Query 013550
Match_columns 441
No_of_seqs 244 out of 800
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2638 UDP-glucose pyrophosph 100.0 1E-121 3E-126 914.8 36.5 433 5-441 32-495 (498)
2 PLN02474 UTP--glucose-1-phosph 100.0 1E-118 3E-123 930.2 43.4 439 3-441 3-469 (469)
3 PF01704 UDPGP: UTP--glucose-1 100.0 5E-103 1E-107 810.2 26.5 385 25-409 1-420 (420)
4 PLN02830 UDP-sugar pyrophospho 100.0 1.8E-93 4E-98 764.0 38.0 427 4-434 52-573 (615)
5 COG4284 UDP-glucose pyrophosph 100.0 7.9E-84 1.7E-88 660.0 33.6 424 5-438 28-472 (472)
6 cd00897 UGPase_euk Eukaryotic 100.0 1.3E-81 2.9E-86 624.4 27.9 264 77-340 1-265 (300)
7 PLN02435 probable UDP-N-acetyl 100.0 6.6E-75 1.4E-79 606.4 26.9 348 5-368 46-422 (493)
8 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 7E-68 1.5E-72 533.3 25.6 290 68-365 2-319 (323)
9 PTZ00339 UDP-N-acetylglucosami 100.0 1.5E-65 3.3E-70 537.0 29.5 352 5-368 22-413 (482)
10 cd06424 UGGPase UGGPase cataly 100.0 1.5E-65 3.2E-70 511.4 23.1 279 80-364 1-310 (315)
11 cd04180 UGPase_euk_like Eukary 100.0 2.4E-59 5.3E-64 460.3 26.6 227 80-309 1-241 (266)
12 KOG2388 UDP-N-acetylglucosamin 100.0 9E-57 1.9E-61 459.7 16.6 365 5-382 27-461 (477)
13 COG1207 GlmU N-acetylglucosami 99.5 3.1E-12 6.8E-17 131.0 19.0 291 79-440 2-311 (460)
14 PRK00844 glgC glucose-1-phosph 99.4 1.1E-11 2.3E-16 129.2 21.0 203 76-310 2-213 (407)
15 COG1208 GCD1 Nucleoside-diphos 99.4 9.1E-12 2E-16 127.9 19.0 178 80-305 2-184 (358)
16 PRK00725 glgC glucose-1-phosph 99.4 2.4E-11 5.1E-16 127.5 20.5 203 73-310 9-225 (425)
17 TIGR02092 glgD glucose-1-phosp 99.3 4.5E-11 9.8E-16 122.5 19.0 195 78-310 1-204 (369)
18 PRK05293 glgC glucose-1-phosph 99.3 2.1E-10 4.6E-15 117.9 21.3 197 78-310 2-206 (380)
19 TIGR01208 rmlA_long glucose-1- 99.3 3.7E-10 8E-15 115.1 19.5 177 82-307 2-182 (353)
20 PRK02862 glgC glucose-1-phosph 99.3 9.3E-10 2E-14 115.6 22.9 204 78-310 2-226 (429)
21 TIGR01105 galF UTP-glucose-1-p 99.2 2.9E-10 6.2E-15 114.1 17.6 197 79-307 3-225 (297)
22 PRK14352 glmU bifunctional N-a 99.2 4.3E-10 9.3E-15 119.6 19.8 185 78-310 3-192 (482)
23 PRK14359 glmU bifunctional N-a 99.2 5E-10 1.1E-14 116.7 19.9 180 79-310 2-181 (430)
24 PF00483 NTP_transferase: Nucl 99.2 3.6E-10 7.8E-15 108.6 15.5 182 82-309 2-192 (248)
25 PRK14356 glmU bifunctional N-a 99.2 1.2E-09 2.5E-14 115.0 20.5 182 79-310 5-190 (456)
26 PRK14358 glmU bifunctional N-a 99.2 1.2E-09 2.7E-14 116.3 19.5 176 78-302 6-184 (481)
27 TIGR02623 G1P_cyt_trans glucos 99.2 1.9E-09 4.1E-14 105.4 19.3 191 82-308 2-198 (254)
28 cd06425 M1P_guanylylT_B_like_N 99.2 1.1E-09 2.3E-14 105.1 17.1 181 81-308 2-187 (233)
29 cd06915 NTP_transferase_WcbM_l 99.2 1.1E-09 2.4E-14 103.0 16.8 175 82-307 1-180 (223)
30 cd06422 NTP_transferase_like_1 99.2 1.2E-09 2.7E-14 103.6 16.9 173 82-308 2-181 (221)
31 PRK15480 glucose-1-phosphate t 99.2 1.8E-09 3.8E-14 108.2 18.7 179 79-307 3-187 (292)
32 cd02538 G1P_TT_short G1P_TT_sh 99.2 1.4E-09 3E-14 104.7 16.8 179 81-309 2-185 (240)
33 cd04189 G1P_TT_long G1P_TT_lon 99.1 4.7E-09 1E-13 100.4 19.2 177 80-307 1-181 (236)
34 PRK14355 glmU bifunctional N-a 99.1 2.3E-09 5.1E-14 113.2 18.1 184 78-309 2-188 (459)
35 TIGR01207 rmlA glucose-1-phosp 99.1 2.3E-09 5E-14 107.0 16.9 175 82-306 2-182 (286)
36 PRK10122 GalU regulator GalF; 99.1 6E-09 1.3E-13 104.6 19.9 199 78-308 2-226 (297)
37 KOG1460 GDP-mannose pyrophosph 99.1 4.6E-09 9.9E-14 103.5 17.9 226 79-349 2-243 (407)
38 PRK14357 glmU bifunctional N-a 99.1 5.7E-09 1.2E-13 109.6 20.1 176 81-309 2-179 (448)
39 KOG1322 GDP-mannose pyrophosph 99.1 5E-09 1.1E-13 104.5 18.0 187 78-309 8-199 (371)
40 cd06428 M1P_guanylylT_A_like_N 99.1 5.1E-09 1.1E-13 102.1 17.6 181 82-308 1-191 (257)
41 PRK14360 glmU bifunctional N-a 99.1 1.3E-08 2.7E-13 106.9 21.8 183 80-310 2-187 (450)
42 cd04181 NTP_transferase NTP_tr 99.1 4.6E-09 9.9E-14 98.5 16.1 177 82-309 1-181 (217)
43 cd04197 eIF-2B_epsilon_N The N 99.1 3.1E-09 6.8E-14 101.1 14.4 156 81-276 2-177 (217)
44 cd06426 NTP_transferase_like_2 99.1 6.1E-09 1.3E-13 98.4 16.2 173 82-307 1-176 (220)
45 TIGR02091 glgC glucose-1-phosp 99.0 8.5E-09 1.8E-13 105.3 17.6 196 82-310 1-207 (361)
46 PLN02241 glucose-1-phosphate a 99.0 8.3E-09 1.8E-13 108.6 16.9 211 78-310 2-232 (436)
47 TIGR01173 glmU UDP-N-acetylglu 99.0 4.7E-08 1E-12 102.4 21.0 177 81-310 2-182 (451)
48 cd02524 G1P_cytidylyltransfera 99.0 5E-08 1.1E-12 95.0 18.9 193 82-307 1-199 (253)
49 cd02509 GDP-M1P_Guanylyltransf 98.9 3.3E-08 7.1E-13 98.0 15.6 193 81-311 2-209 (274)
50 cd02540 GT2_GlmU_N_bac N-termi 98.9 6.1E-08 1.3E-12 92.0 16.3 180 82-310 1-183 (229)
51 PRK09451 glmU bifunctional N-a 98.9 6.2E-08 1.3E-12 102.2 17.9 180 79-310 5-186 (456)
52 TIGR01099 galU UTP-glucose-1-p 98.9 8E-08 1.7E-12 93.5 16.9 203 81-308 2-214 (260)
53 cd02508 ADP_Glucose_PP ADP-glu 98.9 4.9E-08 1.1E-12 91.6 14.7 133 82-245 1-143 (200)
54 cd02523 PC_cytidylyltransferas 98.9 6.8E-08 1.5E-12 92.2 15.7 173 82-309 1-178 (229)
55 PRK14354 glmU bifunctional N-a 98.9 2.3E-07 4.9E-12 97.7 20.6 181 79-309 2-185 (458)
56 PRK14353 glmU bifunctional N-a 98.9 1.4E-07 2.9E-12 99.1 18.8 183 78-310 4-190 (446)
57 PRK05450 3-deoxy-manno-octulos 98.8 1E-07 2.3E-12 91.8 15.6 184 79-309 2-194 (245)
58 cd02541 UGPase_prokaryotic Pro 98.8 1.5E-07 3.2E-12 92.1 15.8 197 81-308 2-214 (267)
59 PRK13389 UTP--glucose-1-phosph 98.7 6.7E-07 1.4E-11 90.1 18.3 198 80-309 9-229 (302)
60 cd02517 CMP-KDO-Synthetase CMP 98.7 1.3E-06 2.9E-11 83.8 18.0 182 79-309 1-191 (239)
61 COG1209 RfbA dTDP-glucose pyro 98.6 1.3E-06 2.8E-11 85.8 15.7 173 82-305 3-181 (286)
62 TIGR01479 GMP_PMI mannose-1-ph 98.6 1.1E-06 2.4E-11 93.6 16.3 193 81-311 2-211 (468)
63 cd04183 GT2_BcE_like GT2_BcbE_ 98.6 4.7E-07 1E-11 86.3 12.2 173 82-309 1-182 (231)
64 cd04198 eIF-2B_gamma_N The N-t 98.6 1.2E-06 2.5E-11 83.4 14.2 131 81-251 2-139 (214)
65 COG0448 GlgC ADP-glucose pyrop 98.6 2.9E-06 6.4E-11 87.2 17.5 197 78-311 4-211 (393)
66 PRK13368 3-deoxy-manno-octulos 98.4 2.1E-05 4.6E-10 75.4 18.0 177 79-307 2-187 (238)
67 PF12804 NTP_transf_3: MobA-li 98.4 2.2E-06 4.7E-11 77.0 9.8 94 82-223 1-96 (160)
68 PLN02917 CMP-KDO synthetase 98.3 2.7E-05 5.9E-10 78.2 17.0 181 78-307 46-236 (293)
69 cd02507 eIF-2B_gamma_N_like Th 98.2 1.8E-05 3.9E-10 75.5 13.1 157 82-278 3-180 (216)
70 TIGR00454 conserved hypothetic 98.2 1.1E-05 2.4E-10 75.5 11.3 60 81-149 2-62 (183)
71 COG1213 Predicted sugar nucleo 98.1 6.7E-05 1.5E-09 72.5 14.7 67 80-152 4-70 (239)
72 cd02513 CMP-NeuAc_Synthase CMP 98.1 0.00014 3E-09 68.6 16.6 185 79-307 1-189 (223)
73 cd02516 CDP-ME_synthetase CDP- 98.1 3.7E-05 7.9E-10 72.6 11.9 41 80-121 1-41 (218)
74 cd04182 GT_2_like_f GT_2_like_ 98.1 2.3E-05 4.9E-10 71.5 9.8 57 80-145 1-57 (186)
75 TIGR00466 kdsB 3-deoxy-D-manno 97.9 0.00039 8.5E-09 67.5 16.0 179 82-310 2-195 (238)
76 TIGR03310 matur_ygfJ molybdenu 97.9 8.4E-05 1.8E-09 68.3 10.2 50 82-139 2-51 (188)
77 TIGR00453 ispD 2-C-methyl-D-er 97.9 0.00025 5.5E-09 67.0 13.0 40 81-121 1-40 (217)
78 PRK13385 2-C-methyl-D-erythrit 97.8 3.9E-05 8.5E-10 73.7 6.3 66 80-150 3-68 (230)
79 cd02503 MobA MobA catalyzes th 97.8 0.00021 4.5E-09 65.5 10.8 49 81-138 2-50 (181)
80 TIGR02665 molyb_mobA molybdopt 97.8 0.00032 6.9E-09 64.6 11.8 39 80-120 1-39 (186)
81 PRK09382 ispDF bifunctional 2- 97.7 0.00052 1.1E-08 71.4 13.4 43 78-121 4-46 (378)
82 PRK14489 putative bifunctional 97.7 0.0002 4.2E-09 74.1 10.2 42 77-120 3-44 (366)
83 PF01128 IspD: 2-C-methyl-D-er 97.7 7.2E-05 1.5E-09 72.3 6.4 64 80-149 1-65 (221)
84 PRK15460 cpsB mannose-1-phosph 97.7 0.0013 2.7E-08 70.5 16.3 194 80-312 6-221 (478)
85 PLN02728 2-C-methyl-D-erythrit 97.7 7.6E-05 1.7E-09 73.4 6.5 67 77-149 22-89 (252)
86 COG0746 MobA Molybdopterin-gua 97.6 0.00053 1.1E-08 64.8 10.4 107 78-238 3-110 (192)
87 COG2266 GTP:adenosylcobinamide 97.5 0.00019 4.2E-09 66.4 6.2 61 81-150 2-62 (177)
88 PRK02726 molybdopterin-guanine 97.5 0.00041 8.9E-09 65.5 8.4 40 79-121 7-46 (200)
89 TIGR03202 pucB xanthine dehydr 97.5 0.00057 1.2E-08 63.4 9.0 50 81-138 2-51 (190)
90 COG0836 {ManC} Mannose-1-phosp 97.4 0.0077 1.7E-07 60.9 16.6 197 80-312 2-214 (333)
91 PRK00560 molybdopterin-guanine 97.4 0.00027 5.9E-09 66.6 5.8 41 78-121 7-48 (196)
92 PRK00155 ispD 2-C-methyl-D-ery 97.3 0.0004 8.7E-09 66.3 6.2 42 79-121 3-44 (227)
93 PRK00317 mobA molybdopterin-gu 97.1 0.00058 1.3E-08 63.6 4.4 40 78-119 2-41 (193)
94 PRK14490 putative bifunctional 96.9 0.0017 3.6E-08 67.3 6.3 41 78-121 173-213 (369)
95 COG1211 IspD 4-diphosphocytidy 96.8 0.0024 5.2E-08 62.0 6.1 66 78-148 3-68 (230)
96 PRK14500 putative bifunctional 96.7 0.0017 3.7E-08 66.8 4.5 40 79-121 160-199 (346)
97 cd02518 GT2_SpsF SpsF is a gly 96.6 0.025 5.4E-07 54.2 11.6 60 82-149 2-62 (233)
98 COG4750 LicC CTP:phosphocholin 96.3 0.0056 1.2E-07 57.7 5.0 60 82-149 3-65 (231)
99 TIGR03584 PseF pseudaminic aci 96.2 0.24 5.2E-06 47.6 16.1 180 82-306 2-185 (222)
100 COG1210 GalU UDP-glucose pyrop 94.8 0.042 9E-07 54.6 5.1 177 82-306 7-217 (291)
101 COG2068 Uncharacterized MobA-r 92.9 0.13 2.9E-06 48.8 4.5 52 78-138 4-56 (199)
102 PF14134 DUF4301: Domain of un 89.4 1.9 4.2E-05 46.2 9.3 119 93-225 161-295 (513)
103 KOG4042 Dynactin subunit p27/W 81.5 1.8 3.8E-05 39.6 3.7 53 379-432 6-58 (190)
104 KOG1462 Translation initiation 80.2 0.8 1.7E-05 47.7 1.2 68 79-152 9-79 (433)
105 COG1212 KdsB CMP-2-keto-3-deox 70.0 17 0.00037 35.6 7.2 83 79-168 3-105 (247)
106 PF00535 Glycos_transf_2: Glyc 65.6 79 0.0017 26.7 10.2 164 102-307 4-168 (169)
107 PF02348 CTP_transf_3: Cytidyl 64.7 24 0.00052 32.9 7.2 34 82-121 2-37 (217)
108 COG1861 SpsF Spore coat polysa 59.0 27 0.00059 34.1 6.3 63 79-151 3-68 (241)
109 COG0663 PaaY Carbonic anhydras 47.6 29 0.00062 32.6 4.4 46 391-437 21-67 (176)
110 TIGR02287 PaaY phenylacetic ac 40.8 38 0.00081 32.0 4.2 22 395-416 22-43 (192)
111 PF07959 Fucokinase: L-fucokin 39.0 1.3E+02 0.0029 31.8 8.4 104 203-310 43-159 (414)
112 PF06258 Mito_fiss_Elm1: Mitoc 38.4 1.4E+02 0.0031 30.3 8.3 69 79-160 146-214 (311)
113 cd04645 LbH_gamma_CA_like Gamm 37.8 52 0.0011 29.3 4.4 16 400-415 39-54 (153)
114 PLN02472 uncharacterized prote 37.1 38 0.00082 33.4 3.7 37 393-430 71-107 (246)
115 cd00208 LbetaH Left-handed par 36.1 46 0.001 25.0 3.4 18 398-415 17-34 (78)
116 COG1535 EntB Isochorismate hyd 35.9 2.1E+02 0.0046 27.3 8.1 98 106-223 48-153 (218)
117 TIGR02180 GRX_euk Glutaredoxin 35.7 98 0.0021 23.8 5.3 70 115-208 12-83 (84)
118 PRK13627 carnitine operon prot 35.3 48 0.0011 31.3 4.0 38 392-430 21-58 (196)
119 PF04519 Bactofilin: Polymer-f 35.1 48 0.001 27.4 3.5 15 396-410 11-25 (101)
120 cd04745 LbH_paaY_like paaY-lik 30.4 70 0.0015 28.6 4.0 12 397-408 16-27 (155)
121 PHA03050 glutaredoxin; Provisi 28.9 1.8E+02 0.0038 24.7 6.1 49 139-211 53-101 (108)
122 COG0641 AslB Arylsulfatase reg 28.1 1E+02 0.0022 32.3 5.3 116 95-225 121-240 (378)
123 COG1664 CcmA Integral membrane 26.8 86 0.0019 28.5 3.9 42 392-435 28-71 (146)
124 COG0110 WbbJ Acetyltransferase 25.8 94 0.002 28.2 4.2 11 399-409 130-140 (190)
125 PRK10063 putative glycosyl tra 25.6 5.7E+02 0.012 24.6 9.8 48 103-151 8-55 (248)
126 cd04646 LbH_Dynactin_6 Dynacti 24.9 1E+02 0.0022 28.0 4.1 20 396-415 14-33 (164)
127 cd04652 LbH_eIF2B_gamma_C eIF- 24.9 94 0.002 24.3 3.4 40 396-440 36-75 (81)
128 cd05824 LbH_M1P_guanylylT_C Ma 24.0 68 0.0015 25.1 2.5 9 424-432 43-51 (80)
129 cd05636 LbH_G1P_TT_C_like Puta 23.4 80 0.0017 28.3 3.1 6 403-408 63-68 (163)
130 PF04519 Bactofilin: Polymer-f 23.2 1E+02 0.0023 25.4 3.6 36 397-432 61-97 (101)
131 KOG1461 Translation initiation 23.1 89 0.0019 34.9 3.8 67 78-152 23-93 (673)
132 cd00710 LbH_gamma_CA Gamma car 22.8 1.4E+02 0.0031 27.0 4.7 31 400-430 43-73 (167)
133 cd06442 DPM1_like DPM1_like re 22.2 5.8E+02 0.013 23.0 9.3 46 102-150 3-48 (224)
134 PF13054 DUF3915: Protein of u 21.5 36 0.00078 28.9 0.4 22 389-411 50-71 (116)
135 PRK10824 glutaredoxin-4; Provi 21.4 3.3E+02 0.0071 23.6 6.4 47 141-211 56-102 (115)
136 PF05899 Cupin_3: Protein of u 21.1 1.1E+02 0.0024 24.1 3.1 23 406-428 30-52 (74)
137 TIGR02189 GlrX-like_plant Glut 21.0 3.3E+02 0.0072 22.5 6.2 21 191-211 73-93 (99)
138 KOG2963 RNA-binding protein re 20.1 39 0.00085 35.0 0.4 27 115-141 115-147 (405)
139 cd00761 Glyco_tranf_GTA_type G 20.1 4.7E+02 0.01 21.0 8.0 45 102-150 3-47 (156)
No 1
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-121 Score=914.83 Aligned_cols=433 Identities=61% Similarity=0.997 Sum_probs=417.3
Q ss_pred HHHHHHHHHHhh-hhcccCHhHHHHHHHHHHHHhccCCCCccCCccccCCCCCcccCCCCCCCCCChhhHHhhcCCeEEE
Q 013550 5 AEKLTQLKSAVA-GLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVL 83 (441)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~l~~~~~~~~~g~~~l~kvavv 83 (441)
+++++++.++.+ ..++.++.+++.|.++|+||+.+....++|++|+||+++.+++|++++.. +.+.++|+|+||+
T Consensus 32 k~~l~~l~~~~~~~~k~~~~~e~~~F~~Lf~RyL~~~~~~~~wdkI~~p~~d~vv~y~~i~~~----~~~~~~L~KLavl 107 (498)
T KOG2638|consen 32 KNELDKLLSTSEPEDKNHFKTELSGFFNLFSRYLREKAPTIDWDKIRPPPEDAVVPYDDIKNV----ELSKSLLNKLAVL 107 (498)
T ss_pred HHHHHhccccCchhhhhcchhhHHHHHHHHHHHHhccCCccchhhccCCChhhccccccccch----hhHHHhhhheEEE
Confidence 566777777663 33456789999999999999999989999999999999999999999742 6778999999999
Q ss_pred EEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEEeec
Q 013550 84 KLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQS 163 (441)
Q Consensus 84 ~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~Q~ 163 (441)
+||||+||.|||.+||++++|++|.||||+.++||+.|+++|++++|+++||||+|+++|.+++++|.+++++|++|.|+
T Consensus 108 KLNGGlGttmGc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~kv~i~TF~QS 187 (498)
T KOG2638|consen 108 KLNGGLGTTMGCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSKVDIKTFNQS 187 (498)
T ss_pred EecCCcCCccccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCcccCC-CCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHHcCCc
Q 013550 164 QYPRLCADDFVPLPC-KGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNE 242 (441)
Q Consensus 164 ~~P~~~~~~~~~l~~-~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~ 242 (441)
++|+++.|+++|++. .+++...+||||||||+|.+|+.||+||+|+++|+||+||+|+|||||++|+.+|.+++.++++
T Consensus 188 ~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ILn~~i~~~~e 267 (498)
T KOG2638|consen 188 KYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNILNHVINNNIE 267 (498)
T ss_pred cCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHHHHHHhcCCCc
Confidence 999999999999987 4556789999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhcccCcccccccc
Q 013550 243 YCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 322 (441)
Q Consensus 243 ~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~~~~lp~~vn~K 322 (441)
|+|||++||.+|.|||+++.++|+++++||+|+|++++++|++..+|++|||||+|++|.++++++++..+.|++|+|+|
T Consensus 268 y~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~kkFkifNTNNlWinLkavKrlve~~~l~meIi~N~k 347 (498)
T KOG2638|consen 268 YLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWINLKAVKKLVEENALNMEIIVNPK 347 (498)
T ss_pred eEEEecccchhhcccceEEeecCEEEEEEeccCChhHhhhhccceeEEEeccCCeEEehHHHHHHhhcCcccceeecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCCcceeehhhhhhH----------------------------hhhhhccccCeeEeccCcCCCCCCeEEeCCCcc
Q 013550 323 EVD-GIKVLQLETAAGAAI----------------------------RSDLYTLADGFVTRNEARKNPANPTIELGPEFK 373 (441)
Q Consensus 323 ~i~-~~~~iqlEta~g~ai----------------------------~sDly~~~~~~l~~~~~r~~~~~P~i~L~~~f~ 373 (441)
+++ +.+++|||||+|+|| +||||.+++|.|.+.|.|.++++|+|+||++|+
T Consensus 348 ti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld~Gsl~l~~~r~~~t~P~vkLg~~F~ 427 (498)
T KOG2638|consen 348 TIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLDNGSLTLSPSRFGPTPPLVKLGSEFK 427 (498)
T ss_pred hccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeeccCCeEEechhhcCCCCCeeecchhhh
Confidence 999 899999999999999 999999999999999999999999999999999
Q ss_pred chhhHhhccCCCCceeeeceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeeccceecCCCCC
Q 013550 374 KVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 441 (441)
Q Consensus 374 ~v~~~~~r~~~~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~~~~~~~~~~~ 441 (441)
++++|..||++||+|++|+||||+||||||+||+|+|||+|.|++|.+|+||||+||||++|+||++|
T Consensus 428 kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~gn~~i 495 (498)
T KOG2638|consen 428 KVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVSGNLRI 495 (498)
T ss_pred HHHHHHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=1.3e-118 Score=930.23 Aligned_cols=439 Identities=90% Similarity=1.352 Sum_probs=416.4
Q ss_pred chHHHHHHHHHHhhhhcccCHhHHHHHHHHHHHHhccCCCCccCCccccCCCCCcccCCCCCCCCCChhhHHhhcCCeEE
Q 013550 3 TDAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVV 82 (441)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~l~~~~~~~~~g~~~l~kvav 82 (441)
+...++.++...+..+...+..+++.|.++|+||++++++.|+|++|+|++++.+++|++++..+......+++|+|+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~L~k~av 82 (469)
T PLN02474 3 TADEKLPQLRSAVAGLDQISENEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEVVVPYDKLAPVPEDPEETKKLLDKLVV 82 (469)
T ss_pred chhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhCCCCeecHHHccCCchhhCcChhhccccccchhHHHHHHhcEEE
Confidence 33444556666666777777899999999999999999899999999999999999999997654444567889999999
Q ss_pred EEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEEee
Q 013550 83 LKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQ 162 (441)
Q Consensus 83 v~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~Q 162 (441)
|+|||||||||||++|||+++|++|+||||++++||++++++||+.|||+||||+.||++|++||++|++++++|++|+|
T Consensus 83 lkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~~~i~~F~Q 162 (469)
T PLN02474 83 LKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSNIEIHTFNQ 162 (469)
T ss_pred EEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCccceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHHcCCc
Q 013550 163 SQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNE 242 (441)
Q Consensus 163 ~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~ 242 (441)
+++||++.+|++|++++......+|+|+||||+|.||++||+|++|+++|+||+||+|+|||++++||.|+||+++++++
T Consensus 163 ~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~~~~~e 242 (469)
T PLN02474 163 SQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLIQNKNE 242 (469)
T ss_pred CceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHHhcCCc
Confidence 99999999999999876444678899999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhcccCcccccccc
Q 013550 243 YCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 322 (441)
Q Consensus 243 ~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~~~~lp~~vn~K 322 (441)
|+|||++|+.+|+|||++|.++|+++++||+|+|++++++|++..+|++||||||||++++|+++++...+.++.|+|+|
T Consensus 243 ~~~ev~~Kt~~d~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~~~~~l~~~~I~n~k 322 (469)
T PLN02474 243 YCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 322 (469)
T ss_pred eEEEEeecCCCCCCccEEEEECCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHhhcCCCCceeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987778899999999
Q ss_pred ccCCCCcceeehhhhhhH----------------------------hhhhhccccCeeEeccCcCCCCCCeEEeCCCccc
Q 013550 323 EVDGIKVLQLETAAGAAI----------------------------RSDLYTLADGFVTRNEARKNPANPTIELGPEFKK 374 (441)
Q Consensus 323 ~i~~~~~iqlEta~g~ai----------------------------~sDly~~~~~~l~~~~~r~~~~~P~i~L~~~f~~ 374 (441)
++++.+++||||+||+|| |||+|.++++++.++|+|..+..|.|+|+|.|++
T Consensus 323 ~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~~l~~~~~~~~~~~p~IeL~~~f~~ 402 (469)
T PLN02474 323 EVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGFVIRNKARTNPSNPSIELGPEFKK 402 (469)
T ss_pred CCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccCeEEecCcccCCCCCcEEECccccc
Confidence 999999999999999999 9999999999999999998888999999999999
Q ss_pred hhhHhhccCCCCceeeeceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeeccceecCCCCC
Q 013550 375 VGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 441 (441)
Q Consensus 375 v~~~~~r~~~~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~~~~~~~~~~~ 441 (441)
+++|++||+++|||++||||||+||||||+||+|+|+|+|+|++|++++||||++|||++|+||+|+
T Consensus 403 v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~~~~~~~~~ 469 (469)
T PLN02474 403 VANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVLENKDINGPEDL 469 (469)
T ss_pred HHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEecceeecccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 3
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=5.2e-103 Score=810.21 Aligned_cols=385 Identities=51% Similarity=0.856 Sum_probs=346.2
Q ss_pred HHHHHHHHHHHHhcc-CCCCccCCccccCCCCCcccCCCCCCCCCChhhHHhhcCCeEEEEEcCCCCCcCCCCCCcccee
Q 013550 25 EKNGFINLVARYLSG-EAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIE 103 (441)
Q Consensus 25 ~~~~f~~~~~~~~~~-~~~~~~~~~i~p~~~~~~~~~~~l~~~~~~~~~g~~~l~kvavv~LaGGlGTRLG~~~PK~~l~ 103 (441)
+++.|.++|+||+++ .++.++|++|+|++++++.+|++++...-....+..+++|+|||+||||||||||+++|||+++
T Consensus 1 e~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~ 80 (420)
T PF01704_consen 1 ELDSFFSLFRRYLSESKSHQIDWDKIMPPPPEEVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIP 80 (420)
T ss_dssp HHHHHHHHHHHHHHCCCCCS--GGGEEE-GTGCEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSE
T ss_pred ChHHHHHHHHHHHHhcccCCcccccCCCCChhhcCChhHhcccccccchhHHhhCCEEEEEEcCcccCccCCCCCCccee
Confidence 578999999999998 6789999999999999999998886321012346677899999999999999999999999999
Q ss_pred eCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEEeeccceeeecCCCcccCCCC-CC
Q 013550 104 VRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKG-KT 182 (441)
Q Consensus 104 v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~-~~ 182 (441)
|++|+||||++++|+++++++||+.|||+||||+.||++|++||++|.+++.+|++|+|+++||++.+|+++++++. ++
T Consensus 81 v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~ 160 (420)
T PF01704_consen 81 VREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDS 160 (420)
T ss_dssp EETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEES
T ss_pred cCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999998887777999999999999999999999863 11
Q ss_pred -CccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHHcCCcceEEEeeeccCCccceEEE
Q 013550 183 -DKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLI 261 (441)
Q Consensus 183 -~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~ 261 (441)
...+|+|+||||+|.||++||+|++|+++|+||+||+|+|||++++||.+|||+++++++|+||||+|+.++++||++|
T Consensus 161 ~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~lG~~~~~~~~~~~evv~Kt~~dek~Gvl~ 240 (420)
T PF01704_consen 161 IAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVFLGYMIEKNADFGMEVVPKTSPDEKGGVLC 240 (420)
T ss_dssp EEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHHHHHHHHTT-SEEEEEEE-CSTTTSSEEEE
T ss_pred cchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHHHHHHHhccchhheeeeecCCCCCceeEEE
Confidence 2357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhcccCccccccccccC----CCCcceeehhhh
Q 013550 262 SYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD----GIKVLQLETAAG 337 (441)
Q Consensus 262 ~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~~~~lp~~vn~K~i~----~~~~iqlEta~g 337 (441)
+++|+++++||+|+|++++++|++..+|.+|||||+||++++|+++++...+.||+|+|+|++| +.+++||||+||
T Consensus 241 ~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~ 320 (420)
T PF01704_consen 241 RYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQFETAIG 320 (420)
T ss_dssp EETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEEECGGG
T ss_pred EeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEeehhhhh
Confidence 9999999999999999999999999999999999999999999999998889999999999994 778999999999
Q ss_pred hhH----------------------------hhhhhccccCeeEeccCcCCCCCCeEEeCCCccchhhHhhccCCCCcee
Q 013550 338 AAI----------------------------RSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSII 389 (441)
Q Consensus 338 ~ai----------------------------~sDly~~~~~~l~~~~~r~~~~~P~i~L~~~f~~v~~~~~r~~~~p~i~ 389 (441)
++| |||+|.++++.+++++.|..+..|+|+||++|+++++|++||+++|||+
T Consensus 321 ~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd~y~~~~~~~~~~~~~~~~~~p~i~lg~~f~~v~~~~~r~~~ip~l~ 400 (420)
T PF01704_consen 321 FAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSDLYDLDDGTLVRNPLRAFHTRPLIKLGDHFKKVDDFEKRFPSIPSLL 400 (420)
T ss_dssp GGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHSTTEEEETTEEEEHCCHCSSCHHEEEECGGGSSHHHHHHHBSSS-BET
T ss_pred chHhhccCcEEEEEcHHHcCCccccCcceeeccceeccccceeeecccccCCCCCeeccCcccCchHHhhhhcCCCCCcc
Confidence 999 9999999999999999999888999999999999999999999999999
Q ss_pred eeceEEEeeeeEECcceEEE
Q 013550 390 ELDSLKVTGDVWFGANITLK 409 (441)
Q Consensus 390 ~~~~L~v~Gdv~fg~~v~l~ 409 (441)
+|+||+|+|||+||+||+||
T Consensus 401 ~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 401 ELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp TEEEEEEESSEEE-TT-EEE
T ss_pred cCCcceEecceEECCCcEeC
Confidence 99999999999999999997
No 4
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=1.8e-93 Score=763.98 Aligned_cols=427 Identities=21% Similarity=0.234 Sum_probs=382.7
Q ss_pred hHHHHHHHHHHhhhhcccCHhHHHHHHHHHHHHhccC-CCCccCCcccc-CCCCCcccCCCCCCCCCChhhHHhhcCCeE
Q 013550 4 DAEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGE-AQHVEWSKIQT-PTDKIVVPCDSLAPVPEDPAETKKLLDKLV 81 (441)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~i~p-~~~~~~~~~~~l~~~~~~~~~g~~~l~kva 81 (441)
+.+++++|++++..++..|++++..|++.+.+++.++ ++.++|++|+| +|++...+|++.+ ...+++.|+++|+|+|
T Consensus 52 ~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~~~l~~s~~~~~~~~~i~P~vp~~~~~~~~~~~-~~~~~~~Gl~~l~kva 130 (615)
T PLN02830 52 DDDDKRRLLEQVARLDESYPGGLAAYVSNAKELLADSKEGVNPFEGWTPSVPEGEVLEYGSEE-FVELEEAGLREAGNAA 130 (615)
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccCCCchhhcccCCCccccccccchh-hhHHHHHHHHHhCcEE
Confidence 3578899999999999999999999999999999976 67999999999 4667777787753 3345678999999999
Q ss_pred EEEEcCCCCCcCCCCCCccceee--CCCCchHHHHHHHHHHHhh-------hhCCCcCEEEeeCCCChhHHHHHHHHhCC
Q 013550 82 VLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA-------KYGCNVPLLLMNSFNTHDDTSKIIEKYSK 152 (441)
Q Consensus 82 vv~LaGGlGTRLG~~~PK~~l~v--~~gktfLdl~~~qi~~l~~-------~~g~~iPl~IMtS~~T~e~T~~~l~~~~~ 152 (441)
||+||||||||||+++||++||+ ++|+||||++++||+++++ .+++.|||+||||++||++|++||++|++
T Consensus 131 vllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~ 210 (615)
T PLN02830 131 FVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDY 210 (615)
T ss_pred EEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCc
Confidence 99999999999999999999998 8999999999999999864 46789999999999999999999999988
Q ss_pred C---CCceEEEeeccceeeecC-CCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-cccc
Q 013550 153 S---NVEIHTFNQSQYPRLCAD-DFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAI 227 (441)
Q Consensus 153 ~---~~~i~~f~Q~~~P~~~~~-~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~ 227 (441)
| +.+|++|+|+++||++.+ ++++++. .++++++|+|+||||+|.||++||+|++|+++|+||+||+|+|| |+..
T Consensus 211 FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~-~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~ 289 (615)
T PLN02830 211 FGMDPDQVTLLKQEKVACLMDNDARLALDP-NDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFK 289 (615)
T ss_pred cCCCccceEEEEcCcceeEecCCCcccccC-CCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhc
Confidence 5 578999999999999976 5666654 23489999999999999999999999999999999999999999 9999
Q ss_pred ccHHHHHHHHHcCCcceEEEeeeccCCccceEEEE---eCCe--eEEEEeecCChhhhhhh------ccCCCcceE--EE
Q 013550 228 VDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLIS---YEGK--VQLLEIAQVPDEHVNEF------KSIEKFKIF--NT 294 (441)
Q Consensus 228 ~Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~---~~g~--~~lvEysq~~~~~~~~~------~~~~~~~~f--Nt 294 (441)
+||.|||||++++++|+|+||+| .+.|++|++|+ .||+ +++|||+|+++...... .+...|++| ||
T Consensus 290 Adp~flG~~~~~~~d~~~kvv~K-~~~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNt 368 (615)
T PLN02830 290 AIPAALGVSATKGFDMNSLAVPR-KAKEAIGAIAKLTHKDGREMVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNI 368 (615)
T ss_pred ccHHHhHHHHhcCCceEEEEEEC-CCCcccceEEEEecCCCCeeeEEEeecccCHHHHhccCCCcccccccccccCCCCc
Confidence 99999999999999999999999 67899999998 5777 68899999876532221 123459999 99
Q ss_pred eeeeeeHHHHHHHHHhcccCccccccccccC-CCCcceeehhhhhhH---------------------------------
Q 013550 295 NNLWVNLKAIKRLVEADALKMEIIPNPKEVD-GIKVLQLETAAGAAI--------------------------------- 340 (441)
Q Consensus 295 nn~~~~l~~l~~~~~~~~~~lp~~vn~K~i~-~~~~iqlEta~g~ai--------------------------------- 340 (441)
||+|++|++|+++++++.+.||+|+|+|++| +.+++|+||+||++|
T Consensus 369 N~L~v~L~a~~~~l~~~~~~lp~ivNpK~~d~~~~v~q~~trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s~ 448 (615)
T PLN02830 369 NQLILKLGPYVKELAKTGGVIEEFVNPKYKDATKTAFKSPTRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPAD 448 (615)
T ss_pred eeeEeeHHHHHHHHHhCCCccceeccCcccCCCCceeecchHHHHHHHHHhhhcCcccccCceecCchheeccccCChHH
Confidence 9999999999999998889999999999999 778999999999998
Q ss_pred ------------------------------hhhhhccccCeeEeccCcCCCCCCeEEeCCCcc-chhhHhhcc-CCCCce
Q 013550 341 ------------------------------RSDLYTLADGFVTRNEARKNPANPTIELGPEFK-KVGNFLSRF-KSIPSI 388 (441)
Q Consensus 341 ------------------------------~sDly~~~~~~l~~~~~r~~~~~P~i~L~~~f~-~v~~~~~r~-~~~p~i 388 (441)
+||+|..+.+.....+.|..+..|.|.|+|.|+ ++++|++|| +++|+|
T Consensus 449 a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~~~~~~~~~~~P~I~L~p~f~~~~~~~~~k~~~~~~si 528 (615)
T PLN02830 449 GAAKVPEGNPTHSATSGEMAIYGANCLILRKAGADVEEPVEDVVFNGIEVEVGPRIVLKPAFALTFSELKKKVAPGSVKI 528 (615)
T ss_pred hhhhcccCCCccCcchhhHHHHHHHHHHHHhcCCccccCccccccCCcccCCCCeEEECchhhhHHHHHHHHhcCCCCcc
Confidence 556777777666566677777889999999999 999999999 999999
Q ss_pred eeeceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeeccce
Q 013550 389 IELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKE 434 (441)
Q Consensus 389 ~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~~~~ 434 (441)
+++|+|+|+|+++||+||.|+|+|+|.|++|++++| +|++++|+-
T Consensus 529 ~~~s~L~v~G~~~~~~~v~LdG~viI~a~~~~~~~i-~g~~v~N~g 573 (615)
T PLN02830 529 SQRSTLVLEGADIVIENLSLDGALVVRAVPGAEVTV-GGLRVKNKG 573 (615)
T ss_pred cCCCeEEEEeeeEEecCeEEEEEEEEEcCCCCeEEe-cCeEEecCC
Confidence 999999999999999999999999999999999999 999999963
No 5
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-84 Score=660.00 Aligned_cols=424 Identities=40% Similarity=0.613 Sum_probs=383.8
Q ss_pred HHHHHHHHHHhh-hhcccCHh--HHHHHHHHHHHHhccC--CCCccCCccccCCCCCcccCCCCCCCCCChhhHHhhcCC
Q 013550 5 AEKLTQLKSAVA-GLNQISEN--EKNGFINLVARYLSGE--AQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDK 79 (441)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~--~~~~f~~~~~~~~~~~--~~~~~~~~i~p~~~~~~~~~~~l~~~~~~~~~g~~~l~k 79 (441)
+++++++.+..+ ..++.++. .++.|..+|+||+.+. +..++|+.++|+.++.++.|++... +.+..+...++|
T Consensus 28 ~h~l~~l~~~s~~~~~~~~~~~~~~d~~f~l~~~~ll~~s~~s~~~~~ki~~~~~d~~~~~~~~~~--~~~~l~~~~~~k 105 (472)
T COG4284 28 EHLLDKLKQSSEKQALKSFEKLLLLDIFFFLFSRYLLNTSKASTQEWDKIRPPNPDDVVDYEKKIL--EGWGLLKIKLGK 105 (472)
T ss_pred HHHHHHhhhhchHHHHhhhhhhhhhHHHHHHHHHHHhhcCcccceeecccCCCChhhhccchhhcc--chhhhhhhhcCc
Confidence 667777777665 44566666 8999999999999974 3599999999999999988887753 222223345899
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCC---CCc
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS---NVE 156 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~---~~~ 156 (441)
+|||+||||||||||+++||++++|++|+||||++++||+.++++|+++|||+|||| .|+++|..+|+.++|+ +.+
T Consensus 106 lAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~ 184 (472)
T COG4284 106 LAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTS-LNTEETDSYFKSNDYFGLDKED 184 (472)
T ss_pred eEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999997774 678
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHH
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~ 236 (441)
|.+|+|+.+||+..++..|+.+..+++ ++|+|+||||+|.||+.||++++|.++|+||++|+|||||++++||.++|++
T Consensus 185 I~fF~Q~~~P~~~~~sg~~~~~~~~~~-~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~~lg~~ 263 (472)
T COG4284 185 IFFFVQSLFPRLLSDSGLPFLESDDSN-LAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLKFLGFM 263 (472)
T ss_pred eEEEecCCcceeecccCccccccCCcc-cccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHHHHHHH
Confidence 999999999987777766666553333 9999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhcccCcc
Q 013550 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~~~~lp 316 (441)
+.++++++||++.|+.|+++||+++.++|+++|+||+|+|++++++|++..++.+|||||+|+.+..++.+.+.....||
T Consensus 264 ~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~~~l~Lp 343 (472)
T COG4284 264 AETNYEYLMETTDKTKADEKVGILVTYDGKLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEAAYLNLP 343 (472)
T ss_pred HhcCcceeEEEeecccccccceEEEEeCCceEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHhhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred ccccccccCCC-CcceeehhhhhhH---h-----hhhhccc--c-CeeEeccCcCCCCCCeEEeCCC-ccchhhHhhccC
Q 013550 317 IIPNPKEVDGI-KVLQLETAAGAAI---R-----SDLYTLA--D-GFVTRNEARKNPANPTIELGPE-FKKVGNFLSRFK 383 (441)
Q Consensus 317 ~~vn~K~i~~~-~~iqlEta~g~ai---~-----sDly~~~--~-~~l~~~~~r~~~~~P~i~L~~~-f~~v~~~~~r~~ 383 (441)
+|.|.|+++-. .++|++|++|.+| + +|+|.+. + +.+...| |.....|++.++.+ |.++..+..+++
T Consensus 344 i~~a~Kki~~~~~~~~~~t~i~~~i~kfe~~FI~fDlF~~~s~~~~~~~~vp-R~~~f~Plkn~~~~~~~~~~~~~~~~~ 422 (472)
T COG4284 344 IHKAIKKIPQLDNIIQLTTAIGKNISKFENEFIPFDLFLYKSDENGGLLLVP-RFGEFSPLKNLEGSHFDNVETFTCGIP 422 (472)
T ss_pred chhhhcccCccccceeeccccccchhhccccccceeeeEEEecCCCceEecc-ccCCCCchhhccCCCCCcHHhhhcccc
Confidence 99999999944 6999999999998 4 8988877 4 6777888 76668899999555 999999999999
Q ss_pred CCCceeeeceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeeccceecCC
Q 013550 384 SIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGP 438 (441)
Q Consensus 384 ~~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~~~~~~~~ 438 (441)
.+|.++++++++|+|+|.||++|+++ .+.+...++||+|+++||++|.||
T Consensus 423 ~~~~~~e~~~~~is~nv~~~~~~~lk-----~~~e~~~l~~~~~s~~e~~ii~~~ 472 (472)
T COG4284 423 RIPLILELEGLTISGNVLFGRNVTLK-----YASENTSLCIPNKSFLENVIITGN 472 (472)
T ss_pred cccchhhhccceecCceEeeecceee-----ecCCCceEeccCCeeeeeeeEecC
Confidence 99999999999999999999999999 789999999999999999999986
No 6
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=1.3e-81 Score=624.41 Aligned_cols=264 Identities=70% Similarity=1.138 Sum_probs=255.0
Q ss_pred cCCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCc
Q 013550 77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (441)
Q Consensus 77 l~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~ 156 (441)
|+|+|||+||||||||||+++||+++||++|+||||++++||++++++||+.|||+||||+.||++|++||++|++.+.+
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~~~ 80 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNVD 80 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHH
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHL 236 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~ 236 (441)
|++|+|+++||++.+|+++++...++++++|+|+||||+|.||++||+|++|+++|+||+||+|+|||++++||.|||||
T Consensus 81 v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~~ 160 (300)
T cd00897 81 IHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHM 160 (300)
T ss_pred eEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHHH
Confidence 99999999999999999999833345899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhcccCcc
Q 013550 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~~~~lp 316 (441)
++++++|+||||+|+.++|+||++|.++|+++++||+|+|++++++|++..+|++||||||||++++|+++++...+.||
T Consensus 161 ~~~~~~~~~evv~Kt~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~~~~~~~~lp 240 (300)
T cd00897 161 VDNKAEYIMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVVEENALDLE 240 (300)
T ss_pred HhcCCceEEEEeecCCCCCcccEEEEECCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987778899
Q ss_pred ccccccccC-CCCcceeehhhhhhH
Q 013550 317 IIPNPKEVD-GIKVLQLETAAGAAI 340 (441)
Q Consensus 317 ~~vn~K~i~-~~~~iqlEta~g~ai 340 (441)
+|+|.|+++ +++++||||+||++|
T Consensus 241 ~h~~~K~v~p~~~~~qlE~~i~da~ 265 (300)
T cd00897 241 IIVNPKTVDGGLNVIQLETAVGAAI 265 (300)
T ss_pred eeecccccCCCCCEEEeHhHhhhHH
Confidence 999999998 688999999999988
No 7
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=6.6e-75 Score=606.38 Aligned_cols=348 Identities=19% Similarity=0.215 Sum_probs=295.0
Q ss_pred HHHHHHHHHHhhhhcccCHhHHHHHHHHHHHHhccCCCCccCCccccCCCCCcccCCCCCC--CCCChhhHHhhc--CCe
Q 013550 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAP--VPEDPAETKKLL--DKL 80 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~l~~--~~~~~~~g~~~l--~kv 80 (441)
.++.++|++++..+ +...+.+++++.+... .++|+.|+|++++...++++... ...+++.|.+++ +||
T Consensus 46 ~~e~~~L~~qL~~i------D~~~l~~~~~~~~~~~--~~~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkv 117 (493)
T PLN02435 46 PEERDLLVRDIESL------DLPRIDRIIRCSLRSQ--GLPVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKL 117 (493)
T ss_pred HHHHHHHHHHHHhc------CHHHHHHHHHHHhhcc--CCchhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCCE
Confidence 45667777777543 3444567777777432 46899999988777766655432 123446799998 899
Q ss_pred EEEEEcCCCCCcCCCCCCccceee--CCCCchHHHHHHHHHHHhh----------hhCCCcCEEEeeCCCChhHHHHHHH
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA----------KYGCNVPLLLMNSFNTHDDTSKIIE 148 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v--~~gktfLdl~~~qi~~l~~----------~~g~~iPl~IMtS~~T~e~T~~~l~ 148 (441)
|||+||||||||||+++||||++| ++++||||++++||+++++ .+++.|||+||||+.||++|++||+
T Consensus 118 avvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~ 197 (493)
T PLN02435 118 AVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFE 197 (493)
T ss_pred EEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHHHH
Confidence 999999999999999999999965 8999999999999998875 2468899999999999999999999
Q ss_pred HhCCC---CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-c
Q 013550 149 KYSKS---NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-L 224 (441)
Q Consensus 149 ~~~~~---~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L 224 (441)
+|++| +.+|++|+|+++||++.+|+++++++ ++++|+|+||||+|.||++||+|++|+++|++|+||+|+|| |
T Consensus 198 ~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~---~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 274 (493)
T PLN02435 198 SHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETP---FKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL 274 (493)
T ss_pred hCCCCCCCccceEEEecCCcceECCCCCcccCCC---cccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence 98875 57899999999999999999999876 79999999999999999999999999999999999999999 8
Q ss_pred cccccHHHHHHHHHcCCcceEEEeeeccCCccceEEEE--eCCeeEEEEeecCChhhhhhh---ccCCCcceEEEeeeee
Q 013550 225 GAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLIS--YEGKVQLLEIAQVPDEHVNEF---KSIEKFKIFNTNNLWV 299 (441)
Q Consensus 225 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~--~~g~~~lvEysq~~~~~~~~~---~~~~~~~~fNtnn~~~ 299 (441)
++++||.|||||+.++++|++|||+|+.|+|++|++|. .+|+++++||+|++++..+.. ++...|.++|||||||
T Consensus 275 ~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~f 354 (493)
T PLN02435 275 VRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMF 354 (493)
T ss_pred ccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchhhHHHhhc
Confidence 99999999999999999999999999999999999998 689999999999999876643 2556899999999999
Q ss_pred eHHHHHHHHHhcccCccccccccccC----CCCcceeehhhhhhHhhhhhccccCeeEeccCcCCCCCCeEEe
Q 013550 300 NLKAIKRLVEADALKMEIIPNPKEVD----GIKVLQLETAAGAAIRSDLYTLADGFVTRNEARKNPANPTIEL 368 (441)
Q Consensus 300 ~l~~l~~~~~~~~~~lp~~vn~K~i~----~~~~iqlEta~g~ai~sDly~~~~~~l~~~~~r~~~~~P~i~L 368 (441)
+++||+++.+.....||+|++.|+|| ..+.|+||+++ +|+|.+....+.....|.....|+..-
T Consensus 355 s~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~~ngiK~E~Fi-----FDvf~~a~~~~~~eV~R~~EFaPlKN~ 422 (493)
T PLN02435 355 TLDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFI-----FDAFPYAPSTALFEVLREEEFAPVKNA 422 (493)
T ss_pred cHHHHHHHHHhhhhcCCceeeccccCccCCCcceEEeeeee-----ecchhhcCceEEEEEchhhccCcccCC
Confidence 99999999876556799999999998 35699999984 555555555555555555555555444
No 8
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=7e-68 Score=533.26 Aligned_cols=290 Identities=24% Similarity=0.339 Sum_probs=259.5
Q ss_pred CChhhHHhhcC--CeEEEEEcCCCCCcCCCCCCccceee--CCCCchHHHHHHHHHHHhhhhC------CCcCEEEeeCC
Q 013550 68 EDPAETKKLLD--KLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNAKYG------CNVPLLLMNSF 137 (441)
Q Consensus 68 ~~~~~g~~~l~--kvavv~LaGGlGTRLG~~~PK~~l~v--~~gktfLdl~~~qi~~l~~~~g------~~iPl~IMtS~ 137 (441)
++++.|.++++ ++|+|+||||+|||||++.||+|+|| ++|+||||+++++|++++..++ +.+||+||||+
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~ 81 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSE 81 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcCh
Confidence 35678999996 99999999999999999999999998 5799999999999999998777 78999999999
Q ss_pred CChhHHHHHHHHhCCC---CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCc
Q 013550 138 NTHDDTSKIIEKYSKS---NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE 214 (441)
Q Consensus 138 ~T~e~T~~~l~~~~~~---~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~e 214 (441)
+||++|++||+++++| +++|++|.|+++||++.+|+++++++ ++++|+|+||||+|.||++||+|++|+++|+|
T Consensus 82 ~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~---~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~ 158 (323)
T cd04193 82 ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEK---GKIAMAPNGNGGLYKALQTAGILEDMKKRGIK 158 (323)
T ss_pred hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCC---CccccCCCCchHHHHHHHHCChHHHHHhCCCE
Confidence 9999999999998775 55899999999999999999999876 78999999999999999999999999999999
Q ss_pred EEEEEcCCc-ccccccHHHHHHHHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCc--ce
Q 013550 215 YVFAANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKF--KI 291 (441)
Q Consensus 215 yi~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~--~~ 291 (441)
|+||+|+|| |++++||.+|||++++++++++||++|+.++|++|++|..+|+++++||+|+|++..+.+.+...+ ..
T Consensus 159 yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~~~g~l~f~~ 238 (323)
T cd04193 159 YIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGKPQVVEYSEISDELAEKRDADGELQYNA 238 (323)
T ss_pred EEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCeEEEEEeecCCHHHHhccCcCCcEeccc
Confidence 999999999 899999999999999999999999999999999999999999999999999999999988655544 44
Q ss_pred EEEeeeeeeHHHHHHHHHhcccCccccccccccC------------CCCcceeehhhhhhHhhhhhccccCeeEeccCcC
Q 013550 292 FNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD------------GIKVLQLETAAGAAIRSDLYTLADGFVTRNEARK 359 (441)
Q Consensus 292 fNtnn~~~~l~~l~~~~~~~~~~lp~~vn~K~i~------------~~~~iqlEta~g~ai~sDly~~~~~~l~~~~~r~ 359 (441)
.|+|+|||++++|+++++.....||+|+|+|+++ +++++|||++++++| ...+..+.....|.
T Consensus 239 ~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~-----~~~~~~~~~eV~R~ 313 (323)
T cd04193 239 GNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVF-----PFAKNFVCLEVDRE 313 (323)
T ss_pred chHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHH-----HhCCceEEEEEChh
Confidence 4777778999999999987666899999999984 346899999987766 34466666666665
Q ss_pred CCCCCe
Q 013550 360 NPANPT 365 (441)
Q Consensus 360 ~~~~P~ 365 (441)
....|+
T Consensus 314 ~~F~Pv 319 (323)
T cd04193 314 EEFSPL 319 (323)
T ss_pred hccccC
Confidence 434454
No 9
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=1.5e-65 Score=537.02 Aligned_cols=352 Identities=18% Similarity=0.251 Sum_probs=288.1
Q ss_pred HHHHHHHHHHh-hhhcccCHhHHHHHHHHHHHHhcc---CC------CCccCCccccCCCCCcccCCCCC-CCCCChhhH
Q 013550 5 AEKLTQLKSAV-AGLNQISENEKNGFINLVARYLSG---EA------QHVEWSKIQTPTDKIVVPCDSLA-PVPEDPAET 73 (441)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~---~~------~~~~~~~i~p~~~~~~~~~~~l~-~~~~~~~~g 73 (441)
.++..+|..++ ..+.. .+.+.+.+++++.... .. ..+.-+.++|++++...+..+.+ ...++++.|
T Consensus 22 ~~e~~~l~~ql~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~G 98 (482)
T PTZ00339 22 EGEFTPLATQILSSLTN---VDFKHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEPPNNNTFIDIYEKEKERKELKESG 98 (482)
T ss_pred HHHHHHHHHHHHHHhhc---cCHHHHHHHHHHHhhhhhcccccccccccccccccCCCCcccccccccCHHHHHHHHHhH
Confidence 45666677766 44332 3444555555555432 11 12344678998876443333211 112355679
Q ss_pred HhhcC--CeEEEEEcCCCCCcCCCCCCccceeeC--CCCchHHHHHHHHHHHhhhh--------CCCcCEEEeeCCCChh
Q 013550 74 KKLLD--KLVVLKLNGGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENLNAKY--------GCNVPLLLMNSFNTHD 141 (441)
Q Consensus 74 ~~~l~--kvavv~LaGGlGTRLG~~~PK~~l~v~--~gktfLdl~~~qi~~l~~~~--------g~~iPl~IMtS~~T~e 141 (441)
.++|+ |+|||+||||+|||||++.||+|++|. +|+||||++++||+++++.+ ++.+||+||||++||+
T Consensus 99 l~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~ 178 (482)
T PTZ00339 99 LEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHD 178 (482)
T ss_pred HHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHH
Confidence 99994 699999999999999999999999984 89999999999999997644 4679999999999999
Q ss_pred HHHHHHHHhCCC---CCceEEEeeccceeeecC-CCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEE
Q 013550 142 DTSKIIEKYSKS---NVEIHTFNQSQYPRLCAD-DFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVF 217 (441)
Q Consensus 142 ~T~~~l~~~~~~---~~~i~~f~Q~~~P~~~~~-~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~ 217 (441)
.|++||++|++| +.+|++|.|+++||++.+ |++.++++ ++++|+|+||||+|.||++||+|++|+++|++|+|
T Consensus 179 ~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~---~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~ 255 (482)
T PTZ00339 179 QTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQ---GSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQ 255 (482)
T ss_pred HHHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCC---CceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEE
Confidence 999999998875 578999999999999975 77777765 78999999999999999999999999999999999
Q ss_pred EEcCCc-ccccccHHHHHHHHHcCC-cceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhh---hccCCCcceE
Q 013550 218 AANSDN-LGAIVDLKILNHLIQNKN-EYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNE---FKSIEKFKIF 292 (441)
Q Consensus 218 v~nvDN-L~~~~Dp~~lg~~~~~~~-~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~---~~~~~~~~~f 292 (441)
|+|+|| |++++||.||||++++++ +++.+|+ |+.++|++|++|+.+|+++++||+|++++..+. +++...|.++
T Consensus 256 v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~g 334 (482)
T PTZ00339 256 VISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYG 334 (482)
T ss_pred EEecCcccccccCHHHhHHHHHCCchhheeeee-cCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeeccccc
Confidence 999999 799999999999999999 7777777 889999999999999999999999998765543 3466788999
Q ss_pred EEeeeeeeHHHHHHHHHh-cccCccccccccccC--C-----CCcceeehhhhhhHhhhhhccccCeeEeccCcCCCCCC
Q 013550 293 NTNNLWVNLKAIKRLVEA-DALKMEIIPNPKEVD--G-----IKVLQLETAAGAAIRSDLYTLADGFVTRNEARKNPANP 364 (441)
Q Consensus 293 Ntnn~~~~l~~l~~~~~~-~~~~lp~~vn~K~i~--~-----~~~iqlEta~g~ai~sDly~~~~~~l~~~~~r~~~~~P 364 (441)
|||||||+++||++++++ ....||+|+|.|+|| . ++.|+||++ .+|+|.+.+..++....|.....|
T Consensus 335 nI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~~~png~K~E~F-----iFDvf~~~~~~~~~ev~R~~eFsP 409 (482)
T PTZ00339 335 NICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPTDKTMGIKLEAF-----IFDIFRYAKNVLILEVDREDEFAP 409 (482)
T ss_pred ceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCCCCcceeeehhh-----hhhHHHhccccceeeechhhcccc
Confidence 999999999999999864 345799999999998 1 268999998 678888888888888888877778
Q ss_pred eEEe
Q 013550 365 TIEL 368 (441)
Q Consensus 365 ~i~L 368 (441)
+-.-
T Consensus 410 lKNa 413 (482)
T PTZ00339 410 IKNA 413 (482)
T ss_pred ccCC
Confidence 6555
No 10
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=1.5e-65 Score=511.43 Aligned_cols=279 Identities=23% Similarity=0.216 Sum_probs=239.8
Q ss_pred eEEEEEcCCCCCcCCCCCCccceee--CCCCchHHHHHHHHHHHhh----hhCCCcCEEEeeCCCChhHHHHHHHHhCCC
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA----KYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v--~~gktfLdl~~~qi~~l~~----~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~ 153 (441)
+|||+||||||||||+++||++++| ++|+||||++++||+++++ .+++.|||+||||+.||++|++||++|++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yF 80 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYF 80 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCcc
Confidence 5899999999999999999999998 8999999999999999997 678999999999999999999999998875
Q ss_pred ---CCceEEEeeccceeee-cCCCcc--cCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccc
Q 013550 154 ---NVEIHTFNQSQYPRLC-ADDFVP--LPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGA 226 (441)
Q Consensus 154 ---~~~i~~f~Q~~~P~~~-~~~~~~--l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~ 226 (441)
+++|++|+|+++||++ .+|+++ ++++ ++++|+|+||||+|.||++||+|++|+++|+||+||+|+|| |++
T Consensus 81 Gl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~---~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 81 GLEKDQVHILKQEKVFCLIDNDAHLALDPDNT---YSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CCCcccEEEEecCceEEEecCCCCcccccCCC---CccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 5789999999999997 788874 4443 88999999999999999999999999999999999999999 999
Q ss_pred cccHHHHHHHHHcCCcceEEEeeeccCCccceEEEE---eCCeeEE--EEeecCChhhhhhhc------cCCCcceE--E
Q 013550 227 IVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLIS---YEGKVQL--LEIAQVPDEHVNEFK------SIEKFKIF--N 293 (441)
Q Consensus 227 ~~Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~---~~g~~~l--vEysq~~~~~~~~~~------~~~~~~~f--N 293 (441)
++||.++||+++++++++.+||+ +.|.|++|++|+ .||++++ |||+|++++..+... +..+|++| |
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~-~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gN 236 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVP-RKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGN 236 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEe-CCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCe
Confidence 99999999999999999999997 577899999998 5789988 999999998766432 13345544 9
Q ss_pred EeeeeeeHHHHHHHHHhcccCccccccccccCCC-----CcceeehhhhhhHhhhhhccccCeeEeccCcCCCCCC
Q 013550 294 TNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGI-----KVLQLETAAGAAIRSDLYTLADGFVTRNEARKNPANP 364 (441)
Q Consensus 294 tnn~~~~l~~l~~~~~~~~~~lp~~vn~K~i~~~-----~~iqlEta~g~ai~sDly~~~~~~l~~~~~r~~~~~P 364 (441)
||+|+|++++|.+++++....+|+|+|+|+.|++ +..||||+|.+.. ++|..........-.|.....|
T Consensus 237 i~~~~f~l~~~~~~l~~~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~--~~f~~~~~~~~~~~~r~~~fsP 310 (315)
T cd06424 237 INQLVFSLGPYMDELEKTKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIP--LLFEEDYRVGFTVLDRWLCFSP 310 (315)
T ss_pred eeeEEEeHHHHHHHHhhccccCeeeecCCcccCCCCeecCchHHHHHHHHHH--HhhcccceeEEEEEchhhcccc
Confidence 9999999999999999888899999999999943 3589999965532 2244455444444445433334
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=2.4e-59 Score=460.26 Aligned_cols=227 Identities=37% Similarity=0.486 Sum_probs=212.7
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeC--CCCchHHHHHHHHHHHhhhh--CCCcCEEEeeCCCChhHHHHHHHHhCCCCC
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVR--NGLTFLDLIVIQIENLNAKY--GCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~--~gktfLdl~~~qi~~l~~~~--g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~ 155 (441)
+|+|+||||+|||||++.||+++||. +|+||||++++||++++..+ ++.|||+||||++||++|++||++|+....
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~ 80 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNS 80 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCC
Confidence 68999999999999999999999984 89999999999999999877 899999999999999999999999885578
Q ss_pred ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccHHHHH
Q 013550 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILN 234 (441)
Q Consensus 156 ~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg 234 (441)
++++|+|+++||++.+|+..++.+ ++++|+|+||||+|.+|+.+|+|++|+++|++|+||+|+|| |+.++||.++|
T Consensus 81 ~v~~f~Q~~~P~~~~~~~~~~~~~---~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~lG 157 (266)
T cd04180 81 YVITFMQGKLPLKNDDDARDPHNK---TKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFIG 157 (266)
T ss_pred ceEEEEeCCceEEeCCCCcccCCC---CceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHHH
Confidence 899999999999999998866654 77899999999999999999999999999999999999999 56666999999
Q ss_pred HHHHcCCcceEEEeeeccCCccceEEEEeC-CeeEEEEeecCChhhhhh--------hccCCCcceEEEeeeeeeHHHHH
Q 013550 235 HLIQNKNEYCMEVTPKTLADVKGGTLISYE-GKVQLLEIAQVPDEHVNE--------FKSIEKFKIFNTNNLWVNLKAIK 305 (441)
Q Consensus 235 ~~~~~~~~~~~~vv~k~~~dekgGvl~~~~-g~~~lvEysq~~~~~~~~--------~~~~~~~~~fNtnn~~~~l~~l~ 305 (441)
|++.++++++++|++|+.++++||++|.++ |+++++||+|+|+++.++ +++...|.+||||||||+|++|+
T Consensus 158 ~~~~~~~~~~~kvv~K~~~d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~l~ 237 (266)
T cd04180 158 IAIQNRKAINQKVVPKTRNEESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFLVEFK 237 (266)
T ss_pred HHHHcCCCEEEEEEECCCCCCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEEEEEEEHHHHH
Confidence 999999999999999999999999999988 999999999999998776 56677899999999999999999
Q ss_pred HHHH
Q 013550 306 RLVE 309 (441)
Q Consensus 306 ~~~~ 309 (441)
++++
T Consensus 238 ~~~~ 241 (266)
T cd04180 238 DRVD 241 (266)
T ss_pred HHHH
Confidence 9985
No 12
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=9e-57 Score=459.71 Aligned_cols=365 Identities=20% Similarity=0.245 Sum_probs=291.7
Q ss_pred HHHHHHHHHHhhhhcccCHhHHHHHHHHHHHHhccCCCCccCCccccCCCCCcccCCCCC--CCCCChhhHHhhc--CCe
Q 013550 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLA--PVPEDPAETKKLL--DKL 80 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~l~--~~~~~~~~g~~~l--~kv 80 (441)
+++.+.|+.+++.++-....++.. ..+.. ...+-.+++|.|+..+.++.... ..+.++..|+.++ +++
T Consensus 27 ~~~~~~l~~~ie~l~l~~~~~~~~--~~a~~------~~~~~~~~~p~p~~~~~~~~~~~~~d~d~~~~~G~~~i~~~~~ 98 (477)
T KOG2388|consen 27 EADKESLLDQIEVLNLSRIHGLQR--ISANE------DSKPVGEIRPVPESKSWPLKERGLDDVDQWWKEGLRLIAEGKV 98 (477)
T ss_pred HHHHHHHHHHHHhhcccccchhhh--cChhh------ccCcccccCCCCccccceecccCchhhhHHHhcChhhhhcCcc
Confidence 455556777776665555444432 01111 11344678888887665553332 1223455688887 699
Q ss_pred EEEEEcCCCCCcCCCCCCccceee--CCCCchHHHHHHHHHHHhh------hhCCCcCEEEeeCCCChhHHHHHHHHhCC
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA------KYGCNVPLLLMNSFNTHDDTSKIIEKYSK 152 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v--~~gktfLdl~~~qi~~l~~------~~g~~iPl~IMtS~~T~e~T~~~l~~~~~ 152 (441)
|+++||||||||||++.||+++++ ++|+|+||+++++|+++++ ..|+.||||||||..|++.|++||+.|.+
T Consensus 99 a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~~~~ 178 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFESHKY 178 (477)
T ss_pred eEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhhcCC
Confidence 999999999999999999999996 8899999999999999874 24689999999999999999999999887
Q ss_pred C---CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccc
Q 013550 153 S---NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIV 228 (441)
Q Consensus 153 ~---~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~ 228 (441)
| +.||++|+|+++||++.+|+.+++++ .+++++|.||||+|.|+.++ |++|.++|++|++|+|||| |++++
T Consensus 179 FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k---~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~~~hiy~VdnvL~k~a 253 (477)
T KOG2388|consen 179 FGLKPEQVTFFQQGKLPCLDLDGKFILEQK---NSLAAAPDGNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNVLLKVA 253 (477)
T ss_pred CCCChhHeeeeecccccccccCCceeccCc---cchhcCCCCCcHHHHHHHhh--hhHHHhhcccEEEEEEecceeeEec
Confidence 5 57899999999999999999999987 89999999999999999998 9999999999999999999 99999
Q ss_pred cHHHHHHHHHcCCcceEEEeeeccCCccceEEEEeC-CeeEEEEeecCChhhhhhhc---cCCCcceEEEeeeeeeHHHH
Q 013550 229 DLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYE-GKVQLLEIAQVPDEHVNEFK---SIEKFKIFNTNNLWVNLKAI 304 (441)
Q Consensus 229 Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~~-g~~~lvEysq~~~~~~~~~~---~~~~~~~fNtnn~~~~l~~l 304 (441)
||.|+||++.++++++.++|+|..+.|.+|++|..+ |.+++|||+|+.++...... +...|..+|||||+|++++|
T Consensus 254 DP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~G~~~vvEYsEi~~~~a~~~~~d~g~l~~~agnI~nh~ft~dFL 333 (477)
T KOG2388|consen 254 DPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQGTPLVVEYSELDAELAKAKAPDGGRLLFNAGNICNHFFTLDFL 333 (477)
T ss_pred ccceeeEEeechhhHhhhhccccCCCCceEEEEecCCCceeEEEecccCHHHHhhcccccCccccCCccHHHHHHhhHHH
Confidence 999999999999999999999999999999999988 99999999999998777643 23355667999999999999
Q ss_pred HHHHHhcccCccccccccccC---C---------CCcceeehhhhhhH--------------------------------
Q 013550 305 KRLVEADALKMEIIPNPKEVD---G---------IKVLQLETAAGAAI-------------------------------- 340 (441)
Q Consensus 305 ~~~~~~~~~~lp~~vn~K~i~---~---------~~~iqlEta~g~ai-------------------------------- 340 (441)
+++.......||+|++.|+++ + ++.|++|+++.+.+
T Consensus 334 kk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E~fifdvf~~~k~f~~meV~Re~efSPlKng~~~~~D~p~ 413 (477)
T KOG2388|consen 334 KKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLEQFIFDVFPSAKKFGLMEVPREEEFSPLKNGGKSSTDNPS 413 (477)
T ss_pred HHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEEeeeeeecccccceeEEecchhhhcCccccCCCCCCCChh
Confidence 999988878899999999997 1 34899998855443
Q ss_pred --hhhhhccccCeeEeccCcCCCCCCeEEeCCC--cc--chhhHhhcc
Q 013550 341 --RSDLYTLADGFVTRNEARKNPANPTIELGPE--FK--KVGNFLSRF 382 (441)
Q Consensus 341 --~sDly~~~~~~l~~~~~r~~~~~P~i~L~~~--f~--~v~~~~~r~ 382 (441)
+.|+-.+...|+..++.+..+..-.++++|. |. +++.+..+|
T Consensus 414 T~~~~~l~~h~~wi~~~g~~f~~~~~~~evs~~vsy~GE~lEs~~~g~ 461 (477)
T KOG2388|consen 414 TARIALLRLHIRWIEKAGGIFSDAEAVVEVSPLVSYAGENLESVPSGF 461 (477)
T ss_pred HHHHHHHHhhhhehhccCcEEecCcceEEecceeeecccchhhccccc
Confidence 5555555555555555554333235566665 43 455555433
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=3.1e-12 Score=130.96 Aligned_cols=291 Identities=17% Similarity=0.191 Sum_probs=192.3
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
.+.+|+||-|+||||.++.||.+-++ .|||.+++.++....+. .--++..-.+-.+..++.+.+.. ++.
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~v-aGkpMl~hVi~~a~~l~------~~~i~vVvGh~ae~V~~~~~~~~----~v~ 70 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPV-AGKPMLEHVIDAARALG------PDDIVVVVGHGAEQVREALAERD----DVE 70 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhc-cCccHHHHHHHHHhhcC------cceEEEEEcCCHHHHHHHhcccc----Cce
Confidence 46799999999999999999999999 99999999999999886 34455556677788888887653 466
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCc-EEEEEcCCc-ccccccH-HHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE-YVFAANSDN-LGAIVDL-KILNH 235 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~e-yi~v~nvDN-L~~~~Dp-~~lg~ 235 (441)
++.|. .|.|+|....+. ++ .+..+++ .+.|.++|- |...--. .++.+
T Consensus 71 ~v~Q~------------------------eqlGTgHAV~~a-----~~-~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~ 120 (460)
T COG1207 71 FVLQE------------------------EQLGTGHAVLQA-----LP-ALADDYDGDVLVLYGDVPLITAETLEELLAA 120 (460)
T ss_pred EEEec------------------------ccCChHHHHHhh-----hh-hhhcCCCCcEEEEeCCcccCCHHHHHHHHHh
Confidence 66663 378999854322 22 3334666 899999999 7543222 47777
Q ss_pred HHHcCCcceEEEeeeccCCccceEEEEeCCe-eEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhcccC
Q 013550 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (441)
Q Consensus 236 ~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~-~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~~~~ 314 (441)
+...++........-.+|.-+|-+++..+|+ .++||--+.+++.. .-+..|++.+.|+-.+|.+.|.+-.
T Consensus 121 ~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek-------~I~eiNtGiy~f~~~~L~~~L~~l~-- 191 (460)
T COG1207 121 HPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEK-------QIKEINTGIYAFDGAALLRALPKLS-- 191 (460)
T ss_pred hhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHh-------cCcEEeeeEEEEcHHHHHHHHHHhc--
Confidence 7777888888888888888877777776765 67899888887753 3467899999999999999986411
Q ss_pred ccccccccccCCCCcceeehhhhhhHhhhhhcc--ccCeeEec-cCc----CCCCCCeEEeCCCccchhh-HhhccC---
Q 013550 315 MEIIPNPKEVDGIKVLQLETAAGAAIRSDLYTL--ADGFVTRN-EAR----KNPANPTIELGPEFKKVGN-FLSRFK--- 383 (441)
Q Consensus 315 lp~~vn~K~i~~~~~iqlEta~g~ai~sDly~~--~~~~l~~~-~~r----~~~~~P~i~L~~~f~~v~~-~~~r~~--- 383 (441)
.+.-|=|=-. -|+-.+ +++.-+.+ -.. ..+.+-++.| ..++. |++|..
T Consensus 192 ------------nnNaqgEYYL-----TDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qL----a~~e~~~q~r~~~~~ 250 (460)
T COG1207 192 ------------NNNAQGEYYL-----TDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQL----AEAERIMQRRIAEKL 250 (460)
T ss_pred ------------cccccCcEeH-----HHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHH----HHHHHHHHHHHHHHH
Confidence 0111111000 010000 11111100 000 0011111222 12222 555552
Q ss_pred --CCCceeeeceEEEeeeeEECcceEEEEEEEEEcC--CCCeeecCCCCeeccceecCCCC
Q 013550 384 --SIPSIIELDSLKVTGDVWFGANITLKGKVTIAAK--SGEKLEIPDGAVLENKEINGPGD 440 (441)
Q Consensus 384 --~~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~--~~~~~~ip~g~~l~~~~~~~~~~ 440 (441)
.--+|..=.+..+++||.+|+||++.-.|+|.++ =|....|-+|++|+|..|..+..
T Consensus 251 m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~ 311 (460)
T COG1207 251 MLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAV 311 (460)
T ss_pred HHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCE
Confidence 3457777788899999999888877765555544 34567888898888887775543
No 14
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.43 E-value=1.1e-11 Score=129.23 Aligned_cols=203 Identities=13% Similarity=0.181 Sum_probs=128.0
Q ss_pred hcCCeEEEEEcCCCCCcCC---CCCCccceeeCCCC-chHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhC
Q 013550 76 LLDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS 151 (441)
Q Consensus 76 ~l~kvavv~LaGGlGTRLG---~~~PK~~l~v~~gk-tfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~ 151 (441)
+.+++.+|+||||.||||+ .+.||+|+|| .|+ +++++.++.+...+ +-=+++...+..+.+.+||.+..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv-~gk~plI~~~L~~l~~~G------i~~i~iv~~~~~~~i~~~~~~~~ 74 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPF-GGSYRLIDFVLSNLVNSG------YLRIYVLTQYKSHSLDRHISQTW 74 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceee-CCcceEhHHHHHHHHHCC------CCEEEEEeccCHHHHHHHHHhCc
Confidence 4578999999999999999 7899999999 887 99999999999865 66556666678999999997421
Q ss_pred C-CCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH
Q 013550 152 K-SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL 230 (441)
Q Consensus 152 ~-~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp 230 (441)
. ....+.++... |. . . ...+..|.|+||..... ++.+....-++++|.|+|++... |.
T Consensus 75 ~~~~~~~~~~~~~--~~---------~-~---~~~~~~~lGta~al~~a-----~~~i~~~~~~~~lv~~gD~v~~~-dl 133 (407)
T PRK00844 75 RLSGLLGNYITPV--PA---------Q-Q---RLGKRWYLGSADAIYQS-----LNLIEDEDPDYVVVFGADHVYRM-DP 133 (407)
T ss_pred CccccCCCeEEEC--Cc---------c-c---CCCCCcccCCHHHHHHH-----HHHHHhcCCCEEEEecCCEEEcC-CH
Confidence 1 11111111100 00 0 0 00112478998854221 23333334478999999997654 54
Q ss_pred -HHHHHHHHcCCcceEEEee--eccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHH
Q 013550 231 -KILNHLIQNKNEYCMEVTP--KTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 231 -~~lg~~~~~~~~~~~~vv~--k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~ 306 (441)
.++.++.++++++.+-+.+ ...+. ..|++.. .+|+ +.++.+=|......+ ......+.|++.+.|+-+.|.+
T Consensus 134 ~~l~~~h~~~~~~~ti~~~~~~~~~~~-~~Gvv~~d~~g~--v~~~~eKp~~~~~~~-~~~~~~~~~~Giyi~~~~~l~~ 209 (407)
T PRK00844 134 RQMVDFHIESGAGVTVAAIRVPREEAS-AFGVIEVDPDGR--IRGFLEKPADPPGLP-DDPDEALASMGNYVFTTDALVD 209 (407)
T ss_pred HHHHHHHHhcCCcEEEEEEecchHHcc-cCCEEEECCCCC--EEEEEECCCCccccc-CCCCCcEEEeEEEEEeHHHHHH
Confidence 6677787788887665533 22343 3566654 3454 444444343221111 1122357799999999999877
Q ss_pred HHHh
Q 013550 307 LVEA 310 (441)
Q Consensus 307 ~~~~ 310 (441)
.+++
T Consensus 210 ~l~~ 213 (407)
T PRK00844 210 ALRR 213 (407)
T ss_pred HHHH
Confidence 6653
No 15
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=9.1e-12 Score=127.92 Aligned_cols=178 Identities=15% Similarity=0.185 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCc
Q 013550 80 LVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (441)
Q Consensus 80 vavv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~ 156 (441)
+-+++||||.||||.- +.||+|+|| .|+++++++++.+.+.. +--++++..+..+.++++|++...+..+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI-~gkPii~~~l~~L~~~G------v~eivi~~~y~~~~i~~~~~d~~~~~~~ 74 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPI-AGKPLIEYVLEALAAAG------VEEIVLVVGYLGEQIEEYFGDGEGLGVR 74 (358)
T ss_pred ceEEEEeCCccccccccccCCCccccee-CCccHHHHHHHHHHHCC------CcEEEEEeccchHHHHHHHhcccccCCc
Confidence 4578999999999984 899999999 79999999999998865 7778888888999999999987555566
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHHHH
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNH 235 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~ 235 (441)
|.+ ..+..|.|+|| ++.......+.+-++|.|+|++... |. .++.+
T Consensus 75 I~y------------------------~~e~~~lGTag--------~l~~a~~~l~~~~f~v~~GDv~~~~-dl~~l~~~ 121 (358)
T COG1208 75 ITY------------------------VVEKEPLGTAG--------ALKNALDLLGGDDFLVLNGDVLTDL-DLSELLEF 121 (358)
T ss_pred eEE------------------------EecCCcCccHH--------HHHHHHHhcCCCcEEEEECCeeecc-CHHHHHHH
Confidence 553 33345999999 4455444445588999999998765 44 57777
Q ss_pred HHHcCCcceEEEeeeccCCccceEEEEe-CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHH
Q 013550 236 LIQNKNEYCMEVTPKTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK 305 (441)
Q Consensus 236 ~~~~~~~~~~~vv~k~~~dekgGvl~~~-~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~ 305 (441)
+.++++...+..++...+ ..-|++... ++ -.+.++.+=|... . ..-.+.|++.++++-+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~-~~~Gvv~~~~~~-~~v~~f~ekp~~~-~-----~~~~~in~Giyi~~~~v~~ 184 (358)
T COG1208 122 HKKKGALATIALTRVLDP-SEFGVVETDDGD-GRVVEFREKPGPE-E-----PPSNLINAGIYIFDPEVFD 184 (358)
T ss_pred HHhccCccEEEEEecCCC-CcCceEEecCCC-ceEEEEEecCCCC-C-----CCCceEEeEEEEECHHHhh
Confidence 777766666666666566 344555544 43 4566666555320 1 1124789999999999888
No 16
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.39 E-value=2.4e-11 Score=127.46 Aligned_cols=203 Identities=13% Similarity=0.162 Sum_probs=127.8
Q ss_pred HHhhcCCeEEEEEcCCCCCcCCC---CCCccceeeCCCCc-hHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHH
Q 013550 73 TKKLLDKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLT-FLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKII 147 (441)
Q Consensus 73 g~~~l~kvavv~LaGGlGTRLG~---~~PK~~l~v~~gkt-fLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l 147 (441)
++.+-.++.+|+||||.||||.. +.||+|+|+ .|++ ++++.++++...+ +. ++|.| .+..+.+.++|
T Consensus 9 ~~~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv-~gkp~lI~~~l~~l~~~G------i~~i~vv~-~~~~~~i~~~~ 80 (425)
T PRK00725 9 ARQLTRDTLALILAGGRGSRLKELTDKRAKPAVYF-GGKFRIIDFALSNCINSG------IRRIGVLT-QYKAHSLIRHI 80 (425)
T ss_pred hHhhhcceEEEEECCCCCCcchhhhCCCcceeEEE-CCEEEEhHHHHHHHHHCC------CCeEEEEe-cCCHHHHHHHH
Confidence 45555889999999999999986 799999999 8896 9999999998753 44 45555 46788889999
Q ss_pred HHh-CCCCC----ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCC
Q 013550 148 EKY-SKSNV----EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSD 222 (441)
Q Consensus 148 ~~~-~~~~~----~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvD 222 (441)
.+. ...+. .+.++.+. .....+..|.|+|+....- ++.+....-++++|.++|
T Consensus 81 ~~~~~~~~~~~~~~i~i~~~~-----------------~~~~~e~~~lGTa~al~~a-----~~~l~~~~~d~~lVl~gD 138 (425)
T PRK00725 81 QRGWSFFREELGEFVDLLPAQ-----------------QRVDEENWYRGTADAVYQN-----LDIIRRYDPKYVVILAGD 138 (425)
T ss_pred HhhhcccccCCCCeEEEeCCc-----------------ccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEecCC
Confidence 752 11111 11111100 0012234578998844322 233333334789999999
Q ss_pred cccccccH-HHHHHHHHcCCcceEEEeee--ccCCccceEEEEe-CCeeEEEEeecCChhhhhhhccCCCcceEEEeeee
Q 013550 223 NLGAIVDL-KILNHLIQNKNEYCMEVTPK--TLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLW 298 (441)
Q Consensus 223 NL~~~~Dp-~~lg~~~~~~~~~~~~vv~k--~~~dekgGvl~~~-~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~ 298 (441)
++... |. .++-++.++++++.+.+.+. ..+ ...|++... +|+ +.++.+=|.... .........+.|++.+.
T Consensus 139 ~l~~~-dl~~ll~~h~~~~~~~tl~~~~~~~~~~-~~yG~v~~d~~~~--V~~~~EKp~~~~-~~~~~~~~~l~n~GIYi 213 (425)
T PRK00725 139 HIYKM-DYSRMLADHVESGADCTVACLEVPREEA-SAFGVMAVDENDR--ITAFVEKPANPP-AMPGDPDKSLASMGIYV 213 (425)
T ss_pred eEecc-CHHHHHHHHHHcCCCEEEEEEecchhhc-ccceEEEECCCCC--EEEEEECCCCcc-ccccCccceEEEeeEEE
Confidence 97654 54 67777888888887765432 233 344676653 344 444444332211 01111223467999999
Q ss_pred eeHHHHHHHHHh
Q 013550 299 VNLKAIKRLVEA 310 (441)
Q Consensus 299 ~~l~~l~~~~~~ 310 (441)
|+-+.|.+.+.+
T Consensus 214 ~~~~~L~~~L~~ 225 (425)
T PRK00725 214 FNADYLYELLEE 225 (425)
T ss_pred EeHHHHHHHHHH
Confidence 999998877653
No 17
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.35 E-value=4.5e-11 Score=122.52 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=120.7
Q ss_pred CCeEEEEEcCCCCCcCCC---CCCccceeeCCCC-chHHHHHHHHHHHhhhhCCCcCEEEeeCCCChh-HHHHHHHHhCC
Q 013550 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHD-DTSKIIEKYSK 152 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~---~~PK~~l~v~~gk-tfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e-~T~~~l~~~~~ 152 (441)
+++.+|+||||.||||+- +.||+|+|| .|| +++|++++++.+.+ +-=+++...+.++ .+++||.+...
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV-~gk~PlIe~~l~~L~~~G------i~~I~iv~~~~~~~~I~~~l~~~~~ 73 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPF-GGRYRLIDFPLSNMVNAG------IRNVFIFFKNKERQSLFDHLGSGRE 73 (369)
T ss_pred CcEEEEEECCCCCccccccccCCccccccc-CCeeeEEEEEhhhhhccC------CCEEEEEeCCCcHHHHHHHHhCCCC
Confidence 367889999999999984 899999999 899 89999999999865 5545555555555 99999976332
Q ss_pred CCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-H
Q 013550 153 SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-K 231 (441)
Q Consensus 153 ~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~ 231 (441)
++.++. +..+..+ + ..+..|.|+|+.+...+. ++.+...+-++++|.|+|++... |. .
T Consensus 74 ~~~~~~---~~~~~~~-------~-------~~e~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnGD~l~~~-dl~~ 132 (369)
T TIGR02092 74 WDLHRK---RDGLFVF-------P-------YNDRDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNSHMVCNI-DLKA 132 (369)
T ss_pred CCcccc---cCcEEEE-------e-------ccCCCCcccChHHHHHHH---HHHHHhCCCCEEEEECCCEEEec-CHHH
Confidence 222211 0000000 0 012245677775422221 22222223478999999997654 55 6
Q ss_pred HHHHHHHcCCcceEEEeeec--cCCccceEEEEe-CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHH
Q 013550 232 ILNHLIQNKNEYCMEVTPKT--LADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (441)
Q Consensus 232 ~lg~~~~~~~~~~~~vv~k~--~~dekgGvl~~~-~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~ 308 (441)
++.++.++++++.+.+.+.. .+..++|++... +|+ +.++.+-++. . .. ...|++.+.|+-+.+.+.+
T Consensus 133 ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~--v~~~~~~~~~---~----~~-~~~~~Giyi~~~~~l~~~l 202 (369)
T TIGR02092 133 VLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGK--VKSIGQNLNP---E----EE-ENISLDIYIVSTDLLIELL 202 (369)
T ss_pred HHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCC--EEeccccCCC---C----Cc-ceeeeeEEEEEHHHHHHHH
Confidence 67777788888766665433 456666776553 453 3333211111 0 01 2458999999988777666
Q ss_pred Hh
Q 013550 309 EA 310 (441)
Q Consensus 309 ~~ 310 (441)
+.
T Consensus 203 ~~ 204 (369)
T TIGR02092 203 YE 204 (369)
T ss_pred HH
Confidence 53
No 18
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.31 E-value=2.1e-10 Score=117.95 Aligned_cols=197 Identities=16% Similarity=0.228 Sum_probs=118.9
Q ss_pred CCeEEEEEcCCCCCcCCC---CCCccceeeCCCC-chHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhCC
Q 013550 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSK 152 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~---~~PK~~l~v~~gk-tfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~~ 152 (441)
+++-+|+||||.||||+. +.||+|+|+ .|+ +++|++++++...+ +- ++|.| .+..+.+.+||++...
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv-~gk~pli~~~l~~l~~~G------i~~i~iv~-~~~~~~i~~~~~~~~~ 73 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPF-GGKYRIIDFTLSNCANSG------IDTVGVLT-QYQPLELNNHIGIGSP 73 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeee-CCceeehhHHHHHHHhCC------CCEEEEEe-cCCHHHHHHHHhCCCc
Confidence 578899999999999986 889999999 888 89999999998754 43 45555 5678889999875332
Q ss_pred CCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-H
Q 013550 153 SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-K 231 (441)
Q Consensus 153 ~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~ 231 (441)
++.+.. +..+..+. +.. . ......|.|+|+..... ++.+....-++++|.++|++... |. .
T Consensus 74 ~~~~~~---~~~~~i~~-----~~~-~---~~~~~~~~Gta~al~~a-----~~~l~~~~~~~~lV~~gD~l~~~-d~~~ 135 (380)
T PRK05293 74 WDLDRI---NGGVTILP-----PYS-E---SEGGKWYKGTAHAIYQN-----IDYIDQYDPEYVLILSGDHIYKM-DYDK 135 (380)
T ss_pred ccccCC---CCCEEEeC-----Ccc-c---CCCCcccCCcHHHHHHH-----HHHHHhCCCCEEEEecCCEEEcC-CHHH
Confidence 221110 00000000 000 0 00011357887733211 22232223478999999997644 43 5
Q ss_pred HHHHHHHcCCcceEEEeeec-cCCccceEEEEe-CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 232 ILNHLIQNKNEYCMEVTPKT-LADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 232 ~lg~~~~~~~~~~~~vv~k~-~~dekgGvl~~~-~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
++.++.++++++.+-+.... ....+.|++... +|+ +.++.+-|.. ..-...|++.+.|+.+.+.++++
T Consensus 136 ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~--V~~~~eKp~~--------~~~~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 136 MLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMR--IVEFEEKPKN--------PKSNLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred HHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCc--EEEEEeCCCC--------CCcceeeeEEEEEcHHHHHHHHH
Confidence 66667777788655443221 122345666543 444 4455544321 11246799999999998887765
Q ss_pred h
Q 013550 310 A 310 (441)
Q Consensus 310 ~ 310 (441)
+
T Consensus 206 ~ 206 (380)
T PRK05293 206 E 206 (380)
T ss_pred H
Confidence 4
No 19
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.26 E-value=3.7e-10 Score=115.12 Aligned_cols=177 Identities=17% Similarity=0.192 Sum_probs=114.3
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
+|+||||.||||+. ..||+++|+ .|++++++.++.+.+.+ . -.++++++....+.+.+++.+...+..++.
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv-~g~pli~~~l~~l~~~g----i-~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~ 75 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPV-ANKPILQYAIEDLAEAG----I-TDIGIVVGPVTGEEIKEIVGEGERFGAKIT 75 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEE-CCEeHHHHHHHHHHHCC----C-CEEEEEeCCCCHHHHHHHHhcccccCceEE
Confidence 58999999999974 889999999 88999999999988753 1 246777777678889999876433333433
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNHLI 237 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~ 237 (441)
+..| ..|.|.++...+- ++.+ +.+.++|.+.|++... |. .++-.+.
T Consensus 76 ~~~~------------------------~~~~G~~~al~~a-----~~~l---~~~~~li~~gD~~~~~-~l~~l~~~~~ 122 (353)
T TIGR01208 76 YIVQ------------------------GEPLGLAHAVYTA-----RDFL---GDDDFVVYLGDNLIQD-GISRFVKSFE 122 (353)
T ss_pred EEEC------------------------CCCCCHHHHHHHH-----HHhc---CCCCEEEEECCeecCc-cHHHHHHHHH
Confidence 3221 1367887733322 1112 2244677889996543 43 5667777
Q ss_pred HcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 238 QNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 238 ~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
++++++.+-+.+..++.. -|++...++. ++.++.+-|... .-...|++.++|+-..++.+
T Consensus 123 ~~~~d~ti~~~~~~~~~~-~g~~~~~~~~-~v~~~~ekp~~~--------~~~~~~~Giy~~~~~l~~~l 182 (353)
T TIGR01208 123 EKDYDALILLTKVRDPTA-FGVAVLEDGK-RILKLVEKPKEP--------PSNLAVVGLYMFRPLIFEAI 182 (353)
T ss_pred hcCCCcEEEEEECCChhh-CeEEEEcCCC-cEEEEEECCCCC--------CccceEEEEEEECHHHHHHH
Confidence 788888877765555533 4665554332 444544444321 12457999999998555443
No 20
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.25 E-value=9.3e-10 Score=115.58 Aligned_cols=204 Identities=14% Similarity=0.171 Sum_probs=122.1
Q ss_pred CCeEEEEEcCCCCCcCCC---CCCccceeeCCCC-chHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCC
Q 013550 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~---~~PK~~l~v~~gk-tfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~ 153 (441)
.++.+|+||||.||||.. +.||+|+|+ .|+ +++++.++++...+ +.-++....+..+.+.++|++...+
T Consensus 2 ~~~~AVILAaG~GtRL~PLT~~~PK~Llpi-~gk~plI~~~L~~l~~~G------i~~vivv~~~~~~~i~~~l~~~~~~ 74 (429)
T PRK02862 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPL-AGKYRLIDIPISNCINSG------INKIYVLTQFNSASLNRHISQTYNF 74 (429)
T ss_pred CcEEEEEECCCCCCcchhhhcCCcceeeEE-CCeeEEeHHHHHHHHHCC------CCEEEEEecCCHHHHHHHHhcCcCc
Confidence 378899999999999984 899999999 788 99999999998753 4444444446788899999753211
Q ss_pred CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HH
Q 013550 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KI 232 (441)
Q Consensus 154 ~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~ 232 (441)
.. +..+.+..+. .... ......+.|+||..... ++.+....-++++|.|.|++.. .|. .+
T Consensus 75 ~~----~~~g~~~i~~------~~~~---~~~~~~~lGTa~al~~a-----~~~l~~~~~~~~lVl~gD~l~~-~dl~~l 135 (429)
T PRK02862 75 DG----FSGGFVEVLA------AQQT---PENPSWFQGTADAVRKY-----LWHFQEWDVDEYLILSGDQLYR-MDYRLF 135 (429)
T ss_pred cc----cCCCEEEEeC------Cccc---CCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEecCCEEEe-CCHHHH
Confidence 00 0000000000 0000 00111237998854322 2333333347899999999765 355 56
Q ss_pred HHHHHHcCCcceEEEeeec--cCCccceEEEEe-CCeeEEEEeecCChhh-hhhh------------ccCCCcceEEEee
Q 013550 233 LNHLIQNKNEYCMEVTPKT--LADVKGGTLISY-EGKVQLLEIAQVPDEH-VNEF------------KSIEKFKIFNTNN 296 (441)
Q Consensus 233 lg~~~~~~~~~~~~vv~k~--~~dekgGvl~~~-~g~~~lvEysq~~~~~-~~~~------------~~~~~~~~fNtnn 296 (441)
+.++.++++++.+-+.+.. .+. .-|++... +|+ +.++.+-|... .+.+ +....-.+.|++.
T Consensus 136 l~~h~~~~a~~tl~~~~~~~~~~~-~yG~i~~d~~g~--V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Gi 212 (429)
T PRK02862 136 VQHHRETGADITLAVLPVDEKDAS-GFGLMKTDDDGR--ITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGI 212 (429)
T ss_pred HHHHHHcCCCEEEEEEecChhhcc-cceEEEECCCCc--EEEEEECCCccccchhcccccccccccccCCCCceEEEEEE
Confidence 7777778888776654332 232 34665543 444 44444444321 1100 0001223679999
Q ss_pred eeeeHHHHHHHHHh
Q 013550 297 LWVNLKAIKRLVEA 310 (441)
Q Consensus 297 ~~~~l~~l~~~~~~ 310 (441)
+.|+.+.|.+++++
T Consensus 213 yi~~~~vl~~~l~~ 226 (429)
T PRK02862 213 YVFSRDVLFDLLNK 226 (429)
T ss_pred EEEcHHHHHHHHHH
Confidence 99999999888765
No 21
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.24 E-value=2.9e-10 Score=114.11 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=116.2
Q ss_pred CeEEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCC--
Q 013550 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS-- 153 (441)
Q Consensus 79 kvavv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~-- 153 (441)
.+-+|+||||.||||. ...||+|+|| .|+++++++++.+...+ +.-++....+..+.+.+||.....+
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV-~gkPiI~~vl~~l~~~G------i~~ivivv~~~~~~i~~~~~~~~~~~~ 75 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI-VDKPMIQYIVDEIVAAG------IKEIVLVTHASKNAVENHFDTSYELES 75 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEE-CCEEHHHHHHHHHHHCC------CCEEEEEecCChHHHHHHHhchHHHHH
Confidence 5678999999999998 4789999999 89999999999999764 5545555556888899999642100
Q ss_pred ------CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCccccc
Q 013550 154 ------NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAI 227 (441)
Q Consensus 154 ------~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~ 227 (441)
+.++.-+.|...+. + +.+. +..+..|.|+|+.. ...+..-+-+.++|.++|+|...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~----~-~~i~-----~~~q~~~lGtg~Av--------~~a~~~l~~~~flvv~gD~l~~~ 137 (297)
T TIGR01105 76 LLEQRVKRQLLAEVQSICPP----G-VTIM-----NVRQAQPLGLGHSI--------LCARPVVGDNPFVVVLPDIIIDD 137 (297)
T ss_pred HHHHhcchhhhhhhhhcCCC----C-ceEE-----EeeCCCcCchHHHH--------HHHHHHhCCCCEEEEECCeeccc
Confidence 00000000000000 0 0010 23345789999933 22222223355778889997531
Q ss_pred -------ccH-HHHHHHHHcCCcceEEEeee-ccCCccceEEEE-----eCCee-EEEEeecCChhhhhhhccCCCcceE
Q 013550 228 -------VDL-KILNHLIQNKNEYCMEVTPK-TLADVKGGTLIS-----YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIF 292 (441)
Q Consensus 228 -------~Dp-~~lg~~~~~~~~~~~~vv~k-~~~dekgGvl~~-----~~g~~-~lvEysq~~~~~~~~~~~~~~~~~f 292 (441)
.|. .++.++.++++.+.+ +.+. ..+ ..-|++.. .+|+. +++|+-|=|.... ...-.+.
T Consensus 138 ~~~~~~~~~l~~li~~~~~~~~~~~~-~~~~~~~~-~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~-----~~~s~~~ 210 (297)
T TIGR01105 138 ATADPLRYNLAAMIARFNETGRSQVL-AKRMPGDL-SEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQ-----TLDSDLM 210 (297)
T ss_pred cccccchhHHHHHHHHHHHhCCcEEE-EEEcCCCC-ccceEEEecccccCCCCeeeEeEEEECCCCcc-----cCCcCEE
Confidence 132 455555556665533 3333 244 44566654 24553 5677765442210 0123578
Q ss_pred EEeeeeeeHHHHHHH
Q 013550 293 NTNNLWVNLKAIKRL 307 (441)
Q Consensus 293 Ntnn~~~~l~~l~~~ 307 (441)
|++.+.|+-+.+..+
T Consensus 211 ~~GiYi~~~~i~~~l 225 (297)
T TIGR01105 211 AVGRYVLSADIWAEL 225 (297)
T ss_pred EEEEEEECHHHHHHH
Confidence 999999998876643
No 22
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.24 E-value=4.3e-10 Score=119.58 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=113.5
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
..++.|+||||.||||+.+.||.++|+ .|+|++++.++.+.+.. . -.+++.++. ..+.+.++++++.. .+
T Consensus 3 ~~~~avILAaG~gtRm~~~~pK~llpi-~gkpli~~~l~~l~~~g----~-~~iivvv~~-~~~~i~~~~~~~~~---~~ 72 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRSDTPKVLHTL-AGRSMLGHVLHAAAGLA----P-QHLVVVVGH-DRERVAPAVAELAP---EV 72 (482)
T ss_pred CCceEEEEcCCCCCcCCCCCCceecee-CCccHHHHHHHHHHhcC----C-CcEEEEECC-CHHHHHHHhhccCC---cc
Confidence 457889999999999998899999999 89999999999998753 2 256666665 45667777764311 11
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCccc-chhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDV-FPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILN 234 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi-~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg 234 (441)
.+.. ...|.|.|+. +.++ +.+....-++++|.+.|+ +....|. .++.
T Consensus 73 ~~~~------------------------~~~~~Gt~~si~~al------~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~ 122 (482)
T PRK14352 73 DIAV------------------------QDEQPGTGHAVQCAL------EALPADFDGTVVVTAGDVPLLDGETLADLVA 122 (482)
T ss_pred EEEe------------------------CCCCCCcHHHHHHHH------HHhccCCCCeEEEEeCCeeccCHHHHHHHHH
Confidence 1111 1246677762 2222 222222347899999999 5443333 3444
Q ss_pred HHHHcCCcceEEEeeeccCCccceEEEE-eCCee-EEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 235 HLIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 235 ~~~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~-~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
.+.++++++.+.+.+..++.. .|.+.. .+|+. .++|....+++. ......|++.++|+.+.|.+++++
T Consensus 123 ~~~~~~~~~~v~~~~~~~p~~-yg~~~~~~~g~V~~~~EKp~~~~~~-------~~~~~~~~Giy~f~~~~l~~~~~~ 192 (482)
T PRK14352 123 THTAEGNAVTVLTTTLDDPTG-YGRILRDQDGEVTAIVEQKDATPSQ-------RAIREVNSGVYAFDAAVLRSALAR 192 (482)
T ss_pred HHHhcCCeEEEEEeecCCCCC-CCEEEECCCCCEEEEEECCCCCHHH-------hhcceEEEEEEEEEHHHHHHHHHh
Confidence 455556665554444444444 344443 45543 234433322221 112357999999999999887653
No 23
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.24 E-value=5e-10 Score=116.70 Aligned_cols=180 Identities=20% Similarity=0.233 Sum_probs=118.0
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||+...||+|+|+ .|+|++++.++++.... -..+|+++. ..+.+.++++++.. .+.
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi-~gkPli~~~i~~l~~~~------~~i~Ivv~~-~~~~i~~~~~~~~~---~v~ 70 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTI-CGKPMLFYILKEAFAIS------DDVHVVLHH-QKERIKEAVLEYFP---GVI 70 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEE-CCccHHHHHHHHHHHcC------CcEEEEECC-CHHHHHHHHHhcCC---ceE
Confidence 35689999999999999999999999 89999999999998742 246666654 57788888876421 233
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~ 238 (441)
+..|. ++.+.|+|+.+..+ +...+++++.+.|+.. .++..+..+.+
T Consensus 71 ~~~~~----------------------~~~~~gt~~al~~~----------~~~~d~vlv~~gD~p~--~~~~~l~~l~~ 116 (430)
T PRK14359 71 FHTQD----------------------LENYPGTGGALMGI----------EPKHERVLILNGDMPL--VEKDELEKLLE 116 (430)
T ss_pred EEEec----------------------CccCCCcHHHHhhc----------ccCCCeEEEEECCccC--CCHHHHHHHHh
Confidence 32221 12456777744321 1235799999999932 25567777777
Q ss_pred cCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 239 NKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 239 ~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
.++++.+.+.+..++.. -|++...+|+ ++++.+-+....++ ......|++.++|+-+.+++.++.
T Consensus 117 ~~~~~~v~~~~~~~~~~-~g~v~~d~g~--v~~i~e~~~~~~~~----~~~~~~~~Giyif~~~~l~~~~~~ 181 (430)
T PRK14359 117 NDADIVMSVFHLADPKG-YGRVVIENGQ--VKKIVEQKDANEEE----LKIKSVNAGVYLFDRKLLEEYLPL 181 (430)
T ss_pred CCCCEEEEEEEcCCCcc-CcEEEEcCCe--EEEEEECCCCCccc----ccceEEEeEEEEEEHHHHHHHHHh
Confidence 77787766665555544 4555445564 33333222111110 112456999999999999887653
No 24
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.21 E-value=3.6e-10 Score=108.61 Aligned_cols=182 Identities=19% Similarity=0.247 Sum_probs=120.6
Q ss_pred EEEEcCCCCCcCC---CCCCccceeeCCCC-chHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhCCCCCc
Q 013550 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKSNVE 156 (441)
Q Consensus 82 vv~LaGGlGTRLG---~~~PK~~l~v~~gk-tfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~~~~~~ 156 (441)
.|+||||.||||. .+.||+|+|+ .|+ +++++.++++...+ +- +++.++.+..+.+.+++++...+..+
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i-~g~~pli~~~l~~l~~~g------~~~ii~V~~~~~~~~i~~~~~~~~~~~~~ 74 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPI-GGKYPLIDYVLENLANAG------IKEIIVVVNGYKEEQIEEHLGSGYKFGVK 74 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEE-TTEEEHHHHHHHHHHHTT------CSEEEEEEETTTHHHHHHHHTTSGGGTEE
T ss_pred EEEECCCCCccCchhhhcccccccee-cCCCcchhhhhhhhcccC------CceEEEEEeeccccccccccccccccccc
Confidence 4788999999997 5889999999 666 99999999999865 34 36667767778899999875433445
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCC-CcEEEEEcCCcccccccHHHHHH
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQG-KEYVFAANSDNLGAIVDLKILNH 235 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G-~eyi~v~nvDNL~~~~Dp~~lg~ 235 (441)
+.+..|. .|.|+|+..... .+.+.... -++++|.++|++....-..++-.
T Consensus 75 i~~i~~~------------------------~~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~ 125 (248)
T PF00483_consen 75 IEYIVQP------------------------EPLGTAGALLQA-----LDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEF 125 (248)
T ss_dssp EEEEEES------------------------SSSCHHHHHHHT-----HHHHTTSEE-SEEEEETTEEEESTTHHHHHHH
T ss_pred ceeeecc------------------------cccchhHHHHHH-----HHHhhhccccceEEEEeccccccchhhhHHHh
Confidence 5544332 344888844322 22222222 24699999999776522478888
Q ss_pred HHHcCCcc--eEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 236 LIQNKNEY--CMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 236 ~~~~~~~~--~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
+.+++.++ .+...+...+ ..-|++.. .+| +|+++-|=|.... ...+.|++.++|+-+.+..+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~--~V~~~~EKP~~~~-------~~~~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 126 HRESNADGTVTLLVVPVEDP-SRYGVVEVDEDG--RVIRIVEKPDNPN-------ASNLINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp HHHHSSCESEEEEEEESSGG-GGSEEEEEETTS--EEEEEEESCSSHS-------HSSEEEEEEEEEETHHHHHHHH
T ss_pred hhcccccccccccccccccc-ccceeeeeccce--eEEEEeccCcccc-------cceeccCceEEEcchHHHHHhh
Confidence 88888754 3334444444 44455444 335 4555544443321 1457899999999999988864
No 25
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.20 E-value=1.2e-09 Score=115.03 Aligned_cols=182 Identities=16% Similarity=0.184 Sum_probs=109.9
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCc-CEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~i-Pl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
.+.+|+||||.||||+.+.||+|+|+ .|+|++++.++.+.+.. + .+++.++. ..+...+++.+. ++
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i-~gkpli~~~l~~l~~~~------~~~iivv~~~-~~~~i~~~~~~~-----~~ 71 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTL-LGEPMLRFVYRALRPLF------GDNVWTVVGH-RADMVRAAFPDE-----DA 71 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceeccc-CCCcHHHHHHHHHHhcC------CCcEEEEECC-CHHHHHHhcccc-----Cc
Confidence 57889999999999998999999999 89999999999887643 3 35555554 455555554321 11
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~ 235 (441)
.+.. ...|.|.|+. ++ ..++.|...+.+++++.+.|. +...-+. .++..
T Consensus 72 ~~v~------------------------~~~~~Gt~~a---l~--~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~ 122 (456)
T PRK14356 72 RFVL------------------------QEQQLGTGHA---LQ--CAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKE 122 (456)
T ss_pred eEEE------------------------cCCCCCcHHH---HH--HHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHH
Confidence 1111 1135676652 22 123444444678999999999 5433222 22222
Q ss_pred HHHcCCcceEEEeeeccCCccceEEEEeCCee-EEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 236 ~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~-~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
+ .+++.++.+.+..++.. -|++...+|+. .++|-...++.... ......|++.++|+-++++++++.
T Consensus 123 ~--~~~~~~l~~~~~~~~~~-~g~v~~~~g~V~~~~ek~~~~~~~~~-----~~~~~~~~GiY~f~~~~l~~ll~~ 190 (456)
T PRK14356 123 A--AGADLAFMTLTLPDPGA-YGRVVRRNGHVAAIVEAKDYDEALHG-----PETGEVNAGIYYLRLDAVESLLPR 190 (456)
T ss_pred H--hcCCEEEEEEEcCCCCC-ceEEEEcCCeEEEEEECCCCChHHhh-----hhcCeEEEEEEEEEHHHHHHHHHh
Confidence 2 25566655555555554 45655555653 22332222222111 113467999999999998877653
No 26
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.18 E-value=1.2e-09 Score=116.28 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=107.5
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
.++.+|+||||.||||+...||+|+|+ .|++++++.++++.+.. + -.++|.+. +..+.+.++++.. .+
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~llpi-~gkpli~~~l~~l~~~g----i-~~ivvv~~-~~~~~i~~~~~~~-----~i 73 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKVLHPV-AGRPMVAWAVKAARDLG----A-RKIVVVTG-HGAEQVEAALQGS-----GV 73 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCceecEE-CCeeHHHHHHHHHHhCC----C-CeEEEEeC-CCHHHHHHHhccC-----Cc
Confidence 468899999999999998889999999 88999999999988753 2 13445444 4566777776521 12
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~ 235 (441)
.+ +. ...|.|.|+.+.+- ++.+ ...-+.++|.+.|+ +....+. .++.+
T Consensus 74 ~~----------------v~--------~~~~~Gt~~al~~~-----~~~l-~~~~~~~lV~~gD~P~i~~~~l~~ll~~ 123 (481)
T PRK14358 74 AF----------------AR--------QEQQLGTGDAFLSG-----ASAL-TEGDADILVLYGDTPLLRPDTLRALVAD 123 (481)
T ss_pred EE----------------ec--------CCCcCCcHHHHHHH-----HHHh-hCCCCcEEEEeCCeeccCHHHHHHHHHH
Confidence 22 11 11366887743221 2222 22233478899999 5443333 45666
Q ss_pred HHHcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHH
Q 013550 236 LIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK 302 (441)
Q Consensus 236 ~~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~ 302 (441)
+.++++++.+.+.+..++.. .|++.. .+|+ +.++.|=|+....+ ..-...|++.+.|+-+
T Consensus 124 ~~~~~~~~ti~~~~~~~~~~-yG~v~~d~~g~--v~~~~Ek~~~~~~~----~~~~~~n~Giyi~~~~ 184 (481)
T PRK14358 124 HRAQGSAMTILTGELPDATG-YGRIVRGADGA--VERIVEQKDATDAE----KAIGEFNSGVYVFDAR 184 (481)
T ss_pred HHhcCCeEEEEEEEcCCCCC-ceEEEECCCCC--EEEEEECCCCChhH----hhCCeEEEEEEEEchH
Confidence 66777777665544444444 567655 3554 44444433221111 0113579999999944
No 27
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.18 E-value=1.9e-09 Score=105.43 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=120.0
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCC--CCc
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS--NVE 156 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~--~~~ 156 (441)
+|+||||.||||+. +.||+|+|| .|++++++.++.+.+.+ +.-+++...+..+.+.++|.+.... ..+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv-~g~pii~~~l~~l~~~g------i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 74 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEI-GGKPILWHIMKIYSHHG------INDFIICCGYKGYVIKEYFANYFLHMSDVT 74 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEE-CCEEHHHHHHHHHHHCC------CCEEEEEcCCCHHHHHHHHHhhhhcccCee
Confidence 57899999999965 489999999 89999999998888754 6767777777889999999875422 233
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHHHH
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNH 235 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~ 235 (441)
+.+ .++.......+.. +..- ....+..|.|+||.+... +..-+-++++|.|+|++... |. .++.+
T Consensus 75 ~~~-~~~~~~~~~~~~~-~~~~---~~~~~~~~~gt~~al~~~--------~~~i~~e~flv~~gD~i~~~-dl~~~~~~ 140 (254)
T TIGR02623 75 FHM-ADNTMEVHHKRVE-PWRV---TLVDTGESTQTGGRLKRV--------REYLDDEAFCFTYGDGVADI-DIKALIAF 140 (254)
T ss_pred EEe-cccccccccccCC-ccce---eeeecCCcCCcHHHHHHH--------HHhcCCCeEEEEeCCeEecC-CHHHHHHH
Confidence 322 2222222111100 0000 011223578998844222 11223467889999997654 55 66677
Q ss_pred HHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHH
Q 013550 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (441)
Q Consensus 236 ~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~ 308 (441)
+.+.++++.+.++. .+ ..-|++...+| ++.++.+=|.. .....|++.+.|+-+.+ +.+
T Consensus 141 h~~~~~d~tl~~~~--~~-~~yG~v~~d~~--~V~~~~Ekp~~---------~~~~i~~Giyi~~~~il-~~l 198 (254)
T TIGR02623 141 HRKHGKKATVTAVQ--PP-GRFGALDLEGE--QVTSFQEKPLG---------DGGWINGGFFVLNPSVL-DLI 198 (254)
T ss_pred HHHcCCCEEEEEec--CC-CcccEEEECCC--eEEEEEeCCCC---------CCCeEEEEEEEEcHHHH-hhc
Confidence 77778887765442 33 34577665555 45555543321 12468999999998877 444
No 28
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.18 E-value=1.1e-09 Score=105.14 Aligned_cols=181 Identities=20% Similarity=0.237 Sum_probs=118.1
Q ss_pred EEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhCC-CCC
Q 013550 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSK-SNV 155 (441)
Q Consensus 81 avv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~~-~~~ 155 (441)
-+|+||||.||||+. +.||+++|+ .|++++++.++.+...+ +. .+|.+ .+.++.+.+++.+... .+.
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv-~g~pli~~~l~~l~~~g------~~~v~iv~-~~~~~~~~~~l~~~~~~~~~ 73 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEF-CNKPMIEHQIEALAKAG------VKEIILAV-NYRPEDMVPFLKEYEKKLGI 73 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeE-CCcchHHHHHHHHHHCC------CcEEEEEe-eeCHHHHHHHHhcccccCCe
Confidence 368999999999975 789999999 88999999999998853 44 44455 4567788888875421 122
Q ss_pred ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHH
Q 013550 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNH 235 (441)
Q Consensus 156 ~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~ 235 (441)
++.+ ..+..|.|.|+.+... .+ .+...-+-++|.+.|++...--..++.+
T Consensus 74 ~i~~------------------------~~~~~~~G~~~al~~a-----~~-~~~~~~~~~lv~~~D~~~~~~~~~~~~~ 123 (233)
T cd06425 74 KITF------------------------SIETEPLGTAGPLALA-----RD-LLGDDDEPFFVLNSDVICDFPLAELLDF 123 (233)
T ss_pred EEEe------------------------ccCCCCCccHHHHHHH-----HH-HhccCCCCEEEEeCCEeeCCCHHHHHHH
Confidence 2221 1122467877633211 12 2222124467889999765423468888
Q ss_pred HHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHH
Q 013550 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (441)
Q Consensus 236 ~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~ 308 (441)
+.+++++..+.+.+...+ .+.|++...++.-+++++.+=|.+.. -.+.|++.++|+.+.++.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~~v~~~~ekp~~~~--------~~~~~~Giyi~~~~~l~~l~ 187 (233)
T cd06425 124 HKKHGAEGTILVTKVEDP-SKYGVVVHDENTGRIERFVEKPKVFV--------GNKINAGIYILNPSVLDRIP 187 (233)
T ss_pred HHHcCCCEEEEEEEcCCc-cccCeEEEcCCCCEEEEEEECCCCCC--------CCEEEEEEEEECHHHHHhcc
Confidence 888899988877755443 45677665431225667765444321 24679999999999886654
No 29
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.17 E-value=1.1e-09 Score=102.97 Aligned_cols=175 Identities=17% Similarity=0.226 Sum_probs=110.1
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
+|+||||.||||+. ..||+++|+ .|+|++++.++++.... +.-++++..+..+.+.+++.....+..++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i-~g~pli~~~l~~l~~~g------~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPV-AGRPFLEYLLEYLARQG------ISRIVLSVGYLAEQIEEYFGDGYRGGIRIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEE-CCcchHHHHHHHHHHCC------CCEEEEEcccCHHHHHHHHcCccccCceEE
Confidence 47999999999975 689999999 78999999999988643 454555555667788888875321122221
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNHLI 237 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~ 237 (441)
+ . ....+.|+++. +...+...+-+++++.+.|++.. .|. .++-.+.
T Consensus 74 ~----------------~--------~~~~~~G~~~~--------l~~a~~~~~~~~~lv~~~D~~~~-~~~~~~l~~~~ 120 (223)
T cd06915 74 Y----------------V--------IEPEPLGTGGA--------IKNALPKLPEDQFLVLNGDTYFD-VDLLALLAALR 120 (223)
T ss_pred E----------------E--------ECCCCCcchHH--------HHHHHhhcCCCCEEEEECCcccC-CCHHHHHHHHH
Confidence 1 0 01245677652 22222222347899999999553 233 4455556
Q ss_pred HcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 238 ~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
+.++++++.+.+...+.. -|.+.. .+|+ +.++.+-|... ...+.|++.++|+.+.++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~~~v~~d~~~~--v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~~ 180 (223)
T cd06915 121 ASGADATMALRRVPDASR-YGNVTVDGDGR--VIAFVEKGPGA--------APGLINGGVYLLRKEILAEI 180 (223)
T ss_pred hCCCcEEEEEEECCCCCc-ceeEEECCCCe--EEEEEeCCCCC--------CCCcEEEEEEEECHHHHhhC
Confidence 677888877765544433 444432 3343 45555432211 23467999999999988764
No 30
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.17 E-value=1.2e-09 Score=103.60 Aligned_cols=173 Identities=18% Similarity=0.141 Sum_probs=111.0
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
+|+||||.||||+. +.||+++|+ .|++++++.++.+.+.+ +.-+++...+..+.+.+++.+ ...+.++.
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi-~g~~li~~~l~~l~~~g------i~~i~iv~~~~~~~i~~~~~~-~~~~~~i~ 73 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPV-AGKPLIDHALDRLAAAG------IRRIVVNTHHLADQIEAHLGD-SRFGLRIT 73 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeE-CCEEHHHHHHHHHHHCC------CCEEEEEccCCHHHHHHHHhc-ccCCceEE
Confidence 58999999999975 789999999 78999999999999864 666666777888899999876 22233333
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNHLI 237 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~ 237 (441)
+..| . ..+.|+|+. +...+..-+.++++|.+.|++... |. .++-.+.
T Consensus 74 ~~~~--------------------~---~~~~g~~~~--------l~~~~~~~~~~~~lv~~~D~i~~~-~~~~~~~~~~ 121 (221)
T cd06422 74 ISDE--------------------P---DELLETGGG--------IKKALPLLGDEPFLVVNGDILWDG-DLAPLLLLHA 121 (221)
T ss_pred EecC--------------------C---CcccccHHH--------HHHHHHhcCCCCEEEEeCCeeeCC-CHHHHHHHHH
Confidence 2110 0 135577652 222222223378999999997644 43 4555555
Q ss_pred --HcCCcceEEEeeeccCCccceEEEEe-CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHH
Q 013550 238 --QNKNEYCMEVTPKTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (441)
Q Consensus 238 --~~~~~~~~~vv~k~~~dekgGvl~~~-~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~ 308 (441)
..++.+++.+++...+. ..|++... +|+ +.++.+-|+ -...|++.+.|+-+.+..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~-~~g~v~~d~~~~--v~~~~~~~~-----------~~~~~~Giyi~~~~~l~~l~ 181 (221)
T cd06422 122 WRMDALLLLLPLVRNPGHN-GVGDFSLDADGR--LRRGGGGAV-----------APFTFTGIQILSPELFAGIP 181 (221)
T ss_pred hccCCCceEEEEEEcCCCC-CcceEEECCCCc--EeecccCCC-----------CceEEEEEEEEcHHHHhhCC
Confidence 34555555554443333 34665543 343 444432221 14679999999988777653
No 31
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.16 E-value=1.8e-09 Score=108.16 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=115.8
Q ss_pred CeEEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhCCCC
Q 013550 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKSN 154 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~~~~ 154 (441)
.+-+|+||||.||||.. ..||+|+|| .||+++++.++.+...+ +. ++|.+...-.+...++|.+...+.
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv-~gkPmI~~~l~~l~~aG------i~~I~ii~~~~~~~~~~~~l~~g~~~g 75 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAG------IRDILIISTPQDTPRFQQLLGDGSQWG 75 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEE-CCEEHHHHHHHHHHHCC------CCEEEEEecCCchHHHHHHHcCccccC
Confidence 46789999999999985 889999999 88999999999998753 44 444665555566777776533333
Q ss_pred CceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHH
Q 013550 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KIL 233 (441)
Q Consensus 155 ~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~l 233 (441)
.++.+. .+..|.|.|+.+.. ...++. +-+ +++.+.||+....|. .++
T Consensus 76 ~~i~y~------------------------~q~~~~Gta~Al~~------a~~~i~-~~~-~~lv~gD~i~~~~~l~~ll 123 (292)
T PRK15480 76 LNLQYK------------------------VQPSPDGLAQAFII------GEEFIG-GDD-CALVLGDNIFYGHDLPKLM 123 (292)
T ss_pred ceeEEE------------------------ECCCCCCHHHHHHH------HHHHhC-CCC-EEEEECCeeeeccCHHHHH
Confidence 444332 22358899985532 222332 224 566789994333354 567
Q ss_pred HHHHHcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 234 NHLIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 234 g~~~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
..+.+++.++.+-+.+..+|.+ -|++.. .+|+ ++++.|=|.. ..-.+.|++.++|+-+.++.+
T Consensus 124 ~~~~~~~~~~tv~~~~v~~p~~-yGvv~~d~~g~--v~~i~EKP~~--------p~s~~a~~GiY~~~~~v~~~~ 187 (292)
T PRK15480 124 EAAVNKESGATVFAYHVNDPER-YGVVEFDQNGT--AISLEEKPLQ--------PKSNYAVTGLYFYDNDVVEMA 187 (292)
T ss_pred HHHHhCCCCeEEEEEEcCCccc-CcEEEECCCCc--EEEEEECCCC--------CCCCEEEEEEEEEChHHHHHH
Confidence 7777777777766555555544 566554 3454 4444443321 123468999999998876554
No 32
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.15 E-value=1.4e-09 Score=104.73 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 81 avv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
.+|+||||.||||+. ..||+++|+ .|++++++.++.+.+.+ + -.+++.++..-.+.+.+++......+.++
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv-~~~pli~~~l~~l~~~g----i-~~i~vv~~~~~~~~~~~~l~~~~~~~~~i 75 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPV-YDKPMIYYPLSTLMLAG----I-REILIISTPEDLPLFKELLGDGSDLGIRI 75 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEE-CCEEhHHHHHHHHHHCC----C-CEEEEEeCcchHHHHHHHHhcccccCceE
Confidence 479999999999986 789999999 69999999999988653 2 14556666655677888887533223333
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNHL 236 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~ 236 (441)
.+ .....|.|.|+...+-. + ++ +-+.++|.+.|++....|. .++-++
T Consensus 76 ~~------------------------~~~~~~~G~~~al~~a~-----~-~~--~~~~~lv~~gD~~~~~~~~~~~~~~~ 123 (240)
T cd02538 76 TY------------------------AVQPKPGGLAQAFIIGE-----E-FI--GDDPVCLILGDNIFYGQGLSPILQRA 123 (240)
T ss_pred EE------------------------eeCCCCCCHHHHHHHHH-----H-hc--CCCCEEEEECCEEEccHHHHHHHHHH
Confidence 21 01124567776332111 1 11 2255778899994332233 455566
Q ss_pred HHcCCcceEEEeeeccCCccceEEEEe-CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 237 IQNKNEYCMEVTPKTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~dekgGvl~~~-~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
.++++++.+-+.+...+. .-|++... +|+ ++++.+=|.. ..-...|++.+.|+-+.++ .++
T Consensus 124 ~~~~~~~~~~~~~~~~~~-~~g~v~~d~~g~--v~~~~ekp~~--------~~~~~~~~Giyi~~~~~l~-~l~ 185 (240)
T cd02538 124 AAQKEGATVFGYEVNDPE-RYGVVEFDENGR--VLSIEEKPKK--------PKSNYAVTGLYFYDNDVFE-IAK 185 (240)
T ss_pred HhcCCCcEEEEEECCchh-cCceEEecCCCc--EEEEEECCCC--------CCCCeEEEEEEEECHHHHH-HHH
Confidence 666788776665544443 34665543 453 5555443322 1123679999999988774 443
No 33
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.13 E-value=4.7e-09 Score=100.35 Aligned_cols=177 Identities=16% Similarity=0.190 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCc
Q 013550 80 LVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (441)
Q Consensus 80 vavv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~ 156 (441)
+.+|+||||.||||+ ...||+++|+ .|++++++.++.+.+.+ + -.++|.++. ..+.+.+++++...++.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i-~g~~li~~~l~~l~~~~----~-~~i~vv~~~-~~~~~~~~~~~~~~~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPV-AGKPIIQYAIEDLREAG----I-EDIGIVVGP-TGEEIKEALGDGSRFGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEE-CCcchHHHHHHHHHHCC----C-CEEEEEcCC-CHHHHHHHhcchhhcCCe
Confidence 357999999999997 4789999999 89999999999988642 2 145666666 677888888764323334
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHHHH
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNH 235 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~ 235 (441)
+.+..| ..|.|.|+... ..+..-+-..+.+.+.|.+... |. .++-.
T Consensus 74 i~~~~~------------------------~~~~g~~~sl~--------~a~~~i~~~~~li~~~D~~~~~-~~~~~~~~ 120 (236)
T cd04189 74 ITYILQ------------------------EEPLGLAHAVL--------AARDFLGDEPFVVYLGDNLIQE-GISPLVRD 120 (236)
T ss_pred EEEEEC------------------------CCCCChHHHHH--------HHHHhcCCCCEEEEECCeecCc-CHHHHHHH
Confidence 432111 13557666322 1111111234566888996533 32 45556
Q ss_pred HHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 236 ~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
+.++++++++.+.+...+ ..-|++...+| .+.++.+-|.+ ....+.|++.++|+-+.++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~~~g~~~~d~~--~v~~~~ek~~~--------~~~~~~~~Giy~~~~~~~~~l 181 (236)
T cd04189 121 FLEEDADASILLAEVEDP-RRFGVAVVDDG--RIVRLVEKPKE--------PPSNLALVGVYAFTPAIFDAI 181 (236)
T ss_pred HHhcCCceEEEEEECCCc-ccceEEEEcCC--eEEEEEECCCC--------CCCCEEEEEEEEeCHHHHHHH
Confidence 667788887777654444 33466554445 56666554422 113468999999998777544
No 34
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.12 E-value=2.3e-09 Score=113.15 Aligned_cols=184 Identities=15% Similarity=0.115 Sum_probs=114.1
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
.++..|+||||.||||+...||+++|+ .|+|++++.++++.+.+ + -++++.+++ ..+.+.+++.+.. .+
T Consensus 2 ~~~~avIlAaG~g~Rl~~~~pK~l~pi-~g~pli~~~l~~l~~~g----i-~~iiiv~~~-~~~~i~~~~~~~~----~i 70 (459)
T PRK14355 2 NNLAAIILAAGKGTRMKSDLVKVMHPL-AGRPMVSWPVAAAREAG----A-GRIVLVVGH-QAEKVREHFAGDG----DV 70 (459)
T ss_pred CcceEEEEcCCCCcccCCCCCceecee-CCccHHHHHHHHHHhcC----C-CeEEEEECC-CHHHHHHHhccCC----ce
Confidence 367889999999999998899999999 88999999999988753 2 245666664 4666777775421 22
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~ 235 (441)
.+..| ..|.|+|+...+- ++.+ +..-++++|.+.|+ +....|. .++.+
T Consensus 71 ~~~~~------------------------~~~~Gt~~al~~a-----~~~l-~~~~~~vlv~~gD~p~~~~~~i~~l~~~ 120 (459)
T PRK14355 71 SFALQ------------------------EEQLGTGHAVACA-----APAL-DGFSGTVLILCGDVPLLRAETLQGMLAA 120 (459)
T ss_pred EEEec------------------------CCCCCHHHHHHHH-----HHHh-hccCCcEEEEECCccCcCHHHHHHHHHH
Confidence 22111 1355777633221 2222 22247899999999 5444342 45566
Q ss_pred HHHcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 236 LIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 236 ~~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
+..+++++.+...+...+.. -|.+.. .+|+ ++++.+-|+..-.+ ....+.|++.++|+-+++.+.++
T Consensus 121 ~~~~~~~~~v~~~~~~~~~~-~g~v~~d~~g~--v~~~~ek~~~~~~~----~~~~~~~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 121 HRATGAAVTVLTARLENPFG-YGRIVRDADGR--VLRIVEEKDATPEE----RSIREVNSGIYCVEAAFLFDAIG 188 (459)
T ss_pred HHhcCCcEEEEEEEcCCCCc-CCEEEEcCCCC--EEEEEEcCCCChhH----hhccEEEEEEEEEeHHHHHHHHH
Confidence 66667776665555545543 355433 3444 44554433211010 12346799999999988766664
No 35
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.11 E-value=2.3e-09 Score=107.00 Aligned_cols=175 Identities=15% Similarity=0.142 Sum_probs=114.0
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
+|+||||.||||.. ..||+|+|| .||+++++.++.+...+ +. ++|.+..+..+.++++|.+...++.++
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv-~gkPmI~~~L~~l~~aG------i~~I~iv~~~~~~~~~~~~lg~g~~~g~~i 74 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPI-YDKPMIYYPLSTLMLAG------IRDILIISTPQDTPRFQQLLGDGSQWGVNL 74 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEE-CCEEhHHHHHHHHHHCC------CCEEEEEecCCcHHHHHHHhccccccCceE
Confidence 58999999999975 889999999 88999999999998754 44 445666666677777776543344555
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNHL 236 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~ 236 (441)
.+..| ..|.|.|+.+..- ..++ +-+..++.+.||+....|. .++-.+
T Consensus 75 ~~~~q------------------------~~~~Gta~al~~a------~~~l--~~~~~~li~gD~i~~~~~l~~ll~~~ 122 (286)
T TIGR01207 75 SYAVQ------------------------PSPDGLAQAFIIG------EDFI--GGDPSALVLGDNIFYGHDLSDLLKRA 122 (286)
T ss_pred EEEEc------------------------cCCCCHHHHHHHH------HHHh--CCCCEEEEECCEeccccCHHHHHHHH
Confidence 43222 2578998854322 1222 3344566689994333353 566667
Q ss_pred HHcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHH
Q 013550 237 IQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~ 306 (441)
.++++++.+-+.+..+|.+ .|++.. .+|+ ++++.|=|.. ..-.+.|++.++|+-+.++.
T Consensus 123 ~~~~~~~ti~~~~v~~p~~-yGvv~~d~~g~--V~~i~EKp~~--------~~s~~~~~GiYi~~~~i~~~ 182 (286)
T TIGR01207 123 AARESGATVFAYQVSDPER-YGVVEFDSNGR--AISIEEKPAQ--------PKSNYAVTGLYFYDNRVVEI 182 (286)
T ss_pred HhcCCCcEEEEEEccCHHH-CceEEECCCCe--EEEEEECCCC--------CCCCEEEEEEEEEchHHHHH
Confidence 7777777766655555544 466654 3454 4444443321 12246899999999886543
No 36
>PRK10122 GalU regulator GalF; Provisional
Probab=99.11 E-value=6e-09 Score=104.55 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=115.8
Q ss_pred CCeEEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCC-
Q 013550 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS- 153 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~- 153 (441)
.++.+|+||||.||||+ ...||+|+|| .||++++++++.+...+ +--++....+..+.+.+||.....+
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi-~gkpiI~~~l~~l~~~G------i~~i~iv~~~~~~~i~~~~~~~~~l~ 74 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPI-VDKPMIQYIVDEIVAAG------IKEIVLVTHASKNAVENHFDTSYELE 74 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEE-CCEEHHHHHHHHHHHCC------CCEEEEEcCCChHHHHHHHhcchhHH
Confidence 46789999999999998 4789999999 88999999999999864 4444444556788899988631100
Q ss_pred -------CCceEEEeeccc-eeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCccc
Q 013550 154 -------NVEIHTFNQSQY-PRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLG 225 (441)
Q Consensus 154 -------~~~i~~f~Q~~~-P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~ 225 (441)
+....-..|... |-+ . +. +..+..|.|+|+.. +..+.--+-+..+|.+.|++.
T Consensus 75 ~~~~~~~k~~~l~~~~~~~~~~~----~--i~-----~~~q~~~lGtg~al--------~~a~~~l~~~~fvvi~gD~l~ 135 (297)
T PRK10122 75 SLLEQRVKRQLLAEVQSICPPGV----T--IM-----NVRQGQPLGLGHSI--------LCARPAIGDNPFVVVLPDVVI 135 (297)
T ss_pred HHHhhcchhhhHHhhhhccCCCc----e--EE-----EeecCCcCchHHHH--------HHHHHHcCCCCEEEEECCeec
Confidence 000000000000 000 0 00 12223688999843 222222233445677799975
Q ss_pred cc-------ccH-HHHHHHHHcCCcceEEEeeeccCCccceEEEEe-----CCee-EEEEeecCChhhhhhhccCCCcce
Q 013550 226 AI-------VDL-KILNHLIQNKNEYCMEVTPKTLADVKGGTLISY-----EGKV-QLLEIAQVPDEHVNEFKSIEKFKI 291 (441)
Q Consensus 226 ~~-------~Dp-~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~-----~g~~-~lvEysq~~~~~~~~~~~~~~~~~ 291 (441)
.. .|. .++.++.++++++.+-......+ ...|++... +|.. +++++.|=|..... ..-..
T Consensus 136 ~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~-~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~-----~~s~~ 209 (297)
T PRK10122 136 DDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDL-SEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT-----LDSDL 209 (297)
T ss_pred cCccccccchhHHHHHHHHHHhCCcEEEEEECCCCC-CCceEEEecCcccCCCCeeeEEEEEECCCCccc-----CCccE
Confidence 31 233 45666777777743332222233 445776652 4543 66676654432110 11236
Q ss_pred EEEeeeeeeHHHHHHHH
Q 013550 292 FNTNNLWVNLKAIKRLV 308 (441)
Q Consensus 292 fNtnn~~~~l~~l~~~~ 308 (441)
.|++.+.|+-+.+..+.
T Consensus 210 ~~~GiYi~~~~i~~~l~ 226 (297)
T PRK10122 210 MAVGRYVLSADIWPELE 226 (297)
T ss_pred EEEEEEEECHHHHHHHH
Confidence 89999999988777653
No 37
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.6e-09 Score=103.46 Aligned_cols=226 Identities=16% Similarity=0.220 Sum_probs=154.7
Q ss_pred CeEEEEEcCC--CCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhC-C
Q 013550 79 KLVVLKLNGG--LGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS-K 152 (441)
Q Consensus 79 kvavv~LaGG--lGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~-~ 152 (441)
++..|+|-|| .|||.. ++.||+++|+ .|.+..+..+.+..++. .+--+++.-|+-.+.-..|+..-. .
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpi-aG~pmI~Hhi~ac~qi~-----~l~eI~LvGFy~e~~f~~fis~~~~e 75 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPI-AGVPMIHHHISACKQIS-----GLAEILLVGFYEERVFTDFISAIQQE 75 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCcccc-CCcchhhhhHHHHhccc-----chhheeEEecccchHHHHHHHHHHhh
Confidence 3455666787 599986 6999999999 99999999998888764 356678888888888888887733 2
Q ss_pred CCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHH
Q 013550 153 SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKI 232 (441)
Q Consensus 153 ~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~ 232 (441)
++..|. +-.|.+|+|+||-...+ -|..++---..+||.|.|--+...-+.+
T Consensus 76 ~~~pvr------------------------YL~E~~plGtaGgLyhF-----rdqIl~g~ps~vFvlnaDVCcsfPl~~m 126 (407)
T KOG1460|consen 76 FKVPVR------------------------YLREDNPLGTAGGLYHF-----RDQILAGSPSAVFVLNADVCCSFPLQDM 126 (407)
T ss_pred cccchh------------------------hhccCCCCCcccceeeh-----hhHHhcCCCceEEEEecceecCCcHHHH
Confidence 333332 45667999998844333 3455555567999999999888778899
Q ss_pred HHHHHHcCCcceEEEeeecc-CCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhc
Q 013550 233 LNHLIQNKNEYCMEVTPKTL-ADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAD 311 (441)
Q Consensus 233 lg~~~~~~~~~~~~vv~k~~-~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~ 311 (441)
+..+...+..+.|.++..+. ....-|.++..-..-+++-|.+=|..-+.+ ..|++.+.|+-+.++.+-+-.
T Consensus 127 l~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfvSd--------~InCGvYlF~~eif~~i~~v~ 198 (407)
T KOG1460|consen 127 LEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSD--------IINCGVYLFTPEIFNAIAEVY 198 (407)
T ss_pred HHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcchhhhc--------ccceeEEEecHHHHHHHHHHH
Confidence 99998899999887764433 223457777654444688888877665443 579999999998876655431
Q ss_pred c--cCccccccccccC----C-CCcceeehhhhhhH--hhhhhcccc
Q 013550 312 A--LKMEIIPNPKEVD----G-IKVLQLETAAGAAI--RSDLYTLAD 349 (441)
Q Consensus 312 ~--~~lp~~vn~K~i~----~-~~~iqlEta~g~ai--~sDly~~~~ 349 (441)
. -++. -..|..+ + ..-++||+-+-+.. ...+|..+.
T Consensus 199 ~q~~~~~--~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t 243 (407)
T KOG1460|consen 199 RQRQDLL--EVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYET 243 (407)
T ss_pred HHHHhhh--hhhhcccccCCCccceEEeechhhhhhcCCCceEEEec
Confidence 1 1110 0112222 2 34588998665555 445565554
No 38
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.10 E-value=5.7e-09 Score=109.57 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEE
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTF 160 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f 160 (441)
.+|+||||.||||+.+.||+++|+ .|++++++.++.+.... -.++|.++.. .+.+.+++.+ .+.++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v-~gkpli~~~l~~l~~~~------~~i~vv~~~~-~~~i~~~~~~------~~~~~ 67 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKI-SGKPMINWVIDTAKKVA------QKVGVVLGHE-AELVKKLLPE------WVKIF 67 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEE-CCeeHHHHHHHHHHhcC------CcEEEEeCCC-HHHHHHhccc------ccEEE
Confidence 468999999999998899999999 89999999999888742 2355555543 4455554432 12222
Q ss_pred eeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHHHH
Q 013550 161 NQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLIQ 238 (441)
Q Consensus 161 ~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~~ 238 (441)
.| ..|.|.++..... ++.+ . .-+++++.+.|+ +....|. .++.++.+
T Consensus 68 ~~------------------------~~~~g~~~ai~~a-----~~~l-~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 68 LQ------------------------EEQLGTAHAVMCA-----RDFI-E-PGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred ec------------------------CCCCChHHHHHHH-----HHhc-C-cCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 22 1345666533211 1112 1 247899999999 5444343 35666667
Q ss_pred cCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 239 NKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 239 ~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
+++++.+.+++...+.. -|.+...+|+...+|...-+.+. ......|++.++|+.+.|.+.++
T Consensus 117 ~~~d~ti~~~~~~~~~~-~g~v~~d~g~v~~~e~~~~~~~~-------~~~~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 117 KGADVTILVADLEDPTG-YGRIIRDGGKYRIVEDKDAPEEE-------KKIKEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred cCCeEEEEEEEcCCCCC-cEEEEEcCCeEEEEECCCCChHH-------hcCcEEEeEEEEEEHHHHHHHHH
Confidence 78888777665555544 45555456776666654322111 11235799999999998887764
No 39
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.09 E-value=5e-09 Score=104.52 Aligned_cols=187 Identities=17% Similarity=0.227 Sum_probs=138.4
Q ss_pred CCeEEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCC-C
Q 013550 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK-S 153 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~-~ 153 (441)
..++.|+|-||-||||. ++.||++.|+. .+++++++++.+..-+ + -..++.|+++-.+-.+++.+.|.. +
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg-n~pmI~hqieal~nsG----i-~~I~la~~y~s~sl~~~~~k~y~~~l 81 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG-NKPMILHQIEALINSG----I-TKIVLATQYNSESLNRHLSKAYGKEL 81 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccC-cchhhHHHHHHHHhCC----C-cEEEEEEecCcHHHHHHHHHHhhhcc
Confidence 67899999999999996 58999999994 9999999988887654 1 357888888877777777777753 5
Q ss_pred CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCc-EEEEEcCCcccccccHHH
Q 013550 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE-YVFAANSDNLGAIVDLKI 232 (441)
Q Consensus 154 ~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~e-yi~v~nvDNL~~~~Dp~~ 232 (441)
+++|.+ .| +.-|.|+.|-..+-+ +.+...-+ .+||.|+|-+++..--.+
T Consensus 82 gVei~~-s~-----------------------eteplgtaGpl~laR------~~L~~~~~~~ffVLnsDvi~~~p~~~~ 131 (371)
T KOG1322|consen 82 GVEILA-ST-----------------------ETEPLGTAGPLALAR------DFLWVFEDAPFFVLNSDVICRMPYKEM 131 (371)
T ss_pred ceEEEE-Ee-----------------------ccCCCcccchHHHHH------HHhhhcCCCcEEEecCCeeecCCHHHH
Confidence 677653 22 223778777553332 22222222 699999999999866789
Q ss_pred HHHHHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 233 lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
+.+|.++++|...-|++...|.. -|++..+.+.-++..++|=|++.+. .-.|.+.|.|+-+.|.+++-
T Consensus 132 vqfH~~~gae~TI~~t~vdepSk-yGvv~~d~~~grV~~F~EKPkd~vs--------nkinaGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 132 VQFHRAHGAEITIVVTKVDEPSK-YGVVVIDEDTGRVIRFVEKPKDLVS--------NKINAGIYILNPEVLDRILL 199 (371)
T ss_pred HHHHHhcCCceEEEEEeccCccc-cceEEEecCCCceeEehhCchhhhh--------ccccceEEEECHHHHhHhhh
Confidence 99999999999999887777655 5555544334457777777775433 23579999999999999873
No 40
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.09 E-value=5.1e-09 Score=102.07 Aligned_cols=181 Identities=17% Similarity=0.228 Sum_probs=116.1
Q ss_pred EEEEcCC--CCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhC-CCCC
Q 013550 82 VLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS-KSNV 155 (441)
Q Consensus 82 vv~LaGG--lGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~-~~~~ 155 (441)
+|+|||| .||||+. ..||+|+|+ .|++++++.++.+..+. .+.-+++...+..+.+.+++.+.. ..+.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv-~g~plI~~~l~~l~~~~-----gi~~i~iv~~~~~~~i~~~l~~~~~~~~~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPV-AGKPMIHHHIEACAKVP-----DLKEVLLIGFYPESVFSDFISDAQQEFNV 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeE-CCeeHHHHHHHHHHhcC-----CCcEEEEEecCCHHHHHHHHHhcccccCc
Confidence 3788999 8999986 889999999 88999999999998741 255555555567888999997642 1222
Q ss_pred ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHHH
Q 013550 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILN 234 (441)
Q Consensus 156 ~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg 234 (441)
.+.+. .+..|.|+|+..... .+.+....-++++|.++|++... |. .++.
T Consensus 75 ~i~~~------------------------~~~~~~Gt~~al~~a-----~~~l~~~~~~~~lv~~gD~~~~~-dl~~~~~ 124 (257)
T cd06428 75 PIRYL------------------------QEYKPLGTAGGLYHF-----RDQILAGNPSAFFVLNADVCCDF-PLQELLE 124 (257)
T ss_pred eEEEe------------------------cCCccCCcHHHHHHH-----HHHhhccCCCCEEEEcCCeecCC-CHHHHHH
Confidence 32211 112467888743221 22222223578999999998654 54 6778
Q ss_pred HHHHcCCcceEEEeeec-cCCccceEEEEe--CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHH
Q 013550 235 HLIQNKNEYCMEVTPKT-LADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (441)
Q Consensus 235 ~~~~~~~~~~~~vv~k~-~~dekgGvl~~~--~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~ 308 (441)
++.++++++.+-+.+.. .....-|++... +|+ +.++.+-|... .-...|++.++|+.+.+..+.
T Consensus 125 ~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~--v~~~~Ekp~~~--------~~~~~~~Giyi~~~~~~~~i~ 191 (257)
T cd06428 125 FHKKHGASGTILGTEASREQASNYGCIVEDPSTGE--VLHYVEKPETF--------VSDLINCGVYLFSPEIFDTIK 191 (257)
T ss_pred HHHHcCCCEEEEEEEccccccccccEEEEeCCCCe--EEEEEeCCCCc--------ccceEEEEEEEECHHHHHHHh
Confidence 88888888776654432 112334665543 344 44554433321 113679999999999875543
No 41
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.09 E-value=1.3e-08 Score=106.95 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEE
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHT 159 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~ 159 (441)
+++|+||||.|||||.+.||.|+|+ .|+|++++.++.+.+.. . ...++.+.. ..+.+.++++++. .+.+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v-~gkpli~~~l~~l~~~g----~-~~iivvv~~-~~~~i~~~~~~~~----~i~~ 70 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPL-GGKSLVERVLDSCEELK----P-DRRLVIVGH-QAEEVEQSLAHLP----GLEF 70 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEE-CChhHHHHHHHHHHhCC----C-CeEEEEECC-CHHHHHHHhcccC----CeEE
Confidence 5789999999999998899999999 89999999999998753 2 245565554 3455666665431 2222
Q ss_pred EeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHHH
Q 013550 160 FNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLI 237 (441)
Q Consensus 160 f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~ 237 (441)
..| ..+.|.++.+... ++.+. ..-++++|.+.|. +....+. .++..+.
T Consensus 71 v~~------------------------~~~~G~~~sv~~~-----~~~l~-~~~~~vlV~~~D~P~i~~~~l~~ll~~~~ 120 (450)
T PRK14360 71 VEQ------------------------QPQLGTGHAVQQL-----LPVLK-GFEGDLLVLNGDVPLLRPETLEALLNTHR 120 (450)
T ss_pred EEe------------------------CCcCCcHHHHHHH-----HHHhh-ccCCcEEEEeCCccccCHHHHHHHHHHHH
Confidence 111 0245665533221 22222 2235789999999 4432222 3445555
Q ss_pred HcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 238 ~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
+.++++.+.+.+..++.. -|.+.. .+|+ +.++.+=|...... ..-.+.|++.++|+.+.+.+++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~g~~~~d~~g~--v~~~~ek~~~~~~~----~~~~~~~~Giy~f~~~~l~~~~~~ 187 (450)
T PRK14360 121 SSNADVTLLTARLPNPKG-YGRVFCDGNNL--VEQIVEDRDCTPAQ----RQNNRINAGIYCFNWPALAEVLPK 187 (450)
T ss_pred hcCCcEEEEEEecCCCCC-ccEEEECCCCC--EEEEEECCCCChhH----hcCcEEEEEEEEEEHHHHHHHHhh
Confidence 667776654444444544 344433 4454 44444332211111 112367999999999888887753
No 42
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.07 E-value=4.6e-09 Score=98.49 Aligned_cols=177 Identities=16% Similarity=0.203 Sum_probs=113.1
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
+|+||||.||||+- ..||+++|+ .|++++++.++.+...+ + -.++|.+.. ..+.+.+++.+.......+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v-~g~pli~~~l~~l~~~g----~-~~i~vv~~~-~~~~i~~~~~~~~~~~~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI-AGKPILEYIIERLARAG----I-DEIILVVGY-LGEQIEEYFGDGSKFGVNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEE-CCeeHHHHHHHHHHHCC----C-CEEEEEecc-CHHHHHHHHcChhhcCceEE
Confidence 47899999999984 689999999 88999999999998753 1 234555554 56677777765432222332
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~ 238 (441)
+.. ...|.|.++.. +..+....-++++|.+.|++...-.-.++.++.+
T Consensus 74 ~~~------------------------~~~~~g~~~al--------~~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~ 121 (217)
T cd04181 74 YVV------------------------QEEPLGTAGAV--------RNAEDFLGDDDFLVVNGDVLTDLDLSELLRFHRE 121 (217)
T ss_pred EEe------------------------CCCCCccHHHH--------HHhhhhcCCCCEEEEECCeecCcCHHHHHHHHHh
Confidence 211 11346776633 2222222467899999999765433356677777
Q ss_pred cCCcceEEEeeeccCCccceEEEEe-CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 239 NKNEYCMEVTPKTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 239 ~~~~~~~~vv~k~~~dekgGvl~~~-~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
+++++++-+.+.. .....|.+... +| +++++.+-|... .-...|++.++|+-+.+ +.++
T Consensus 122 ~~~~~~~~~~~~~-~~~~~~~v~~d~~~--~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~-~~l~ 181 (217)
T cd04181 122 KGADATIAVKEVE-DPSRYGVVELDDDG--RVTRFVEKPTLP--------ESNLANAGIYIFEPEIL-DYIP 181 (217)
T ss_pred cCCCEEEEEEEcC-CCCcceEEEEcCCC--cEEEEEECCCCC--------CCCEEEEEEEEECHHHH-Hhhh
Confidence 8888877765544 34445665443 24 455555433221 12467999999999877 4443
No 43
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.06 E-value=3.1e-09 Score=101.07 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCc-CEEEeeCCCChhHHHHHHHHhCCCCC-
Q 013550 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTHDDTSKIIEKYSKSNV- 155 (441)
Q Consensus 81 avv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~i-Pl~IMtS~~T~e~T~~~l~~~~~~~~- 155 (441)
-+|+||||.||||+ ...||+|+|+ .|++++++.++.+.+.+ + .++|.|. +..+.+.+|+++......
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi-~g~piI~~~l~~l~~~G------i~~I~iv~~-~~~~~i~~~l~~~~~~~~~ 73 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPL-ANVPLIDYTLEFLALNG------VEEVFVFCC-SHSDQIKEYIEKSKWSKPK 73 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEE-CCEehHHHHHHHHHHCC------CCeEEEEeC-CCHHHHHHHHhhccccccc
Confidence 36899999999998 4889999999 88999999999998854 4 3566666 567889999988543211
Q ss_pred ----ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-
Q 013550 156 ----EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL- 230 (441)
Q Consensus 156 ----~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp- 230 (441)
.+.+ +. ...+.|.|+.++.+...+.+ .+++.+.++|++... |.
T Consensus 74 ~~~~~i~~----------------~~--------~~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~-dl~ 121 (217)
T cd04197 74 SSLMIVII----------------IM--------SEDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNI-DLK 121 (217)
T ss_pred cCcceEEE----------------Ee--------CCCcCccchHHHHHhhcccc-------CCCEEEEeCCeeecc-CHH
Confidence 1111 11 11356777766554433222 356789999997753 55
Q ss_pred HHHHHHHHc-----CCcceEEEeeeccCCc-----cceEEEEeCCeeEEEEeecCC
Q 013550 231 KILNHLIQN-----KNEYCMEVTPKTLADV-----KGGTLISYEGKVQLLEIAQVP 276 (441)
Q Consensus 231 ~~lg~~~~~-----~~~~~~~vv~k~~~de-----kgGvl~~~~g~~~lvEysq~~ 276 (441)
.++.++.++ ++++.+-+.+...+.+ .-|++...+..-+++.+.+-|
T Consensus 122 ~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp 177 (217)
T cd04197 122 EILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELP 177 (217)
T ss_pred HHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEeccc
Confidence 677777763 6776665544333332 135555432223455555543
No 44
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.05 E-value=6.1e-09 Score=98.39 Aligned_cols=173 Identities=17% Similarity=0.200 Sum_probs=110.1
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
+|+||||.||||+- ..||+++|+ .|++++++.++++...+ +.-+++......+.+.+++.+......++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~-~g~pli~~~l~~l~~~~------~~~iivv~~~~~~~i~~~~~~~~~~~~~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKV-GGKPILETIIDRFIAQG------FRNFYISVNYLAEMIEDYFGDGSKFGVNIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeE-CCcchHHHHHHHHHHCC------CcEEEEECccCHHHHHHHHCCccccCccEE
Confidence 58999999999973 789999999 88999999999999764 454455555556777777765322222332
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQ 238 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~ 238 (441)
+.. ...|.|.|+....+. +...++++|.+.|++....--.++..+..
T Consensus 74 ~~~------------------------~~~~~g~~~~l~~~~---------~~~~~~~lv~~~D~i~~~~~~~l~~~~~~ 120 (220)
T cd06426 74 YVR------------------------EDKPLGTAGALSLLP---------EKPTDPFLVMNGDILTNLNYEHLLDFHKE 120 (220)
T ss_pred EEE------------------------CCCCCcchHHHHHHH---------hhCCCCEEEEcCCEeeccCHHHHHHHHHh
Confidence 211 113567777543222 22357899999998654322356666666
Q ss_pred cCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 239 NKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 239 ~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
++.++++.+.+ .......|++...+| .+.++.+=|. ...+.|++.++|+.+.++.+
T Consensus 121 ~~~~~~~~~~~-~~~~~~~g~~~~d~~--~v~~~~ek~~----------~~~~~~~Giy~~~~~~~~~i 176 (220)
T cd06426 121 NNADATVCVRE-YEVQVPYGVVETEGG--RITSIEEKPT----------HSFLVNAGIYVLEPEVLDLI 176 (220)
T ss_pred cCCCEEEEEEE-cCCCCcceEEEECCC--EEEEEEECCC----------CCCeEEEEEEEEcHHHHhhc
Confidence 77777765544 333444565544443 4556543221 12457999999999887654
No 45
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.04 E-value=8.5e-09 Score=105.28 Aligned_cols=196 Identities=15% Similarity=0.231 Sum_probs=114.0
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCC-chHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCC--
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV-- 155 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gk-tfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~-- 155 (441)
+|+||||.||||+- +.||+|+|+ .|+ +++++.++.+.+.+ +.-++....+..+.+.++|.+......
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv-~g~~pli~~~l~~l~~~g------i~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 73 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPF-GGKYRIIDFPLSNCINSG------IRRIGVLTQYKSHSLNRHIQRGWDFDGFI 73 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccccee-cceeeEeeehhhhhhhcC------CceEEEEeccChHHHHHHHHhccCccCcc
Confidence 38999999999984 789999999 888 89999999998854 544444555566778888875211111
Q ss_pred --ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HH
Q 013550 156 --EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KI 232 (441)
Q Consensus 156 --~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~ 232 (441)
.+.++ | .... ......|.|+|+...+- ++.+....-++++|.++|++... |. .+
T Consensus 74 ~~~~~~~-~-------------~~~~---~~~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~gD~l~~~-~l~~~ 130 (361)
T TIGR02091 74 DGFVTLL-P-------------AQQR---ESGTDWYQGTADAVYQN-----LDLIEDYDPEYVLILSGDHIYKM-DYEKM 130 (361)
T ss_pred CCCEEEe-C-------------Cccc---CCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEecCCEEEcC-CHHHH
Confidence 11110 0 0000 11223568988743211 12222223478999999997643 33 45
Q ss_pred HHHHHHcCCcceEEEeeec-cCCccceEEEEe-CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 233 LNHLIQNKNEYCMEVTPKT-LADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 233 lg~~~~~~~~~~~~vv~k~-~~dekgGvl~~~-~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
+..+..+++++.+-+.+.. ......|++... +|+ +.++.+=|...... .......+.|++.+.|+-+.+.+.++.
T Consensus 131 l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ekp~~~~~~-~~~~~~~~~~~Giyi~~~~~l~~~l~~ 207 (361)
T TIGR02091 131 LDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGR--IVDFEEKPANPPSI-PGMPDFALASMGIYIFDKDVLKELLEE 207 (361)
T ss_pred HHHHHHcCCCEEEEEEecChHhcccccEEEECCCCC--EEEEEECCCCcccc-cccccccEEeeeEEEEcHHHHHHHHHH
Confidence 6666666666555443321 122345666543 344 45554433111010 011123367999999999988766654
No 46
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.01 E-value=8.3e-09 Score=108.60 Aligned_cols=211 Identities=13% Similarity=0.160 Sum_probs=128.4
Q ss_pred CCeEEEEEcCCCCCcCC---CCCCccceeeCCCC-chHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCC
Q 013550 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG---~~~PK~~l~v~~gk-tfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~ 153 (441)
.++.+|+||||.||||. .+.||+|+|+ .|+ +++|++++.+.+.+ +.-++....+..+.+.+||++...+
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv-~g~~plId~~L~~l~~~G------i~~i~iv~~~~~~~i~~~l~~~~~~ 74 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPI-GGNYRLIDIPMSNCINSG------INKIYVLTQFNSASLNRHLSRAYNF 74 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEe-CCcceEehHHHHHHHhCC------CCEEEEEeccCHHHHHHHHhccCCC
Confidence 57889999999999998 5889999999 665 99999999998754 5555555566788899999853211
Q ss_pred CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HH
Q 013550 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KI 232 (441)
Q Consensus 154 ~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~ 232 (441)
+.... +.++.+..+ .... .......|.|+||....... .+++...++-++++|.+.|++... |. .+
T Consensus 75 ~~~~~-~~~~~~~i~-------~~~q--~~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~gD~v~~~-dl~~l 141 (436)
T PLN02241 75 GNGGN-FGDGFVEVL-------AATQ--TPGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSGDHLYRM-DYMDF 141 (436)
T ss_pred CCCcc-cCCCCEEEc-------CCcc--cCCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecCCeEEcc-CHHHH
Confidence 11100 111111000 0000 00011258999985533321 122111112589999999997654 55 67
Q ss_pred HHHHHHcCCcceEEEeeec--cCCccceEEEEeCCeeEEEEeecCChhhhh-hh------------ccCCCcceEEEeee
Q 013550 233 LNHLIQNKNEYCMEVTPKT--LADVKGGTLISYEGKVQLLEIAQVPDEHVN-EF------------KSIEKFKIFNTNNL 297 (441)
Q Consensus 233 lg~~~~~~~~~~~~vv~k~--~~dekgGvl~~~~g~~~lvEysq~~~~~~~-~~------------~~~~~~~~fNtnn~ 297 (441)
+.++.++++++.+-+.+.. .+ ..-|++.. ++.-+++++.+-|..... .+ .......+.|++.+
T Consensus 142 l~~h~~~~a~~ti~~~~v~~~~~-~~ygvv~~-d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIy 219 (436)
T PLN02241 142 VQKHRESGADITIACLPVDESRA-SDFGLMKI-DDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIY 219 (436)
T ss_pred HHHHHHcCCCEEEEEEecchhhc-CcceEEEE-CCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEE
Confidence 7778888888766554332 23 44577665 333357777776643210 00 00012346799999
Q ss_pred eeeHHHHHHHHHh
Q 013550 298 WVNLKAIKRLVEA 310 (441)
Q Consensus 298 ~~~l~~l~~~~~~ 310 (441)
.|+-+.|..++++
T Consensus 220 i~~~~~l~~ll~~ 232 (436)
T PLN02241 220 VFKKDVLLKLLRW 232 (436)
T ss_pred EEEHHHHHHHHHh
Confidence 9999999887764
No 47
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.98 E-value=4.7e-08 Score=102.35 Aligned_cols=177 Identities=21% Similarity=0.222 Sum_probs=101.2
Q ss_pred EEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEE
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTF 160 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f 160 (441)
-+|+||||.||||+.+.||.++|+ .|+|++++.++.+.... . -.++|.++.. .+.+.+++.++ ++.++
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i-~gkpli~~~l~~l~~~g----~-~~iiiv~~~~-~~~i~~~~~~~-----~i~~~ 69 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPL-AGKPMLEHVIDAARALG----P-QKIHVVYGHG-AEQVRKALANR-----DVNWV 69 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhcee-CCccHHHHHHHHHHhCC----C-CeEEEEECCC-HHHHHHHhcCC-----CcEEE
Confidence 468999999999998899999999 88999999999988643 2 2456666654 66677777653 12221
Q ss_pred eeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC-CCcEEEEEcCCc-ccccccH-HHHHHHH
Q 013550 161 NQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVFAANSDN-LGAIVDL-KILNHLI 237 (441)
Q Consensus 161 ~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~-G~eyi~v~nvDN-L~~~~Dp-~~lg~~~ 237 (441)
.| ..|.|.++. ++..+... .-+++++.+.|. +....+. .++-.+.
T Consensus 70 ~~------------------------~~~~G~~~a--------i~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~ 117 (451)
T TIGR01173 70 LQ------------------------AEQLGTGHA--------VLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHR 117 (451)
T ss_pred Ec------------------------CCCCchHHH--------HHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHh
Confidence 11 123466552 22222221 236899999999 4322222 2222222
Q ss_pred HcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 238 ~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
+ ...++-+.+...+ ...|.+.. .+|+ +.++.+=|+..... ......|++.++|+-+.|.+.++.
T Consensus 118 ~--~~~~~~~~~~~~~-~~~g~v~~d~~g~--v~~~~ek~~~~~~~----~~~~~~~~G~y~~~~~~l~~~l~~ 182 (451)
T TIGR01173 118 Q--NGITLLTAKLPDP-TGYGRIIRENDGK--VTAIVEDKDANAEQ----KAIKEINTGVYVFDGAALKRWLPK 182 (451)
T ss_pred h--CCEEEEEEecCCC-CCCCEEEEcCCCC--EEEEEEcCCCChHH----hcCcEEEEEEEEEeHHHHHHHHHh
Confidence 2 2333333333233 33455543 3454 44443322211100 012356999999999998776653
No 48
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=98.96 E-value=5e-08 Score=94.98 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=112.9
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
+|+||||.||||+. +.||+|+|| .|++++++.++.+.+.+ +.-++....+..+.+.+|+++...+..++.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv-~~~p~i~~~~~~~~~~g------i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 73 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEI-GGRPILWHIMKIYSHYG------HNDFILCLGYKGHVIKEYFLNYFLHNSDVT 73 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEE-CCEEHHHHHHHHHHhCC------CceEEEECCCCHHHHHHHHHhhhhhcCcee
Confidence 47999999999974 789999999 89999999888888754 555566666778999999987542222222
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCC-cEEEEEcCCcccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGK-EYVFAANSDNLGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~-eyi~v~nvDNL~~~~Dp-~~lg~~ 236 (441)
+-.|+.--.+.... +-.+.- .......|.|+|+.+ ...+..-+. ++++|.|.|++... |. .++-++
T Consensus 74 ~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~t~~al--------~~a~~~~~~~~~~lv~~gD~i~~~-dl~~ll~~h 141 (253)
T cd02524 74 IDLGTNRIELHNSD--IEDWKV-TLVDTGLNTMTGGRL--------KRVRRYLGDDETFMLTYGDGVSDV-NINALIEFH 141 (253)
T ss_pred Eeecccceeeeccc--ccccce-eecccCcccccHHHH--------HHHHHhcCCCCeEEEEcCCEEECC-CHHHHHHHH
Confidence 11111000000000 000000 000112367777732 333333333 79999999996543 33 566667
Q ss_pred HHcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 237 IQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
..+++++.+.++. .+ ...|++.. .+|+ +.++.+=|... ....|++.+.++-+.++.+
T Consensus 142 ~~~~~~~tl~~~~--~~-~~~g~v~~d~~g~--V~~~~ekp~~~---------~~~i~~Giyi~~~~l~~~l 199 (253)
T cd02524 142 RSHGKLATVTAVH--PP-GRFGELDLDDDGQ--VTSFTEKPQGD---------GGWINGGFFVLEPEVFDYI 199 (253)
T ss_pred HHcCCCEEEEEec--CC-CcccEEEECCCCC--EEEEEECCCCC---------CceEEEEEEEECHHHHHhh
Confidence 7778888765543 22 33466543 3444 44444433210 1357899999998876543
No 49
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=98.91 E-value=3.3e-08 Score=97.99 Aligned_cols=193 Identities=13% Similarity=0.094 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCcCC----CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCc
Q 013550 81 VVLKLNGGLGTTMG----CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (441)
Q Consensus 81 avv~LaGGlGTRLG----~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~ 156 (441)
.+|+||||.||||. ...||.++++.+++|++|..++++..+. + .-.++|.|+..-++.+.+++++ ...+.+
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~---~-~~~i~vvt~~~~~~~v~~~l~~-~~~~~~ 76 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLV---P-PDRILVVTNEEYRFLVREQLPE-GLPEEN 76 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCC---C-CCcEEEEechHHHHHHHHHHhh-cCCCce
Confidence 47899999999996 4689999999555999999999988752 1 1278888887656667777765 111122
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHH-CCCcEEEEEcCCccccc-ccH-HHH
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDNLGAI-VDL-KIL 233 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~-~G~eyi~v~nvDNL~~~-~Dp-~~l 233 (441)
+. .+..|.|+|+....- ...+.. .+-++++|.+.|.+... .|. ..+
T Consensus 77 ii--------------------------~ep~~~gTa~ai~~a-----~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l 125 (274)
T cd02509 77 II--------------------------LEPEGRNTAPAIALA-----ALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAV 125 (274)
T ss_pred EE--------------------------ECCCCCCcHHHHHHH-----HHHHHhcCCCCeEEEecchhcccCHHHHHHHH
Confidence 11 122456777743211 112222 23578999999996531 111 123
Q ss_pred HHH---HHcCCcceEEEeeeccCCccceEEEEeCC----eeEEEEeecCChhhhh-hhccCCCcceEEEeeeeeeHHHHH
Q 013550 234 NHL---IQNKNEYCMEVTPKTLADVKGGTLISYEG----KVQLLEIAQVPDEHVN-EFKSIEKFKIFNTNNLWVNLKAIK 305 (441)
Q Consensus 234 g~~---~~~~~~~~~~vv~k~~~dekgGvl~~~~g----~~~lvEysq~~~~~~~-~~~~~~~~~~fNtnn~~~~l~~l~ 305 (441)
..+ .+.+..+.+-+.+ +.+....|.+...+. ...+.++-|=|+.... .+-. .+..+.|++.+.|+.+.+.
T Consensus 126 ~~~~~~~~~~~~vt~gi~p-~~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~-~g~~~wNsGiyi~~~~~l~ 203 (274)
T cd02509 126 KKAVEAAEEGYLVTFGIKP-TRPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLE-SGNYLWNSGIFLFRAKTFL 203 (274)
T ss_pred HHHHHHHHcCCEEEEEeee-cCCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhh-cCCeEEECceeeeeHHHHH
Confidence 222 2245666666554 455555677655321 2356666666654322 2211 1334679999999999999
Q ss_pred HHHHhc
Q 013550 306 RLVEAD 311 (441)
Q Consensus 306 ~~~~~~ 311 (441)
+.+++.
T Consensus 204 ~~l~~~ 209 (274)
T cd02509 204 EELKKH 209 (274)
T ss_pred HHHHHH
Confidence 999764
No 50
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=98.89 E-value=6.1e-08 Score=92.02 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=106.9
Q ss_pred EEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEEe
Q 013550 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (441)
Q Consensus 82 vv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~ 161 (441)
+|+||||.||||+...||.++|+ .|+|++++.++++.... + -.++|.++.. ++.+.+++.++ .+.++.
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v-~gkpli~~~i~~l~~~~----i-~~i~iv~~~~-~~~i~~~~~~~-----~~~~~~ 68 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPL-AGKPMLEHVLDAARALG----P-DRIVVVVGHG-AEQVKKALANP-----NVEFVL 68 (229)
T ss_pred CEEEeCCCCccCCCCCChhccee-CCccHHHHHHHHHHhCC----C-CeEEEEECCC-HHHHHHHhCCC-----CcEEEE
Confidence 48999999999998889999999 88999999999987743 2 2456666655 66777766542 222222
Q ss_pred eccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHHHHc
Q 013550 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLIQN 239 (441)
Q Consensus 162 Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~~~ 239 (441)
|. .+.|.++.... .++.+ +.+.+++++.+.|+ +...-|. .++..+.+.
T Consensus 69 ~~------------------------~~~g~~~ai~~-----a~~~~-~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~ 118 (229)
T cd02540 69 QE------------------------EQLGTGHAVKQ-----ALPAL-KDFEGDVLVLYGDVPLITPETLQRLLEAHREA 118 (229)
T ss_pred CC------------------------CCCCCHHHHHH-----HHHhh-ccCCCeEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 10 13455552211 11222 22368899999999 4332222 233444455
Q ss_pred CCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 240 KNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 240 ~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
++++++-+++...+. .-|.+.. .+|+ ++++.+-+.....+ ......|++.++|+.+.+.+.++.
T Consensus 119 ~~~~~~~~~~~~~p~-~~~~~~~~~~~~--v~~~~ek~~~~~~~----~~~~~~~~giy~~~~~~~~~~l~~ 183 (229)
T cd02540 119 GADVTVLTAELEDPT-GYGRIIRDGNGK--VLRIVEEKDATEEE----KAIREVNAGIYAFDAEFLFEALPK 183 (229)
T ss_pred CCcEEEEEEEcCCCC-CccEEEEcCCCC--EEEEEECCCCChHH----HhhceEEeEEEEEEHHHHHHHHHH
Confidence 677776666555553 3455443 3454 44443322110000 112357999999999887776653
No 51
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.89 E-value=6.2e-08 Score=102.23 Aligned_cols=180 Identities=17% Similarity=0.178 Sum_probs=105.9
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||+...||+++|+ .|+|+++..++++.... . -.+++.++. ..+.+++++... ++.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i-~gkpli~~~i~~l~~~g----i-~~i~vv~~~-~~~~i~~~~~~~-----~~~ 72 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTL-AGKPMVQHVIDAANELG----A-QHVHLVYGH-GGDLLKQTLADE-----PLN 72 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhccee-CChhHHHHHHHHHHhcC----C-CcEEEEECC-CHHHHHHhhccC-----CcE
Confidence 57889999999999998899999999 89999999999987642 2 256666664 445566555421 222
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
+. . +..|.|.|+....- ++.+ . .-++++|.+.|. +....|. .++.++
T Consensus 73 ~i---------------~---------~~~~~Gt~~al~~a-----~~~l-~-~~~~vlV~~gD~P~i~~~~i~~l~~~~ 121 (456)
T PRK09451 73 WV---------------L---------QAEQLGTGHAMQQA-----APFF-A-DDEDILMLYGDVPLISVETLQRLRDAK 121 (456)
T ss_pred EE---------------E---------CCCCCCcHHHHHHH-----HHhh-c-cCCcEEEEeCCcccCCHHHHHHHHHHh
Confidence 10 1 11356777633221 1112 1 347899999999 5432232 222222
Q ss_pred HHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
.+.+ .++.+++..++.+ .|++...+|+ +.++.|=|...... ......|++.+.|+-+.|.+.+++
T Consensus 122 ~~~~--~~i~~~~~~~~~~-yG~v~~~~g~--V~~~~EKp~~~~~~----~~~~~~~~GiYi~~~~~l~~~l~~ 186 (456)
T PRK09451 122 PQGG--IGLLTVKLDNPTG-YGRITRENGK--VVGIVEQKDATDEQ----RQIQEINTGILVANGADLKRWLAK 186 (456)
T ss_pred hcCC--EEEEEEEcCCCCC-ceEEEecCCe--EEEEEECCCCChHH----hhccEEEEEEEEEEHHHHHHHHHh
Confidence 2222 3333334444544 5665444554 44444433211110 112468999999999888877653
No 52
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=98.88 E-value=8e-08 Score=93.52 Aligned_cols=203 Identities=12% Similarity=0.053 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 81 avv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
-+|+||||.||||+. ..||+++|+ .|++++++.++.+...+ + -.++|+|+. ..+.+.+||.+......+.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi-~g~pli~~~l~~l~~~g----i-~~v~iv~~~-~~~~i~~~~~~~~~~~~~~ 74 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPI-VDKPLIQYVVEEAVEAG----I-EDILIVTGR-GKRAIEDHFDTSYELEHQL 74 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEE-CCEEHHHHHHHHHHhCC----C-CEEEEEeCC-cHHHHHHHhcccHHHHHHH
Confidence 469999999999975 789999999 78999999999888643 2 145555654 4677888886311000000
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccc--cH-HHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIV--DL-KILN 234 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~--Dp-~~lg 234 (441)
-.++....++. -..+.+...-.......|.|+|+.. +..+..-+-+.++|.++|++.... |. .++.
T Consensus 75 --~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~G~~~al--------~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~ 143 (260)
T TIGR01099 75 --EKRGKEELLKE-VRSISPLATIFYVRQKEQKGLGHAV--------LCAEPFVGDEPFAVILGDDIVVSEEPALKQMID 143 (260)
T ss_pred --HhhhhHHHHHH-hhhccccceEEEEecCCCCCHHHHH--------HHHHHhhCCCCEEEEeccceecCCcHHHHHHHH
Confidence 00000000000 0000000000011123578888833 222211244678899999954322 22 5666
Q ss_pred HHHHcCCcceEEEeeec-cCCccceEEEEe---CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHH
Q 013550 235 HLIQNKNEYCMEVTPKT-LADVKGGTLISY---EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (441)
Q Consensus 235 ~~~~~~~~~~~~vv~k~-~~dekgGvl~~~---~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~ 308 (441)
++.++++++. -+.... ......|++... ++.-+++++.+=|.... ..-...|++.++|+-+.+..+.
T Consensus 144 ~~~~~~~~ii-~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~------~~~~~~~~Giyi~~~~~~~~l~ 214 (260)
T TIGR01099 144 LYEKYGCSII-AVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEE------APSNLAIVGRYVLTPDIFDLLE 214 (260)
T ss_pred HHHHhCCCEE-EEEECChhhcccCceEEeccccCCceeEEEEEECCCCCC------CCCceEEEEEEECCHHHHHHHH
Confidence 7777777752 222211 122345666543 12234555554442110 0113579999999998776654
No 53
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=98.87 E-value=4.9e-08 Score=91.62 Aligned_cols=133 Identities=18% Similarity=0.314 Sum_probs=84.6
Q ss_pred EEEEcCCCCCcCC---CCCCccceeeCCCC-chHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCc-
Q 013550 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE- 156 (441)
Q Consensus 82 vv~LaGGlGTRLG---~~~PK~~l~v~~gk-tfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~- 156 (441)
+|+||||.||||. .+.||+|+|+ .|+ |+++++++.+...+ + -.++|.++. ..+.+.+++.+...++.+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv-~g~~pli~~~l~~l~~~g----i-~~iivv~~~-~~~~i~~~~~~~~~~~~~~ 73 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPF-GGRYRLIDFPLSNMVNSG----I-RNVGVLTQY-KSRSLNDHLGSGKEWDLDR 73 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEE-CCeeeeHHHHHHHHHHCC----C-CEEEEEeCC-ChHHHHHHHhCCCcccCCC
Confidence 3789999999997 4789999999 787 99999999998753 2 245566664 478888888754322111
Q ss_pred ----eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-H
Q 013550 157 ----IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-K 231 (441)
Q Consensus 157 ----i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~ 231 (441)
+.. +... ....+..|.|+|+....- .+.+....-++++|.++|++... |. .
T Consensus 74 ~~~~~~~----------------~~~~--~~~~~~~~~Gta~al~~a-----~~~i~~~~~~~~lv~~gD~v~~~-~~~~ 129 (200)
T cd02508 74 KNGGLFI----------------LPPQ--QRKGGDWYRGTADAIYQN-----LDYIERSDPEYVLILSGDHIYNM-DYRE 129 (200)
T ss_pred CCCCEEE----------------eCcc--cCCCCCcccCcHHHHHHH-----HHHHHhCCCCEEEEecCCEEEec-CHHH
Confidence 111 0000 001234688998844322 22232333478999999996544 33 5
Q ss_pred HHHHHHHcCCcceE
Q 013550 232 ILNHLIQNKNEYCM 245 (441)
Q Consensus 232 ~lg~~~~~~~~~~~ 245 (441)
++.++.++++++.+
T Consensus 130 ~l~~~~~~~~~~t~ 143 (200)
T cd02508 130 MLDFHIESGADITV 143 (200)
T ss_pred HHHHHHHcCCCEEE
Confidence 66666666665544
No 54
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=98.87 E-value=6.8e-08 Score=92.16 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=104.6
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
+|+||||.||||+. ..||+++|+ .|++++++.++.+...+ +. ++|.+. +..+...++++++ . .+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~-~g~~li~~~l~~l~~~g------i~~i~vv~~-~~~~~~~~~~~~~--~--~~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEI-NGKPLLERQIETLKEAG------IDDIVIVTG-YKKEQIEELLKKY--P--NI 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeE-CCEEHHHHHHHHHHHCC------CceEEEEec-cCHHHHHHHHhcc--C--Ce
Confidence 47999999999985 579999999 88999999999988753 44 455555 4677777777653 1 12
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLI 237 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~ 237 (441)
.+..| ..+.|.|.++.+.+. ++.+ -++++|.++|++. ++.++..+.
T Consensus 69 ~~~~~----------------------~~~~~~g~~~s~~~~-----~~~~----~~~~lv~~~D~~~---~~~~~~~~~ 114 (229)
T cd02523 69 KFVYN----------------------PDYAETNNIYSLYLA-----RDFL----DEDFLLLEGDVVF---DPSILERLL 114 (229)
T ss_pred EEEeC----------------------cchhhhCcHHHHHHH-----HHHc----CCCEEEEeCCEec---CHHHHHHHH
Confidence 22111 112356665522111 1222 3789999999964 556777788
Q ss_pred HcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 238 ~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
+.+.+.++-+.+... +......+. .++ -.+++..+-|... ......|++.+.|+-+.+.++.+
T Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~v~~~~~k~~~~-------~~~~~~~~Giy~~~~~~~~~l~~ 178 (229)
T cd02523 115 SSPADNAILVDKKTK-EWEDEYVKDLDDA-GVLLGIISKAKNL-------EEIQGEYVGISKFSPEDADRLAE 178 (229)
T ss_pred cCCCCCeEEEccCcc-cccccceeeecCc-cceEeecccCCCc-------chhceEEEeEEEECHHHHHHHHH
Confidence 888888776654222 222222222 221 1222222222110 11235799999999998777654
No 55
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.85 E-value=2.3e-07 Score=97.71 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||+...||+++|+ .|++++++.++++.... . -.+++.++ +..+.+.+++.+ .+.
T Consensus 2 ~~~avIlAaG~g~Rl~~~~pK~ll~i-~Gkpli~~~l~~l~~~g----i-~~iivvv~-~~~~~i~~~~~~------~~~ 68 (458)
T PRK14354 2 NRYAIILAAGKGTRMKSKLPKVLHKV-CGKPMVEHVVDSVKKAG----I-DKIVTVVG-HGAEEVKEVLGD------RSE 68 (458)
T ss_pred CceEEEEeCCCCcccCCCCChhhCEe-CCccHHHHHHHHHHhCC----C-CeEEEEeC-CCHHHHHHHhcC------CcE
Confidence 35689999999999998899999999 88999999999997642 2 13455555 445555555432 111
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
+. .+ ..+.|+++.+... ++.+ +..-+++++.+.|+ +....|. .++-++
T Consensus 69 ~~---------------~~---------~~~~g~~~al~~a-----~~~l-~~~~d~vlv~~~D~p~i~~~~l~~li~~~ 118 (458)
T PRK14354 69 FA---------------LQ---------EEQLGTGHAVMQA-----EEFL-ADKEGTTLVICGDTPLITAETLKNLIDFH 118 (458)
T ss_pred EE---------------Ec---------CCCCCHHHHHHHH-----HHHh-cccCCeEEEEECCccccCHHHHHHHHHHH
Confidence 10 11 1245665532111 1222 22236899999999 5443333 344444
Q ss_pred HHcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 237 IQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
.+.+++..+.+.....+.. .|.+.. .+|+ ++++.+-|+... ........|++.++|+.+.|.+.++
T Consensus 119 ~~~~~~~t~~~~~~~~~~~-~g~v~~d~~~~--V~~~~ek~~~~~----~~~~~~~~~~Giy~f~~~~l~~~l~ 185 (458)
T PRK14354 119 EEHKAAATILTAIAENPTG-YGRIIRNENGE--VEKIVEQKDATE----EEKQIKEINTGTYCFDNKALFEALK 185 (458)
T ss_pred HhcCCceEEEEEEcCCCCC-ceEEEEcCCCC--EEEEEECCCCCh----HHhcCcEEEEEEEEEEHHHHHHHHH
Confidence 4556666544433333333 455433 3444 333332221100 0112346799999999987776664
No 56
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.85 E-value=1.4e-07 Score=99.13 Aligned_cols=183 Identities=18% Similarity=0.187 Sum_probs=109.4
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
.++.+|+||||.||||+...||.++|+ .|+|++++.++.+.... + -..+|.++. .++.+.+++.++. .++
T Consensus 4 ~~~~aiILAaG~gsR~~~~~pK~ll~v-~gkpli~~~l~~l~~~g----i-~~ivvv~~~-~~~~i~~~~~~~~---~~~ 73 (446)
T PRK14353 4 RTCLAIILAAGEGTRMKSSLPKVLHPV-AGRPMLAHVLAAAASLG----P-SRVAVVVGP-GAEAVAAAAAKIA---PDA 73 (446)
T ss_pred ccceEEEEcCCCCCccCCCCCcccCEE-CCchHHHHHHHHHHhCC----C-CcEEEEECC-CHHHHHHHhhccC---CCc
Confidence 367889999999999998889999999 88999999999998753 1 245555554 5666777765431 112
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccHHHHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHL 236 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~ 236 (441)
.++.| ..|.|.++...+- ++.+ ..+.++++|.+.|. +.. +..+..+
T Consensus 74 ~~~~~------------------------~~~~G~~~sl~~a-----~~~l-~~~~~~~lv~~~D~P~i~---~~~l~~l 120 (446)
T PRK14353 74 EIFVQ------------------------KERLGTAHAVLAA-----REAL-AGGYGDVLVLYGDTPLIT---AETLARL 120 (446)
T ss_pred eEEEc------------------------CCCCCcHHHHHHH-----HHHH-hccCCCEEEEeCCcccCC---HHHHHHH
Confidence 22111 1244665522111 2222 22457889999999 543 3333222
Q ss_pred ---HHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 237 ---IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 237 ---~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
.+.+++.++.+.+..++. +.|.+...+|+ +.++.|=|+....+ ..-.+.|++.++|+.+.+.+.+++
T Consensus 121 ~~~~~~~~~~~i~~~~~~~~~-~~g~~~~~~g~--v~~~~ek~~~~~~~----~~~~~~~~Giy~~~~~~l~~~l~~ 190 (446)
T PRK14353 121 RERLADGADVVVLGFRAADPT-GYGRLIVKGGR--LVAIVEEKDASDEE----RAITLCNSGVMAADGADALALLDR 190 (446)
T ss_pred HHhHhcCCcEEEEEEEeCCCC-cceEEEECCCe--EEEEEECCCCChHH----hhceEEEEEEEEEEHHHHHHHHHh
Confidence 345667766665554443 44555444554 45555433221111 011356999999998877666653
No 57
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.83 E-value=1e-07 Score=91.78 Aligned_cols=184 Identities=11% Similarity=0.110 Sum_probs=111.1
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++++|+||||.++||+ +|.++++ .|+|++++.++++...+ +.-+++.+. ++.+.+++.++. .++.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i-~Gkpll~~~l~~l~~~~------i~~ivvv~~--~~~i~~~~~~~~---~~v~ 66 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADI-GGKPMIVRVYERASKAG------ADRVVVATD--DERIADAVEAFG---GEVV 66 (245)
T ss_pred ceEEEEecCCCCCCCC---CCccccc-CCcCHHHHHHHHHHhcC------CCeEEEECC--cHHHHHHHHHcC---CEEE
Confidence 5788999999999995 7999999 89999999999998753 454555543 477777776532 2322
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
+ .. ...+.|.+++..++ ..+...+-+++++.++|+ +...-+. .++..+
T Consensus 67 ~----------------~~--------~~~~~gt~~~~~~~------~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~ 116 (245)
T PRK05450 67 M----------------TS--------PDHPSGTDRIAEAA------AKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPL 116 (245)
T ss_pred E----------------CC--------CcCCCchHHHHHHH------HhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHH
Confidence 1 00 12355666644332 222112357899999999 6533232 344444
Q ss_pred HHcCCcceEEEeeecc-----CCccceEEEEeCCeeEEEEeecCCh-hhhhhhcc-CCCcceEEEeeeeeeHHHHHHHHH
Q 013550 237 IQNKNEYCMEVTPKTL-----ADVKGGTLISYEGKVQLLEIAQVPD-EHVNEFKS-IEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~-----~dekgGvl~~~~g~~~lvEysq~~~-~~~~~~~~-~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
..++.++..-+++..+ ..+.+|+....+|+ ++++.+-|. ++.+...+ ...-...|++.+.|+.+.++.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~--v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 117 ANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGR--ALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred hcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCc--EEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHh
Confidence 4455677666655522 22336666444555 345554431 11111100 012245699999999999988775
No 58
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=98.80 E-value=1.5e-07 Score=92.14 Aligned_cols=197 Identities=12% Similarity=0.101 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 81 avv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
-+|+||||.||||+. ..||+++|+ .|++++++.++.+.+.+ +.-+++...+..+.+.++|.....+..+.
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv-~gkpli~~~l~~l~~~g------i~~i~iv~~~~~~~i~~~~~~~~~~~~~~ 74 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPI-VDKPVIQYIVEEAVAAG------IEDIIIVTGRGKRAIEDHFDRSYELEETL 74 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEE-CCEEHHHHHHHHHHHCC------CCEEEEEeCCchHHHHHHhCCcHHHHHHH
Confidence 468999999999984 789999999 88999999999998753 43344444456677888885321100000
Q ss_pred EEEeecc----ceeee--cCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCccccccc--
Q 013550 158 HTFNQSQ----YPRLC--ADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD-- 229 (441)
Q Consensus 158 ~~f~Q~~----~P~~~--~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~D-- 229 (441)
.+.. +|-+. ..+. .+. ...+..|.|+|+...... + .+ +.+.++|.++|++....|
T Consensus 75 ---~~~~~~~~~~~~~~~~~~~-~i~-----~~~~~~~~Gt~~al~~~~-----~-~i--~~~~~lv~~gD~~~~~~~~~ 137 (267)
T cd02541 75 ---EKKGKTDLLEEVRIISDLA-NIH-----YVRQKEPLGLGHAVLCAK-----P-FI--GDEPFAVLLGDDLIDSKEPC 137 (267)
T ss_pred ---HhcccHHHhhhhhcccCCc-eEE-----EEEcCCCCChHHHHHHHH-----H-Hh--CCCceEEEECCeEEeCCchH
Confidence 0000 00000 0000 000 122345789987442221 1 12 226688899999654433
Q ss_pred H-HHHHHHHHcCCcceEEEeeec-cCCccceEEEEeC--C-eeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHH
Q 013550 230 L-KILNHLIQNKNEYCMEVTPKT-LADVKGGTLISYE--G-KVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAI 304 (441)
Q Consensus 230 p-~~lg~~~~~~~~~~~~vv~k~-~~dekgGvl~~~~--g-~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l 304 (441)
. .++.++.+++++. +-+.... ......|++...+ | ...+.++.+=|.... ..-...|++.++|+-+.+
T Consensus 138 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~------~~~~~~~~Giyi~~~~~~ 210 (267)
T cd02541 138 LKQLIEAYEKTGASV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEE------APSNLAIVGRYVLTPDIF 210 (267)
T ss_pred HHHHHHHHHHhCCCE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCC------CCCceEEEEEEEcCHHHH
Confidence 2 5566666556653 2222211 1123346654432 2 234555554333110 112356899999999877
Q ss_pred HHHH
Q 013550 305 KRLV 308 (441)
Q Consensus 305 ~~~~ 308 (441)
..+.
T Consensus 211 ~~l~ 214 (267)
T cd02541 211 DILE 214 (267)
T ss_pred HHHH
Confidence 6653
No 59
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=98.73 E-value=6.7e-07 Score=90.05 Aligned_cols=198 Identities=13% Similarity=0.121 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCC--
Q 013550 80 LVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSN-- 154 (441)
Q Consensus 80 vavv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~-- 154 (441)
+.+|+||||.||||+. ..||+++|+ .|++++++.++.+.+.+ +--++....+..+.+.++|.....+.
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv-~g~pii~~~l~~l~~~g------i~~i~vv~~~~~~~i~~~~~~~~~~~~~ 81 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPL-VDKPLIQYVVNECIAAG------ITEIVLVTHSSKNSIENHFDTSFELEAM 81 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEE-CCEEHHHHHHHHHHHCC------CCEEEEEeCCCHHHHHHHHccchhhhhh
Confidence 4478999999999975 789999999 88999999999998753 55455555566888999996421111
Q ss_pred ----CceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccc----
Q 013550 155 ----VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGA---- 226 (441)
Q Consensus 155 ----~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~---- 226 (441)
.+..+ .|+-.... ..+.. . .......|.|+|+.+.. .....+-+.++|.|.|++..
T Consensus 82 l~~~~~~~~-~~e~~~i~-~~~~~-i-----~~~~q~~~~Gtg~Av~~--------a~~~~~~~~~lVl~gD~~~~~~~~ 145 (302)
T PRK13389 82 LEKRVKRQL-LDEVQSIC-PPHVT-I-----MQVRQGLAKGLGHAVLC--------AHPVVGDEPVAVILPDVILDEYES 145 (302)
T ss_pred hhhhhhhHH-HHhhhhcc-ccCce-E-----EEeecCCCCChHHHHHH--------HHHHcCCCCEEEEeCcceeccccc
Confidence 01000 00000000 00000 0 01122467899884422 21112335688999999642
Q ss_pred ---cccH-HHHHHHHHcCCcceEEEeeeccCCccceEEEEeC-----C-eeEEEEeecCChhhhhhhccCCCcceEEEee
Q 013550 227 ---IVDL-KILNHLIQNKNEYCMEVTPKTLADVKGGTLISYE-----G-KVQLLEIAQVPDEHVNEFKSIEKFKIFNTNN 296 (441)
Q Consensus 227 ---~~Dp-~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~~-----g-~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn 296 (441)
..|. .++.++.+++++ ++-+.+...+ ..-|++...+ | .-+++++-|=|.... ..-...|++.
T Consensus 146 ~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~~-~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~------~~s~~~~~Gi 217 (302)
T PRK13389 146 DLSQDNLAEMIRRFDETGHS-QIMVEPVADV-TAYGVVDCKGVELAPGESVPMVGVVEKPKADV------APSNLAIVGR 217 (302)
T ss_pred ccccccHHHHHHHHHhcCCC-EEEEEEcccC-CcceEEEecCcccccCCcceEEEEEECCCCCC------CCccEEEEEE
Confidence 2343 567777777776 3444443333 4457775432 1 123445544443211 0114689999
Q ss_pred eeeeHHHHHHHHH
Q 013550 297 LWVNLKAIKRLVE 309 (441)
Q Consensus 297 ~~~~l~~l~~~~~ 309 (441)
+.|+-+.+ +.++
T Consensus 218 Yi~~~~il-~~l~ 229 (302)
T PRK13389 218 YVLSADIW-PLLA 229 (302)
T ss_pred EEECHHHH-HHHH
Confidence 99998876 4443
No 60
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=98.68 E-value=1.3e-06 Score=83.82 Aligned_cols=182 Identities=10% Similarity=0.105 Sum_probs=107.7
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+++||||.|+||+ ||.++++ .|+|+++++++++.+.. .+.-++..+. ++.+.+++.++. ..+.
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i-~gkpll~~~l~~l~~~~-----~i~~ivvv~~--~~~i~~~~~~~~---~~~~ 66 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADI-AGKPMIQHVYERAKKAK-----GLDEVVVATD--DERIADAVESFG---GKVV 66 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCccc-CCcCHHHHHHHHHHhCC-----CCCEEEEECC--cHHHHHHHHHcC---CEEE
Confidence 4678999999999996 7999999 89999999999998751 2455555543 477888876532 2221
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
+ + ....+.|.|++..++. .+ ....+++++.++|+ +...-+. .++..+
T Consensus 67 ~--~----------------------~~~~~~gt~~~~~~~~------~~-~~~~d~vlv~~gD~Pli~~~~l~~l~~~~ 115 (239)
T cd02517 67 M--T----------------------SPDHPSGTDRIAEVAE------KL-DADDDIVVNVQGDEPLIPPEMIDQVVAAL 115 (239)
T ss_pred E--c----------------------CcccCchhHHHHHHHH------hc-CCCCCEEEEecCCCCCCCHHHHHHHHHHH
Confidence 1 0 0123567776554432 22 11247899999999 6544332 233333
Q ss_pred HHc-CCcceEEEeeeccCC---cc--ceEEEEeCCeeEEEEeecCCh-hhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 237 IQN-KNEYCMEVTPKTLAD---VK--GGTLISYEGKVQLLEIAQVPD-EHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 237 ~~~-~~~~~~~vv~k~~~d---ek--gGvl~~~~g~~~lvEysq~~~-~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
... ++++++-+++..++. +. .|+....+|+ +.++.+-+. +.... . ...-...|++.+.|+.+.++.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--v~~~~~~~~~~~~~~-~-~~~~~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 116 KDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGY--ALYFSRSPIPYPRDS-S-EDFPYYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred HhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCC--EEEecCCCCCCCCCC-C-CCCceeEEEEEEEECHHHHHHHHh
Confidence 333 566655555543333 22 2344334554 445543221 10000 0 011236799999999999988764
No 61
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=1.3e-06 Score=85.80 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=116.8
Q ss_pred EEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 82 vv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
-|+||||.||||. ...||.++|| -+|+.+++-++++...+ |. +.|.++..+....++++.+-..+..++
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV-~~KPmi~y~l~~L~~aG------I~dI~II~~~~~~~~~~~llGdgs~~gv~i 75 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPV-YDKPMIYYPLETLMLAG------IRDILIVVGPEDKPTFKELLGDGSDFGVDI 75 (286)
T ss_pred cEEecCcCccccccccccCCccccee-cCcchhHhHHHHHHHcC------CceEEEEecCCchhhhhhhhcCccccCcce
Confidence 4799999999997 5899999999 89999999999999876 54 566666666666677766655567888
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLI 237 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~ 237 (441)
.+-.|. .|.|=++.+. +-+++. |-+-+.++-+||+..---..++..+.
T Consensus 76 tY~~Q~------------------------~p~GlA~Av~------~a~~fv--~~~~f~l~LGDNi~~~~l~~~~~~~~ 123 (286)
T COG1209 76 TYAVQP------------------------EPDGLAHAVL------IAEDFV--GDDDFVLYLGDNIFQDGLSELLEHFA 123 (286)
T ss_pred EEEecC------------------------CCCcHHHHHH------HHHhhc--CCCceEEEecCceeccChHHHHHHHh
Confidence 876664 5778777552 344443 66778999999943322235565555
Q ss_pred HcCCcceEEEeeeccCCccceEEEE-eCCe-eEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHH
Q 013550 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK 305 (441)
Q Consensus 238 ~~~~~~~~~vv~k~~~dekgGvl~~-~~g~-~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~ 305 (441)
+.+.+...-+.+..+|.+ .||+.. .+|+ ..++|=.+.|+. .+.=|+.++|+-+..+
T Consensus 124 ~~~~ga~i~~~~V~dP~r-fGV~e~d~~~~v~~l~EKP~~P~S-----------NlAvtGlY~~d~~Vf~ 181 (286)
T COG1209 124 EEGSGATILLYEVDDPSR-YGVVEFDEDGKVIGLEEKPKEPKS-----------NLAVTGLYFYDPSVFE 181 (286)
T ss_pred ccCCCcEEEEEEcCCccc-ceEEEEcCCCcEEEeEECCCCCCC-----------ceeEEEEEEeChHHHH
Confidence 545555555555557766 455444 4564 334554444443 3566788888865544
No 62
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.60 E-value=1.1e-06 Score=93.61 Aligned_cols=193 Identities=11% Similarity=0.089 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCcCC----CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCc
Q 013550 81 VVLKLNGGLGTTMG----CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (441)
Q Consensus 81 avv~LaGGlGTRLG----~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~ 156 (441)
-.|+||||.||||+ .+.||.++++..++|+|+..++++..+. +. ..+|.|+..-.+...+.++++.....+
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~----~~-~iviv~~~~~~~~~~~~l~~~~~~~~~ 76 (468)
T TIGR01479 2 IPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLP----CS-SPLVICNEEHRFIVAEQLREIGKLASN 76 (468)
T ss_pred EEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCC----Cc-CcEEecCHHHHHHHHHHHHHcCCCcce
Confidence 36899999999998 3579999999666999999999988753 21 344555543333445555543210011
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHH--CCCcEEEEEcCCccccc-ccH-HH
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS--QGKEYVFAANSDNLGAI-VDL-KI 232 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~--~G~eyi~v~nvDNL~~~-~Dp-~~ 232 (441)
...+-.|.|+|+.-.. .. ..+.+ .+-.+++|.++|++... .+. .+
T Consensus 77 --------------------------~i~Ep~~~gTa~ai~~-aa----~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~ 125 (468)
T TIGR01479 77 --------------------------IILEPVGRNTAPAIAL-AA----LLAARRNGEDPLLLVLAADHVITDEDAFQAA 125 (468)
T ss_pred --------------------------EEecccccCchHHHHH-HH----HHHHHHHCCCcEEEEecCceeecCHHHHHHH
Confidence 1223356778764321 10 11212 23457999999995432 111 23
Q ss_pred HHHH---HHcCCcceEEEeeeccCCccceEEEEeC-----CeeEEEEeecCChhh-hhhhccCCCcceEEEeeeeeeHHH
Q 013550 233 LNHL---IQNKNEYCMEVTPKTLADVKGGTLISYE-----GKVQLLEIAQVPDEH-VNEFKSIEKFKIFNTNNLWVNLKA 303 (441)
Q Consensus 233 lg~~---~~~~~~~~~~vv~k~~~dekgGvl~~~~-----g~~~lvEysq~~~~~-~~~~~~~~~~~~fNtnn~~~~l~~ 303 (441)
+..+ .++++.+.+-+ ..+.+...-|.+...+ +...+..+-|=|+.. ...+-....| +.|++.+.|+.+.
T Consensus 126 l~~~~~~a~~~~lvtlgi-~p~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~-~wNsGif~~~~~~ 203 (468)
T TIGR01479 126 VKLAMPAAAEGKLVTFGI-VPTHPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDY-YWNSGMFLFRASR 203 (468)
T ss_pred HHHHHHHHhcCCEEEEEe-cCCCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCe-EEEeeEEEEEHHH
Confidence 3322 23344333333 4455555667776431 223454444444322 2222111223 6799999999999
Q ss_pred HHHHHHhc
Q 013550 304 IKRLVEAD 311 (441)
Q Consensus 304 l~~~~~~~ 311 (441)
|.+.+++.
T Consensus 204 ll~~l~~~ 211 (468)
T TIGR01479 204 YLAELKKH 211 (468)
T ss_pred HHHHHHHH
Confidence 88888764
No 63
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.60 E-value=4.7e-07 Score=86.34 Aligned_cols=173 Identities=14% Similarity=0.117 Sum_probs=93.8
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCC--ChhHHHHHHHHhCCCCCc
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFN--THDDTSKIIEKYSKSNVE 156 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~--T~e~T~~~l~~~~~~~~~ 156 (441)
+|+||||.||||+. +.||+|+|+ .|+++++++++.+... |+. ..++.+... ..+...+.++.+. .+.+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i-~g~pli~~~l~~l~~~----g~~-~ivvv~~~~~~~~~~~~~~~~~~~-~~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEV-DGKPMIEWVIESLAKI----FDS-RFIFICRDEHNTKFHLDESLKLLA-PNAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEE-CCEEHHHHHHHhhhcc----CCc-eEEEEEChHHhhhhhHHHHHHHhC-CCCE
Confidence 58999999999964 789999999 8899999999988764 322 233334211 1122233333221 1222
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC-CCcEEEEEcCCcccccccH-HHHH
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVFAANSDNLGAIVDL-KILN 234 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~-G~eyi~v~nvDNL~~~~Dp-~~lg 234 (441)
+.+ . ...+.|+++.. ...+..- +.++++|.+.|.+... |. .++-
T Consensus 74 i~~-~------------------------~~~~~g~~~~l--------~~a~~~l~~~~~~lv~~~D~i~~~-~~~~~~~ 119 (231)
T cd04183 74 VVE-L------------------------DGETLGAACTV--------LLAADLIDNDDPLLIFNCDQIVES-DLLAFLA 119 (231)
T ss_pred EEE-e------------------------CCCCCcHHHHH--------HHHHhhcCCCCCEEEEecceeecc-CHHHHHH
Confidence 211 1 11366776633 2222221 3478899999996543 33 3333
Q ss_pred HHHHcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHH-HHHHHHH
Q 013550 235 HLIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK-AIKRLVE 309 (441)
Q Consensus 235 ~~~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~-~l~~~~~ 309 (441)
.+.+.+.+.++-++.+ .. ...|.+.. .+|+. .++.+-+. .-.+.|++.++|+-+ .+.+.++
T Consensus 120 ~~~~~~~~~~i~~~~~-~~-~~~~~v~~d~~~~v--~~~~ek~~----------~~~~~~~Giy~~~~~~~~~~~l~ 182 (231)
T cd04183 120 AFRERDLDGGVLTFFS-SH-PRWSYVKLDENGRV--IETAEKEP----------ISDLATAGLYYFKSGSLFVEAAK 182 (231)
T ss_pred HhhccCCceEEEEEeC-CC-CCeEEEEECCCCCE--EEeEEcCC----------CCCccEeEEEEECcHHHHHHHHH
Confidence 3444455554444443 33 33455443 34543 22221110 012479999999977 4445443
No 64
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.57 E-value=1.2e-06 Score=83.40 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=88.1
Q ss_pred EEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCc-CEEEeeCCCChhHHHHHHHHhCC-CC-
Q 013550 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTHDDTSKIIEKYSK-SN- 154 (441)
Q Consensus 81 avv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~i-Pl~IMtS~~T~e~T~~~l~~~~~-~~- 154 (441)
-+|+||||.||||+ .+.||+++|+ .|++++++.++.+.+.+ + .++|.++..-.+.++++++++.. ..
T Consensus 2 ~aVILAgG~g~R~~plt~~~pK~Llpv-~g~pli~~~l~~l~~~g------~~~iivv~~~~~~~~i~~~l~~~~~~~~~ 74 (214)
T cd04198 2 QAVILAGGGGSRLYPLTDNIPKALLPV-ANKPMIWYPLDWLEKAG------FEDVIVVVPEEEQAEISTYLRSFPLNLKQ 74 (214)
T ss_pred EEEEEeCCCCCcCCccccCCCcccCEE-CCeeHHHHHHHHHHHCC------CCeEEEEECHHHHHHHHHHHHhcccccCc
Confidence 35789999999998 4789999999 89999999999998743 3 45566655444668888876531 11
Q ss_pred -CceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHH
Q 013550 155 -VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKIL 233 (441)
Q Consensus 155 -~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~l 233 (441)
..+.+ .....+.|+|+..+..... -.+.++|.+.|.+....--.++
T Consensus 75 ~~~~~~------------------------~~~~~~~gt~~al~~~~~~---------i~~d~lv~~~D~i~~~~l~~~l 121 (214)
T cd04198 75 KLDEVT------------------------IVLDEDMGTADSLRHIRKK---------IKKDFLVLSCDLITDLPLIELV 121 (214)
T ss_pred ceeEEE------------------------ecCCCCcChHHHHHHHHhh---------cCCCEEEEeCccccccCHHHHH
Confidence 11110 1123578999866554432 1356889999986554223666
Q ss_pred HHHHHcCCcceEEEeeec
Q 013550 234 NHLIQNKNEYCMEVTPKT 251 (441)
Q Consensus 234 g~~~~~~~~~~~~vv~k~ 251 (441)
..+..+++.+.+-+.+..
T Consensus 122 ~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 122 DLHRSHDASLTVLLYPPP 139 (214)
T ss_pred HHHhccCCcEEEEEeccC
Confidence 777777888877665543
No 65
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=2.9e-06 Score=87.23 Aligned_cols=197 Identities=17% Similarity=0.337 Sum_probs=131.0
Q ss_pred CCeEEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHH-hCCC
Q 013550 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK-YSKS 153 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~-~~~~ 153 (441)
.++-.++||||.|+||+- ..||+.+|.....-+.|+.+-....-+ . -.+.+.|-+..| ....+|.. ..+.
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSG----i-~~I~VltQy~~~-SL~~Hi~~G~~w~ 77 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSG----I-RRIGVLTQYKSH-SLNDHIGRGWPWD 77 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccC----C-CeEEEEeccchh-HHHHHhhCCCccc
Confidence 577889999999999984 789999999555556677665554322 1 357788888888 56666665 4441
Q ss_pred ----CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCccccccc
Q 013550 154 ----NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD 229 (441)
Q Consensus 154 ----~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~D 229 (441)
...++++.+.+ ++ ..--|+ -|+.| |.+++ +.-+.+-+.+|+.|+++|-+.+. |
T Consensus 78 l~~~~~~v~ilp~~~-------------~~---~~~~wy-~Gtad---ai~Qn--l~~i~~~~~eyvlIlsgDhIYkm-D 134 (393)
T COG0448 78 LDRKNGGVFILPAQQ-------------RE---GGERWY-EGTAD---AIYQN--LLIIRRSDPEYVLILSGDHIYKM-D 134 (393)
T ss_pred cccccCcEEEeCchh-------------cc---CCCcce-eccHH---HHHHh--HHHHHhcCCCEEEEecCCEEEec-C
Confidence 22344322111 00 111233 24444 23332 44455778999999999999987 6
Q ss_pred H-HHHHHHHHcCCcceEEEe--eeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHH
Q 013550 230 L-KILNHLIQNKNEYCMEVT--PKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 230 p-~~lg~~~~~~~~~~~~vv--~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~ 306 (441)
. .+|-+|.++++++.+.|. ++..+.+-| +...|..-+++|+.|=|.+. .....+...+++.|+.+.|.+
T Consensus 135 y~~ml~~H~~~gadiTv~~~~Vp~~eas~fG--im~~D~~~~i~~F~eKp~~~------~~~~~laSMgiYIf~~~~L~~ 206 (393)
T COG0448 135 YSDMLDFHIESGADVTVAVKEVPREEASRFG--VMNVDENGRIIEFVEKPADG------PPSNSLASMGIYIFNTDLLKE 206 (393)
T ss_pred HHHHHHHHHHcCCCEEEEEEECChHhhhhcC--ceEECCCCCEEeeeeccCcC------CcccceeeeeeEEEcHHHHHH
Confidence 6 889999999999988664 444555545 34444445588888877761 122346789999999999999
Q ss_pred HHHhc
Q 013550 307 LVEAD 311 (441)
Q Consensus 307 ~~~~~ 311 (441)
+|++.
T Consensus 207 ~L~~~ 211 (393)
T COG0448 207 LLEED 211 (393)
T ss_pred HHHHH
Confidence 99864
No 66
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.40 E-value=2.1e-05 Score=75.38 Aligned_cols=177 Identities=8% Similarity=0.126 Sum_probs=101.7
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++++|+||||.++||+ +|.++++ .|+|++++.++++.+.. .+.-+++++. ++.+.++++++. .++.
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i-~GkPli~~~i~~l~~~~-----~~~~ivv~t~--~~~i~~~~~~~~---~~v~ 67 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDI-LGKPMIQHVYERAAQAA-----GVEEVYVATD--DQRIEDAVEAFG---GKVV 67 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCcc-CCcCHHHHHHHHHHhcC-----CCCeEEEECC--hHHHHHHHHHcC---CeEE
Confidence 5788999999999995 5999999 89999999999998751 1444444443 477888887542 2222
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
. . ....+.|.+++..++ ...+.+++++.++|+ +....+. .++..+
T Consensus 68 ~-----------------~-------~~~~~~g~~~~~~a~---------~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~ 114 (238)
T PRK13368 68 M-----------------T-------SDDHLSGTDRLAEVM---------LKIEADIYINVQGDEPMIRPRDIDTLIQPM 114 (238)
T ss_pred e-----------------c-------CccCCCccHHHHHHH---------HhCCCCEEEEEcCCcCcCCHHHHHHHHHHH
Confidence 1 0 012345665533322 222568999999999 6543333 344444
Q ss_pred HHcCC-cceEEEeeecc------CCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 237 IQNKN-EYCMEVTPKTL------ADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 237 ~~~~~-~~~~~vv~k~~------~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
...+. .+.+-+.++.. +.. .|+....+|+. ..+.+-|... ..++.....+.|++.+.|+.+.+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~g~v--~~~~~~~~~~--~~~~~~~~~~~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 115 LDDPSINVATLCAPISTEEEFESPNV-VKVVVDKNGDA--LYFSRSPIPS--RRDGESARYLKHVGIYAFRRDVLQQF 187 (238)
T ss_pred HHCCCccceeEEEEcCCHHHhcCcCC-CEEEECCCCCE--EEeeCCCCCC--CCCCCCCceeEEEEEEEeCHHHHHHH
Confidence 44443 33333333221 222 23433345653 2333211100 00111112257999999999999874
No 67
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=98.37 E-value=2.2e-06 Score=77.04 Aligned_cols=94 Identities=19% Similarity=0.385 Sum_probs=64.9
Q ss_pred EEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCc-CEEEeeCCCChhHHHHHHHHhCCCCCceEEE
Q 013550 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTHDDTSKIIEKYSKSNVEIHTF 160 (441)
Q Consensus 82 vv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~i-Pl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f 160 (441)
+|+||||.|+|||. ||.++++ .|+|+++.+++++...+ + +++|.+.. +++.+++..+. ..+.
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i-~g~~li~~~l~~l~~~~------~~~Ivvv~~~---~~~~~~~~~~~---~~~v-- 63 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPI-GGKPLIERVLEALREAG------VDDIVVVTGE---EEIYEYLERYG---IKVV-- 63 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEE-TTEEHHHHHHHHHHHHT------ESEEEEEEST---HHHHHHHTTTT---SEEE--
T ss_pred CEEECCcCcccCCC--CccceeE-CCccHHHHHHHHhhccC------CceEEEecCh---HHHHHHHhccC---ceEE--
Confidence 58999999999985 9999999 99999999999999874 3 56666665 44555554331 2211
Q ss_pred eeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC-CCcEEEEEcCCc
Q 013550 161 NQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVFAANSDN 223 (441)
Q Consensus 161 ~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~-G~eyi~v~nvDN 223 (441)
. -.+.+. |... |+...+... +.++++|..+|-
T Consensus 64 ----------------~---------~~~~~~-G~~~-----sl~~a~~~~~~~~~vlv~~~D~ 96 (160)
T PF12804_consen 64 ----------------V---------DPEPGQ-GPLA-----SLLAALSQLPSSEPVLVLPCDQ 96 (160)
T ss_dssp ----------------E----------STSSC-SHHH-----HHHHHHHTSTTSSEEEEEETTE
T ss_pred ----------------E---------eccccC-ChHH-----HHHHHHHhcccCCCcEEEeCCc
Confidence 0 011232 2222 555556555 789999999999
No 68
>PLN02917 CMP-KDO synthetase
Probab=98.31 E-value=2.7e-05 Score=78.17 Aligned_cols=181 Identities=10% Similarity=0.063 Sum_probs=106.7
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
.++.+|++|+|.++||+ +|.++++ .|+|++++.+++++... .+..++... .++++.+++.++. .++
T Consensus 46 ~~i~aIIpA~G~SsR~~---~K~L~~i-~GkPLL~~vi~~a~~~~-----~~~~VVV~~--~~e~I~~~~~~~~---v~v 111 (293)
T PLN02917 46 SRVVGIIPARFASSRFE---GKPLVHI-LGKPMIQRTWERAKLAT-----TLDHIVVAT--DDERIAECCRGFG---ADV 111 (293)
T ss_pred CcEEEEEecCCCCCCCC---CCCeeeE-CCEEHHHHHHHHHHcCC-----CCCEEEEEC--ChHHHHHHHHHcC---CEE
Confidence 47889999999999996 6999999 79999999999998643 134444442 3567788776542 222
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNH 235 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~ 235 (441)
. .|. .+.+.|.|.+..++ +.+ +...+++++.++|. |...-+. .++..
T Consensus 112 i--~~~----------------------~~~~~GT~~~~~a~------~~l-~~~~d~Vlil~gD~PlI~~~tI~~li~~ 160 (293)
T PLN02917 112 I--MTS----------------------ESCRNGTERCNEAL------KKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKA 160 (293)
T ss_pred E--eCC----------------------cccCCchHHHHHHH------Hhc-cCCCCEEEEecCCcCCCCHHHHHHHHHH
Confidence 1 110 12466777765443 222 23467999999999 6543222 23333
Q ss_pred HHHcCCcceE--EEe--eeccCCccceEEEEe--CCeeEEEEee-c-CChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 236 LIQNKNEYCM--EVT--PKTLADVKGGTLISY--EGKVQLLEIA-Q-VPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 236 ~~~~~~~~~~--~vv--~k~~~dekgGvl~~~--~g~~~lvEys-q-~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
+. .+.++.+ .+. ...++..++-+.|.. +|+ .+.++ . +|.+ .+.-.....-..-|++.+.|+.++|...
T Consensus 161 ~~-~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~--alyfsr~~Ipe~-kd~~~~~~~i~~~n~Giy~f~~~~L~~l 236 (293)
T PLN02917 161 LQ-AAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGY--AIYFSRGLIPYN-KSGKVNPQFPYLLHLGIQSYDAKFLKIY 236 (293)
T ss_pred HH-hcCCceEEEEeeecCHHHhcCCCceEEEECCCCe--EEEeecCcCCcC-CCcccccccceEEEEEEEEeCHHHHHHH
Confidence 32 3333333 211 223455556565433 453 33444 2 3322 1110112233566999999999999943
No 69
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.23 E-value=1.8e-05 Score=75.46 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=91.7
Q ss_pred EEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhCCC----
Q 013550 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKS---- 153 (441)
Q Consensus 82 vv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~~~---- 153 (441)
+|+||||.|+||+. ..||+++|+ .|++++++.++.+...+ +. .+|++... .+.+.+++.+..+.
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv-~g~pli~~~l~~l~~~g------i~~i~vv~~~~-~~~~~~~~~~~~~~~~~~ 74 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPV-ANVPLIDYTLEWLEKAG------VEEVFVVCCEH-SQAIIEHLLKSKWSSLSS 74 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceE-CCEEHHHHHHHHHHHCC------CCeEEEEeCCc-HHHHHHHHHhcccccccC
Confidence 57799999999974 789999999 89999999999888743 44 55666644 55666677653321
Q ss_pred CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HH
Q 013550 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KI 232 (441)
Q Consensus 154 ~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~ 232 (441)
...+.. .. .....+.|+++... .....+ .+.+.|.++|.+... |+ .+
T Consensus 75 ~~~v~~----------------~~------~~~~~~~Gta~~l~--~~~~~i-------~~dflv~~gD~i~~~-~l~~~ 122 (216)
T cd02507 75 KMIVDV----------------IT------SDLCESAGDALRLR--DIRGLI-------RSDFLLLSCDLVSNI-PLSEL 122 (216)
T ss_pred CceEEE----------------EE------ccCCCCCccHHHHH--HHhhcC-------CCCEEEEeCCEeecC-CHHHH
Confidence 111110 00 01124667777332 111111 356889999997654 44 44
Q ss_pred HHH--HHHcCCcceEEEeeeccCC--------ccceEEEEe--CCeeEEEEeecCChh
Q 013550 233 LNH--LIQNKNEYCMEVTPKTLAD--------VKGGTLISY--EGKVQLLEIAQVPDE 278 (441)
Q Consensus 233 lg~--~~~~~~~~~~~vv~k~~~d--------ekgGvl~~~--~g~~~lvEysq~~~~ 278 (441)
+-. ....+.++.+.+....... ..-++++.. .++..+++|.+-+++
T Consensus 123 l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 180 (216)
T cd02507 123 LEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE 180 (216)
T ss_pred HHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCc
Confidence 432 3334555554443322211 123444442 345788888876654
No 70
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=98.23 E-value=1.1e-05 Score=75.45 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=48.3
Q ss_pred EEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHH
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEK 149 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~ 149 (441)
..|+||||.|||||. .||+++++ .|+|++++.++.+.... +. +++.+|. .++.++.++++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i-~GkplI~~vi~~l~~~~------i~~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEV-CGRCLIDHVLSPLLKSK------VNNIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEE-CCEEHHHHHHHHHHhCC------CCEEEEEeCC-CHHHHHHHHhh
Confidence 568999999999986 79999999 89999999999998643 33 4555554 56678888765
No 71
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=6.7e-05 Score=72.51 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCC
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK 152 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~ 152 (441)
+..|+||.|.|||||.+.||++++| .|+++++.++++|.... .--+++.|+.+..+...+|+.+|+.
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev-~gr~ii~~~i~~L~~~g-----i~e~vvV~~g~~~~lve~~l~~~~~ 70 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEV-GGREIIYRTIENLAKAG-----ITEFVVVTNGYRADLVEEFLKKYPF 70 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhc-CCeEeHHHHHHHHHHcC-----CceEEEEeccchHHHHHHHHhcCCc
Confidence 3578999999999999999999999 79999999999998864 1357999999999999999999874
No 72
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=98.12 E-value=0.00014 Score=68.63 Aligned_cols=185 Identities=11% Similarity=0.123 Sum_probs=102.0
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++++|+||||.|+||+ .|.++++ .|+|++++.++++.... .+.-++.++ .++++.++++++.. .+.
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l-~Gkpll~~~l~~l~~~~-----~~~~IvV~~--~~~~i~~~~~~~~~---~~~ 66 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL-GGKPLIAWTIEAALESK-----LFDRVVVST--DDEEIAEVARKYGA---EVP 66 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh-CCccHHHHHHHHHHhCC-----CCCEEEEEC--CcHHHHHHHHHhCC---Cce
Confidence 5789999999999996 4999999 89999999999998742 133344444 34667777665431 111
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC--CCcEEEEEcCCc-ccccccH-HHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ--GKEYVFAANSDN-LGAIVDL-KILN 234 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~--G~eyi~v~nvDN-L~~~~Dp-~~lg 234 (441)
+ +. ..++..++.| ...++.. .++.+... +.+++++.+.|. |...-+- .++.
T Consensus 67 ~----------------~~------~~~~~~~~~~-~~~~i~~--~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~ 121 (223)
T cd02513 67 F----------------LR------PAELATDTAS-SIDVILH--ALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIE 121 (223)
T ss_pred e----------------eC------ChHHCCCCCC-cHHHHHH--HHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 0 00 0112222222 1112211 13333332 357999999999 6543222 3444
Q ss_pred HHHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 235 HLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 235 ~~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
.+..++.+.++-+++.... -..+.....+| ...+-+. +.... ..++.......|.+.++++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~~-~~q~~~~~~~~n~~~y~~~~~~~~~~ 189 (223)
T cd02513 122 LLLSEGADSVFSVTEFHRF-PWRALGLDDNG-LEPVNYP--EDKRT-RRQDLPPAYHENGAIYIAKREALLES 189 (223)
T ss_pred HHHhCCCCEEEEEEecCcC-cHHheeeccCC-ceeccCc--ccccC-CcCCChhHeeECCEEEEEEHHHHHhc
Confidence 4555677877776654332 22333222333 2232221 11111 11122333456999999999988763
No 73
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=98.09 E-value=3.7e-05 Score=72.57 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHH
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l 121 (441)
+++|+||||.|+|||...||.++++ .|+|++++.++++...
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i-~Gkpll~~~i~~l~~~ 41 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL-GGKPVLEHTLEAFLAH 41 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE-CCeEHHHHHHHHHhcC
Confidence 4679999999999998789999999 8999999999999864
No 74
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.07 E-value=2.3e-05 Score=71.48 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=43.0
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHH
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSK 145 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~ 145 (441)
+++|+||||.|+|||. ||.++++ .|+|++++.++++.... + -+++|-|+. .++...+
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~-~g~~li~~~i~~l~~~~----~-~~i~vv~~~-~~~~~~~ 57 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPL-DGKPLLRHALDAALAAG----L-SRVIVVLGA-EADAVRA 57 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCee-CCeeHHHHHHHHHHhCC----C-CcEEEECCC-cHHHHHH
Confidence 4689999999999985 9999999 89999999999988752 1 245555544 3443333
No 75
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=97.93 E-value=0.00039 Score=67.53 Aligned_cols=179 Identities=9% Similarity=0.102 Sum_probs=100.0
Q ss_pred EEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEEe
Q 013550 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (441)
Q Consensus 82 vv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~ 161 (441)
+|++|+|.||||+ +|.++++ .|+|++++.+++++.. ++ =.+++-|. ++.+.+.++++. .++.
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l-~GkPli~~~le~~~~~----~~-d~VvVvt~---~~~i~~~~~~~g---~~~v--- 63 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI-FGKPMIVHVAENANES----GA-DRCIVATD---DESVAQTCQKFG---IEVC--- 63 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc-CCcCHHHHHHHHHHhC----CC-CeEEEEeC---HHHHHHHHHHcC---CEEE---
Confidence 6899999999994 8999999 9999999999997653 21 13444443 355666666542 1211
Q ss_pred eccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccHHHHHHHH---
Q 013550 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHLI--- 237 (441)
Q Consensus 162 Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~--- 237 (441)
+.. ...+.|...+..++. .+.....+++++.++|. |.. |..+..++
T Consensus 64 --------------~~~-------~~~~~Gt~r~~~~~~------~l~~~~~d~Vli~~gD~Pli~---~~~I~~li~~~ 113 (238)
T TIGR00466 64 --------------MTS-------KHHNSGTERLAEVVE------KLALKDDERIVNLQGDEPFIP---KEIIRQVADNL 113 (238)
T ss_pred --------------EeC-------CCCCChhHHHHHHHH------HhCCCCCCEEEEEcCCcCcCC---HHHHHHHHHHH
Confidence 100 113455554444332 11112357899999999 653 34443332
Q ss_pred -HcCCcceEEEeeeccCCc-----cceEEEEeCCeeEEEEeec--CC--hhhhhhhccCCCc-ceEEEeeeeeeHHHHHH
Q 013550 238 -QNKNEYCMEVTPKTLADV-----KGGTLISYEGKVQLLEIAQ--VP--DEHVNEFKSIEKF-KIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 238 -~~~~~~~~~vv~k~~~de-----kgGvl~~~~g~~~lvEysq--~~--~~~~~~~~~~~~~-~~fNtnn~~~~l~~l~~ 306 (441)
+.+++++.-+++.+++.+ .+-++...+|+. +=++. +| .+.....+..... .+-|++.|-|+.++|++
T Consensus 114 ~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~a--lyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~ 191 (238)
T TIGR00466 114 ATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYA--LYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEE 191 (238)
T ss_pred hcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeE--EEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHH
Confidence 334666766666655333 122333345542 11122 22 1111100111112 23499999999999999
Q ss_pred HHHh
Q 013550 307 LVEA 310 (441)
Q Consensus 307 ~~~~ 310 (441)
...-
T Consensus 192 ~~~~ 195 (238)
T TIGR00466 192 YVAW 195 (238)
T ss_pred HHhC
Confidence 8753
No 76
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=97.90 E-value=8.4e-05 Score=68.26 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=40.4
Q ss_pred EEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCC
Q 013550 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNT 139 (441)
Q Consensus 82 vv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T 139 (441)
+|+||||.|+||| .||.++++ .|+|++++.++++.+.. + -+++|.++...
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~-~g~pll~~~i~~l~~~~----~-~~iivv~~~~~ 51 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY-KGKTILEHVVDNALRLF----F-DEVILVLGHEA 51 (188)
T ss_pred eEEECCCCcccCC--CCceeccc-CCeeHHHHHHHHHHHcC----C-CcEEEEeCCcH
Confidence 6899999999998 59999999 89999999999988642 1 24666666543
No 77
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=97.86 E-value=0.00025 Score=67.04 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHH
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l 121 (441)
++|+||||.|||||.+.||.++++ .|+|++++.++++...
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l-~gkpll~~~l~~l~~~ 40 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLEL-GGRPLLEHTLDAFLAH 40 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEE-CCeEHHHHHHHHHhcC
Confidence 368999999999998889999999 8999999999999864
No 78
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=97.79 E-value=3.9e-05 Score=73.68 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHh
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~ 150 (441)
+++|+||||.|+|||.+.||.++++ .|+|++++.++++.... .--.+++.++........++++++
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~l~~l-~gkpll~~~i~~~~~~~----~~~~ivVv~~~~~~~~~~~~~~~~ 68 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKMWLDL-VGEPIFIHALRPFLADN----RCSKIIIVTQAQERKHVQDLMKQL 68 (230)
T ss_pred eEEEEECCeeccccCCCCCcceeEE-CCeEHHHHHHHHHHcCC----CCCEEEEEeChhhHHHHHHHHHhc
Confidence 6889999999999998899999999 89999999999987642 112466666655445555566554
No 79
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=97.78 E-value=0.00021 Score=65.52 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=40.2
Q ss_pred EEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCC
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFN 138 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~ 138 (441)
+.|+||||.|+|||. ||.++++ .|+|+++..++++...- -+++|.|+..
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~-~g~~ll~~~i~~l~~~~------~~iivv~~~~ 50 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLEL-GGKPLLEHVLERLKPLV------DEVVISANRD 50 (181)
T ss_pred cEEEECCCccccCCC--CceeeEE-CCEEHHHHHHHHHHhhc------CEEEEECCCC
Confidence 579999999999986 9999999 89999999999988641 2456655554
No 80
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=97.77 E-value=0.00032 Score=64.59 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHH
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~ 120 (441)
+++|+||||.|||||. .||.++++ .|+|++++.++.+..
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i-~g~pll~~~l~~l~~ 39 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL-GGKPLIEHVLARLRP 39 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE-CCEEHHHHHHHHHHh
Confidence 4689999999999984 39999999 899999999999864
No 81
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=97.70 E-value=0.00052 Score=71.42 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=39.7
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHH
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l 121 (441)
.++++|+||||.|||||...||.++++ .|+|++++.++.+...
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKqll~l-~GkPll~~tl~~l~~~ 46 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQWLRI-GGKPLWLHVLENLSSA 46 (378)
T ss_pred CcceEEEECCCCCccCCCCCCeeEEEE-CCeeHHHHHHHHHhcC
Confidence 467899999999999998899999999 8999999999998875
No 82
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.70 E-value=0.0002 Score=74.13 Aligned_cols=42 Identities=21% Similarity=0.420 Sum_probs=37.4
Q ss_pred cCCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHH
Q 013550 77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIEN 120 (441)
Q Consensus 77 l~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~ 120 (441)
+.++++|+||||.||||| ..||.++++ .|+|+++..++.+..
T Consensus 3 ~~~i~~VILAgG~s~Rmg-g~~K~ll~i-~Gkpll~~~i~~l~~ 44 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN-GRDKALILL-GGKPLIERVVDRLRP 44 (366)
T ss_pred CCCceEEEEcCCcccCCC-CCCCceeEE-CCeeHHHHHHHHHHh
Confidence 347899999999999996 379999999 799999999999874
No 83
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.69 E-value=7.2e-05 Score=72.27 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHH
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEK 149 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~ 149 (441)
+++|+||||.|+|||.+.||-.+++ .|+|+|.+.++.+.+.. .+- +++..+....+.+++++.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l-~Gkpvl~~tl~~f~~~~-----~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLEL-GGKPVLEYTLEAFLASP-----EIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEE-TTEEHHHHHHHHHHTTT-----TESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEE-CCeEeHHHHHHHHhcCC-----CCCeEEEEecchhHHHHHHhhcC
Confidence 5899999999999999999999999 89999999999988743 233 5555566666777777766
No 84
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.69 E-value=0.0013 Score=70.55 Aligned_cols=194 Identities=12% Similarity=0.130 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCCcCCC----CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCC
Q 013550 80 LVVLKLNGGLGTTMGC----TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (441)
Q Consensus 80 vavv~LaGGlGTRLG~----~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~ 155 (441)
+-.|+||||.||||-. ..||.++++.+++|+||..++++..+. +.-++ |.|+..-.+.+++-+.+......
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~----~~~~i-ivt~~~~~~~v~~ql~~~~~~~~ 80 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVE----CESPV-VICNEQHRFIVAEQLRQLNKLTE 80 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCC----CCCcE-EEeCHHHHHHHHHHHHhcCCccc
Confidence 6789999999999962 369999999777999999999988753 33355 55777555556656654332112
Q ss_pred ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC--C-CcEEEEEcCCcccccccHHH
Q 013550 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ--G-KEYVFAANSDNLGAIVDLKI 232 (441)
Q Consensus 156 ~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~--G-~eyi~v~nvDNL~~~~Dp~~ 232 (441)
++. ++ | ..-.++|-- .+.|+ .+.++ + -.-+.|...|.+..-. ..|
T Consensus 81 ~ii-----------------~E-P---~~rnTApai---alaa~-------~~~~~~~~~~~~v~vlPaDH~I~d~-~~F 128 (478)
T PRK15460 81 NII-----------------LE-P---AGRNTAPAI---ALAAL-------AAKRHSPESDPLMLVLAADHVIADE-DAF 128 (478)
T ss_pred cEE-----------------ec-C---CCCChHHHH---HHHHH-------HHHHhcCCCCCeEEEeccccccCCH-HHH
Confidence 222 21 2 111122221 11111 11122 2 2478899999976542 223
Q ss_pred HHHH------HHcCCcceEEEeeeccCCccceEEEEe---C-----CeeEEEEeecCChh-hhhhhccCCCcceEEEeee
Q 013550 233 LNHL------IQNKNEYCMEVTPKTLADVKGGTLISY---E-----GKVQLLEIAQVPDE-HVNEFKSIEKFKIFNTNNL 297 (441)
Q Consensus 233 lg~~------~~~~~~~~~~vv~k~~~dekgGvl~~~---~-----g~~~lvEysq~~~~-~~~~~~~~~~~~~fNtnn~ 297 (441)
.... ++.+. +.+--++-+.|.-.-|-+-.. + +-..|..+-|=|+. .++.|-. .+-.+.|++.+
T Consensus 129 ~~~i~~A~~~A~~~~-lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~-~G~y~WNsGiF 206 (478)
T PRK15460 129 RAAVRNAMPYAEAGK-LVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVA-SGEYYWNSGMF 206 (478)
T ss_pred HHHHHHHHHHHhcCC-EEEEecCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHH-cCCEEEeccee
Confidence 3222 22222 333344555666666655431 1 22455566666654 3333433 23346799999
Q ss_pred eeeHHHHHHHHHhcc
Q 013550 298 WVNLKAIKRLVEADA 312 (441)
Q Consensus 298 ~~~l~~l~~~~~~~~ 312 (441)
.|+.+.+.+.++++.
T Consensus 207 ~~~a~~~l~~~~~~~ 221 (478)
T PRK15460 207 LFRAGRYLEELKKYR 221 (478)
T ss_pred heeHHHHHHHHHHHC
Confidence 999999988887643
No 85
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=97.68 E-value=7.6e-05 Score=73.40 Aligned_cols=67 Identities=19% Similarity=0.323 Sum_probs=49.9
Q ss_pred cCCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHH
Q 013550 77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEK 149 (441)
Q Consensus 77 l~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~ 149 (441)
..++++|+||||.|||||.+.||.++++ .|+|++++.++.+.... .+. ++|.++..-.+..++.+++
T Consensus 22 ~~~i~aIILAAG~gsRmg~~~pKqll~l-~Gkpll~~tl~~~~~~~-----~i~~IvVV~~~~~~~~~~~~~~~ 89 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMGANMPKQYLPL-LGQPIALYSLYTFARMP-----EVKEIVVVCDPSYRDVFEEAVEN 89 (252)
T ss_pred cCceEEEEEcccccccCCCCCCcceeEE-CCeEHHHHHHHHHHhCC-----CCCeEEEEeCHHHHHHHHHHHHh
Confidence 4578999999999999999999999999 89999999999887642 133 4444443334444444443
No 86
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=97.58 E-value=0.00053 Score=64.85 Aligned_cols=107 Identities=19% Similarity=0.310 Sum_probs=71.8
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
..+..|+||||+|+|| .+|+++++ .|++++|+.+++++.+. .-++.++....+. |.+ +...+
T Consensus 3 ~~~~~vILAGG~srRm---~dK~l~~~-~g~~lie~v~~~L~~~~-------~~vvi~~~~~~~~---~~~----~g~~v 64 (192)
T COG0746 3 TPMTGVILAGGKSRRM---RDKALLPL-NGRPLIEHVIDRLRPQV-------DVVVISANRNQGR---YAE----FGLPV 64 (192)
T ss_pred CCceEEEecCCccccc---ccccccee-CCeEHHHHHHHHhcccC-------CEEEEeCCCchhh---hhc----cCCce
Confidence 4678899999999999 89999999 99999999999999874 2334444443331 211 11222
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccHHHHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHL 236 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~ 236 (441)
. . -..+|.|=+- |++..|..-+-+|++|.-+|. +.. +.++.++
T Consensus 65 v-----------------~----------D~~~~~GPL~------Gi~~al~~~~~~~~~v~~~D~P~i~---~~lv~~l 108 (192)
T COG0746 65 V-----------------P----------DELPGFGPLA------GILAALRHFGTEWVLVLPCDMPFIP---PELVERL 108 (192)
T ss_pred e-----------------e----------cCCCCCCCHH------HHHHHHHhCCCCeEEEEecCCCCCC---HHHHHHH
Confidence 1 1 1223333222 778888888899999999999 543 3555555
Q ss_pred HH
Q 013550 237 IQ 238 (441)
Q Consensus 237 ~~ 238 (441)
.+
T Consensus 109 ~~ 110 (192)
T COG0746 109 LS 110 (192)
T ss_pred HH
Confidence 44
No 87
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.51 E-value=0.00019 Score=66.38 Aligned_cols=61 Identities=25% Similarity=0.407 Sum_probs=50.7
Q ss_pred EEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHh
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~ 150 (441)
.+|+||||+|||||. .=|++++| .||+++++.++.++..- =-.++-+|.+| ..|++|+++-
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV-~GkpLI~~v~~al~~~~------d~i~v~isp~t-p~t~~~~~~~ 62 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV-CGKPLIDRVLEALRKIV------DEIIVAISPHT-PKTKEYLESV 62 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh-CCccHHHHHHHHHHhhc------CcEEEEeCCCC-HhHHHHHHhc
Confidence 579999999999997 56889999 99999999999988732 35788888875 5688888764
No 88
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.49 E-value=0.00041 Score=65.50 Aligned_cols=40 Identities=28% Similarity=0.422 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHH
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l 121 (441)
++.+|+||||.|+|||. +|.++++ .|+|+++..++.+...
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~-~g~~ll~~~i~~l~~~ 46 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPW-QGVPLLQRVARIAAAC 46 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEE-CCEeHHHHHHHHHHhh
Confidence 67889999999999985 7999999 8999999999998753
No 89
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=97.47 E-value=0.00057 Score=63.43 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=38.9
Q ss_pred EEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCC
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFN 138 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~ 138 (441)
++|+||||.|+|||. +|.++++ .|+|+++..++.+.+.. + -.++|-++..
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~-~g~~ll~~~i~~~~~~~----~-~~i~vv~~~~ 51 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL-GETTLGSASLKTALSSR----L-SKVIVVIGEK 51 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee-CCccHHHHHHHHHHhCC----C-CcEEEEeCCc
Confidence 579999999999985 7999999 79999999998876532 1 2455555543
No 90
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.41 E-value=0.0077 Score=60.87 Aligned_cols=197 Identities=16% Similarity=0.213 Sum_probs=114.2
Q ss_pred eEEEEEcCCCCCcC----CCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCC
Q 013550 80 LVVLKLNGGLGTTM----GCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (441)
Q Consensus 80 vavv~LaGGlGTRL----G~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~ 155 (441)
+.-|+||||.|||| ....||-.+.+.+++|+||..++|+..+.. .-.+++.|+..-...+++=|.+-.-
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~----~~~~~vVtne~~~f~v~eql~e~~~--- 74 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGD----IEEPLVVTNEKYRFIVKEQLPEIDI--- 74 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCC----ccCeEEEeCHHHHHHHHHHHhhhhh---
Confidence 45689999999999 458999999998899999999999998752 2355666665544444444443110
Q ss_pred ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHH
Q 013550 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNH 235 (441)
Q Consensus 156 ~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~ 235 (441)
+. ..+ +...|-|-=- =.|..- +.+....+.|-.-+.|.-.|-+.+. ...|...
T Consensus 75 ~~------------~~~------------illEP~gRnT-ApAIA~-aa~~~~~~~~d~~~lVlpsDH~I~d-~~af~~a 127 (333)
T COG0836 75 EN------------AAG------------IILEPEGRNT-APAIAL-AALSATAEGGDALVLVLPSDHVIAD-EEAFLNA 127 (333)
T ss_pred cc------------ccc------------eEeccCCCCc-HHHHHH-HHHHHHHhCCCcEEEEecCcceecc-HHHHHHH
Confidence 00 001 1222322110 011110 2344444455446888999987654 2234332
Q ss_pred H------HHcCCcceEEEeeeccCCccceEEEEe-----CCeeEEEEeecCChhh-hhhhccCCCcceEEEeeeeeeHHH
Q 013550 236 L------IQNKNEYCMEVTPKTLADVKGGTLISY-----EGKVQLLEIAQVPDEH-VNEFKSIEKFKIFNTNNLWVNLKA 303 (441)
Q Consensus 236 ~------~~~~~~~~~~vv~k~~~dekgGvl~~~-----~g~~~lvEysq~~~~~-~~~~~~~~~~~~fNtnn~~~~l~~ 303 (441)
. ++++.-+.+=+++ +.|.-.-|-+-.- .+-..|-++-|=|+.. ++++-..++| +.|.+...|+.+.
T Consensus 128 v~~A~~~A~~g~lVTfGI~P-t~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y-~WNSGmF~Fra~~ 205 (333)
T COG0836 128 VKKAEKAAEEGGIVTFGIPP-TRPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEY-LWNSGMFLFRASV 205 (333)
T ss_pred HHHHHHHHHcCCEEEEecCC-CCCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCce-EeeccceEEEHHH
Confidence 2 3344333333433 4444444554331 1456676676767643 3334343334 6799999999999
Q ss_pred HHHHHHhcc
Q 013550 304 IKRLVEADA 312 (441)
Q Consensus 304 l~~~~~~~~ 312 (441)
+.+.++++.
T Consensus 206 ~l~e~~~~~ 214 (333)
T COG0836 206 FLEELKKHQ 214 (333)
T ss_pred HHHHHHhhC
Confidence 888887653
No 91
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.39 E-value=0.00027 Score=66.56 Aligned_cols=41 Identities=22% Similarity=0.424 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCC-CchHHHHHHHHHHH
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNG-LTFLDLIVIQIENL 121 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~g-ktfLdl~~~qi~~l 121 (441)
.++++|+||||+|+||| .+|.++++ .| +|+++..++++..+
T Consensus 7 ~~i~~vILAgG~s~RmG--~~K~ll~~-~g~~~ll~~~i~~l~~~ 48 (196)
T PRK00560 7 DNIPCVILAGGKSSRMG--ENKALLPF-GSYSSLLEYQYTRLLKL 48 (196)
T ss_pred cCceEEEECCcccccCC--CCceEEEe-CCCCcHHHHHHHHHHHh
Confidence 57889999999999998 58999999 66 99999999998754
No 92
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=97.32 E-value=0.0004 Score=66.32 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=38.7
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHH
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l 121 (441)
++.+|+||||.|||||...||.++++ .|+|++++.++++...
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~-~g~pli~~~l~~l~~~ 44 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPL-GGKPILEHTLEAFLAH 44 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEE-CCEEHHHHHHHHHHcC
Confidence 57889999999999998899999999 8999999999999864
No 93
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=97.08 E-value=0.00058 Score=63.55 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHH
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIE 119 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~ 119 (441)
.++.+|+||||.|+|||. .||.++++ .|+|+++..++.+.
T Consensus 2 ~~~~~vILA~G~s~Rm~~-~~K~ll~~-~g~~ll~~~i~~l~ 41 (193)
T PRK00317 2 PPITGVILAGGRSRRMGG-VDKGLQEL-NGKPLIQHVIERLA 41 (193)
T ss_pred CCceEEEEcCCCcccCCC-CCCceeEE-CCEEHHHHHHHHHh
Confidence 367899999999999963 69999999 89999999999887
No 94
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.90 E-value=0.0017 Score=67.28 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=36.2
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHH
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l 121 (441)
.++..|+||||.|+||| .+|.++++ .|+|+++..++.+...
T Consensus 173 ~~i~~iILAGG~SsRmG--~~K~ll~~-~Gk~ll~~~l~~l~~~ 213 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG--SDKALLSY-HESNQLVHTAALLRPH 213 (369)
T ss_pred CCceEEEEcCCccccCC--CCcEEEEE-CCccHHHHHHHHHHhh
Confidence 35689999999999998 48999999 8999999999988753
No 95
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=96.79 E-value=0.0024 Score=62.05 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHH
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIE 148 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~ 148 (441)
.++.+|+||+|.|||||.+.||-.+++ .|+++|++.++-++... .-=..+|.++..-++...++.+
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~l~l-~g~pll~~tl~~f~~~~----~i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQYLEL-GGRPLLEHTLEAFLESP----AIDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceEEEE-CCEEehHHHHHHHHhCc----CCCeEEEEEChhhhHHHHHhhh
Confidence 367899999999999999999999999 99999999999998754 1124666776656665555554
No 96
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=96.69 E-value=0.0017 Score=66.80 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=36.3
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHH
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l 121 (441)
.+..|+||||.|+||| .+|.++++ .|+|+++.+++.+..+
T Consensus 160 ~i~~IILAGGkSsRMG--~dKaLL~~-~GkpLl~~~ie~l~~~ 199 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKALLNY-QGQPHAQYLYDLLAKY 199 (346)
T ss_pred CceEEEEeccccccCC--CCccccee-CCccHHHHHHHHHHhh
Confidence 7789999999999998 59999999 7999999999888764
No 97
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=96.60 E-value=0.025 Score=54.15 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=43.2
Q ss_pred EEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCC-hhHHHHHHHH
Q 013550 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNT-HDDTSKIIEK 149 (441)
Q Consensus 82 vv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T-~e~T~~~l~~ 149 (441)
+|+||||.++||| +|.++++ .|+|++++.++.+.... .--.++|-|+..- ++.+.+++..
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l-~Gkpli~~~i~~l~~~~----~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPL-GGKPLLEHLLDRLKRSK----LIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCCCCCCCC---CCccccc-CCccHHHHHHHHHHhCC----CCCeEEEECCCCcccHHHHHHHHH
Confidence 5889999999995 5999999 89999999999888632 1113555555443 2566666653
No 98
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=96.32 E-value=0.0056 Score=57.71 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=46.7
Q ss_pred EEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHH
Q 013550 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK 149 (441)
Q Consensus 82 vv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~ 149 (441)
.|+||.|+|||+. .+.||+++.| .|++++|-+++|++..+ |-=++...++-+|.- +||++
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~LlkV-~g~plIErqI~~L~e~g------I~dI~IVvGYlkE~F-eYLkd 65 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKSLLKV-NGEPLIERQIEQLREAG------IDDITIVVGYLKEQF-EYLKD 65 (231)
T ss_pred eEEEecccccccccccccCChHHHHh-cCcccHHHHHHHHHHCC------CceEEEEeeehHHHH-HHHHH
Confidence 6899999999996 5899999999 99999999999998865 554555555555543 45544
No 99
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=96.25 E-value=0.24 Score=47.62 Aligned_cols=180 Identities=10% Similarity=0.089 Sum_probs=100.2
Q ss_pred EEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEEe
Q 013550 82 VLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFN 161 (441)
Q Consensus 82 vv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~ 161 (441)
+|++|.|-++||+ .|-+.++ .|++++++.++++.... . +-.++.+++. +++.++.+++. ..+.+
T Consensus 2 aiIpArG~Skr~~---~Knl~~l-~GkpLi~~ti~~a~~s~----~-~d~IvVstd~--~~i~~~a~~~g---~~v~~-- 65 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPF-CGKPMIAYSIEAALNSG----L-FDKVVVSTDD--EEIAEVAKSYG---ASVPF-- 65 (222)
T ss_pred EEEccCCCCCCCC---Cccchhc-CCcCHHHHHHHHHHhCC----C-CCEEEEeCCC--HHHHHHHHHcC---CEeEE--
Confidence 5888999999995 5888899 89999999999987743 1 3344445543 66777777653 12211
Q ss_pred eccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHH-CCCcEEEEEcCCc-ccccccH-HHHHHHHH
Q 013550 162 QSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS-QGKEYVFAANSDN-LGAIVDL-KILNHLIQ 238 (441)
Q Consensus 162 Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~-~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~~ 238 (441)
.. + .++.-++.|-.. ++.. + ++.+.. ...+++++.+.|. |...-|- .++..+.+
T Consensus 66 --------------~r-~-----~~l~~d~~~~~~-si~~-~-l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 66 --------------LR-P-----KELADDFTGTAP-VVKH-A-IEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ 122 (222)
T ss_pred --------------eC-h-----HHHcCCCCCchH-HHHH-H-HHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence 00 1 111222222211 1111 2 333422 2468899999999 6654333 24444455
Q ss_pred cCCcceEEEeeecc-CCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHH
Q 013550 239 NKNEYCMEVTPKTL-ADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 239 ~~~~~~~~vv~k~~-~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~ 306 (441)
.+++.++-|++... +.. ......+|++...-.... ....++.......|.+.++++.+.+.+
T Consensus 123 ~~~ds~~sv~~~~~~~~~--~~~~~~~g~~~~~~~~~~----~~~rQd~~~~y~~nga~y~~~~~~~~~ 185 (222)
T TIGR03584 123 PNAHFVFSVTSFAFPIQR--AFKLKENGGVEMFFPEHF----NTRSQDLEEAYHDAGQFYWGKSQAWLE 185 (222)
T ss_pred CCCCEEEEeeccCCChHH--heEECCCCcEEecCCCcc----cCCCCCCchheeeCCeEEEEEHHHHHh
Confidence 67899888876432 211 111223454333211111 111123333444599999999998764
No 100
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=94.83 E-value=0.042 Score=54.63 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=97.9
Q ss_pred EEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHH--------
Q 013550 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEK-------- 149 (441)
Q Consensus 82 vv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~-------- 149 (441)
+|+.|.|+|||+= -..||-|+|| -+|+..|++++.....+ +- ++|.|+.+ ...++.||..
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPI-vdKP~IqYiVeEa~~aG------Ie~i~iVTgr~-K~~IeDhFD~s~ELE~~L 78 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPI-VDKPLIQYIVEEAVAAG------IEEILIVTGRG-KRAIEDHFDTSYELENTL 78 (291)
T ss_pred EEEEccCcccccccccccCchhhccc-cCchhHHHHHHHHHHcC------CCEEEEEecCC-cchHHHhCcCcHHHHHHH
Confidence 5788999999994 3789999999 67999999999988765 44 44445443 3355555532
Q ss_pred --hCC---------C--CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEE
Q 013550 150 --YSK---------S--NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYV 216 (441)
Q Consensus 150 --~~~---------~--~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi 216 (441)
.+. . ..++++. -...|.|-|+.- ...+.| -|-|.+
T Consensus 79 ~~~~K~~~L~~v~~i~~~~~i~~v------------------------RQ~e~~GLGhAV------l~A~~~--vg~EpF 126 (291)
T COG1210 79 EKRGKRELLEEVRSIPPLVTISFV------------------------RQKEPLGLGHAV------LCAKPF--VGDEPF 126 (291)
T ss_pred HHhCHHHHHHHHHhcccCceEEEE------------------------ecCCCCcchhHH------Hhhhhh--cCCCce
Confidence 110 0 1223332 223688888843 123333 378877
Q ss_pred EEEcCCcccccccHHHHHHH----HHcCCc-ceEEEeeeccCCccceEEE----EeCCeeEEEEeecCChhhhhhhccCC
Q 013550 217 FAANSDNLGAIVDLKILNHL----IQNKNE-YCMEVTPKTLADVKGGTLI----SYEGKVQLLEIAQVPDEHVNEFKSIE 287 (441)
Q Consensus 217 ~v~nvDNL~~~~Dp~~lg~~----~~~~~~-~~~~vv~k~~~dekgGvl~----~~~g~~~lvEysq~~~~~~~~~~~~~ 287 (441)
.|.=.|-|+..--| .+.-+ .+.+.. ++.+-|++... .+.|++. ..+|.+++...-|=|+-.- .
T Consensus 127 aVlL~Ddl~~~~~~-~l~qmi~~ye~~g~svi~v~ev~~e~v-~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~------A 198 (291)
T COG1210 127 AVLLPDDLVDSEKP-CLKQMIELYEETGGSVIGVEEVPPEDV-SKYGVIDPGEPVEKGVYKVKGMVEKPKPEE------A 198 (291)
T ss_pred EEEeCCeeecCCch-HHHHHHHHHHHhCCcEEEEEECCHHHC-cccceEecCccccCCeEEEEEEEECCCCCC------C
Confidence 77777776544223 33333 333443 33344444444 3456665 2345566655555442210 0
Q ss_pred CcceEEEeeeeeeHHHHHH
Q 013550 288 KFKIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 288 ~~~~fNtnn~~~~l~~l~~ 306 (441)
.-.+.=++-|.++-+....
T Consensus 199 PSnlai~GRYil~p~IFd~ 217 (291)
T COG1210 199 PSNLAIVGRYVLTPEIFDI 217 (291)
T ss_pred CcceeeeeeeecCHHHHHH
Confidence 1123344556666555443
No 101
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=92.93 E-value=0.13 Score=48.84 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=43.9
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCc-CEEEeeCCC
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFN 138 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~i-Pl~IMtS~~ 138 (441)
.+++.|+||-|.||||| .+|-++|+ .|+|++...+++...-. + ..++.|+..
T Consensus 4 ~~v~~VvLAAGrssRmG--~~KlLap~-~g~plv~~~~~~a~~a~------~~~vivV~g~~ 56 (199)
T COG2068 4 STVAAVVLAAGRSSRMG--QPKLLAPL-DGKPLVRASAETALSAG------LDRVIVVTGHR 56 (199)
T ss_pred cceEEEEEcccccccCC--Ccceeccc-CCCcHHHHHHHHHHhcC------CCeEEEEeCcc
Confidence 57899999999999999 89999999 99999999999887632 3 456666666
No 102
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=89.44 E-value=1.9 Score=46.23 Aligned_cols=119 Identities=20% Similarity=0.186 Sum_probs=69.5
Q ss_pred CCC-CCCccceee-----CCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHH----hC---CCCCceEE
Q 013550 93 MGC-TGPKSVIEV-----RNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEK----YS---KSNVEIHT 159 (441)
Q Consensus 93 LG~-~~PK~~l~v-----~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~----~~---~~~~~i~~ 159 (441)
|++ ..|||++|. ..-.+|-|.++|-.+..... | .+.+=+-.|..-.+.-++.+++ +. +-+-+|.|
T Consensus 161 LnYg~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~-g-~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~f~Isf 238 (513)
T PF14134_consen 161 LNYGNLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSN-G-KANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVKFEISF 238 (513)
T ss_pred CCCCCCCceeeecccCCCCCcCcHHHHHHHHHHHHhcC-C-eEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCceEEEEe
Confidence 445 579999996 23456777777766665433 3 2344444454433233333332 11 11224555
Q ss_pred Eeecc---ceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCccc
Q 013550 160 FNQSQ---YPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLG 225 (441)
Q Consensus 160 f~Q~~---~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~ 225 (441)
=.|.. -.+++.|+...... ..++..-|.|||. +++-|-+..-.-|||=|+||.+
T Consensus 239 S~Qk~sTDTIAv~~dN~pFR~~---dG~LlFRPgGHGA---------LieNLN~ldaDiIFIKNIDNVv 295 (513)
T PF14134_consen 239 SEQKPSTDTIAVDPDNTPFRNE---DGSLLFRPGGHGA---------LIENLNDLDADIIFIKNIDNVV 295 (513)
T ss_pred cccCCCCCeeEECCCCCccCCC---CCCEEeCCCcchH---------HHhhhccccCCEEEEeCccccC
Confidence 45543 23455554443333 3789999999998 4555656677899999999954
No 103
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=81.52 E-value=1.8 Score=39.60 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=45.1
Q ss_pred hhccCCCCceeeeceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeecc
Q 013550 379 LSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLEN 432 (441)
Q Consensus 379 ~~r~~~~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~~ 432 (441)
+.+.+-.|+-+-|-.-.++|||+|+.+-++-=.+++.|..| +|.|-.+.++|.
T Consensus 6 e~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aG-PI~iGEnniiEE 58 (190)
T KOG4042|consen 6 ETSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAG-PIYIGENNIIEE 58 (190)
T ss_pred cceeeecCceEEEEecccccceEecCCcEecceEEEEcccC-CEEEccCchhhh
Confidence 34566689999999999999999999999999999998876 688888888765
No 104
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=80.16 E-value=0.8 Score=47.66 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=52.0
Q ss_pred CeEEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCC
Q 013550 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSK 152 (441)
Q Consensus 79 kvavv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~ 152 (441)
+...|++|||-||||- ...||.+||| .+++.+.+-+..+++.+ . --+++.+-..-.+++++.|.++-.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPI-gn~PMi~YpL~~L~~~g----f-teiiVv~~e~e~~~i~~al~~~~~ 79 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPI-GNKPMILYPLNSLEQAG----F-TEIIVVVNEDEKLDIESALGSNID 79 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhccc-CCcceeeeehhHHHhcC----C-eEEEEEecHHHHHHHHHHHhcCCc
Confidence 4567899999999994 4889999999 99999999999888764 1 134445555566788888876543
No 105
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=69.99 E-value=17 Score=35.58 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=61.0
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHh-----------------hhhCCCcCEEEeeCCCC--
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLN-----------------AKYGCNVPLLLMNSFNT-- 139 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~-----------------~~~g~~iPl~IMtS~~T-- 139 (441)
+..+|+-|==..|||- =|++-.+ .|+|..+..++|..+-+ +.+|. -++|||.+-
T Consensus 3 ~~~viIPAR~~STRLp---gKPLadI-~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G~---~avmT~~~h~S 75 (247)
T COG1212 3 KFVVIIPARLASTRLP---GKPLADI-GGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFGG---EAVMTSKDHQS 75 (247)
T ss_pred ceEEEEecchhcccCC---CCchhhh-CCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC---EEEecCCCCCC
Confidence 5678888877777771 2667778 99999999999987532 23443 579999863
Q ss_pred -hhHHHHHHHHhCCCCCceEEEeeccceee
Q 013550 140 -HDDTSKIIEKYSKSNVEIHTFNQSQYPRL 168 (441)
Q Consensus 140 -~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~ 168 (441)
.|.+.+.+++....+..+..=.|+..|++
T Consensus 76 GTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i 105 (247)
T COG1212 76 GTDRLAEVVEKLGLPDDEIIVNVQGDEPFI 105 (247)
T ss_pred ccHHHHHHHHhcCCCcceEEEEccCCCCCC
Confidence 35666777777665677888889988887
No 106
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=65.61 E-value=79 Score=26.66 Aligned_cols=164 Identities=12% Similarity=0.129 Sum_probs=78.8
Q ss_pred eeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEEeeccceeeecCCCcccCCCCC
Q 013550 102 IEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGK 181 (441)
Q Consensus 102 l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~ 181 (441)
+|+.....+|.-.++.++.+ .....-++|..... .+.|.+.++++......+.++.+..
T Consensus 4 ip~~n~~~~l~~~l~sl~~q---~~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~----------------- 62 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQ---TDPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPE----------------- 62 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHH---SGCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCC-----------------
T ss_pred EEeeCCHHHHHHHHHHHhhc---cCCCEEEEEecccc-ccccccccccccccccccccccccc-----------------
Confidence 45555566677666766665 33446677777777 5677888887643223343322211
Q ss_pred CCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccHHHHHHHHHcCCcceEEEeeeccCCccceEE
Q 013550 182 TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTL 260 (441)
Q Consensus 182 ~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl 260 (441)
..|.+. +.-..+....-+|+++.+.|. +-.-.-..++.++.+.+.++..-.+.....+...-..
T Consensus 63 -------n~g~~~--------~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (169)
T PF00535_consen 63 -------NLGFSA--------ARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDR 127 (169)
T ss_dssp -------CSHHHH--------HHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEEC
T ss_pred -------cccccc--------cccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCcccccc
Confidence 113333 222333334556999999999 4333234566666666665544333222222111000
Q ss_pred EEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 261 ISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 261 ~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
. ... .+...................+-.++.+++.++++++
T Consensus 128 ~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 128 R--LRF----SFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp C--CTS----EEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred c--cch----hhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 0 000 1111111111111223345556667778888877753
No 107
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=64.75 E-value=24 Score=32.85 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=24.8
Q ss_pred EEEEcCCCCCcCCCCC-C-ccceeeCCCCchHHHHHHHHHHH
Q 013550 82 VLKLNGGLGTTMGCTG-P-KSVIEVRNGLTFLDLIVIQIENL 121 (441)
Q Consensus 82 vv~LaGGlGTRLG~~~-P-K~~l~v~~gktfLdl~~~qi~~l 121 (441)
+|+-| |+|+++ | |.+.++ .|+|++++.++++++.
T Consensus 2 aiIpA-----R~gS~rlp~Knl~~l-~gkpLi~~~i~~a~~s 37 (217)
T PF02348_consen 2 AIIPA-----RGGSKRLPGKNLKPL-GGKPLIEYVIERAKQS 37 (217)
T ss_dssp EEEEE------SSSSSSTTGGGSEE-TTEEHHHHHHHHHHHT
T ss_pred EEEec-----CCCCCCCCcchhhHh-CCccHHHHHHHHHHhC
Confidence 45555 555543 3 677888 9999999999999864
No 108
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=58.96 E-value=27 Score=34.08 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=45.2
Q ss_pred CeEEEEEcCCCCCcCCCCC--CccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCC-ChhHHHHHHHHhC
Q 013550 79 KLVVLKLNGGLGTTMGCTG--PKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFN-THDDTSKIIEKYS 151 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~--PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~-T~e~T~~~l~~~~ 151 (441)
++++|+=| |||++. =|.++|+ .+++.++++++++++.. ..=.++|-||.. +++..+++..++.
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL-~~~pmI~~~lervrks~----~~d~ivvATS~~~~d~~l~~~~~~~G 68 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPL-GGEPMIEYQLERVRKSK----DLDKIVVATSDKEEDDALEEVCRSHG 68 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhc-CCCchHHHHHHHHhccc----cccceEEEecCCcchhHHHHHHHHcC
Confidence 45566554 677654 3778999 99999999999998754 223689999986 5556666666664
No 109
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=47.56 E-value=29 Score=32.59 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=33.3
Q ss_pred eceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCee-ccceecC
Q 013550 391 LDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVL-ENKEING 437 (441)
Q Consensus 391 ~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l-~~~~~~~ 437 (441)
..+=+|-|||.+|+++.+==-++|+++. ++|.|-.+|-+ +|.++++
T Consensus 21 a~~A~viGdV~Ig~~vsIw~~aVlRgD~-~~I~IG~~tNIQDg~ViH~ 67 (176)
T COG0663 21 APSATVIGDVRIGAGVSIWPGAVLRGDV-EPIRIGARTNIQDGVVIHA 67 (176)
T ss_pred CCCCEEEEeEEECCCCEECCceEEEccC-CceEECCCceecCCeEEec
Confidence 4677899999999999887555577766 77777777766 4455543
No 110
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=40.80 E-value=38 Score=31.98 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=12.9
Q ss_pred EEeeeeEECcceEEEEEEEEEc
Q 013550 395 KVTGDVWFGANITLKGKVTIAA 416 (441)
Q Consensus 395 ~v~Gdv~fg~~v~l~G~v~i~a 416 (441)
+|.|+|++|+++.+--.++|.+
T Consensus 22 ~I~G~V~IG~~~~I~~~a~I~g 43 (192)
T TIGR02287 22 VLIGDVILGKRCYVGPLASLRG 43 (192)
T ss_pred EEEeeEEECCCCEECCCcEEEc
Confidence 4666777766666654444443
No 111
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=38.98 E-value=1.3e+02 Score=31.79 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=53.3
Q ss_pred ChHHHHHHCCCcEEEEEcCCc-ccccccHHHHHHHHHcCCcceEEEeee-ccCCccceEEEE-eCCee-EEEEeec----
Q 013550 203 GKLDALISQGKEYVFAANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPK-TLADVKGGTLIS-YEGKV-QLLEIAQ---- 274 (441)
Q Consensus 203 gll~~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~~~vv~k-~~~dekgGvl~~-~~g~~-~lvEysq---- 274 (441)
.+..++...+..-++|.+.|= |... +...+-|- +.++..-..+- ..-...-||.+. .+|.. .-.||.+
T Consensus 43 ~~~~~~~~~~ppGv~V~s~D~vl~~~-~~~~~~~~---~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~ 118 (414)
T PF07959_consen 43 AMYIDFPPGMPPGVLVCSGDMVLSVP-DDPLIDWD---EPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDF 118 (414)
T ss_pred HHHHHHHhhhhcceEEEecccccccC-ccccCCCC---CCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHh
Confidence 455666666666789999994 3333 33333222 24443332222 112334577766 33322 1233333
Q ss_pred --CCh-hhhhhhc--cCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 275 --VPD-EHVNEFK--SIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 275 --~~~-~~~~~~~--~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
=|. +.+.+.. ...+.-..-++.++|+-++.++++..
T Consensus 119 L~KpS~eem~~~~av~~~~~~~ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 119 LQKPSEEEMRASGAVLPDGNVLLDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred hcCCCHHHHHhCCcccCCCcccccccceeccHHHHHHHHHh
Confidence 233 3332111 11223334888999999999888864
No 112
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=38.44 E-value=1.4e+02 Score=30.25 Aligned_cols=69 Identities=22% Similarity=0.222 Sum_probs=46.4
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
+=.+.+|-||-.-+..++ .-..+-++++|..+.+.+| ..|+|-||-.|-+++.+.|++.......+.
T Consensus 146 ~p~~avLIGG~s~~~~~~-----------~~~~~~l~~~l~~~~~~~~--~~~~vttSRRTp~~~~~~L~~~~~~~~~~~ 212 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWD-----------EEDAERLLDQLAALAAAYG--GSLLVTTSRRTPPEAEAALRELLKDNPGVY 212 (311)
T ss_pred CCeEEEEECcCCCCcccC-----------HHHHHHHHHHHHHHHHhCC--CeEEEEcCCCCcHHHHHHHHHhhcCCCceE
Confidence 444455558855554443 1233466777777777776 789999999999999999998764333443
Q ss_pred EE
Q 013550 159 TF 160 (441)
Q Consensus 159 ~f 160 (441)
+|
T Consensus 213 ~~ 214 (311)
T PF06258_consen 213 IW 214 (311)
T ss_pred Ee
Confidence 43
No 113
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=37.77 E-value=52 Score=29.26 Aligned_cols=16 Identities=6% Similarity=0.285 Sum_probs=7.0
Q ss_pred eEECcceEEEEEEEEE
Q 013550 400 VWFGANITLKGKVTIA 415 (441)
Q Consensus 400 v~fg~~v~l~G~v~i~ 415 (441)
+++|+++.+...++|.
T Consensus 39 ~~IG~~~~I~~~~~I~ 54 (153)
T cd04645 39 IRIGERTNIQDGSVLH 54 (153)
T ss_pred eEECCCCEECCCcEEe
Confidence 3444444444433343
No 114
>PLN02472 uncharacterized protein
Probab=37.12 E-value=38 Score=33.36 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=20.6
Q ss_pred eEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCee
Q 013550 393 SLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVL 430 (441)
Q Consensus 393 ~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l 430 (441)
+-+|.|+|+.|.++.+...++|.++.+ +|.|-+++.+
T Consensus 71 ~a~i~G~V~Ig~~a~I~~gavirgd~~-~I~IG~~t~I 107 (246)
T PLN02472 71 NVVLAGQVTVWDGASVWNGAVLRGDLN-KITVGFCSNV 107 (246)
T ss_pred CCEEecCEEECCCCEEcCCCEEecCCc-ceEECCCCEE
Confidence 345666777766666665555554433 4455554444
No 115
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=36.13 E-value=46 Score=25.03 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=7.8
Q ss_pred eeeEECcceEEEEEEEEE
Q 013550 398 GDVWFGANITLKGKVTIA 415 (441)
Q Consensus 398 Gdv~fg~~v~l~G~v~i~ 415 (441)
+.+++|+++.+-..+.|.
T Consensus 17 ~~~~Ig~~~~I~~~~~i~ 34 (78)
T cd00208 17 GPVVIGDNVNIGPGAVIG 34 (78)
T ss_pred CcEEECCCCEECCCCEEE
Confidence 344444444444433333
No 116
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.95 E-value=2.1e+02 Score=27.27 Aligned_cols=98 Identities=11% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCCchHHHHHHHHHHHhhhh-CCCcCEEEeeCCC-ChhHHHHHHHHhCCCCCceEEEeeccceeeecCCCcccCCCCCCC
Q 013550 106 NGLTFLDLIVIQIENLNAKY-GCNVPLLLMNSFN-THDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTD 183 (441)
Q Consensus 106 ~gktfLdl~~~qi~~l~~~~-g~~iPl~IMtS~~-T~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~ 183 (441)
.+-+..+-.++.|.+|+.-+ ...||.+--.-.. -.++-+..|++.=+.+.+-.--.| -
T Consensus 48 ~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTaqp~~qs~~draLL~d~WGpgl~~~p~~~--------------------~ 107 (218)
T COG1535 48 ENCPLMEQLIANIAKLRIWCKQAGIPVVYTAQPGEQSPEDRALLKDFWGPGLTASPEQQ--------------------K 107 (218)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHHHHHHHHhcCCCCCCChhhh--------------------h
Confidence 34446677788888887433 2457887766665 444556677764332211000001 1
Q ss_pred ccccCcCCCccc------chhhhhcChHHHHHHCCCcEEEEEcCCc
Q 013550 184 KDGWYPPGHGDV------FPSLMNSGKLDALISQGKEYVFAANSDN 223 (441)
Q Consensus 184 ~~~~~P~GhGdi------~~aL~~sgll~~l~~~G~eyi~v~nvDN 223 (441)
.++..-||-+|+ |.|+++|.+++.|.+.|+.-+.+..|=-
T Consensus 108 vv~~l~P~~~D~vL~kwrYsAF~~s~Llq~lr~~grdQLIItGVya 153 (218)
T COG1535 108 VVDELAPGADDTVLTKWRYSAFHRSPLLQMLREKGRDQLIITGVYA 153 (218)
T ss_pred hHHhcCCCCCceEEeeeehhhhhcChHHHHHHHcCCCcEEEeehhh
Confidence 112233344443 8999999999999999999888887755
No 117
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=35.68 E-value=98 Score=23.78 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=42.4
Q ss_pred HHHHHHHhhhhCCC--cCEEEeeCCCChhHHHHHHHHhCCCCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCC
Q 013550 115 VIQIENLNAKYGCN--VPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGH 192 (441)
Q Consensus 115 ~~qi~~l~~~~g~~--iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~Gh 192 (441)
+++++.+-++.+.. .+++-.+.....+...+++.+..+ +..+|.+..+|. +-|+
T Consensus 12 C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g---------~~~vP~v~i~g~---------------~igg 67 (84)
T TIGR02180 12 CKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITG---------QRTVPNIFINGK---------------FIGG 67 (84)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhC---------CCCCCeEEECCE---------------EEcC
Confidence 34444433444444 456666666667777888876533 345666644432 2356
Q ss_pred cccchhhhhcChHHHH
Q 013550 193 GDVFPSLMNSGKLDAL 208 (441)
Q Consensus 193 Gdi~~aL~~sgll~~l 208 (441)
-+-..+|+++|-|..+
T Consensus 68 ~~~~~~~~~~g~l~~~ 83 (84)
T TIGR02180 68 CSDLLALYKSGKLAEL 83 (84)
T ss_pred HHHHHHHHHcCChhhh
Confidence 6777888888888765
No 118
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=35.35 E-value=48 Score=31.33 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=21.7
Q ss_pred ceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCee
Q 013550 392 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVL 430 (441)
Q Consensus 392 ~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l 430 (441)
.+-+|.|+|.+|+++.+--.++|.++.|. +.|-+++.+
T Consensus 21 ~~a~I~g~V~IG~~~~I~~~avIrgd~~~-i~Ig~~~~I 58 (196)
T PRK13627 21 PSAVLIGDVIVGAGVYIGPLASLRGDYGR-LIVQAGANL 58 (196)
T ss_pred CCCEEECceEECCCCEECCCCEEecCCcc-EEECCCCEE
Confidence 44556777777777777655556554432 444444333
No 119
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=35.10 E-value=48 Score=27.44 Aligned_cols=15 Identities=20% Similarity=0.598 Sum_probs=6.0
Q ss_pred EeeeeEECcceEEEE
Q 013550 396 VTGDVWFGANITLKG 410 (441)
Q Consensus 396 v~Gdv~fg~~v~l~G 410 (441)
++||+.+..++.++|
T Consensus 11 i~G~i~~~~~v~i~G 25 (101)
T PF04519_consen 11 IEGDISSDGDVRIDG 25 (101)
T ss_pred EEEEEEECcEEEEEE
Confidence 344444433443333
No 120
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=30.37 E-value=70 Score=28.55 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=5.0
Q ss_pred eeeeEECcceEE
Q 013550 397 TGDVWFGANITL 408 (441)
Q Consensus 397 ~Gdv~fg~~v~l 408 (441)
.|+|++|+++.+
T Consensus 16 ~g~v~IG~~~~I 27 (155)
T cd04745 16 IGDVIIGKNCYI 27 (155)
T ss_pred EccEEECCCCEE
Confidence 344444444444
No 121
>PHA03050 glutaredoxin; Provisional
Probab=28.94 E-value=1.8e+02 Score=24.75 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHhCCCCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC
Q 013550 139 THDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ 211 (441)
Q Consensus 139 T~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~ 211 (441)
...++++.|++..+ |..+|.+..+|..+ |..|-..+|+++|-|+.+++.
T Consensus 53 ~~~~~~~~l~~~tG---------~~tVP~IfI~g~~i---------------GG~ddl~~l~~~g~L~~~l~~ 101 (108)
T PHA03050 53 PENELRDYFEQITG---------GRTVPRIFFGKTSI---------------GGYSDLLEIDNMDALGDILSS 101 (108)
T ss_pred CCHHHHHHHHHHcC---------CCCcCEEEECCEEE---------------eChHHHHHHHHcCCHHHHHHH
Confidence 34567788877654 34677776655422 556667789999999988875
No 122
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=28.08 E-value=1e+02 Score=32.30 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=72.7
Q ss_pred CCCCccceee----CCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEEeeccceeeec
Q 013550 95 CTGPKSVIEV----RNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCA 170 (441)
Q Consensus 95 ~~~PK~~l~v----~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~ 170 (441)
.||||-+-.- ++|+.-++-+++-|..|++ ++..+-..+++...+-+...+++...........-| .|.+..
T Consensus 121 iDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~-~~v~~~~~~vv~~~n~~~~~ei~~~l~~~g~~~i~f----ip~~~~ 195 (378)
T COG0641 121 IDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQA-HGVDFNTLTVVNRQNVLHPEEIYHFLKSEGSKFIQF----IPLVES 195 (378)
T ss_pred ccCchHhccccccCCCCCccHHHHHHHHHHHHH-cCCcEEEEEEEchhHhhCHHHHHHHHHHcccceEEE----EecccC
Confidence 6999988653 6899999999999999986 666555666666665555555555432222332223 677654
Q ss_pred CCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCccc
Q 013550 171 DDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLG 225 (441)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~ 225 (441)
.+... +. ..-...|-+-|.... -+++.|...+..-+++.+.|++.
T Consensus 196 ~~~~~-~~----~~~~~~~~~~~~fl~-----~~~~~~~~~~~~~i~i~~f~~~~ 240 (378)
T COG0641 196 DNRGD-SL----LEFSVTAEEYGQFLI-----AIFDEWVRHDVGRIFIQNFDQLL 240 (378)
T ss_pred CCCCc-cc----cccccCHHHHHHHHH-----HHHHHHHHhcCCeeeehhHHHHH
Confidence 43321 00 111224455555443 35888988888889998888743
No 123
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=26.78 E-value=86 Score=28.46 Aligned_cols=42 Identities=12% Similarity=0.339 Sum_probs=24.9
Q ss_pred ceEEEeeeeEECcceEEEEEEE--EEcCCCCeeecCCCCeecccee
Q 013550 392 DSLKVTGDVWFGANITLKGKVT--IAAKSGEKLEIPDGAVLENKEI 435 (441)
Q Consensus 392 ~~L~v~Gdv~fg~~v~l~G~v~--i~a~~~~~~~ip~g~~l~~~~~ 435 (441)
.-++++|++.|-..+.|+|++. |.++.+ ++|.....+++.+.
T Consensus 28 ~g~~f~G~l~f~~~l~IdG~~~G~v~s~~~--iiv~~~g~V~gei~ 71 (146)
T COG1664 28 AGTTFKGELVFEGPLRIDGTFEGDVHSDGG--IVVGESGRVEGEIE 71 (146)
T ss_pred cCCEEEEEEEecceEEEeEEEEEEEEeCCC--EEECCccEEEEEEE
Confidence 3345777777777777777542 333333 66766666666543
No 124
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=25.83 E-value=94 Score=28.24 Aligned_cols=11 Identities=45% Similarity=0.987 Sum_probs=5.4
Q ss_pred eeEECcceEEE
Q 013550 399 DVWFGANITLK 409 (441)
Q Consensus 399 dv~fg~~v~l~ 409 (441)
|||+|.++++-
T Consensus 130 ~vwIG~~a~Il 140 (190)
T COG0110 130 DVWIGAGAVIL 140 (190)
T ss_pred CeEEcCccEEC
Confidence 55555554443
No 125
>PRK10063 putative glycosyl transferase; Provisional
Probab=25.64 E-value=5.7e+02 Score=24.56 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=32.8
Q ss_pred eeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhC
Q 013550 103 EVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS 151 (441)
Q Consensus 103 ~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~ 151 (441)
|..+...+|.-.++.+..+.+.++.++.++|.....|+ .|.+.++++.
T Consensus 8 ~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD-~t~~i~~~~~ 55 (248)
T PRK10063 8 VAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSND-GTREFLENLN 55 (248)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcc-cHHHHHHHhc
Confidence 44455556777777777654445556788888887765 4788888764
No 126
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=24.88 E-value=1e+02 Score=27.99 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=9.0
Q ss_pred EeeeeEECcceEEEEEEEEE
Q 013550 396 VTGDVWFGANITLKGKVTIA 415 (441)
Q Consensus 396 v~Gdv~fg~~v~l~G~v~i~ 415 (441)
+.|++++|+++.+.-.+.|.
T Consensus 14 i~g~v~IG~~~~I~~~a~I~ 33 (164)
T cd04646 14 IRGDVTIGPGTVVHPRATII 33 (164)
T ss_pred EcCceEECCCCEEcCCeEEe
Confidence 34444554444444444343
No 127
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=24.86 E-value=94 Score=24.31 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=24.6
Q ss_pred EeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeeccceecCCCC
Q 013550 396 VTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGD 440 (441)
Q Consensus 396 v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~~~~~~~~~~ 440 (441)
|..++++|.+..|.+.++- ....|.+++.+.++++-.+.+
T Consensus 36 i~~~~~ig~~~~l~~svi~-----~~~~i~~~~~v~~~ii~~~~~ 75 (81)
T cd04652 36 IMDNVTIEDGCTLENCIIG-----NGAVIGEKCKLKDCLVGSGYR 75 (81)
T ss_pred EeCCCEECCCCEEeccEEe-----CCCEECCCCEEccCEECCCcE
Confidence 3335666777777654432 234577888888877765543
No 128
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=24.03 E-value=68 Score=25.06 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=3.7
Q ss_pred cCCCCeecc
Q 013550 424 IPDGAVLEN 432 (441)
Q Consensus 424 ip~g~~l~~ 432 (441)
|.+++.+.+
T Consensus 43 i~~~~~i~~ 51 (80)
T cd05824 43 VRDHSWVKS 51 (80)
T ss_pred ECCCCEEeC
Confidence 334444443
No 129
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=23.40 E-value=80 Score=28.29 Aligned_cols=6 Identities=17% Similarity=0.667 Sum_probs=2.2
Q ss_pred CcceEE
Q 013550 403 GANITL 408 (441)
Q Consensus 403 g~~v~l 408 (441)
|.+..|
T Consensus 63 ~~~~~i 68 (163)
T cd05636 63 GNSVEV 68 (163)
T ss_pred CCCcEE
Confidence 333333
No 130
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=23.20 E-value=1e+02 Score=25.38 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=14.8
Q ss_pred eeeeEECcceEEEEEEEEEcC-CCCeeecCCCCeecc
Q 013550 397 TGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVLEN 432 (441)
Q Consensus 397 ~Gdv~fg~~v~l~G~v~i~a~-~~~~~~ip~g~~l~~ 432 (441)
+|++.....+.|.++..|.++ ....+.|-+|+.+++
T Consensus 61 ~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G 97 (101)
T PF04519_consen 61 DGNVEASGKVEIYGTARVEGDITAGKLEVEGGASING 97 (101)
T ss_pred eEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEE
Confidence 334444344444444433322 122355555555444
No 131
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=23.08 E-value=89 Score=34.89 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=53.3
Q ss_pred CCeEEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhCC
Q 013550 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSK 152 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~~ 152 (441)
..+.+|+||----||.. .+.|+.++|+ .+-+.+|+.++.+.+.+ |- .++.+|. ...++.+|+++-.+
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPl-aNVpmIdYtL~~L~~ag------V~eVfvfc~~-~~~qi~e~i~~sew 93 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPL-ANVPMIDYTLEWLERAG------VEEVFVFCSA-HAAQIIEYIEKSEW 93 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeee-cCchHHHHHHHHHHhcC------ceEEEEEecc-cHHHHHHHHhhccc
Confidence 57889999999999986 4899999999 88999999999998865 44 4444443 45678899988554
No 132
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=22.81 E-value=1.4e+02 Score=26.99 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=13.0
Q ss_pred eEECcceEEEEEEEEEcCCCCeeecCCCCee
Q 013550 400 VWFGANITLKGKVTIAAKSGEKLEIPDGAVL 430 (441)
Q Consensus 400 v~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l 430 (441)
+++|+++.+.-.++|.+..+..+.|.+++.+
T Consensus 43 v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I 73 (167)
T cd00710 43 IIIGANVNIQDGVVIHALEGYSVWIGKNVSI 73 (167)
T ss_pred EEECCCCEECCCeEEEecCCCCEEECCCceE
Confidence 3444444444444443333334444444443
No 133
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=22.21 E-value=5.8e+02 Score=22.98 Aligned_cols=46 Identities=11% Similarity=0.233 Sum_probs=26.8
Q ss_pred eeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHh
Q 013550 102 IEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (441)
Q Consensus 102 l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~ 150 (441)
+|+.+....|.-.++.+.... ++....++|.....|+ .|.++++++
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~--~~~~~eiiiVDd~S~d-~t~~~~~~~ 48 (224)
T cd06442 3 IPTYNERENIPELIERLDAAL--KGIDYEIIVVDDNSPD-GTAEIVREL 48 (224)
T ss_pred EeccchhhhHHHHHHHHHHhh--cCCCeEEEEEeCCCCC-ChHHHHHHH
Confidence 444444445555555555432 3456889999877664 455565554
No 134
>PF13054 DUF3915: Protein of unknown function (DUF3915)
Probab=21.55 E-value=36 Score=28.87 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.0
Q ss_pred eeeceEEEeeeeEECcceEEEEE
Q 013550 389 IELDSLKVTGDVWFGANITLKGK 411 (441)
Q Consensus 389 ~~~~~L~v~Gdv~fg~~v~l~G~ 411 (441)
.+++-|+++|+.+| +||+..|-
T Consensus 50 TeiSLLsikgngtF-~nviFeGF 71 (116)
T PF13054_consen 50 TEISLLSIKGNGTF-NNVIFEGF 71 (116)
T ss_pred ceEEEEEEecCccc-hhhhhhhh
Confidence 37789999999999 89988874
No 135
>PRK10824 glutaredoxin-4; Provisional
Probab=21.44 E-value=3.3e+02 Score=23.62 Aligned_cols=47 Identities=26% Similarity=0.464 Sum_probs=34.0
Q ss_pred hHHHHHHHHhCCCCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC
Q 013550 141 DDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ 211 (441)
Q Consensus 141 e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~ 211 (441)
.+.++.|+++.+ +..+|.+.-+|... |..|...+|+++|-|+++++.
T Consensus 56 ~~~~~~l~~~sg---------~~TVPQIFI~G~~I---------------GG~ddl~~l~~~G~L~~lL~~ 102 (115)
T PRK10824 56 PDIRAELPKYAN---------WPTFPQLWVDGELV---------------GGCDIVIEMYQRGELQQLIKE 102 (115)
T ss_pred HHHHHHHHHHhC---------CCCCCeEEECCEEE---------------cChHHHHHHHHCCCHHHHHHH
Confidence 567888887754 35677776665433 666778899999999998853
No 136
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=21.07 E-value=1.1e+02 Score=24.06 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=14.7
Q ss_pred eEEEEEEEEEcCCCCeeecCCCC
Q 013550 406 ITLKGKVTIAAKSGEKLEIPDGA 428 (441)
Q Consensus 406 v~l~G~v~i~a~~~~~~~ip~g~ 428 (441)
.+|.|.|+|....|++.++..|.
T Consensus 30 ~vleG~v~it~~~G~~~~~~aGD 52 (74)
T PF05899_consen 30 YVLEGEVTITDEDGETVTFKAGD 52 (74)
T ss_dssp EEEEEEEEEEETTTEEEEEETTE
T ss_pred EEEEeEEEEEECCCCEEEEcCCc
Confidence 56777777776666665555544
No 137
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=21.00 E-value=3.3e+02 Score=22.51 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=15.5
Q ss_pred CCcccchhhhhcChHHHHHHC
Q 013550 191 GHGDVFPSLMNSGKLDALISQ 211 (441)
Q Consensus 191 GhGdi~~aL~~sgll~~l~~~ 211 (441)
|.-|-..+|+++|-|+++++.
T Consensus 73 GG~ddl~~l~~~G~L~~~l~~ 93 (99)
T TIGR02189 73 GGLENVMALHISGSLVPMLKQ 93 (99)
T ss_pred cCHHHHHHHHHcCCHHHHHHH
Confidence 444556788999999888753
No 138
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.14 E-value=39 Score=34.96 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=18.5
Q ss_pred HHHHHHHhhhhC------CCcCEEEeeCCCChh
Q 013550 115 VIQIENLNAKYG------CNVPLLLMNSFNTHD 141 (441)
Q Consensus 115 ~~qi~~l~~~~g------~~iPl~IMtS~~T~e 141 (441)
++.+..++++.- ..-||++|++|.++.
T Consensus 115 ardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~ 147 (405)
T KOG2963|consen 115 ARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSG 147 (405)
T ss_pred HHHHHHHHhCCCCchhhccCCCEEEEccCCCCc
Confidence 455555554321 457999999999886
No 139
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=20.13 E-value=4.7e+02 Score=21.03 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=26.8
Q ss_pred eeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHh
Q 013550 102 IEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (441)
Q Consensus 102 l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~ 150 (441)
+++.....+++..++.+..... ....++|++...+++ +.+.+.+.
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~---~~~~i~i~~~~~~~~-~~~~~~~~ 47 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTY---PNFEVIVVDDGSTDG-TLEILEEY 47 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCc---cceEEEEEeCCCCcc-HHHHHHHH
Confidence 3444455666666666665431 346788888887654 55555544
Done!