++..+|+|++|...|++++.. .... ..+..++|.+|..+|+|++|+.+|++|+++..+...
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~------------ 111 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT------------ 111 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC------------
Confidence 4567899999999999999982 1112 234467789999999999999999999999643211
Q ss_pred chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549 274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 353 (441)
Q Consensus 274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r 353 (441)
+. ....++++||.+|.. |+|++|+++|++|+.+++.. | +++..+.+++|+|.+|..+|+|++| ...|++
T Consensus 112 -~~-~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~ 180 (307)
T 2ifu_A 112 -PD-TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E-RLRQAAELIGKASRLLVRQQKFDEA------AASLQK 180 (307)
T ss_dssp -HH-HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHH
T ss_pred -HH-HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHHHHHHcCCHHHH------HHHHHH
Confidence 11 134578899999999 99999999999999999873 2 3345678999999999999999987 899999
Q ss_pred HHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhc
Q 013549 354 ALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQN 394 (441)
Q Consensus 354 AL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~ 394 (441)
++++....+ ..+.....+.+++.+++.+|+|++|+..+..
T Consensus 181 al~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 181 EKSMYKEME-NYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999985432 2344555777899999999999999887643
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=1.1e-17 Score=153.85 Aligned_cols=213 Identities=14% Similarity=0.076 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
..+..+.++|..+. ..|+|++|+.+|++++.. .|....++.++|.+|...|+|++|+..|++++.+.+
T Consensus 21 ~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 88 (243)
T 2q7f_A 21 MASMTGGQQMGRGS----EFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88 (243)
T ss_dssp -------------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 45566677888773 468999999999999973 334477899999999999999999999999988765
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 013549 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQ 219 (441)
Q Consensus 140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL 219 (441)
.. ..++..++.++..+|++++|..++++++++.... .......+.++..+|++++|+.+|++++
T Consensus 89 ~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 89 SA----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------------GDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------------HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cc----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 43 3467889999999999999999999987653111 1122345777889999999999999999
Q ss_pred hccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549 220 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 299 (441)
Q Consensus 220 ~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA 299 (441)
...+....+...+|.++..+|++++|+.+|++++.+ ... ...++.++|.+|..+|++++|
T Consensus 153 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ---DPG-----------------HADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCTTHH
T ss_pred HhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Ccc-----------------cHHHHHHHHHHHHHccCHHHH
Confidence 966666677788999999999999999999999987 111 123578999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCchHHHHH
Q 013549 300 EEILTRTLTKTEELFGSHHPKVGVVL 325 (441)
Q Consensus 300 e~l~~rAL~i~e~~lG~~HP~va~~l 325 (441)
..+|++++.+ .+++|.+...+
T Consensus 213 ~~~~~~~~~~-----~p~~~~~~~~~ 233 (243)
T 2q7f_A 213 LEMLDKAIDI-----QPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHcc-----CcchHHHHHHH
Confidence 9999999985 45565544433
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=9.3e-17 Score=152.41 Aligned_cols=219 Identities=15% Similarity=0.147 Sum_probs=176.9
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh----cCCcchhHHHHHHHHHHHHhcC
Q 013549 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ----LGQDDTSSVVADKCLQLCEKHK 180 (441)
Q Consensus 105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~----~G~~~~A~~l~~~~L~i~~~~~ 180 (441)
|.-+.++..+|.+|..+|++++|++.|+++++... ..++.+++.+|.. ++++++|..++++++++- .
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 73 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y 73 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C
Confidence 34467899999999999999999999999987221 2478889999999 999999999999987441 1
Q ss_pred CCcchhhhhhHhHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHH
Q 013549 181 PENYKTYGAVNSRANAVKGLVELA----HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKV 252 (441)
Q Consensus 181 ~~~~~~~~~l~~~a~al~gl~~~~----qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rA 252 (441)
..+....|.++.. +|++++|+.+|++++... ...+..++|.+|.. +|++++|+.+|++|
T Consensus 74 -----------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 74 -----------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp -----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 1223356888888 999999999999999853 45677889999999 99999999999999
Q ss_pred HHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 013549 253 IEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCL 328 (441)
Q Consensus 253 L~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~----qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nL 328 (441)
++. + . ..++.+||.+|.. ++++++|.++|++|++. ++ ..++.+|
T Consensus 141 ~~~-----~-----~------------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l 188 (273)
T 1ouv_A 141 CDL-----N-----D------------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNA 188 (273)
T ss_dssp HHT-----T-----C------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHH
T ss_pred Hhc-----C-----c------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHH
Confidence 975 1 0 1357899999999 99999999999999975 23 3678999
Q ss_pred HHHHHH----hhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH----hccHHHHHHHh
Q 013549 329 ALMFRN----KAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQ 392 (441)
Q Consensus 329 a~ly~~----qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~----~g~yaeal~~~ 392 (441)
|.+|.. ++++++| ...|++++++ ++ .....+++.++.. .+++++|+..+
T Consensus 189 g~~~~~g~~~~~~~~~A------~~~~~~a~~~------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEA------LARYSKACEL------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp HHHHHHTCSSCCCHHHH------HHHHHHHHHT------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred HHHHHcCCCCCccHHHH------HHHHHHHHhC------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 999999 9999887 8899999876 11 3456688888887 77776666654
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=1.4e-17 Score=153.19 Aligned_cols=203 Identities=17% Similarity=0.156 Sum_probs=149.1
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (441)
Q Consensus 105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~ 184 (441)
...+..+..+|..+..+|+|++|+..|++++...+.. ..++..++.++..+|++++|..++++++++... .
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~- 90 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKALELDSS----A- 90 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----C-
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----c-
Confidence 3578899999999999999999999999998866543 346788999999999999999999998755211 0
Q ss_pred hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCC
Q 013549 185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD 264 (441)
Q Consensus 185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~ 264 (441)
.......+.++..+|++++|+.+|++++...+....+...+|.++..+|++++|+.+|++++++. ..
T Consensus 91 -------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~--- 157 (243)
T 2q7f_A 91 -------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---EN--- 157 (243)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TT---
T ss_pred -------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---Cc---
Confidence 11223457778899999999999999999666667778889999999999999999999999871 11
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhh
Q 013549 265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSAL 344 (441)
Q Consensus 265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~ 344 (441)
...++.++|.+|..+|+|++|+.+|++++.+ +|....++.++|.+|..+|++++|
T Consensus 158 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A--- 212 (243)
T 2q7f_A 158 --------------DTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKA--- 212 (243)
T ss_dssp --------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHH---
T ss_pred --------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHH---
Confidence 1235789999999999999999999999986 344456789999999999999987
Q ss_pred HHHHHHHHHHHHH
Q 013549 345 LIQEGLYRRALEF 357 (441)
Q Consensus 345 ~~Ae~ly~rAL~i 357 (441)
...|++++++
T Consensus 213 ---~~~~~~~~~~ 222 (243)
T 2q7f_A 213 ---LEMLDKAIDI 222 (243)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHcc
Confidence 8999999887
No 62
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=1.7e-17 Score=161.14 Aligned_cols=224 Identities=10% Similarity=-0.006 Sum_probs=164.7
Q ss_pred CCchHHHHHHHH-HHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 56 LNSNPVVLQMIN-YALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 56 ~~h~~~a~~m~n-~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
|+-++-|...-+ -+.++ + ..|+|++|+..|++++.+..+.. +++..+.+++++|.+|..+|+|++|++.|+++
T Consensus 30 ~~~~~~A~~~~~~a~~~~-~---~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A 103 (292)
T 1qqe_A 30 SYKFEEAADLCVQAATIY-R---LRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (292)
T ss_dssp HHHHHHHHHHHHHHHHHH-H---HTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHH-H---HcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 553455555555 55555 3 47899999999999999987663 66788999999999999999999999999999
Q ss_pred HHhhhhhhhhh---HHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHH
Q 013549 135 ENFKNSILGVR---VAAMEALAGLYLQL-GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLES 210 (441)
Q Consensus 135 l~i~~~~lg~~---~~al~~La~l~~~~-G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~e 210 (441)
+.+.+.. |.. ..++++++.+|..+ |++++|..++++++++....... ..........|.++..+|+|++
T Consensus 104 l~l~~~~-g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 104 IQIFTHR-GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV------ALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHHHHhCCHHH
Confidence 9998763 332 34788999999996 99999999999999998654421 1111122345788889999999
Q ss_pred HHHHHHhhhhccCCch-------HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549 211 AESFFKGLQEEEGCTG-------SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 283 (441)
Q Consensus 211 Ae~l~~~aL~~~~~~~-------~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al 283 (441)
|..+|++++...+... .+..++|.++..+|++++|+..|++++++. .. +.. .. ....+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~------~~~----~~--~~~~l 241 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED---PN------FAD----SR--ESNFL 241 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------------------HHHH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC------CCC----cH--HHHHH
Confidence 9999999999332221 245678899999999999999999999872 11 110 01 12345
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHHH
Q 013549 284 FALGQLEA--HMGNFGDAEEILTRTL 307 (441)
Q Consensus 284 ~nLg~ly~--~qG~y~eAe~l~~rAL 307 (441)
.+|+..|. +.++|++|...|.+++
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 67887775 5667777766665543
No 63
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.76 E-value=4.2e-18 Score=176.59 Aligned_cols=121 Identities=13% Similarity=0.022 Sum_probs=103.0
Q ss_pred HHcCCHHHHHHHHHhhhh-----ccCCch---HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549 203 LAHGNLESAESFFKGLQE-----EEGCTG---SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~-----~~~~~~---~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~ 274 (441)
..||+|++|+.+|+++|+ -++.|+ .+..+++.+|..||+|++|+++|+|+|+|+++. +|+.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~--------lg~~H-- 367 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF--------FPGSH-- 367 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--------SCSSC--
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH--------cCCCC--
Confidence 379999999999999998 233343 445778999999999999999999999997553 44322
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549 275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 335 (441)
Q Consensus 275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q 335 (441)
|+ +..+++|||.+|..||+|++|+++|+|||+|+++++|++||.|+.+++||+.+....
T Consensus 368 p~--~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 368 PV--RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred hH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 32 455789999999999999999999999999999999999999999999999988654
No 64
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=5.2e-17 Score=165.73 Aligned_cols=223 Identities=5% Similarity=-0.089 Sum_probs=177.6
Q ss_pred CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhcCC
Q 013549 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ-DDTSSVVADKCLQLCEKHKP 181 (441)
Q Consensus 103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~-~~~A~~l~~~~L~i~~~~~~ 181 (441)
-.|..+.+++++|.++..+|+|++|+..|++++.+.+... .++++++.++..+|+ +++|...+++++.+--+.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-- 165 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-- 165 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC--
Confidence 4678899999999999999999999999999999887642 478999999999997 999999999997553111
Q ss_pred CcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 182 ENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 182 ~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
..+....|.++..+|+|++|+.+|+++|...+....+..++|.++..+|+|++|+..|+++|++ .-
T Consensus 166 ----------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P- 231 (382)
T 2h6f_A 166 ----------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DV- 231 (382)
T ss_dssp ----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CT-
T ss_pred ----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CC-
Confidence 1122346888889999999999999999977778888899999999999999999999999998 11
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAH-MGNFGDA-----EEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK 335 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~-qG~y~eA-----e~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q 335 (441)
. ...+++++|.+|.. .|++++| +++|++|+.+ .|+-...++++|.+|..+
T Consensus 232 ----~------------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 232 ----R------------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDR 287 (382)
T ss_dssp ----T------------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTT
T ss_pred ----C------------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHcc
Confidence 1 13468999999999 5555888 4889998885 355567899999999998
Q ss_pred h--chhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhc
Q 013549 336 A--MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 383 (441)
Q Consensus 336 G--~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g 383 (441)
| ++++| ...++++ + .. |+....+.+++.++..+|
T Consensus 288 g~~~~~~a------~~~~~~~----~-~~---p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 288 GLSKYPNL------LNQLLDL----Q-PS---HSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp CGGGCHHH------HHHHHHH----T-TT---CCCHHHHHHHHHHHHHHH
T ss_pred CccchHHH------HHHHHHh----c-cC---CCCHHHHHHHHHHHHHHh
Confidence 8 46665 5555443 2 23 333346667888887764
No 65
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=2.9e-16 Score=141.90 Aligned_cols=213 Identities=12% Similarity=0.057 Sum_probs=168.1
Q ss_pred CchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549 103 AESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (441)
Q Consensus 103 ~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~ 182 (441)
+.|....++..+|.++..+|+|++|++.|++++.+.+.. ..++..++.++..+|++++|..++++++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---- 74 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD---- 74 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----
Confidence 467888999999999999999999999999998876543 246788999999999999999999998765311
Q ss_pred cchhhhhhHhHHHHHHHHHHHHc-CCHHHHHHHHHhhhh--ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh
Q 013549 183 NYKTYGAVNSRANAVKGLVELAH-GNLESAESFFKGLQE--EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ 259 (441)
Q Consensus 183 ~~~~~~~l~~~a~al~gl~~~~q-G~y~eAe~l~~~aL~--~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~ 259 (441)
. .......+.++... |++++|+.+|++++. ..+....+...+|.++..+|++++|+.+|++++++.
T Consensus 75 ~--------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 143 (225)
T 2vq2_A 75 S--------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--- 143 (225)
T ss_dssp C--------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred C--------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 1 11223457777889 999999999999999 444445667888999999999999999999999871
Q ss_pred cccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHHHHHhhch
Q 013549 260 KDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS-HHPKVGVVLTCLALMFRNKAMQ 338 (441)
Q Consensus 260 ~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~-~HP~va~~l~nLa~ly~~qG~~ 338 (441)
.. ...++.++|.+|..+|+|++|.++|++++.+. + +++. .+..++.+|...|++
T Consensus 144 ~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 144 PQ-----------------FPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQAD---DLLLGWKIAKALGNA 198 (225)
T ss_dssp TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCCHH---HHHHHHHHHHHTTCH
T ss_pred CC-----------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCHH---HHHHHHHHHHhcCcH
Confidence 11 12357899999999999999999999999853 3 4444 467888999999998
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549 339 EHSSALLIQEGLYRRALEFLKAPPLESEGVE 369 (441)
Q Consensus 339 eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~ 369 (441)
++| ..++++++++ .|+++...
T Consensus 199 ~~a------~~~~~~~~~~----~p~~~~~~ 219 (225)
T 2vq2_A 199 QAA------YEYEAQLQAN----FPYSEELQ 219 (225)
T ss_dssp HHH------HHHHHHHHHH----CTTCHHHH
T ss_pred HHH------HHHHHHHHHh----CCCCHHHH
Confidence 876 6667666554 35555544
No 66
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=3.1e-16 Score=153.19 Aligned_cols=223 Identities=12% Similarity=0.112 Sum_probs=158.9
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhh--hhhhhhhHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFK--NSILGVRVAAMEALAGL 155 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~--~~~lg~~~~al~~La~l 155 (441)
.+|+|++|+..++. .++| ...++..++.++...|++++|++.+++.+... +.. ...+..++.+
T Consensus 46 ~~g~~~~al~~~~~----------~~~~-~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~----~~~~~~la~~ 110 (291)
T 3mkr_A 46 AQRKYGVVLDEIKP----------SSAP-ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN----TTFLLMAASI 110 (291)
T ss_dssp HTTCHHHHHHHSCT----------TSCH-HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC----HHHHHHHHHH
T ss_pred HCCCHHHHHHHhcc----------cCCh-hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC----HHHHHHHHHH
Confidence 46788888874433 1334 56888889999999999999999998876542 221 2356778888
Q ss_pred HHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCch--HHHHHHH
Q 013549 156 YLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTG--SAALSYG 233 (441)
Q Consensus 156 ~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~--~~a~~~a 233 (441)
+.++|++++|..++++ +.. . .+....+.++..+|++++|+..|++++...+... ..+..+.
T Consensus 111 ~~~~g~~~~Al~~l~~---------~~~------~--~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~ 173 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ---------GDS------L--ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWV 173 (291)
T ss_dssp HHHTTCHHHHHHHHTT---------CCS------H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhC---------CCC------H--HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHH
Confidence 8899998888776654 111 1 1223456777889999999999999988443332 2223344
Q ss_pred HHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 234 EYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 234 ~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
.++...|++++|..+|+++++.. . + ....++++|.+|..+|+|++|++.|+++|.+.
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~---p-----~------------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--- 230 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKC---S-----P------------TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--- 230 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHS---C-----C------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHhCchHHHHHHHHHHHHHHhC---C-----C------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 55556789999999999998771 1 1 12457889999999999999999999999753
Q ss_pred hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549 314 FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 369 (441)
Q Consensus 314 lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~ 369 (441)
|++|+ ++.|+|.++..+|+++++ ++.++++++++ .|+||.+.
T Consensus 231 --p~~~~---~l~~l~~~~~~~g~~~ea-----a~~~~~~~~~~----~P~~~~~~ 272 (291)
T 3mkr_A 231 --SGHPE---TLINLVVLSQHLGKPPEV-----TNRYLSQLKDA----HRSHPFIK 272 (291)
T ss_dssp --TTCHH---HHHHHHHHHHHTTCCHHH-----HHHHHHHHHHH----CTTCHHHH
T ss_pred --CCCHH---HHHHHHHHHHHcCCCHHH-----HHHHHHHHHHh----CCCChHHH
Confidence 45554 588899999999998764 36788888776 46777654
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.75 E-value=2.2e-17 Score=181.48 Aligned_cols=178 Identities=11% Similarity=0.093 Sum_probs=148.8
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
.+|+.+..++|+|..+. .+|+|++|+.+|++++++. |..+.+++|||.+|..+|+|++|++.|+++++
T Consensus 4 s~P~~a~al~nLG~~~~----~~G~~~eAi~~~~kAl~l~--------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKR----EQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp --CHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 37888899999999983 4799999999999999864 44577899999999999999999999999987
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK 216 (441)
Q Consensus 137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~ 216 (441)
+.+... .++ ..+|.++..+|+|++|+..|+
T Consensus 72 l~P~~~----~a~----------------------------------------------~nLg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 72 ISPTFA----DAY----------------------------------------------SNMGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp HCTTCH----HHH----------------------------------------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCCH----HHH----------------------------------------------HHHHHHHHHcCCHHHHHHHHH
Confidence 765421 011 124666778999999999999
Q ss_pred hhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCH
Q 013549 217 GLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF 296 (441)
Q Consensus 217 ~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y 296 (441)
+++...+....+..++|.+|..+|+|++|+..|++||++ .-. ...+++|||.+|..+|+|
T Consensus 102 kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~-----------------~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 102 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPD-----------------FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSC-----------------CHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----------------ChHHHhhhhhHHHhcccH
Confidence 999977777888899999999999999999999999998 111 124689999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q 013549 297 GDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~ 316 (441)
++|++.|++++++..+.+..
T Consensus 162 ~~A~~~~~kal~l~~~~~~~ 181 (723)
T 4gyw_A 162 TDYDERMKKLVSIVADQLEK 181 (723)
T ss_dssp TTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhHHhh
Confidence 99999999999999876543
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.75 E-value=2.3e-17 Score=171.99 Aligned_cols=210 Identities=13% Similarity=0.082 Sum_probs=170.4
Q ss_pred HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q 013549 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNY-VEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG 160 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y-~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G 160 (441)
+++++..+++.. ...|..+..+.++|.+|..+|+| ++|++.|++++.+.+.. ..++.+++.+|..+|
T Consensus 84 ~~~al~~l~~~~--------~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g 151 (474)
T 4abn_A 84 MEKTLQQMEEVL--------GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKG 151 (474)
T ss_dssp HHHHHHHHHHHH--------TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--------ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC
Confidence 445555555443 34556789999999999999999 99999999999887653 247899999999999
Q ss_pred CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHc---------CCHHHHHHHHHhhhhccCCchHHHHH
Q 013549 161 QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAH---------GNLESAESFFKGLQEEEGCTGSAALS 231 (441)
Q Consensus 161 ~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~q---------G~y~eAe~l~~~aL~~~~~~~~~a~~ 231 (441)
++++|..++++++++. +. ..+....|.++..+ |+|++|+.+|++++...+....+..+
T Consensus 152 ~~~~A~~~~~~al~~~----p~---------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 218 (474)
T 4abn_A 152 DVTSAHTCFSGALTHC----KN---------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYI 218 (474)
T ss_dssp CHHHHHHHHHHHHTTC----CC---------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhhC----CC---------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999997442 21 12223457777788 99999999999999977777788889
Q ss_pred HHHHHHHc--------cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 232 YGEYLHAT--------RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEIL 303 (441)
Q Consensus 232 ~a~~~~~q--------G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~ 303 (441)
+|.+|..+ |+|++|+..|++|+++. .. . +. ...++++||.+|..+|+|++|++.|
T Consensus 219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~-----~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD---RK-----A-------SS--NPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC---GG-----G-------GG--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhC---CC-----c-------cc--CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999 99999999999999981 10 0 01 1346899999999999999999999
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 304 TRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 304 ~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
++|+.+ .|.....+.+++.++..+|++++|
T Consensus 282 ~~al~l--------~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 282 SQAAAL--------DPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999987 355557889999999999998887
No 69
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=2.3e-16 Score=154.00 Aligned_cols=241 Identities=14% Similarity=0.066 Sum_probs=179.8
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWR-GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~-a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
.|+|++|+...++... ..|.. .....-++..|..+|+|++|+..++.. . .....++..++.++.
T Consensus 12 ~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~----~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S----APELQAVRMFAEYLA 76 (291)
T ss_dssp TTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C----ChhHHHHHHHHHHHc
Confidence 6899999999988654 23443 345677799999999999999877552 1 122346777888888
Q ss_pred hcCCcchhHHHHHHHHHHHHhc-CCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKH-KPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYL 236 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~-~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~ 236 (441)
..|++++|...+++.+ ... .|.. .......|.++..+|++++|+..|++ +....+...++.+|
T Consensus 77 ~~~~~~~A~~~l~~ll---~~~~~P~~--------~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 77 SHSRRDAIVAELDREM---SRSVDVTN--------TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQIL 140 (291)
T ss_dssp CSTTHHHHHHHHHHHH---HSCCCCSC--------HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH---hcccCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 8898888887776654 121 1211 11234568888999999999999998 44556778889999
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS 316 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~ 316 (441)
..+|++++|+..|++++++ . |+.........+..++..+|+|++|..+|++++..
T Consensus 141 ~~~g~~~~A~~~l~~~~~~---~---------------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------- 195 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQ---D---------------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK------- 195 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHH---C---------------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------
T ss_pred HHCCCHHHHHHHHHHHHhh---C---------------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-------
Confidence 9999999999999999987 1 11111111122334555679999999999999975
Q ss_pred CCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHH
Q 013549 317 HHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEAL 389 (441)
Q Consensus 317 ~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal 389 (441)
+|.....++++|.+|..+|++++| +..|+++|++. |++++ .+.|++.++..+|++.++.
T Consensus 196 -~p~~~~~~~~la~~~~~~g~~~eA------~~~l~~al~~~----p~~~~---~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 196 -CSPTLLLLNGQAACHMAQGRWEAA------EGVLQEALDKD----SGHPE---TLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCHH---HHHHHHHHHHHTTCCHHHH
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCHH---HHHHHHHHHHHcCCCHHHH
Confidence 566677999999999999999987 99999999873 45554 5788999999999987643
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.73 E-value=2.9e-16 Score=148.49 Aligned_cols=206 Identities=14% Similarity=0.069 Sum_probs=165.0
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~ 183 (441)
.|..+..+.++|..+..+|+|++|++.|++++...+.. .....++..++.+|..+|++++|...+++++++.-...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~--- 86 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP--- 86 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc---
Confidence 45667899999999999999999999999998876543 11234788999999999999999999999976542211
Q ss_pred chhhhhhHhHHHHHHHHHHHH--------cCCHHHHHHHHHhhhhccCCchHHH-----------------HHHHHHHHH
Q 013549 184 YKTYGAVNSRANAVKGLVELA--------HGNLESAESFFKGLQEEEGCTGSAA-----------------LSYGEYLHA 238 (441)
Q Consensus 184 ~~~~~~l~~~a~al~gl~~~~--------qG~y~eAe~l~~~aL~~~~~~~~~a-----------------~~~a~~~~~ 238 (441)
....+....|.++.. +|++++|+..|++++...+....+. ..+|.+|..
T Consensus 87 ------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 87 ------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp ------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223356888888 9999999999999999444332222 677999999
Q ss_pred ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHH
Q 013549 239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM----------GNFGDAEEILTRTLT 308 (441)
Q Consensus 239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q----------G~y~eAe~l~~rAL~ 308 (441)
+|+|++|+..|+++++.. .. .+ ....++.++|.+|..+ |+|++|+..|++++.
T Consensus 161 ~g~~~~A~~~~~~~l~~~---p~---~~-----------~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDAY---PD---TP-----------WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp TTCHHHHHHHHHHHHHHC---TT---ST-----------THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHC---CC---Cc-----------hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 999999999999999872 11 11 0234688999999987 999999999999998
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
.+ |+||.+..+...|+.++..+++++++
T Consensus 224 ~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 224 IF-----PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HC-----TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HC-----CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 65 89999999999999999999998876
No 71
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=2.6e-15 Score=135.62 Aligned_cols=219 Identities=16% Similarity=0.100 Sum_probs=173.3
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
+.|..+..+..+|..+.+ .|+|++|+.++++++.+. |....++..+|.+|..+|+|++|++.|++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMR----GQDYRQATASIEDALKSD--------PKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70 (225)
T ss_dssp -CCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456777788888888743 689999999999999854 33366899999999999999999999999988
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHH
Q 013549 137 FKNSILGVRVAAMEALAGLYLQL-GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFF 215 (441)
Q Consensus 137 i~~~~lg~~~~al~~La~l~~~~-G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~ 215 (441)
+.+.. ...+.+++.++..+ |++++|..++++++. .+..+.. .......+.++..+|++++|+.+|
T Consensus 71 ~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 71 IKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA-----DPTYPTP-----YIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp HCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-----STTCSCH-----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-----CcCCcch-----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 76543 23678899999999 999999999998875 1111111 122234677888999999999999
Q ss_pred HhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC
Q 013549 216 KGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN 295 (441)
Q Consensus 216 ~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~ 295 (441)
++++...+....+...+|.++..+|++++|..+|++++.+. .. .. ...+..++.++...|+
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----~~------------~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV---EV----LQ------------ADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CS----CC------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CC------------HHHHHHHHHHHHhcCc
Confidence 99999666667778889999999999999999999999872 10 01 1245788899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCchHHHHH
Q 013549 296 FGDAEEILTRTLTKTEELFGSHHPKVGVVL 325 (441)
Q Consensus 296 y~eAe~l~~rAL~i~e~~lG~~HP~va~~l 325 (441)
+++|..++++++.+ .|++|.+...+
T Consensus 198 ~~~a~~~~~~~~~~-----~p~~~~~~~~l 222 (225)
T 2vq2_A 198 AQAAYEYEAQLQAN-----FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHh
Confidence 99999999988764 57888776554
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=3.5e-16 Score=139.39 Aligned_cols=169 Identities=14% Similarity=0.134 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
+++.-..++|..|. .+|+|++|+..|++++.+. |.-..++.++|.+|..+|++++|++.+++++...+
T Consensus 3 e~~~iy~~lG~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~ 70 (184)
T 3vtx_A 3 ETTTIYMDIGDKKR----TKGDFDGAIRAYKKVLKAD--------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT 70 (184)
T ss_dssp -CHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 45666788999983 4799999999999999854 44467899999999999999999999998755443
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhh
Q 013549 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQ 219 (441)
Q Consensus 140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL 219 (441)
... .+....|..+...+++++|...+++++
T Consensus 71 ~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~a~~~~~~a~ 100 (184)
T 3vtx_A 71 TSA--------------------------------------------------EAYYILGSANFMIDEKQAAIDALQRAI 100 (184)
T ss_dssp CCH--------------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhH--------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 210 001123556678999999999999999
Q ss_pred hccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549 220 EEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 299 (441)
Q Consensus 220 ~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA 299 (441)
...+....+...+|.+|..+|+|++|+..|++++++ .. . ...++.+||.+|..+|+|++|
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p-----~------------~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 101 ALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KP-----G------------FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cc-----h------------hhhHHHHHHHHHHHCCCHHHH
Confidence 976767778888999999999999999999999988 11 1 124678999999999999999
Q ss_pred HHHHHHHHHHH
Q 013549 300 EEILTRTLTKT 310 (441)
Q Consensus 300 e~l~~rAL~i~ 310 (441)
++.|++||++.
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999864
No 73
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.71 E-value=1.4e-15 Score=147.07 Aligned_cols=194 Identities=10% Similarity=0.034 Sum_probs=147.0
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~ 183 (441)
+|.....+.+.+..+..+|+|++|++.+++++...+... .. ...
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~~-----------------------~~~------------ 114 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EF-----------------------QQF------------ 114 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-HH-----------------------HHH------------
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-hH-----------------------HHH------------
Confidence 456667788888899999999999999988876543210 00 000
Q ss_pred chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc----cCCc--hHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Q 013549 184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE----EGCT--GSAALSYGEYLHATRNFLLAKKFYQKVIEVLA 257 (441)
Q Consensus 184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~----~~~~--~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~ 257 (441)
.......|.++..+|+|++|+.+|++++.. .... ..+..++|.+|..+|+|++|+.+|++|+++..
T Consensus 115 --------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 115 --------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp --------HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 000012466677899999999999999971 1111 34557789999999999999999999999964
Q ss_pred hhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549 258 EQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337 (441)
Q Consensus 258 ~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~ 337 (441)
.... .....+.+++|+|.+|..+|+|++|.++|++|+.+..+ ..+++.++.++.++|.+|..+|+
T Consensus 187 ~~~~-------------~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 187 ALHD-------------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HSCC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHHHTTC
T ss_pred hcCc-------------cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHcCC
Confidence 3211 11122357899999999999999999999999999854 56778899999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcC
Q 013549 338 QEHSSALLIQEGLYRRALEFLKAP 361 (441)
Q Consensus 338 ~eeA~~~~~Ae~ly~rAL~i~~~~ 361 (441)
+++| .+..|++|+++.+..
T Consensus 252 ~~~A-----i~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 252 EEAE-----IEDAYKKASFFFDIL 270 (293)
T ss_dssp CHHH-----HHHHHHHHHHHHHHT
T ss_pred cHHH-----HHHHHHHHHHHHHHh
Confidence 9886 167799999998753
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.71 E-value=7.1e-16 Score=160.62 Aligned_cols=197 Identities=12% Similarity=0.016 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHhcCCc-chhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Q 013549 146 VAAMEALAGLYLQLGQD-DTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC 224 (441)
Q Consensus 146 ~~al~~La~l~~~~G~~-~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~ 224 (441)
...+..++.++..+|++ ++|+.++++++++. +.. ..+...+|.++..+|+|++|+.+|++++...+.
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PEL--------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45788899999999999 99999999998653 111 122345688889999999999999999996555
Q ss_pred chHHHHHHHHHHHHc---------cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc--
Q 013549 225 TGSAALSYGEYLHAT---------RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-- 293 (441)
Q Consensus 225 ~~~~a~~~a~~~~~q---------G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q-- 293 (441)
..+..++|.++..+ |+|++|+.+|++|+++ ... ...++++||.+|..+
T Consensus 170 -~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~-----------------~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 170 -KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVL-----------------DGRSWYILGNAYLSLYF 228 (474)
T ss_dssp -HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCC-----------------CHHHHHHHHHHHHHHHH
Confidence 57778899999999 9999999999999998 111 124678999999999
Q ss_pred ------CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcc
Q 013549 294 ------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG 367 (441)
Q Consensus 294 ------G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~ 367 (441)
|+|++|+..|++|+.+. |.+|.....+.+||.+|..+|++++| ...|++|+++. |+++
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~l~----p~~~- 292 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEA------LEGFSQAAALD----PAWP- 292 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCH-
T ss_pred hhccccchHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC----CCCH-
Confidence 99999999999999982 22338889999999999999999987 89999999873 3333
Q ss_pred hHhhhccHHHHHHHhccHHHHHHHhh
Q 013549 368 VETKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 368 ~~~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
....+++.++...|++++|+....
T Consensus 293 --~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 293 --EPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999998763
No 75
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.7e-15 Score=152.22 Aligned_cols=242 Identities=10% Similarity=0.064 Sum_probs=185.7
Q ss_pred ChhhHHHHHHHHHHhhhccccCCC---------CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhh--hH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQ---------LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGV--RV 146 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g---------~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~--~~ 146 (441)
.+|+|.+|+..|.+++...+.... ...+....++.+||.+|..+|+|++|++.|++++.+....-.. ..
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK 95 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence 468999999999999997765432 2245567789999999999999999999999999887653111 12
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-----
Q 013549 147 AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE----- 221 (441)
Q Consensus 147 ~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~----- 221 (441)
...++++.++...|+++++..++++++.+....... ....+....++.++..+|+|++|..++++++..
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV------FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC------SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc------HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 345667777888899999999999999988766522 112233345677888999999999999999871
Q ss_pred -cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHH
Q 013549 222 -EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAE 300 (441)
Q Consensus 222 -~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe 300 (441)
.+....+....+.+|..+|+|++|..+|++++.+...... |.........++|.++..+|+|++|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-------------PTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-------------CHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-------------chHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 1222344567799999999999999999999999532111 22223445678999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhch
Q 013549 301 EILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338 (441)
Q Consensus 301 ~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ 338 (441)
.+|.+++.++.......++..+........++.-....
T Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (434)
T 4b4t_Q 237 SYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNL 274 (434)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999988777666666666555543
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.71 E-value=1.6e-15 Score=139.91 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKN-SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~-~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
..+.++|.++..+|+|++|++.|++++.+.+ ... .
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------------~--------------------- 43 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS-----------------------V--------------------- 43 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH-----------------------H---------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc-----------------------H---------------------
Confidence 7899999999999999999999999876654 110 0
Q ss_pred hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549 188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 267 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~ 267 (441)
.....|.++..+|+|++|+..|++++...+....+...+|.+|..+|+|++|+..|++++++. .. .
T Consensus 44 ------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~-----~ 109 (228)
T 4i17_A 44 ------TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV---PG-----N 109 (228)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-----C
T ss_pred ------HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CC-----c
Confidence 001246777889999999999999999777777888899999999999999999999999982 11 1
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch--HHHHHHHHHHHHHHhhch
Q 013549 268 LGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK--VGVVLTCLALMFRNKAMQ 338 (441)
Q Consensus 268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~--va~~l~nLa~ly~~qG~~ 338 (441)
.........++.++|.++..+|+|++|++.|++|+.+ +|+ ...++.+||.+|..+|+.
T Consensus 110 -----~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 110 -----ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--------TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--------CCCcccHHHHHHHHHHHHHHHHH
Confidence 0000112246789999999999999999999999985 788 889999999999999987
No 77
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.71 E-value=1e-15 Score=137.28 Aligned_cols=168 Identities=13% Similarity=0.074 Sum_probs=131.9
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
+..|+|++|+..++...........+...+|.++..+|+|++|+.+|++++++.++... ......+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--------------HTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--------------HHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC--------------cHHHHHH
Confidence 46899999999555444433344566778899999999999999999999999643211 1123457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 362 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~ 362 (441)
++++|.+|..+|+|++|+++|++++.+.+ ..|++++..+.++.++|.+|..+|++++| +..+++++++.+..+
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGA------RQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCCHHHH------HHHHHHHHHHHHhcc
Confidence 89999999999999999999999999998 55656668899999999999999999987 899999999976432
Q ss_pred CCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 363 LESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 363 ~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
+....+..+.+++.++..+|+|++|+...
T Consensus 142 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 170 (203)
T 3gw4_A 142 -DQVAIACAFRGLGDLAQQEKNLLEAQQHW 170 (203)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 23335566789999999999998887665
No 78
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=1.6e-15 Score=141.93 Aligned_cols=228 Identities=11% Similarity=-0.009 Sum_probs=173.9
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
+.|..+..+.++|..+. ..|+|++|+.+|++++.+. |....++.++|.+|..+|+|++|++.|++++.
T Consensus 38 ~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 38 TDDERAQLLYERGVLYD----SLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp CHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHH----HcccHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45778888999999984 3689999999999999863 33456899999999999999999999999998
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549 137 FKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFK 216 (441)
Q Consensus 137 i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~ 216 (441)
+.+.. ..++.+++.+|..+|++++|..++++++.+. +... . .....++. ..+|++++|..+|+
T Consensus 106 ~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~----~----~~~~~~~~-~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 106 LDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDP----F----RSLWLYLA-EQKLDEKQAKEVLK 168 (275)
T ss_dssp HCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCH----H----HHHHHHHH-HHHHCHHHHHHHHH
T ss_pred cCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCCh----H----HHHHHHHH-HHhcCHHHHHHHHH
Confidence 87653 2478899999999999999999999997643 1110 0 11122332 56799999999999
Q ss_pred hhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCH
Q 013549 217 GLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNF 296 (441)
Q Consensus 217 ~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y 296 (441)
+++...+... ....++.++..++++++|...+++++....... +. ...++.++|.+|..+|++
T Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~--~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 169 QHFEKSDKEQ-WGWNIVEFYLGNISEQTLMERLKADATDNTSLA--------------EH--LSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHHHSCCCS-THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH--------------HH--HHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCcch-HHHHHHHHHHHhcCHHHHHHHHHHHhccccccc--------------cc--ccHHHHHHHHHHHHcCCH
Confidence 9998433332 234567778889999999999999887621100 11 234678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
++|..+|++++.+ .|+++. ..+.++...|++++|
T Consensus 232 ~~A~~~~~~al~~-----~p~~~~------~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 232 DSATALFKLAVAN-----NVHNFV------EHRYALLELSLLGQD 265 (275)
T ss_dssp HHHHHHHHHHHTT-----CCTTCH------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-----CchhHH------HHHHHHHHHHHHHhh
Confidence 9999999999976 243332 236778888888887
No 79
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=3.3e-14 Score=147.25 Aligned_cols=266 Identities=11% Similarity=0.063 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENF 137 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~----qG~y~eA~e~~~ral~i 137 (441)
+..+.++|..|..-....+++++|+.+|+++... .+ ..++.+||.+|.. .+++++|+..|+++.+.
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------GL---PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 3456677777643112256788888888888752 12 3567788888888 78888888888887665
Q ss_pred hhhhhhhhHHHHHHHHHHHHh----cCCcchhHHHHHHHHHH------------HHhcC--CCcchhhhhhH--------
Q 013549 138 KNSILGVRVAAMEALAGLYLQ----LGQDDTSSVVADKCLQL------------CEKHK--PENYKTYGAVN-------- 191 (441)
Q Consensus 138 ~~~~lg~~~~al~~La~l~~~----~G~~~~A~~l~~~~L~i------------~~~~~--~~~~~~~~~l~-------- 191 (441)
.. ..++.+|+.+|.. .+++++|..+++++++. +.... ...+.++....
T Consensus 145 ~~------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 218 (490)
T 2xm6_A 145 GR------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD 218 (490)
T ss_dssp TC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 32 1256667777765 66777777777766532 00000 00000000000
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhhcccC
Q 013549 192 SRANAVKGLVELA----HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFS 263 (441)
Q Consensus 192 ~~a~al~gl~~~~----qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~ 263 (441)
..+....|.++.. .+++++|..+|+++++.. ...+..++|.+|.. .+++++|..+|++|++. +
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~-- 289 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----G-- 289 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----T--
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----C--
Confidence 0011122333332 455555555555555421 22344555555555 56666666666665432 1
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh--
Q 013549 264 DMNTLGSCNMALEEVALAATFALGQLEAHM-----GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-- 336 (441)
Q Consensus 264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~q-----G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG-- 336 (441)
...+..+||.+|... +++++|..+|++|++. .+| ..+.+||.+|...|
T Consensus 290 ---------------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 290 ---------------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------GDA---TAQANLGAIYFRLGSE 344 (490)
T ss_dssp ---------------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHSCCH
T ss_pred ---------------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------CCH---HHHHHHHHHHHhCCCc
Confidence 012456777777777 7777777777777653 233 45677777777655
Q ss_pred -chhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH----hccHHHHHHHh
Q 013549 337 -MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQ 392 (441)
Q Consensus 337 -~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~----~g~yaeal~~~ 392 (441)
++++| ..+|++|++. +++ ....+++.++.. .+++.+|+.++
T Consensus 345 ~~~~~A------~~~~~~a~~~------~~~---~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 345 EEHKKA------VEWFRKAAAK------GEK---AAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHH------HHHHHHHHHT------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred ccHHHH------HHHHHHHHHC------CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 44443 6677777653 222 345567777776 66777777665
No 80
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.69 E-value=3.1e-15 Score=144.67 Aligned_cols=207 Identities=10% Similarity=0.032 Sum_probs=148.2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (441)
Q Consensus 105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~ 184 (441)
+.....+.+.+..+..+|+|++|+..+++++...+..... .
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~-------------------------~-------------- 112 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-------------------------Q-------------- 112 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH-------------------------H--------------
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH-------------------------H--------------
Confidence 4556666677777888888888888888775533221000 0
Q ss_pred hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Q 013549 185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAE 258 (441)
Q Consensus 185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~ 258 (441)
.. .......|.++..+|+|++|..+|++++.. .... ..+..++|.+|..+|+|++|+.+|++||++..+
T Consensus 113 ----~~-~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 187 (293)
T 3u3w_A 113 ----QF-LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA 187 (293)
T ss_dssp ----HH-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HH-HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 00 000012355667889999999999999981 1111 234578899999999999999999999998643
Q ss_pred hcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc-
Q 013549 259 QKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM- 337 (441)
Q Consensus 259 ~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~- 337 (441)
... .......+++|+|.+|..+|+|++|.+++++|+.+..+. .+++.++.++.++|.+|..+|+
T Consensus 188 ~~~-------------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~ 252 (293)
T 3u3w_A 188 LHD-------------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYE 252 (293)
T ss_dssp SSC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTTCC
T ss_pred ccc-------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhCCc
Confidence 211 011234578999999999999999999999999999875 5678899999999999999995
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHH
Q 013549 338 QEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIV 378 (441)
Q Consensus 338 ~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~ 378 (441)
+++| ...|++|+++.+.. +.+.....+.+....
T Consensus 253 ~~~A------~~~~~~Al~i~~~~--~~~~~~~~l~~~~~~ 285 (293)
T 3u3w_A 253 EAEI------EDAYKKASFFFDIL--EMHAYKEALVNKISR 285 (293)
T ss_dssp HHHH------HHHHHHHHHHHHHT--TCTGGGGGGTTC---
T ss_pred HHHH------HHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 5887 89999999999753 334445555544333
No 81
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=3.8e-15 Score=138.27 Aligned_cols=200 Identities=14% Similarity=0.018 Sum_probs=153.8
Q ss_pred chh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCC
Q 013549 104 ESW-RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPE 182 (441)
Q Consensus 104 h~~-~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~ 182 (441)
.|. .+.++..+|.++..+|+|++|++.|++++.+.+...
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---------------------------------------- 71 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA---------------------------------------- 71 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----------------------------------------
Confidence 344 488999999999999999999999998865532210
Q ss_pred cchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhccc
Q 013549 183 NYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDF 262 (441)
Q Consensus 183 ~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~ 262 (441)
.+....+.++..+|++++|+.+|++++...+....+...++.++..+|++++|+.+|++++.. ..
T Consensus 72 ----------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~- 136 (252)
T 2ho1_A 72 ----------DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD----TL- 136 (252)
T ss_dssp ----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC----TT-
T ss_pred ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC----cc-
Confidence 001124566778999999999999999966666677788999999999999999999999871 00
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhh
Q 013549 263 SDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSS 342 (441)
Q Consensus 263 ~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~ 342 (441)
. |. ...++.++|.+|..+|++++|+.+|++++.+ . |....++.++|.+|..+|++++|
T Consensus 137 ----~-------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~la~~~~~~g~~~~A- 194 (252)
T 2ho1_A 137 ----Y-------PE--RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----N---RNQPSVALEMADLLYKEREYVPA- 194 (252)
T ss_dssp ----C-------TT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---SCCHHHHHHHHHHHHHTTCHHHH-
T ss_pred ----C-------cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C---cccHHHHHHHHHHHHHcCCHHHH-
Confidence 0 11 2346789999999999999999999999986 2 44456788999999999999987
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 343 ALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 343 ~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
...|++++++. ++.+ ..+..++.++...|++++|....
T Consensus 195 -----~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 195 -----RQYYDLFAQGG----GQNA---RSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp -----HHHHHHHHTTS----CCCH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHHHHhC----cCcH---HHHHHHHHHHHHccCHHHHHHHH
Confidence 88898886642 2233 34556788888888888777654
No 82
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=2.8e-14 Score=147.78 Aligned_cols=267 Identities=15% Similarity=0.096 Sum_probs=180.3
Q ss_pred HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhh
Q 013549 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE----SGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~----qG~y~eA~e~~~ral~i~ 138 (441)
..+.+++..|.......+++++|+.+|+++... .+ ..++.+||.+|.. .+++++|++.|+++.+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~ 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 345566666633211245677777777777653 12 3457777777776 677777777777776542
Q ss_pred hhhhhhhHHHHHHHHHHHHh----cCCcchhHHHHHHHHHH------------HHhcC--CCcchhhhhhH--------h
Q 013549 139 NSILGVRVAAMEALAGLYLQ----LGQDDTSSVVADKCLQL------------CEKHK--PENYKTYGAVN--------S 192 (441)
Q Consensus 139 ~~~lg~~~~al~~La~l~~~----~G~~~~A~~l~~~~L~i------------~~~~~--~~~~~~~~~l~--------~ 192 (441)
. ..+..+|+.+|.. .+++++|..+++++++. ..... ...+.++.... .
T Consensus 182 ~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 255 (490)
T 2xm6_A 182 N------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS 255 (490)
T ss_dssp C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred C------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 1 1245566666665 56666666666665421 00000 00111110000 1
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc-----cChHHHHHHHHHHHHHHHhhcccC
Q 013549 193 RANAVKGLVELA----HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT-----RNFLLAKKFYQKVIEVLAEQKDFS 263 (441)
Q Consensus 193 ~a~al~gl~~~~----qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q-----G~y~eA~~ly~rAL~i~~~~~~~~ 263 (441)
.+...+|.++.. .+++++|..+|+++.+.. .+.+...+|.+|... +++++|+.+|++|++. +
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~-- 326 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----G-- 326 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----T--
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----C--
Confidence 122235666766 899999999999998742 345778889999888 9999999999999865 1
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----hh
Q 013549 264 DMNTLGSCNMALEEVALAATFALGQLEAHMG---NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KA 336 (441)
Q Consensus 264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG---~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~----qG 336 (441)
...+..+||.+|...| ++++|.++|++|++. .+ ...+.+||.+|.. ++
T Consensus 327 ---------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 327 ---------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GE---KAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp ---------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCC
T ss_pred ---------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCC
Confidence 0136789999999977 899999999999864 23 4688999999999 88
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHH----hccHHHHHHHhhc
Q 013549 337 MQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQQN 394 (441)
Q Consensus 337 ~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~----~g~yaeal~~~~~ 394 (441)
++++| ..+|++|++. +++ ....+++.+|.. .+++++|..++.+
T Consensus 382 ~~~~A------~~~~~~A~~~------~~~---~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 382 DEQQA------AIWMRKAAEQ------GLS---AAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp CHHHH------HHHHHHHHHT------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CHHHH------HHHHHHHHhC------CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 88876 8999999873 223 466789999987 7899988887633
No 83
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.7e-15 Score=147.05 Aligned_cols=225 Identities=10% Similarity=0.084 Sum_probs=175.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh-------------hhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSIL-------------GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCE 177 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l-------------g~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~ 177 (441)
...-|.-+..+|+|++|++.|+++++..+..- .....++.+|+.+|..+|++++|..++.+++.+..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45567788899999999999999988665421 11234688999999999999999999999998876
Q ss_pred hcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh---c---cCCchHHHHHHHHHHHHccChHHHHHHHHH
Q 013549 178 KHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE---E---EGCTGSAALSYGEYLHATRNFLLAKKFYQK 251 (441)
Q Consensus 178 ~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~---~---~~~~~~~a~~~a~~~~~qG~y~eA~~ly~r 251 (441)
..... ........+.+.++..+|++++|..++++++. . ......+..++|.+|..+|+|++|..++++
T Consensus 87 ~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 87 QFAKS------KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp TSCHH------HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Hccch------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 54410 11122234557777789999999999999988 1 122245567889999999999999999999
Q ss_pred HHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 013549 252 VIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 331 (441)
Q Consensus 252 AL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~l 331 (441)
++.+. .+..++ +. .+.++.++|.+|..+|+|++|..+|++++.+..... ..+...+..+.++|.+
T Consensus 161 ~~~~~---~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 161 LLREF---KKLDDK---------PS--LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGIL 225 (434)
T ss_dssp HHHHH---TTSSCS---------TH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHH
T ss_pred HHHHH---Hhcccc---------hh--HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHH
Confidence 99884 321111 11 345788999999999999999999999999987753 3455678999999999
Q ss_pred HHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549 332 FRNKAMQEHSSALLIQEGLYRRALEFLKAPP 362 (441)
Q Consensus 332 y~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~ 362 (441)
|..+|+|++| ...|.+++++....+
T Consensus 226 ~~~~~~y~~A------~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 226 HCEDKDYKTA------FSYFFESFESYHNLT 250 (434)
T ss_dssp TTSSSCHHHH------HHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHH------HHHHHHHHHHhhhhh
Confidence 9999999987 889999999986543
No 84
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.65 E-value=6.7e-15 Score=142.26 Aligned_cols=170 Identities=11% Similarity=-0.036 Sum_probs=136.5
Q ss_pred HHHHcCCHHHHHHHHHhhhhccCCchH------HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549 201 VELAHGNLESAESFFKGLQEEEGCTGS------AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274 (441)
Q Consensus 201 ~~~~qG~y~eAe~l~~~aL~~~~~~~~------~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~ 274 (441)
.+..+|+|++|+.+|++++...+..+. ....++.++..+|+|++|+.+|++|+++. .. ..+..
T Consensus 84 ~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~---~~--~~~~~------ 152 (293)
T 3u3w_A 84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ---LT--GIDVY------ 152 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC---CC--CSCTT------
T ss_pred HHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh---cc--cccHH------
Confidence 346899999999999999984332222 12346788888999999999999999972 22 11111
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHH
Q 013549 275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRA 354 (441)
Q Consensus 275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rA 354 (441)
..+.++++||.+|..+|+|++|+++|++||.+.++. +.++|..+.++.|+|.+|..+|+|++| ...|++|
T Consensus 153 ---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A------~~~~~~a 222 (293)
T 3u3w_A 153 ---QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEES------LYQVNKA 222 (293)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHH------HHHHHHH
Confidence 134578999999999999999999999999998875 348899999999999999999999987 8999999
Q ss_pred HHHhhcCCCCCcchHhhhccHHHHHHHhc-cHHHHHHHh
Q 013549 355 LEFLKAPPLESEGVETKVDRTDIVALARG-GYAEALSVQ 392 (441)
Q Consensus 355 L~i~~~~~~~~~~~~~~l~nl~~~~~~~g-~yaeal~~~ 392 (441)
+++.+.. .+.+..+..+.++|.++..+| .|++|+..+
T Consensus 223 l~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 223 IEISCRI-NSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHT-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHc-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 9998643 345567788889999999999 468777665
No 85
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.65 E-value=9.9e-15 Score=141.08 Aligned_cols=191 Identities=10% Similarity=-0.011 Sum_probs=140.3
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
..|+....+.+.+..+. .+|+|++|+.++++++.+... .++....+..+..+|.++..+|+|++|++.|++++.
T Consensus 70 ~~~~~~~~l~~~~~~~~----~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLC----KQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHH----HhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34566667777777663 468999999999999997654 234456777888999999999999999999999987
Q ss_pred hhhhhhhhh--HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 137 FKNSILGVR--VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 137 i~~~~lg~~--~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
+........ ..+++ ..|.+|..+|+|++|+.+
T Consensus 144 ~~~~~~~~~~~~~~~~----------------------------------------------~lg~~y~~~~~~~~A~~~ 177 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIEN----------------------------------------------AIANIYAENGYLKKGIDL 177 (293)
T ss_dssp TCCCSSCTTHHHHHHH----------------------------------------------HHHHHHHHTTCHHHHHHH
T ss_pred HHhcCCchHHHHHHHH----------------------------------------------HHHHHHHHcCCHHHHHHH
Confidence 654321100 11222 346666677777777777
Q ss_pred HHhhhh---ccCCc----hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHH
Q 013549 215 FKGLQE---EEGCT----GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG 287 (441)
Q Consensus 215 ~~~aL~---~~~~~----~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg 287 (441)
|++++. ..+.. ..+..++|.+|..+|+|++|+.+|++|+++.... + + ... ...+++++|
T Consensus 178 ~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~--~--~~~---------~~~~~~~lg 243 (293)
T 2qfc_A 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-N--S--MAL---------IGQLYYQRG 243 (293)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T--B--CSS---------HHHHHHHHH
T ss_pred HHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-C--c--HHH---------HHHHHHHHH
Confidence 777774 11111 1456788999999999999999999999995321 1 1 111 235678999
Q ss_pred HHHHHcCCHHHH-HHHHHHHHHHHHHh
Q 013549 288 QLEAHMGNFGDA-EEILTRTLTKTEEL 313 (441)
Q Consensus 288 ~ly~~qG~y~eA-e~l~~rAL~i~e~~ 313 (441)
.+|..+|+|++| +.+|++|+.+++..
T Consensus 244 ~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 244 ECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999 99999999998764
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.63 E-value=2.6e-14 Score=134.95 Aligned_cols=215 Identities=11% Similarity=-0.004 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--
Q 013549 146 VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEG-- 223 (441)
Q Consensus 146 ~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~-- 223 (441)
...+..++..+..+|++++|..++++++.. .|.. .....+....|.++..+|+|++|+..|++++...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~-----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRTH-----EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSCS-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCC-----cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 346778888999999999999999888632 2211 11122334568888999999999999999999433
Q ss_pred -CchHHHHHHHHHHHH--------ccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc----chhHHHHHHHHHHHHHH
Q 013549 224 -CTGSAALSYGEYLHA--------TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM----ALEEVALAATFALGQLE 290 (441)
Q Consensus 224 -~~~~~a~~~a~~~~~--------qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~----~~~~~~~~al~nLg~ly 290 (441)
....+...+|.++.. +|++++|+..|+++++.. .. . ....... ...........++|.+|
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~---~-~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PN---H-ELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TT---C-TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cC---c-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566788999999 999999999999999882 11 1 1110000 00000001127899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh----------hchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 291 AHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK----------AMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 291 ~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q----------G~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
..+|+|++|+..|++++..+ |++|.....+.++|.+|..+ |++++| ...|+++++..
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A------~~~~~~~~~~~-- 225 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA------VELYERLLQIF-- 225 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH------HHHHHHHHHHC--
T ss_pred HHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH------HHHHHHHHHHC--
Confidence 99999999999999999854 67888999999999999988 666665 88888887763
Q ss_pred CCCCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549 361 PPLESEGVETKVDRTDIVALARGGYAEALSV 391 (441)
Q Consensus 361 ~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~ 391 (441)
|+++.+......++.++...++++++...
T Consensus 226 --p~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 226 --PDSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp --TTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred --CCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 67787777777788888777777665544
No 87
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.63 E-value=2.1e-14 Score=128.54 Aligned_cols=189 Identities=20% Similarity=0.149 Sum_probs=133.7
Q ss_pred HHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHH
Q 013549 119 YESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVK 198 (441)
Q Consensus 119 ~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~ 198 (441)
...|+|++|++.++.... . ......++.+++.++..+|++++|..++++++.+....... .....+....
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-H---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH------TAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHHT-S---TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH------HHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-C---hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc------HHHHHHHHHH
Confidence 467888888884443321 1 11223467778888888888888888888888887665421 1112233456
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhc---cC-Cc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549 199 GLVELAHGNLESAESFFKGLQEE---EG-CT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 271 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~---~~-~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~ 271 (441)
|.++..+|+|++|+.+|++++.. .+ .. ..+..++|.++..+|+|++|+.++++++++......
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 142 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD---------- 142 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc----------
Confidence 88888999999999999999982 22 12 344567899999999999999999999999532211
Q ss_pred ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH
Q 013549 272 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR 333 (441)
Q Consensus 272 ~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~ 333 (441)
+ .....++.+||.+|..+|++++|..++++|+.+.++. .+.+..+.++.+++.+..
T Consensus 143 ---~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 143 ---Q-VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp ---H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCC
T ss_pred ---h-HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccchhh
Confidence 1 1133467899999999999999999999999999875 244567777877776543
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.63 E-value=2.3e-15 Score=163.95 Aligned_cols=206 Identities=17% Similarity=0.094 Sum_probs=148.1
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..|+|++|+..|++++.......+..+|..+..+.++|.+|..+|+|++|+..|++++++.+... .++
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~-------- 470 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW----RLV-------- 470 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH----HHH--------
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH----HHH--------
Confidence 57899999999999995554555566788888999999999999999999999999876654321 011
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH 237 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~ 237 (441)
...|.++..+|+|++|+..|++++...+....+..++|.++.
T Consensus 471 --------------------------------------~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 471 --------------------------------------WYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAE 512 (681)
T ss_dssp --------------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 134666778888888888888888866666677788888888
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
.+|+|++ +..|++|+++ .- . ...++++||.+|..+|+|++|++.|++|+++
T Consensus 513 ~~g~~~~-~~~~~~al~~---~P-----~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------- 563 (681)
T 2pzi_A 513 LAGNTDE-HKFYQTVWST---ND-----G------------VISAAFGLARARSAEGDRVGAVRTLDEVPPT-------- 563 (681)
T ss_dssp HHTCCCT-TCHHHHHHHH---CT-----T------------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------
T ss_pred HcCChHH-HHHHHHHHHh---CC-----c------------hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------
Confidence 8899988 8899988887 11 1 1235788899999999998888888888753
Q ss_pred CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcc
Q 013549 318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEG 367 (441)
Q Consensus 318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~ 367 (441)
.|.....+.|+|.+|...|+.+++ ++.-+++|++.++...++.|.
T Consensus 564 ~P~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 564 SRHFTTARLTSAVTLLSGRSTSEV-----TEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp STTHHHHHHHHHHHTC-------C-----CHHHHHHHHHHHHTSCTTSTT
T ss_pred CcccHHHHHHHHHHHHccCCCCCC-----CHHHHHHHHHHHhhCCCCcHH
Confidence 477777888888888777765554 256677777777654444444
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=2.3e-14 Score=124.87 Aligned_cols=171 Identities=18% Similarity=0.210 Sum_probs=129.7
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~ 183 (441)
....+..+.++|.++..+|+|++|+..+++++...+.. ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~---------------------------------- 45 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD----VDVA---------------------------------- 45 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC----HHHH----------------------------------
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC----hHHH----------------------------------
Confidence 44567889999999999999999999988864433211 0011
Q ss_pred chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549 184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS 263 (441)
Q Consensus 184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~ 263 (441)
...+.++..+|++++|..+|++++...+....+...+|.++..+|++++|..+|++++.+. ..
T Consensus 46 ------------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~-- 108 (186)
T 3as5_A 46 ------------LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN---PI-- 108 (186)
T ss_dssp ------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT--
T ss_pred ------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---cH--
Confidence 1235566678888888888888888655566677788888889999999999999988871 11
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhh
Q 013549 264 DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSA 343 (441)
Q Consensus 264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~ 343 (441)
....+.++|.+|..+|+|++|+++|++++.+. |....++.++|.+|..+|++++|
T Consensus 109 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A-- 163 (186)
T 3as5_A 109 ---------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--------PNEGKVHRAIAFSYEQMGRHEEA-- 163 (186)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHH--
T ss_pred ---------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------ccchHHHHHHHHHHHHcCCHHHH--
Confidence 12346788999999999999999999988763 44456778889999999998887
Q ss_pred hHHHHHHHHHHHHHh
Q 013549 344 LLIQEGLYRRALEFL 358 (441)
Q Consensus 344 ~~~Ae~ly~rAL~i~ 358 (441)
...|++++++.
T Consensus 164 ----~~~~~~~~~~~ 174 (186)
T 3as5_A 164 ----LPHFKKANELD 174 (186)
T ss_dssp ----HHHHHHHHHHH
T ss_pred ----HHHHHHHHHcC
Confidence 78888888875
No 90
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=9e-14 Score=135.46 Aligned_cols=222 Identities=14% Similarity=0.089 Sum_probs=168.8
Q ss_pred HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHH-hhhhhhhhhHH
Q 013549 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLY-------ESGNY-------VEAIEKLQKVEN-FKNSILGVRVA 147 (441)
Q Consensus 83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~-------~qG~y-------~eA~e~~~ral~-i~~~~lg~~~~ 147 (441)
++|+.+|++++.+. |.....+.++|.++. .+|++ ++|+..|++++. +.+.. ..
T Consensus 33 ~~a~~~~~~al~~~--------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~ 100 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----ML 100 (308)
T ss_dssp HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HH
T ss_pred HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc----HH
Confidence 79999999999743 445667888888876 46986 999999999998 55543 23
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchH
Q 013549 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGS 227 (441)
Q Consensus 148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~ 227 (441)
.+.+++.++..+|++++|...+++++++ .+.. .. .+....+.++..+|++++|...|++++...+....
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~---~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAI----EDID---PT----LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS----SSSC---TH----HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----cccC---cc----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 6888999999999999999999999753 2211 11 01223456667899999999999999995555545
Q ss_pred HHHHHHHHHH-HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 228 AALSYGEYLH-ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 228 ~a~~~a~~~~-~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
+...++.+.. .+|++++|..+|+++|++. -. ......++|.++..+|++++|..+|++|
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p~-----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKY---GD-----------------IPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TT-----------------CHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555433 4799999999999999983 11 1235689999999999999999999999
Q ss_pred HHHHHHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 307 LTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 307 L~i~e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+... +-.|+ -.....+++.++...|++++| ..+++|++++.
T Consensus 230 l~~~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a------~~~~~~a~~~~ 271 (308)
T 2ond_A 230 LTSG-----SLPPEKSGEIWARFLAFESNIGDLASI------LKVEKRRFTAF 271 (308)
T ss_dssp HHSS-----SSCGGGCHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHT
T ss_pred Hhcc-----CCCHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHc
Confidence 8741 11343 455677888999999999887 88999998886
No 91
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.60 E-value=9.8e-14 Score=117.80 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=118.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhc---cCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcc
Q 013549 196 AVKGLVELAHGNLESAESFFKGLQEE---EGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLG 269 (441)
Q Consensus 196 al~gl~~~~qG~y~eAe~l~~~aL~~---~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg 269 (441)
...|.++..+|+|++|+.+|++++.. .... ..+...+|.++..+|+|++|+.+|++++++......
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------- 84 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-------- 84 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 34677888999999999999999982 1111 234567899999999999999999999999643211
Q ss_pred ccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHH
Q 013549 270 SCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEG 349 (441)
Q Consensus 270 ~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ 349 (441)
+ .....++.++|.+|..+|+|++|++++++++.+.++. .+++..+.++.++|.+|..+|++++| ..
T Consensus 85 -----~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A------~~ 150 (164)
T 3ro3_A 85 -----R-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQA------MH 150 (164)
T ss_dssp -----H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH------HH
T ss_pred -----c-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHH------HH
Confidence 1 1134567899999999999999999999999998875 35688899999999999999999987 89
Q ss_pred HHHHHHHHhhc
Q 013549 350 LYRRALEFLKA 360 (441)
Q Consensus 350 ly~rAL~i~~~ 360 (441)
.+++++++.+.
T Consensus 151 ~~~~a~~~~~~ 161 (164)
T 3ro3_A 151 FAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 92
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.59 E-value=1.7e-13 Score=126.35 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=127.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccC-CchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEG-CTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL 275 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~-~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~ 275 (441)
..|..+..+|+|++|+.+|++++...+ ....+..++|.++..+|+|++|+..|++|+.+ ..
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p--------------- 73 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NY--------------- 73 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TC---------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---Cc---------------
Confidence 468888899999999999999999554 55567778999999999999999999999977 11
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch----HHHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Q 013549 276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK----VGVVLTCLALMFRNKAMQEHSSALLIQEGLY 351 (441)
Q Consensus 276 ~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~----va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly 351 (441)
. ...++.++|.+|..+|+|++|+..|++++.+. |++|. .+.++.++|.+|..+|++++| +..|
T Consensus 74 ~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A------~~~~ 140 (228)
T 4i17_A 74 N--LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKA------EENY 140 (228)
T ss_dssp S--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHH------HHHH
T ss_pred c--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHH------HHHH
Confidence 1 23467899999999999999999999999864 56663 457899999999999999987 8999
Q ss_pred HHHHHHhhcCCCCCcc--hHhhhccHHHHHHHhccH
Q 013549 352 RRALEFLKAPPLESEG--VETKVDRTDIVALARGGY 385 (441)
Q Consensus 352 ~rAL~i~~~~~~~~~~--~~~~l~nl~~~~~~~g~y 385 (441)
++++++ .|+ ....+.+++.++..+|+.
T Consensus 141 ~~al~~-------~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 141 KHATDV-------TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHTTS-------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-------CCCcccHHHHHHHHHHHHHHHHH
Confidence 999775 355 567788999999988876
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=4.2e-13 Score=116.83 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=128.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..+..+..+|++++|..+|++++...+....+...+|.++..+|++++|..+|++++++ ...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~--------------- 74 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APD--------------- 74 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---------------
Confidence 35777889999999999999999966666677788899999999999999999999987 111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
...++.++|.+|..+|++++|.++|++++.+ +|.....+.++|.+|..+|++++| ...|+++++
T Consensus 75 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~ 138 (186)
T 3as5_A 75 --NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEA------IDSFKIALG 138 (186)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHH------HHHHHHHHh
Confidence 1235789999999999999999999999987 455557789999999999999987 889999988
Q ss_pred HhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 357 FLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 357 i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
+. ++. .....+++.++..+|+|++|+...
T Consensus 139 ~~----~~~---~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 139 LR----PNE---GKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HC----TTC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cC----ccc---hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 73 222 346668889999999888777664
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.55 E-value=1.6e-14 Score=126.74 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=113.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
+|.++..+|++++|+..|++++...+..+.+.+.+|.+|..+|+|++|+..|++||++ .. +
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p---------------~- 63 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QE---------------R- 63 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---------------T-
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC---------------C-
Confidence 3666778999999999999999966656667788999999999999999999999998 11 1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
...++.+||.+|..+|+|++|+..|++|+++ .|.-..++.+||.+|..+|++++| ++.++++|+++
T Consensus 64 -~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a-----a~~~~~~al~l 129 (150)
T 4ga2_A 64 -DPKAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGR-----AKYWVERAAKL 129 (150)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSH-----HHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHH-----HHHHHHHHHHh
Confidence 1246889999999999999999999999987 355556789999999999999886 35667999887
Q ss_pred hhcCCCCCcchHhhhccHHHHHHHhc
Q 013549 358 LKAPPLESEGVETKVDRTDIVALARG 383 (441)
Q Consensus 358 ~~~~~~~~~~~~~~l~nl~~~~~~~g 383 (441)
.|++|.+. ...+.++..+|
T Consensus 130 ----~P~~~~~~---~l~~~ll~~~G 148 (150)
T 4ga2_A 130 ----FPGSPAVY---KLKEQLLDCEG 148 (150)
T ss_dssp ----STTCHHHH---HHHHHHHHTCC
T ss_pred ----CcCCHHHH---HHHHHHHHHhC
Confidence 35666533 33344444443
No 95
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.54 E-value=4.1e-13 Score=113.88 Aligned_cols=143 Identities=17% Similarity=0.060 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.+...+|.++..+|+|++|+.+|++++++...... + .....++.++|.+|..+|+|++|.++|+++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------K-AAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-------------c-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567799999999999999999999999643211 1 123457889999999999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHH
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYA 386 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~ya 386 (441)
+.+.++. .+++..+.++.++|.+|..+|++++| ...+++++++.+.. .+++.....+.+++.++..+|+|+
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 76 LLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKA------IDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHH
Confidence 9999876 45677789999999999999999987 89999999998653 244556777889999999999998
Q ss_pred HHHHHh
Q 013549 387 EALSVQ 392 (441)
Q Consensus 387 eal~~~ 392 (441)
+|+...
T Consensus 147 ~A~~~~ 152 (164)
T 3ro3_A 147 QAMHFA 152 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 96
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=8.8e-13 Score=136.41 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHhhhhccCCchHHHHHHHHH-H--HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 206 GNLESAESFFKGLQEEEGCTGSAALSYGEY-L--HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 206 G~y~eAe~l~~~aL~~~~~~~~~a~~~a~~-~--~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
+++++|..+|+++. +..+.+..++|.+ + ...|++++|..+|++|++. + ...+
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g-----------------~~~A 285 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D-----------------QPRA 285 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T-----------------CHHH
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C-----------------CHHH
Confidence 35555555555555 2234455555555 3 3456666666666665533 1 0134
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----hhchhhhhhhHHHHHHHHH
Q 013549 283 TFALGQLEAHMG-----NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRR 353 (441)
Q Consensus 283 l~nLg~ly~~qG-----~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~----qG~~eeA~~~~~Ae~ly~r 353 (441)
+++||.+|. .| ++++|..+|++|. +.|| ..+.+||.+|.. ..++++| ..+|++
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~~---~A~~~Lg~~y~~G~g~~~d~~~A------~~~~~~ 347 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GREV---AADYYLGQIYRRGYLGKVYPQKA------LDHLLT 347 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTCH---HHHHHHHHHHHTTTTSSCCHHHH------HHHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCCH---HHHHHHHHHHHCCCCCCcCHHHH------HHHHHH
Confidence 566666665 55 6666666666655 2333 456666666655 1244433 556666
Q ss_pred HHHHhhcCCCCCcchHhhhccHHHHHHH----hccHHHHHHHhh
Q 013549 354 ALEFLKAPPLESEGVETKVDRTDIVALA----RGGYAEALSVQQ 393 (441)
Q Consensus 354 AL~i~~~~~~~~~~~~~~l~nl~~~~~~----~g~yaeal~~~~ 393 (441)
|.+ .+++ ....|++.+|.. ..++.+|+.++.
T Consensus 348 Aa~------~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 348 AAR------NGQN---SADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHT------TTCT---THHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHh------hChH---HHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 543 2333 244566776653 236666666653
No 97
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=8.1e-13 Score=128.67 Aligned_cols=190 Identities=11% Similarity=0.046 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013549 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ 161 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~ 161 (441)
+++|+.+|++|+... +|.-.....++|.++..+|++++|+..|++++.+.+.... .++.+++.++..+|+
T Consensus 80 ~~~A~~~~~rAl~~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~ 149 (308)
T 2ond_A 80 SDEAANIYERAISTL-------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEG 149 (308)
T ss_dssp HHHHHHHHHHHHTTT-------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcC
Confidence 599999999999732 3445678999999999999999999999999987654221 167888999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHH---HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 013549 162 DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVEL---AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA 238 (441)
Q Consensus 162 ~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~---~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~ 238 (441)
+++|..++++++.+. +..+ .. ..+.+.. .+|++++|..+|++++...+....+..+++.++..
T Consensus 150 ~~~A~~~~~~a~~~~----p~~~---~~-------~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 150 IKSGRMIFKKAREDA----RTRH---HV-------YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHTST----TCCT---HH-------HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC----CCCH---HH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999886431 2111 11 1122222 37999999999999999766677788999999999
Q ss_pred ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549 239 TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE 311 (441)
Q Consensus 239 qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e 311 (441)
+|++++|..+|++|+.. .. +. |+. ......+++.++...|++++|+.++.+++++.-
T Consensus 216 ~g~~~~A~~~~~~al~~---~~-------l~-----p~~-~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTS---GS-------LP-----PEK-SGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp TCCHHHHHHHHHHHHHS---SS-------SC-----GGG-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc---cC-------CC-----HHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 99999999999999985 10 11 110 123457889999999999999999999998764
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.50 E-value=1e-12 Score=120.95 Aligned_cols=182 Identities=13% Similarity=0.081 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
+..+...|..+..+|+|++|+..|++++.+.+.... ++..+ ...+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~-----~~~~~~------------------------ 50 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE----MYYWT-----NVDKNS------------------------ 50 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH----HHHHH-----HSCTTS------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----HHHHh-----hhcchh------------------------
Confidence 456788999999999999999999999888765321 11111 111110
Q ss_pred hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCC
Q 013549 188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNT 267 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~ 267 (441)
.+........|.++..+|+|++|+..|++++...+....+..++|.++..+|+|++|+..|++++++ .
T Consensus 51 -~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~-------- 118 (208)
T 3urz_A 51 -EISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---E-------- 118 (208)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C--------
T ss_pred -hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C--------
Confidence 0111111235788889999999999999999977778888899999999999999999999999998 1
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhH
Q 013549 268 LGSCNMALEEVALAATFALGQLEAHMGNFG--DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALL 345 (441)
Q Consensus 268 lg~~~~~~~~~~~~al~nLg~ly~~qG~y~--eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~ 345 (441)
|+ ...++++||.+|..+|+.+ +++..|.++ .-+. .......++|..+..+|+|++|
T Consensus 119 -------P~--~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~a~~~~g~~~~~~~~~~~A---- 176 (208)
T 3urz_A 119 -------AD--NLAANIFLGNYYYLTAEQEKKKLETDYKKL-------SSPT--KMQYARYRDGLSKLFTTRYEKA---- 176 (208)
T ss_dssp -------TT--CHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCC--HHHHHHHHHHHHHHHHHTHHHH----
T ss_pred -------CC--CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------hCCC--chhHHHHHHHHHHHHccCHHHH----
Confidence 11 1246889999998877543 444445444 3332 2334567789999999999887
Q ss_pred HHHHHHHHHHHHh
Q 013549 346 IQEGLYRRALEFL 358 (441)
Q Consensus 346 ~Ae~ly~rAL~i~ 358 (441)
+..|++|+++.
T Consensus 177 --~~~~~~al~l~ 187 (208)
T 3urz_A 177 --RNSLQKVILRF 187 (208)
T ss_dssp --HHHHHHHTTTS
T ss_pred --HHHHHHHHHhC
Confidence 89999998764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.50 E-value=1.2e-12 Score=126.98 Aligned_cols=167 Identities=17% Similarity=0.074 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcch
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~ 185 (441)
.-...+..+|..+..+|++++|+..|++++.+.+... .++.+|+.++
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~----------------------------- 161 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETL----------------------------- 161 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHH-----------------------------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHH-----------------------------
Confidence 4556788999999999999999999999987766532 2334444444
Q ss_pred hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549 186 TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 265 (441)
Q Consensus 186 ~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~ 265 (441)
..+|++++|+.+|++++...+.........+..+..+|++++|+..|+++++..
T Consensus 162 -----------------~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------- 215 (287)
T 3qou_A 162 -----------------IALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------- 215 (287)
T ss_dssp -----------------HHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC---------
T ss_pred -----------------HHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC---------
Confidence 455555555555555555333222222223333445555555555555555540
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH--HHHHHHHHHHHHHhhchhhhhh
Q 013549 266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV--GVVLTCLALMFRNKAMQEHSSA 343 (441)
Q Consensus 266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v--a~~l~nLa~ly~~qG~~eeA~~ 343 (441)
|+ ...+..+||.+|..+|++++|+..|++++.+ +|.. .....+|+.+|..+|+.++|
T Consensus 216 ---------P~--~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~a-- 274 (287)
T 3qou_A 216 ---------PE--DAALATQLALQLHQVGRNEEALELLFGHLRX--------DLTAADGQTRXTFQEILAALGTGDAL-- 274 (287)
T ss_dssp ---------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTGGGGHHHHHHHHHHHHHCTTCHH--
T ss_pred ---------Cc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------ccccccchHHHHHHHHHHHcCCCCcH--
Confidence 00 0123455555555555555555555555553 2333 34455555555555555544
Q ss_pred hHHHHHHHHHHHH
Q 013549 344 LLIQEGLYRRALE 356 (441)
Q Consensus 344 ~~~Ae~ly~rAL~ 356 (441)
...|+|+|.
T Consensus 275 ----~~~~r~al~ 283 (287)
T 3qou_A 275 ----ASXYRRQLY 283 (287)
T ss_dssp ----HHHHHHHHH
T ss_pred ----HHHHHHHHH
Confidence 455555554
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.50 E-value=7.4e-13 Score=121.91 Aligned_cols=155 Identities=16% Similarity=0.102 Sum_probs=117.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHH----------------HHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALS----------------YGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~----------------~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
.|..+..+|+|++|+.+|++++...+....+... +|.+|..+|+|++|+..|+++|++ .
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~-- 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---A-- 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C--
Confidence 4677789999999999999999965555555556 899999999999999999999998 1
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
|+ ...++.+||.+|..+|+|++|++.|++++.+ +|+-..++.+||.+|..+|+.+.+
T Consensus 85 -------------p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 85 -------------PN--NVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp -------------TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHHH
Confidence 11 1346889999999999999999999999986 455567899999999988865443
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 342 SALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 342 ~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
.++..|++++ .+ .|. .....+++.++...|+|++|+...
T Consensus 142 ----~~~~~~~~~~------~~-~~~-~~a~~~~g~~~~~~~~~~~A~~~~ 180 (208)
T 3urz_A 142 ----KLETDYKKLS------SP-TKM-QYARYRDGLSKLFTTRYEKARNSL 180 (208)
T ss_dssp ----HHHHHHC---------CC-CHH-HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ----HHHHHHHHHh------CC-Cch-hHHHHHHHHHHHHccCHHHHHHHH
Confidence 2244444432 11 122 223446788888889999988765
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.49 E-value=1.2e-13 Score=121.20 Aligned_cols=147 Identities=9% Similarity=0.017 Sum_probs=110.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHh
Q 013549 113 AMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNS 192 (441)
Q Consensus 113 nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~ 192 (441)
+||.++..+|++++|++.+++++...+... .
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~---------------------------------------------~---- 32 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKS---------------------------------------------I---- 32 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHH---------------------------------------------T----
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccH---------------------------------------------H----
Confidence 578888888999999888888754433210 0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 013549 193 RANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN 272 (441)
Q Consensus 193 ~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~ 272 (441)
.....|.+|..+|+|++|+.+|++++...+....+..++|.+|..+|++++|+..|++|+++ .-
T Consensus 33 -~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p------------ 96 (150)
T 4ga2_A 33 -KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL---NP------------ 96 (150)
T ss_dssp -THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT------------
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CC------------
Confidence 00124667788999999999999999977778888899999999999999999999999998 11
Q ss_pred cchhHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549 273 MALEEVALAATFALGQLEAHMGNFGDAEEI-LTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337 (441)
Q Consensus 273 ~~~~~~~~~al~nLg~ly~~qG~y~eAe~l-~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~ 337 (441)
+ ...++.+||.+|..+|++++|.+. +++|+.+ -|+||.+ +...+.++..+|+
T Consensus 97 ---~--~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~~~~~---~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 97 ---T--QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPGSPAV---YKLKEQLLDCEGE 149 (150)
T ss_dssp ---T--CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STTCHHH---HHHHHHHHHTCCC
T ss_pred ---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcCCHHH---HHHHHHHHHHhCc
Confidence 1 124678999999999999887665 5899975 4777765 5566788888775
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.47 E-value=1.3e-12 Score=121.44 Aligned_cols=175 Identities=15% Similarity=0.111 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
+..+.++|..+..+|+|++|+..|++++...+.. .....++..++.+|..+|++++|...+++++++.-... .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~----~-- 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP----N-- 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----T--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC----c--
Confidence 5678999999999999999999999998876543 11234778899999999999999999998875432211 0
Q ss_pred hhhHhHHHHHHHHHHH------------------HcCCHHHHHHHHHhhhhccCCchHHH-----------------HHH
Q 013549 188 GAVNSRANAVKGLVEL------------------AHGNLESAESFFKGLQEEEGCTGSAA-----------------LSY 232 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~------------------~qG~y~eAe~l~~~aL~~~~~~~~~a-----------------~~~ 232 (441)
...+....|.++. .+|++++|...|++++...+....+. ..+
T Consensus 77 ---~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 77 ---IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV 153 (225)
T ss_dssp ---HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112223444443 37899999999999999444332111 356
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
|.+|..+|+|++|+..|++++++. .+ . + ....++..+|.+|..+|++++|++.+++++..
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~---p~-----~-------~--~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDY---PD-----T-------Q--ATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS---TT-----S-------H--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHC---cC-----C-------C--ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 888999999999999999999982 11 1 1 01246889999999999999999999877653
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.44 E-value=2.3e-13 Score=121.57 Aligned_cols=170 Identities=10% Similarity=-0.029 Sum_probs=128.7
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (441)
Q Consensus 105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~ 184 (441)
|+-...+..+|..+..+|+|++|+..|++++.+.+.. ..++.+++.++..+|++++|...+++++.+. + .+
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~~ 73 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEY----Q-DN 73 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-CH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-Ch
Confidence 3334568899999999999999999999998887654 2478899999999999999988877664221 1 10
Q ss_pred hhhhhhHhHHHHHHHHH-HHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549 185 KTYGAVNSRANAVKGLV-ELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS 263 (441)
Q Consensus 185 ~~~~~l~~~a~al~gl~-~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~ 263 (441)
....+.+.+ ...+++..+|+..|++++...+....+..++|.++..+|++++|+..|++++++ ..
T Consensus 74 --------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p--- 139 (176)
T 2r5s_A 74 --------SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV---NL--- 139 (176)
T ss_dssp --------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CT---
T ss_pred --------HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---Cc---
Confidence 111122222 223455567899999999977777888899999999999999999999999877 11
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 264 DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
. .. ...+..+||.+|..+|++++|...|+++|.-
T Consensus 140 --~-~~---------~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 140 --G-AQ---------DGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp --T-TT---------TTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred --c-cC---------hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 1 00 1135689999999999999999999999864
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.43 E-value=4.7e-13 Score=145.69 Aligned_cols=154 Identities=15% Similarity=0.065 Sum_probs=123.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|.++..+|+|++|+..|++++...+....+..++|.+|..+|+|++|+..|++|+++ .-. .
T Consensus 438 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~-----~--------- 500 (681)
T 2pzi_A 438 MEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPG-----E--------- 500 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STT-----C---------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----C---------
Confidence 45777889999999999999999977777788889999999999999999999999998 111 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
..++++||.+|..+|+|++ ++.|++|+++ .|.....+.|||.+|..+|++++| ...|++|++
T Consensus 501 ---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~ 562 (681)
T 2pzi_A 501 ---LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAFGLARARSAEGDRVGA------VRTLDEVPP 562 (681)
T ss_dssp ---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHTSCT
T ss_pred ---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHHHHHHHHHHcCCHHHH------HHHHHhhcc
Confidence 2357899999999999999 9999999986 455566899999999999999887 777877755
Q ss_pred HhhcCCCCCcchHhhhccHHHHHHHh--------ccHHHHHHHh
Q 013549 357 FLKAPPLESEGVETKVDRTDIVALAR--------GGYAEALSVQ 392 (441)
Q Consensus 357 i~~~~~~~~~~~~~~l~nl~~~~~~~--------g~yaeal~~~ 392 (441)
+ .|+......|++.+++.. +++.+|+...
T Consensus 563 l-------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 563 T-------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp T-------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred c-------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 4 244445666788887553 3466666543
No 105
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.43 E-value=1.8e-12 Score=134.14 Aligned_cols=78 Identities=8% Similarity=0.014 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNY---VEAIEKLQKVENFKNSILGVRVAAMEALAGL 155 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y---~eA~e~~~ral~i~~~~lg~~~~al~~La~l 155 (441)
.|++++|+.+|+++.... + ..++.+||.+|...|++ ++|++.|+++++.. ..+..+|+.+
T Consensus 16 ~g~~~~A~~~~~~aa~~g-------~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~-------~~A~~~Lg~~ 78 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG-------Y---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS-------PRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT-------C---CTGGGTCC-----------------------------------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-------C---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC-------HHHHHHHHHH
Confidence 466666666666665421 1 12345566666666665 56666666665441 1134445553
Q ss_pred HHhcC-----CcchhHHHHHHHH
Q 013549 156 YLQLG-----QDDTSSVVADKCL 173 (441)
Q Consensus 156 ~~~~G-----~~~~A~~l~~~~L 173 (441)
+...| ++.+|..++++++
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa 101 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAF 101 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHH
Confidence 33333 3445555555543
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.41 E-value=9.8e-12 Score=114.99 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=137.7
Q ss_pred HHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC---
Q 013549 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG--- 160 (441)
Q Consensus 84 eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G--- 160 (441)
+|+.+|+++.+. .-+.++.+||.+|..+|++++|++.|+++.+... ..++.+|+.+|.. +
T Consensus 4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~------~~a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD------GDALALLAQLKIR-NPQQ 66 (212)
T ss_dssp CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHTTS-STTS
T ss_pred hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHc-CCCC
Confidence 788999999863 2356799999999999999999999999976432 2478889999887 6
Q ss_pred -CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH----cCCHHHHHHHHHhhhhccC--CchHHHHHHH
Q 013549 161 -QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA----HGNLESAESFFKGLQEEEG--CTGSAALSYG 233 (441)
Q Consensus 161 -~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~----qG~y~eAe~l~~~aL~~~~--~~~~~a~~~a 233 (441)
++.+|..+++++.+ ... ..+...+|.+|.. .+++++|..+|+++.+..+ ..+.+..++|
T Consensus 67 ~~~~~A~~~~~~A~~---~g~-----------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg 132 (212)
T 3rjv_A 67 ADYPQARQLAEKAVE---AGS-----------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLG 132 (212)
T ss_dssp CCHHHHHHHHHHHHH---TTC-----------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---CCC-----------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 88999999988842 111 1222345677765 8899999999999999554 2467889999
Q ss_pred HHHHH----ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc-C-----CHHHHHHHH
Q 013549 234 EYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM-G-----NFGDAEEIL 303 (441)
Q Consensus 234 ~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q-G-----~y~eAe~l~ 303 (441)
.+|.. .+++++|+.+|++|++. .+ + ..++++||.+|... | ++++|..+|
T Consensus 133 ~~y~~g~g~~~d~~~A~~~~~~A~~~----~~----~-------------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~ 191 (212)
T 3rjv_A 133 LIYASGVHGPEDDVKASEYFKGSSSL----SR----T-------------GYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191 (212)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHT----SC----T-------------THHHHHHHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHc----CC----C-------------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 99998 88999999999999875 11 0 12578999999865 3 899999999
Q ss_pred HHHHHH
Q 013549 304 TRTLTK 309 (441)
Q Consensus 304 ~rAL~i 309 (441)
++|.+.
T Consensus 192 ~~A~~~ 197 (212)
T 3rjv_A 192 NVSCLE 197 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999876
No 107
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.40 E-value=4e-12 Score=108.36 Aligned_cols=103 Identities=12% Similarity=0.137 Sum_probs=89.9
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
..++|..+..+|+|++|+..|++||++ . |+ ...+++|+|.+|..+|+|++|++.|++||.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~---~---------------p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL---D---------------PS--NITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---C---------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---C---------------CC--CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 356899999999999999999999998 1 11 134689999999999999999999999999
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+... ....|+.++.++.++|.+|..+|++++| ...|+++|++.
T Consensus 71 ~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~~~A------~~~~~kal~~~ 113 (127)
T 4gcn_A 71 VGRE-TRADYKLIAKAMSRAGNAFQKQNDLSLA------VQWFHRSLSEF 113 (127)
T ss_dssp HHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred hCcc-cchhhHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhC
Confidence 9765 4557888999999999999999999987 89999998863
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.40 E-value=3.1e-12 Score=124.06 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=130.2
Q ss_pred HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhh
Q 013549 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSIL 142 (441)
Q Consensus 63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~l 142 (441)
..+.++|..+. ..|++++|+..|++++.+. |++ ...+.+||.+|..+|++++|+..|++++...+...
T Consensus 118 ~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~-----P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 118 ELXAQQAMQLM----QESNYTDALPLLXDAWQLS-----NQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHT-----TSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred hhHHHHHHHHH----hCCCHHHHHHHHHHHHHhC-----Ccc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 34456666653 4689999999999999854 344 56799999999999999999999998754433210
Q ss_pred hhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Q 013549 143 GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEE 222 (441)
Q Consensus 143 g~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~ 222 (441)
......++.+..+|++++|+..|++++...
T Consensus 186 --------------------------------------------------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~ 215 (287)
T 3qou_A 186 --------------------------------------------------YQGLVAQIELLXQAADTPEIQQLQQQVAEN 215 (287)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred --------------------------------------------------HHHHHHHHHHHhhcccCccHHHHHHHHhcC
Confidence 000122444557888999999999999977
Q ss_pred CCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 013549 223 GCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEI 302 (441)
Q Consensus 223 ~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l 302 (441)
+....+..++|.+|..+|++++|+..|++++.+ ... . ....+..+|+.+|..+|+.++|...
T Consensus 216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~-----~----------~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 216 PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLT-----A----------ADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----G----------GGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccc-----c----------ccchHHHHHHHHHHHcCCCCcHHHH
Confidence 778888999999999999999999999999998 111 1 0124578999999999999999999
Q ss_pred HHHHHHH
Q 013549 303 LTRTLTK 309 (441)
Q Consensus 303 ~~rAL~i 309 (441)
|+++|..
T Consensus 278 ~r~al~~ 284 (287)
T 3qou_A 278 YRRQLYA 284 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 109
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.4e-11 Score=128.68 Aligned_cols=223 Identities=13% Similarity=0.107 Sum_probs=168.1
Q ss_pred HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHH-hhhhhhhhhHH
Q 013549 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-------SGNYV-------EAIEKLQKVEN-FKNSILGVRVA 147 (441)
Q Consensus 83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-------qG~y~-------eA~e~~~ral~-i~~~~lg~~~~ 147 (441)
.+++.+|++++... |.......++|.++.. +|+++ +|+..|++++. +.+.. ..
T Consensus 255 ~~a~~~y~~al~~~--------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~----~~ 322 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----ML 322 (530)
T ss_dssp HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC----HH
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc----HH
Confidence 58889999999753 3446778899999886 89998 99999999986 55432 34
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchH
Q 013549 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGS 227 (441)
Q Consensus 148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~ 227 (441)
.+.+++.++..+|++++|..++++++++ .+..+ . ......+..+..+|++++|..+|++++...+....
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~---~----~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI----EDIDP---T----LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS----SSSCH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc----cccCc---h----HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 6788999999999999999999999753 22110 0 11223345556799999999999999996554433
Q ss_pred HHHHHHHH-HHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 228 AALSYGEY-LHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 228 ~a~~~a~~-~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.....+.+ +..+|++++|..+|+++|++. .. ......+++.++..+|++++|..+|++|
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~---p~-----------------~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY---GD-----------------IPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH---TT-----------------CHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC---CC-----------------CHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 43444433 346999999999999999882 11 1234689999999999999999999999
Q ss_pred HHHHHHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 307 LTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 307 L~i~e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
+.. ++..|. ....+..........|+.+++ ..+++|+++...
T Consensus 452 l~~-----~~~~~~~~~~lw~~~~~~e~~~G~~~~~------~~~~~r~~~~~p 494 (530)
T 2ooe_A 452 LTS-----GSLPPEKSGEIWARFLAFESNIGDLASI------LKVEKRRFTAFR 494 (530)
T ss_dssp HHS-----CCSCGGGCHHHHHHHHHHHHHSSCHHHH------HHHHHHHHHHTH
T ss_pred Hhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHCc
Confidence 875 566775 344566667788888998876 889999998873
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.39 E-value=2.8e-12 Score=135.36 Aligned_cols=127 Identities=15% Similarity=0.063 Sum_probs=81.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|.++..+|+|++|+..|++++...+....+..++|.+|..+|+|++|+.+|++++++ ...
T Consensus 28 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~--------------- 89 (568)
T 2vsy_A 28 MLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA---APE--------------- 89 (568)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCC---------------
Confidence 34556666777777777777777755555556666677777777777777777777766 110
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh---hchhhhhhhHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK---AMQEHSSALLIQEGLYRR 353 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q---G~~eeA~~~~~Ae~ly~r 353 (441)
...++.+||.+|..+|+|++|+++|++++++ +|.....+.++|.+|..+ |++++| ...|++
T Consensus 90 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~g~~~~A------~~~~~~ 153 (568)
T 2vsy_A 90 --HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQLLNWRRRLCDWRALDVL------SAQVRA 153 (568)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCTTHHHH------HHHHHH
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhccccHHHH------HHHHHH
Confidence 0234567777777777777777777777765 334445666777777777 666655 666777
Q ss_pred HHHH
Q 013549 354 ALEF 357 (441)
Q Consensus 354 AL~i 357 (441)
++++
T Consensus 154 al~~ 157 (568)
T 2vsy_A 154 AVAQ 157 (568)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.39 E-value=1.6e-11 Score=113.99 Aligned_cols=183 Identities=10% Similarity=0.003 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCch
Q 013549 147 AAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTG 226 (441)
Q Consensus 147 ~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~ 226 (441)
..+.+++..+..+|++++|...+++++...-... ....+....|.++..+|+|++|+..|++++...+...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP---------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST---------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 3567788888999999999999998875421111 1112233468888899999999999999999544433
Q ss_pred ---HHHHHHHHHHHH------------------ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc-h---hHHHHH
Q 013549 227 ---SAALSYGEYLHA------------------TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA-L---EEVALA 281 (441)
Q Consensus 227 ---~~a~~~a~~~~~------------------qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~-~---~~~~~~ 281 (441)
.+...+|.++.. +|++++|+..|+++++.. - +. ..+..... . ......
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P---~~-~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---P---NS-QYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---T---TC-TTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---c---CC-hhHHHHHHHHHHHHHHHHH
Confidence 345556666654 689999999999998762 1 11 11100000 0 000001
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
....+|.+|..+|+|++|...|+++++++ |+.|.....+.++|.+|..+|++++| ...+++++.
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A------~~~~~~l~~ 212 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQA------EKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHH------HHHHHHHHh
Confidence 12578999999999999999999999876 66788889999999999999999987 677776543
No 112
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.39 E-value=2.7e-12 Score=125.80 Aligned_cols=225 Identities=16% Similarity=0.087 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHH-------HHHHHHcCChHHHHHHHH
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAM-------STLLYESGNYVEAIEKLQ 132 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nL-------a~l~~~qG~y~eA~e~~~ 132 (441)
+...+|-..|+.+ + .+++++|+.+|.+++. .+|+.+...+++ +.++...+++.+++..++
T Consensus 5 ~~~~~~~~~~~~~-~----~~d~~~A~~~F~~a~~--------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~ 71 (282)
T 4f3v_A 5 DRLASLFESAVSM-L----PMSEARSLDLFTEITN--------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS 71 (282)
T ss_dssp HHHHHHHHHHHHH-T----TTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH
T ss_pred HHHHHHHHHHhcc-c----CCCHHHHHHHHHHHHH--------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 4566777777776 2 4789999999999997 467789999999 899999999999999999
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHH
Q 013549 133 KVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAE 212 (441)
Q Consensus 133 ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe 212 (441)
+++.+.+..++... ++.++| |+..- +. ....++ ....+.++..+|+|++|.
T Consensus 72 ~~l~l~p~~l~a~~----~~~g~y---~~~~~----------------~v--~~r~dl----~LayA~~L~~~g~y~eA~ 122 (282)
T 4f3v_A 72 GSVQISMSTLNARI----AIGGLY---GDITY----------------PV--TSPLAI----TMGFAACEAAQGNYADAM 122 (282)
T ss_dssp HTTTCCGGGGCCEE----ECCTTT---CCCEE----------------EC--SSHHHH----HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCChhhhhhhh----ccCCcc---ccccc----------------cc--CCHhHH----HHHHHHHHHHCCCHHHHH
Confidence 99888877654321 111111 11000 00 000111 011244456899999999
Q ss_pred HHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 013549 213 SFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 292 (441)
Q Consensus 213 ~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~ 292 (441)
.+|++++...+... +.+.+|.++...|+|++|+.+|++++.. . + |. ....+..+||.++..
T Consensus 123 ~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~------d--------~~-~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 123 EALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW---P------D--------KF-LAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC---S------C--------HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc---C------C--------cc-cHHHHHHHHHHHHHH
Confidence 99999998655455 7788899999999999999999865433 0 0 10 122467899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 293 MGNFGDAEEILTRTLTKTEELFGSHHPK-VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 293 qG~y~eAe~l~~rAL~i~e~~lG~~HP~-va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+|+|++|+..|++++ -|+.-|. ....+.++|.++..+|+.++| ..+|++++++
T Consensus 184 LG~~~eAl~~l~~a~------~g~~~P~~~~da~~~~glaL~~lGr~deA------~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEAN------DSPAGEACARAIAWYLAMARRSQGNESAA------VALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHH------TSTTTTTTHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh------cCCCCccccHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhc
Confidence 999999999999987 3654377 777999999999999999987 8999999886
No 113
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.39 E-value=1.6e-13 Score=143.55 Aligned_cols=183 Identities=14% Similarity=0.047 Sum_probs=140.5
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~ 183 (441)
++..+..+.++|..+..+|+|++|++.|++++++.+... .+
T Consensus 2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~----~~----------------------------------- 42 (477)
T 1wao_1 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IY----------------------------------- 42 (477)
T ss_dssp CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH----HH-----------------------------------
T ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH----HH-----------------------------------
Confidence 567778888899999999999999999999876643320 01
Q ss_pred chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549 184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS 263 (441)
Q Consensus 184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~ 263 (441)
....|.++..+|+|++|+..|++++...+....+..++|.+|..+|+|++|+..|++|+++ ...
T Consensus 43 -----------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~-- 106 (477)
T 1wao_1 43 -----------YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV---KPH-- 106 (477)
T ss_dssp -----------HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STT--
T ss_pred -----------HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC--
Confidence 1134666778999999999999999977777778889999999999999999999999998 111
Q ss_pred CCCCccccccchhHHHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHHHHHhhCCCCch---HHHHHHH
Q 013549 264 DMNTLGSCNMALEEVALAATFALGQL--EAHMGNFGDAEEILT-----------RTLTKTEELFGSHHPK---VGVVLTC 327 (441)
Q Consensus 264 ~~~~lg~~~~~~~~~~~~al~nLg~l--y~~qG~y~eAe~l~~-----------rAL~i~e~~lG~~HP~---va~~l~n 327 (441)
. ..+..+++.+ +..+|+|++|+++++ +++.+.....|+.||. +...+.+
T Consensus 107 ---~------------~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~ 171 (477)
T 1wao_1 107 ---D------------KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKE 171 (477)
T ss_dssp ---C------------TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHH
T ss_pred ---C------------HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHHH
Confidence 1 1235677777 899999999999999 9999999999999998 4556666
Q ss_pred HHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 328 LALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 328 La~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
+...+..+++..+. +...++.++.++++.
T Consensus 172 lie~l~~~~~l~e~----~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 172 LMQWYKDQKKLHRK----CAYQILVQVKEVLSK 200 (477)
T ss_dssp HHHHHHTCCCCCHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHH----HHHHHHHHHHHHHcc
Confidence 66677777776654 457789999999854
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.37 E-value=6.4e-12 Score=132.57 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=103.8
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC-------CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhH
Q 013549 121 SGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG-------QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSR 193 (441)
Q Consensus 121 qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G-------~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~ 193 (441)
.|++++|++.|++++++.+.. ...+..+| ++++|..++++++++. + .. ..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p---~~-----~~ 58 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-----------FVAWLMLADAELGMGDTTAGEMAVQRGLALH----P---GH-----PE 58 (568)
T ss_dssp -------------------CC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----T---TC-----HH
T ss_pred CccHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C---CC-----HH
Confidence 589999999999997765432 36676775 4566666666665321 1 11 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 194 ANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 194 a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
+....|.++..+|+|++|+.+|++++...+....+..++|.+|..+|++++|+..|++++++ ...
T Consensus 59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~------------ 123 (568)
T 2vsy_A 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPE------------ 123 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC------------
Confidence 23346888889999999999999999976767778899999999999999999999999998 111
Q ss_pred chhHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 013549 274 ALEEVALAATFALGQLEAHM---GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLA 329 (441)
Q Consensus 274 ~~~~~~~~al~nLg~ly~~q---G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa 329 (441)
...++.+||.+|..+ |++++|.+.|++++.+ +++.. ..+..|+
T Consensus 124 -----~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~ 169 (568)
T 2vsy_A 124 -----EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ-----GVGAV---EPFAFLS 169 (568)
T ss_dssp -----CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH-----TCCCS---CHHHHTT
T ss_pred -----CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc-----CCccc---ChHHHhC
Confidence 124578999999999 9999999999999975 34444 4455555
No 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=2.3e-11 Score=99.71 Aligned_cols=128 Identities=19% Similarity=0.285 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..+.++..+|++++|+.+|++++...+....+...++.++..+|++++|+.+|++++.+ ...
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~--------------- 67 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR--------------- 67 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC---------------
Confidence 34677788999999999999999965556667778899999999999999999999987 111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
....+.++|.+|..+|+|++|..++++++.+ . |....++.++|.+|..+|++++| ...|+++++
T Consensus 68 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~ 131 (136)
T 2fo7_A 68 --SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----D---PRSAEAWYNLGNAYYKQGDYDEA------IEYYQKALE 131 (136)
T ss_dssp --CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----C---TTCHHHHHHHHHHHHTTTCHHHH------HHHHHHHHH
T ss_pred --chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----C---CCChHHHHHHHHHHHHHccHHHH------HHHHHHHHc
Confidence 1235689999999999999999999999985 2 33456788899999999999987 889999987
Q ss_pred Hh
Q 013549 357 FL 358 (441)
Q Consensus 357 i~ 358 (441)
+.
T Consensus 132 ~~ 133 (136)
T 2fo7_A 132 LD 133 (136)
T ss_dssp HS
T ss_pred cC
Confidence 63
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.36 E-value=1.1e-11 Score=112.31 Aligned_cols=133 Identities=18% Similarity=0.165 Sum_probs=110.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|..+..+|+|++|...|++++.. ...+..++|.+|..+|+|++|+..|++++.+ ...
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~--------------- 69 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDP---HSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKH--------------- 69 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Ccc---------------
Confidence 3577788999999999999999742 4567788999999999999999999999998 111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh--------CCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF--------GSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQE 348 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~l--------G~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae 348 (441)
...+++++|.+|..+|+|++|++.|++++.+....- ...+|....++.++|.+|..+|++++| .
T Consensus 70 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------~ 141 (213)
T 1hh8_A 70 --LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA------E 141 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH------H
T ss_pred --chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH------H
Confidence 124678999999999999999999999998643210 124567889999999999999999987 8
Q ss_pred HHHHHHHHHh
Q 013549 349 GLYRRALEFL 358 (441)
Q Consensus 349 ~ly~rAL~i~ 358 (441)
..|++++++.
T Consensus 142 ~~~~~al~~~ 151 (213)
T 1hh8_A 142 EQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHcC
Confidence 8999998764
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.36 E-value=1.4e-11 Score=109.85 Aligned_cols=162 Identities=15% Similarity=0.078 Sum_probs=121.8
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHH
Q 013549 149 MEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSA 228 (441)
Q Consensus 149 l~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~ 228 (441)
+..++..+...|++++|...+++++++.-.. ..+....|.++..+|++++|+..|++++...+ .+..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~ 75 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR------------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY 75 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS------------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH
Confidence 4566778889999999999888776443111 12233567888899999999999999998655 4444
Q ss_pred HHHHHHHH-HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 229 ALSYGEYL-HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 229 a~~~a~~~-~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
...++.+. ..+++..+|+..|++++++ . |+ ...++.+||.+|..+|+|++|+..|++++
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~---~---------------P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAA---N---------------PD--NFELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH---S---------------TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHh---C---------------CC--CHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33334332 3445666789999999988 1 11 12467899999999999999999999998
Q ss_pred HHHHHhhCCCCchH--HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 308 TKTEELFGSHHPKV--GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 308 ~i~e~~lG~~HP~v--a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
.+ +|.. ...+.+||.+|..+|+.++| ...|+++|.-
T Consensus 136 ~~--------~p~~~~~~a~~~l~~~~~~~g~~~~A------~~~y~~al~~ 173 (176)
T 2r5s_A 136 KV--------NLGAQDGEVKKTFMDILSALGQGNAI------ASKYRRQLYS 173 (176)
T ss_dssp TT--------CTTTTTTHHHHHHHHHHHHHCSSCHH------HHHHHHHHHH
T ss_pred Hh--------CcccChHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHH
Confidence 64 3433 45788999999999999887 8999999864
No 118
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=7.4e-10 Score=115.59 Aligned_cols=237 Identities=11% Similarity=0.015 Sum_probs=152.3
Q ss_pred ChhhHHHHHHHHHH------hhhccccCCCCC-c---hhHHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhhh
Q 013549 78 SDESYSQGMLVLEQ------CLSTQPSDGQLA-E---SWRGISLLAMSTLLYES----GNY----VEAIEKLQKVENFKN 139 (441)
Q Consensus 78 ~~g~y~eAl~~~eq------aL~i~~~~~g~~-h---~~~a~~l~nLa~l~~~q----G~y----~eA~e~~~ral~i~~ 139 (441)
..++|.+|..+|++ ++........++ . ................. ++. .+|+..|++++...+
T Consensus 190 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p 269 (530)
T 2ooe_A 190 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG 269 (530)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC
Confidence 45789999988877 443211111111 1 12233333333222221 233 488899999988876
Q ss_pred hhhhhhHHHHHHHHHHHHh-------cCCcchhHHHHHHHHHHHHhcCC-CcchhhhhhHhHHHHHHHHHHHHcCCHHHH
Q 013549 140 SILGVRVAAMEALAGLYLQ-------LGQDDTSSVVADKCLQLCEKHKP-ENYKTYGAVNSRANAVKGLVELAHGNLESA 211 (441)
Q Consensus 140 ~~lg~~~~al~~La~l~~~-------~G~~~~A~~l~~~~L~i~~~~~~-~~~~~~~~l~~~a~al~gl~~~~qG~y~eA 211 (441)
.. ...+.+++.++.+ +|+++.|..+.+.+..++++... ..+.... .....+.++..+|++++|
T Consensus 270 ~~----~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~-----l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 270 HH----PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML-----LYFAYADYEESRMKYEKV 340 (530)
T ss_dssp TC----HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH-----HHHHHHHHHHHTTCHHHH
T ss_pred CC----HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHHHhcCCHHHH
Confidence 54 2467777777765 79987333333333333333321 1111111 112245566789999999
Q ss_pred HHHHHhhhhccCCch-HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHH-
Q 013549 212 ESFFKGLQEEEGCTG-SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQL- 289 (441)
Q Consensus 212 e~l~~~aL~~~~~~~-~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~l- 289 (441)
..+|++++...+... .+...++.++..+|++++|..+|++|++.- +.. . ..+...+.+
T Consensus 341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--------~~~-------~-----~~~~~~a~~~ 400 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--------RTR-------H-----HVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--------TCC-------T-----HHHHHHHHHH
T ss_pred HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--------CCc-------h-----HHHHHHHHHH
Confidence 999999999655443 467888999999999999999999998751 111 0 112233433
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 290 EAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 290 y~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+..+|++++|..+|+++|.+. |++| ..+.+++.++..+|+.++| ..+|+||+..
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-----p~~~---~~~~~~~~~~~~~g~~~~A------r~~~~~al~~ 454 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-----GDIP---EYVLAYIDYLSHLNEDNNT------RVLFERVLTS 454 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-----TTCH---HHHHHHHHHHTTTTCHHHH------HHHHHHHHHS
T ss_pred HHHcCChhHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHhCCCHhhH------HHHHHHHHhc
Confidence 457999999999999999875 4555 5567888999999999887 8999999876
No 119
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.33 E-value=3.7e-11 Score=102.32 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=88.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
+|.++..+|+|++|+.+|++++...+....+..++|.+|..+|+|++|+..|++||++...... . ..
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~--------~~ 80 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA-----D--------YK 80 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----C--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch-----h--------hH
Confidence 5888899999999999999999977777778889999999999999999999999999432111 0 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT 326 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~ 326 (441)
....++.++|.+|..+|+|++|+++|++||.+. ..|++...+.
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~------~~~~~~~~l~ 123 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF------RDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cCHHHHHHHH
Confidence 123468899999999999999999999999752 2366554444
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.32 E-value=3e-11 Score=102.96 Aligned_cols=107 Identities=10% Similarity=0.061 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|..+..+|+|++|+..|++++...+....+..++|.+|..+|+|++|+..|++||++ .. .
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p-----~---------- 79 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DS-----K---------- 79 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hh-----h----------
Confidence 35888899999999999999999977777888899999999999999999999999998 11 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM 331 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~l 331 (441)
...++.++|.+|..+|+|++|++.|++||++ -|+++.+ ..+|+.+
T Consensus 80 --~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~~a---~~~l~~~ 124 (126)
T 4gco_A 80 --FIKGYIRKAACLVAMREWSKAQRAYEDALQV-----DPSNEEA---REGVRNC 124 (126)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHHHH
T ss_pred --hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CcCCHHH---HHHHHHh
Confidence 1246899999999999999999999999986 4666554 4445443
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=1.1e-10 Score=100.48 Aligned_cols=133 Identities=11% Similarity=-0.013 Sum_probs=108.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|..+..+|+|++|..+|++++...+....+..++|.++..+|+|++|+.+|++++++. ..
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~--------------- 79 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KK--------------- 79 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT---------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc---------------
Confidence 357777899999999999999999666667778889999999999999999999999981 11
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
...++.++|.+|..+|+|++|..+|++++.+ .++++.+. ....++..+..+|++++| ...|.++..
T Consensus 80 --~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~-~~~~~~~~~~~~~~~~~A------~~~~~~~~~ 145 (166)
T 1a17_A 80 --YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAK-MKYQECNKIVKQKAFERA------IAGDEHKRS 145 (166)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHH-HHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHH-HHHHHHHHHHHHHHHHHH------HHcccchHH
Confidence 1245789999999999999999999999976 45666543 334456668889999887 888999988
Q ss_pred HhhcC
Q 013549 357 FLKAP 361 (441)
Q Consensus 357 i~~~~ 361 (441)
+....
T Consensus 146 ~~~~~ 150 (166)
T 1a17_A 146 VVDSL 150 (166)
T ss_dssp HHHHC
T ss_pred Hhccc
Confidence 87543
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.32 E-value=3.7e-12 Score=113.07 Aligned_cols=109 Identities=7% Similarity=0.037 Sum_probs=63.1
Q ss_pred HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcC
Q 013549 215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMG 294 (441)
Q Consensus 215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG 294 (441)
|++++...+....+..++|.++..+|+|++|+.+|++++.+ . +. ...++.+||.+|..+|
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~-----P~------------~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---D-----FY------------NVDYIMGLAAIYQIKE 84 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C-----TT------------CHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C-----CC------------CHHHHHHHHHHHHHHc
Confidence 34444434444455556666666666666666666666665 1 00 0124556666666666
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 295 NFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 295 ~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+|++|++.|++|+.+. |++| ..+.|+|.+|..+|++++| ...|++|+++
T Consensus 85 ~~~~Ai~~~~~al~l~-----P~~~---~~~~~lg~~~~~lg~~~eA------~~~~~~al~l 133 (151)
T 3gyz_A 85 QFQQAADLYAVAFALG-----KNDY---TPVFHTGQCQLRLKAPLKA------KECFELVIQH 133 (151)
T ss_dssp CHHHHHHHHHHHHHHS-----SSCC---HHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-----CCCc---HHHHHHHHHHHHcCCHHHH------HHHHHHHHHh
Confidence 6666666666666552 3443 3456666666666666665 6666666665
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.30 E-value=4.6e-12 Score=125.95 Aligned_cols=160 Identities=12% Similarity=0.070 Sum_probs=122.5
Q ss_pred HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc-ccchhHHHHHH
Q 013549 204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC-NMALEEVALAA 282 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~-~~~~~~~~~~a 282 (441)
..++|++|+..|++++...+....+..++|.++..+|+|++|+..|++|+++. .. ...+... ..........+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~---~~~~~~~~~~~~~~~~~~~ 198 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EY---ESSFSNEEAQKAQALRLAS 198 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TT---CCCCCSHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hc---cccCChHHHHHHHHHHHHH
Confidence 35677888888888877555556677888999999999999999999999983 11 0000000 00001112456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 362 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~ 362 (441)
++|||.+|..+|+|++|+.+|++||.+ .|....++.++|.+|..+|++++| ...|++|+++.
T Consensus 199 ~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~---- 260 (336)
T 1p5q_A 199 HLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELA------RADFQKVLQLY---- 260 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHC----
Confidence 889999999999999999999999997 466678899999999999999987 89999999883
Q ss_pred CCCcchHhhhccHHHHHHHhccHHHHHH
Q 013549 363 LESEGVETKVDRTDIVALARGGYAEALS 390 (441)
Q Consensus 363 ~~~~~~~~~l~nl~~~~~~~g~yaeal~ 390 (441)
|+......+++.++..+|++.++..
T Consensus 261 ---P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 261 ---PNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333466789999999999988844
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.30 E-value=6.3e-11 Score=117.72 Aligned_cols=129 Identities=18% Similarity=0.142 Sum_probs=108.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCc---------------hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCT---------------GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~---------------~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
..|.++..+|+|++|+..|++++...+.. ..+..++|.+|..+|+|++|+..|++||++ ...
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~ 228 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL---DSN 228 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 45778889999999999999999944433 356788999999999999999999999998 111
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
...+++++|.+|..+|+|++|+..|++|+.+ .|....++.+|+.+|..+|++++|
T Consensus 229 -----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 229 -----------------NEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1346899999999999999999999999987 455567899999999999999987
Q ss_pred hhhHHHHHHHHHHHHHh
Q 013549 342 SALLIQEGLYRRALEFL 358 (441)
Q Consensus 342 ~~~~~Ae~ly~rAL~i~ 358 (441)
...+|++.+..+
T Consensus 284 -----~~~~~~~~~~~~ 295 (336)
T 1p5q_A 284 -----EKKLYANMFERL 295 (336)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHh
Confidence 256788887765
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.29 E-value=3.1e-11 Score=102.86 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013549 226 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 305 (441)
Q Consensus 226 ~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~r 305 (441)
..+..+.|..|..+|+|++|+..|++||++ .. . ...++.++|.+|..+|+|++|+..|++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p-----~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DP-----E------------NAILYSNRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-----C------------CHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence 345567899999999999999999999998 11 1 124678999999999999999999999
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcch
Q 013549 306 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGV 368 (441)
Q Consensus 306 AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~ 368 (441)
|+.+ .|....++.++|.+|..+|++++| ...|+++|++ .|+++..
T Consensus 73 al~~--------~p~~~~a~~~lg~~~~~~~~~~~A------~~~~~~al~l----~P~~~~a 117 (126)
T 4gco_A 73 CIRL--------DSKFIKGYIRKAACLVAMREWSKA------QRAYEDALQV----DPSNEEA 117 (126)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH----CTTCHHH
T ss_pred HHHh--------hhhhhHHHHHHHHHHHHCCCHHHH------HHHHHHHHHH----CcCCHHH
Confidence 9986 455567899999999999999987 8999999988 3455543
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.28 E-value=8e-11 Score=108.81 Aligned_cols=177 Identities=15% Similarity=0.089 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHH
Q 013549 125 VEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELA 204 (441)
Q Consensus 125 ~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~ 204 (441)
.+|+..|+++.+... ..++.+|+.+|...+++++|..+++++.+. .. ..+...+|.+|..
T Consensus 3 ~eA~~~~~~aa~~g~------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g~-----------~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGD------RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---GD-----------GDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TC-----------HHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHCCC------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CC-----------HHHHHHHHHHHHc
Confidence 357788888765421 247889999999999999999999998632 11 1223345777665
Q ss_pred cC----CHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 205 HG----NLESAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 205 qG----~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
| ++++|..+|+++.+.. ++.+..++|.+|.. .+++++|+.+|++|++. + ++
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~---~~---------- 121 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----S---ES---------- 121 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----T---TS----------
T ss_pred -CCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----C---CC----------
Confidence 6 8999999999997742 45678889999887 88999999999999875 1 00
Q ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh-h-----chhhhhhhHH
Q 013549 277 EVALAATFALGQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK-A-----MQEHSSALLI 346 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~----qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q-G-----~~eeA~~~~~ 346 (441)
.....++++||.+|.. .+++++|..+|++|+++ +.+|. ++.+||.+|... | ++++|
T Consensus 122 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~---a~~~Lg~~y~~g~gg~~~~d~~~A----- 187 (212)
T 3rjv_A 122 DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRTGY---AEYWAGMMFQQGEKGFIEPNKQKA----- 187 (212)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCTTH---HHHHHHHHHHHCBTTTBCCCHHHH-----
T ss_pred cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCCHH---HHHHHHHHHHcCCCCCCCCCHHHH-----
Confidence 0013578999999999 99999999999999864 23443 689999999765 3 66665
Q ss_pred HHHHHHHHHHH
Q 013549 347 QEGLYRRALEF 357 (441)
Q Consensus 347 Ae~ly~rAL~i 357 (441)
..+|++|++.
T Consensus 188 -~~~~~~A~~~ 197 (212)
T 3rjv_A 188 -LHWLNVSCLE 197 (212)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHc
Confidence 8899999876
No 127
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.28 E-value=6.7e-10 Score=127.48 Aligned_cols=252 Identities=14% Similarity=0.072 Sum_probs=160.7
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHH------------------------HHHHHHHHcCChHHHHHHHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLL------------------------AMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~------------------------nLa~l~~~qG~y~eA~e~~~ra 134 (441)
.|.+.+|+.+||+++ ...+.+ .+|+.....+. .+|.++...|.|+||..+|+++
T Consensus 998 aglp~EaieLLEKiv-l~~s~f-s~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 998 ADLPNELIELLEKIV-LDNSVF-SEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred CCCHHHHHHHHHHHH-cCCCcc-cccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 578999999999999 333322 35766655532 1367777788888888888775
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHH
Q 013549 135 ENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESF 214 (441)
Q Consensus 135 l~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l 214 (441)
. . ...++..++...+++++|..+++++ .. .......|.++..+|+|++|+..
T Consensus 1076 ~--------~---~~~A~~VLie~i~nldrAiE~Aerv-------n~----------p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1076 D--------V---NTSAVQVLIEHIGNLDRAYEFAERC-------NE----------PAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred C--------C---HHHHHHHHHHHHhhHHHHHHHHHhc-------CC----------HHHHHHHHHHHHhCCCHHHHHHH
Confidence 2 1 0111222333556665555555544 20 11122457788899999999999
Q ss_pred HHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccc-----cccc-h----hHHHHHHHH
Q 013549 215 FKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS-----CNMA-L----EEVALAATF 284 (441)
Q Consensus 215 ~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~-----~~~~-~----~~~~~~al~ 284 (441)
|.++ ..+......+..+...|+|++|.++|+.|+....+.. -...+|- ..+. . .......+.
T Consensus 1128 YiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~---Idt~LafaYAKl~rleele~fI~~~n~ad~~ 1199 (1630)
T 1xi4_A 1128 YIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY---VETELIFALAKTNRLAELEEFINGPNNAHIQ 1199 (1630)
T ss_pred HHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc---ccHHHHHHHHhhcCHHHHHHHHhCCCHHHHH
Confidence 9887 2334556678889999999999999999886621000 0000110 0000 0 001123466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh--hc--
Q 013549 285 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL--KA-- 360 (441)
Q Consensus 285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~--~~-- 360 (441)
++|..+..+|+|++|..+|.+| ..+..||.+|..+|++++| ...|++|.... +.
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~A------IEaarKA~n~~aWkev~ 1257 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAA------VDGARKANSTRTWKEVC 1257 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHH------HHHHHHhCCHHHHHHHH
Confidence 8999999999999999999995 4888899999999998887 66666664331 10
Q ss_pred --------------CC---CCCcchHhhhccHHHHHHHhccHHHHHHHhh
Q 013549 361 --------------PP---LESEGVETKVDRTDIVALARGGYAEALSVQQ 393 (441)
Q Consensus 361 --------------~~---~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~ 393 (441)
.+ ..||+ .+..+...|..+|.|+||+...+
T Consensus 1258 ~acve~~Ef~LA~~cgl~Iiv~~d---eLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIVVHAD---ELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhhcCHH---HHHHHHHHHHHcCCHHHHHHHHH
Confidence 01 12343 33455667888888888888763
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.28 E-value=8.9e-11 Score=104.08 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|.++..+|+|++|+.+|++++...+..+.+..++|.+|..+|+|++|+..|++|+++ . +..
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---~-----P~~--------- 103 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---G-----KND--------- 103 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---S-----SSC---------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---C-----CCC---------
Confidence 45788889999999999999999988888888999999999999999999999999999 1 111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
..++.++|.+|..+|+|++|+..|++|+.+.
T Consensus 104 ---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 ---YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1357899999999999999999999999874
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=1.8e-10 Score=94.27 Aligned_cols=131 Identities=21% Similarity=0.293 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG 188 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~ 188 (441)
.++.++|.++...|++++|+..+++++...+.. ...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~--------------------------------------- 38 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAW--------------------------------------- 38 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHH---------------------------------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHH---------------------------------------
Confidence 457788888888899988888888875443211 0011
Q ss_pred hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCc
Q 013549 189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 268 (441)
Q Consensus 189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~l 268 (441)
...+.++..+|++++|..+|++++...+....+...++.++..+|++++|+.++++++.+. ..
T Consensus 39 -------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~------- 101 (136)
T 2fo7_A 39 -------YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PR------- 101 (136)
T ss_dssp -------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TT-------
T ss_pred -------HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CC-------
Confidence 1234555678888888888888888555556667778888899999999999999988871 11
Q ss_pred cccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 269 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 269 g~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
...++.++|.+|..+|++++|..+|++++.+
T Consensus 102 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 102 ----------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ----------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ----------ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 0134678999999999999999999998875
No 130
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.27 E-value=6.5e-12 Score=131.22 Aligned_cols=135 Identities=11% Similarity=0.001 Sum_probs=104.8
Q ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHH
Q 013549 199 GLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEV 278 (441)
Q Consensus 199 gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~ 278 (441)
|..+..+|+|++|+.+|++++...+....+..++|.+|..+|+|++|+..|++|+++ ...
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~----------------- 72 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKK----------------- 72 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTT-----------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC-----------------
Confidence 444568999999999999999977777788889999999999999999999999988 111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH--HHHhhchhhhhhhHHHHHHHH----
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALM--FRNKAMQEHSSALLIQEGLYR---- 352 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~l--y~~qG~~eeA~~~~~Ae~ly~---- 352 (441)
...+++++|.+|..+|+|++|++.|++|+++ +|.....+.+++.+ |..+|++++| +.+|+
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A------~~~~~~~~~ 138 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERA------IAGDEHKRS 138 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------------CCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH------hccccccch
Confidence 1346889999999999999999999999987 34444567778888 8899999987 78888
Q ss_pred -------HHHHHhhc-CCCCCcc
Q 013549 353 -------RALEFLKA-PPLESEG 367 (441)
Q Consensus 353 -------rAL~i~~~-~~~~~~~ 367 (441)
+++++... .++.++.
T Consensus 139 ~~~~~~~~al~~~~~~~~~~~~~ 161 (477)
T 1wao_1 139 VVDSLDIESMTIEDEYSGPKLED 161 (477)
T ss_dssp TTTCCTTSSCCCCTTCCSCCCGG
T ss_pred hHhhhhhhhcccccccccccccc
Confidence 66666532 3344554
No 131
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.27 E-value=1.1e-10 Score=105.01 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
..+.+.|..+...|+|++|+..|++||++- .. .++. -+.+..| ....+++|+|.++..+|+|++|+..|.+|
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~---p~--~~~~-~a~~~~~--~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS---HT--MPPE-EAFDHAG--FDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---TT--SCTT-SCCCHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC--Ccch-hhhhhcc--chHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345778999999999999999999999993 11 0000 0111111 12347899999999999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHH----HHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 307 LTKTEELFGSHHPKVGVVL----TCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l----~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
|+++.+. |+-+|+-+..+ +|+|.++..+|++++| ...|++||++-
T Consensus 84 L~l~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEA------l~~y~kAlel~ 132 (159)
T 2hr2_A 84 LHYFNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEA------MPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHhhhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHH------HHHHHHHHhcC
Confidence 9997765 47788888888 9999999999999997 89999999996
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.27 E-value=2.3e-10 Score=98.53 Aligned_cols=140 Identities=13% Similarity=-0.000 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcc
Q 013549 105 SWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENY 184 (441)
Q Consensus 105 ~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~ 184 (441)
...+..+.++|..+..+|+|++|+..|++++.+.+... ..+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~----------------------------------- 50 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYY----------------------------------- 50 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHH-----------------------------------
Confidence 45778899999999999999999999998866543210 001
Q ss_pred hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCC
Q 013549 185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSD 264 (441)
Q Consensus 185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~ 264 (441)
...|.++..+|+|++|+.+|++++...+....+...+|.++..+|+|++|..+|++++++. ..
T Consensus 51 -----------~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---p~--- 113 (166)
T 1a17_A 51 -----------GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK---PH--- 113 (166)
T ss_dssp -----------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT---
T ss_pred -----------HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC---
Confidence 1245666789999999999999998666667778888999999999999999999999881 11
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 265 MNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
...+.....++..+..+|+|++|.+++.++..++..
T Consensus 114 ------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 114 ------------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 112223356666788999999999999999988865
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.25 E-value=2.2e-11 Score=106.59 Aligned_cols=113 Identities=14% Similarity=0.015 Sum_probs=87.0
Q ss_pred HHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 013549 212 ESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 291 (441)
Q Consensus 212 e~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~ 291 (441)
...|++++...+....+...+|.++..+|+|++|+.+|++++.+ .. . ...++.+||.+|.
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p-----~------------~~~~~~~lg~~~~ 66 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DH-----Y------------DSRFFLGLGACRQ 66 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T------------CHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---Cc-----c------------cHHHHHHHHHHHH
Confidence 34566777755555566777888888999999999999998887 11 1 1235678999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 292 HMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 292 ~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
.+|+|++|++.|++|+.+ .|++| ..+.++|.+|..+|++++| +..|++++++.
T Consensus 67 ~~g~~~~A~~~~~~al~l-----~p~~~---~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~ 119 (148)
T 2vgx_A 67 AMGQYDLAIHSYSYGAVM-----DIXEP---RFPFHAAECLLQXGELAEA------ESGLFLAQELI 119 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH-----STTCT---HHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhc-----CCCCc---hHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 999999999999999876 35555 4578889999999998887 88899988875
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.25 E-value=6.9e-11 Score=104.54 Aligned_cols=122 Identities=11% Similarity=0.102 Sum_probs=100.5
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAA 282 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~a 282 (441)
..+|+|++|+..|++++...+....+...+|.+|..+|+|++|+.+|++++.+. .. ....
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~-----------------~~~~ 80 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GE-----------------NAEL 80 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CS-----------------CHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-----------------CHHH
Confidence 368999999999999999777777788889999999999999999999999982 11 1235
Q ss_pred HHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 283 TFALGQL-EAHMGNF--GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 283 l~nLg~l-y~~qG~y--~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+.++|.+ |..+|+| ++|+.+|++++.+ +|.-...+.++|.+|..+|++++| ...|++++++.
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A------~~~~~~al~~~ 145 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQA------IELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHH------HHHHHHHHhhC
Confidence 7899999 8899999 9999999999986 345556789999999999999987 89999998773
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.22 E-value=3.6e-10 Score=92.48 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=96.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|..+..+|+|++|..+|++++...+....+...+|.++..+|+|++|+.+|++++.+ ...
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~--------------- 78 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPA--------------- 78 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---Ccc---------------
Confidence 45777789999999999999999966666677788999999999999999999999987 111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhch
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ 338 (441)
...++.++|.+|..+|+|++|..+|++++.+ .|.....+.++|.+|..+|++
T Consensus 79 --~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 --YSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred --CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 1235789999999999999999999999987 344456788999999999876
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.22 E-value=2.6e-10 Score=94.20 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccch
Q 013549 196 AVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMAL 275 (441)
Q Consensus 196 al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~ 275 (441)
...|..+..+|+|++|+.+|++++...+....+...+|.++..+|+|++|+.+|++++++. ..
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~-------------- 82 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PT-------------- 82 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TT--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC--------------
Confidence 3457778899999999999999999666667788889999999999999999999999871 11
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549 276 EEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337 (441)
Q Consensus 276 ~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~ 337 (441)
...++.++|.+|..+|+|++|+.+|++++.+ +|.....+.+++.+|..+|+
T Consensus 83 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 ---FIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 1245789999999999999999999999987 46666788899999988774
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.19 E-value=4.6e-11 Score=108.17 Aligned_cols=161 Identities=8% Similarity=-0.024 Sum_probs=108.6
Q ss_pred HHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccc-cccchhHHHH
Q 013549 202 ELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGS-CNMALEEVAL 280 (441)
Q Consensus 202 ~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~-~~~~~~~~~~ 280 (441)
....|+|++|...++................|..+..+|+|++|+.+|++++.+. .. ++..... ..........
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~--~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF---IH--TEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---TT--CTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hc--ccccchhhHHHHHHHHHH
Confidence 3468888888888877665433344556778999999999999999999999973 11 1100000 0000001123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 281 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 281 ~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
.++.++|.+|..+|+|++|+.+|++++.+ +|....++.++|.+|..+|++++| ...|++++++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~-- 152 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEA------KENLYKAASLN-- 152 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHH------HHHHHHHHHHC--
Confidence 46789999999999999999999999997 466677899999999999999987 89999999883
Q ss_pred CCCCCcchHhhhccHHHHHHHhccHHHH
Q 013549 361 PPLESEGVETKVDRTDIVALARGGYAEA 388 (441)
Q Consensus 361 ~~~~~~~~~~~l~nl~~~~~~~g~yaea 388 (441)
|+++ ....+++.++...+++.++
T Consensus 153 --p~~~---~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 153 --PNNL---DIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp --TTCH---HHHHHHHHHHHHHHHHHC-
T ss_pred --CCcH---HHHHHHHHHHHHHHHHHHH
Confidence 3333 3455666666665555433
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=9.9e-10 Score=91.63 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|..+..+|+|++|+.+|++++...+....+..++|.++..+|+|++|+..|++++++ ...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~--------------- 70 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPN--------------- 70 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC---------------
Confidence 35777889999999999999999977767778889999999999999999999999998 111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF 332 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly 332 (441)
...++.++|.+|..+|+|++|+..|++++.+..... +.|.-......|+.+.
T Consensus 71 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 71 --FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKAS 122 (126)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHH
Confidence 124678999999999999999999999999985552 2344444555555554
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=2.7e-10 Score=102.97 Aligned_cols=130 Identities=10% Similarity=0.048 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKT 186 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~ 186 (441)
-+..+.++|..+..+|+|++|++.|++++.. ...++.+++.+|..+|++++|..++++++.+. +..
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~--- 70 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP-------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD----KHL--- 70 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC---
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccc---
Confidence 3556889999999999999999999998422 23478899999999999999999999998653 111
Q ss_pred hhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----------------chHHHHHHHHHHHHccChHHHHHHHH
Q 013549 187 YGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC----------------TGSAALSYGEYLHATRNFLLAKKFYQ 250 (441)
Q Consensus 187 ~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~----------------~~~~a~~~a~~~~~qG~y~eA~~ly~ 250 (441)
..+....|.++..+|+|++|+..|++++...+. ...+..++|.++..+|++++|...|+
T Consensus 71 -----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 71 -----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 122234688889999999999999999983222 23667889999999999999999999
Q ss_pred HHHHH
Q 013549 251 KVIEV 255 (441)
Q Consensus 251 rAL~i 255 (441)
+++++
T Consensus 146 ~al~~ 150 (213)
T 1hh8_A 146 LATSM 150 (213)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 99987
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.16 E-value=5.8e-10 Score=100.83 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=96.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCch----------------HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTG----------------SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~----------------~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
.|..+..+|+|++|+.+|++++...+..+ .+..++|.++..+|+|++|+..|++++.+ ...
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~ 120 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI---DKN 120 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---Ccc
Confidence 57778899999999999999998333222 56678899999999999999999999998 111
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
...++.++|.+|..+|+|++|+..|++++.+ +|.....+.+++.++..+++++++
T Consensus 121 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 121 -----------------NVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp -----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred -----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1246889999999999999999999999987 455567788999999999998876
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.16 E-value=1.1e-09 Score=88.67 Aligned_cols=112 Identities=18% Similarity=0.257 Sum_probs=92.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..+..+...|+|++|+.+|++++...+....+...++.++..+|+|++|+.+|++++.+ ...
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~--------------- 75 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPN--------------- 75 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCc---------------
Confidence 35677789999999999999999966656677788999999999999999999999987 111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 336 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG 336 (441)
...++.++|.+|..+|++++|..+|++++.+ +|.....+.++|.++..+|
T Consensus 76 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 --NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred --cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 1235789999999999999999999999986 3455567788888887765
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.15 E-value=1.1e-09 Score=95.68 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|.++..+|+|++|+.+|++++...+....+..++|.++..+|+|++|+..|++|+.+ ... .
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~-----~--------- 88 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIX-----E--------- 88 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STT-----C---------
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCC-----C---------
Confidence 35777889999999999999999977777788889999999999999999999999998 111 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 322 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va 322 (441)
..++.++|.+|..+|++++|++.|++++.+. +++|...
T Consensus 89 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~ 126 (148)
T 2vgx_A 89 ---PRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFX 126 (148)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGH
T ss_pred ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcch
Confidence 1357899999999999999999999999876 3566653
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.15 E-value=5.5e-11 Score=123.24 Aligned_cols=161 Identities=15% Similarity=0.047 Sum_probs=120.7
Q ss_pred HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccc-cchhHHHHHH
Q 013549 204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCN-MALEEVALAA 282 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~-~~~~~~~~~a 282 (441)
..++|++|+..|++++...+....+..++|.++..+|+|++|+..|++||++.. . .+.+.... .........+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p---~---~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE---M---EYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT---T---CCSCCHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---c---cccCChHHHHHHHHHHHHH
Confidence 456778888888888775544556677889999999999999999999999832 1 11011000 0001112456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 362 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~ 362 (441)
++|+|.+|..+|+|++|+..|++||.+ +|....++.++|.+|..+|+|++| ...|++|+++.
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A------~~~~~~al~l~---- 381 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESA------KGDFEKVLEVN---- 381 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTTC----
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC----
Confidence 889999999999999999999999997 355677899999999999999987 89999998762
Q ss_pred CCCcchHhhhccHHHHHHHhccHHHHHHH
Q 013549 363 LESEGVETKVDRTDIVALARGGYAEALSV 391 (441)
Q Consensus 363 ~~~~~~~~~l~nl~~~~~~~g~yaeal~~ 391 (441)
|+++ ....+++.++...|+|.++...
T Consensus 382 P~~~---~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 382 PQNK---AARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 4667888999999998877653
No 144
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.14 E-value=3.8e-09 Score=121.30 Aligned_cols=216 Identities=15% Similarity=0.111 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG 188 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~ 188 (441)
.++.++|..+..+|+|.||++.|.++ .....+..++..+.++|+++++..+++.+.+...... .
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-I------ 1169 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-V------ 1169 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-c------
Confidence 34455555555555555555555553 1112334455555555555555555554433220000 0
Q ss_pred hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCc
Q 013549 189 AVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTL 268 (441)
Q Consensus 189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~l 268 (441)
..-.+..|..++++++.+.+. . ........++|..+...|+|++|..+|.+|-
T Consensus 1170 ------dt~LafaYAKl~rleele~fI----~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~--------------- 1222 (1630)
T 1xi4_A 1170 ------ETELIFALAKTNRLAELEEFI----N--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------------- 1222 (1630)
T ss_pred ------cHHHHHHHHhhcCHHHHHHHH----h--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------------
Confidence 001233344445555433221 1 1112234567888888899999999988851
Q ss_pred cccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------------HhhCC---CCchHHHHHHHH
Q 013549 269 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTE-----------------ELFGS---HHPKVGVVLTCL 328 (441)
Q Consensus 269 g~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e-----------------~~lG~---~HP~va~~l~nL 328 (441)
.+..||.+|..+|+|++|.+.+++|....- ...|- .||+ .+..+
T Consensus 1223 -------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~d---eLeel 1286 (1630)
T 1xi4_A 1223 -------------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD---ELEEL 1286 (1630)
T ss_pred -------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHH---HHHHH
Confidence 146889999999999999999999966532 01232 2333 45577
Q ss_pred HHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHH--HhccHHHHHHHhhchh
Q 013549 329 ALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVAL--ARGGYAEALSVQQNRK 396 (441)
Q Consensus 329 a~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~--~~g~yaeal~~~~~r~ 396 (441)
+..|..+|.|++| ..+++++|.+- +.|....+-+ ++++. .-++.-|.+..+..|.
T Consensus 1287 i~yYe~~G~feEA------I~LlE~aL~Le----raH~gmftEL---aiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1287 INYYQDRGYFEEL------ITMLEAALGLE----RAHMGMFTEL---AILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHcCCHHHH------HHHHHHHhccC----hhHhHHHHHH---HHHHHhCCHHHHHHHHHHHHHhc
Confidence 8899999999887 78888887552 2344433333 33332 3345555555554443
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.14 E-value=1.1e-09 Score=94.11 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=87.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|..+..+|+|++|+.+|++++...+....+...+|.++..+|+|++|+..|++|+.+ .. ..
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p-----~~--------- 85 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DI-----NE--------- 85 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----TC---------
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CC-----CC---------
Confidence 35777789999999999999999977777788889999999999999999999999998 11 11
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVV 324 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~ 324 (441)
..++.++|.+|..+|+|++|+..|++++.+.- ++|.....
T Consensus 86 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 125 (142)
T 2xcb_A 86 ---PRFPFHAAECHLQLGDLDGAESGFYSARALAA-----AQPAHEAL 125 (142)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----TCGGGHHH
T ss_pred ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCcchHHH
Confidence 13578999999999999999999999998864 66665433
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.14 E-value=1.6e-09 Score=94.97 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=86.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|.++..+|+|++|+.+|++++...+....+..++|.+|..+|+|++|+..|++++++ ...
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~--------------- 77 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPK--------------- 77 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC---------------
Confidence 45778889999999999999999977777788889999999999999999999999998 111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCch
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPK 320 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~ 320 (441)
...++.++|.+|..+|+|++|+..|++++.+. ++++.
T Consensus 78 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~ 114 (164)
T 3sz7_A 78 --YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE-----GNGGS 114 (164)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----SSSCC
T ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCchH
Confidence 12467899999999999999999999999876 66665
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.14 E-value=3.1e-10 Score=97.53 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=90.7
Q ss_pred HHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 013549 213 SFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAH 292 (441)
Q Consensus 213 ~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~ 292 (441)
..|++++...+........+|..+..+|+|++|+.+|++++.+ .. . ...++.+||.+|..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p-----~------------~~~~~~~lg~~~~~ 64 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DH-----Y------------DARYFLGLGACRQS 64 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT-----T------------CHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CC-----c------------cHHHHHHHHHHHHH
Confidence 4567777755555667788899999999999999999999987 11 1 12457899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 293 MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 293 qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+|+|++|+..|++|+.+ .|++|. .+.++|.+|..+|++++| ...|++++++.
T Consensus 65 ~g~~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~~g~~~~A------~~~~~~al~~~ 116 (142)
T 2xcb_A 65 LGLYEQALQSYSYGALM-----DINEPR---FPFHAAECHLQLGDLDGA------ESGFYSARALA 116 (142)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCTH---HHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhc-----CCCCcH---HHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 99999999999999986 466665 578999999999999987 89999999986
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.13 E-value=3.8e-10 Score=109.03 Aligned_cols=180 Identities=9% Similarity=0.035 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
..+..+.++|..+. ..|+|++|+.+|++++.+. |.....+.++|.+|..+|+|++|+..|++++.+.+
T Consensus 2 ~~a~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 69 (281)
T 2c2l_A 2 PSAQELKEQGNRLF----VGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69 (281)
T ss_dssp CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT
T ss_pred hhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34567788888873 3689999999999999853 44567899999999999999999999999988865
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHH-----------------HHHHHH
Q 013549 140 SILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANA-----------------VKGLVE 202 (441)
Q Consensus 140 ~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~a-----------------l~gl~~ 202 (441)
.. ..++.+++.+|..+|++++|..++++++++.......-............. ..-+..
T Consensus 70 ~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 145 (281)
T 2c2l_A 70 QS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR 145 (281)
T ss_dssp TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 43 347889999999999999999999999987654321100000000000000 011222
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH-ccChHHHHHHHHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA-TRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~-qG~y~eA~~ly~rAL~i 255 (441)
+.+|++++|...|++++...+........++.++.. ++++++|..+|+++.+.
T Consensus 146 l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 146 LIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 357999999999999998655444444555555555 48899999999998764
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.13 E-value=6.6e-10 Score=92.72 Aligned_cols=98 Identities=13% Similarity=-0.005 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
......|..+..+|+|++|+.+|++++++ ... ...++.++|.+|..+|+|++|+..|+++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APE-----------------DARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC-----------------ChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34567788999999999999999999998 111 1246789999999999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+.+ .|.....+.++|.+|..+|++++| ...|++++++.
T Consensus 65 l~~--------~p~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~~ 102 (126)
T 3upv_A 65 IEK--------DPNFVRAYIRKATAQIAVKEYASA------LETLDAARTKD 102 (126)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHh--------CCCcHHHHHHHHHHHHHHhCHHHH------HHHHHHHHHhC
Confidence 987 355567899999999999999987 89999999986
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.11 E-value=1.1e-09 Score=90.47 Aligned_cols=118 Identities=13% Similarity=0.051 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549 225 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 225 ~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~ 304 (441)
...+...+|.++..+|+|++|+.+|++++++ ... ...++.++|.+|..+|+|++|+++|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~ 74 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPK-----------------DAKLYSNRAACYTKLLEFQLALKDCE 74 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTT-----------------CHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC-----------------cHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3456678899999999999999999999976 111 12457899999999999999999999
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhc
Q 013549 305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARG 383 (441)
Q Consensus 305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g 383 (441)
+++.+ .|.....+.++|.+|..+|++++| ...|++++++. |.......+++.++..+|
T Consensus 75 ~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 75 ECIQL--------EPTFIKGYTRKAAALEAMKDYTKA------MDVYQKALDLD-------SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-------GGGTHHHHHHHHHHHHHT
T ss_pred HHHHh--------CCCchHHHHHHHHHHHHHhhHHHH------HHHHHHHHHhC-------CCchHHHHHHHHHHHHhc
Confidence 99986 344556889999999999999987 89999998873 222234455666665554
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.10 E-value=8.2e-10 Score=96.77 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013549 226 GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR 305 (441)
Q Consensus 226 ~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~r 305 (441)
......+|.++..+|+|++|+.+|++++++. .. ...+++++|.+|..+|+|++|+..|++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 70 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PA-----------------NPIYLSNRAAAYSASGQHEKAAEDAEL 70 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---Cc-----------------CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3456778999999999999999999999981 11 124678999999999999999999999
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 306 TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 306 AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
++.+ +|.....+.++|.+|..+|++++| ...|++++++.
T Consensus 71 al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~ 109 (164)
T 3sz7_A 71 ATVV--------DPKYSKAWSRLGLARFDMADYKGA------KEAYEKGIEAE 109 (164)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC
Confidence 9998 355577899999999999999987 89999999985
No 152
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.10 E-value=1.3e-09 Score=95.37 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=93.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhc------------------cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhh
Q 013549 198 KGLVELAHGNLESAESFFKGLQEE------------------EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQ 259 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~------------------~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~ 259 (441)
.|..+..+|+|++|+..|++++.. .+....+..++|.+|..+|+|++|+..+++||++ .
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~ 93 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR---E 93 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---S
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---C
Confidence 577788999999999999999983 3333456678899999999999999999999998 1
Q ss_pred cccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH-HHHHHHHHHHHHhhch
Q 013549 260 KDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQ 338 (441)
Q Consensus 260 ~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va-~~l~nLa~ly~~qG~~ 338 (441)
. . ...++.++|.+|..+|+|++|...|++|+.+ .|.-. .....|+.+.....++
T Consensus 94 p-----~------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 94 E-----T------------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp T-----T------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred C-----c------------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHH
Confidence 1 1 1346899999999999999999999999998 35444 5566677777776666
Q ss_pred hhh
Q 013549 339 EHS 341 (441)
Q Consensus 339 eeA 341 (441)
.+.
T Consensus 149 ~~~ 151 (162)
T 3rkv_A 149 KAD 151 (162)
T ss_dssp TTS
T ss_pred HHH
Confidence 553
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=2.5e-09 Score=103.24 Aligned_cols=198 Identities=14% Similarity=0.047 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcch
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~ 185 (441)
..+..+.++|..+..+|+|++|+..|++++.+.+.. ...+.+++.+|..+|++++|...+++++.+ .+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~--- 70 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALEL----DGQ--- 70 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTT---
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCC---
Confidence 346789999999999999999999999998876543 235677777777788877777777766532 111
Q ss_pred hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCC
Q 013549 186 TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDM 265 (441)
Q Consensus 186 ~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~ 265 (441)
. ..+....|.++..+|+|++|+..|++++...+........... ...+..++..+.+... ...
T Consensus 71 ~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~---- 133 (281)
T 2c2l_A 71 S-----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP---SALRIAKKKRWNSIEE-----RRI---- 133 (281)
T ss_dssp C-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH---HHHHHHHHHHHHHHHH-----TCC----
T ss_pred C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH---HHHHHHHHHHHHHHHH-----HHH----
Confidence 1 1122345667777788888888887777722211100000100 1112222222222110 111
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHh-hchhhhhhh
Q 013549 266 NTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNK-AMQEHSSAL 344 (441)
Q Consensus 266 ~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~q-G~~eeA~~~ 344 (441)
. .+..+ ...|+.++ +|++++|.+.|++|+.. .|.-......++.++... +++++|
T Consensus 134 ---~------~~~~i--~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a--- 189 (281)
T 2c2l_A 134 ---H------QESEL--HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADM--- 189 (281)
T ss_dssp ---C------CCCHH--HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHH---
T ss_pred ---h------hhHHH--HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHH---
Confidence 0 00011 23445554 68888888888887763 344445555556666665 666665
Q ss_pred HHHHHHHHHHHHHh
Q 013549 345 LIQEGLYRRALEFL 358 (441)
Q Consensus 345 ~~Ae~ly~rAL~i~ 358 (441)
+.+|+++.+..
T Consensus 190 ---~~~f~~a~~~~ 200 (281)
T 2c2l_A 190 ---DELFSQVDEKR 200 (281)
T ss_dssp ---HHHHHHSSCTT
T ss_pred ---HHHHHhhhccc
Confidence 88888887643
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.09 E-value=9.1e-10 Score=114.07 Aligned_cols=129 Identities=13% Similarity=0.153 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCc---------------hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCT---------------GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~---------------~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
..|..+..+|+|++|+..|++++...+.. ..+..++|.+|..+|+|++|+..|++||++ ...
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~ 349 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL---DSA 349 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCc
Confidence 35778889999999999999999943333 356678999999999999999999999998 111
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
...+++++|.+|..+|+|++|+..|++||.+ .|.-..++.+|+.+|..+|++++|
T Consensus 350 -----------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 350 -----------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1356899999999999999999999999986 466667899999999999999887
Q ss_pred hhhHHHHHHHHHHHHHh
Q 013549 342 SALLIQEGLYRRALEFL 358 (441)
Q Consensus 342 ~~~~~Ae~ly~rAL~i~ 358 (441)
...+|++.+.-.
T Consensus 405 -----~~~~~~~~f~k~ 416 (457)
T 1kt0_A 405 -----DRRIYANMFKKF 416 (457)
T ss_dssp -----HHHHHHHC----
T ss_pred -----HHHHHHHHHhhh
Confidence 245666655443
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.09 E-value=5.6e-09 Score=87.44 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=90.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|..+..+|+|++|+.+|++++...+....+..++|.++..+|+|++|+..|++++.+ ...
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~--------------- 75 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQ--------------- 75 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT---------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---Cch---------------
Confidence 45777889999999999999999976667778889999999999999999999999998 111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHH
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLT 326 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~ 326 (441)
...++.++|.+|..+|+|++|+..|++++.+.........+.+...+.
T Consensus 76 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~ 123 (137)
T 3q49_B 76 --SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123 (137)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence 124678999999999999999999999999987744333454444333
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.08 E-value=4e-09 Score=87.41 Aligned_cols=113 Identities=21% Similarity=0.218 Sum_probs=91.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCch---HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTG---SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~---~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~ 274 (441)
.|..+..+|+|++|..+|++++...+... .+...+|.++..+|+|++|+..|++++.+. .. .+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~---~~~------- 74 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PT---HDK------- 74 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT---STT-------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CC---Ccc-------
Confidence 46777899999999999999999544444 577888999999999999999999999871 11 100
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549 275 LEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF 332 (441)
Q Consensus 275 ~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly 332 (441)
...++.++|.+|..+|++++|...|++++..+ |++|.+......|..+-
T Consensus 75 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 75 ----AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQSIR 123 (129)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHC
T ss_pred ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHH
Confidence 13467899999999999999999999999864 78888777777666553
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.07 E-value=2.9e-09 Score=86.93 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.+...+|.++..+|+|++|+.+|++++.+ ... ...++.++|.+|..+|+|++|+++|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPA-----------------NAVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCC-----------------CHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 44567788999999999999999999987 111 1235789999999999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccH
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGY 385 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~y 385 (441)
+.+ +|.....+.++|.+|..+|++++| ...|++++++. |+.+ ....+++.++...|+|
T Consensus 73 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~A------~~~~~~~~~~~----p~~~---~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 73 ICI--------DPAYSKAYGRMGLALSSLNKHVEA------VAYYKKALELD----PDNE---TYKSNLKIAELKLREA 130 (131)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS----TTCH---HHHHHHHHHHHHHTTC
T ss_pred Hhc--------CccCHHHHHHHHHHHHHhCCHHHH------HHHHHHHHhcC----ccch---HHHHHHHHHHHHHhcC
Confidence 986 344466889999999999999987 88999998873 2222 3455677777776654
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.07 E-value=2.5e-09 Score=93.49 Aligned_cols=114 Identities=15% Similarity=0.065 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
.....|..+..+|+|++|+..|++||.+........++... .....+.....+++|+|.+|..+|+|++|+..+++||
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP--EWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH--HHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH--HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44567899999999999999999999996433220000000 0000011234568899999999999999999999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
.+ .|.....+.++|.+|..+|++++| ...|++++++
T Consensus 91 ~~--------~p~~~~a~~~~g~~~~~~g~~~~A------~~~~~~al~l 126 (162)
T 3rkv_A 91 KR--------EETNEKALFRRAKARIAAWKLDEA------EEDLKLLLRN 126 (162)
T ss_dssp HH--------STTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred hc--------CCcchHHHHHHHHHHHHHhcHHHH------HHHHHHHHhc
Confidence 98 466677899999999999999987 8999999998
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.06 E-value=1e-08 Score=83.83 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchh
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALE 276 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~ 276 (441)
..|..+..+|+|++|+.+|++++...+....+..++|.++..+|+|++|..+|++++.+...... . .
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~--------~ 75 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-----D--------Y 75 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-----C--------H
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-----h--------H
Confidence 35777789999999999999999966666777788999999999999999999999998422110 0 0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhc
Q 013549 277 EVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAM 337 (441)
Q Consensus 277 ~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~ 337 (441)
.....++.++|.+|..+|+|++|.++|++++.+ .+ +| .....++.++...++
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~-~~---~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE-----HR-TP---DVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CC-CH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CC-CH---HHHHHHHHHHHHHHH
Confidence 012346789999999999999999999999985 23 34 445555666655443
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.05 E-value=4.1e-09 Score=87.36 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
+....|..+..+|+|++|+.+|++++... .. +.. ...++.++|.+|..+|+|++|++.|++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~----~~~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY---PN----GVY----------TPNALYWLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SS----STT----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CC----Ccc----------cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34667888999999999999999999871 11 111 12467899999999999999999999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
.+ .|++|.+..++.++|.+|..+|++++| ...|+++++..
T Consensus 67 ~~-----~p~~~~~~~~~~~la~~~~~~g~~~~A------~~~~~~~~~~~ 106 (129)
T 2xev_A 67 SR-----YPTHDKAAGGLLKLGLSQYGEGKNTEA------QQTLQQVATQY 106 (129)
T ss_dssp HH-----CTTSTTHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHS
T ss_pred HH-----CCCCcccHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHC
Confidence 85 578888899999999999999999987 88999998864
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.05 E-value=3e-09 Score=87.06 Aligned_cols=104 Identities=12% Similarity=0.162 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.....+|.++..+|+|++|+.+|++++.+ ... ...++.++|.+|..+|+|++|.++|+++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL---DPT-----------------NMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCc-----------------cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44567889999999999999999999987 111 1245789999999999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+.+... .+.+++....++.++|.+|..+|++++| ...|++++++
T Consensus 65 ~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~ 108 (131)
T 1elr_A 65 IEVGRE-NREDYRQIAKAYARIGNSYFKEEKYKDA------IHFYNKSLAE 108 (131)
T ss_dssp HHHHHH-STTCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred Hhhccc-cchhHHHHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHh
Confidence 998864 3566777789999999999999999987 8899999886
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.05 E-value=6.1e-09 Score=87.23 Aligned_cols=101 Identities=14% Similarity=0.004 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549 225 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 225 ~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~ 304 (441)
.......+|.++..+|+|++|+.+|++++.+ ... ...++.++|.+|..+|+|++|+..|+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPL-----------------VAVYYTNRALCYLKMQQPEQALADCR 67 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcC-----------------cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3456678899999999999999999999998 111 12467899999999999999999999
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
+++.+ +|.....+.++|.+|..+|++++| ...|++++++..
T Consensus 68 ~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~p 108 (137)
T 3q49_B 68 RALEL--------DGQSVKAHFFLGQCQLEMESYDEA------IANLQRAYSLAK 108 (137)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHh--------CchhHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHCh
Confidence 99987 355567899999999999999987 899999999974
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.05 E-value=5.7e-09 Score=84.47 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.+...+|.++...|+|++|+.+|++++.+ ... ...++.++|.+|..+|+|++|+.+|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPN-----------------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcC-----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45567888999999999999999999987 111 1235789999999999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHh
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALAR 382 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~ 382 (441)
+.+ +|....++.++|.+|..+|++++| ...|++++++. |+++ ....+++.++..+
T Consensus 70 ~~~--------~~~~~~~~~~la~~~~~~~~~~~A------~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~ 124 (125)
T 1na0_A 70 LEL--------DPNNAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD----PNNA---EAKQNLGNAKQKQ 124 (125)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCH---HHHHHHHHHHHHH
T ss_pred HHh--------CCccHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC----CCcH---HHHHHHHHHHHhc
Confidence 976 344456788999999999999987 88999998773 3333 3344555555443
No 164
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.02 E-value=2.6e-10 Score=118.07 Aligned_cols=232 Identities=15% Similarity=0.118 Sum_probs=73.7
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL 157 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~ 157 (441)
..|+.++|..+++++ +||. +...||..+..+|++.+|++.|.++- ....+...+..+.
T Consensus 15 ~~~~ld~A~~fae~~----------~~~~---vWs~La~A~l~~g~~~eAIdsfika~---------D~~~y~~V~~~ae 72 (449)
T 1b89_A 15 HIGNLDRAYEFAERC----------NEPA---VWSQLAKAQLQKGMVKEAIDSYIKAD---------DPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC----------CChH---HHHHHHHHHHHcCCHHHHHHHHHcCC---------CHHHHHHHHHHHH
Confidence 356788999988887 3553 88899999999999999999998852 1124555666677
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLH 237 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~ 237 (441)
.+|++++|..+++.+.+...... + ..-.+..|...|++++++.+|+. ....+..++|..+.
T Consensus 73 ~~g~~EeAi~yl~~ark~~~~~~---------i----~~~Li~~Y~Klg~l~e~e~f~~~------pn~~a~~~IGd~~~ 133 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKKARESY---------V----ETELIFALAKTNRLAELEEFING------PNNAHIQQVGDRCY 133 (449)
T ss_dssp -------------------------------------------------CHHHHTTTTTC------C-------------
T ss_pred hCCCHHHHHHHHHHHHHhCccch---------h----HHHHHHHHHHhCCHHHHHHHHcC------CcHHHHHHHHHHHH
Confidence 88999999998887764321100 0 00123334467777777766643 12234456677777
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh--
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT--EEL-- 313 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~--e~~-- 313 (441)
.+|+|++|..+|.++ . . ...||.++..+|+|++|.+.|++|..+. .++
T Consensus 134 ~~g~yeeA~~~Y~~a--------~-----n---------------~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~ 185 (449)
T 1b89_A 134 DEKMYDAAKLLYNNV--------S-----N---------------FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 185 (449)
T ss_dssp ---CTTTHHHHHHHT--------T-----C---------------HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHh--------h-----h---------------HHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHH
Confidence 777777777777754 0 0 3567777777777777777777774431 110
Q ss_pred -----------------hCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHH
Q 013549 314 -----------------FGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTD 376 (441)
Q Consensus 314 -----------------lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~ 376 (441)
+. .||+-.. .+..+|..+|++++| ..+++++|.+- +.|-...+- ++
T Consensus 186 aCv~~~ef~lA~~~~l~L~-~~ad~l~---~lv~~Yek~G~~eEa------i~lLe~aL~le----~ah~~~fte---l~ 248 (449)
T 1b89_A 186 ACVDGKEFRLAQMCGLHIV-VHADELE---ELINYYQDRGYFEEL------ITMLEAALGLE----RAHMGMFTE---LA 248 (449)
T ss_dssp HHHHTTCHHHHHHTTTTTT-TCHHHHH---HHHHHHHHTTCHHHH------HHHHHHHTTST----TCCHHHHHH---HH
T ss_pred HHHHcCcHHHHHHHHHHHH-hCHhhHH---HHHHHHHHCCCHHHH------HHHHHHHhCCc----HHHHHHHHH---HH
Confidence 12 5666543 466889999998886 67788776442 334443333 34
Q ss_pred HHHH--HhccHHHHHHHhhch
Q 013549 377 IVAL--ARGGYAEALSVQQNR 395 (441)
Q Consensus 377 ~~~~--~~g~yaeal~~~~~r 395 (441)
++|. .-++.-|.+..+..|
T Consensus 249 il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 249 ILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 5543 445566666665444
No 165
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.01 E-value=6e-09 Score=91.89 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=97.0
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHH-HH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEY-LH 237 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~-~~ 237 (441)
.|++++|..++++++... +.. .......|.++..+|+|++|+.+|++++...+....+...+|.+ +.
T Consensus 23 ~~~~~~A~~~~~~al~~~----p~~--------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN----PQN--------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY 90 (177)
T ss_dssp ----CCCCHHHHHHHHHC----CSC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC----CCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 466666666666665331 110 11223467888899999999999999999666667778889998 78
Q ss_pred HccCh--HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 013549 238 ATRNF--LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG 315 (441)
Q Consensus 238 ~qG~y--~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG 315 (441)
.+|++ ++|+.+|++++++ ... ...++.++|.+|..+|+|++|+.+|++++.+ .
T Consensus 91 ~~~~~~~~~A~~~~~~al~~---~p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~ 145 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALAL---DSN-----------------EITALMLLASDAFMQANYAQAIELWQKVMDL-----N 145 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----C
T ss_pred hcCCcchHHHHHHHHHHHHh---CCC-----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----C
Confidence 99999 9999999999988 111 1245789999999999999999999999975 4
Q ss_pred CCCchHHHHHHHH
Q 013549 316 SHHPKVGVVLTCL 328 (441)
Q Consensus 316 ~~HP~va~~l~nL 328 (441)
++++.....+..+
T Consensus 146 p~~~~~~~~~~~i 158 (177)
T 2e2e_A 146 SPRINRTQLVESI 158 (177)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCccHHHHHHHH
Confidence 5666655544433
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.01 E-value=1.4e-09 Score=91.66 Aligned_cols=93 Identities=22% Similarity=0.082 Sum_probs=80.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
.|..+..+|++++|+..|++++...+....+...+|.++..+|++++|+..|++|+++ . |+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~---------------P~- 83 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---D---------------PK- 83 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C---------------TT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C---------------CC-
Confidence 5777889999999999999999977778888899999999999999999999999998 1 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
...++.+||.+|..+|++++|+..|++++.+.
T Consensus 84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 84 -DIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12467899999999999999999999999763
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.00 E-value=8.1e-09 Score=82.86 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=86.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
.|..+..+|+|++|..+|++++...+....+...+|.++..+|+|++|...|++++++. ..
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~---------------- 70 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PD---------------- 70 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT----------------
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cc----------------
Confidence 46677899999999999999999666667778889999999999999999999999881 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 013549 278 VALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMF 332 (441)
Q Consensus 278 ~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly 332 (441)
...++.++|.+|..+|+|++|..+|++++.+ .+++|. ...+++.+.
T Consensus 71 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~---~~~~l~~~~ 116 (118)
T 1elw_A 71 -WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQ---LKEGLQNME 116 (118)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHH---HHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHhh
Confidence 1235789999999999999999999999874 455554 444454443
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.00 E-value=6e-09 Score=93.65 Aligned_cols=114 Identities=20% Similarity=0.135 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh-------hh-hhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS-------IL-GVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCE 177 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~-------~l-g~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~ 177 (441)
..+..+.++|..+...|+|++|++.|.+++.+.+. .. +.+...+.|++.++..+|+|++|...++++++++.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 36778999999999999999999999999999987 22 12344899999999999999999999998887755
Q ss_pred hcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHH----HHHHHHHHHccChHHHHHHHHHHH
Q 013549 178 KHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAA----LSYGEYLHATRNFLLAKKFYQKVI 253 (441)
Q Consensus 178 ~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a----~~~a~~~~~qG~y~eA~~ly~rAL 253 (441)
+..... +....+. ++.|.++..+|+|+||+..|++||
T Consensus 89 ~~~e~~---------------------------------------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 89 RRGELN---------------------------------------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHCCTT---------------------------------------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCC---------------------------------------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 554322 2222333 667777777788888888888888
Q ss_pred HHHHh
Q 013549 254 EVLAE 258 (441)
Q Consensus 254 ~i~~~ 258 (441)
++--+
T Consensus 130 el~p~ 134 (159)
T 2hr2_A 130 EMIEE 134 (159)
T ss_dssp HHHHH
T ss_pred hcCCC
Confidence 77433
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.99 E-value=1.5e-09 Score=90.10 Aligned_cols=93 Identities=12% Similarity=0.178 Sum_probs=74.6
Q ss_pred HcCCHHHHHHHHHhhhhc---cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHH
Q 013549 204 AHGNLESAESFFKGLQEE---EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL 280 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~---~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~ 280 (441)
.+|+|++|+.+|++++.. .+....+..++|.+|..+|+|++|+..|++++++. . + ..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p---------------~--~~ 61 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---P---------------N--HQ 61 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T---------------T--CH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C---------------C--ch
Confidence 479999999999999995 45566777889999999999999999999999981 1 1 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH
Q 013549 281 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV 321 (441)
Q Consensus 281 ~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v 321 (441)
.++.++|.+|..+|+|++|+++|++++.+. +++|.+
T Consensus 62 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 97 (117)
T 3k9i_A 62 ALRVFYAMVLYNLGRYEQGVELLLKIIAET-----SDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHH
Confidence 467899999999999999999999999864 666654
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.98 E-value=4e-09 Score=88.88 Aligned_cols=95 Identities=19% Similarity=0.066 Sum_probs=79.9
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
...+|..+..+|+|++|+..|++++++ .- + ...++.+||.+|..+|++++|+..|++|+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P---------------~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EP---------------E--REEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---ST---------------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CC---------------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466788899999999999999999998 11 1 124678999999999999999999999998
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+ .|++| ..+.+||.+|..+|++++| ...|++++++
T Consensus 80 l-----~P~~~---~~~~~la~~~~~~g~~~~A------~~~~~~al~~ 114 (121)
T 1hxi_A 80 L-----DPKDI---AVHAALAVSHTNEHNANAA------LASLRAWLLS 114 (121)
T ss_dssp H-----CTTCH---HHHHHHHHHHHHHHHHHHH------HHHHHHHHC-
T ss_pred h-----CCCCH---HHHHHHHHHHHHcCCHHHH------HHHHHHHHHh
Confidence 6 34454 5789999999999999987 8899999875
No 171
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1.9e-08 Score=98.48 Aligned_cols=236 Identities=11% Similarity=0.064 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-------HHHHhcCCcchhHHHHHHHHHHHHhc
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALA-------GLYLQLGQDDTSSVVADKCLQLCEKH 179 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La-------~l~~~~G~~~~A~~l~~~~L~i~~~~ 179 (441)
....+...|.-+ .-+++.+|++.|.+++.+.+... .+|.+++ .++..++++.++...+++.+.+.-..
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~----Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~ 80 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNYDESAC----DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMST 80 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGG
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhh----HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 345556666665 58999999999999998887653 2555552 23333333333332222222111000
Q ss_pred CCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Q 013549 180 KPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAE 258 (441)
Q Consensus 180 ~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~ 258 (441)
..-.+ . + .|=|.+ +. .-.....+.+.|+.++..+|+|++|.++|++++..
T Consensus 81 l~a~~----~-------~-------~g~y~~--------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--- 131 (282)
T 4f3v_A 81 LNARI----A-------I-------GGLYGD--------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--- 131 (282)
T ss_dssp GCCEE----E-------C-------CTTTCC--------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---
T ss_pred hhhhh----c-------c-------CCcccc--------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 00000 0 0 000000 00 00011345677899999999999999999886643
Q ss_pred hcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHhhc
Q 013549 259 QKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAM 337 (441)
Q Consensus 259 ~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~qG~ 337 (441)
+ |++ + ...++|.++...|+|++|+.+|+++ ....+|.. .....+||.++..+|+
T Consensus 132 ----------~-----p~~--~-~~~~~a~l~~~~~r~~dA~~~l~~a-------~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 132 ----------G-----SEH--L-VAWMKAVVYGAAERWTDVIDQVKSA-------GKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp ----------T-----CHH--H-HHHHHHHHHHHTTCHHHHHHHHTTG-------GGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------C-----Cch--H-HHHHHHHHHHHcCCHHHHHHHHHHh-------hccCCcccHHHHHHHHHHHHHHCCC
Confidence 1 222 3 6789999999999999999999755 33346765 4589999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCCCCCcc-hHhhhccHHHHHHHhccHHHHHHHhhchhhHHHHHHHHHHHHHhccChh
Q 013549 338 QEHSSALLIQEGLYRRALEFLKAPPLESEG-VETKVDRTDIVALARGGYAEALSVQQNRKDEGERMKRWAEAAWRNRRVS 416 (441)
Q Consensus 338 ~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~-~~~~l~nl~~~~~~~g~yaeal~~~~~r~~eae~~~~~a~~~~~~~r~~ 416 (441)
+++| +..|++++. ++..|. ......+++.++..+|+.+ ||..+.+++.....+ ..
T Consensus 187 ~~eA------l~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr~d-----------eA~~~l~~a~a~~P~--~~ 242 (282)
T 4f3v_A 187 FTEA------ERRLTEAND-----SPAGEACARAIAWYLAMARRSQGNES-----------AAVALLEWLQTTHPE--PK 242 (282)
T ss_dssp HHHH------HHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHSCC--HH
T ss_pred HHHH------HHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCCc--HH
Confidence 9987 899999862 222244 3445567777777766554 555666666666666 56
Q ss_pred HHHHhcccC
Q 013549 417 LAEALNFSE 425 (441)
Q Consensus 417 ~~~~l~~~~ 425 (441)
..++|....
T Consensus 243 ~~~aL~~~~ 251 (282)
T 4f3v_A 243 VAAALKDPS 251 (282)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 777776433
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.2e-08 Score=85.92 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=84.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCc---hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 197 VKGLVELAHGNLESAESFFKGLQEEEGCT---GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~~~~~~---~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
..+..+..+|+|++|+.+|++++...+.. ..+..++|.++..+|+|++|+..|++++.+ ...
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~------------ 97 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGG------------ 97 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSC------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---Ccc------------
Confidence 35777789999999999999999955544 566778899999999999999999999988 111
Q ss_pred chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHH
Q 013549 274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVL 325 (441)
Q Consensus 274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l 325 (441)
...++.++|.+|..+|+|++|..+|++++.+ .++++.+...+
T Consensus 98 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l 139 (148)
T 2dba_A 98 -----DVKALYRRSQALEKLGRLDQAVLDLQRCVSL-----EPKNKVFQEAL 139 (148)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSCHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHH
Confidence 1245789999999999999999999999986 46666554433
No 173
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.93 E-value=1.2e-08 Score=81.93 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.....+|..+..+|+|++|+.+|++++.+. .. ...++.++|.+|..+|+|++|..+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD---PH-----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CC-----------------cHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 445677889999999999999999999871 11 1235789999999999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+.+ +|.....+.++|.+|..+|++++| ...|++++++
T Consensus 65 ~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~~~~~ 101 (118)
T 1elw_A 65 VDL--------KPDWGKGYSRKAAALEFLNRFEEA------KRTYEEGLKH 101 (118)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTT
T ss_pred HHh--------CcccHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHc
Confidence 986 344556789999999999999887 8889988765
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.93 E-value=1.4e-08 Score=102.50 Aligned_cols=138 Identities=15% Similarity=0.138 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
....+|..+..+|+|++|+..|++||++............. ....| ....+++|+|.+|..+|+|++|+++|++||
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~--~~~~~--~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG--AKLQP--VALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHH--GGGHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHH--HHHHH--HHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34567889999999999999999999975332100000000 00111 234578899999999999999999999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHH
Q 013549 308 TKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAE 387 (441)
Q Consensus 308 ~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yae 387 (441)
.+ +|....++.++|.+|..+|++++| ...|++|+++. |+++ ....+++.++...+++.+
T Consensus 301 ~~--------~p~~~~a~~~lg~~~~~~g~~~eA------~~~l~~Al~l~----P~~~---~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 301 EI--------DPSNTKALYRRAQGWQGLKEYDQA------LADLKKAQEIA----PEDK---AIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TT--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC----TTCH---HHHHHHHHHHHHHHHHHH
T ss_pred Hh--------CchhHHHHHHHHHHHHHccCHHHH------HHHHHHHHHhC----CCCH---HHHHHHHHHHHHHHHHHH
Confidence 85 466678899999999999999987 89999999873 3333 344556666666666655
Q ss_pred HHH
Q 013549 388 ALS 390 (441)
Q Consensus 388 al~ 390 (441)
+..
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.92 E-value=9.1e-09 Score=103.93 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=95.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhh----------------ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 198 KGLVELAHGNLESAESFFKGLQE----------------EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~----------------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
.|..+..+|+|++|+..|++++. ..+....+..++|.+|..+|+|++|+.+|++||++ ..
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p- 304 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---DP- 304 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CT-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---Cc-
Confidence 56777899999999999999998 22223455678899999999999999999999987 11
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 262 FSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
+ ...++.++|.+|..+|+|++|+..|++|+.+. |.-.....+|+.++..+++++++
T Consensus 305 --------------~--~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 --------------S--NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp --------------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------h--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 13468999999999999999999999999873 44456778888999999998876
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.91 E-value=2.5e-09 Score=88.69 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=71.2
Q ss_pred HccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 238 ATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 238 ~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
.+|+|++|+.+|++||++ ... .|+ ...++.+||.+|..+|+|++|+++|++++.+
T Consensus 2 ~~g~~~~A~~~~~~al~~---~~~------------~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------- 56 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS---GLQ------------GKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-------- 56 (117)
T ss_dssp -----CCCHHHHHHHHSS---CCC------------HHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred CCCcHHHHHHHHHHHHHc---CCC------------Ccc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 479999999999999986 100 122 2456889999999999999999999999987
Q ss_pred CchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 318 HPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 318 HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+|+...++.++|.+|..+|++++| +..|++++++.
T Consensus 57 ~p~~~~~~~~l~~~~~~~g~~~~A------~~~~~~al~~~ 91 (117)
T 3k9i_A 57 FPNHQALRVFYAMVLYNLGRYEQG------VELLLKIIAET 91 (117)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 455567889999999999999987 89999998874
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.2e-08 Score=85.74 Aligned_cols=102 Identities=9% Similarity=0.013 Sum_probs=84.5
Q ss_pred chHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013549 225 TGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILT 304 (441)
Q Consensus 225 ~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~ 304 (441)
.......+|..+..+|+|++|+.+|++++++. .. . .....++.++|.+|..+|+|++|+.+|+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~-------------~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 89 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---AT-------------P-QDQAVLHRNRAACHLKLEDYDKAETEAS 89 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CC-------------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---cc-------------c-hHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34556778999999999999999999999761 10 0 0123467899999999999999999999
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 305 RTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 305 rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+++.+ +|.....+.++|.+|..+|++++| ...|++++++
T Consensus 90 ~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A------~~~~~~al~~ 128 (148)
T 2dba_A 90 KAIEK--------DGGDVKALYRRSQALEKLGRLDQA------VLDLQRCVSL 128 (148)
T ss_dssp HHHHH--------TSCCHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHH
T ss_pred HHHhh--------CccCHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHc
Confidence 99987 455567889999999999999987 8999999887
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.90 E-value=2.2e-09 Score=106.77 Aligned_cols=154 Identities=11% Similarity=0.072 Sum_probs=90.1
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~ 183 (441)
.+..+..+.++|..+..+|+|++|+..|++++.+.+... .+..+|++.++....
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~------------~~~~~~~~~~~~~~l-------------- 228 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF------------MFQLYGKYQDMALAV-------------- 228 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH------------HHTCCHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch------------hhhhcccHHHHHHHH--------------
Confidence 356889999999999999999999999999988765531 111222222221100
Q ss_pred chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549 184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS 263 (441)
Q Consensus 184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~ 263 (441)
...+....+.++..+|+|++|+..|+++|...+....+..++|.+|..+|+|++|+..|++|+++. ..
T Consensus 229 -------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~---p~-- 296 (338)
T 2if4_A 229 -------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA---PD-- 296 (338)
T ss_dssp -------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CC--
Confidence 011223467788899999999999999999767677788899999999999999999999999882 11
Q ss_pred CCCCccccccchhHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 013549 264 DMNTLGSCNMALEEVALAATFALGQL-EAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 264 ~~~~lg~~~~~~~~~~~~al~nLg~l-y~~qG~y~eAe~l~~rAL~i~ 310 (441)
...+..+|+.+ ...+++++++..+|.+++...
T Consensus 297 ---------------~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 297 ---------------DKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp ------------------------------------------------
T ss_pred ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 01245678877 455677888888998888654
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.90 E-value=4e-09 Score=84.10 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.+...+|.++..+|+|++|+.+|++++++ ... ...++.++|.+|..+|+|++|+++|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 66 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPE-----------------ESKYWLMKGKALYNLERYEEAVDCYNYV 66 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcC-----------------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34456677888888888888888888877 111 1235678888888888888888888888
Q ss_pred HHHHHHhhCCCCch--HHHHHHHHHHHHHHh-hchhhhhhhHHHHHHHHHHHHH
Q 013549 307 LTKTEELFGSHHPK--VGVVLTCLALMFRNK-AMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 307 L~i~e~~lG~~HP~--va~~l~nLa~ly~~q-G~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+.+ .|. ...++.++|.+|..+ |++++| ...+++++..
T Consensus 67 ~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~A------~~~~~~~~~~ 106 (112)
T 2kck_A 67 INV--------IEDEYNKDVWAAKADALRYIEGKEVEA------EIAEARAKLE 106 (112)
T ss_dssp HHT--------SCCTTCHHHHHHHHHHHTTCSSCSHHH------HHHHHHHGGG
T ss_pred HHh--------CcccchHHHHHHHHHHHHHHhCCHHHH------HHHHHHHhhc
Confidence 865 233 456778888888888 888776 7777777544
No 180
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=2.8e-07 Score=91.13 Aligned_cols=236 Identities=9% Similarity=-0.025 Sum_probs=170.7
Q ss_pred HHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhhhh
Q 013549 63 LQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG--NYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 63 ~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG--~y~eA~e~~~ral~i~~~ 140 (441)
..+.++.....+ ..+..++|+.+++++|.+- |+..++.+..+.++...| +|++++..+.+++.+.+.
T Consensus 33 ~~~~~~~~a~~~---~~e~s~~aL~~t~~~L~~n--------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk 101 (306)
T 3dra_A 33 KQIMGLLLALMK---AEEYSERALHITELGINEL--------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK 101 (306)
T ss_dssp HHHHHHHHHHHH---TTCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHC--------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc
Confidence 344444444322 3344579999999999854 445678999999999999 999999999999988876
Q ss_pred hhhhhHHHHHHHHHHH----Hhc---CCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHH--HH
Q 013549 141 ILGVRVAAMEALAGLY----LQL---GQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE--SA 211 (441)
Q Consensus 141 ~lg~~~~al~~La~l~----~~~---G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~--eA 211 (441)
.. .+++....+. ..+ +++.++..++++++++--+ +.... ...+.+....|+++ ++
T Consensus 102 ~y----~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-------ny~aW-----~~R~~vl~~l~~~~~~~E 165 (306)
T 3dra_A 102 NY----QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-------NHHVW-----SYRKWLVDTFDLHNDAKE 165 (306)
T ss_dssp CC----HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-------CHHHH-----HHHHHHHHHTTCTTCHHH
T ss_pred cH----HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-------CHHHH-----HHHHHHHHHhcccChHHH
Confidence 53 2555555554 445 6788888888888743211 11222 23355556788998 99
Q ss_pred HHHHHhhhhccCCchHHHHHHHHHHHHccC------hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHH
Q 013549 212 ESFFKGLQEEEGCTGSAALSYGEYLHATRN------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFA 285 (441)
Q Consensus 212 e~l~~~aL~~~~~~~~~a~~~a~~~~~qG~------y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~n 285 (441)
..++.+++..++....+-...+.++...|+ ++++.+++.++|.+ . +. .-.+-+.
T Consensus 166 L~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~--------p~---------n~SaW~y 225 (306)
T 3dra_A 166 LSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---C--------PQ---------NPSTWNY 225 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---C--------SS---------CHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---C--------CC---------CccHHHH
Confidence 999999999766666666666778888887 99999999999988 1 11 1246789
Q ss_pred HHHHHHHcCCHHH-HHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHH
Q 013549 286 LGQLEAHMGNFGD-AEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 286 Lg~ly~~qG~y~e-Ae~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
++.++...|+..+ ..++..+++.+ ++.+|.-...+..||.+|..+|+.++| ..+|+++.+
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~al~~la~~~~~~~~~~~A------~~~~~~l~~ 286 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDL-----EKDQVTSSFALETLAKIYTQQKKYNES------RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEG-----GGTEESCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhc-----cCCCCCCHHHHHHHHHHHHccCCHHHH------HHHHHHHHh
Confidence 9999999999554 55566666653 233566667899999999999998887 788888764
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.84 E-value=4e-09 Score=104.81 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=76.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCch-----------------HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTG-----------------SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK 260 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~-----------------~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~ 260 (441)
.|..+..+|+|++|+.+|++++...+... .+..++|.+|..+|+|++|+..|++||++ ..
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p 261 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE---EE 261 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH---CT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC
Confidence 46677789999999999999998433222 25678899999999999999999999998 11
Q ss_pred ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh-chh
Q 013549 261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA-MQE 339 (441)
Q Consensus 261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG-~~e 339 (441)
. ...+++++|.+|..+|+|++|+..|++|+.+. |.-...+.+|+.+...+. ..+
T Consensus 262 ~-----------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 262 K-----------------NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp T-----------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred C-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHH
Confidence 1 13468999999999999999999999999864 344456667777755443 443
Q ss_pred hhhhhHHHHHHHHHHHHHh
Q 013549 340 HSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 340 eA~~~~~Ae~ly~rAL~i~ 358 (441)
+ +..+|++++...
T Consensus 317 ~------a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 K------QKEMYKGIFKGK 329 (338)
T ss_dssp -------------------
T ss_pred H------HHHHHHHhhCCC
Confidence 3 367888877653
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.82 E-value=2.2e-08 Score=79.69 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=79.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhH
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEE 277 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~ 277 (441)
.|.++..+|+|++|..+|++++...+....+..++|.++..+|+|++|+.+|++++++. . ...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~----~~~--------- 74 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI----E----DEY--------- 74 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----C----CTT---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----c----ccc---------
Confidence 57778899999999999999999666666778889999999999999999999999871 1 100
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 013549 278 VALAATFALGQLEAHM-GNFGDAEEILTRTLTK 309 (441)
Q Consensus 278 ~~~~al~nLg~ly~~q-G~y~eAe~l~~rAL~i 309 (441)
...++.++|.+|..+ |++++|++++++++..
T Consensus 75 -~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 75 -NKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp -CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred -hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 124578999999999 9999999999998753
No 183
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.73 E-value=8.9e-09 Score=106.66 Aligned_cols=167 Identities=16% Similarity=0.040 Sum_probs=43.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhH
Q 013549 114 MSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSR 193 (441)
Q Consensus 114 La~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~ 193 (441)
+..+....|+.++|.+.+++. .. ...|..|+..+.++|+..+|...|.++-+ + ....
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~--------~~-~~vWs~La~A~l~~g~~~eAIdsfika~D------~------~~y~-- 65 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC--------NE-PAVWSQLAKAQLQKGMVKEAIDSYIKADD------P------SSYM-- 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC--------CC-hHHHHHHHHHHHHcCCHHHHHHHHHcCCC------H------HHHH--
Confidence 455667889999999999986 11 13788999999999999999988876511 1 0110
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 194 ANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 194 a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
..+......|+|++|+++++.+++..+. +.+-..++..|.+.|++.+++++++. .
T Consensus 66 ---~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~---------p------------ 120 (449)
T 1b89_A 66 ---EVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING---------P------------ 120 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTTC---------C------------
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC---------C------------
Confidence 1122344699999999999999984322 33445567778889999999977741 0
Q ss_pred chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHH
Q 013549 274 ALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRR 353 (441)
Q Consensus 274 ~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~r 353 (441)
...+.+++|..+.++|+|++|..+|.++ ..+.+||.++..+|+|++| ...|++
T Consensus 121 -----n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~A------Vea~~K 173 (449)
T 1b89_A 121 -----NNAHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAA------VDGARK 173 (449)
T ss_dssp ---------------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHH------HHHHHH
T ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHH------HHHHHH
Confidence 1136789999999999999999999987 5889999999999999987 777777
Q ss_pred HH
Q 013549 354 AL 355 (441)
Q Consensus 354 AL 355 (441)
|.
T Consensus 174 A~ 175 (449)
T 1b89_A 174 AN 175 (449)
T ss_dssp HT
T ss_pred cC
Confidence 73
No 184
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.69 E-value=5.8e-07 Score=89.05 Aligned_cols=201 Identities=14% Similarity=0.086 Sum_probs=131.2
Q ss_pred HHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcch
Q 013549 85 GMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDT 164 (441)
Q Consensus 85 Al~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~ 164 (441)
|+..+++.++. + +++ ..++..+|.++..+|++++|+..+++.+...+.. ......--++.++..+|+.+.
T Consensus 85 a~~~l~~l~~~-----~--~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKD-----K--QNS-PYELYLLATAQAILGDLDKSLETCVEGIDNDEAE--GTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTT-----S--CCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--THHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhc-----C--CCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--CcHHHHHHHHHHHHHCCCHHH
Confidence 67777776642 1 222 2335699999999999999999999986654310 111233446778999999999
Q ss_pred hHHHHHHHHHHHHhcCCC-cchhhhhhHhHHHHHHHHHHHHcC--CHHHHHHHHHhhhhccCC--chHHHHHHHHHHHHc
Q 013549 165 SSVVADKCLQLCEKHKPE-NYKTYGAVNSRANAVKGLVELAHG--NLESAESFFKGLQEEEGC--TGSAALSYGEYLHAT 239 (441)
Q Consensus 165 A~~l~~~~L~i~~~~~~~-~~~~~~~l~~~a~al~gl~~~~qG--~y~eAe~l~~~aL~~~~~--~~~~a~~~a~~~~~q 239 (441)
|...+++..++- ++ -|.+...+ .....+.+.+.+| +|.+|..+|++.....+. ......+ ++..+
T Consensus 155 A~k~l~~~~~~~----~d~~~~~d~~l---~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~ 224 (310)
T 3mv2_B 155 ASTIFDNYTNAI----EDTVSGDNEMI---LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ 224 (310)
T ss_dssp HHHHHHHHHHHS----CHHHHHHHHHH---HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHhcC----ccccccchHHH---HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc
Confidence 988887764322 10 01111112 1112344556666 999999999998776554 1222333 78899
Q ss_pred cChHHHHHHHHHHHHHHHh--hcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 240 RNFLLAKKFYQKVIEVLAE--QKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 240 G~y~eA~~ly~rAL~i~~~--~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
|+|++|+..+++.++..-+ .+. .. .|+ ...++.|+..+...+|+ +|.+++.|+.. .-|+
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~-----~~-----~p~--~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-----~~P~ 285 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKE-----NA-----VLY--KPTFLANQITLALMQGL--DTEDLTNQLVK-----LDHE 285 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCH-----HH-----HSS--HHHHHHHHHHHHHHTTC--TTHHHHHHHHH-----TTCC
T ss_pred CCHHHHHHHHHHHHHhcccccccc-----cC-----CCC--CHHHHHHHHHHHHHhCh--HHHHHHHHHHH-----hCCC
Confidence 9999999999977665211 110 00 012 13467899999999998 89999888765 4599
Q ss_pred CchHHHH
Q 013549 318 HPKVGVV 324 (441)
Q Consensus 318 HP~va~~ 324 (441)
||-+...
T Consensus 286 hp~i~d~ 292 (310)
T 3mv2_B 286 HAFIKHH 292 (310)
T ss_dssp CHHHHHH
T ss_pred ChHHHHH
Confidence 9987653
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.68 E-value=1.5e-07 Score=72.83 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.+...+|.++..+|+|++|+.+|++++++ ... ...++.++|.+|..+|+|++|+.+|+++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPN-----------------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCC-----------------CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44567788999999999999999999987 111 1235789999999999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKA 336 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG 336 (441)
+.+ +|.....+.++|.+|..+|
T Consensus 70 ~~~--------~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 70 LEL--------DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred Hhc--------CCCCHHHHHHHHHHHHhcC
Confidence 986 3555567888999887664
No 186
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=3.6e-06 Score=83.11 Aligned_cols=222 Identities=10% Similarity=-0.053 Sum_probs=160.6
Q ss_pred CChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHH
Q 013549 122 GNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLG--QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKG 199 (441)
Q Consensus 122 G~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G--~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~g 199 (441)
...++|+.++.+++.+.++.. .+++..+.+...+| .+.++..++++++.+- |. .......|...+..
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~----taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----Pk---~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 47 EYSERALHITELGINELASHY----TIWIYRFNILKNLPNRNLYDELDWCEEIALDN----EK---NYQIWNYRQLIIGQ 115 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----TT---CCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcHHH----HHHHHHHHHHHHcccccHHHHHHHHHHHHHHC----cc---cHHHHHHHHHHHHH
Confidence 444699999999999987753 47888888888888 8888888888887432 21 12344444443422
Q ss_pred HHHHHc---CCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChH--HHHHHHHHHHHHHHhhcccCCCCCccccccc
Q 013549 200 LVELAH---GNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFL--LAKKFYQKVIEVLAEQKDFSDMNTLGSCNMA 274 (441)
Q Consensus 200 l~~~~q---G~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~--eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~ 274 (441)
+. ... ++++++..++.+++..++....+-..-+.++...|+++ ++.+++.++|++ .-. |
T Consensus 116 ~~-~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~----------N-- 179 (306)
T 3dra_A 116 IM-ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLK----------N-- 179 (306)
T ss_dssp HH-HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTT----------C--
T ss_pred HH-HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCC----------C--
Confidence 22 223 89999999999999976666667666777888899999 999999999988 111 1
Q ss_pred hhHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHH
Q 013549 275 LEEVALAATFALGQLEAHMGN------FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQE 348 (441)
Q Consensus 275 ~~~~~~~al~nLg~ly~~qG~------y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae 348 (441)
..+.++.+.++...|+ ++++.+++.+++.+ +|.=-+..++++.++...|+..++ ..
T Consensus 180 -----~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~-----~~ 241 (306)
T 3dra_A 180 -----NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQ-----LE 241 (306)
T ss_dssp -----HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGG-----GH
T ss_pred -----HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHH-----HH
Confidence 2357888899999888 88888888888764 677788899999999999986654 25
Q ss_pred HHHHHHHHHhhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHh
Q 013549 349 GLYRRALEFLKAPPLESEGVETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 349 ~ly~rAL~i~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
.++.+++++-+ ..+.....+..++.++..+|++++|+...
T Consensus 242 ~~~~~~~~~~~----~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 242 EFSLQFVDLEK----DQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHTTEEGGG----TEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccC----CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 56666554321 12222335777888888778887777665
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=7.9e-08 Score=77.11 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.+...+|.++..+|+|++|+..|++|+++ ... ...++.++|.+|..+|+|++|++.|+++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQ-----------------NPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-----------------CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34567899999999999999999999998 111 1245789999999999999999999999
Q ss_pred HHHHHHhhCCCCch---HHHHHHHHHHHHHHhhchhhh
Q 013549 307 LTKTEELFGSHHPK---VGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 307 L~i~e~~lG~~HP~---va~~l~nLa~ly~~qG~~eeA 341 (441)
+.+ .|+++. ....+.++|.+|..+|++++|
T Consensus 65 l~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 65 LRY-----TSTAEHVAIRSKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HTS-----CSSTTSHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHh-----CCCccHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 975 344422 367889999999999988776
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.65 E-value=3.6e-08 Score=88.47 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=74.1
Q ss_pred HcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccCh----------HHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 204 AHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNF----------LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 204 ~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y----------~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
..++|++|.+.|++++...+....+..++|.++..+|+| ++|+..|++||+| . +.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---d-----P~------- 78 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---D-----PK------- 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---C-----TT-------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---C-----cC-------
Confidence 567899999999999998777888889999999998876 5999999999999 1 11
Q ss_pred chhHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHH
Q 013549 274 ALEEVALAATFALGQLEAHMG-----------NFGDAEEILTRTLTKT 310 (441)
Q Consensus 274 ~~~~~~~~al~nLg~ly~~qG-----------~y~eAe~l~~rAL~i~ 310 (441)
...+++|||.+|..+| +|++|+.+|++||+|.
T Consensus 79 -----~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 79 -----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 1357899999999986 8999999999999884
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.64 E-value=1.4e-07 Score=77.28 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=72.2
Q ss_pred HHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHH
Q 013549 209 ESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQ 288 (441)
Q Consensus 209 ~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ 288 (441)
++|...|++++...+....+..++|.+|..+|+|++|+..|++++++. .. ...++.+||.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-----------------~~~~~~~la~ 61 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PT-----------------YSVAWKWLGK 61 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----------------CHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CC-----------------cHHHHHHHHH
Confidence 468899999999767677788899999999999999999999999881 11 1245789999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 289 LEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 289 ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
+|..+|++++|+..|++++.+...
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 62 TLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999998754
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=1e-07 Score=76.51 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
..++.++|.++..+|+|++|++.|++++.+ +|....++.++|.+|..+|++++| ...|++++++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A------~~~~~~al~~~- 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQA------IQMCQQGLRYT- 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHTSC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHhC-
Confidence 346789999999999999999999999987 455567789999999999999987 89999998763
Q ss_pred cCCCCCcc---hHhhhccHHHHHHHhccHHHHHH
Q 013549 360 APPLESEG---VETKVDRTDIVALARGGYAEALS 390 (441)
Q Consensus 360 ~~~~~~~~---~~~~l~nl~~~~~~~g~yaeal~ 390 (441)
|++++ ....+.+++.++...|.+.+++.
T Consensus 69 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 69 ---STAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp ---SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 23322 24455677777777776655544
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.55 E-value=4.3e-07 Score=78.37 Aligned_cols=111 Identities=10% Similarity=0.054 Sum_probs=91.0
Q ss_pred cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHH
Q 013549 205 HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATF 284 (441)
Q Consensus 205 qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~ 284 (441)
.+++++|..+|+++.+..+.. +. +|.+|...+.+++|..+|++|.+. + ...+++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~-----g-----------------~~~a~~ 61 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL-----N-----------------SGNGCR 61 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT-----T-----------------CHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC-----C-----------------CHHHHH
Confidence 457899999999999844322 22 888888889999999999999875 2 124689
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----hhchhhhhhhHHHHHHHHHHHH
Q 013549 285 ALGQLEAH----MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN----KAMQEHSSALLIQEGLYRRALE 356 (441)
Q Consensus 285 nLg~ly~~----qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~----qG~~eeA~~~~~Ae~ly~rAL~ 356 (441)
+||.+|.. .+++++|.++|++|.+. .| ..++.+||.+|.. .+++++| ..+|++|.+
T Consensus 62 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A------~~~~~~Aa~ 125 (138)
T 1klx_A 62 FLGDFYENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQA------VKTFEKACR 125 (138)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHH------HHHHHHHHH
T ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHH------HHHHHHHHH
Confidence 99999999 99999999999999863 33 4678999999999 8888776 899999977
Q ss_pred H
Q 013549 357 F 357 (441)
Q Consensus 357 i 357 (441)
.
T Consensus 126 ~ 126 (138)
T 1klx_A 126 L 126 (138)
T ss_dssp T
T ss_pred C
Confidence 5
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.55 E-value=6.1e-07 Score=69.26 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
..++.++|.+|..+|+|++|+++|++++.+ +|....++.++|.+|..+|++++| ...|++++++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A------~~~~~~a~~~~- 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEA------IEYYQKALELD- 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHH------HHHHHHHHhcC-
Confidence 346789999999999999999999999986 345567889999999999999987 89999998873
Q ss_pred cCCCCCcchHhhhccHHHHHHHh
Q 013549 360 APPLESEGVETKVDRTDIVALAR 382 (441)
Q Consensus 360 ~~~~~~~~~~~~l~nl~~~~~~~ 382 (441)
|+++ ....+++.++..+
T Consensus 74 ---p~~~---~~~~~l~~~~~~~ 90 (91)
T 1na3_A 74 ---PNNA---EAKQNLGNAKQKQ 90 (91)
T ss_dssp ---TTCH---HHHHHHHHHHHHH
T ss_pred ---CCCH---HHHHHHHHHHHhc
Confidence 2333 3455677766554
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.54 E-value=2e-07 Score=76.40 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549 243 LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 322 (441)
Q Consensus 243 ~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va 322 (441)
++|+..|++++++ .. . ...++.+||.+|..+|+|++|+.+|++++.+ .|...
T Consensus 2 ~~a~~~~~~al~~---~p-----~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 53 (115)
T 2kat_A 2 QAITERLEAMLAQ---GT-----D------------NMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYS 53 (115)
T ss_dssp CCHHHHHHHHHTT---TC-----C------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred hHHHHHHHHHHHh---CC-----C------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcH
Confidence 3678888888876 11 1 1246789999999999999999999999986 35556
Q ss_pred HHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 323 VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 323 ~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
.++.+||.+|..+|++++| ...|++++++..
T Consensus 54 ~~~~~la~~~~~~g~~~~A------~~~~~~al~~~~ 84 (115)
T 2kat_A 54 VAWKWLGKTLQGQGDRAGA------RQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH------HHHHHHHHHhcc
Confidence 7889999999999999987 899999999863
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.54 E-value=2e-07 Score=83.56 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=68.9
Q ss_pred HHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHH
Q 013549 237 HATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG----------DAEEILTRT 306 (441)
Q Consensus 237 ~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~----------eAe~l~~rA 306 (441)
...+.|++|...|++|+++ .- . ...+++|+|.++..+|+|+ +|+..|++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l---~P---------------~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~A 72 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS---NP---------------L--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CT---------------T--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH---CC---------------C--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHH
Confidence 3568899999999999998 11 1 1346899999999999875 666666666
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHhh-----------chhhhhhhHHHHHHHHHHHHHh
Q 013549 307 LTKTEELFGSHHPKVGVVLTCLALMFRNKA-----------MQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 307 L~i~e~~lG~~HP~va~~l~nLa~ly~~qG-----------~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
|.| .|+...+++|||.+|..+| ++++| ...|+|||+|-
T Consensus 73 L~l--------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA------~~~~~kAl~l~ 121 (158)
T 1zu2_A 73 LLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA------TQFFQQAVDEQ 121 (158)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHHHHHHC
T ss_pred HHh--------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHH------HHHHHHHHHhC
Confidence 665 3566678999999999986 67765 89999999983
No 195
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.43 E-value=9.7e-06 Score=80.25 Aligned_cols=176 Identities=16% Similarity=0.123 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---
Q 013549 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC--- 224 (441)
Q Consensus 148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~--- 224 (441)
++..++.++...|++++|..++.+.+.. .+ . ... ..+.++...+++.+||++.|.+.+++.....+.
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~----~~-~---~~~--lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~ 171 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDN----DE-A---EGT--TELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS 171 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS----SC-S---TTH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc----CC-C---cCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc
Confidence 4456788899999999999888776411 11 0 011 223345667788999999999999998775431
Q ss_pred -chHHHHHHHH--HHHHcc--ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549 225 -TGSAALSYGE--YLHATR--NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 299 (441)
Q Consensus 225 -~~~~a~~~a~--~~~~qG--~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA 299 (441)
...+...+++ +...+| ++.+|..+|++..+- . +.+. ....+.| ++..+|+|++|
T Consensus 172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-----~----p~~~---------~~~lLln---~~~~~g~~~eA 230 (310)
T 3mv2_B 172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-----F----PTWK---------TQLGLLN---LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-----S----CSHH---------HHHHHHH---HHHHHTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-----C----CCcc---------cHHHHHH---HHHHcCCHHHH
Confidence 1233444543 344555 999999999995432 1 0000 1122334 89999999999
Q ss_pred HHHHHHHHHHHH-----HhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549 300 EEILTRTLTKTE-----ELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 369 (441)
Q Consensus 300 e~l~~rAL~i~e-----~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~ 369 (441)
+..+++.+..+= +...++|| .++.|+..++..+|+ +| +.+++++.+. .|+||-+.
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~---~~LaN~i~l~~~lgk--~a------~~l~~qL~~~----~P~hp~i~ 290 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKP---TFLANQITLALMQGL--DT------EDLTNQLVKL----DHEHAFIK 290 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHH---HHHHHHHHHHHHTTC--TT------HHHHHHHHHT----TCCCHHHH
T ss_pred HHHHHHHHHhcccccccccCCCCCH---HHHHHHHHHHHHhCh--HH------HHHHHHHHHh----CCCChHHH
Confidence 999997777642 22345555 557777788888887 44 7788877544 58888654
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.31 E-value=1.9e-06 Score=69.59 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 281 AATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 281 ~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
.++.+||.+|..+|+|++|++.|++++.+ .|....++.+||.+|..+|++++| ...|++++++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A------~~~~~~al~l~~ 72 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDA------IDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhhhh
Confidence 46789999999999999999999999986 344455899999999999999987 899999999864
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.27 E-value=7.3e-06 Score=66.00 Aligned_cols=61 Identities=21% Similarity=0.129 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549 196 AVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVL 256 (441)
Q Consensus 196 al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~ 256 (441)
...|.++..+|+|++|+..|++++...+....+...+|.+|..+|++++|+..|++++++.
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3468888999999999999999999777677788899999999999999999999999994
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.24 E-value=7.1e-06 Score=64.81 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=55.4
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA-ATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~-al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
...|..+..+|+|++|+..|++++++ ... ... ++.++|.+|..+|+|++|++.|++++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~---~p~-----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT---EPV-----------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---CSS-----------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCC-----------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677888999999999999999987 111 124 678999999999999999999999997
Q ss_pred HHHHhhCCCCchHH
Q 013549 309 KTEELFGSHHPKVG 322 (441)
Q Consensus 309 i~e~~lG~~HP~va 322 (441)
+ .|+++.+-
T Consensus 64 ~-----~p~~~~~~ 72 (99)
T 2kc7_A 64 L-----NPDSPALQ 72 (99)
T ss_dssp H-----CTTSTHHH
T ss_pred c-----CCCcHHHH
Confidence 6 56666543
No 199
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.19 E-value=0.00012 Score=73.44 Aligned_cols=242 Identities=10% Similarity=-0.045 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh
Q 013549 59 NPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESG-NYVEAIEKLQKVENF 137 (441)
Q Consensus 59 ~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG-~y~eA~e~~~ral~i 137 (441)
|+-...|....... + +.+...+|+.+++++|.+- |.-.++.+..+.++...| .++++++.+.+++.+
T Consensus 51 ~~y~~~~~~~r~~~-~---~~e~se~AL~lt~~~L~~n--------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~ 118 (349)
T 3q7a_A 51 EEYKDAMDYFRAIA-A---KEEKSERALELTEIIVRMN--------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ 118 (349)
T ss_dssp HHHHHHHHHHHHHH-H---TTCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-H---hCCCCHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34444454444443 2 3456679999999999754 445678999999999999 599999999999888
Q ss_pred hhhhhhhhHHHHHHHHHHHHhc-C-CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHH------
Q 013549 138 KNSILGVRVAAMEALAGLYLQL-G-QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLE------ 209 (441)
Q Consensus 138 ~~~~lg~~~~al~~La~l~~~~-G-~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~------ 209 (441)
.+... .+++....+...+ + +++++..+++++++ .++.+......| +.+....|+++
T Consensus 119 nPKny----~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~-------~dpkNy~AW~~R-----~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 119 NLKSY----QVWHHRLLLLDRISPQDPVSEIEYIHGSLL-------PDPKNYHTWAYL-----HWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp TCCCH----HHHHHHHHHHHHHCCSCCHHHHHHHHHHTS-------SCTTCHHHHHHH-----HHHHHHHHHTTCCCHHH
T ss_pred CCCcH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHH-------hCCCCHHHHHHH-----HHHHHHhccccccchhh
Confidence 76643 3677777777776 6 77777766666642 222222333333 33334455666
Q ss_pred --HHHHHHHhhhhccCCchHHHHHHHHHHHHccC-------hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHH
Q 013549 210 --SAESFFKGLQEEEGCTGSAALSYGEYLHATRN-------FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL 280 (441)
Q Consensus 210 --eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~-------y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~ 280 (441)
++..++++++..++....+-...+.++...|+ ++++.+++.++|.+ .- . .-
T Consensus 183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P--------~---------n~ 242 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IP--------H---------NV 242 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CT--------T---------CH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CC--------C---------CH
Confidence 89999999999776666666777778888887 78999999999987 11 1 12
Q ss_pred HHHHHHHHHHHHcCCHHH-------------HHHHHHHHHHHHHHhhCCCC-----chHHHHHHHHHHHHHHhhchhhhh
Q 013549 281 AATFALGQLEAHMGNFGD-------------AEEILTRTLTKTEELFGSHH-----PKVGVVLTCLALMFRNKAMQEHSS 342 (441)
Q Consensus 281 ~al~nLg~ly~~qG~y~e-------------Ae~l~~rAL~i~e~~lG~~H-----P~va~~l~nLa~ly~~qG~~eeA~ 342 (441)
.+-+.+..++...|+-.. =.+.+....+..++.++..+ +..--.+.-||.+|..+|+.++|
T Consensus 243 SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a- 321 (349)
T 3q7a_A 243 SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDA- 321 (349)
T ss_dssp HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHH-
T ss_pred HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHH-
Confidence 356788888888776410 01112223333333333331 34455788899999999987765
Q ss_pred hhHHHHHHHHHH
Q 013549 343 ALLIQEGLYRRA 354 (441)
Q Consensus 343 ~~~~Ae~ly~rA 354 (441)
..+|...
T Consensus 322 -----~~~~~~l 328 (349)
T 3q7a_A 322 -----AKVFEKL 328 (349)
T ss_dssp -----HHHHHHH
T ss_pred -----HHHHHHH
Confidence 5555553
No 200
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.14 E-value=0.00011 Score=80.18 Aligned_cols=234 Identities=9% Similarity=-0.004 Sum_probs=159.8
Q ss_pred HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q 013549 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAI-EKLQKVENFKNSILGVRVAAMEALAGLYLQLG 160 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~-e~~~ral~i~~~~lg~~~~al~~La~l~~~~G 160 (441)
..+...+|++||.. .|.........+..+..+|+.++|. ..|++++..++... ..+...+.+....|
T Consensus 325 ~~Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~----~Lwl~~a~~ee~~~ 392 (679)
T 4e6h_A 325 KARMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA----VLAFSLSEQYELNT 392 (679)
T ss_dssp HHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhC
Confidence 56678899999974 3445677888899999999999997 99999988776532 24556777888899
Q ss_pred CcchhHHHHHHHHHHHHhc-------CCCcchhhhhh---HhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCchHHH
Q 013549 161 QDDTSSVVADKCLQLCEKH-------KPENYKTYGAV---NSRANAVKGLVELAHGNLESAESFFKGLQEE-EGCTGSAA 229 (441)
Q Consensus 161 ~~~~A~~l~~~~L~i~~~~-------~~~~~~~~~~l---~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~-~~~~~~~a 229 (441)
+.+.|..++++++...... .+........+ ..............+|+.+.|..+|.+|+.. ..+...+.
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 9999999999998764211 11000000000 0000111112233578999999999999985 44444555
Q ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013549 230 LSYGEYLHAT-RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLT 308 (441)
Q Consensus 230 ~~~a~~~~~q-G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~ 308 (441)
...+.+.... ++++.|..+|+++|..+ .. . + ......+.....+|+.+.|..+|++|+.
T Consensus 473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~~---p~-----~-------~-----~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 473 LENAYIEYHISKDTKTACKVLELGLKYF---AT-----D-------G-----EYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH---TT-----C-------H-----HHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHC---CC-----c-------h-----HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5566665554 45999999999999873 11 0 1 1235667778889999999999999986
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 309 KTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 309 i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
... +-.............-...|..+.+ ..+++|+++..
T Consensus 533 ~~~-----~~~~~~~lw~~~~~fE~~~G~~~~~------~~v~~R~~~~~ 571 (679)
T 4e6h_A 533 KIS-----DSHLLKMIFQKVIFFESKVGSLNSV------RTLEKRFFEKF 571 (679)
T ss_dssp TSS-----STTHHHHHHHHHHHHHHHTCCSHHH------HHHHHHHHHHS
T ss_pred hcC-----CHHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHhC
Confidence 432 1113445666666777777887765 78888887765
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.11 E-value=2.3e-05 Score=67.32 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=74.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 013549 198 KGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA----TRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNM 273 (441)
Q Consensus 198 ~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~----qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~ 273 (441)
+|.+|...+.+++|..+|+++.+.. ++.+..++|.+|.. .+++++|..+|++|.+. +
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g------------ 91 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----N------------ 91 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----C------------
Confidence 5777777788999999999999852 45678899999988 89999999999999865 2
Q ss_pred chhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 013549 274 ALEEVALAATFALGQLEAH----MGNFGDAEEILTRTLTK 309 (441)
Q Consensus 274 ~~~~~~~~al~nLg~ly~~----qG~y~eAe~l~~rAL~i 309 (441)
...++++||.+|.. .+++++|.++|++|.+.
T Consensus 92 -----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 92 -----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 12468999999999 99999999999999874
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=4.1e-05 Score=81.61 Aligned_cols=176 Identities=11% Similarity=-0.023 Sum_probs=135.2
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhhhhhhhhhHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN----------YVEAIEKLQKVENFKNSILGVRVAA 148 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~----------y~eA~e~~~ral~i~~~~lg~~~~a 148 (441)
....+||+.++++++.+ .|...++.++.+.++...|+ |++|++.+.+++.+.+..- .+
T Consensus 42 ~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y----~a 109 (567)
T 1dce_A 42 GELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GT 109 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HH
T ss_pred CCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH----HH
Confidence 33456899999999974 45567789999999999999 9999999999988776542 47
Q ss_pred HHHHHHHHHhcC--CcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcC-CHHHHHHHHHhhhhccCCc
Q 013549 149 MEALAGLYLQLG--QDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHG-NLESAESFFKGLQEEEGCT 225 (441)
Q Consensus 149 l~~La~l~~~~G--~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG-~y~eAe~l~~~aL~~~~~~ 225 (441)
|+..+.+...+| ++.++..++++++++-.+. ..+. ...+.+....| +++++..++.+++..++..
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW-----~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n 177 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCW-----DYRRFVAAQAAVAPAEELAFTDSLITRNFSN 177 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHH-----HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHCCCC
Confidence 888889999999 4588999888887543221 1222 23455556778 8999999999999977767
Q ss_pred hHHHHHHHHHHHHc--------------cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 013549 226 GSAALSYGEYLHAT--------------RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEA 291 (441)
Q Consensus 226 ~~~a~~~a~~~~~q--------------G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~ 291 (441)
..+....+.++... ++|++|.++|.+|+.+ . +.. -.+.+.++.++.
T Consensus 178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~---~-----P~~------------~saW~y~~~ll~ 237 (567)
T 1dce_A 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---D-----PND------------QSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH---C-----SSC------------SHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh---C-----CCC------------ccHHHHHHHHHh
Confidence 66767777777664 7789999999999988 1 111 135788999999
Q ss_pred HcCCHHH
Q 013549 292 HMGNFGD 298 (441)
Q Consensus 292 ~qG~y~e 298 (441)
..|++++
T Consensus 238 ~~~~~~~ 244 (567)
T 1dce_A 238 RAEPHDV 244 (567)
T ss_dssp CCCCCSC
T ss_pred cCCCccc
Confidence 9999776
No 203
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.08 E-value=0.00042 Score=69.60 Aligned_cols=189 Identities=8% Similarity=-0.036 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhcCCCcc
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ-DDTSSVVADKCLQLCEKHKPENY 184 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~-~~~A~~l~~~~L~i~~~~~~~~~ 184 (441)
....+++.+..++...+...+|++++.+++.+.+... .+++....+...+|. +.++..++++++.+ .+
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y----taWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nP--- 120 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHY----TVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NL--- 120 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TC---
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CC---
Confidence 3445555555555566777899999999999887653 367777777778884 78888888777622 22
Q ss_pred hhhhhhHhHHHHHHHHHHHHc-C-CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChH--------HHHHHHHHHHH
Q 013549 185 KTYGAVNSRANAVKGLVELAH-G-NLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFL--------LAKKFYQKVIE 254 (441)
Q Consensus 185 ~~~~~l~~~a~al~gl~~~~q-G-~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~--------eA~~ly~rAL~ 254 (441)
........| +.+.... + +++++..++.+++..++....+-..-+.++...|+++ ++.+++.++|+
T Consensus 121 Kny~aW~hR-----~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 121 KSYQVWHHR-----LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp CCHHHHHHH-----HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHH-----HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 122333333 3333333 7 8999999999999966666566666677778888888 99999999998
Q ss_pred HHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 013549 255 VLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGN-------FGDAEEILTRTLTKTEELFGSHHPKVGVVLTC 327 (441)
Q Consensus 255 i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~-------y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~n 327 (441)
+ .-. ...+.++.+.++...|+ ++++.+++.+++.+ +|.=.+..++
T Consensus 196 ~---dp~-----------------N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Y 247 (349)
T 3q7a_A 196 V---DGR-----------------NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNY 247 (349)
T ss_dssp H---CTT-----------------CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred h---CCC-----------------CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 7 111 12467899999999998 45555555555543 6777788888
Q ss_pred HHHHHHHhhch
Q 013549 328 LALMFRNKAMQ 338 (441)
Q Consensus 328 La~ly~~qG~~ 338 (441)
+..++..-|+.
T Consensus 248 lr~Ll~~~~~~ 258 (349)
T 3q7a_A 248 LRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHhcCCC
Confidence 88999887764
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.08 E-value=4.7e-05 Score=62.23 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
-.+.+|..+..+|+|.+|+.+|++|+...... +..+. .....+.+||.+|..+|++++|..++++|+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~------~~~~~-------~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEG------EISTI-------DKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------CCCSS-------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhcc------CCCcc-------cHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34678999999999999999999999885211 11121 123467899999999999999999999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHH
Q 013549 308 TKTEELFGSHHPKVGVVLTCLA 329 (441)
Q Consensus 308 ~i~e~~lG~~HP~va~~l~nLa 329 (441)
.+ .|+|+.+ ++|++
T Consensus 74 ~l-----~P~~~~~---~~n~~ 87 (104)
T 2v5f_A 74 EL-----DPEHQRA---NGNLK 87 (104)
T ss_dssp HH-----CTTCHHH---HHHHH
T ss_pred hc-----CCCCHHH---HhhHH
Confidence 74 7788665 66666
No 205
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.00047 Score=68.75 Aligned_cols=152 Identities=10% Similarity=-0.022 Sum_probs=110.8
Q ss_pred hhHH-HHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhhhhhhhhhHHH
Q 013549 80 ESYS-QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN----------YVEAIEKLQKVENFKNSILGVRVAA 148 (441)
Q Consensus 80 g~y~-eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~----------y~eA~e~~~ral~i~~~~lg~~~~a 148 (441)
|.|+ +|+.+++++|.+ .|...++.+.-+.++...|+ |.+++..+..++...+... .+
T Consensus 43 ~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny----~a 110 (331)
T 3dss_A 43 GELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GT 110 (331)
T ss_dssp TCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HH
T ss_pred CCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH----HH
Confidence 4554 899999999964 34556778888888877776 6788888888877766542 37
Q ss_pred HHHHHHHHHhcCC--cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCc
Q 013549 149 MEALAGLYLQLGQ--DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGN-LESAESFFKGLQEEEGCT 225 (441)
Q Consensus 149 l~~La~l~~~~G~--~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~-y~eAe~l~~~aL~~~~~~ 225 (441)
++....+...+|+ +.++..++++++++-.+ +.... ...+.+....|+ ++++..++.+++..++..
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-------Ny~AW-----~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADER-------NFHCW-----DYRRFVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-------CHHHH-----HHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-------CHHHH-----HHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 7888888888885 67788888777643211 11222 233555556788 699999999999977767
Q ss_pred hHHHHHHHHHHHHc--------------cChHHHHHHHHHHHHH
Q 013549 226 GSAALSYGEYLHAT--------------RNFLLAKKFYQKVIEV 255 (441)
Q Consensus 226 ~~~a~~~a~~~~~q--------------G~y~eA~~ly~rAL~i 255 (441)
..+-...+.++... +.++++.+++.++|.+
T Consensus 179 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 179 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 66666667666655 6799999999999988
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=4.7e-05 Score=81.17 Aligned_cols=178 Identities=9% Similarity=0.043 Sum_probs=129.1
Q ss_pred HHcCCh-HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC----------cchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 119 YESGNY-VEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ----------DDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 119 ~~qG~y-~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~----------~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
...|+| ++|++.+.+++.+.+... .+|+....+...+|+ +.++..++++++.+- + ...
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~----taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~----p---K~y 107 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN----P---KSY 107 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC----T---TCH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC----C---CCH
Confidence 345655 577999999998887653 367777777777777 677777777775322 1 112
Q ss_pred hhhHhHHHHHHHHHHHHcC--CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHhhcccCC
Q 013549 188 GAVNSRANAVKGLVELAHG--NLESAESFFKGLQEEEGCTGSAALSYGEYLHATR-NFLLAKKFYQKVIEVLAEQKDFSD 264 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~~qG--~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG-~y~eA~~ly~rAL~i~~~~~~~~~ 264 (441)
.... ..+.+....| +|++|..++.++++.++....+...-+.++...| ++++|.+++.++|++ .
T Consensus 108 ~aW~-----hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~----- 174 (567)
T 1dce_A 108 GTWH-----HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---N----- 174 (567)
T ss_dssp HHHH-----HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---T-----
T ss_pred HHHH-----HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---C-----
Confidence 2333 3355556778 6799999999999976666666666678888899 999999999999876 1
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 013549 265 MNTLGSCNMALEEVALAATFALGQLEAHM--------------GNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLAL 330 (441)
Q Consensus 265 ~~~lg~~~~~~~~~~~~al~nLg~ly~~q--------------G~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ 330 (441)
+. ...+.++.+.++..+ ++|++|.+++.+|+.+ . |.-..+.+.++.
T Consensus 175 ---p~---------n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-----~---P~~~saW~y~~~ 234 (567)
T 1dce_A 175 ---FS---------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----D---PNDQSAWFYHRW 234 (567)
T ss_dssp ---CC---------CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-----C---SSCSHHHHHHHH
T ss_pred ---CC---------CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-----C---CCCccHHHHHHH
Confidence 11 124678899988886 6678888888888875 3 444567888889
Q ss_pred HHHHhhchhh
Q 013549 331 MFRNKAMQEH 340 (441)
Q Consensus 331 ly~~qG~~ee 340 (441)
++...+++++
T Consensus 235 ll~~~~~~~~ 244 (567)
T 1dce_A 235 LLGRAEPHDV 244 (567)
T ss_dssp HHSCCCCCSC
T ss_pred HHhcCCCccc
Confidence 9999988766
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.94 E-value=3e-05 Score=61.13 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHH-HHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGV-VLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~-~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
.++|..+..+|+|++|++.|++++.+ +|.... .+.++|.+|..+|++++| ...|++++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A------~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKA------LNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhc
Confidence 57899999999999999999999986 455556 899999999999999987 8999999987
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.85 E-value=0.00025 Score=69.38 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhhhccCC--chHHHHHHHHHHHHc-----cChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHH
Q 013549 208 LESAESFFKGLQEEEGC--TGSAALSYGEYLHAT-----RNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVAL 280 (441)
Q Consensus 208 y~eAe~l~~~aL~~~~~--~~~~a~~~a~~~~~q-----G~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~ 280 (441)
..+|..+++|+++..+. .+.+...+|.+|... |+.++|+.+|+|||+| ..+ . .+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~-----~-----------~i 239 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSA-----H-----------DP 239 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCT-----T-----------CS
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCC-----C-----------Cc
Confidence 58899999999996555 355677889888884 9999999999999999 221 1 02
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 013549 281 AATFALGQLEAH-MGNFGDAEEILTRTLTK 309 (441)
Q Consensus 281 ~al~nLg~ly~~-qG~y~eAe~l~~rAL~i 309 (441)
.+...+|..|+. +|++++|+.++++||.+
T Consensus 240 d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 240 DHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 345788998888 59999999999999984
No 209
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.82 E-value=0.00034 Score=76.17 Aligned_cols=206 Identities=11% Similarity=0.020 Sum_probs=139.8
Q ss_pred ChhhHHHHH-HHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh------h------
Q 013549 78 SDESYSQGM-LVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG------V------ 144 (441)
Q Consensus 78 ~~g~y~eAl-~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg------~------ 144 (441)
..|+.++|. .+|++|+..- |.........+.+....|++++|.++|++++........ +
T Consensus 355 ~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 456677897 9999998633 222355678899999999999999999999875321110 0
Q ss_pred ------hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHc-CCHHHHHHHHHh
Q 013549 145 ------RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAH-GNLESAESFFKG 217 (441)
Q Consensus 145 ------~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~q-G~y~eAe~l~~~ 217 (441)
....+-..+.+....|..+.|..++.++++...... + .+ .. -.+...... ++++.|..+|++
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~---~----~l--yi--~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT---P----DI--YL--ENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC---T----HH--HH--HHHHHHHTTTSCCHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC---h----HH--HH--HHHHHHHHhCCCHHHHHHHHHH
Confidence 012455556666677888888888888864311111 1 11 11 123334444 559999999999
Q ss_pred hhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHH
Q 013549 218 LQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG 297 (441)
Q Consensus 218 aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~ 297 (441)
+++..+..+.....|+.+....|+.+.|..+|+||+... .. ++. ...........-...|+.+
T Consensus 496 ~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~---~~-------------~~~-~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 496 GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI---SD-------------SHL-LKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS---SS-------------TTH-HHHHHHHHHHHHHHTCCSH
T ss_pred HHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc---CC-------------HHH-HHHHHHHHHHHHHHcCCHH
Confidence 999655566677889999999999999999999999751 10 000 1123456677778889999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCchHHHH
Q 013549 298 DAEEILTRTLTKTEELFGSHHPKVGVV 324 (441)
Q Consensus 298 eAe~l~~rAL~i~e~~lG~~HP~va~~ 324 (441)
.+..+++|++..+ |+.|.+...
T Consensus 559 ~~~~v~~R~~~~~-----P~~~~~~~f 580 (679)
T 4e6h_A 559 SVRTLEKRFFEKF-----PEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHHHHS-----TTCCHHHHH
T ss_pred HHHHHHHHHHHhC-----CCCcHHHHH
Confidence 9999999998766 345655544
No 210
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.74 E-value=0.0023 Score=63.75 Aligned_cols=156 Identities=10% Similarity=0.029 Sum_probs=102.5
Q ss_pred HHHcCChH-HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC----------cchhHHHHHHHHHHHHhcCCCcchh
Q 013549 118 LYESGNYV-EAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ----------DDTSSVVADKCLQLCEKHKPENYKT 186 (441)
Q Consensus 118 ~~~qG~y~-eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~----------~~~A~~l~~~~L~i~~~~~~~~~~~ 186 (441)
....|.|+ +|+.++.+++.+.+... .+++.-..+...++. +.++..+++.++.+ . +..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~y----taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----~---PKn 107 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----N---PKS 107 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----C---TTC
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh----C---CCC
Confidence 34678887 79999999998887653 245554444443343 23444444444321 1 222
Q ss_pred hhhhHhHHHHHHHHHHHHcC--CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHHhhcccC
Q 013549 187 YGAVNSRANAVKGLVELAHG--NLESAESFFKGLQEEEGCTGSAALSYGEYLHATRN-FLLAKKFYQKVIEVLAEQKDFS 263 (441)
Q Consensus 187 ~~~l~~~a~al~gl~~~~qG--~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~-y~eA~~ly~rAL~i~~~~~~~~ 263 (441)
......| +.+....| .++++..++.+++..++....+-..-+.++...|+ ++++.+++.++|++ .
T Consensus 108 y~aW~hR-----~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~---- 175 (331)
T 3dss_A 108 YGTWHHR-----CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---N---- 175 (331)
T ss_dssp HHHHHHH-----HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---C----
T ss_pred HHHHHHH-----HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---C----
Confidence 2333333 44444566 49999999999999766666666666778888898 59999999999987 1
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHH
Q 013549 264 DMNTLGSCNMALEEVALAATFALGQLEAHM--------------GNFGDAEEILTRTLTK 309 (441)
Q Consensus 264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~q--------------G~y~eAe~l~~rAL~i 309 (441)
+. ...+.++.+.++... +.|+++.+++.+++.+
T Consensus 176 ----p~---------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 176 ----FS---------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp ----SC---------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred ----CC---------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 11 124678888888877 4567777777777654
No 211
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.73 E-value=0.0013 Score=69.04 Aligned_cols=191 Identities=10% Similarity=-0.023 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchh--HHHHHHHHHHHH---hcCCCcc
Q 013549 110 SLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTS--SVVADKCLQLCE---KHKPENY 184 (441)
Q Consensus 110 ~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A--~~l~~~~L~i~~---~~~~~~~ 184 (441)
+++++=..+.+.|++++|+++|++.... .+.+++.+++.|...|...+...++ ..-.+++.+++. ..+ ..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~---Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G-~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN---GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK-VVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH---TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-CCC
Confidence 4566667788999999999999987542 2334566888888888665543221 111233333322 222 111
Q ss_pred hhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC
Q 013549 185 KTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-EEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS 263 (441)
Q Consensus 185 ~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~ 263 (441)
+...+ +..-.++...|++++|..+|++... +-.+...+...+-..|...|++++|..+|++-.+- +
T Consensus 104 ----d~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----G-- 170 (501)
T 4g26_A 104 ----NEATF--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-----E-- 170 (501)
T ss_dssp ----CHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----T--
T ss_pred ----CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-----C--
Confidence 11111 1122345689999999999999887 32333334455556778999999999999986532 2
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhh
Q 013549 264 DMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKA 336 (441)
Q Consensus 264 ~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG 336 (441)
+. |+ ..+++.|=..|...|++++|.+++++-- +...- |+. .+++.|-..|...+
T Consensus 171 ----~~-----Pd---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr---~~g~~---ps~-~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 171 ----VV-----PE---EPELAALLKVSMDTKNADKVYKTLQRLR---DLVRQ---VSK-STFDMIEEWFKSEV 224 (501)
T ss_dssp ----CC-----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHTSS---BCH-HHHHHHHHHHHSHH
T ss_pred ----CC-----CC---HHHHHHHHHHHhhCCCHHHHHHHHHHHH---HhCCC---cCH-HHHHHHHHHHhcCc
Confidence 11 22 3467888889999999999999998853 32222 332 33444545555443
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.66 E-value=0.00021 Score=58.30 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCC
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPP 362 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~ 362 (441)
.+.||..+..+|+|++|...|++|+.....--. .-+....++.+||.+|..+|++++| ..+|++++++ .
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A------~~~~~~al~l----~ 76 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKA------LLLTKKLLEL----D 76 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH----C
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHH------HHHHHHHHhc----C
Confidence 469999999999999999999999988753311 1134567889999999999999887 8899999886 3
Q ss_pred CCCcchHhhhccHH
Q 013549 363 LESEGVETKVDRTD 376 (441)
Q Consensus 363 ~~~~~~~~~l~nl~ 376 (441)
|+|+.+ ++|+.
T Consensus 77 P~~~~~---~~n~~ 87 (104)
T 2v5f_A 77 PEHQRA---NGNLK 87 (104)
T ss_dssp TTCHHH---HHHHH
T ss_pred CCCHHH---HhhHH
Confidence 566543 45544
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.49 E-value=0.0011 Score=53.29 Aligned_cols=84 Identities=8% Similarity=-0.026 Sum_probs=59.6
Q ss_pred CCchHHHHHHHHHHHHccC---hHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHH
Q 013549 223 GCTGSAALSYGEYLHATRN---FLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDA 299 (441)
Q Consensus 223 ~~~~~~a~~~a~~~~~qG~---y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eA 299 (441)
+..+.+...+|.++...++ .++|..++++||++ . |. .+.++..||.++..+|+|++|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---d---------------p~--~~rA~~~lg~~~~~~g~y~~A 62 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---E---------------PY--NEAALSLIANDHFISFRFQEA 62 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---C---------------TT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---C---------------cC--CHHHHHHHHHHHHHcCCHHHH
Confidence 4455667778887765554 78999999999988 1 11 135678899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 013549 300 EEILTRTLTKTEELFGSHHPKVGVVLTCLALM 331 (441)
Q Consensus 300 e~l~~rAL~i~e~~lG~~HP~va~~l~nLa~l 331 (441)
..+|+++|+. .++.|.....-..++..
T Consensus 63 i~~w~~~l~~-----~p~~~~~~~i~~~I~~A 89 (93)
T 3bee_A 63 IDTWVLLLDS-----NDPNLDRVTIIESINKA 89 (93)
T ss_dssp HHHHHHHHTC-----CCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhh-----CCCCccHHHHHHHHHHH
Confidence 9999988763 33356665555555443
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.38 E-value=0.0032 Score=65.91 Aligned_cols=156 Identities=9% Similarity=-0.048 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHhhhhhhhhhHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGN---------YVEAIEKLQKVENFKNSILGVRVAAM 149 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~---------y~eA~e~~~ral~i~~~~lg~~~~al 149 (441)
.|+.++|+.+|++..... ..++ ..+++.|=..+...|+ .++|.++|++.... .+.++..++
T Consensus 39 ~G~~~~A~~lf~~M~~~G---v~pd----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---G~~Pd~~ty 108 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNG---VQLS----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---KVVPNEATF 108 (501)
T ss_dssp SCCHHHHHHHHHHHHHHT---CCCC----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---TCCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcC---CCCC----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---CCCCCHHHH
Confidence 589999999999988632 2122 3356666666655444 68888888876432 233456789
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCchHH
Q 013549 150 EALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-EEGCTGSA 228 (441)
Q Consensus 150 ~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~~~~ 228 (441)
+.|...|...|+.++|..++++.. ..+ ..+ +...+ +..-..+...|+.++|..+|++... +-.+...+
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~----~~g-~~P----d~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMK----AFG-IQP----RLRSY--GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH----HTT-CCC----CHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----HcC-CCC----cccee--hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 999999999999999998887653 222 111 11111 1122345689999999999999988 33334445
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
...+-..|...|++++|..++++--+.
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 566677888999999999999986543
No 215
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.34 E-value=0.019 Score=58.38 Aligned_cols=184 Identities=16% Similarity=0.155 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhh
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVR-VAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTY 187 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~-~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~ 187 (441)
.++..||.+|.++|++++-.+++..........-... .....+|...+...... ....++-|++..+-...+ ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~--~~~~~~~~~~~~~~a~~~---~r 94 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAG--TGIEVQLCKDCIEWAKQE---KR 94 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHH---HH
Confidence 4578899999999999999999987654443321111 23445566555433322 122234444333211100 00
Q ss_pred hhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc----cCCc--hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 188 GAVNSRANAVKGLVELAHGNLESAESFFKGLQEE----EGCT--GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 188 ~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~----~~~~--~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
.-+..+...-++-.|+..|+|.+|.+++.+.+.. +... ..+...-..+|+.+|++.++...|.+|..+.- .
T Consensus 95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~---a 171 (394)
T 3txn_A 95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN---A 171 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc---c
Confidence 1111112223566778999999999999999881 1111 12222335689999999999999999999841 1
Q ss_pred cCCCCCccccccchhHHHHHHH-HHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Q 013549 262 FSDMNTLGSCNMALEEVALAAT-FALGQLEA-HMGNFGDAEEILTRTLTKTE 311 (441)
Q Consensus 262 ~~~~~~lg~~~~~~~~~~~~al-~nLg~ly~-~qG~y~eAe~l~~rAL~i~e 311 (441)
.. + +|. ..+.+ ..-|.++. ..++|.+|-.+|-+|+.-|.
T Consensus 172 -----i~--~--~p~--i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 172 -----IY--C--PPK--VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp -----SC--C--CHH--HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred -----CC--C--CHH--HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 00 1 121 22333 45677888 89999999999999986665
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.32 E-value=0.0016 Score=63.73 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHhhhhccCCc-hHHHHHHHHHHHH-ccChHHHHHHHHHHHHH
Q 013549 194 ANAVKGLVELAH-----GNLESAESFFKGLQEEEGCT-GSAALSYGEYLHA-TRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 194 a~al~gl~~~~q-----G~y~eAe~l~~~aL~~~~~~-~~~a~~~a~~~~~-qG~y~eA~~ly~rAL~i 255 (441)
+...+|.+|... |+.++|+.+|+|+|...+.. ..+-..||..+.. +|++++|..++++||.+
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 444568888663 99999999999999955433 5677888998887 59999999999999987
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.01 Score=59.81 Aligned_cols=133 Identities=11% Similarity=0.019 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHhhhhccCCchHHHHHHHHH---HHHcc-ChHHHHHHHHHHHHHHHhhcccCCCCCc
Q 013549 196 AVKGLVELAHGN---LESAESFFKGLQEEEGCTGSAALSYGEY---LHATR-NFLLAKKFYQKVIEVLAEQKDFSDMNTL 268 (441)
Q Consensus 196 al~gl~~~~qG~---y~eAe~l~~~aL~~~~~~~~~a~~~a~~---~~~qG-~y~eA~~ly~rAL~i~~~~~~~~~~~~l 268 (441)
.+.|..++.++. +.+|..+|+++++.+|....+...++.+ ....+ .-.....-..+++........
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~------- 272 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE------- 272 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc-------
Confidence 355666666554 5889999999999666554332222211 22222 222222223344442111111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHH
Q 013549 269 GSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQE 348 (441)
Q Consensus 269 g~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae 348 (441)
+ |. ...++.-+|.++..+|++++|...++||+.+. |+ ...+.-+|.++...|++++| .
T Consensus 273 ~-----~~--~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA------~ 330 (372)
T 3ly7_A 273 L-----NN--LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREA------A 330 (372)
T ss_dssp G-----TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHH------H
T ss_pred C-----Cc--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHH------H
Confidence 1 11 12345677777788899999999999999994 44 45778899999999999987 8
Q ss_pred HHHHHHHHH
Q 013549 349 GLYRRALEF 357 (441)
Q Consensus 349 ~ly~rAL~i 357 (441)
..|.+|+.+
T Consensus 331 e~~~~AlrL 339 (372)
T 3ly7_A 331 DAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999877
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.23 E-value=0.0091 Score=60.26 Aligned_cols=136 Identities=13% Similarity=-0.020 Sum_probs=78.4
Q ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH---hcCCcch-hHHHHHHHHHHHHhcCCCc
Q 013549 109 ISLLAMSTLLY-ESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYL---QLGQDDT-SSVVADKCLQLCEKHKPEN 183 (441)
Q Consensus 109 ~~l~nLa~l~~-~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~---~~G~~~~-A~~l~~~~L~i~~~~~~~~ 183 (441)
..+-.++.++. +...+.+|+++|++|+++.+.. +. ++-.++.+|. ..+.... ...-..+++....... .
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~-a~---A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~-~- 272 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF-TY---ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP-E- 272 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC-HH---HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-G-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-HH---HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc-c-
Confidence 33444443332 2344689999999999988763 11 1111222221 1121111 1111122222111111 0
Q ss_pred chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
.....+.....+++.+.+|++++|...+++++...+. ..+...+|.++...|++++|++.|++|+.+
T Consensus 273 ----~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 ----LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp ----GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 0111222333466667899999999999999996542 333456688999999999999999999998
No 219
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.13 E-value=0.038 Score=57.42 Aligned_cols=225 Identities=11% Similarity=0.009 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCC
Q 013549 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQ 161 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~ 161 (441)
..+...+|+++|... |.........+..+..+|+.++|...|++++.. +...-. +.. |...-+
T Consensus 195 ~~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l----~~~----y~~~~e 257 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFL----SLY----YGLVMD 257 (493)
T ss_dssp HHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHH----HHH----HHHHTT
T ss_pred HHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHH----HHH----HHhhcc
Confidence 456788999999743 233667888899999999999999999999988 654211 111 111111
Q ss_pred cchhHHHHHHHHHHHHhcCCCcch--hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHc
Q 013549 162 DDTSSVVADKCLQLCEKHKPENYK--TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHAT 239 (441)
Q Consensus 162 ~~~A~~l~~~~L~i~~~~~~~~~~--~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~q 239 (441)
.. ..+++..+........... ..... ......-...+..+|+.+.|..+|+++ ...+....+...+|.+-...
T Consensus 258 ~~---~~~~~l~~~~~~~~~~~~~~~~~~~~-~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EE---AVYGDLKRKYSMGEAESAEKVFSKEL-DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CT---HHHHHHHHHTC----------CHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH
T ss_pred hh---HHHHHHHHHHHhhccchhhhhccccc-HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH
Confidence 11 1233322221000000000 00000 000000011122477899999999999 53333444555567666666
Q ss_pred c-ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549 240 R-NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 318 (441)
Q Consensus 240 G-~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H 318 (441)
| +++.|..+|++++..+ .. . |+ .....+.....+|+.+.|..+|+++ ..|
T Consensus 333 ~~d~~~ar~ife~al~~~---~~-----~-------~~-----~~~~yid~e~~~~~~~~aR~l~er~---------~k~ 383 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH---PD-----S-------TL-----LKEEFFLFLLRIGDEENARALFKRL---------EKT 383 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC---TT-----C-------HH-----HHHHHHHHHHHHTCHHHHHHHHHHS---------CCB
T ss_pred CCChHHHHHHHHHHHHHC---CC-----C-------HH-----HHHHHHHHHHHcCCHHHHHHHHHHH---------HHH
Confidence 6 5999999999999862 10 0 11 1234566778899999999999997 234
Q ss_pred chHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 013549 319 PKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESE 366 (441)
Q Consensus 319 P~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~ 366 (441)
.. ........=...|..+.+ ..+|+|+++-++....++|
T Consensus 384 ~~---lw~~~~~fE~~~G~~~~~------r~v~~~~~~~~~~~~~~~~ 422 (493)
T 2uy1_A 384 SR---MWDSMIEYEFMVGSMELF------RELVDQKMDAIKADAILPP 422 (493)
T ss_dssp HH---HHHHHHHHHHHHSCHHHH------HHHHHHHHHHHHTTCCBCC
T ss_pred HH---HHHHHHHHHHHCCCHHHH------HHHHHHHHHHhcccccCCc
Confidence 33 333333455556876654 7889999987763333343
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.09 E-value=0.0025 Score=57.20 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=70.5
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
...+...|.|+-|+.++..++.+-. . ++..+. | +....++..+|++++.+|+|.+|+..|++||...+.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~---~--~~~~~s-----p-~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSN---N--NPELFS-----P-PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH---H--STTSSC-----H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhc---C--Cccccc-----H-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999832 1 122333 2 235668899999999999999999999999999985
Q ss_pred hhCCCC-----------------chHHHHHHHHHHHHHHhhchhhh
Q 013549 313 LFGSHH-----------------PKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 313 ~lG~~H-----------------P~va~~l~nLa~ly~~qG~~eeA 341 (441)
+.-..- +.-...-..+|..|..++++++|
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 431111 11224556788899888886654
No 221
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.99 E-value=0.1 Score=53.09 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHH---HcCCHHHHHHHHHhhhh---c
Q 013549 148 AMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVEL---AHGNLESAESFFKGLQE---E 221 (441)
Q Consensus 148 al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~---~qG~y~eAe~l~~~aL~---~ 221 (441)
+...|+.+|..+|++++-..+.......+..-. -...++.+..++.. .-|..+.=..+...++. .
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ 91 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS---------KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ 91 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---------HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---------hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 567889999999998776655544322221111 11122334444433 24566666777777776 2
Q ss_pred cCCc-hH--HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHH
Q 013549 222 EGCT-GS--AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGD 298 (441)
Q Consensus 222 ~~~~-~~--~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~e 298 (441)
++.. -. +=..++.+|..+|+|.+|..++.+.+.-. +.. +.. ...+..+..-.++|..+|++.+
T Consensus 92 ~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~---~~~-dd~----------~~llev~lle~~~~~~~~n~~k 157 (394)
T 3txn_A 92 EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLREL---KKL-DDK----------NLLVEVQLLESKTYHALSNLPK 157 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTS-SCT----------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hcc-ccc----------hhHHHHHHHHHHHHHHhccHHH
Confidence 2222 12 22478999999999999999999988763 221 111 1123445667889999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCchHHHHHHHH-HHHHH-HhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 299 AEEILTRTLTKTEELFGSHHPKVGVVLTCL-ALMFR-NKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 299 Ae~l~~rAL~i~e~~lG~~HP~va~~l~nL-a~ly~-~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
+..+|++|..+...+ .-||.+-..+... |.++. .+++|.+| -..|-.+++-+
T Consensus 158 ~k~~l~~a~~~~~ai--~~~p~i~a~i~~~~Gi~~l~~~rdyk~A------~~~F~eaf~~f 211 (394)
T 3txn_A 158 ARAALTSARTTANAI--YCPPKVQGALDLQSGILHAADERDFKTA------FSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTSCHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccC--CCCHHHHHHHHHHhhHHHHHhccCHHHH------HHHHHHHHhcc
Confidence 999999999998766 3889876555544 55555 69999987 34444455444
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.94 E-value=0.001 Score=53.51 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
+.+.-+..||..+.... .....++|..+++++|.+ .|.-.+++..+|..++.+|+|++|+..++++++..+
T Consensus 4 ~~~~~~~~~a~al~~~~-~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLH-KQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTT-TTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444555666553211 222378999999999974 445577889999999999999999999999987766
Q ss_pred h
Q 013549 140 S 140 (441)
Q Consensus 140 ~ 140 (441)
.
T Consensus 75 ~ 75 (93)
T 3bee_A 75 P 75 (93)
T ss_dssp T
T ss_pred C
Confidence 5
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.82 E-value=0.0068 Score=53.63 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=70.8
Q ss_pred CHHHHHHHHHhhhhccCCchHHHHHHHHHHHHcc---ChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHH
Q 013549 207 NLESAESFFKGLQEEEGCTGSAALSYGEYLHATR---NFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAAT 283 (441)
Q Consensus 207 ~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG---~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al 283 (441)
....++.-|.+.+...+....+-++||..+.... ++.+++.+++..+.. . . |+. .-.++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~---~-~-------------p~~-~rd~l 74 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK---G-S-------------KEE-QRDYV 74 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---S-C-------------HHH-HHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---C-C-------------ccc-hHHHH
Confidence 3456777787777755566778899998888765 778999999998876 1 0 111 23578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 322 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va 322 (441)
++||..|..+|+|++|..+++++|++. |+|+...
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ie-----P~n~QA~ 108 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQTE-----PQNNQAK 108 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC-----TTCHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC-----CCCHHHH
Confidence 999999999999999999999999974 5555443
No 224
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.5 Score=48.45 Aligned_cols=214 Identities=12% Similarity=0.073 Sum_probs=122.1
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHH-HHHHHHHHHH
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVA-AMEALAGLYL 157 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~-al~~La~l~~ 157 (441)
.|++++|+..+- +|+-. ...+.+-+++.+++..+..++...|+|+...+++.- +.-....+...+. ....+.....
T Consensus 29 ~~~~~~a~e~ll-~lEK~-~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~-Lskkr~qlk~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLL-VLEKK-TRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTL-LSKKHGQLKLSIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHH-HHHHH-HSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHH-HHTTTTTSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHHH-hhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHh
Confidence 467888887652 22222 234578889999999999999999999998876643 2222111111111 1111111111
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCCc-chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCc-----hHHHH
Q 013549 158 QLGQDDTSSVVADKCLQLCEKHKPEN-YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE-EEGCT-----GSAAL 230 (441)
Q Consensus 158 ~~G~~~~A~~l~~~~L~i~~~~~~~~-~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-~~~~~-----~~~a~ 230 (441)
.....+ ......++.+........ +- +..-.+....++-++..+|+|.+|..+++.... ..... ....+
T Consensus 106 ~~~~~d--~~~~~~~i~~l~~vte~kifl--E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l 181 (445)
T 4b4t_P 106 SSKSLD--LNTRISVIETIRVVTENKIFV--EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFIL 181 (445)
T ss_dssp HHCTTH--HHHHHHHHHCCSSSSSCCCCC--CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred cCCchh--HHHHHHHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 111111 111112222221111100 10 000112222345667789999999999999876 21111 11223
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 231 SYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 231 ~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
--..+|...++|.+|..++.++..-... . . . +....+....-.|.++.+.++|.+|-.+|..++..+
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~--~---~---~-----~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFK--N---P---K-----YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHH--S---S---C-----CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcc--c---C---C-----cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 3366888999999999999998654211 1 0 0 122344455678999999999999999999998865
Q ss_pred HH
Q 013549 311 EE 312 (441)
Q Consensus 311 e~ 312 (441)
..
T Consensus 249 ~~ 250 (445)
T 4b4t_P 249 AI 250 (445)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.24 E-value=0.011 Score=52.34 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCch-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~-~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
......+||..+.++. +.+.+++|+.+++..+... .| ..-.++.+||..|+..|+|++|..++++++++.+
T Consensus 31 ~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4456678888886653 6678899999999999732 34 5678999999999999999999999999988887
Q ss_pred hh
Q 013549 140 SI 141 (441)
Q Consensus 140 ~~ 141 (441)
..
T Consensus 103 ~n 104 (152)
T 1pc2_A 103 QN 104 (152)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.86 E-value=0.075 Score=56.98 Aligned_cols=117 Identities=19% Similarity=0.140 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKT-----EELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~-----e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
-.+||..+..+|+++.|+.+|.++-+.. ....| .++ -+..++.+...+|+++.|..+....+.+++|+++
T Consensus 684 W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~--~~~---~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 684 WRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN--NKE---GLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT--CHH---HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC--CHH---HHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHH
Confidence 4699999999999999999999963222 11122 111 2334455555566655541111111222222222
Q ss_pred hhcCCCCCcchHhhhccHHHHHHHhccHHHHHHHhhch--hh--HHHHHHHHHHHHHhccChhHHHHhcccC
Q 013549 358 LKAPPLESEGVETKVDRTDIVALARGGYAEALSVQQNR--KD--EGERMKRWAEAAWRNRRVSLAEALNFSE 425 (441)
Q Consensus 358 ~~~~~~~~~~~~~~l~nl~~~~~~~g~yaeal~~~~~r--~~--eae~~~~~a~~~~~~~r~~~~~~l~~~~ 425 (441)
|...+++++|+.+-..- .. ..+-+.+|+..+-..++...+++|..-|
T Consensus 759 ---------------------~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l~~~~ 809 (814)
T 3mkq_A 759 ---------------------LIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSERVCGAE 809 (814)
T ss_dssp ---------------------HHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTTBCCGG
T ss_pred ---------------------HHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHHHhhCCcc
Confidence 33445666665543211 11 2244456887777778877888887443
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.78 E-value=0.41 Score=49.55 Aligned_cols=215 Identities=11% Similarity=0.006 Sum_probs=110.5
Q ss_pred cChhh-HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 013549 77 KSDES-YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGL 155 (441)
Q Consensus 77 ~~~g~-y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l 155 (441)
+.+|. .+.|..+|++++..... |+++.+..+|+|++...++. ..|......
T Consensus 5 ~~~~~~i~~aR~vyer~l~~~P~-----------------------~~~e~~~~iferal~~~ps~-----~LW~~Y~~f 56 (493)
T 2uy1_A 5 EKMGVELSSPSAIMEHARRLYMS-----------------------KDYRSLESLFGRCLKKSYNL-----DLWMLYIEY 56 (493)
T ss_dssp -------CCHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHSTTCCCH-----HHHHHHHHH
T ss_pred HHcCcchHHHHHHHHHHHHHCCC-----------------------CCHHHHHHHHHHHhccCCCH-----HHHHHHHHH
Confidence 45674 88899999999987633 88999999999998765532 244444443
Q ss_pred HHhcCC-cchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-chHHHHHHH
Q 013549 156 YLQLGQ-DDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGC-TGSAALSYG 233 (441)
Q Consensus 156 ~~~~G~-~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~-~~~~a~~~a 233 (441)
....+. .+.....|+.++...+..... ..-...+..-+.. ....+|+.+.+..+|+++|..... ....-..|.
T Consensus 57 ~~~~~~~~~~i~~~fe~al~~vg~d~~s----~~iW~~Yi~f~~~-~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~ 131 (493)
T 2uy1_A 57 VRKVSQKKFKLYEVYEFTLGQFENYWDS----YGLYKEYIEEEGK-IEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFE 131 (493)
T ss_dssp HHHHC----CTHHHHHHHHHHSTTCTTC----HHHHHHHHHHTSS-CSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCCccc----HHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHH
Confidence 334442 344566677776655422210 0111111000000 001367899999999999983211 111111221
Q ss_pred H-------------HHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHc--CC---
Q 013549 234 E-------------YLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHM--GN--- 295 (441)
Q Consensus 234 ~-------------~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~q--G~--- 295 (441)
. +-...+.|..|...|+.+..+... .. +.........-... |-
T Consensus 132 ~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~---------~s----------~~~W~~y~~~E~~~~~~~~~~ 192 (493)
T 2uy1_A 132 NFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG---------WS----------VKNAARLIDLEMENGMKLGGR 192 (493)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------CS----------HHHHHHHHHHHHTCTTCCCHH
T ss_pred HHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh---------cc----------HHHHHHHHHHHhcCCccCcch
Confidence 1 112234556666666666655211 00 01111222221111 11
Q ss_pred --HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 296 --FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 296 --y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
.++...+|++||... +.. .....+.+..+..+|+.++| ...|+||+..
T Consensus 193 ~~~~Rv~~~ye~al~~~-----p~~---~~lW~~ya~~~~~~~~~~~a------r~i~erAi~~ 242 (493)
T 2uy1_A 193 PHESRMHFIHNYILDSF-----YYA---EEVYFFYSEYLIGIGQKEKA------KKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHHHHT-----TTC---HHHHHHHHHHHHHTTCHHHH------HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHHcCCHHHH------HHHHHHHHhC
Confidence 334556666666432 333 44455567788889988876 7899999877
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.76 E-value=0.18 Score=54.03 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhH
Q 013549 112 LAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVN 191 (441)
Q Consensus 112 ~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~ 191 (441)
..+...+...|.+++|++..+.... -..+..+.|+.++|...++ ....
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~---------------~f~~~l~~~~~~~A~~~~~-------~~~~---------- 680 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQ---------------KFELALKVGQLTLARDLLT-------DESA---------- 680 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHH---------------HHHHHHHHTCHHHHHHHHT-------TCCC----------
T ss_pred HHHHHHHHhCCChHHheecCCCcch---------------heehhhhcCCHHHHHHHHH-------hhCc----------
Confidence 7778888999999999876643210 0122345688766655432 1111
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCcccc
Q 013549 192 SRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSC 271 (441)
Q Consensus 192 ~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~ 271 (441)
......++.+++.+|+++.|+.+|.++-+-. .+..+|...|+.+....+ .++... .+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~~----~~~a~~-~~---------- 737 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLE--------SLFLLHSSFNNKEGLVTL----AKDAET-TG---------- 737 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH--------HHHHHHHHTTCHHHHHHH----HHHHHH-TT----------
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChh--------hhHHHHHHcCCHHHHHHH----HHHHHH-cC----------
Confidence 0111234666778999999999999875411 122233445555443222 222111 11
Q ss_pred ccchhHHHHHHHHHHH-HHHHHcCCHHHHHHHHHH------HHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 272 NMALEEVALAATFALG-QLEAHMGNFGDAEEILTR------TLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 272 ~~~~~~~~~~al~nLg-~ly~~qG~y~eAe~l~~r------AL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
.++.| .+|..+|++++|+++|.+ |+.+.++ +|+.+..+...+...+.-...+|+++.|
T Consensus 738 -----------~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~-~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 738 -----------KFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGST-YGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp -----------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -----------chHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 01222 245556677777666654 3333333 5554444667777777766777765433
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.72 E-value=0.19 Score=44.92 Aligned_cols=103 Identities=14% Similarity=-0.013 Sum_probs=73.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAP 361 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~ 361 (441)
+..-..-+.+.|.|+.|+.+...++.+.+.--..--|.. +.++..+|.++..+|+|..| +..|++||.+.+..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA------~~~y~qALq~~k~l 96 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNA------VSKYTMALQQKKAL 96 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHH------HHHHHHHHHHHHHH
Confidence 455566778899999999999999999765222223443 47899999999999998876 99999999998753
Q ss_pred CCCCcch-------------------HhhhccHHHHHHHhccHHHHHHHh
Q 013549 362 PLESEGV-------------------ETKVDRTDIVALARGGYAEALSVQ 392 (441)
Q Consensus 362 ~~~~~~~-------------------~~~l~nl~~~~~~~g~yaeal~~~ 392 (441)
. .++.. ...-..++.++...+++.+|+..-
T Consensus 97 ~-k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 97 S-KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp ---------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred h-cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 2 22110 011125778888888888888764
No 230
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.06 Score=55.03 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcch
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYK 185 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~ 185 (441)
.+..++..+|..|.+.|+|++|.+.|.++...+.. .+..+..+-.+..++...+++..+..+..++-.+...... |
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d--~- 204 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD--W- 204 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC--T-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC--H-
Confidence 35677889999999999999999999998776654 3545556667788888899999999999998766655432 2
Q ss_pred hhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Q 013549 186 TYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEE 221 (441)
Q Consensus 186 ~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~ 221 (441)
....+.+...|++++..++|.+|-.+|..+..+
T Consensus 205 ---~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 205 ---ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp ---HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 233455566788889999999999999998874
No 231
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.14 E-value=1.1 Score=45.44 Aligned_cols=105 Identities=14% Similarity=0.057 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.+...+|..|...|++++|...|.++.+- ... .+ + .+....++-.++...++|..+..++.+|
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~---~~~------~~--~------kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSK---AIS------TG--A------KIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHH---HTC------CC--S------HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCC------hH--H------HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34567888999999999999999997765 221 11 1 2345567777888899999999999998
Q ss_pred HHHHHHhhCCCCchHH-HHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 307 LTKTEELFGSHHPKVG-VVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 307 L~i~e~~lG~~HP~va-~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
..+.++ ..||... ..-..-|.++...++|.+| -.+|..++..
T Consensus 195 ~~~~~~---~~d~~~~~~lk~~~gl~~l~~r~f~~A------a~~f~e~~~t 237 (429)
T 4b4t_R 195 NSMIEK---GGDWERRNRYKTYYGIHCLAVRNFKEA------AKLLVDSLAT 237 (429)
T ss_dssp HHHHTT---CCCTHHHHHHHHHHHHGGGGTSCHHHH------HHHHHHHHHH
T ss_pred HHhhhc---CCCHHHHHHHHHHHHHHHHHhChHHHH------HHHHHHHhcc
Confidence 776654 3556654 3444556667777887776 4455555444
No 232
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=90.68 E-value=2.1 Score=33.78 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=42.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCCchHHHHHHHHHHHH
Q 013549 272 NMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELF-GSHHPKVGVVLTCLALMF 332 (441)
Q Consensus 272 ~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~l-G~~HP~va~~l~nLa~ly 332 (441)
+|.|.......+..-|.-.-..|+|++|..+|.+|++.+...+ ....|..-..+..-..-|
T Consensus 8 ~~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eY 69 (86)
T 4a5x_A 8 HMDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKY 69 (86)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 3445443444566778888899999999999999999999886 455666655555444444
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.22 E-value=1.2 Score=37.86 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCch-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 62 VLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 62 a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~-~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
....-+||..+-++. ....-.+++.+++..+.. +.| ..=.++..||.-+++.|+|++|..+.+..|.+.+.
T Consensus 35 ~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 345567877776553 555677899999887752 224 56778999999999999999999999988887764
Q ss_pred h
Q 013549 141 I 141 (441)
Q Consensus 141 ~ 141 (441)
.
T Consensus 107 n 107 (126)
T 1nzn_A 107 N 107 (126)
T ss_dssp C
T ss_pred C
Confidence 3
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.65 E-value=3.6 Score=41.97 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG--VRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN 183 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg--~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~ 183 (441)
..++.-..|+.+|.++|+|.+|...++....-...... ..+...--...+|...+++..|..+..++........+
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-- 212 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK-- 212 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC--
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC--
Confidence 36888899999999999999999999886422111100 01223334567788999999999988887543333221
Q ss_pred chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 013549 184 YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE 220 (441)
Q Consensus 184 ~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~ 220 (441)
...+...-..+.|.++...++|.+|-.+|..+..
T Consensus 213 ---~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 213 ---YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1234444445678888899999999999999887
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.50 E-value=3 Score=41.69 Aligned_cols=128 Identities=9% Similarity=-0.037 Sum_probs=84.0
Q ss_pred CCCccccCCCchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCc---h-----------hHHHHHHH
Q 013549 48 GNGNRINGLNSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAE---S-----------WRGISLLA 113 (441)
Q Consensus 48 ~~~~~~~g~~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h---~-----------~~a~~l~n 113 (441)
+.|-++..+...-.+..+..+...- +.....|+..+|...+++||..+...+=++- + ....++..
T Consensus 98 ~~GY~l~~~~~~~D~~~f~~l~~~~-~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~ 176 (388)
T 2ff4_A 98 PPGYRLSIPDNTCDLGRFVAEKTAG-VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTA 176 (388)
T ss_dssp SSEEEECCCGGGBHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCccchHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4455554332223344444433331 2111346788999999999999855432222 1 23356667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Q 013549 114 MSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHK 180 (441)
Q Consensus 114 La~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~ 180 (441)
++..+...|++.+|+..+++.+...+- . -..+..|+.++...|+..+|...|+++-+.+....
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~--~--E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL 239 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPY--R--EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 239 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT--C--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 788889999999999999988665432 1 12455677888899999999999999988765554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.95 E-value=1.8 Score=36.77 Aligned_cols=88 Identities=16% Similarity=0.101 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHH---HHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHH
Q 013549 205 HGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLL---AKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALA 281 (441)
Q Consensus 205 qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~e---A~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~ 281 (441)
......++.-|.+.+........+-++||..+-.-.+-.+ ++.+++..+.. . .|+. .-.
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~---------~--------~p~~-~Rd 75 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---------G--------SKEE-QRD 75 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---------S--------CHHH-HHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---------C--------Ccch-HHH
Confidence 3344556677777776444566778888877665544433 44444442221 0 0211 235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
.+..||..+..+|+|++|..+....|.+-
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 78899999999999999999999999873
No 237
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.71 E-value=3.9 Score=46.37 Aligned_cols=109 Identities=13% Similarity=-0.063 Sum_probs=78.2
Q ss_pred CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCC
Q 013549 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKP 181 (441)
Q Consensus 102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~ 181 (441)
..+...-.+++.|=..|+..|+.++|.+++.+...........++.++|.|..-|...|+.++|..++++.. ..+
T Consensus 121 ~~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~----~~G- 195 (1134)
T 3spa_A 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK----DAG- 195 (1134)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTT-
T ss_pred hHHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH----HcC-
Confidence 356677789999999999999999999999876555444445567799999999999999999998887662 222
Q ss_pred CcchhhhhhHhHHHHHHHHHHHHcCCH-HHHHHHHHhhhhc
Q 013549 182 ENYKTYGAVNSRANAVKGLVELAHGNL-ESAESFFKGLQEE 221 (441)
Q Consensus 182 ~~~~~~~~l~~~a~al~gl~~~~qG~y-~eAe~l~~~aL~~ 221 (441)
..+ ++..+...+.+ +...|+. ++|..+|++....
T Consensus 196 ~~P----DvvTYntLI~g--lcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 196 LTP----DLLSYAAALQC--MGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCC----CHHHHHHHHHH--HHHHTCCHHHHHHHHHHHHHH
T ss_pred CCC----cHHHHHHHHHH--HHhCCCcHHHHHHHHHHHHHc
Confidence 111 22222222333 3467874 7899999998884
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.86 E-value=0.79 Score=47.86 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
++..||.+.+....++.|+.+|.+|+.+ .|..+..+|.||.++..+|+.-+| .-.|-|+|..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a------~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTT------IFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHH------HHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHH------HHHHHHHHhc
Confidence 5779999999999999999999999987 599999999999999999987665 6777777653
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.67 E-value=2.1 Score=36.76 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=58.8
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCch-hHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAES-WRGISLLAMSTLLYESGNYVEAIEKLQKVE 135 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~-~~a~~l~nLa~l~~~qG~y~eA~e~~~ral 135 (441)
.+|+. .+.-|||..+-++. ......+++.+++..+.. +| ..=.++.-||.-+++.|+|++|....+..|
T Consensus 36 ~~vs~-qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 36 PTATI-QSRFNYAWGLIKST-DVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GGSCH-HHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCh-hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555 45567887776663 666788999999998862 23 467899999999999999999999999988
Q ss_pred Hhhhhh
Q 013549 136 NFKNSI 141 (441)
Q Consensus 136 ~i~~~~ 141 (441)
.+.+..
T Consensus 106 ~~eP~N 111 (134)
T 3o48_A 106 EHERNN 111 (134)
T ss_dssp TTCTTC
T ss_pred hhCCCC
Confidence 877653
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.36 E-value=8 Score=38.51 Aligned_cols=96 Identities=15% Similarity=-0.085 Sum_probs=70.5
Q ss_pred HHcCCHHHHHHHHHhhhh---c-----cCCc--------------hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhc
Q 013549 203 LAHGNLESAESFFKGLQE---E-----EGCT--------------GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQK 260 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~---~-----~~~~--------------~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~ 260 (441)
...|+.++|...+++++. + .... ..+...++..+...|++.+|....++++++.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---- 201 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH---- 201 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 357899999999999988 1 1000 0122345667788999999999999998771
Q ss_pred ccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC
Q 013549 261 DFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHH 318 (441)
Q Consensus 261 ~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~H 318 (441)
.+ .+ ....-|=.+|...|+..+|...|+++-....+-||-+=
T Consensus 202 ------P~------~E----~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 202 ------PY------RE----PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp ------TT------CH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred ------CC------CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 11 11 13456777889999999999999999999999999653
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.18 E-value=3.3 Score=37.15 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 013549 79 DESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQ 158 (441)
Q Consensus 79 ~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~ 158 (441)
.|+++.|..+.++. +.-.....||...-.+|+++=|+..|+++-+ +..|.-+|..
T Consensus 18 lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~ 72 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLV 72 (177)
T ss_dssp TTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHH
Confidence 36788888886543 1234688999999999999999999998622 2334455666
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHH
Q 013549 159 LGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHA 238 (441)
Q Consensus 159 ~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~ 238 (441)
.|+-+.-. +..++.+..+. . ++....++.+|+++++..+|.++=. .+ -+.-+| ..
T Consensus 73 tg~~e~L~----kla~iA~~~g~--------~-----n~af~~~l~lGdv~~~i~lL~~~~r----~~-eA~~~A---~t 127 (177)
T 3mkq_B 73 TGDVNKLS----KMQNIAQTRED--------F-----GSMLLNTFYNNSTKERSSIFAEGGS----LP-LAYAVA---KA 127 (177)
T ss_dssp HTCHHHHH----HHHHHHHHTTC--------H-----HHHHHHHHHHTCHHHHHHHHHHTTC----HH-HHHHHH---HH
T ss_pred hCCHHHHH----HHHHHHHHCcc--------H-----HHHHHHHHHcCCHHHHHHHHHHCCC----hH-HHHHHH---HH
Confidence 67654333 33333333331 1 1334556789999999999976532 12 122222 34
Q ss_pred ccChHHHHHHHHHH
Q 013549 239 TRNFLLAKKFYQKV 252 (441)
Q Consensus 239 qG~y~eA~~ly~rA 252 (441)
.|-.+.|.++.+.+
T Consensus 128 ~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 128 NGDEAAASAFLEQA 141 (177)
T ss_dssp TTCHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHh
Confidence 57777787775543
No 242
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=85.82 E-value=3 Score=39.12 Aligned_cols=63 Identities=6% Similarity=0.042 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH-hhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFLKAP 361 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~-qG~~eeA~~~~~Ae~ly~rAL~i~~~~ 361 (441)
+.|...|++|++|.++.+.|.||--....-|.+..|.. .++.++| ...|..-|..|+.-+...
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A--~~lAk~afd~Ai~eld~l 210 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA--CRLAKAAFDDAIAELDTL 210 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHhhhcc
Confidence 57899999999999999999999877666666665554 7888888 445666677776666543
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.66 E-value=12 Score=32.83 Aligned_cols=107 Identities=17% Similarity=0.058 Sum_probs=75.7
Q ss_pred CchHHHHHHHHHHHHccCh------HHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHH
Q 013549 224 CTGSAALSYGEYLHATRNF------LLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFG 297 (441)
Q Consensus 224 ~~~~~a~~~a~~~~~qG~y------~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~ 297 (441)
..+.+..+|..+....|+. ++=.+.|+||++-. .. . . +..- ...+--....|.. ...++.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~---Pp-----~--k-~~~w-rrYI~LWIrYA~~-~ei~D~d 77 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL---PP-----D--K-YGQN-ESFARIQVRFAEL-KAIQEPD 77 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS---CG-----G--G-GTTC-HHHHHHHHHHHHH-HHHHCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC---Cc-----c--c-cccH-HHHHHHHHHHHHH-HHhcCHH
Confidence 3456677787777777888 88889999999862 11 1 0 1110 1122223466644 6679999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 298 DAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 298 eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+|.+.|+.|+.+ |-..+.....-|..--+||+...| ..++.+|+..
T Consensus 78 ~aR~vy~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kA------RkILg~AiG~ 123 (161)
T 4h7y_A 78 DARDYFQMARAN--------CKKFAFVHISFAQFELSQGNVKKS------KQLLQKAVER 123 (161)
T ss_dssp GCHHHHHHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHT
T ss_pred HHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHcccHHHH------HHHHHHHhcc
Confidence 999999999997 444577777888889999998776 7888888774
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.37 E-value=1.9 Score=37.40 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Q 013549 60 PVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKN 139 (441)
Q Consensus 60 ~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~ 139 (441)
.+....-|||..+-++. ....-.+++.+++..+... ++ ..=.++..||.-+++.|+|++|..+.+..|.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~-~~~di~~GI~LLe~l~~~~-----~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA-----ES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHC-----CS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC-----cc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 44555667887776664 6677889999999998721 22 4667899999999999999999999999888776
Q ss_pred hh
Q 013549 140 SI 141 (441)
Q Consensus 140 ~~ 141 (441)
..
T Consensus 109 ~n 110 (144)
T 1y8m_A 109 NN 110 (144)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.82 E-value=15 Score=32.36 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=46.4
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
...++.++|...|+.++..++...-+...+|.+-.+||+...|..+..+|+..
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 34689999999999999865556677788999999999999999999999976
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=84.46 E-value=3.4 Score=42.99 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013549 228 AALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 228 ~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL 307 (441)
....+|.+.+.+..++.|..+|++|+.+. |..| ..+|-||.++..+|++-+|.-+|.|+|
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~---------P~~G-----------~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV---------PSNG-----------QPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTBS-----------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC---------CCCC-----------chHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34567999999999999999999999982 1223 246889999999999999999999998
Q ss_pred H
Q 013549 308 T 308 (441)
Q Consensus 308 ~ 308 (441)
.
T Consensus 214 ~ 214 (497)
T 1ya0_A 214 A 214 (497)
T ss_dssp S
T ss_pred h
Confidence 5
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.40 E-value=5.2 Score=35.85 Aligned_cols=48 Identities=27% Similarity=0.123 Sum_probs=33.5
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
+..|+++.|..+.+.. ........+|...-.+|+++-|+..|+++=+.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 4788888888876543 12334556777777888888888888876544
No 248
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=83.18 E-value=2.4 Score=39.83 Aligned_cols=56 Identities=11% Similarity=0.000 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~ 138 (441)
+.|...|++|+.+..+.+.|.||-......|.+.+|++ .|+-++|..+-++|.+-+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~A 203 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 203 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 57889999999999888999999999999999999888 799999999999885544
No 249
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=82.60 E-value=12 Score=31.20 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGS--HHPKVGVVLTCLALMFR 333 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~--~HP~va~~l~nLa~ly~ 333 (441)
.+..-|.-.-..|+|++|..+|.+|++.+...+-. ..|..-..+.....-|.
T Consensus 20 ~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl 73 (117)
T 2cpt_A 20 DLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL 73 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34566767778899999999999999999998743 45666666666655553
No 250
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=82.35 E-value=3.5 Score=39.31 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~ 138 (441)
+.|...|++|+.+. ..+.|.||-......|.+.+|++ .++-++|+.+-++|.+-+
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 57899999999999 88999999999999999999988 799999999999886544
No 251
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=82.14 E-value=5.3 Score=38.03 Aligned_cols=63 Identities=6% Similarity=0.042 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH-hhchhhhhhhHHHHHHHHHHHHHhhcC
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFLKAP 361 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~-qG~~eeA~~~~~Ae~ly~rAL~i~~~~ 361 (441)
+.|...|++|++|.++.+.|.||--....-|.+..|.. .++.++| ...|..-|..|+.-+...
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~A--c~LAk~AFd~Ai~eLd~L 236 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA--CRLAKAAFDDAIAELDTL 236 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhcc
Confidence 57889999999999999999999987777777766655 6888887 344556666665555443
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.67 E-value=2.3 Score=46.64 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKC 172 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~ 172 (441)
...|+-=+..+.++|+|+-|+++-++|..+.++.+. +|..|+.+|..+|+|+.|+-..+.|
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~----tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFE----SWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH----HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH----HHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445666677888899999999999999999988763 8999999999999999998777766
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=81.25 E-value=8.7 Score=43.62 Aligned_cols=105 Identities=10% Similarity=-0.052 Sum_probs=73.4
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
.+...-..++-+--.+++ .|+.++|..+++..-....+-. .|+ ..|+|.|-.-|++.|++++|.++|.+...
T Consensus 122 ~~~~~~~TynaLIdglcK----~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLL----TDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444445555555554 4789999999987654432222 334 35899999999999999999999998743
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCc-chhHHHHHHH
Q 013549 137 FKNSILGVRVAAMEALAGLYLQLGQD-DTSSVVADKC 172 (441)
Q Consensus 137 i~~~~lg~~~~al~~La~l~~~~G~~-~~A~~l~~~~ 172 (441)
. .+.+++.+++.|...+...|+. ++|..++++.
T Consensus 194 ~---G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 194 A---GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp T---TCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred c---CCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 2 2445677899988888888885 5666666554
No 254
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=81.20 E-value=5 Score=38.19 Aligned_cols=65 Identities=6% Similarity=0.031 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH-hhchhhhhhhHHHHHHHHHHHHHhhcCCC
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFLKAPPL 363 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~-qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~ 363 (441)
+.|...|++|++|.+.-+.|.||--....-|.+..|.. .+..++| ...|..-|..|+.-+.....
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~A--c~lAk~Afd~Ai~eld~L~E 217 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA--CNLAKQAFDEAIAELDTLGE 217 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHH--HHHHHHHHHHHHHhhhccCh
Confidence 57899999999999999999999877666666665554 7888888 44567777788777665443
No 255
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=81.10 E-value=6.1 Score=37.34 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH-hhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~-qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
+.|...|++|++|..+.+.|.||--....-|.+..|.. .+..++| ...|..-|..|+.-+..
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~A--c~lAk~Afd~Ai~eld~ 210 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQA--CHLAKTAFDDAIAELDT 210 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999977776677766554 7888887 33455566666555544
No 256
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=80.80 E-value=3.3 Score=39.50 Aligned_cols=56 Identities=11% Similarity=0.005 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~ 138 (441)
+.|+..|++|+.+..+.+.|.||-......|.+.+|+. .|+-++|+.+-++|.+-.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 47899999999999888999999999999999999888 699999999999885443
No 257
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=79.70 E-value=3.7 Score=38.82 Aligned_cols=57 Identities=12% Similarity=-0.029 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~ 138 (441)
-+.|...|++|+.+..+.+.|.||-......|.+.+|+. .++-++|..+-++|++-+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 357889999999998888999999999999999999888 699999999999885543
No 258
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=79.28 E-value=4 Score=38.30 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~ 138 (441)
-+.|...|++|+.+..+.+.|.||-......|.+.+|++ .++-++|..+-++|.+-+
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 457899999999999889999999999999999999886 599999999999885443
No 259
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=79.20 E-value=3.9 Score=38.93 Aligned_cols=56 Identities=11% Similarity=0.000 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549 83 SQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 83 ~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~ 138 (441)
+.|+..|++|+.+..+.+.|.||-......|.+.+|++ .++-++|..+-++|.+-+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 57889999999998889999999999999999999888 699999999998885543
No 260
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=78.01 E-value=5.5 Score=37.95 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH-hhchhhhhhhHHHHHHHHHHHHHhhc
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRN-KAMQEHSSALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~-qG~~eeA~~~~~Ae~ly~rAL~i~~~ 360 (441)
+.|...|++|++|. ..+.|.||--....-|.+..|.. .++.++| ...|..-|..|+.-+..
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~A--c~lAk~Afd~Ai~eld~ 234 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAA--IDMAKEAFEMAIEQLDK 234 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHH--HHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHhhhc
Confidence 57899999999999 88999999877666666666555 7888887 33455556666555543
No 261
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=77.14 E-value=3 Score=38.93 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhh
Q 013549 80 ESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENFK 138 (441)
Q Consensus 80 g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i~ 138 (441)
|.-+.|...|++|+.+..+.+.|.||-......|.+.+|++ .++-++|..+-++|+++.
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 33678999999999999888999999999999999998876 688999999999987754
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.71 E-value=29 Score=33.69 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHccChHHHHHHHH
Q 013549 225 TGSAALSYGEYLHATRNFLLAKKFYQ 250 (441)
Q Consensus 225 ~~~~a~~~a~~~~~qG~y~eA~~ly~ 250 (441)
++....-+|..|..-|+|.+|+.+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45566778889999999999999874
No 263
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.63 E-value=12 Score=39.16 Aligned_cols=135 Identities=8% Similarity=0.022 Sum_probs=51.2
Q ss_pred ChhhHHHHHHHHHHhhh---ccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhh-----------
Q 013549 78 SDESYSQGMLVLEQCLS---TQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILG----------- 143 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~---i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg----------- 143 (441)
.+.+|++|..+-.+... +..-..-.-++-.|.++.-.+.++...|+..+..........|+..-+.
T Consensus 148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~ 227 (523)
T 4b4t_S 148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN 227 (523)
T ss_dssp -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence 45678898888765542 1100000124446777777777777788877754333333322222111
Q ss_pred h-hHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCc-chhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Q 013549 144 V-RVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPEN-YKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE 220 (441)
Q Consensus 144 ~-~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~-~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~ 220 (441)
. ....+|-+...|...+.|++|..+..++ ..|.. .++ ....+-....|.++..+++|.+|..++..|+.
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~------~fP~~~~sn--~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKL------EYPHTDVSS--SLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHH------CSCTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcC------cCCcccCCH--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 1335666788899999999999988766 23321 111 11122233468888899999999999999998
No 264
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=75.54 E-value=12 Score=35.18 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH-HhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFR-NKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~-~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
+.|...|++|++|.++.+.|.||--....-|.+..|. -.+..++| ...|..-|..|+.-+.
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~A--c~lAk~Afd~Ai~eld 211 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEA--ISLAKTTFDEAMADLH 211 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHH--HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHHhh
Confidence 5788999999999999999999997776666666655 56788877 3345555555655444
No 265
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=73.68 E-value=7.9 Score=30.19 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCCchHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFG-SHHPKVGVVLT 326 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG-~~HP~va~~l~ 326 (441)
+..-|.-.-..|+|++|..+|.+|++.+...+- ...|..-..+.
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir 66 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYE 66 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456677788899999999999999999998742 23344444443
No 266
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=72.10 E-value=15 Score=40.19 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=43.6
Q ss_pred HHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 233 GEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 233 a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
+.++.++|+|+-|.++-++|..+. |. ...+-..|+.+|..+|+|+.|.--+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a------------------Ps--eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA------------------LD--SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC------------------SS--CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC------------------ch--hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 677888999999999999999881 11 1346789999999999999998655544
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.83 E-value=38 Score=38.51 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=86.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhh---ccCC----ch--------------HHH--HHHHHHHHHccChHHHHHHHHHHH
Q 013549 197 VKGLVELAHGNLESAESFFKGLQE---EEGC----TG--------------SAA--LSYGEYLHATRNFLLAKKFYQKVI 253 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~---~~~~----~~--------------~~a--~~~a~~~~~qG~y~eA~~ly~rAL 253 (441)
+.|.+++..|++++|..+|+++-. .+.. .. ... .-...++..+|-|+.+..+-+.||
T Consensus 847 l~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi 926 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 926 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 568889999999999999999844 1110 00 000 112457778899999999999999
Q ss_pred HHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------------H-HHHHHH-------
Q 013549 254 EVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTR-------------T-LTKTEE------- 312 (441)
Q Consensus 254 ~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~r-------------A-L~i~e~------- 312 (441)
+.. .. + .+.....-..++=..+.+.|+|++|-.-+.+ - ..+.|.
T Consensus 927 ~~~---~~--~----------~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 927 ASK---ET--D----------DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHC---CS--C----------CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred Hhc---cC--C----------ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 861 11 0 0111111234555566677888888444421 1 112221
Q ss_pred -h-hCCCCchHHHHHHHHH-----------------HHHHHhhchhhhhhhHHHHHHHHHHHHHhh
Q 013549 313 -L-FGSHHPKVGVVLTCLA-----------------LMFRNKAMQEHSSALLIQEGLYRRALEFLK 359 (441)
Q Consensus 313 -~-lG~~HP~va~~l~nLa-----------------~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~ 359 (441)
. |+.-+..|-.+|...| ..+-.+|+|.+| |+-+|+++..+..
T Consensus 992 ~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~A-----A~vmYe~~~RL~~ 1052 (1139)
T 4fhn_B 992 NYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDA-----AAIIYEKLSRYIS 1052 (1139)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCH-----HHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHH-----HHHHHHHHHHhhh
Confidence 1 2444555555554443 234467888888 7899999988764
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=69.76 E-value=14 Score=31.50 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP-KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP-~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+..+..++|..+.+..+-++ .++++.+.++.+. ++| .....+.-||.-|.+.|+|++| .....+.|++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d----~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg~yklgdY~~A------r~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVND----ERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMA------KRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHH----HHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHH------HHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHH----HHHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHhhhHHHH------HHHHHHHHhh
Confidence 45678899988887766533 3466666666664 457 6789999999999999999987 4455554443
No 269
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=68.08 E-value=6.6 Score=37.52 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhccccCC--CCCchhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHh
Q 013549 82 YSQGMLVLEQCLSTQPSDG--QLAESWRGISLLAMSTLLYE-SGNYVEAIEKLQKVENF 137 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~--g~~h~~~a~~l~nLa~l~~~-qG~y~eA~e~~~ral~i 137 (441)
-+.|+..|++|+.+..+.+ .|.||-......|.+.+|++ .++-++|+.+-++|.+-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4578899999999988888 99999999999999999886 69999999999998665
No 270
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=67.32 E-value=38 Score=26.00 Aligned_cols=51 Identities=8% Similarity=-0.028 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCCchHHHHHHHHHHHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFG-SHHPKVGVVLTCLALMF 332 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG-~~HP~va~~l~nLa~ly 332 (441)
.+..-|.-.-..|+|++|..+|.+|++.+...+- ...|..-..+.....-|
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eY 66 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEY 66 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3455566667789999999999999999998753 34465656666555555
No 271
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=66.43 E-value=83 Score=29.14 Aligned_cols=139 Identities=9% Similarity=-0.008 Sum_probs=80.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH----hhhh---------------hhhhhHHHHHHHHHHHHhc-CCcch--------
Q 013549 113 AMSTLLYESGNYVEAIEKLQKVEN----FKNS---------------ILGVRVAAMEALAGLYLQL-GQDDT-------- 164 (441)
Q Consensus 113 nLa~l~~~qG~y~eA~e~~~ral~----i~~~---------------~lg~~~~al~~La~l~~~~-G~~~~-------- 164 (441)
.+|.+...-|+|++..+..+++.. .... .+|.+-.+|--+..+-... |+...
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqkek~~~~~~~~i~~yr 90 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQLNNDELVKICSEYV 90 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 688889999999999999988776 2211 1122222333232222221 32111
Q ss_pred ------hHHHHHHHHHHHHhcC-CCcchhhhhhHhHHHHHHHHH-----HHHcCCHHHHHHHHHhhhh--------ccCC
Q 013549 165 ------SSVVADKCLQLCEKHK-PENYKTYGAVNSRANAVKGLV-----ELAHGNLESAESFFKGLQE--------EEGC 224 (441)
Q Consensus 165 ------A~~l~~~~L~i~~~~~-~~~~~~~~~l~~~a~al~gl~-----~~~qG~y~eAe~l~~~aL~--------~~~~ 224 (441)
-...++..+.+..+.. |.. +...+ +.+ +.|-+ ....|+-+.|...|+.|.+ +||-
T Consensus 91 ~kie~EL~~iC~dil~lld~~Lip~a--EskVF--Y~K-MKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPi 165 (227)
T 2o8p_A 91 FSLRKDIKAFLQSFEDCVDRLVEKSF--FSKFF--KLK-VKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQL 165 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSH--HHHHH--HHH-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGS
T ss_pred HHHHHHHHHHHhhHHHHHHHhccCcH--HHHHH--HHH-HhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChH
Confidence 1122333344444444 321 11111 111 23433 3457888899999999987 2332
Q ss_pred chHHHHHHHHHHH-HccChHHHHHHHHHHHHHH
Q 013549 225 TGSAALSYGEYLH-ATRNFLLAKKFYQKVIEVL 256 (441)
Q Consensus 225 ~~~~a~~~a~~~~-~qG~y~eA~~ly~rAL~i~ 256 (441)
....++|+.-+|+ -+++.++|..+-++|+++.
T Consensus 166 rLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 166 PLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 2356788877665 5799999999999999884
No 272
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=65.23 E-value=27 Score=35.47 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHh
Q 013549 282 ATFALGQLEAHMGN--FGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFL 358 (441)
Q Consensus 282 al~nLg~ly~~qG~--y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~ 358 (441)
++.|||.+-...-. ...++++|.+|+.+.++.++..| .--+..+|.-+.+.++|.+| ...+-.|-.+.
T Consensus 264 ALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eA------l~~wa~aa~Vi 333 (489)
T 4gq4_A 264 ALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREA------LQAWADTATVI 333 (489)
T ss_dssp HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHH
T ss_pred hhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHH------HHHhhhhhhhh
Confidence 56777776544322 23588999999999999999999 34577888999999999887 55555555554
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=65.09 E-value=19 Score=31.18 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 013549 279 ALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP-KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 279 ~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP-~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+..+..++|..+.+..+-++ -++.+.+.++.+- ++| .....+..||.-|.+.|+|++| ..+.+..|++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~d----i~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~A------r~y~d~lL~~ 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVND----ERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMA------KRYVDTLFEH 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHH----HHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHHH------HHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHHH------HHHHHHHHhc
Confidence 34678899998888777654 2455666666554 456 6888999999999999999987 5555555554
No 274
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=64.91 E-value=49 Score=26.02 Aligned_cols=50 Identities=6% Similarity=-0.020 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCCchHHHHHHHHHHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFG-SHHPKVGVVLTCLALMF 332 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG-~~HP~va~~l~nLa~ly 332 (441)
+..-|.-.-..|+|++|..+|.+|++.+...+- +..|..-..+..-..-|
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eY 68 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGY 68 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456666677889999999999999999999864 44566555555444444
No 275
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=64.67 E-value=21 Score=30.75 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCcchH
Q 013549 321 VGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESEGVE 369 (441)
Q Consensus 321 va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~~~~ 369 (441)
++..+...|.+|...|+.+.| --+|-|...+.-...|.||+..
T Consensus 39 ta~~llr~A~~y~~egd~e~A------Yily~R~~~L~~e~IpkHpdy~ 81 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHA------FILYNKYITLFIEKLPKHRDYK 81 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHH------HHHHHHHHHHHHTTGGGSTTTT
T ss_pred HHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHHcccCccch
Confidence 677888889999999999987 7899999999854467888843
No 276
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=64.01 E-value=11 Score=29.06 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSH 317 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~ 317 (441)
-..+|.=|.-.|+|+.|..+|+.+++--++.+-.=
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~ 49 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 35788889999999999999999999888875443
No 277
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=63.18 E-value=13 Score=28.74 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCCchHHHHH
Q 013549 285 ALGQLEAHMGNFGDAEEILTRTLTKTEELFG-SHHPKVGVVL 325 (441)
Q Consensus 285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG-~~HP~va~~l 325 (441)
.-|.-.-..|+|++|..+|.+|++.+...+- ...|..-..+
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~i 57 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAY 57 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3344456679999999999999999998742 2334444333
No 278
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=62.49 E-value=14 Score=35.20 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhh--CCCCchHHHHHHHHHHHHH-HhhchhhhhhhHHHHHHHHHHHHH
Q 013549 297 GDAEEILTRTLTKTEELF--GSHHPKVGVVLTCLALMFR-NKAMQEHSSALLIQEGLYRRALEF 357 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~l--G~~HP~va~~l~nLa~ly~-~qG~~eeA~~~~~Ae~ly~rAL~i 357 (441)
+.|...|++|++|.++-+ .|.||--....-|.+..|. -.++.++| -.+-++|++-
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~A------c~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGA------MKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHH------HHHHHHHHhh
Confidence 578899999999999999 9999998877777777766 46777776 5666666554
No 279
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.72 E-value=1.3e+02 Score=29.75 Aligned_cols=101 Identities=11% Similarity=0.054 Sum_probs=63.7
Q ss_pred HHHHccChHHHHHHHHHHHHHHHh--hcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 013549 235 YLHATRNFLLAKKFYQKVIEVLAE--QKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEE 312 (441)
Q Consensus 235 ~~~~qG~y~eA~~ly~rAL~i~~~--~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~ 312 (441)
+.....+.++|.++.++..+-... .+. ....... .+ .+..+-...-++..|...|+.++|+++++++-.+.+.
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~-~~~~~~~-~~---~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~ 159 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKK-QRNNGSK-DH---GDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDK 159 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSC-CCCCCSS-SS---CCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhh-hcccchh-hh---hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Confidence 344567888998888765432111 111 0011110 01 1112334467899999999999999999999988887
Q ss_pred hhCCCCch-HHHHHHHHHHHHHHhhchhhh
Q 013549 313 LFGSHHPK-VGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 313 ~lG~~HP~-va~~l~nLa~ly~~qG~~eeA 341 (441)
.-| .+|. .+..+...+..|..+++|.++
T Consensus 160 ~~~-~~~~v~~~~y~~~~~~~~~~~~~a~~ 188 (393)
T 4b4t_O 160 KDS-IPLRITNSFYSTNSQYFKFKNDFNSF 188 (393)
T ss_dssp SCC-SSSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCC-ccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 544 4555 456666778888888888664
No 280
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=59.62 E-value=44 Score=33.39 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 282 ATFALGQLEAHMGNF--GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 282 al~nLg~ly~~qG~y--~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
++.|||.+-.----. ..++.+|.+|+....+.++..|-. -+..+|.-|.+.+++.||
T Consensus 257 ALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvY---PYtylgGy~yR~~~~reA 315 (472)
T 3re2_A 257 AIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIY---PYTYLGGYYYRKKKYYEA 315 (472)
T ss_dssp HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHH
T ss_pred hhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCcc---chhhhhhhhhhcchHHHH
Confidence 466777665443222 239999999999999999999953 466777888999999887
No 281
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.41 E-value=1.3e+02 Score=28.93 Aligned_cols=133 Identities=10% Similarity=-0.012 Sum_probs=79.0
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHHH
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-LGVRVAAMEALAGLY 156 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~-lg~~~~al~~La~l~ 156 (441)
..|+|=||.++|+-...-+.+. .++.+....+..=+..+.+.|++.-|.++..-.+++.+.. ..++....+.|..++
T Consensus 25 ~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 25 KAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3577888888887776655443 3566677777777777777888888877765555544432 112234556666665
Q ss_pred HhcCCcc-hhHHHHHHHHHHHHhcCCCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHh
Q 013549 157 LQLGQDD-TSSVVADKCLQLCEKHKPENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKG 217 (441)
Q Consensus 157 ~~~G~~~-~A~~l~~~~L~i~~~~~~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~ 217 (441)
......+ .=..+.++++.-..+.++... ....+ -.+.|..+...|+|.+|+.+|-.
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~-Gdp~L----H~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKF-GDPYL----HNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTT-CCHHH----HHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCC-CCHHH----HHHHHHHHhhcCCHHHHHHHHHh
Confidence 4433322 234555666555544432111 11111 12457777889999999998863
No 282
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.34 E-value=1.2e+02 Score=28.96 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=47.1
Q ss_pred ChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 78 SDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 78 ~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
..|+.++|+...+..+. .+|.=+..-..|-.+++-.|+|++|..-++-...+.+..
T Consensus 9 ~~g~L~~al~~~~~~VR--------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp TTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred hCCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45789999999998885 567778888899999999999999999988877776654
No 283
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=56.94 E-value=18 Score=28.03 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
+...|.-....|+|.+|+.+|+.+++....
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 334444456889999999999887665433
No 284
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=55.13 E-value=21 Score=27.66 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
+..-|.-....|+|.+|+.+|+.+++....
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 444444556888888888888887665543
No 285
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=53.04 E-value=26 Score=27.31 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
.|..+..-|.-....|+|++|+.+|+.+++....
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555666666678899999999999998766544
No 286
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=52.85 E-value=29 Score=27.78 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 104 ESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 104 h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
+...|-.+.-.+.-+...|+|+|||+.++++.+....
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3345666667777788899999999999998655443
No 287
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=52.14 E-value=1.2e+02 Score=26.39 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=44.8
Q ss_pred HHcCCHHHHHHHHHhhhhccCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 203 LAHGNLESAESFFKGLQEEEGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 203 ~~qG~y~eAe~l~~~aL~~~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
..||+-|+=++++...+..+...+....-+|..|...|+-.+|.++..+|-+-
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 37999999999998887766666788889999999999999999999999863
No 288
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=51.96 E-value=66 Score=32.74 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=43.2
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhchhhh
Q 013549 282 ATFALGQLEAH---MGNFGDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQEHS 341 (441)
Q Consensus 282 al~nLg~ly~~---qG~y~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~eeA 341 (441)
++.|||.+-.. -|+- .++.+|.+|+....+.++..|-. -++.+|.-|.+.++|.+|
T Consensus 279 ALgnLgDLEe~~pt~gr~-~~~~L~~~AI~sa~~~Y~n~HvY---PYtYlgGy~yR~~~~reA 337 (550)
T 3u84_A 279 ALGNLADLEELEPTPGRP-DPLTLYHKGIASAKTYYRDEHIY---PYMYLAGYHCRNRNVREA 337 (550)
T ss_dssp HHHHHHHHHHHSCCTTCC-CHHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHH
T ss_pred hhcchhhHhhcCCCCCCC-CHHHHHHHHHHHHHHHhccCCcc---ceeecchhhhhcchHHHH
Confidence 45666665443 3333 48999999999999999999953 466778899999999887
No 289
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=50.78 E-value=3.1e+02 Score=30.77 Aligned_cols=208 Identities=14% Similarity=0.127 Sum_probs=113.8
Q ss_pred CchHHHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 57 NSNPVVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 57 ~h~~~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
..-.-......+++.| .|..++++.++.+-|... ...+....+.++..||.++...|+ ++.+++...+.
T Consensus 371 ~~~~k~sA~aSLGlIh------~g~~~~gl~~L~~yL~~~---~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~ 439 (963)
T 4ady_A 371 QNWAKFTATASLGVIH------KGNLLEGKKVMAPYLPGS---RASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIV 439 (963)
T ss_dssp CTHHHHHHHHHHHHHT------SSCTTTHHHHHTTTSTTS---CCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhhc------cCchHHHHHHHHHhcccc---CCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHc
Confidence 3334445555666666 245567888877766411 123455689999999999877664 78887777664
Q ss_pred hhhh------hhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhhhhHh-HHHHHHHHHHHHcCCHH
Q 013549 137 FKNS------ILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYGAVNS-RANAVKGLVELAHGNLE 209 (441)
Q Consensus 137 i~~~------~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~~l~~-~a~al~gl~~~~qG~y~ 209 (441)
-... .--++..+.-.|+-.|+-.++. + .++....++.... .... .+..-+|+++.-.|+-+
T Consensus 440 ~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-e---v~e~L~~~L~dd~--------~~~~~~AalALGli~vGTgn~~ 507 (963)
T 4ady_A 440 ENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-E---VYEALKEVLYNDS--------ATSGEAAALGMGLCMLGTGKPE 507 (963)
T ss_dssp HHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-H---HHHHHHHHHHTCC--------HHHHHHHHHHHHHHHTTCCCHH
T ss_pred CccccccccccHHHHHHHHHHHHHHhcCCCCH-H---HHHHHHHHHhcCC--------HHHHHHHHHHHhhhhcccCCHH
Confidence 4321 0112223333556555443432 2 2233333332221 0111 11112477777788877
Q ss_pred HHHHHHHhhhhccCCc--hHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHH
Q 013549 210 SAESFFKGLQEEEGCT--GSAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALG 287 (441)
Q Consensus 210 eAe~l~~~aL~~~~~~--~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg 287 (441)
-.+.+.+-+.++.+.. ..++..+|.+ ..|+-+.+..+.+...+. .. .++..++...+|
T Consensus 508 ai~~LL~~~~e~~~e~vrR~aalgLGll--~~g~~e~~~~li~~L~~~----~d--------------p~vRygaa~alg 567 (963)
T 4ady_A 508 AIHDMFTYSQETQHGNITRGLAVGLALI--NYGRQELADDLITKMLAS----DE--------------SLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHH--TTTCGGGGHHHHHHHHHC----SC--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhh--hCCChHHHHHHHHHHHhC----CC--------------HHHHHHHHHHHH
Confidence 7778877776632211 2234445433 567777776665543322 11 123445667788
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 013549 288 QLEAHMGNFGDAEEILTRTL 307 (441)
Q Consensus 288 ~ly~~qG~y~eAe~l~~rAL 307 (441)
..|...|+-..-..++..+.
T Consensus 568 lAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHhc
Confidence 88888888665555666665
No 290
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=50.46 E-value=16 Score=29.18 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=23.9
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhhcc
Q 013549 232 YGEYLHATRNFLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 232 ~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~ 261 (441)
.++.+.+.|+|+||++++++|...+.+..+
T Consensus 21 rAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 366777899999999999999987655443
No 291
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=49.20 E-value=29 Score=26.73 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
-|..+...|.-....|+|++|+.+|..+++....
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444455555566889999999999998766543
No 292
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=47.03 E-value=35 Score=26.88 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 107 RGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 107 ~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
.|..+...|.-....|+|.+|+.+|..+++....
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4455556666667889999999999988766544
No 293
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.90 E-value=27 Score=39.72 Aligned_cols=99 Identities=12% Similarity=0.004 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-------------HHHHhhC--CCCchHHHHHHHHHHHHHHhhchhhhhhhHHH
Q 013549 283 TFALGQLEAHMGNFGDAEEILTRTLT-------------KTEELFG--SHHPKVGVVLTCLALMFRNKAMQEHSSALLIQ 347 (441)
Q Consensus 283 l~nLg~ly~~qG~y~eAe~l~~rAL~-------------i~e~~lG--~~HP~va~~l~nLa~ly~~qG~~eeA~~~~~A 347 (441)
..-+|.+|...|+|++|.++|++|-. ....... +........+..+..++..+|.++.+
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v------ 918 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA------ 918 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH------
Confidence 46789999999999999999988721 1111111 11122345678888999999988876
Q ss_pred HHHHHHHHHHhhcCCCCCcchHh-hhccHHHHHHHhccHHHHHH
Q 013549 348 EGLYRRALEFLKAPPLESEGVET-KVDRTDIVALARGGYAEALS 390 (441)
Q Consensus 348 e~ly~rAL~i~~~~~~~~~~~~~-~l~nl~~~~~~~g~yaeal~ 390 (441)
..+-+.|++.. ..+.++.-. ...++=..++..|+|++|..
T Consensus 919 i~fa~lAi~~~---~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 919 LEFSLLADASK---ETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp HHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred HHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 67788887753 223333222 34466666788889888854
No 294
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=46.00 E-value=29 Score=28.73 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 108 GISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 108 a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
|..+...|.-....|+|.+|+.+|..+++.+..
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 333444444556789999999999988766544
No 295
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=44.66 E-value=2.3e+02 Score=27.62 Aligned_cols=223 Identities=13% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCCCcchhhh
Q 013549 109 ISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLCEKHKPENYKTYG 188 (441)
Q Consensus 109 ~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~~~~~~~~~~~~~ 188 (441)
+.+-.++.=|..+++|++|++++.....+.-+. |++..+.++.--+++++++..-. .
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~------------------~Q~~sg~DL~~llvevy~~~~~~-----~ 92 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQTLLRS------------------GQGGSGGDLAVLLVDTFRQAGQR-----V 92 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHHHHHHTCC-----C
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHC------------------CCcchHHHHHHHHHHHHHHcCCC-----C
Q ss_pred hhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh-------ccCCchHHHHHHHHHHHHccChHHHHHHH--------HHHH
Q 013549 189 AVNSRANAVKGLVELAHGNLESAESFFKGLQE-------EEGCTGSAALSYGEYLHATRNFLLAKKFY--------QKVI 253 (441)
Q Consensus 189 ~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~-------~~~~~~~~a~~~a~~~~~qG~y~eA~~ly--------~rAL 253 (441)
+-..+.+.+.-+........+. ..+..++++ ...-++....-+|..|..-|+|.+|+..| +.-.
T Consensus 93 ~~~~~~rL~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a 171 (336)
T 3lpz_A 93 DGASRGKLLGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLA 171 (336)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHH
Q ss_pred HHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCc--------------
Q 013549 254 EVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHP-------------- 319 (441)
Q Consensus 254 ~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP-------------- 319 (441)
++..+.....+++..+ -...-.=.-|...|+...|..++..-++...+ .||
T Consensus 172 ~mL~ew~~~~~~~e~d-----------lfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~----~~p~L~~q~~~~~~~~~ 236 (336)
T 3lpz_A 172 RMEYEWYKQDESHTAP-----------LYCARAVLPYLLVANVRAANTAYRIFTSALVE----DNKGLTVQNIGSQSAEL 236 (336)
T ss_dssp HHHHHHHHTSCGGGHH-----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HCTTSCCEESCC--CCC
T ss_pred HHHHHHHHhcCCccHH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh----cCCCccccccccCCccc
Q ss_pred -----hHHHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHHHHHhhcCCCCCc-chHhhhccHHHHHH
Q 013549 320 -----KVGVVLTCLALMFRNKAMQEHSSALLIQEGLYRRALEFLKAPPLESE-GVETKVDRTDIVAL 380 (441)
Q Consensus 320 -----~va~~l~nLa~ly~~qG~~eeA~~~~~Ae~ly~rAL~i~~~~~~~~~-~~~~~l~nl~~~~~ 380 (441)
.=..-...+-.+-+..+. .++|+.-.+-++......| ....-|+-++.+|.
T Consensus 237 ~~~p~~PLLNFl~lLllt~q~~~----------~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YF 293 (336)
T 3lpz_A 237 RIFPSLPLLNFISMLLLSVQKGS----------PDLFRQLKSKYEANLNELNGIWDTALELIAEMYF 293 (336)
T ss_dssp EECTTCHHHHHHHHHHHHHHSCC----------HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHc
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=43.48 E-value=1.4e+02 Score=27.15 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013549 227 SAALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRT 306 (441)
Q Consensus 227 ~~a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rA 306 (441)
.....|+..+ ..+...++.++|+....- + +|. . ....+-..|..+..+|+|.+|++.|++.
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~-----~------IG~--~-----~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNK-----G------IGT--K-----LSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHH-----T------SST--T-----BHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHC-----C------CcH--H-----HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555433 244577888888876543 1 231 0 1234568999999999999999999988
Q ss_pred HHH
Q 013549 307 LTK 309 (441)
Q Consensus 307 L~i 309 (441)
+.-
T Consensus 142 I~~ 144 (202)
T 3esl_A 142 AEN 144 (202)
T ss_dssp HHT
T ss_pred HHc
Confidence 763
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.36 E-value=65 Score=33.59 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 61 VVLQMINYALSHARSQKSDESYSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 61 ~a~~m~n~a~~~~~~~~~~g~y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
+-+.++|+-+-.+- ..+.|++|..+..++--.. .. ...+..++=+.-+|.++.-+++|.+|.+++..|+..++.
T Consensus 229 ~qa~l~nllLRnYL---~~~~y~qA~~lvsk~~fP~-~~--~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 229 TKAMLINLILRDFL---NNGEVDSASDFISKLEYPH-TD--VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHH---HSSCSTTHHHHHHHHCSCT-TT--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred hhHHHHHHHHHHHH---ccCcHHHHHHHHhcCcCCc-cc--CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 44555664333322 2457999999999885221 11 133457888999999999999999999999999876653
Q ss_pred h---hhhhHHHHHHHHHHHHhcCCcch
Q 013549 141 I---LGVRVAAMEALAGLYLQLGQDDT 164 (441)
Q Consensus 141 ~---lg~~~~al~~La~l~~~~G~~~~ 164 (441)
. .|.+..++.-+.-+-+-+|+..+
T Consensus 303 ~~~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 303 NSKSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred chhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 2 34444444444444444576543
No 298
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=38.36 E-value=3e+02 Score=27.05 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHh----hCCC----CchHHHHHHHHHHHHHHhhchhhh------
Q 013549 282 ATFALGQLEAHMG------NFGDAEEILTRTLTKTEEL----FGSH----HPKVGVVLTCLALMFRNKAMQEHS------ 341 (441)
Q Consensus 282 al~nLg~ly~~qG------~y~eAe~l~~rAL~i~e~~----lG~~----HP~va~~l~nLa~ly~~qG~~eeA------ 341 (441)
.+.|+|.+|..+| ...+|-.+|++|-.+++-+ +..- .|.+...|.+|.....+---+++|
T Consensus 125 vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~ 204 (392)
T 1zb1_A 125 TLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKLLNDQIS 204 (392)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTG
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456666554443 4789999999999998754 3322 344666666554433222122222
Q ss_pred --------hhhHHHHHHHHHHHHHhhcCCCCC----c-chHhhhccHHHHHHHhccHHHHHHH-hhchhhHHHHHHHHHH
Q 013549 342 --------SALLIQEGLYRRALEFLKAPPLES----E-GVETKVDRTDIVALARGGYAEALSV-QQNRKDEGERMKRWAE 407 (441)
Q Consensus 342 --------~~~~~Ae~ly~rAL~i~~~~~~~~----~-~~~~~l~nl~~~~~~~g~yaeal~~-~~~r~~eae~~~~~a~ 407 (441)
+=-.++-.+|++|.+.+.....+. + .....+..-...+.+...|-.++.. ..++.+|+-.+.+.|.
T Consensus 205 ~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~ 284 (392)
T 1zb1_A 205 SKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSM 284 (392)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 111234578999999987543221 1 1222222222333433344334333 2456677777777776
Q ss_pred HHHh
Q 013549 408 AAWR 411 (441)
Q Consensus 408 ~~~~ 411 (441)
..-+
T Consensus 285 ~~l~ 288 (392)
T 1zb1_A 285 QQLI 288 (392)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 299
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=35.67 E-value=1.3e+02 Score=29.98 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 84 eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
.++.+|.++.....+-.+..|-. .+.-+|..|++.|+|.||+..+-.|-+
T Consensus 275 ~~l~L~~~AI~sa~~yY~n~HvY---PYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 275 PAEELFKEAITVAKREYSDHHIY---PYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCcc---chhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 36777777777777777666643 577788899999999999888777633
No 300
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.43 E-value=81 Score=28.66 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHhhhhc--cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 205 HGNLESAESFFKGLQEE--EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 205 qG~y~eAe~l~~~aL~~--~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
.+...++..+|.-.... ...+..--..+|..+..+|+|.+|..+|++.++-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 56678999999888772 2233333457899999999999999999999875
No 301
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=34.98 E-value=2.5e+02 Score=28.07 Aligned_cols=85 Identities=12% Similarity=-0.022 Sum_probs=47.5
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhhcccC-----CCCCccc-cccch-----------------hHHHHHHHHH
Q 013549 229 ALSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFS-----DMNTLGS-CNMAL-----------------EEVALAATFA 285 (441)
Q Consensus 229 a~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~-----~~~~lg~-~~~~~-----------------~~~~~~al~n 285 (441)
..+++..+...|+|.||--.+..+.++..+..... +.+.+.. +...+ +......+..
T Consensus 14 l~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll~~ 93 (428)
T 2wm9_A 14 LDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQ 93 (428)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHHHH
Confidence 35667777888888888888876665432211100 1111100 00000 1111112334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 013549 286 LGQLEAHMGNFGDAEEILTRTLTKTEEL 313 (441)
Q Consensus 286 Lg~ly~~qG~y~eAe~l~~rAL~i~e~~ 313 (441)
....+..-+.|+.|.++|+..+.++|+.
T Consensus 94 ai~~f~kg~~~E~ai~~~k~L~~~ye~~ 121 (428)
T 2wm9_A 94 CADGLWKAERYELIADIYKLIIPIYEKR 121 (428)
T ss_dssp HHHHHHHTTCGGGHHHHHTTTHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 4556666777889999999999999986
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.70 E-value=59 Score=28.17 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhhc--cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 208 LESAESFFKGLQEE--EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 208 y~eAe~l~~~aL~~--~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
.+++..+|+-.... ...+..--..+|..+..+|+|.+|..+|++.++-
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 35577888777662 2223333356799999999999999999999875
No 303
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=34.37 E-value=48 Score=28.43 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKVG 322 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~va 322 (441)
.+..-|.+|..-|+++.|--+|-|...++-..+. .||+.-
T Consensus 42 ~llr~A~~y~~egd~e~AYily~R~~~L~~e~Ip-kHpdy~ 81 (146)
T 2xze_A 42 EIIRMASIYSEEGNIEHAFILYNKYITLFIEKLP-KHRDYK 81 (146)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGG-GSTTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcc-cCccch
Confidence 4556799999999999999999999999987775 599874
No 304
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=32.40 E-value=29 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
..+|..+..+|++++|..+|-+|+.++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999887643
No 305
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.07 E-value=71 Score=28.01 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhhc--cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 209 ESAESFFKGLQEE--EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 209 ~eAe~l~~~aL~~--~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
+++..+|+..... ...+..--..+|.++..+|+|.+|..+|++.++-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4577778777662 2223333457899999999999999999999875
No 306
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=31.04 E-value=47 Score=26.59 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 013549 284 FALGQLEAHMGNFGDAEEILTRTLTKT 310 (441)
Q Consensus 284 ~nLg~ly~~qG~y~eAe~l~~rAL~i~ 310 (441)
..+|..+..+|+++.|..+|-+||.++
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 479999999999999999998887654
No 307
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=31.03 E-value=63 Score=33.47 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcc
Q 013549 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDD 163 (441)
Q Consensus 84 eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~ 163 (441)
.|+..|++|++..++.-..+.+.....+.+++..|.--|+| |.+|-+. ...|.++
T Consensus 450 kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy------y~~AA~k-------------------~~yG~~e 504 (526)
T 2wb7_A 450 GAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY------YVNAARK-------------------ALNGDLE 504 (526)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH------HHHHHHH-------------------HHTTCHH
T ss_pred HHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH------HHHHHHH-------------------HhcCccH
Confidence 55555555555555555566677677777766665555543 2222111 1237888
Q ss_pred hhHHHHHHHHHHH
Q 013549 164 TSSVVADKCLQLC 176 (441)
Q Consensus 164 ~A~~l~~~~L~i~ 176 (441)
+|+.+..++-++-
T Consensus 505 qAe~l~~~A~~~~ 517 (526)
T 2wb7_A 505 QAKIDAEKAKEYS 517 (526)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887777765443
No 308
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=30.35 E-value=43 Score=25.42 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 112 LAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 112 ~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
-.+|..+..+|++++|..+|-+|+.++..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46788889999999999999999888754
No 309
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.26 E-value=74 Score=29.38 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhhc--cCCchHHHHHHHHHHHHccChHHHHHHHHHHHHH
Q 013549 208 LESAESFFKGLQEE--EGCTGSAALSYGEYLHATRNFLLAKKFYQKVIEV 255 (441)
Q Consensus 208 y~eAe~l~~~aL~~--~~~~~~~a~~~a~~~~~qG~y~eA~~ly~rAL~i 255 (441)
-+++..+|.-.... ...+..--..+|.++..+|+|.+|..+|++.+.-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 36777888877762 2223333457899999999999999999999875
No 310
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.91 E-value=1.4e+02 Score=30.31 Aligned_cols=72 Identities=7% Similarity=0.051 Sum_probs=50.7
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013549 230 LSYGEYLHATRNFLLAKKFYQKVIEVLAEQKDFSDMNTLGSCNMALEEVALAATFALGQLEAHMGNFGDAEEILTRTLTK 309 (441)
Q Consensus 230 ~~~a~~~~~qG~y~eA~~ly~rAL~i~~~~~~~~~~~~lg~~~~~~~~~~~~al~nLg~ly~~qG~y~eAe~l~~rAL~i 309 (441)
+.+-.+|.+.|+..-+..+. ++++-. . ..+.+.. .|....+...+-+|..+..+++|.+|++.+.+|+..
T Consensus 180 n~L~kiYFkl~~~~lckni~-k~i~~~----~--~~p~~~~---~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIF-KNFQPK----S--MLAHFNE---YQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHH-HTHHHH----C--CCSCGGG---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH-HHhccC----C--CCcChhh---CCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 44556899999999999998 555541 1 1111111 122224455679999999999999999999999988
Q ss_pred -HH
Q 013549 310 -TE 311 (441)
Q Consensus 310 -~e 311 (441)
.-
T Consensus 250 lcp 252 (455)
T 3t5v_B 250 LLN 252 (455)
T ss_dssp HHH
T ss_pred cCC
Confidence 44
No 311
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=28.49 E-value=1.5e+02 Score=30.17 Aligned_cols=48 Identities=6% Similarity=0.048 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 013549 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 84 eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
.++.+|++|..+..+..+..| -=.+.-+|..+++.++|.+|+..+-.+
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhh
Confidence 466677777776666666666 336777788888888888888877765
No 312
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=27.03 E-value=6e+02 Score=27.07 Aligned_cols=79 Identities=9% Similarity=0.050 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHh----h----CCC----CchHHHHHHHHHHHHHHhhchh
Q 013549 281 AATFALGQLEAHMGN---------FGDAEEILTRTLTKTEEL----F----GSH----HPKVGVVLTCLALMFRNKAMQE 339 (441)
Q Consensus 281 ~al~nLg~ly~~qG~---------y~eAe~l~~rAL~i~e~~----l----G~~----HP~va~~l~nLa~ly~~qG~~e 339 (441)
..+.|+|.+|..+|. ...|-.+|++|-.+++-+ + ..- .|.+..+|.+|......---++
T Consensus 128 ~vLfNlaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~ 207 (704)
T 2xs1_A 128 CVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFL 207 (704)
T ss_dssp HHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 346788877766543 578889999998887643 2 111 4556666665554332222222
Q ss_pred hh-----------hhhHHHHHHHHHHHHHhh
Q 013549 340 HS-----------SALLIQEGLYRRALEFLK 359 (441)
Q Consensus 340 eA-----------~~~~~Ae~ly~rAL~i~~ 359 (441)
+| +--.++-.+|..|.+.+.
T Consensus 208 Kai~~~~k~~liAkLa~~~~~~Y~~A~~~l~ 238 (704)
T 2xs1_A 208 KATRDKMKDAIIAKLANQAADYFGDAFKQCQ 238 (704)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHHc
Confidence 22 111234568888888875
No 313
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.48 E-value=1.3e+02 Score=30.24 Aligned_cols=56 Identities=7% Similarity=0.039 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 013549 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i 137 (441)
|+.-+.-++.|..........-++....+..-+|.+|..+|+|++|+...+.++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 44444444555443322222346777888888999999999999999888887643
No 314
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=25.58 E-value=2e+02 Score=25.61 Aligned_cols=59 Identities=14% Similarity=-0.026 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHHHHhcCCcch
Q 013549 106 WRGISLLAMSTLLYESGNYVEAIEKLQKVENFKNSI-LGVRVAAMEALAGLYLQLGQDDT 164 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~-lg~~~~al~~La~l~~~~G~~~~ 164 (441)
..++=+.-+|.++..+++|.+|.+.+..|+..++.. .+.+...+.-|.-+-+-+|+...
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 467778899999999999999999999999887653 12223344455555566777543
No 315
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.56 E-value=2.1e+02 Score=29.22 Aligned_cols=50 Identities=6% Similarity=0.100 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 013549 84 QGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVEN 136 (441)
Q Consensus 84 eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~ 136 (441)
.++.+|.++.....+-.+..|-. .+.-+|..|++.++|.||+..+-.+-+
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvY---PYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIY---PYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCcc---ceeecchhhhhcchHHHHHHHHHHHHH
Confidence 47778888887777777666643 677888899999999999988877633
No 316
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=24.98 E-value=1.4e+02 Score=30.79 Aligned_cols=42 Identities=5% Similarity=-0.130 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHhhch
Q 013549 297 GDAEEILTRTLTKTEELFGSHHPKVGVVLTCLALMFRNKAMQ 338 (441)
Q Consensus 297 ~eAe~l~~rAL~i~e~~lG~~HP~va~~l~nLa~ly~~qG~~ 338 (441)
++|.+.|++|+...++.-..+.|.-...+.+++..|.--|+|
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 579999999999999999999999999999999998877765
No 317
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=24.87 E-value=1.5e+02 Score=29.75 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhhccccCCCCCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 013549 82 YSQGMLVLEQCLSTQPSDGQLAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (441)
Q Consensus 82 y~eAl~~~eqaL~i~~~~~g~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i 137 (441)
|+.-+.-++.|..........-++....++.-+|.+|.-+|+|++|++..+.+++.
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 44555555555544332222346778888889999999999999999988887653
No 318
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.48 E-value=2e+02 Score=30.73 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKV 134 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ra 134 (441)
....|.-..+.|++.+|+.+|.-+
T Consensus 446 ~~~aA~~ae~~G~~~dAi~LY~La 469 (661)
T 2qx5_A 446 TEQAARRADEDGRIYDSILLYQLA 469 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHh
Confidence 345666788999999999999864
No 319
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.64 E-value=84 Score=24.09 Aligned_cols=31 Identities=23% Similarity=0.133 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhhh
Q 013549 111 LLAMSTLLYESGNYVEAIEKLQKVENFKNSI 141 (441)
Q Consensus 111 l~nLa~l~~~qG~y~eA~e~~~ral~i~~~~ 141 (441)
-..+|.=|.-.|+|+.|+.+|+.++.--..+
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3456777888899999999999886655444
No 320
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=23.43 E-value=1.5e+02 Score=29.82 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=29.9
Q ss_pred CCchhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 013549 102 LAESWRGISLLAMSTLLYESGNYVEAIEKLQKVENF 137 (441)
Q Consensus 102 ~~h~~~a~~l~nLa~l~~~qG~y~eA~e~~~ral~i 137 (441)
.-++....++.-+|.+|.-+|+|++|++..+.+++.
T Consensus 190 ~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 190 KGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp TTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 346778888888999999999999999988887653
No 321
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=23.17 E-value=2.1e+02 Score=23.85 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHH
Q 013549 285 ALGQLEAHMGNFGDAEEILTRTLTKTEELFGSHHPKV-GVVLTCLALMFRN 334 (441)
Q Consensus 285 nLg~ly~~qG~y~eAe~l~~rAL~i~e~~lG~~HP~v-a~~l~nLa~ly~~ 334 (441)
+.|.....+|+++++-....||..|.......=.++. +..-.||..+|..
T Consensus 41 ~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y 91 (131)
T 3iqc_A 41 SQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTH 91 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHH
Confidence 4455667789999999999999999998866666665 5778888899954
No 322
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=23.15 E-value=5.2e+02 Score=25.06 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhh----C----CCCchHHHHHHHHHHHHHHhhchhhh--
Q 013549 281 AATFALGQLEAHMG---------NFGDAEEILTRTLTKTEELF----G----SHHPKVGVVLTCLALMFRNKAMQEHS-- 341 (441)
Q Consensus 281 ~al~nLg~ly~~qG---------~y~eAe~l~~rAL~i~e~~l----G----~~HP~va~~l~nLa~ly~~qG~~eeA-- 341 (441)
..+.|+|.+|...| ..+.|-.+|++|-.+++-+. . +=+|.+...|.+|.....+---+++|
T Consensus 118 ~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~ 197 (363)
T 3rau_A 118 CILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMSRQILTLNVNLMLGQAQECLLEKSML 197 (363)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888886665 36789999999999886442 1 22344666666555543332222222
Q ss_pred ---------hhhHHHHHHHHHHHHHhhc
Q 013549 342 ---------SALLIQEGLYRRALEFLKA 360 (441)
Q Consensus 342 ---------~~~~~Ae~ly~rAL~i~~~ 360 (441)
+--.++-.+|++|.+.+..
T Consensus 198 ~~~k~~liAkLa~q~~~~Y~~a~~~l~~ 225 (363)
T 3rau_A 198 DNRKSFLVARISAQVVDYYKEACRALEN 225 (363)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1112344678888777753
No 323
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=22.28 E-value=75 Score=25.38 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhh
Q 013549 112 LAMSTLLYESGNYVEAIEKLQKVENFKNS 140 (441)
Q Consensus 112 ~nLa~l~~~qG~y~eA~e~~~ral~i~~~ 140 (441)
-.+|-.+..+|+++.|+.+|-+|+.++..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46888899999999999999999888754
No 324
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=21.77 E-value=1.1e+02 Score=27.37 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 013549 280 LAATFALGQLEAHMGNFGDAEEILTRTLTKTE 311 (441)
Q Consensus 280 ~~al~nLg~ly~~qG~y~eAe~l~~rAL~i~e 311 (441)
+.-..-+|..+..+++|.+|++.+.+|+...-
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCC
Confidence 34557899999999999999999999988643
No 325
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=21.66 E-value=3.9e+02 Score=26.14 Aligned_cols=147 Identities=10% Similarity=-0.028 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Q 013549 106 WRGISLLAMSTLLYESGNY---------VEAIEKLQKVENFKNSILGVRVAAMEALAGLYLQLGQDDTSSVVADKCLQLC 176 (441)
Q Consensus 106 ~~a~~l~nLa~l~~~qG~y---------~eA~e~~~ral~i~~~~lg~~~~al~~La~l~~~~G~~~~A~~l~~~~L~i~ 176 (441)
..+.++.|+|.+|..+|.. .+|..+|++| -|+-....++........-..|.......-...+.
T Consensus 140 E~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~A-------AG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l~ 212 (380)
T 3c3r_A 140 EKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFA-------SGAFLHIKETVLSALSREPTVDISPDTVGTLSLIM 212 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCSSCCCTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-------HHHHHHHHHhcccccCCCCCccCCHHHHHHHHHHH
Q ss_pred HhcC-CCcchhhhhhHhHHHHHHHHHHHHcCCHHHHHHHHHhhhh--------------ccCCchHHHHHHHHHHHHccC
Q 013549 177 EKHK-PENYKTYGAVNSRANAVKGLVELAHGNLESAESFFKGLQE--------------EEGCTGSAALSYGEYLHATRN 241 (441)
Q Consensus 177 ~~~~-~~~~~~~~~l~~~a~al~gl~~~~qG~y~eAe~l~~~aL~--------------~~~~~~~~a~~~a~~~~~qG~ 241 (441)
-.+- ...+..+..-..+...+..++....--|++|...+. +. ..-....+..-.|......++
T Consensus 213 LAQAQE~~~~Kai~~~~k~~liAkLa~~~~~~Y~~A~~~l~--~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k 290 (380)
T 3c3r_A 213 LAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQ--YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKK 290 (380)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHT--TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q ss_pred hHHHHHHHHHHHHHHHhhcc
Q 013549 242 FLLAKKFYQKVIEVLAEQKD 261 (441)
Q Consensus 242 y~eA~~ly~rAL~i~~~~~~ 261 (441)
|.+|+..++.|.+...+...
T Consensus 291 ~GeaIa~L~~A~~~l~~a~~ 310 (380)
T 3c3r_A 291 FGEEIARLQHAAELIKTVAS 310 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 326
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.88 E-value=3.4e+02 Score=23.48 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhhh--ccC------CchHHH-HHHHHHHHHccChHHHHHHHHHHHHHH
Q 013549 197 VKGLVELAHGNLESAESFFKGLQE--EEG------CTGSAA-LSYGEYLHATRNFLLAKKFYQKVIEVL 256 (441)
Q Consensus 197 l~gl~~~~qG~y~eAe~l~~~aL~--~~~------~~~~~a-~~~a~~~~~qG~y~eA~~ly~rAL~i~ 256 (441)
..++.++..|+|=+|-..++..-. ..+ ..+-+- ...|..+..+|+..-|..++++|+..+
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.16 E-value=1.6e+02 Score=32.83 Aligned_cols=71 Identities=10% Similarity=-0.075 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------HHhhCCCCc--hHHHHHHHHHHHHHHhhchhhhhhhHH
Q 013549 282 ATFALGQLEAHMGNFGDAEEILTRTLTKT-------------EELFGSHHP--KVGVVLTCLALMFRNKAMQEHSSALLI 346 (441)
Q Consensus 282 al~nLg~ly~~qG~y~eAe~l~~rAL~i~-------------e~~lG~~HP--~va~~l~nLa~ly~~qG~~eeA~~~~~ 346 (441)
..+-+|.+|...|++++|..+|++|=... ..++.+..+ .....|.++..++..++.|+.+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~v----- 916 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA----- 916 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHH-----
Confidence 34679999999999999999999874210 111111111 1234677888888888877765
Q ss_pred HHHHHHHHHHHh
Q 013549 347 QEGLYRRALEFL 358 (441)
Q Consensus 347 Ae~ly~rAL~i~ 358 (441)
..+-+.||...
T Consensus 917 -i~fA~lAI~~~ 927 (950)
T 4gq2_M 917 -LEFSLLADASK 927 (950)
T ss_dssp -HHHHHHHHHTC
T ss_pred -HHHHHHHHhhc
Confidence 67777777653
Done!