Query 013550
Match_columns 441
No_of_seqs 244 out of 800
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r3i_A UTP--glucose-1-phosphat 100.0 2E-118 8E-123 938.0 28.7 436 5-441 53-525 (528)
2 3gue_A UTP-glucose-1-phosphate 100.0 8E-111 3E-115 875.5 38.1 409 21-437 24-483 (484)
3 2icy_A Probable UTP-glucose-1- 100.0 8E-103 3E-107 820.0 40.8 437 5-441 5-469 (469)
4 2i5k_A UTP--glucose-1-phosphat 100.0 5.8E-96 2E-100 771.7 32.8 432 5-441 17-485 (488)
5 2oeg_A UTP-glucose-1-phosphate 100.0 2E-95 7E-100 767.9 35.7 420 8-437 12-488 (505)
6 3ogz_A UDP-sugar pyrophosphory 100.0 5.5E-83 1.9E-87 679.8 26.6 417 5-433 38-571 (630)
7 3oc9_A UDP-N-acetylglucosamine 100.0 8.7E-71 3E-75 565.3 23.0 306 68-381 22-396 (405)
8 2yqc_A UDP-N-acetylglucosamine 100.0 8.6E-69 3E-73 565.0 23.4 356 5-371 30-464 (486)
9 1jv1_A Glcnac1P uridyltransfer 100.0 2E-66 6.9E-71 549.0 29.0 377 5-391 27-494 (505)
10 3st8_A Bifunctional protein GL 99.6 2.1E-14 7.2E-19 151.2 17.1 189 78-310 11-204 (501)
11 1yp2_A Glucose-1-phosphate ade 99.2 5.5E-10 1.9E-14 115.4 22.1 207 78-310 19-246 (451)
12 3oam_A 3-deoxy-manno-octuloson 99.2 1.2E-10 4.1E-15 111.9 13.9 184 79-310 2-198 (252)
13 4ecm_A Glucose-1-phosphate thy 99.1 1.1E-09 3.7E-14 105.9 15.7 180 78-306 23-205 (269)
14 3brk_X Glucose-1-phosphate ade 99.1 1.4E-09 4.8E-14 111.6 17.3 203 77-310 10-222 (420)
15 3juk_A UDP-glucose pyrophospho 99.1 1.9E-09 6.6E-14 104.4 15.4 195 80-306 3-216 (281)
16 4fce_A Bifunctional protein GL 99.0 1.6E-08 5.5E-13 104.1 18.2 178 79-310 8-189 (459)
17 3pnn_A Conserved domain protei 99.0 1.2E-08 4.1E-13 100.6 15.9 205 79-308 5-229 (303)
18 3k8d_A 3-deoxy-manno-octuloson 98.9 1.3E-08 4.4E-13 99.0 15.0 184 79-309 18-213 (264)
19 2v0h_A Bifunctional protein GL 98.9 1.7E-08 6E-13 103.7 16.2 179 79-310 5-186 (456)
20 1fxo_A Glucose-1-phosphate thy 98.9 2.1E-08 7.2E-13 98.6 15.5 179 79-308 2-187 (293)
21 1mc3_A Glucose-1-phosphate thy 98.8 3.1E-08 1E-12 97.7 14.5 179 80-307 4-187 (296)
22 1lvw_A Glucose-1-phosphate thy 98.8 5.4E-08 1.8E-12 95.9 15.7 178 80-308 4-188 (295)
23 1tzf_A Glucose-1-phosphate cyt 98.8 1.8E-08 6E-13 95.9 11.8 189 80-304 3-199 (259)
24 2qh5_A PMI, ALGA, mannose-6-ph 98.8 3.8E-08 1.3E-12 97.1 13.7 189 79-310 4-204 (308)
25 3tqd_A 3-deoxy-manno-octuloson 98.8 9.9E-08 3.4E-12 92.3 15.8 184 79-309 9-206 (256)
26 1hm9_A GLMU, UDP-N-acetylgluco 98.8 3.9E-08 1.3E-12 101.6 13.1 181 80-310 12-195 (468)
27 2e3d_A UTP--glucose-1-phosphat 98.7 8.7E-08 3E-12 93.8 13.7 199 79-306 8-227 (302)
28 1vic_A 3-deoxy-manno-octuloson 98.7 3.3E-07 1.1E-11 87.8 16.2 182 79-308 2-200 (262)
29 1h7e_A 3-deoxy-manno-octuloson 98.7 2.6E-07 9E-12 87.1 15.1 176 79-308 2-187 (245)
30 2y6p_A 3-deoxy-manno-octuloson 98.7 4.6E-07 1.6E-11 84.7 15.3 174 79-309 2-182 (234)
31 4evw_A Nucleoside-diphosphate- 98.6 2.3E-08 7.8E-13 96.3 6.2 169 82-302 2-180 (255)
32 2ux8_A Glucose-1-phosphate uri 98.6 5.8E-08 2E-12 94.9 8.4 184 78-307 13-226 (297)
33 2pa4_A UTP-glucose-1-phosphate 98.6 1.6E-07 5.6E-12 93.1 10.3 183 80-307 13-228 (323)
34 2x65_A Mannose-1-phosphate gua 98.6 5.5E-07 1.9E-11 90.3 13.8 190 80-310 2-206 (336)
35 4fcu_A 3-deoxy-manno-octuloson 98.5 1.2E-06 4.1E-11 84.5 14.7 181 80-309 2-198 (253)
36 1jyk_A LICC protein, CTP:phosp 98.5 3.4E-07 1.2E-11 87.8 8.9 65 79-150 25-92 (254)
37 1ezi_A CMP-N-acetylneuraminic 98.5 2.6E-06 8.8E-11 79.5 14.5 184 79-307 4-189 (228)
38 2ggo_A 401AA long hypothetical 98.4 6.6E-06 2.3E-10 83.1 16.5 166 81-307 2-171 (401)
39 2waw_A MOBA relate protein; un 98.3 2.9E-06 9.9E-11 76.8 11.5 60 79-147 5-64 (199)
40 3rsb_A Adenosylcobinamide-phos 98.3 1.8E-06 6.2E-11 78.6 8.6 62 81-150 2-63 (196)
41 3f1c_A Putative 2-C-methyl-D-e 98.3 3.8E-06 1.3E-10 79.8 11.1 68 79-151 3-71 (246)
42 1qwj_A Cytidine monophospho-N- 98.3 1.2E-05 4E-10 75.5 14.1 130 79-250 3-134 (229)
43 1vgw_A 4-diphosphocytidyl-2C-m 98.3 4.8E-06 1.6E-10 77.5 11.0 66 78-150 5-70 (231)
44 2vsh_A TARI, 2-C-methyl-D-eryt 98.2 3.7E-06 1.3E-10 78.3 9.7 66 80-150 3-69 (236)
45 2wee_A MOBA-related protein; u 98.2 3.6E-06 1.2E-10 76.2 9.3 60 79-147 5-64 (197)
46 2xwl_A 2-C-methyl-D-erythritol 98.2 4.8E-06 1.6E-10 76.9 9.3 55 79-138 2-56 (223)
47 2cu2_A Putative mannose-1-phos 98.2 4E-06 1.4E-10 84.0 9.3 188 80-310 3-203 (337)
48 3q80_A 2-C-methyl-D-erythritol 98.2 1.2E-05 4.1E-10 76.4 12.1 64 78-147 6-70 (231)
49 3d5n_A Q97W15_sulso; NESG, SSR 98.1 4.7E-06 1.6E-10 76.6 6.5 49 79-138 2-50 (197)
50 1i52_A 4-diphosphocytidyl-2-C- 98.0 3.5E-06 1.2E-10 79.0 5.1 55 78-137 6-60 (236)
51 2xme_A CTP-inositol-1-phosphat 98.0 5.5E-05 1.9E-09 70.7 13.1 62 77-148 16-77 (232)
52 1e5k_A Molybdopterin-guanine d 97.9 6.9E-05 2.4E-09 69.0 11.8 52 79-138 6-57 (201)
53 2dpw_A Hypothetical protein TT 97.9 1.2E-05 4E-10 75.7 6.6 49 79-135 2-53 (232)
54 3ngw_A Molybdopterin-guanine d 97.9 2.9E-05 1E-09 72.4 9.3 46 80-136 1-46 (208)
55 2yc3_A 2-C-methyl-D-erythritol 97.9 8.6E-06 3E-10 75.7 5.0 42 79-121 4-45 (228)
56 2e8b_A Probable molybdopterin- 97.6 3E-05 1E-09 71.3 4.0 52 78-138 13-64 (201)
57 1vpa_A 2-C-methyl-D-erythritol 97.6 3.5E-05 1.2E-09 71.8 4.2 43 78-121 12-54 (234)
58 2px7_A 2-C-methyl-D-erythritol 97.4 6.9E-05 2.4E-09 70.6 4.0 37 79-117 25-61 (236)
59 1w55_A ISPD/ISPF bifunctional 97.1 0.00039 1.3E-08 70.6 5.5 53 79-136 3-55 (371)
60 2o8m_C Protease; NS3, NS4A, vi 38.1 27 0.00092 21.6 2.7 23 405-430 4-26 (26)
61 3kwd_A Carbon dioxide concentr 35.1 21 0.00072 32.1 2.9 36 395-430 53-88 (213)
62 3tv0_A Dynactin subunit 6; LEF 34.7 20 0.00068 31.8 2.6 39 392-431 23-61 (194)
63 3h8q_A Thioredoxin reductase 3 31.5 76 0.0026 25.3 5.5 48 140-211 55-102 (114)
64 1qre_A Carbonic anhydrase; bet 27.8 32 0.0011 31.8 2.9 38 394-431 72-109 (247)
65 2wul_A Glutaredoxin related pr 26.9 75 0.0026 26.4 4.7 52 139-214 60-112 (118)
66 3gx8_A Monothiol glutaredoxin- 25.9 78 0.0027 25.9 4.6 56 131-211 51-106 (121)
67 3ixc_A Hexapeptide transferase 23.4 29 0.00098 30.7 1.5 11 399-409 78-88 (191)
68 3l4n_A Monothiol glutaredoxin- 22.0 1.1E+02 0.0039 25.3 5.0 59 139-221 54-113 (127)
69 2pig_A Putative transferase; S 20.0 38 0.0013 33.3 1.8 20 395-414 67-86 (334)
No 1
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=2.3e-118 Score=938.02 Aligned_cols=436 Identities=52% Similarity=0.888 Sum_probs=396.3
Q ss_pred HHHHHHHHHHh-hhhcccCHhHHHHHHHHHHHHhccCCCCccCCccccCCCCCcccCCCCCCCCCChhhHHhhcCCeEEE
Q 013550 5 AEKLTQLKSAV-AGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVL 83 (441)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~l~~~~~~~~~g~~~l~kvavv 83 (441)
+++|.+|.+++ +..++....+++.|.++|+||+++....++|++|+|+|++.+.+|++++.. +..+....+++|+|||
T Consensus 53 ~~~l~~~~~~l~~~~~~~~~~el~~f~~lf~r~l~~~~~~~~~~~i~p~p~~~~~~~~~l~~~-~~~~~~~~~l~kvavv 131 (528)
T 3r3i_A 53 KKELEKILTTASSHEFEHTKKDLDGFRKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIKAR-GLPDNISSVLNKLVVV 131 (528)
T ss_dssp TSSSTTTSSSCCTTTTHHHHHHHHHHHHHHHHHHHC-------CCCCCCCTTTSEEHHHHTTS-CCCCSSCTTCTTEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHCcCCCHHHccCHhhcCCc-cccchhhhhcCceEEE
Confidence 66777888888 556778889999999999999998877999999999999999999888642 2222356789999999
Q ss_pred EEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEEeec
Q 013550 84 KLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQS 163 (441)
Q Consensus 84 ~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~Q~ 163 (441)
+||||||||||+++||+++||++|+||||++++||++++++||+.|||+||||++||++|++||++|++|+.+|++|+|+
T Consensus 132 lLaGGlGTRLG~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~fg~~V~~F~Q~ 211 (528)
T 3r3i_A 132 KLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQS 211 (528)
T ss_dssp EECCCBCTTTTCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTTSSCCEEEEECC
T ss_pred EeCCCCccccCCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCccCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCcccCCCCC---CCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHHc-
Q 013550 164 QYPRLCADDFVPLPCKGK---TDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQN- 239 (441)
Q Consensus 164 ~~P~~~~~~~~~l~~~~~---~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~- 239 (441)
++||++.+|+++++++.+ +++++|+|+||||+|.||++||+|++|+++|+||+||+|+||+++.+||.+|||++++
T Consensus 212 ~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~Lg~~~~~~ 291 (528)
T 3r3i_A 212 RYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPP 291 (528)
T ss_dssp CBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHHHHHHHSSCS
T ss_pred CeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCHHHHHHHHhcc
Confidence 999999999999998432 4789999999999999999999999999999999999999998778899999999998
Q ss_pred ---CCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhcccCcc
Q 013550 240 ---KNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (441)
Q Consensus 240 ---~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~~~~lp 316 (441)
+++|+||||+|+.|+|+||++|+++|+++++||+|+|++++++|++..+|++||||||||++++|+++++...+.||
T Consensus 292 ~~~~~d~~~kVv~Kt~~dek~Gvl~~~dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp 371 (528)
T 3r3i_A 292 NGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDME 371 (528)
T ss_dssp SSCCCSEEEEECCCCTTCCSSCEEECSSSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCC
T ss_pred cccCCcEEEEEeEccccCCcccEEEEECCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred ccccccccC-CCCcceeehhhhhhH----------------------------hhhhhccccCeeEeccCcCCCCCCeEE
Q 013550 317 IIPNPKEVD-GIKVLQLETAAGAAI----------------------------RSDLYTLADGFVTRNEARKNPANPTIE 367 (441)
Q Consensus 317 ~~vn~K~i~-~~~~iqlEta~g~ai----------------------------~sDly~~~~~~l~~~~~r~~~~~P~i~ 367 (441)
+|+|+|++| +.+++|+||++|++| |||+|.++++.|+++|+|.++..|+|+
T Consensus 372 ~ivn~K~vd~~~~viqlEt~igd~i~~f~~~~~i~VpR~rF~PvKn~sdLll~~Sdly~l~~g~l~~~~~r~~~~~P~v~ 451 (528)
T 3r3i_A 372 IIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVK 451 (528)
T ss_dssp CEEEEECCSSSSCEEEEEBCSTTCSTTSSSCCCEECCGGGCCBCCSHHHHHHHHSTTSEEETTEEECCSSCSSCCCCEEE
T ss_pred ceecCcccCCCCCEEEeHHHHHHHHHhccCcEEEEEehHHcccccchHHHHHHhcceeEeeCCeEEecccccCCCCCEEE
Confidence 999999998 789999999999999 999999999999999999999999999
Q ss_pred eCCCccchhhHhhccCCCCceeeeceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeeccceecCCCCC
Q 013550 368 LGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 441 (441)
Q Consensus 368 L~~~f~~v~~~~~r~~~~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~~~~~~~~~~~ 441 (441)
|+++|++|++|++||+++|||++||||||+||||||+||+|+|+|+|+|++|++++||||++|||++|+|||||
T Consensus 452 L~~~~~~v~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~g~~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 452 LGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp ECTTSCSHHHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECCTTCEEECCTTCEEEEEEEC-----
T ss_pred eCcccCcHHHHHHhCCCCCCcccCCEEEEecceEECCCcEEEEEEEEEcCCCCceecCCCCEEeccEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=7.5e-111 Score=875.46 Aligned_cols=409 Identities=38% Similarity=0.614 Sum_probs=386.4
Q ss_pred cCHhHHHHHHHHHHHHhccCCCCccCCccccCCCCCcccCCCCCCCCCChhhHHhhcCCeEEEEEcCCCCCcCCCCCCcc
Q 013550 21 ISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVLKLNGGLGTTMGCTGPKS 100 (441)
Q Consensus 21 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~l~~~~~~~~~g~~~l~kvavv~LaGGlGTRLG~~~PK~ 100 (441)
..+.+++.|.++|++|++++++.|+|++|+|+. ++.+|++++.. . .|.++|+|+|||+||||||||||+++||+
T Consensus 24 ~~~~~~~~f~~~~~~~~~~~~~~i~~~~i~p~~--~~~~~~~l~~~---~-~G~~~L~kvavvlLaGGlGTRLG~~~pKg 97 (484)
T 3gue_A 24 VEEKCIHIFLIQHALVRKGETGYIPEKSISPVE--SLPFLQGIETK---G-ENTALLRQAVVLKLNGGLGTGMGLNGPKS 97 (484)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCCCGGGCEECC--CCCBHHHHCCS---S-CCHHHHTTEEEEEEECCCCGGGTCSSCGG
T ss_pred CCHHHHHHHHHHHHHHhcCCCCccCHhhCCChh--ccCChhhcCCc---h-HHHHHHhhcEEEEEcCCcccccCCCCCce
Confidence 778999999999999999999999999999987 67888888632 2 69999999999999999999999999999
Q ss_pred ceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCC---CCceEEEeeccceeeecCCCcccC
Q 013550 101 VIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS---NVEIHTFNQSQYPRLCADDFVPLP 177 (441)
Q Consensus 101 ~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~---~~~i~~f~Q~~~P~~~~~~~~~l~ 177 (441)
+++|++|+||||++++||++++++|++.|||+||||+.||++|++||++|++| +.+|++|+|+++||++.+|+.++.
T Consensus 98 ~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~ 177 (484)
T 3gue_A 98 LLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVT 177 (484)
T ss_dssp GSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETTTCCBCC
T ss_pred eeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCcccCCCccceEEEEeCceeeEecCCCceee
Confidence 99999999999999999999999999999999999999999999999998875 468999999999999999987765
Q ss_pred CCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHHcCCcceEEEeeeccCCccc
Q 013550 178 CKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKG 257 (441)
Q Consensus 178 ~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~dekg 257 (441)
++. +++++|+|+||||+|.||++||+|++|+++|+||+||+|+|||++++||.+||||++++++|+||||+|+.++++|
T Consensus 178 ~~~-~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~lG~~~~~~~d~~~kvv~Kt~~dekg 256 (484)
T 3gue_A 178 YEA-DPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRLLDYMHEKQLGFLMEVCRRTESDKKG 256 (484)
T ss_dssp CTT-CGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHHHHHHHHTTCSEEEEEEECCTTCCSS
T ss_pred cCC-CCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHHHHHHHhcCCCEEEEEEECCCCCCce
Confidence 542 3689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEe----------CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhc--ccCccccccccccC
Q 013550 258 GTLISY----------EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAD--ALKMEIIPNPKEVD 325 (441)
Q Consensus 258 Gvl~~~----------~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~--~~~lp~~vn~K~i~ 325 (441)
|++|++ +|+++++||+|+|++++++|++..+|++|||||+|+++++|++++++. .+.||+|+|+|+++
T Consensus 257 G~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~f~~~~g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id 336 (484)
T 3gue_A 257 GHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVN 336 (484)
T ss_dssp EEEEEEC--------CCCEEEEEEGGGSCGGGHHHHTCTTTSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESS
T ss_pred eEEEEEccccccccCCCCCEEEEEeccCCHHHHhhhcCCCCceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceec
Confidence 999998 999999999999999999999999999999999999999999999986 57899999999997
Q ss_pred -----CCCcceeehhhhhhH----------------------------hhhhhcccc-CeeEeccCcCCCCCCeEEeCCC
Q 013550 326 -----GIKVLQLETAAGAAI----------------------------RSDLYTLAD-GFVTRNEARKNPANPTIELGPE 371 (441)
Q Consensus 326 -----~~~~iqlEta~g~ai----------------------------~sDly~~~~-~~l~~~~~r~~~~~P~i~L~~~ 371 (441)
..+++||||+||++| |||+|.+++ +.++++|+| ++..|+|+|+|+
T Consensus 337 ~~k~~~~~~iqlE~~~~d~~~~~~~~~~ieV~R~rF~PvKn~sdLl~~~Sdly~l~~~~~l~~~~~~-~~~~P~v~L~~~ 415 (484)
T 3gue_A 337 PQDSQSTKVYQLEVAMGAAISLFDRSEAVVVPRERFAPVKTCSDLLALRSDAYQVTEDQRLVLCEER-NGKPPAIDLDGE 415 (484)
T ss_dssp TTCTTSCEEEEEECCGGGGGTTSSSEEEEECCGGGCCCCSSHHHHHHHHSTTEEECTTSCEEECGGG-TTCCCEEEECTT
T ss_pred CCCCCCCCEeehHHHHHHHHHhCCccEEEEEChhhccccccchHHHHHhhhceeccCCceEEecccc-CCCCCeEEECch
Confidence 357999999999999 999999999 499999999 457899999874
Q ss_pred -ccchhhHhhccCC-CCceeeeceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeeccceecC
Q 013550 372 -FKKVGNFLSRFKS-IPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 437 (441)
Q Consensus 372 -f~~v~~~~~r~~~-~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~~~~~~~ 437 (441)
|+++++|++||++ +|||++||||||+||||||+||+|+|+|+|+|++|++++||||++|||++|+-
T Consensus 416 ~~~~v~~f~~rf~~giPsl~~~~~L~V~Gdv~fg~~v~l~G~v~i~~~~g~~~~ip~g~~l~~~~~~~ 483 (484)
T 3gue_A 416 HYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLKEEPLIIGSGRVLDNEVVVV 483 (484)
T ss_dssp TSSSHHHHHHHHTTCCCBCTTEEEEEEESSEEECTTCEEEEEEEEEECSSSCEEECTTCEEESCEEEE
T ss_pred hcCcHHHHHHhcCCCCCChhhCCEEEEecceEECCCcEEEEEEEEEcCCCCeeecCCCCEecceecCC
Confidence 9999999999998 99999999999999999999999999999999999999999999999999873
No 3
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=7.9e-103 Score=819.97 Aligned_cols=437 Identities=85% Similarity=1.304 Sum_probs=409.6
Q ss_pred HHHHHHHHHHhhhhcccCHhHHHHHHHHHHHHhccCCCCccCCccccCCCCCcccCCCCCCCCCChhhHHhhcCCeEEEE
Q 013550 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVLK 84 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~l~~~~~~~~~g~~~l~kvavv~ 84 (441)
+++|++|.++++..++.++.+++.|.++|++|++++++.++|++|+|++++.+.+|++++...++++.|+++++|++||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vvi 84 (469)
T 2icy_A 5 TENLPQLKSAVDGLTEMSESEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLK 84 (469)
T ss_dssp CCCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHC------CCGGGCBCCCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhhcCchhccchhhHHHHHHHHHHHHhccCCCCcccccccCCcccccChhhcccchhhHHHHHHhhccceEEE
Confidence 67899999999665556999999999999999988767899999999999999999998744466778999999999999
Q ss_pred EcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEEEeecc
Q 013550 85 LNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQ 164 (441)
Q Consensus 85 LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~Q~~ 164 (441)
||||+|||||++.||+|+||++|+||||++++||++++++||+.+||+||||++||+.|++||++|++++.+|++|+|++
T Consensus 85 LAGGlGTRLg~~~PK~llpv~~gkp~Le~~i~~l~~~~~~~G~~ip~vimts~~t~e~t~~~f~~~~~fG~~I~~f~Q~~ 164 (469)
T 2icy_A 85 LNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSK 164 (469)
T ss_dssp EECCBSGGGTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTSSSCEEEEECCC
T ss_pred EcCCccccCCCCCCccccccCCCCCHHHHHHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHhcccCCceEEEEEecc
Confidence 99999999999999999999889999999999999999999999999999999999999999999998889999999999
Q ss_pred ceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHHcCCcce
Q 013550 165 YPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYC 244 (441)
Q Consensus 165 ~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~ 244 (441)
+||++.+++++++++.+++.++|+|+||||+|.+|++||++++|+++|++|++|+|+|||++++||.++|||.+++++++
T Consensus 165 ~P~i~~e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL~~~~d~~ll~~~~~~~a~~t 244 (469)
T 2icy_A 165 YPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYC 244 (469)
T ss_dssp EECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHHHHHHHTCSEE
T ss_pred eeeEccccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCcCCcccCHHHHHHHHHcCCCee
Confidence 99999999999998876688999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhcccCcccccccccc
Q 013550 245 MEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEV 324 (441)
Q Consensus 245 ~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~~~~lp~~vn~K~i 324 (441)
|+|++|+.+++++|++|.++|+++++||+|+|++++++|++..+|++||||||||++++|++++++....||+|+|+|++
T Consensus 245 ~~v~~k~~~~~~~Gvl~~~dg~~~vvE~~e~p~~~~~e~k~~~~~~~~N~g~y~~~~~~L~~i~~~~~~~lp~~v~~K~i 324 (469)
T 2icy_A 245 MEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEV 324 (469)
T ss_dssp EEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEEEE
T ss_pred EEEEEeccCCCceeEEEEECCEEEEEEEeccChhhhhhhccccccceeeEEEEEEcHHHHHHHHhcccCCchhhccceec
Confidence 99999999999999999999999999999999999888877889999999999999999999999888999999999999
Q ss_pred CCCCcceeehhhhhhH----------------------------hhhhhccccCeeEeccCcCCCCCCeEEeCCCccchh
Q 013550 325 DGIKVLQLETAAGAAI----------------------------RSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVG 376 (441)
Q Consensus 325 ~~~~~iqlEta~g~ai----------------------------~sDly~~~~~~l~~~~~r~~~~~P~i~L~~~f~~v~ 376 (441)
++.+++|||++||+++ +||+|.++++++++++.|.++..|+|+|+++|++|+
T Consensus 325 d~~~~~klE~~~~D~~~~~~~~~~~~V~R~~F~PvKn~~dll~~~s~l~~~~~g~~~~~~~~~~~~~P~v~l~~~~~~v~ 404 (469)
T 2icy_A 325 DGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVA 404 (469)
T ss_dssp TTEEEECCBCCGGGGGGGSTTCEEEECCGGGCCBCCSHHHHHHHHSTTEEEETTEEEECTTCCSSSCCEEEECGGGCSHH
T ss_pred CCCceEeehHhhHHHHHhcCCeEEEEechhHcCcCCCHHHHHHHHHHHHHHhcCcEEecCcccCCCCCeEEcChhhhhHH
Confidence 9888999999999998 999999999999999998777789999999999999
Q ss_pred hHhhccCCCCceeeeceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeeccceecCCCCC
Q 013550 377 NFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 441 (441)
Q Consensus 377 ~~~~r~~~~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~~~~~~~~~~~ 441 (441)
+|++||+++|||++||||||+||||||+||+|+|+|+|+|++|++++||+|++|||++|+|||||
T Consensus 405 ~f~~rf~~~p~~~~~~~l~v~gdv~fg~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~~~~~~~~~ 469 (469)
T 2icy_A 405 TFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469 (469)
T ss_dssp HHHHTBSSCCBCTTEEEEEEESEEEECSSCEEEEEEEEECCTTCEEEECTTCEEESCEECCC---
T ss_pred HHHHhcCCCcccccCCeEEEEeeeEEcCCcEEEEEEEEEcCCCCeeecCCCCEeecceeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999997
No 4
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-96 Score=771.72 Aligned_cols=432 Identities=54% Similarity=0.893 Sum_probs=400.1
Q ss_pred HHHHHHHHHHhh---hhcccCHhHHHHHHHHHHHHhccC--CCCccCCccccCCCCCcccCCCCCCCCCChhhHHhhcCC
Q 013550 5 AEKLTQLKSAVA---GLNQISENEKNGFINLVARYLSGE--AQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDK 79 (441)
Q Consensus 5 ~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~i~p~~~~~~~~~~~l~~~~~~~~~g~~~l~k 79 (441)
+++|++|.++++ ..++.+..+++.|.++|++|+++. .+.++|++|+|++++.+.+|+++... +.|..+++|
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~----~~~~~~~~k 92 (488)
T 2i5k_A 17 RNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKYEIISQQ----PENVSNLSK 92 (488)
T ss_dssp HHHTTCCC--------CCSCTHHHHHHHHHHHHHHHHHHHSCCSCCGGGEECCCTTTEEEHHHHHSS----CCCSTTGGG
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccccCChhcccChhhcccc----hhhhhhcCC
Confidence 566777777664 334568999999999999999764 46999999999999999888876531 137788999
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEE
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHT 159 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~ 159 (441)
++||+||||+|||||++.||+|+||++|+||||++++++++++.++|+.|||+||||++|+++|++||++|++++.+|.+
T Consensus 93 ~avViLAGG~GTRmgs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~~i~~ 172 (488)
T 2i5k_A 93 LAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRS 172 (488)
T ss_dssp EEEEEECCCBSGGGTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSSSCEEEE
T ss_pred ceEEEEcCCCcccCCCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccccCceEEE
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999888889999
Q ss_pred EeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHHc
Q 013550 160 FNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQN 239 (441)
Q Consensus 160 f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~ 239 (441)
|.|+++||++.+|+++++++.+++.++|+|+||||+|.+|+.+|++++|.++|++|++|+|+|||++.+||.+||||.++
T Consensus 173 f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~~L~~~~~~ 252 (488)
T 2i5k_A 173 FNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIET 252 (488)
T ss_dssp ECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHHHHHHHHHS
T ss_pred EEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHHHHHHHHhc
Confidence 99999999999999999988666689999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHhcccCccccc
Q 013550 240 KNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIP 319 (441)
Q Consensus 240 ~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~~~~~lp~~v 319 (441)
+++++++++++++|++++|++|+.+|+.+++||+|+|++++++|++..+|++||||||||++++|++++++....||+|+
T Consensus 253 ~a~~t~~v~~~~~p~~~yG~Iv~~dG~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v 332 (488)
T 2i5k_A 253 GAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIP 332 (488)
T ss_dssp CCSEEEEEEECCGGGSSSCEEEEETTEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBC
T ss_pred CCcEEEEEEEecCCCCceeEEEEECCcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHHHhhccCCCccee
Confidence 99999999999999999999999999999999999999999988888899999999999999999999999889999999
Q ss_pred cccccC----CCCcceeehhhhhhH----------------------------hhhhhccccCeeEeccCcCCCCCCeEE
Q 013550 320 NPKEVD----GIKVLQLETAAGAAI----------------------------RSDLYTLADGFVTRNEARKNPANPTIE 367 (441)
Q Consensus 320 n~K~i~----~~~~iqlEta~g~ai----------------------------~sDly~~~~~~l~~~~~r~~~~~P~i~ 367 (441)
|+|++| +.+++||||+||++| +||+|.++.|++++++.| ....|+|.
T Consensus 333 ~~K~i~~~~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~~F~PvKn~~~ll~~~~~~~~~~~g~~~~~~~~-~e~~P~v~ 411 (488)
T 2i5k_A 333 NQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSR-FGPNPLIK 411 (488)
T ss_dssp CEECCCC-----CEECCBCCGGGGGGGSSSCEEEEECGGGCCBCCSHHHHHHHTSTTEEEETTEEEECTTC-CSSCCEEE
T ss_pred cCccccCCCCCCceEEeeehhhhHHhhccCceEEEecccccccccCCccHHHHHHHHHHHhcCcEeecCCc-CCCCCeEE
Confidence 999997 678999999999999 999999999999999998 45679999
Q ss_pred eCCCccchhhHhhccCCCCceeeeceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeeccceecCCCCC
Q 013550 368 LGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 441 (441)
Q Consensus 368 L~~~f~~v~~~~~r~~~~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~~~~~~~~~~~ 441 (441)
|++.|+++++|++||+++|+|++|+||||+|||+||+||+|+|+|+|+|++|++++||+|++|||++|+|||||
T Consensus 412 ~~~~~~~~~~~~~rf~~~p~i~~~~~l~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 412 LGSHFKKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp ECGGGSSHHHHHHHCSSCCBCTTEEEEEEESSEEECTTCEEEEEEEEECCTTCCEEECTTCEEEEEEEEEEEEE
T ss_pred ECCcccchhhHHhhcCCCccccccceEEEEeeeEEcCCcEEEEEEEEEcCCCCeEEeCCCCEEecceeeccccc
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999986
No 5
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=2e-95 Score=767.89 Aligned_cols=420 Identities=35% Similarity=0.547 Sum_probs=386.7
Q ss_pred HHHHHHHhhhhcccCHhHHHHHHHHHHHHhccCCCCccCCccccCCCCCcccCCCCCCCCCChhhHHhhcCCeEEEEEcC
Q 013550 8 LTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLAPVPEDPAETKKLLDKLVVLKLNG 87 (441)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~l~~~~~~~~~g~~~l~kvavv~LaG 87 (441)
+++..+.+ ......+.+++.|.++|++|++++++.++|++|+|+ +.+.+|++++. +.|+++|+|++||+|||
T Consensus 12 ~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~i~p~--~~~~~~~~~~~-----~~g~~~l~k~avViLAG 83 (505)
T 2oeg_A 12 AQACVKKM-RDAKVNEACIRTFIAQHVMVSKGETGSIPDSAIMPV--DSLDALDSLTI-----ECDNAVLQSTVVLKLNG 83 (505)
T ss_dssp HHHHHHHH-HHTTCCHHHHHHHHHHHHHHHTTCCCCCCGGGCBCC--CCCCBGGGCCC-----CCCHHHHHTEEEEEEEC
T ss_pred HHHHHHHH-HHcCCChHHHHHHHHHHHHHHhcCCCCcChhhcCCh--hhccChhhcch-----hHHHHHHhcceEEEEcC
Confidence 43444443 335578999999999999999887789999999998 67788888753 37899999999999999
Q ss_pred CCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHH-HhCCC---CCceEEEeec
Q 013550 88 GLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIE-KYSKS---NVEIHTFNQS 163 (441)
Q Consensus 88 GlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~-~~~~~---~~~i~~f~Q~ 163 (441)
|+|||||+++||+|+||.+|+||||++++||++++.+||+.|||+||||++||+.|++||+ +|++| +.+|++|+|+
T Consensus 84 GlGTRLg~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~ 163 (505)
T 2oeg_A 84 GLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQN 163 (505)
T ss_dssp CCCGGGTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHHHHTTCCCCCEEECC
T ss_pred CcccccCCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhccCCCccceEEEEEc
Confidence 9999999999999999977999999999999999999999999999999999999999999 87664 3589999999
Q ss_pred cceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHHHcCCcc
Q 013550 164 QYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEY 243 (441)
Q Consensus 164 ~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~ 243 (441)
++||++.+|+.++.++.+ +.++|+|+||||+|.+|++||++++|+++|++|+||+|+|||++.+||.++||+.++++++
T Consensus 164 ~~P~~~~~~~~~i~~~~~-~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~~llg~~~~~~ad~ 242 (505)
T 2oeg_A 164 QVPKILQDTLEPAAWAEN-PAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDKRVLAYMEKEKIDF 242 (505)
T ss_dssp CEECEETTTCCBCCCTTC-GGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCHHHHHHHHHHTCSE
T ss_pred CEEeEecCCCceeecCCC-CccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCHHHHHHHHhcCCcE
Confidence 999999999776654432 5699999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeccCCccceEEEE-------eCCe-------eEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 244 CMEVTPKTLADVKGGTLIS-------YEGK-------VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 244 ~~~vv~k~~~dekgGvl~~-------~~g~-------~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
+|+|++|+.+++++|+++. ++|+ ++++||+|+|++++++|++..+|++||||||||++++|+++++
T Consensus 243 ~~~v~~k~~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~Ninn~~~~l~~l~~~~~ 322 (505)
T 2oeg_A 243 LMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNNLWIRLPVLLETMQ 322 (505)
T ss_dssp EEEEEECCTTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEecCCccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcccCccccCeeEEEEEEEEHHHHHHHHh
Confidence 9999999999999999999 8999 9999999999999999999999999999999999999999999
Q ss_pred h--cccCccccccccccC-----CCCcceeehhhhhhH----------------------------hhhhhcccc-CeeE
Q 013550 310 A--DALKMEIIPNPKEVD-----GIKVLQLETAAGAAI----------------------------RSDLYTLAD-GFVT 353 (441)
Q Consensus 310 ~--~~~~lp~~vn~K~i~-----~~~~iqlEta~g~ai----------------------------~sDly~~~~-~~l~ 353 (441)
. ..+.||+|+|+|++| +.+++||||+||++| |||+|.+++ +.+.
T Consensus 323 ~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~~FsPvKn~~dl~~~~sdly~~~~~~~~~ 402 (505)
T 2oeg_A 323 EHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPRSRFAPVKTCADLLALRSDAYVVTDDFRLV 402 (505)
T ss_dssp HTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCTTCEEEECCGGGCCCCSSHHHHHHHHSTTEEECTTCCEE
T ss_pred hhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcCcceEEEeccceeecccCCCCHHHHHHHHHhhcCCceEE
Confidence 8 457899999999998 567999999999999 999999998 6777
Q ss_pred eccCcCCCCCCeEEeCCC-ccchhhHhhccCC-CCceeeeceEEEeeeeEECcceEEEEEEEEEcC-CCCeeecCCCCee
Q 013550 354 RNEARKNPANPTIELGPE-FKKVGNFLSRFKS-IPSIIELDSLKVTGDVWFGANITLKGKVTIAAK-SGEKLEIPDGAVL 430 (441)
Q Consensus 354 ~~~~r~~~~~P~i~L~~~-f~~v~~~~~r~~~-~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~-~~~~~~ip~g~~l 430 (441)
++|+|.+ ..|.|+|+|. |+++++|++||++ +|||++||||+|+|||+||+||+|+|+|+|.|+ +|++++||+|+++
T Consensus 403 ~~~~~~~-~~p~i~l~p~~~~~~~~~~~r~~~g~psi~~~~~L~v~G~~~f~~~v~l~G~v~i~a~~~~~~~~ip~g~~l 481 (505)
T 2oeg_A 403 LDDRCHG-HPPVVDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKL 481 (505)
T ss_dssp ECGGGTT-CCCEEEECHHHHSSHHHHHHHSTTCCCBCTTEEEEEEESSEECCTTCEEEEEEEEECCSCSSCEECCTTCEE
T ss_pred EcccccC-cCCeEEEChhHcCcHHHHHHhcCCCCCccccCcEEEEEcceEEccCcEEEEEEEEEecCCCCcEEeCCCCEE
Confidence 8999865 5799999999 8999999999998 999999999999999999999999999999999 9999999999999
Q ss_pred ccceecC
Q 013550 431 ENKEING 437 (441)
Q Consensus 431 ~~~~~~~ 437 (441)
+|+.++.
T Consensus 482 ~n~~~~~ 488 (505)
T 2oeg_A 482 NDTTASP 488 (505)
T ss_dssp ESCEECC
T ss_pred eCceech
Confidence 9998874
No 6
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=5.5e-83 Score=679.84 Aligned_cols=417 Identities=19% Similarity=0.215 Sum_probs=357.8
Q ss_pred HHHHHHHHHHhhhhcccCHhHHHHHHHHHHHHhccCCCCccCCccccCCCCCcccCCCCC----CCCCChhhHHhhcCCe
Q 013550 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEAQHVEWSKIQTPTDKIVVPCDSLA----PVPEDPAETKKLLDKL 80 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~l~----~~~~~~~~g~~~l~kv 80 (441)
.+++++|+++|..++..+++++..|.+.+++++....+..+++.++|+|..... .++. +...+++.|.++|+|+
T Consensus 38 ~~e~~~L~~qL~~~d~~~~~gl~~~~~~a~~~l~~~~~~~~~~~~~p~P~~~~~--~~l~~~~~~~~~~~~~Gl~~i~kv 115 (630)
T 3ogz_A 38 NERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEVDFAALEMPPLIFEA--PSLHRRTAERTALENAGTAMLCKT 115 (630)
T ss_dssp CHHHHHHHHHHHHGGGTSTTHHHHHHHHHHHHHHHHTSCCCCSEEECCSCEEEC--CCTTCCCHHHHHHHHHHHHHGGGE
T ss_pred HHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHhhccccCCcccccccCCCCCcc--ccccCCHHHHHHHHHHhHHHHhhc
Confidence 567889999999999899999999999999999554567788999977642111 1221 1223456799999999
Q ss_pred EEEEEcCCCCCcCCCCCCccceee--CCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v--~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
|||+||||||||||+++||+++|| ++|+||||++++||+ +++|+.|||+||||+.||++|++||+++...+.+|+
T Consensus 116 avvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~---~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl~~~~V~ 192 (630)
T 3ogz_A 116 VFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQ---RVGGKEVPFVIMTSDDTHDRTLQLLRELQLEVPNLH 192 (630)
T ss_dssp EEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHH---HHHCTTCCEEEEECTTTHHHHHHHHHHTTCCCTTEE
T ss_pred eEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHH---HHhCCCCcEEEEecccchHHHHHHHHHhCCCcccEE
Confidence 999999999999999999999998 579999999999999 467999999999999999999999999655678999
Q ss_pred EEeeccceeee-cCCCcccCCCCCCCccccCcCCCcccchhhhhcC------------------hHHHHHHCCCcEEEEE
Q 013550 159 TFNQSQYPRLC-ADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSG------------------KLDALISQGKEYVFAA 219 (441)
Q Consensus 159 ~f~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sg------------------ll~~l~~~G~eyi~v~ 219 (441)
+|+|+++||++ .+|+++++.+ ++++|+|+||||+|.||++|| +|++|+++|+||+||+
T Consensus 193 ~F~Q~~~P~i~~~~g~l~l~~~---~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~ 269 (630)
T 3ogz_A 193 VLKQGQVFCFADSAAHLALDET---GKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFI 269 (630)
T ss_dssp EEECCCEECBSSTTCCBCBCTT---SSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEE
T ss_pred EEEcCCEEEEecCCCceeecCC---CcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEE
Confidence 99999999996 6789999876 799999999999999999999 9999999999999999
Q ss_pred cCCc-ccccccHHHHHHHHHcCCcceEEEeeeccCCccceEEEEe---CCee---EEEEeecCChhhhhh-------hcc
Q 013550 220 NSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISY---EGKV---QLLEIAQVPDEHVNE-------FKS 285 (441)
Q Consensus 220 nvDN-L~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~---~g~~---~lvEysq~~~~~~~~-------~~~ 285 (441)
|+|| |++++||.||||+++++++|+++||+|+ +.|++|++|+. +|++ ++|||+|++++.++. |.+
T Consensus 270 ~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~-p~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~~~~ 348 (630)
T 3ogz_A 270 QDTNAGATITIPISLALSAEHSLDMNFTCIPRV-PKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSD 348 (630)
T ss_dssp CTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCC-SSCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC----------
T ss_pred ccCCccccccCHHHhHHHHhcCCCEEEEEEECC-CCcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCCCcccccc
Confidence 9999 9999999999999999999999999984 67888889984 8999 569999999987653 556
Q ss_pred CCCcceE--EEeeeeeeHHHHHHHHHhcccCccccccccccCCC-----CcceeehhhhhhH------------------
Q 013550 286 IEKFKIF--NTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGI-----KVLQLETAAGAAI------------------ 340 (441)
Q Consensus 286 ~~~~~~f--Ntnn~~~~l~~l~~~~~~~~~~lp~~vn~K~i~~~-----~~iqlEta~g~ai------------------ 340 (441)
..+|++| |||||||+++++.+.+++....||+|+|+|++|+. +++||||+||+++
T Consensus 349 ~~~~~~f~GNtNnl~~~L~a~~~~l~~~~~~ip~~vNpK~~d~~~~~~~~~~qLEt~m~d~~~~F~~~~~~v~~~~V~R~ 428 (630)
T 3ogz_A 349 PTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYSDETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFERF 428 (630)
T ss_dssp --CCCSSCEEEEEEEEEHHHHHHHHHHHTTCCCCEECCCBSSSSSCCBSSCBCEECCGGGGGGGCCTTTCCEEEEECCGG
T ss_pred ccccccccccceeeeEEHHHHHHHHHhccCccceecCCcccCCcccccCcchhhhhHHHHHHHhccccCcceeEEEECCC
Confidence 6679988 99999999999999998878899999999999843 4999999999966
Q ss_pred ----------------------------hhhhhccccCeeEeccCcC----------------CCCCCeEEeCCCcc-c-
Q 013550 341 ----------------------------RSDLYTLADGFVTRNEARK----------------NPANPTIELGPEFK-K- 374 (441)
Q Consensus 341 ----------------------------~sDly~~~~~~l~~~~~r~----------------~~~~P~i~L~~~f~-~- 374 (441)
++|+|.+++.+|..++.++ ....|+|.|+|.|. +
T Consensus 429 ~F~PVKn~~~~a~~k~~~g~~~~sp~t~~~dly~~~~~~L~~aG~~v~~~~~~~~~~~~~~~~~~~~P~i~l~p~~~~~~ 508 (630)
T 3ogz_A 429 SYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCASSG 508 (630)
T ss_dssp GCCBCCBCHHHHHHHHHTTCCCCBHHHHHHHHHHHHHHHHHHTTCCCCCCCSCSEEETTTTEEECCCSEEEECHHHHTTC
T ss_pred eeecccCChhHhhhhhccCCCcCChHHHHHHHHHHHHHHHHHcCceecccccchhhhhcCccccCCCCEEEEeccccccc
Confidence 7888988876665544432 23469999999985 4
Q ss_pred -hhhHhhccCC--CCceeeeceEEEeeeeEECcceEEEEEEEEEcCCCCe----eecCCCCeeccc
Q 013550 375 -VGNFLSRFKS--IPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEK----LEIPDGAVLENK 433 (441)
Q Consensus 375 -v~~~~~r~~~--~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~----~~ip~g~~l~~~ 433 (441)
++++++||++ .++|...++|+|+|+|.| +||.|+|+|+|.|++|++ +.+.. ++.|+
T Consensus 509 ~~~~~~~k~~~~~~~~i~~~S~L~veg~v~~-~~l~LdG~lvI~a~~~~~~~~~v~~~~--~v~n~ 571 (630)
T 3ogz_A 509 SLDDLARVFPTPEKVHIDQHSTLIVEGRVII-ESLELYGALTIRGPTDSMALPHVVRNA--VVRNA 571 (630)
T ss_dssp CHHHHHHHCSSGGGEEECTTCEEEEESSEEE-SCEEEESEEEEECCSSTTSCCEEECSE--EEECC
T ss_pred cHHHHHHHhCCCCCceecCCcEEEEEEEEEE-EEEEEeeEEEEEcCCCCccCceEEecc--eEecC
Confidence 7999999988 889999999999999666 999999999999999988 66654 55553
No 7
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=8.7e-71 Score=565.32 Aligned_cols=306 Identities=20% Similarity=0.299 Sum_probs=272.2
Q ss_pred CChhhHHhhc--CCeEEEEEcCCCCCcCCCCCCccceee--CCCCchHHHHHHHHHHHhh---hh----CCCcCEEEeeC
Q 013550 68 EDPAETKKLL--DKLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNA---KY----GCNVPLLLMNS 136 (441)
Q Consensus 68 ~~~~~g~~~l--~kvavv~LaGGlGTRLG~~~PK~~l~v--~~gktfLdl~~~qi~~l~~---~~----g~~iPl~IMtS 136 (441)
++++.|++++ +|+|||+||||+|||||++.||+|+|| ++|+||||++++||+++++ ++ ++.|||+||||
T Consensus 22 ~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS 101 (405)
T 3oc9_A 22 EHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTN 101 (405)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEEC
T ss_pred HHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeC
Confidence 4567899999 799999999999999999999999999 8999999999999987653 44 68899999999
Q ss_pred CCChhHHHHHHHHhCCC---CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCC
Q 013550 137 FNTHDDTSKIIEKYSKS---NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGK 213 (441)
Q Consensus 137 ~~T~e~T~~~l~~~~~~---~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~ 213 (441)
++||++|++||++|++| +.+|++|+|+++||++.+|+++++++ ++++|+|+||||+|.||++||+|++|+++|+
T Consensus 102 ~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~---~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gi 178 (405)
T 3oc9_A 102 EETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKK---DKPYMAPNGHGGLFKALKDNGILEFMNEKGI 178 (405)
T ss_dssp TTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEET---TEECEEECCGGGHHHHHHHTTHHHHHHHHTC
T ss_pred CccHHHHHHHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCC---CccccccCCChHHHHHHHHCCcHHHHHhcCC
Confidence 99999999999998875 35799999999999999999999876 8999999999999999999999999999999
Q ss_pred cEEEEEcCCc-ccccccHHHHHHHHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceE
Q 013550 214 EYVFAANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIF 292 (441)
Q Consensus 214 eyi~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~f 292 (441)
+|+||+|+|| |++++||.|+|||++++++++|+|++|+.|++++|++|++||+++|+||+|+|++ .++++..++.+|
T Consensus 179 eyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~dg~~~vvEysei~~e--~e~~~~~g~l~f 256 (405)
T 3oc9_A 179 KYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTELTDE--LNKQLSNGEFIY 256 (405)
T ss_dssp CEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGCCTT--TTCBCTTSCBSS
T ss_pred EEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEECCeeEEEEEeeCCHH--HhhcCCCCceee
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999 556666666666
Q ss_pred ---EEeeeeeeHHHHHHHHHhcccCccccccccccC-----C-------CCcceeehhhhhhH-----------------
Q 013550 293 ---NTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD-----G-------IKVLQLETAAGAAI----------------- 340 (441)
Q Consensus 293 ---Ntnn~~~~l~~l~~~~~~~~~~lp~~vn~K~i~-----~-------~~~iqlEta~g~ai----------------- 340 (441)
|++||+|++++|++++ ...||+|+|.|++| | ++++|||++++++|
T Consensus 257 n~~Ni~~h~fs~~fL~~i~---~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~~~~~~~eV~R~~eF 333 (405)
T 3oc9_A 257 NCGHISINGYSTSFLEKAA---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLATKVSIFEIQRFIEF 333 (405)
T ss_dssp CEEEEEEEEEEHHHHHHHT---TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSCEEEEECCHHHHC
T ss_pred ccceeEeeecCHHHHHHhh---hccCCcEEeccccCccCCCCCCcccCCcceeehHHHHHHHHHhccceEEEEEChHhcc
Confidence 5555568999999998 45799999999995 2 35899999999999
Q ss_pred -----------------hhhhhccccCeeEeccCcCCCCC-CeEEeCCC--cc--chhhHhhc
Q 013550 341 -----------------RSDLYTLADGFVTRNEARKNPAN-PTIELGPE--FK--KVGNFLSR 381 (441)
Q Consensus 341 -----------------~sDly~~~~~~l~~~~~r~~~~~-P~i~L~~~--f~--~v~~~~~r 381 (441)
|+|+|.++..|+..+++++.... ..|+++|. |. .++.+..|
T Consensus 334 ~PlKn~~g~~~dsp~tar~~l~~~~~~wl~~ag~~~~~~~~~~~Eispl~sy~ge~l~~~~~~ 396 (405)
T 3oc9_A 334 SALKNSLNESFDNVNTVKRDWYRLNIYYLKKAGAIVDDSKSPICEISFRKSFEEEGLKEFKGK 396 (405)
T ss_dssp CBCCCCTTSSSSSHHHHHHHHHHHHHHHHHHTTCEEECSSCCCEEECTTTCSSSGGGGGGTTC
T ss_pred cceecCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEcCCCCccEEeCcccccCccCccccCCc
Confidence 89999999999988887764432 36899998 43 45554444
No 8
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=8.6e-69 Score=565.01 Aligned_cols=356 Identities=17% Similarity=0.206 Sum_probs=299.3
Q ss_pred HHHHHHHHHHhhhh-cccCHhHHHHHHHHHHHHhccCCCCccCC-ccccCCCCCcccCCCCCC--CCCChhhHHhhc--C
Q 013550 5 AEKLTQLKSAVAGL-NQISENEKNGFINLVARYLSGEAQHVEWS-KIQTPTDKIVVPCDSLAP--VPEDPAETKKLL--D 78 (441)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~i~p~~~~~~~~~~~l~~--~~~~~~~g~~~l--~ 78 (441)
.++.++|++++..+ + ...+.++|++....++. ..++ .|+|+|++.+.++.++.. ...+++.|+++| +
T Consensus 30 ~~ek~~l~~ql~~~~d------~~~l~~~~~~~~~~~~~-~~~~~~i~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~g 102 (486)
T 2yqc_A 30 IDQQQEFIDQLSTIEE------PAKLISTVEQAIQFSQT-NSTSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGNG 102 (486)
T ss_dssp HHHHHHHHHHHHTSSS------HHHHHHHHHHHHHHTC-----CCCEECCCGGGEEETTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcC------HHHHHHHHHHHHhcccc-ccccccccCCChhhccccccCChHHHHHHHHHHHHHHhhC
Confidence 46677888888654 3 23455556655544321 2233 499998887777766532 112446799999 6
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceee--CCCCchHHHHHHHHHHHhhhh----C----CCcCEEEeeCCCChhHHHHHHH
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNAKY----G----CNVPLLLMNSFNTHDDTSKIIE 148 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v--~~gktfLdl~~~qi~~l~~~~----g----~~iPl~IMtS~~T~e~T~~~l~ 148 (441)
|++||+||||+|||||++.||+|+|| ++|+||||+++++|+++++.+ | +.|||+||||++||+.|++||+
T Consensus 103 kvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~ 182 (486)
T 2yqc_A 103 EVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFI 182 (486)
T ss_dssp CEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHHH
T ss_pred CeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHHh
Confidence 99999999999999999999999998 379999999999999998665 7 7899999999999999999999
Q ss_pred HhCCC---CCceEEEeeccceeeecCC-CcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-
Q 013550 149 KYSKS---NVEIHTFNQSQYPRLCADD-FVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN- 223 (441)
Q Consensus 149 ~~~~~---~~~i~~f~Q~~~P~~~~~~-~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN- 223 (441)
+|++| ..+|++|+|+++||++.+| +++++++ +.++|+|+||||+|.+|++||+|++|+++|++|+||+|+||
T Consensus 183 ~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~---~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~ 259 (486)
T 2yqc_A 183 ENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELK---NSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNC 259 (486)
T ss_dssp HTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEET---TEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBT
T ss_pred hccccCCCcceEEEEecccceeEcCCCCccccCCC---CccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCc
Confidence 98765 3579999999999999999 9999876 89999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHcCCcceEEEeeeccCCccceEEEEe--CCeeEEEEeecCChhhhhhhc----cCCCcceEEEeee
Q 013550 224 LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFK----SIEKFKIFNTNNL 297 (441)
Q Consensus 224 L~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~--~g~~~lvEysq~~~~~~~~~~----~~~~~~~fNtnn~ 297 (441)
|+..+||.++|||++++++++++|++|+.+++++|++|.+ +|+++++||+|+|+++++.+. +...|.++|||||
T Consensus 260 l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~Ni~~~ 339 (486)
T 2yqc_A 260 LVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNH 339 (486)
T ss_dssp TCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEETTTTEEEEECGGGSCHHHHHCEETTEEEEESSCEEEEEEE
T ss_pred eeeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEEecCCCEEEEEEecCCHHHhhcccccccccccccceeEEEE
Confidence 6669999999999999999999999999999999999998 999999999999999887652 3347899999999
Q ss_pred eeeHHHHHHHHHhcccC---ccccccccccC-------------CCCcceeehhhhhhH---------------------
Q 013550 298 WVNLKAIKRLVEADALK---MEIIPNPKEVD-------------GIKVLQLETAAGAAI--------------------- 340 (441)
Q Consensus 298 ~~~l~~l~~~~~~~~~~---lp~~vn~K~i~-------------~~~~iqlEta~g~ai--------------------- 340 (441)
||++++|++++.+.... ||+|+|+|+++ +++++||||+||++|
T Consensus 340 ~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~~~g~~~~p~~pn~~klE~~~~d~~~~~~l~~~~~~~V~R~~~FsP 419 (486)
T 2yqc_A 340 YYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVELNKFGCLEVDRLDEFSP 419 (486)
T ss_dssp EEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECTTTCCEECCSSCCEEEEECCGGGGGGGSCGGGEEEEEECHHHHCCB
T ss_pred EEeHHHHHHHHHhhcCcccCCcceEeccccCccccccCeeccCCCCCeeeeeehHhhHHhhcccCceEEEEECcccceee
Confidence 99999999977766666 99999999764 134899999999888
Q ss_pred ---------------hhhhhccccCeeEeccCcCCCCCCeEEeCCC
Q 013550 341 ---------------RSDLYTLADGFVTRNEARKNPANPTIELGPE 371 (441)
Q Consensus 341 ---------------~sDly~~~~~~l~~~~~r~~~~~P~i~L~~~ 371 (441)
+.|+|.++..||..++..+.+ ...|+++|.
T Consensus 420 vKn~~~~~~dsp~ta~~~l~~~~~~~l~~aG~~~~~-~~~~eisp~ 464 (486)
T 2yqc_A 420 LKNADGAKNDTPTTCRNHYLERSSKWVIQNGGVIDN-QGLVEVDSK 464 (486)
T ss_dssp CCSCTTSSSSSHHHHHHHHHHHHHHHHHHTTCEECT-TCCCBCCTT
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCeecC-CCcEEEcce
Confidence 788888888888877776532 235777777
No 9
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=2e-66 Score=548.98 Aligned_cols=377 Identities=18% Similarity=0.256 Sum_probs=314.7
Q ss_pred HHHHHHHHHHhhhhcccCHhHHHHHHHHHHHHhccCC----CCccCCccccCCCCCcccCCCCCC--CCCChhhHHhhc-
Q 013550 5 AEKLTQLKSAVAGLNQISENEKNGFINLVARYLSGEA----QHVEWSKIQTPTDKIVVPCDSLAP--VPEDPAETKKLL- 77 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~----~~~~~~~i~p~~~~~~~~~~~l~~--~~~~~~~g~~~l- 77 (441)
.++.++|+++|..+ +...|.++|++++.... +...++.|+|+|++.+.+|.+ .. ...+++.|.+++
T Consensus 27 ~~ek~~l~~ql~~~------d~~~~~~~~~~~~~~~~~s~~~~~~~~~i~p~p~~~~~~~~~-~~~~~~~~~~~Gl~~i~ 99 (505)
T 1jv1_A 27 EAQQVELYAELQAM------NFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPREVLGSATR-DQDQLQAWESEGLFQIS 99 (505)
T ss_dssp HHHHHHHHHHHHTC------CHHHHHHHHHHHHHCC-----------CCBCCCGGGEEETTT-TGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------CHHHHHHHHHHHHHhhhhccccCcccccccCCChHhcccccC-ChHHHHHHHHHhHHhhc
Confidence 46777888888543 34468888888886421 112247799999887777755 21 112345788886
Q ss_pred -CCeEEEEEcCCCCCcCCCCCCccceee--CCCCchHHHHHHHHHHHh----hhhC--CCcCEEEeeCCCChhHHHHHHH
Q 013550 78 -DKLVVLKLNGGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLN----AKYG--CNVPLLLMNSFNTHDDTSKIIE 148 (441)
Q Consensus 78 -~kvavv~LaGGlGTRLG~~~PK~~l~v--~~gktfLdl~~~qi~~l~----~~~g--~~iPl~IMtS~~T~e~T~~~l~ 148 (441)
+|+++|+||||+|||||++.||+|+|| ++|+||||+++++|++++ +++| +.+||+||||++||+.|++||+
T Consensus 100 ~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~ 179 (505)
T 1jv1_A 100 QNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFT 179 (505)
T ss_dssp TTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHH
T ss_pred cCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHH
Confidence 899999999999999999999999998 799999999999998854 5578 7899999999999999999999
Q ss_pred HhCCCCC---ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-c
Q 013550 149 KYSKSNV---EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-L 224 (441)
Q Consensus 149 ~~~~~~~---~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L 224 (441)
+|++|+. +|++|.|+++||++.+|+++++++ +.++|+|+||||+|.+|+.+|++++|+++|++|+||+|+|| |
T Consensus 180 ~~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~---~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L 256 (505)
T 1jv1_A 180 KHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEK---NKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (505)
T ss_dssp HTGGGGSCGGGEEEEECCEEECEETTSCBCEEET---TEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred hhhhcCCCcCceEEEEecceEEEcCCCcccccCC---cccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccc
Confidence 9887644 799999999999999999999876 89999999999999999999999999999999999999999 6
Q ss_pred cccccHHHHHHHHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhc--cCCCcceEEEeeeeeeHH
Q 013550 225 GAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFK--SIEKFKIFNTNNLWVNLK 302 (441)
Q Consensus 225 ~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~--~~~~~~~fNtnn~~~~l~ 302 (441)
++++||.++||+++++++++++|++|+.+++++|++|.++|+++++||+|+|++.++.+. +...|+++|||||||+++
T Consensus 257 ~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~~f~l~ 336 (505)
T 1jv1_A 257 VKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVP 336 (505)
T ss_dssp CCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHH
T ss_pred cccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEECCeEEEEEEeeCCHHHhhhcccccccccceeeEEEEEecHH
Confidence 999999999999999999999999999999999999999999999999999999887664 456799999999999999
Q ss_pred HHHHHHHhcccCccccccccccC-----C-------CCcceeehhhhhhH------------------------------
Q 013550 303 AIKRLVEADALKMEIIPNPKEVD-----G-------IKVLQLETAAGAAI------------------------------ 340 (441)
Q Consensus 303 ~l~~~~~~~~~~lp~~vn~K~i~-----~-------~~~iqlEta~g~ai------------------------------ 340 (441)
+|+++.++....||+|+|+|+++ + ++++||||+||++|
T Consensus 337 ~L~~i~~~~~~~l~~hv~~Kkip~~d~~g~~v~P~~pn~~klE~~i~d~~~~~~~~~~~~V~R~~~FsPvKn~~~~~~~d 416 (505)
T 1jv1_A 337 FLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKD 416 (505)
T ss_dssp HHHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSSEEEEEECHHHHCCBCCSCTTSSSSS
T ss_pred HHHHHHHhhcccCCceecccccccccCCCCCcCCCCCCceeHHHHHHHHHhhcCceEEEEECcccceeeccCCCCCCCCC
Confidence 99999988778999999999875 1 35799999999988
Q ss_pred -----hhhhhccccCeeEeccCcCCCC-----------------CCeEEeCCC--cc--chhhHh-hccCCCCceeee
Q 013550 341 -----RSDLYTLADGFVTRNEARKNPA-----------------NPTIELGPE--FK--KVGNFL-SRFKSIPSIIEL 391 (441)
Q Consensus 341 -----~sDly~~~~~~l~~~~~r~~~~-----------------~P~i~L~~~--f~--~v~~~~-~r~~~~p~i~~~ 391 (441)
+.|+|.++..||..++..+... ...|+++|. |. .++++- .|--..|.+++.
T Consensus 417 sp~ta~~~l~~~~~~~l~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~Eisp~~sy~ge~l~~~~~~~~~~~~~~~~~ 494 (505)
T 1jv1_A 417 NPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPLIIDE 494 (505)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCEEBCTTCCBCCSSCCCCSTTCCCCCEEECTTTCSSSCSCHHHHTTCEECSSEEEET
T ss_pred CHHHHHHHHHHHHHHHHHHCCCeecccccccccccccccccccCCCeEEECCccccCCCCchHHhcCCccCCCceecc
Confidence 7888888888888777754111 125899998 53 677663 233234766644
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.58 E-value=2.1e-14 Score=151.17 Aligned_cols=189 Identities=18% Similarity=0.195 Sum_probs=137.7
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhC-CCCC
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYS-KSNV 155 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~-~~~~ 155 (441)
+.++||+||||.||||....||+|+|| .||+++++.++.+..++ +- ++|.+ .+..+.+++||++.. .+..
T Consensus 11 ~~~~vvILAaG~GtRm~~~~pK~l~pv-~gkp~i~~~l~~~~~~g------~~~i~vv~-~~~~~~i~~~~~~~~~~~~~ 82 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDTPKVLHTL-AGRSMLSHVLHAIAKLA------PQRLIVVL-GHDHQRIAPLVGELADTLGR 82 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSSCGGGCEE-TTEEHHHHHHHHHHHHC------CSEEEEEE-CTTHHHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCcCcccCCCCCCHHHeEE-CChhHHHHHHHHHHhCC------CCEEEEEe-CCCHHHHHHHHHHHHHhcCC
Confidence 679999999999999999999999999 99999999999998875 33 45555 466888999998632 2345
Q ss_pred ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHH
Q 013550 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KIL 233 (441)
Q Consensus 156 ~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~l 233 (441)
++.+..|. .|.|+|+....- ++.+.+.-..++++.+.|. |...-+. .++
T Consensus 83 ~i~~~~q~------------------------~~lGTa~Av~~a-----~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~ 133 (501)
T 3st8_A 83 TIDVALQD------------------------RPLGTGHAVLCG-----LSALPDDYAGNVVVTSGDTPLLDADTLADLI 133 (501)
T ss_dssp CCEEEECS------------------------SCCCHHHHHHHH-----HTTSCTTCCSEEEEEETTCTTCCHHHHHHHH
T ss_pred cEEEEEcC------------------------CCCCcHHHHHHH-----HHHhccccccceeeecCcceeecHHHHHHHH
Confidence 56654442 578999833211 1112122345788888888 6543222 466
Q ss_pred HHHHHcCCcceEEEeeeccCCccceEEEEeCCee-EEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 234 NHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKV-QLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 234 g~~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~-~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
.++..+++++.+.+++..+|..+|.++...+|+. .++|-.+.+++... -...|++.++|+.+.|+++++.
T Consensus 134 ~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~g~v~~ivEk~~~~~~~~~-------i~~in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 134 ATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQRE-------IREVNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp HHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECGGGCCHHHHH-------CCEEEEEEEEEEHHHHHHHHTT
T ss_pred HHHhhccccceEeeeccCCchhccccccccceeEEeeccccCCChhhcc-------ceeeeceeeeecchhHHHhhhh
Confidence 7788889999988888888888776666677764 56777777766533 2468999999999999998864
No 11
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=99.24 E-value=5.5e-10 Score=115.42 Aligned_cols=207 Identities=17% Similarity=0.195 Sum_probs=115.4
Q ss_pred CCeEEEEEcCCCCCcCC---CCCCccceeeCCCC-chHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCC
Q 013550 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKS 153 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG---~~~PK~~l~v~~gk-tfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~ 153 (441)
.++.+|+||||.||||+ .+.||+|+|+ .|+ +++++.++++.... + -.++|.+.. .++.+.+++.+..+.
T Consensus 19 ~~~~avILAaG~gtRl~plT~~~pK~llpi-~g~~pli~~~l~~l~~~g----~-~~i~vv~~~-~~~~i~~~~~~~~~~ 91 (451)
T 1yp2_A 19 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL-GANYRLIDIPVSNCLNSN----I-SKIYVLTQF-NSASLNRHLSRAYAS 91 (451)
T ss_dssp HHEEEEEC------CCTTTTTTSCGGGCEE-TTTEETTHHHHHHHHHTT----C-CEEEEEESC-CCHHHHHHHHHHCC-
T ss_pred cceEEEEECCCCCCcccchhcCCcceeeEE-CCcceeHHHHHHHHHHCC----C-CEEEEEecc-CHHHHHHHHhhhhhc
Confidence 45889999999999998 5789999999 788 99999999998753 2 135556654 567888888763210
Q ss_pred CCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HH
Q 013550 154 NVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KI 232 (441)
Q Consensus 154 ~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~ 232 (441)
+.. .++.++.+..+..+ .. ......+.|.|+....- ++.+...+.++++|.+.|.+... |. .+
T Consensus 92 ~~~-~~~~~~~v~i~~~~-----~~----~~~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~~D~~~~~-~l~~l 155 (451)
T 1yp2_A 92 NMG-GYKNEGFVEVLAAQ-----QS----PENPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAGDHLYRM-DYEKF 155 (451)
T ss_dssp --------CCEEEEEESC-----SS----TTSCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECSCEECCC-CHHHH
T ss_pred ccc-cccccCcEEEeccc-----cc----ccccccccCcHHHHHHH-----HHHHHhcCCCeEEEecCcEEEcC-CHHHH
Confidence 000 01111112221100 00 00112356776632211 23332234689999999996543 43 57
Q ss_pred HHHHHHcCCcceEEEeeec--cCCccceEEEEe-CCeeEEEEeecCChhh-hhhhc------------cCCCcceEEEee
Q 013550 233 LNHLIQNKNEYCMEVTPKT--LADVKGGTLISY-EGKVQLLEIAQVPDEH-VNEFK------------SIEKFKIFNTNN 296 (441)
Q Consensus 233 lg~~~~~~~~~~~~vv~k~--~~dekgGvl~~~-~g~~~lvEysq~~~~~-~~~~~------------~~~~~~~fNtnn 296 (441)
+.++.++++++++-+.+.. .+. .-|++... +| +++++.+=|... ...++ ......+.|++.
T Consensus 156 ~~~~~~~~~~~tl~~~~~~~~~~~-~~g~v~~d~~~--~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Gi 232 (451)
T 1yp2_A 156 IQAHRETDADITVAALPMDEKRAT-AFGLMKIDEEG--RIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGI 232 (451)
T ss_dssp HHHHHHTTCSEEEEEEEECHHHHT-TSEEEEECTTS--BEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEE
T ss_pred HHHHHHcCCcEEEEEEEcChhhcc-cCCEEEECCCC--CEEEEEECCCchhhccccccccccccccccccCCcceEEeeE
Confidence 7777778888776554432 333 34555443 34 466666655421 11110 001234679999
Q ss_pred eeeeHHHHHHHHHh
Q 013550 297 LWVNLKAIKRLVEA 310 (441)
Q Consensus 297 ~~~~l~~l~~~~~~ 310 (441)
++|+.+.+.+.+++
T Consensus 233 y~~~~~~l~~~l~~ 246 (451)
T 1yp2_A 233 YVISKDVMLNLLRD 246 (451)
T ss_dssp EEEEHHHHHHHHHT
T ss_pred EEEcHHHHHHHHHh
Confidence 99999998877764
No 12
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=99.21 E-value=1.2e-10 Score=111.93 Aligned_cols=184 Identities=9% Similarity=0.078 Sum_probs=122.8
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||+ ||.++++ .|||++++.++++...+ + -.++|.|. ++.+.++++++. .++.
T Consensus 2 ~~~aiIlA~G~stRlp---~K~L~~i-~GkPli~~~l~~l~~~~----~-~~ivVv~~---~~~i~~~~~~~g---~~v~ 66 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKPLADI-GGKPMIQWVYEQAMQAG----A-DRVIIATD---DERVEQAVQAFG---GVVC 66 (252)
T ss_dssp CEEEEEECCCCCSSST---TGGGCEE-TTEEHHHHHHHHHHHTT----C-SEEEEEES---CHHHHHHHHHTT---CEEE
T ss_pred ceEEEEecCcCCCCCC---CcceeeE-CCEEHHHHHHHHHHhCC----C-CeEEEECC---HHHHHHHHHHcC---CEEE
Confidence 5789999999999995 7999999 99999999999988753 2 24555552 588899988643 2332
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
+ .....|.|+|+++.++. .+...+.+++++.++|+ |....+. .++..+
T Consensus 67 ~------------------------~~~~~~~Gt~~~~~~~~------~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~ 116 (252)
T 3oam_A 67 M------------------------TSPNHQSGTERLAEVVA------KMAIPADHIVVNVQGDEPLIPPAIIRQVADNL 116 (252)
T ss_dssp E------------------------CCTTCCSHHHHHHHHHH------HTTCCTTSEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred E------------------------cCCCCCCcHHHHHHHHH------hcCcCCCCEEEEEeCCeeecCHHHHHHHHHHH
Confidence 1 01125788888665442 22112568999999999 6543333 455666
Q ss_pred HHcCCcceEEEeeeccCCcc-----ceEEEEeCCeeEEEEeec--CChhhhhhhcc----CCCcceEEEeeeeeeHHHHH
Q 013550 237 IQNKNEYCMEVTPKTLADVK-----GGTLISYEGKVQLLEIAQ--VPDEHVNEFKS----IEKFKIFNTNNLWVNLKAIK 305 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~dek-----gGvl~~~~g~~~lvEysq--~~~~~~~~~~~----~~~~~~fNtnn~~~~l~~l~ 305 (441)
.++++++++-+++-.++.+. |.++...+|+ ++.+++ +|.. .+.+.. ...-.+.|++.|.|+.++|+
T Consensus 117 ~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~--v~~fsr~~i~~~-~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~ 193 (252)
T 3oam_A 117 AACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGY--ALYFSRATIPWD-RDNFAKADKAIVQPLLRHIGIYAYRAGFIN 193 (252)
T ss_dssp HHSSCSEEEEEEEECCHHHHTCTTSCEEEECTTSB--EEEEESSCSSCC-HHHHHSSSCCCCSCEEEEEEEEEEETTHHH
T ss_pred HhcCCCEEEEeeecCCHHHhhCCCceEEEECCCCe--EEEEeCCCCCCC-CCccccccccccccceEEEEEEEcCHHHHH
Confidence 66788888887776666555 5555556676 566665 3322 111111 11223569999999999999
Q ss_pred HHHHh
Q 013550 306 RLVEA 310 (441)
Q Consensus 306 ~~~~~ 310 (441)
+..+.
T Consensus 194 ~~~~~ 198 (252)
T 3oam_A 194 TYLDW 198 (252)
T ss_dssp HHHHS
T ss_pred HHHcC
Confidence 88753
No 13
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=99.11 E-value=1.1e-09 Score=105.86 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=117.1
Q ss_pred CCeEEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCC
Q 013550 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSN 154 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~ 154 (441)
.++.+|+||||.||||+. ..||+++|+ .|+|++++.++++...+ + -.++|.|...-.+.+.++++....+.
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i-~g~pli~~~l~~l~~~g----~-~~iivv~~~~~~~~~~~~~~~~~~~~ 96 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHLLPV-GRYPMIYHAVYKLKQCD----I-TDIMIITGKEHMGDVVSFLGSGQEFG 96 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGGSEE-TTEEHHHHHHHHHHHTT----C-CEEEEEECTTTHHHHHHHHTTSGGGT
T ss_pred cCcEEEEECCCCccccccccCCCCceecEE-CCEEHHHHHHHHHHHCC----C-CEEEEECChhhHHHHHHHHhhccccC
Confidence 467899999999999987 889999999 89999999999998753 1 24556665544567777776422223
Q ss_pred CceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHH
Q 013550 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILN 234 (441)
Q Consensus 155 ~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg 234 (441)
.++.+..| ..+.|.|+...+. ++.+ +-++++|.+.|.+....--.++.
T Consensus 97 ~~i~~~~~------------------------~~~~G~~~al~~a-----~~~~---~~~~~lv~~~D~~~~~~l~~l~~ 144 (269)
T 4ecm_A 97 VSFTYRVQ------------------------DKAGGIAQALGLC-----EDFV---GNDRMVVILGDNIFSDDIRPYVE 144 (269)
T ss_dssp CEEEEEEC------------------------SSCCCHHHHHHTT-----HHHH---TTSEEEEEETTEEESSCSHHHHH
T ss_pred ceEEEeeC------------------------CccCcHHHHHHHH-----HHhc---CCCcEEEEeCCccCccCHHHHHH
Confidence 33332111 1355666533211 2222 25799999999954432235677
Q ss_pred HHHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHH
Q 013550 235 HLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 235 ~~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~ 306 (441)
.+.++++++++-+.+...+. ..|++...+|+ ++++.+-|.. ....+.|++.++|+.+.++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~-~~g~v~~d~g~--v~~~~ekp~~--------~~~~~~~~Giy~~~~~~l~~ 205 (269)
T 4ecm_A 145 EFTNQKEGAKVLLQSVDDPE-RFGVANIQNRK--IIEIEEKPKE--------PKSSYAVTGIYLYDSKVFSY 205 (269)
T ss_dssp HHHTSSSSEEEEEEECSCGG-GSEEEEEETTE--EEEEEESCSS--------CSCSEEEEEEEEECTTHHHH
T ss_pred HHHhcCCCeEEEEEECCCCC-CceEEEEcCCE--EEEEEECCCC--------CCCcEEEEEEEEECHHHHHh
Confidence 77777888877776655554 45666666665 4444443311 23357799999999887743
No 14
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=99.11 E-value=1.4e-09 Score=111.58 Aligned_cols=203 Identities=11% Similarity=0.140 Sum_probs=119.0
Q ss_pred cCCeEEEEEcCCCCCcCC---CCCCccceeeCCCC-chHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhC
Q 013550 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYS 151 (441)
Q Consensus 77 l~kvavv~LaGGlGTRLG---~~~PK~~l~v~~gk-tfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~ 151 (441)
..++.+|+||||.||||+ .+.||.++|+ .|+ +++++.++++...+ +. ++|.|. +.++.+.+++++..
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi-~gk~pli~~~l~~l~~~g------i~~i~vv~~-~~~~~i~~~~~~~~ 81 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYF-GGKARIIDFALSNALNSG------IRRIGVATQ-YKAHSLIRHLQRGW 81 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEE-TTTEETHHHHHHHHHHTT------CCEEEEEEC-TTCHHHHHHHHHHS
T ss_pred hhceEEEEEcCCCCCccchhhcCCccccccc-CCCCcHHHHHHHHHHhCC------CCeEEEEeC-CChHHHHHHHhhhh
Confidence 456889999999999999 6789999999 898 99999999998753 33 455554 45688889988741
Q ss_pred CCCCceEEEeeccceeeecCCCcccCCCCCCCccccCc---CCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccc
Q 013550 152 KSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYP---PGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIV 228 (441)
Q Consensus 152 ~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P---~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~ 228 (441)
+.... +.+..++. +. + ......| .|.++.... .++.+...+.++++|.+.|.+....
T Consensus 82 ~~~~~---~~~~~v~i--------~~-~---~~~~~~~~~~~Gt~~al~~-----a~~~l~~~~~~~~lv~~~D~~~~~~ 141 (420)
T 3brk_X 82 DFFRP---ERNESFDI--------LP-A---SQRVSETQWYEGTADAVYQ-----NIDIIEPYAPEYMVILAGDHIYKMD 141 (420)
T ss_dssp CCCCG---GGTCEEEE--------EC-C---C-------CCCCHHHHHHT-----THHHHHHHCCSEEEEEESSCEECBC
T ss_pred ccccc---cccCCEEE--------eC-c---cccccCCccccCCHHHHHH-----HHHHHHhcCCCEEEEecccEEEchH
Confidence 11100 00000111 11 0 0000012 566553321 1344433356899999999964432
Q ss_pred cHHHHHHHHHcCCcceEEEeeec-cCCccceEEEEe-CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHH
Q 013550 229 DLKILNHLIQNKNEYCMEVTPKT-LADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 229 Dp~~lg~~~~~~~~~~~~vv~k~-~~dekgGvl~~~-~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~ 306 (441)
--.++..+.++++++++-+.+.. .....-|++... +|+ ++++.+-|...... .......+.|++.++|+.+.+.+
T Consensus 142 l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g~--v~~~~ekp~~~~~~-~~~~~~~~~~~Giy~~~~~~l~~ 218 (420)
T 3brk_X 142 YEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDE--IIDFIEKPADPPGI-PGNEGFALASMGIYVFHTKFLME 218 (420)
T ss_dssp THHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTSB--EEEEEESCSSCCCB-TTBTTEEEEEEEEEEEEHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCCc--EEEeEeCCCccccc-cccccceEEeeeeEEEeHHHHHH
Confidence 22567777777888776665432 122245665543 454 44444433211111 11112346799999999999877
Q ss_pred HHHh
Q 013550 307 LVEA 310 (441)
Q Consensus 307 ~~~~ 310 (441)
.+++
T Consensus 219 ~l~~ 222 (420)
T 3brk_X 219 AVRR 222 (420)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 7643
No 15
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=99.07 E-value=1.9e-09 Score=104.40 Aligned_cols=195 Identities=11% Similarity=0.087 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCc
Q 013550 80 LVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (441)
Q Consensus 80 vavv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~ 156 (441)
+.+|+||||.||||+. ..||+++|+ .|+|++++.++++...+ +.-++....+..+.+.++|.+...+...
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~ll~i-~gkpli~~~l~~l~~~g------i~~i~vv~~~~~~~i~~~~~~~~~l~~~ 75 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLPI-VDKPLIQYAVEEAMEAG------CEVMAIVTGRNKRSLEDYFDTSYEIEHQ 75 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCBS-SSSBHHHHHHHHHHHHT------CCEEEEEECTTHHHHHHHTSCCC-----
T ss_pred eEEEEECCcCCcccCccccCCCcccceE-CCEEHHHHHHHHHHhCC------CCEEEEEecCCHHHHHHHHhcchhhhhh
Confidence 4679999999999987 899999999 79999999999998864 4434444445667788877653211111
Q ss_pred eEEEeeccc---eeeec--CCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCccccccc--
Q 013550 157 IHTFNQSQY---PRLCA--DDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD-- 229 (441)
Q Consensus 157 i~~f~Q~~~---P~~~~--~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~D-- 229 (441)
.. ..++. ..+.. .+ ..+. ......|.|.|+..... ++.+ +-++++|.+.|.+... |
T Consensus 76 l~--~~~~~~~~~~~~~~~~~-~~i~-----~~~~~~~~Gt~~al~~a-----~~~l---~~~~~lv~~~D~~~~~-~~~ 138 (281)
T 3juk_A 76 IQ--GTNKENALKSIRNIIEK-CCFS-----YVRQKQMKGLGHAILTG-----EALI---GNEPFAVILADDLCIS-HDH 138 (281)
T ss_dssp -----CCHHHHHHHHHHHHHH-CEEE-----EEECSSCCCHHHHHHHT-----HHHH---CSSCEEEECTTEEEEC-TTS
T ss_pred hh--cccchhhhhhhhccccC-ccEE-----EEecCCCCCcHHHHHHH-----HHHc---CCCCEEEEeCCeeccC-ccc
Confidence 00 00000 00000 00 0000 01112467887733211 2222 3478999999996544 3
Q ss_pred ---H-HHHHHHHHcCCcceEEEee--eccCCccceEEEEe---CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeee
Q 013550 230 ---L-KILNHLIQNKNEYCMEVTP--KTLADVKGGTLISY---EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVN 300 (441)
Q Consensus 230 ---p-~~lg~~~~~~~~~~~~vv~--k~~~dekgGvl~~~---~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~ 300 (441)
. .++.++.++++ .++.+.. ...+ ..-|++... +|..++.++.|-|... ...-.+.|++.++|+
T Consensus 139 ~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~-~~~g~v~~~~~~~g~~~v~~~~Ekp~~~------~~~~~~~~~GiYi~~ 210 (281)
T 3juk_A 139 PSVLKQMTSLYQKYQC-SIVAIEEVALEEV-SKYGVIRGEWLEEGVYEIKDMVEKPNQE------DAPSNLAVIGRYILT 210 (281)
T ss_dssp CCHHHHHHHHHHHHCS-CEEEEEECCTTTG-GGSEEEEEEEEETTEEEEEEEEESCCTT------TCSCSEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHcCC-CEEEEEEechhhc-ccCCEEEeccCCCCceEEeEEEECcCCC------CCCcceeEEEEEEEC
Confidence 2 45566666666 3333322 2233 334665544 6744566666544321 112346799999999
Q ss_pred HHHHHH
Q 013550 301 LKAIKR 306 (441)
Q Consensus 301 l~~l~~ 306 (441)
-+.++.
T Consensus 211 ~~~l~~ 216 (281)
T 3juk_A 211 PDIFEI 216 (281)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 887743
No 16
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=98.97 E-value=1.6e-08 Score=104.07 Aligned_cols=178 Identities=17% Similarity=0.185 Sum_probs=109.6
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.|||||.+.||.++|+ .|+|++++.++++.... + -.+++.|+.. ++.+.++++++. ..
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~l~~i-~g~pli~~~l~~l~~~~----~-~~i~vv~~~~-~~~i~~~~~~~~---~~-- 75 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKVLHPL-AGKPMVQHVIDAAMKLG----A-QHVHLVYGHG-GELLKKTLADPS---LN-- 75 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEE-TTEEHHHHHHHHHHHHT----C-SCEEEEESSC-HHHHHHHC--------C--
T ss_pred cceEEEECCCCCccCCCCCCcccCee-CCeeHHHHHHHHHHhCC----C-CcEEEEeCCC-HHHHHHHhccCC---cE--
Confidence 68999999999999999899999999 89999999999998763 1 2566666655 667777766431 11
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcc-cchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccHHHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGD-VFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGd-i~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~ 236 (441)
+..| ..+.|.++ ++.++.. + ...+++++.+.|. |... ..+..+
T Consensus 76 ~v~~------------------------~~~~g~~~~i~~~~~~------~--~~~~~~lv~~~D~P~i~~---~~i~~l 120 (459)
T 4fce_A 76 WVLQ------------------------AEQLGTGHAMQQAAPH------F--ADDEDILMLYGDVPLISV---DTLQRL 120 (459)
T ss_dssp EEEC------------------------SSCCCHHHHHHHHGGG------S--CTTSEEEEEETTCTTCCH---HHHHHH
T ss_pred EEeC------------------------CCCCCcHHHHHHHHHh------c--CCCCcEEEEeCCcccCCH---HHHHHH
Confidence 1111 12345544 3322221 1 1358999999999 5433 333333
Q ss_pred HH--cCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 237 IQ--NKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 237 ~~--~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
++ .+.+.++-+++..++.. -|.+...+|+ +.++.+-|+... ......+.|++.++|+-+.+.+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~-~g~v~~~~g~--v~~~~ek~~~~~----~~~~~~~~~~Giy~~~~~~l~~~l~~ 189 (459)
T 4fce_A 121 LAAKPEGGIGLLTVKLDNPSG-YGRIVRENGD--VVGIVEHKDASD----AQREINEINTGILVANGRDLKRWLSL 189 (459)
T ss_dssp HHHCCTTSEEEEEEECSCCTT-SCEEEEETTE--EEEEECGGGCCT----TGGGCCEEEEEEEEEEHHHHHHHHHT
T ss_pred HHHHhhCCEEEEEEecCCCCc-ccEEEeCCCc--EEEEEECCCCCh----HHhhccEEEEEEEEEEHHHHHHHHHH
Confidence 32 23555555566555544 4555555665 444433221110 11123467999999999999887764
No 17
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=98.95 E-value=1.2e-08 Score=100.64 Aligned_cols=205 Identities=14% Similarity=0.102 Sum_probs=122.6
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeC-CCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVR-NGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~-~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
++.+|+||||.||||+. ||.++|+. .|+|++++.++.+...+ + -.++|.+.....+.+.++|.+......++
T Consensus 5 ~~~~vIlAaG~g~R~~~--~K~l~~ig~~g~pli~~~l~~~~~~~----~-~~i~vv~~~~~~~~~~~~~~~~~~~~~~i 77 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS--LKQLDGIGPGGDTIMDYSVYDAIRAG----F-GRLVFVIRHSFEKEFREKILTKYEGRIPV 77 (303)
T ss_dssp CCEEEEECTTCBCTTSS--BCCCCCCSTTSCCHHHHHHHHHHHHT----C-CEEEEEECGGGHHHHHHHTHHHHTTTSCE
T ss_pred ceEEEEECCCCcccCCC--CceEeEcCCCCeeHHHHHHHHHHHCC----C-CeEEEEcCchHHHHHHHHHHHHhccCCcE
Confidence 46789999999999986 89999995 79999999999987753 2 24566666444578888887643334567
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-HHHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-KILNHL 236 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~ 236 (441)
.+..|...- +........ ....|.|+|+....... .+ -+.++|.|.|++...-+. .++.++
T Consensus 78 ~~~~~~~~~-~~~~~~~~~--------~~~~~~Gt~~al~~a~~--~i-------~~~~lV~~gD~l~~~~~~~~l~~~~ 139 (303)
T 3pnn_A 78 ELVFQELDR-LPEGFSCPE--------GREKPWGTNHAVLMGRD--AI-------REPFAVINADDFYGRNGFEVLARKL 139 (303)
T ss_dssp EEEECCTTC-CCTTCCCCT--------TCCSCCCHHHHHHTTTT--TC-------CSCEEEEESSCBCCHHHHHHHHHHH
T ss_pred EEEeccccc-ccccccccc--------cccccCCcHHHHHHHHH--hc-------CCCEEEEECCeecCHHHHHHHHHHH
Confidence 666666321 101111111 11257888874432221 11 256788899997543112 355666
Q ss_pred HH---cCCcceEEEeeeccC-Cccc----eEEEEe-CCee-EEEEeecCChhh----hhhhccC----CCcceEEEeeee
Q 013550 237 IQ---NKNEYCMEVTPKTLA-DVKG----GTLISY-EGKV-QLLEIAQVPDEH----VNEFKSI----EKFKIFNTNNLW 298 (441)
Q Consensus 237 ~~---~~~~~~~~vv~k~~~-dekg----Gvl~~~-~g~~-~lvEysq~~~~~----~~~~~~~----~~~~~fNtnn~~ 298 (441)
.+ +++++++-+.+..++ ...+ |++... +|++ .++|-.+.+.+. ..+.++. ..-.+.|++.+.
T Consensus 140 ~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~ 219 (303)
T 3pnn_A 140 MTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWG 219 (303)
T ss_dssp HTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEE
T ss_pred HHhccccCceEEEEEECCCccCccCceeeeeEeeCCCCcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEE
Confidence 54 467777776666566 5555 666554 5653 234443332110 0000000 134577999999
Q ss_pred eeHHHHHHHH
Q 013550 299 VNLKAIKRLV 308 (441)
Q Consensus 299 ~~l~~l~~~~ 308 (441)
|+-+.+..+.
T Consensus 220 f~~~~~~~l~ 229 (303)
T 3pnn_A 220 FTPDYFDYSE 229 (303)
T ss_dssp ECTHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9998876553
No 18
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=98.93 E-value=1.3e-08 Score=98.99 Aligned_cols=184 Identities=13% Similarity=0.128 Sum_probs=118.9
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||+ .|.++++ .|||++++.++++.... + -.+++.|. ++.+.++++++. .++.
T Consensus 18 ~~~aIIlA~G~stRlp---~K~L~~i-~GkPmi~~~l~~l~~~~----i-~~IvV~t~---~~~i~~~~~~~g---~~v~ 82 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP---GKPLVDI-NGKPMIVHVLERARESG----A-ERIIVATD---HEDVARAVEAAG---GEVC 82 (264)
T ss_dssp CCEEEEECCSCCSSST---TGGGCEE-TTEEHHHHHHHHHHHTT----C-SEEEEEES---CHHHHHHHHHTT---CEEE
T ss_pred ceEEEEEcCCCCCCCC---CcceeeE-CCeEHHHHHHHHHHhCC----C-CEEEEECC---HHHHHHHHHHcC---CEEE
Confidence 5889999999999994 5999999 99999999999988653 2 24556552 578888887653 2322
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
+ . ....|.|.|.+..++. .+...+.+++++.++|+ |....+. .++..+
T Consensus 83 ~-----------------~-------~~~~~~Gt~~i~~~~~------~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~ 132 (264)
T 3k8d_A 83 M-----------------T-------RADHQSGTERLAEVVE------KCAFSDDTVIVNVQGDEPMIPATIIRQVADNL 132 (264)
T ss_dssp E-----------------C-------CTTCCSHHHHHHHHHH------HHTCCTTCEEEEECTTCTTCCHHHHHHHHHHH
T ss_pred E-----------------e-------cCCCCCCHHHHHHHHH------HhccCCCCEEEEEcCCcccCCHHHHHHHHHHH
Confidence 1 1 1125678877654442 23223568999999999 6543222 345555
Q ss_pred HHcCCcceEEEeeeccCCcc-----ceEEEEeCCeeEEEEeecCCh-hhhhhhc---cCCC-cceEEEeeeeeeHHHHHH
Q 013550 237 IQNKNEYCMEVTPKTLADVK-----GGTLISYEGKVQLLEIAQVPD-EHVNEFK---SIEK-FKIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~dek-----gGvl~~~~g~~~lvEysq~~~-~~~~~~~---~~~~-~~~fNtnn~~~~l~~l~~ 306 (441)
.+.++++++-+++-.++++. ++++...+|+ ++.+++=|. ...+.+. .... -.+.|++.+.|+.+++++
T Consensus 133 ~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~--~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~ 210 (264)
T 3k8d_A 133 AQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGY--ALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRR 210 (264)
T ss_dssp HTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTSB--EEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHH
T ss_pred hhcCCCEEEEEEEcCCHHHccCCCceEEEECCCCe--EEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHH
Confidence 56678888777765544332 3566666676 666666331 1121110 0111 235699999999999998
Q ss_pred HHH
Q 013550 307 LVE 309 (441)
Q Consensus 307 ~~~ 309 (441)
...
T Consensus 211 ~~~ 213 (264)
T 3k8d_A 211 YVN 213 (264)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 19
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=98.92 E-value=1.7e-08 Score=103.70 Aligned_cols=179 Identities=17% Similarity=0.153 Sum_probs=104.9
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||+.+.||.++++ .|+|++++.++++.... . -.++|.|+. ..+.+.+++.++ .+.
T Consensus 5 ~~~aiIlA~G~g~Rl~~~~pK~l~~i-~gkpli~~~l~~l~~~~----~-~~iivv~~~-~~~~i~~~~~~~-----~~~ 72 (456)
T 2v0h_A 5 ALSAVILAAGKGTRMYSDLPKVLHTI-AGKPMVKHVIDTAHQLG----S-ENIHLIYGH-GGDLMRTHLANE-----QVN 72 (456)
T ss_dssp CEEEEEECCCCCGGGCSSSCGGGSEE-TTEEHHHHHHHHHHHTT----C-SCEEEEECT-THHHHHHHTTTC-----CCE
T ss_pred cceEEEECCCCCcccCCCCCccccEE-CCccHHHHHHHHHHhCC----C-CcEEEEeCC-CHHHHHHHhhcC-----CcE
Confidence 57889999999999998889999999 89999999999998753 1 245666655 345566655443 122
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC-CCcEEEEEcCCc-ccccccH-HHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVFAANSDN-LGAIVDL-KILNH 235 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~-G~eyi~v~nvDN-L~~~~Dp-~~lg~ 235 (441)
+..| ..+.|.++. ++..+..- ..+++++.+.|. |....+. .++..
T Consensus 73 ~v~~------------------------~~~~g~~~~--------~~~~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~ 120 (456)
T 2v0h_A 73 WVLQ------------------------TEQLGTAHA--------VQQAAPFFKDNENIVVLYGDAPLITKETLEKLIEA 120 (456)
T ss_dssp EEEC------------------------SCCCCHHHH--------HHHHGGGCCTTSEEEEEETTCTTCCHHHHHHHHHH
T ss_pred EEeC------------------------CCCCCcHHH--------HHHHHHhcCCCCeEEEEcCCcceeCHHHHHHHHHH
Confidence 1110 124455441 22222111 257999999999 5543232 22222
Q ss_pred HHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 236 ~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
+. ..++++-+++..++.. -|.+...+|+ +.++.+=|+..... ......|++.+.|+.+.|.+.++.
T Consensus 121 ~~--~~~~~~~~~~~~~~~~-~g~v~~~~g~--v~~~~ek~~~~~~~----~~~~~~~~Giy~~~~~~l~~~l~~ 186 (456)
T 2v0h_A 121 KP--ENGIALLTVNLDNPTG-YGRIIRENGN--VVAIVEQKDANAEQ----LNIKEVNTGVMVSDGASFKKWLAR 186 (456)
T ss_dssp CC--TTSEEEEEEECSSCTT-SCEEEEETTE--EEEEECTTTCCHHH----HTCCEEEEEEEEEEHHHHHHHHTT
T ss_pred Hh--cCCEEEEEeecCCCCc-cceEEEcCCc--EEEEEECCCCChhH----hcCcEEEEEEEEEEHHHHHHHHHH
Confidence 21 2455555555545433 3444433665 33333322110000 123467999999999988777753
No 20
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=98.90 E-value=2.1e-08 Score=98.59 Aligned_cols=179 Identities=15% Similarity=0.127 Sum_probs=110.4
Q ss_pred CeEEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcC-EEEeeCCCChhHHHHHHHHhCCCC
Q 013550 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVP-LLLMNSFNTHDDTSKIIEKYSKSN 154 (441)
Q Consensus 79 kvavv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iP-l~IMtS~~T~e~T~~~l~~~~~~~ 154 (441)
++.+|+||||.||||+ ...||.++|+ .|+|++++.++.+...+ +. ++|.|+....+.+.+++.+...++
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi-~gkpli~~~l~~l~~~g------i~~I~vv~~~~~~~~i~~~l~~g~~~g 74 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPV-YDKPMIYYPLSTLMLAG------IREILIISTPQDTPRFQQLLGDGSNWG 74 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEE-TTEETTHHHHHHHHHTT------CCEEEEEECTTTHHHHHHHHTTSGGGT
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeE-CCEeHHHHHHHHHHHCC------CCEEEEEeccccHHHHHHHHhcccccC
Confidence 3568999999999998 3679999999 88999999999987642 33 455676666777778776522122
Q ss_pred CceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HH
Q 013550 155 VEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KI 232 (441)
Q Consensus 155 ~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~ 232 (441)
.++.+.. ...|.|.++.+..- ++.+ +-+.+++.+.|| +.. .+. .+
T Consensus 75 ~~i~~~~------------------------~~~~~G~~~al~~a-----~~~i---~~~~~~lv~gD~~~~~-~~l~~~ 121 (293)
T 1fxo_A 75 LDLQYAV------------------------QPSPDGLAQAFLIG-----ESFI---GNDLSALVLGDNLYYG-HDFHEL 121 (293)
T ss_dssp CEEEEEE------------------------CSSCCCGGGHHHHT-----HHHH---TTSEEEEEETTEEEEC-TTHHHH
T ss_pred ceEEEee------------------------CCCCCCHHHHHHHH-----HHHh---CCCCEEEEECChhccC-ccHHHH
Confidence 3332211 11367777644221 1222 235666677999 433 233 45
Q ss_pred HHHHHHcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHH
Q 013550 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (441)
Q Consensus 233 lg~~~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~ 308 (441)
+..+.+.+.+.++-+.+..+|. +.|++.. .+|+ ++++.+-|.. .+-.+.|++.++|+.+.+..+.
T Consensus 122 l~~~~~~~~~~~v~~~~v~dp~-~~g~v~~d~~g~--v~~~~ekp~~--------~~s~~~~~Giy~~~~~~l~~~~ 187 (293)
T 1fxo_A 122 LGSASQRQTGASVFAYHVLDPE-RYGVVEFDQGGK--AISLEEKPLE--------PKSNYAVTGLYFYDQQVVDIAR 187 (293)
T ss_dssp HHHHHTCCSSEEEEEEECSCGG-GSEEEEECTTSC--EEEEEESCSS--------CSSSEEEEEEEEECTTHHHHHH
T ss_pred HHHHHhcCCCcEEEEEECCCcc-cCcEEEECCCCc--EEEEEECCCC--------CCCCeEEEEEEEEcHHHHHHHH
Confidence 6666555666666555555554 4566654 3555 3344333321 1224789999999998876553
No 21
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=98.85 E-value=3.1e-08 Score=97.67 Aligned_cols=179 Identities=13% Similarity=0.065 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCc
Q 013550 80 LVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (441)
Q Consensus 80 vavv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~ 156 (441)
+.+|+||||.||||+ ...||.++|+ .|+|++++.++.+.... + -.++|.|+....+.+.+++.+...++.+
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi-~gkpli~~~l~~l~~~g----i-~~I~vv~~~~~~~~i~~~l~~g~~~g~~ 77 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPI-YDKPMIYYPLSVLMLAG----I-REILIITTPEDKGYFQRLLGDGSEFGIQ 77 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEE-TTEETTHHHHHHHHHTT----C-CEEEEEECTTTHHHHHHHHTTSGGGTCE
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEE-CCeeHHHHHHHHHHhCC----C-CcEEEEechhHHHHHHHHHhcccccCce
Confidence 568999999999998 5789999999 78999999999987642 2 1355566666667777777652212233
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccHHHHHH
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNH 235 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~ 235 (441)
+.+..| ..|.|.++.+..- ++.+ +-+.+.+.+.|| +....-..++..
T Consensus 78 i~~~~~------------------------~~~~G~~~al~~a-----~~~i---~~~~~~lv~gD~~~~~~~l~~~l~~ 125 (296)
T 1mc3_A 78 LEYAEQ------------------------PSPDGLAQAFIIG-----ETFL---NGEPSCLVLGDNIFFGQGFSPKLRH 125 (296)
T ss_dssp EEEEEC------------------------SSCCCSTHHHHHT-----HHHH---TTSCEEEEETTEEEECSSCHHHHHH
T ss_pred EEEecc------------------------CCCCCHHHHHHHH-----HHHh---CCCCEEEEECCccccccCHHHHHHH
Confidence 322111 1466777633211 1222 223445555999 433222345555
Q ss_pred HHHcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 236 LIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 236 ~~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
+.+.+.+.++-+++..+|. ..|++.. .+|+ ++.+.+-|.. .+-.+.|++.++|+.+.++.+
T Consensus 126 ~~~~~~~~~v~~~~v~dp~-~yg~v~~d~~g~--v~~~~ekp~~--------~~s~~~~~Giy~~~~~~l~~~ 187 (296)
T 1mc3_A 126 VAARTEGATVFGYQVMDPE-RFGVVEFDDNFR--AISLEEKPKQ--------PKSNWAVTGLYFYDSKVVEYA 187 (296)
T ss_dssp HTTCCSSEEEEEEECSCCS-SSBBCEEETTEE--EEECCBSCSS--------CSCSEEEEEEEECCTHHHHHH
T ss_pred HHHcCCCCEEEEEECCCcc-cCCEEEECCCCc--EEEEEECCCC--------CCCCEEEEEEEEEcHHHHHHH
Confidence 5555566665555555554 4555543 3443 5555443321 122477999999999887554
No 22
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=98.83 E-value=5.4e-08 Score=95.87 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCc-CEEEeeCCCChhHHHHHHHHhCCCCC
Q 013550 80 LVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTHDDTSKIIEKYSKSNV 155 (441)
Q Consensus 80 vavv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~i-Pl~IMtS~~T~e~T~~~l~~~~~~~~ 155 (441)
+.+|+||||.||||+ ...||.++|+ .|+|++++.++.+...+ + .++|.|+....+.+.+++.+...++.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi-~gkpli~~~l~~l~~~g------i~~Iivv~~~~~~~~i~~~l~~g~~~g~ 76 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPI-YDKPMIYYPLSVLMLAG------IRDILIISTPRDLPLYRDLLGDGSQFGV 76 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEE-TTEETTHHHHHHHHHTT------CCEEEEEECTTTHHHHHHHHTTSGGGTS
T ss_pred eEEEEECCCCCCccccccCCCCceecEE-CCeeHHHHHHHHHHHCC------CCeEEEEeccchHHHHHHHhhhccccCc
Confidence 568899999999999 4789999999 78999999999988642 3 35555666666777777765221223
Q ss_pred ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHH
Q 013550 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KIL 233 (441)
Q Consensus 156 ~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~l 233 (441)
++.+..| ..|.|.++.+..- ++.+ +-+.+.+.+.|| +.. .+. .++
T Consensus 77 ~i~~~~~------------------------~~~~G~~~al~~a-----~~~i---~~~~~~lv~gD~~~~~-~~l~~~l 123 (295)
T 1lvw_A 77 RFSYRVQ------------------------EEPRGIADAFIVG-----KDFI---GDSKVALVLGDNVFYG-HRFSEIL 123 (295)
T ss_dssp EEEEEEC------------------------SSCCCGGGHHHHT-----HHHH---TTSCEEEEETTCCEEC-TTHHHHH
T ss_pred eEEEeeC------------------------CCCCChHHHHHHH-----HHHh---CCCcEEEEECCccccC-cCHHHHH
Confidence 3322111 1366777644221 1222 223344555999 433 233 455
Q ss_pred HHHHHcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHH
Q 013550 234 NHLIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (441)
Q Consensus 234 g~~~~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~ 308 (441)
..+.+.+.+.++-+++..+|. +.|++.. .+|+ ++.+.+-|.. .+-.+.|++.++|+.+.++.+.
T Consensus 124 ~~~~~~~~~~~v~~~~v~dp~-~~g~v~~d~~g~--v~~~~ekp~~--------~~s~~~~~Giy~f~~~~l~~~~ 188 (295)
T 1lvw_A 124 RRAASLEDGAVIFGYYVRDPR-PFGVVEFDSEGR--VISIEEKPSR--------PKSNYVVPGLYFYDNQVVEIAR 188 (295)
T ss_dssp HHHHTCCSSEEEEEEECSCCT-TSEEEEECTTSB--EEEEEESCSS--------CSCSEECCSEEEECTTHHHHHH
T ss_pred HHHHHcCCCcEEEEEECCCcc-cCCEEEECCCCc--EEEEEECCCC--------CCCCEEEEEeEEEcHHHHHHHH
Confidence 555555566655555555554 4565543 3455 3333333321 1123779999999988876543
No 23
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=98.83 E-value=1.8e-08 Score=95.85 Aligned_cols=189 Identities=14% Similarity=0.145 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCc
Q 013550 80 LVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVE 156 (441)
Q Consensus 80 vavv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~ 156 (441)
+.+|+||||.||||+. +.||.++|+ .|+|++++.++++.+.+ + -.++|.|+. .++.+.++++++.....+
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i-~gkpli~~~l~~l~~~g----~-~~i~vv~~~-~~~~i~~~~~~~~~~~~~ 75 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEI-GGKPILWHIMKMYSVHG----I-KDFIICCGY-KGYVIKEYFANYFLHMSD 75 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEE-TTEEHHHHHHHHHHHTT----C-CEEEEEECT-THHHHHHHHHTHHHHHSC
T ss_pred cEEEEECCCCcccCCCccCCCCccccEE-CCEEHHHHHHHHHHHCC----C-CEEEEEccc-CHHHHHHHHhhccccccc
Confidence 5678999999999986 779999999 89999999999988753 1 245666654 457888998764210012
Q ss_pred eEEEeeccceeeecCCCcccCCCCCCCcc----ccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH-H
Q 013550 157 IHTFNQSQYPRLCADDFVPLPCKGKTDKD----GWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL-K 231 (441)
Q Consensus 157 i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~----~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp-~ 231 (441)
+.+..|+. .+. .+.....+..+ .-.+.|+|+...+... .++ +-++++|.+.|++... |. .
T Consensus 76 ~~~~~~~~--~~~-----~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~--~~~-----~~~~~lv~~~D~~~~~-~~~~ 140 (259)
T 1tzf_A 76 VTFHMAEN--RME-----VHHKRVEPWNVTLVDTGDSSMTGGRLKRVAE--YVK-----DDEAFLFTYGDGVADL-DIKA 140 (259)
T ss_dssp EEEEGGGT--EEE-----ETTCCCCCCEEEEEECCSSCCHHHHHHHTGG--GTT-----TSSCEEEEETTEEECC-CHHH
T ss_pred cccccccc--cee-----eeeccccccceeeeecccccCcHHHHHHHHH--hcC-----CCCcEEEEECCEeccc-CHHH
Confidence 33333322 000 00000000111 1246788774432211 111 3478899999996443 33 5
Q ss_pred HHHHHHHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHH
Q 013550 232 ILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAI 304 (441)
Q Consensus 232 ~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l 304 (441)
++.++.++++++.+..+ ..+. ..|.+...+|+ ++++.+-|.. ...+.|++.++|+.+.+
T Consensus 141 ~~~~~~~~~~~~t~~~~--~~~~-~~g~v~~~~g~--v~~~~ekp~~---------~~~~~~~Giy~~~~~~l 199 (259)
T 1tzf_A 141 TIDFHKAHGKKATLTAT--FPPG-RFGALDIQAGQ--VRSFQEKPKG---------DGAMINGGFFVLNPSVI 199 (259)
T ss_dssp HHHHHHHHCCSEEEEEE--CCCC-CSEEEEEETTE--EEEEEESCSC---------CSCCEECCCEEECGGGG
T ss_pred HHHHHHHhCCeEEEEEe--cCCC-CccEEEEcCCE--EEEEEecCCC---------CCceEEEEEEEeCHHHH
Confidence 66677666776654332 2333 34655544664 4555543321 12367999999998766
No 24
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=98.81 E-value=3.8e-08 Score=97.09 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=104.7
Q ss_pred CeEEEEEcCCCCCcCC--C--CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCC
Q 013550 79 KLVVLKLNGGLGTTMG--C--TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSN 154 (441)
Q Consensus 79 kvavv~LaGGlGTRLG--~--~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~ 154 (441)
++.+|+||||.||||+ . +.||+++|+..|+|++++.++++... + -.++|.|+....+.+.++++++ ++
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~-----~-~~i~vv~~~~~~~~i~~~~~~~--~~ 75 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL-----V-DETLIVCNEKHYFLALEEIKNE--IK 75 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT-----C-SEEEEEEEGGGHHHHHHHTTTT--CS
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc-----C-CCEEEEEChhHHHHHHHHHHHh--hC
Confidence 4678999999999996 2 57999999966999999999998764 1 2567777765456777777652 11
Q ss_pred C-ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCccccccc-H-H
Q 013550 155 V-EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVD-L-K 231 (441)
Q Consensus 155 ~-~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~D-p-~ 231 (441)
. ++.+..| ..|.|+|+...... +.+ ..-++++|.+.|.+....| . .
T Consensus 76 ~~~~~~i~~------------------------~~~~gt~~al~~a~-----~~l--~~~~~~lv~~~D~~~~~~~~~~~ 124 (308)
T 2qh5_A 76 NKSVGFLLE------------------------SLSKNTANAIALSA-----LMS--DKEDLLIVTPSDHLIKDLQAYEN 124 (308)
T ss_dssp SCEEEEEEE------------------------SSCCCHHHHHHHHH-----HTS--CTTSEEEEEESSCBCCCHHHHHH
T ss_pred CCccEEEeC------------------------CCCCChHHHHHHHH-----HHh--CCCCeEEEEcCCccccCHHHHHH
Confidence 2 2222111 13567777432211 111 1235799999999652223 2 3
Q ss_pred HHHH---HHHcCCcceEEEeeeccCCccceEEEEe-CCeeEEEEeecCChhh-hhhhccCCCcceEEEeeeeeeHHHHHH
Q 013550 232 ILNH---LIQNKNEYCMEVTPKTLADVKGGTLISY-EGKVQLLEIAQVPDEH-VNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 232 ~lg~---~~~~~~~~~~~vv~k~~~dekgGvl~~~-~g~~~lvEysq~~~~~-~~~~~~~~~~~~fNtnn~~~~l~~l~~ 306 (441)
++.. +.++++++++.+.+ +.+...-|++... +|+ ++++.+-|... .+.+.. .+-.+.|++.++|+.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~t~~~~~-~~~~~~~g~i~~d~~~~--V~~~~Ekp~~~~~~~~~~-~g~~~~n~Giy~~~~~~ll~ 200 (308)
T 2qh5_A 125 AIKKAIDLAQKGFLVTFGVSI-DKPNTEFGYIESPNGLD--VKRFIEKPSLDKAIEFQK-SGGFYFNSGMFVFQAGVFLD 200 (308)
T ss_dssp HHHHHHHHHHTTCEEEEEEEC-SSCCTTSEEEECSSSSB--CSEEEESCCHHHHHHHHH-HCCEEEEEEEEEEEHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEec-CCCCCCceEEEECCCCE--EEEEEECCChHHHHHHhh-cCCeEEEeEEEEEEHHHHHH
Confidence 4444 44556666665544 3444456766543 344 44444434321 111100 11236799999999888766
Q ss_pred HHHh
Q 013550 307 LVEA 310 (441)
Q Consensus 307 ~~~~ 310 (441)
.+++
T Consensus 201 ~l~~ 204 (308)
T 2qh5_A 201 ELKK 204 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 25
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=98.80 E-value=9.9e-08 Score=92.31 Aligned_cols=184 Identities=11% Similarity=0.113 Sum_probs=110.8
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||+ ||.++++ .|||++++.++++...+ + -.++|-|. ++.+.++++++. .++.
T Consensus 9 ~~~aIIlA~G~stRl~---~K~L~~i-~GkPli~~~l~~l~~~~----i-~~VvVvt~---~~~i~~~~~~~g---~~v~ 73 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP---GKALVDI-AGKPMIQHVYESAIKSG----A-EEVVIATD---DKRIRQVAEDFG---AVVC 73 (256)
T ss_dssp CCEEEEECCCC---CT---TGGGCEE-TTEEHHHHHHHHHHHTT----C-SEEEEEES---CHHHHHHHHHTT---CEEE
T ss_pred CceEEEEcCCCCCCCC---CCCeeeE-CCchHHHHHHHHHHhCC----C-CEEEEECC---HHHHHHHHHHcC---CeEE
Confidence 6889999999999997 9999999 99999999999988642 2 13455553 578888887643 2332
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
+ . ....|.|.+.++.++. .+...+.+++++.++|+ |....+. .++..+
T Consensus 74 ~-----------------~-------~~~~~~Gt~~i~~a~~------~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~ 123 (256)
T 3tqd_A 74 M-----------------T-------SSDHQSGTERIAEAAV------ALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDL 123 (256)
T ss_dssp E-----------------C-------CTTCCSHHHHHHHHHH------HTTCCTTCEEEEECTTCCCCCHHHHHHHHHHH
T ss_pred E-----------------e-------CCCCCCcHHHHHHHHH------HhCcCCCCEEEEEeCCcccCCHHHHHHHHHHH
Confidence 1 1 1125678777655442 22113568999999999 6533222 344445
Q ss_pred HHc-CCcceEEEeeeccCCc-----cceEEEEeCCeeEEEEeecCCh-hhhhhhc-----cCCCcceEEEeeeeeeHHHH
Q 013550 237 IQN-KNEYCMEVTPKTLADV-----KGGTLISYEGKVQLLEIAQVPD-EHVNEFK-----SIEKFKIFNTNNLWVNLKAI 304 (441)
Q Consensus 237 ~~~-~~~~~~~vv~k~~~de-----kgGvl~~~~g~~~lvEysq~~~-~~~~~~~-----~~~~~~~fNtnn~~~~l~~l 304 (441)
.++ +++++.-+++-+++++ -+++++..+|+ ++.+++=|- ...+.+. ....-.+-|++.|.|+.++|
T Consensus 124 ~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~--~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l 201 (256)
T 3tqd_A 124 DEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNY--ALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFL 201 (256)
T ss_dssp HHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSB--EEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHH
T ss_pred HhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCE--EeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHH
Confidence 443 5566655554322211 25677766776 555555321 1111110 00112356999999999999
Q ss_pred HHHHH
Q 013550 305 KRLVE 309 (441)
Q Consensus 305 ~~~~~ 309 (441)
++..+
T Consensus 202 ~~~~~ 206 (256)
T 3tqd_A 202 EEYLS 206 (256)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98875
No 26
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=98.78 E-value=3.9e-08 Score=101.62 Aligned_cols=181 Identities=14% Similarity=0.138 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceEE
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIHT 159 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~~ 159 (441)
..+|+||||.||||+.+.||.++|+ .|+|++++.++++.... + -.++|.|+.. .+.+.+++++ .+.+
T Consensus 12 ~~~vIlAaG~g~R~~~~~pK~l~~i-~gkpli~~~l~~l~~~g----~-~~iivv~~~~-~~~i~~~~~~------~i~~ 78 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKSDLPKVLHKV-AGISMLEHVFRSVGAIQ----P-EKTVTVVGHK-AELVEEVLAG------QTEF 78 (468)
T ss_dssp EEEEEECCCCCGGGCCSSCGGGSEE-TTEEHHHHHHHHHHTTC----C-SEEEEEECTT-HHHHHHSSSS------SSEE
T ss_pred CcEEEEcCCCCccCCCCCCcEeeEE-CCccHHHHHHHHHHhcC----C-CCEEEEECCC-HHHHHHHhCC------CcEE
Confidence 4578999999999998889999999 89999999999987652 1 2455555543 4444444332 1211
Q ss_pred EeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHHH
Q 013550 160 FNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHLI 237 (441)
Q Consensus 160 f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~ 237 (441)
+ .+ ..+.|.++...+ .++.+. ..-+++++.+.|. |....+. .++..+.
T Consensus 79 --------v-------~~---------~~~~G~~~sl~~-----a~~~~~-~~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 128 (468)
T 1hm9_A 79 --------V-------TQ---------SEQLGTGHAVMM-----TEPILE-GLSGHTLVIAGDTPLITGESLKNLIDFHI 128 (468)
T ss_dssp --------E-------EC---------SSCCCHHHHHHT-----THHHHT-TCCSEEEEEETTCTTCCHHHHHHHHHHHH
T ss_pred --------E-------eC---------CccCChHHHHHH-----HHHHhc-cCCCeEEEEeCCccccCHHHHHHHHHHHH
Confidence 1 00 124565553211 123332 2257999999999 5443333 4556666
Q ss_pred HcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHHHHh
Q 013550 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (441)
Q Consensus 238 ~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~~ 310 (441)
+.++++++-+.+...+.. .|.+.. .+|+ +.++.+-|...- ......+.|++.++|+.+.|.+.+++
T Consensus 129 ~~~~~~~i~~~~~~~~~~-~g~v~~d~~g~--v~~~~ek~~~~~----~~~~~~~~~~Giy~f~~~~l~~~l~~ 195 (468)
T 1hm9_A 129 NHKNVATILTAETDNPFG-YGRIVRNDNAE--VLRIVEQKDATD----FEKQIKEINTGTYVFDNERLFEALKN 195 (468)
T ss_dssp HTTCSEEEEEEECSCCTT-SCEEEECTTCC--EEEEECTTTCCT----TGGGCCEEEEEEEEEEHHHHHHHHTT
T ss_pred hcCCcEEEEEeccCCCCc-eeEEEECCCCC--EEEEEECCCCCh----HHhcCeEEEEEEEEEEHHHHHHHHHh
Confidence 778888776666555544 444443 3454 445544332100 01123467999999999988777653
No 27
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=98.74 E-value=8.7e-08 Score=93.79 Aligned_cols=199 Identities=11% Similarity=0.116 Sum_probs=107.3
Q ss_pred CeEEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCC
Q 013550 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~ 155 (441)
.+.+|+||||.||||+. +.||.++|+ .|+|++++.++++...+ + -.++|.|+. ..+.+.+++.+......
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i-~gkpli~~~l~~l~~~g----i-~~i~vv~~~-~~~~i~~~~~~~~~l~~ 80 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPL-VDKPLIQYVVNECIAAG----I-TEIVLVTHS-SKNSIENHFDTSFELEA 80 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEE-TTEEHHHHHHHHHHHTT----C-CEEEEEECG-GGHHHHHHHSCCHHHHH
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEE-CCeEHHHHHHHHHHHCC----C-CEEEEEeCC-CHHHHHHHHhcchhhhh
Confidence 46789999999999985 679999999 89999999999998653 2 135555654 46778887764100000
Q ss_pred ceE-EEeeccceeee---cCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccc----c
Q 013550 156 EIH-TFNQSQYPRLC---ADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGA----I 227 (441)
Q Consensus 156 ~i~-~f~Q~~~P~~~---~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~----~ 227 (441)
.+. .-....++-+. ..+. .+. ...+..|.|.|+....- ++.+ +-++++|.+.|++.. .
T Consensus 81 ~l~~~~~~~~l~~~~~~~~~~~-~i~-----~~~~~~~~Gt~~al~~a-----~~~~---~~~~~lv~~~D~~~~~~~~~ 146 (302)
T 2e3d_A 81 MLEKRVKRQLLDEVQSICPPHV-TIM-----QVRQGLAKGLGHAVLCA-----HPVV---GDEPVAVILPDVILDEYESD 146 (302)
T ss_dssp HHC----CHHHHHHHHTSCTTC-EEE-----EEECSSCCCHHHHHHHT-----HHHH---CSSCEEEECTTEEECTTSSC
T ss_pred hhhhccchhhhhhhhhccccCc-ceE-----EeeCCccCCHHHHHHHH-----HHHc---CCCcEEEEcCCccccCcccc
Confidence 000 00000000000 0000 000 01112466777733211 1222 236899999999644 1
Q ss_pred c---cH-HHHHHHHHcCCcceEEEeeeccCCccceEEEE-----eCC-eeEEEEeecCChhhhhhhccCCCcceEEEeee
Q 013550 228 V---DL-KILNHLIQNKNEYCMEVTPKTLADVKGGTLIS-----YEG-KVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNL 297 (441)
Q Consensus 228 ~---Dp-~~lg~~~~~~~~~~~~vv~k~~~dekgGvl~~-----~~g-~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~ 297 (441)
. |. .++.++.++++ .++-+.+. ......|++.. .+| -..+.++.+-|... .....+.|++.+
T Consensus 147 ~~~~~l~~l~~~~~~~~~-~~i~~~~~-~~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~------~~~~~~~~~Giy 218 (302)
T 2e3d_A 147 LSQDNLAEMIRRFDETGH-SQIMVEPV-ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKAD------VAPSNLAIVGRY 218 (302)
T ss_dssp TTTSTHHHHHHHHHHHCC-EEEEEEEC-SCGGGSEEEECTTCCCCTTCEEEECEEEESCCTT------TCSCSEEEEEEE
T ss_pred chHHHHHHHHHHHHhcCC-cEEEEEEc-cCCCCccEEEecccccCCCCceeEEEEEECCCCC------ccccceEEEEEE
Confidence 2 33 45566666665 44444333 33344566653 345 22444444433211 112246799999
Q ss_pred eeeHHHHHH
Q 013550 298 WVNLKAIKR 306 (441)
Q Consensus 298 ~~~l~~l~~ 306 (441)
+|+.+.++.
T Consensus 219 i~~~~~l~~ 227 (302)
T 2e3d_A 219 VLSADIWPL 227 (302)
T ss_dssp EECTTHHHH
T ss_pred EECHHHHHH
Confidence 999886643
No 28
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=98.70 E-value=3.3e-07 Score=87.84 Aligned_cols=182 Identities=11% Similarity=0.121 Sum_probs=108.1
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||| +|.++++ .|+|++++.++++.... . -.+++.|.. +.+.++++++. ..+.
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~~-~gkpli~~~l~~l~~~~----~-~~ivvv~~~---~~i~~~~~~~~---~~~~ 66 (262)
T 1vic_A 2 SFTVIIPARFASSRLP---GKPLADI-KGKPMIQHVFEKALQSG----A-SRVIIATDN---ENVADVAKSFG---AEVC 66 (262)
T ss_dssp CCEEEEECCCCCSSST---TGGGCEE-TTEEHHHHHHHHHHHTT----C-SEEEEEESC---HHHHHHHHHTT---CEEE
T ss_pred CcEEEEEcCCCCCCCC---CCccccC-CCeEHHHHHHHHHHhCC----C-ceEEEECCc---HHHHHHHHhcC---CEEE
Confidence 4678999999999996 5999999 89999999999998753 2 245666643 56777777642 2221
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
.+ + +..|.|.|.+. +++..+...+.++++|.+.|. +....+. .++..+
T Consensus 67 --~~----------------~------~~~~~g~~~~~------~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 116 (262)
T 1vic_A 67 --MT----------------S------VNHNSGTERLA------EVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNL 116 (262)
T ss_dssp --EC----------------C------CSSCCHHHHHH------HHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred --EC----------------C------ccccCChHHHH------HHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHH
Confidence 10 0 11355665332 223333223568999999999 5543232 455555
Q ss_pred HHcCCcceEEEeeeccC----C-ccceEEEEeCCeeEEEEeec--CChhhhhh--------hccCCCcceEEEeeeeeeH
Q 013550 237 IQNKNEYCMEVTPKTLA----D-VKGGTLISYEGKVQLLEIAQ--VPDEHVNE--------FKSIEKFKIFNTNNLWVNL 301 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~----d-ekgGvl~~~~g~~~lvEysq--~~~~~~~~--------~~~~~~~~~fNtnn~~~~l 301 (441)
.+.++++++-+++..++ . ..+.++...+|++ +.+++ +|.. .+. ..........|++.++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v--~~f~~~~~~~~-r~~~~~~~~~~~~~~p~~~~~~~giy~~~~ 193 (262)
T 1vic_A 117 AKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYV--LYFSRSVIPYD-RDQFMNLQDVQKVQLSDAYLRHIGIYAYRA 193 (262)
T ss_dssp HHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTSBE--EEEESSCSSCC-HHHHTTCSCGGGCCCCTTCEEEEEEEEEEH
T ss_pred HhcCCCEEEEEEecCCHHHhcCCCceEEEECCCCCE--eeeecCCCCcC-CccccccccccccccccceEEEEEEEEeeH
Confidence 66677776666655432 1 1122333345653 33433 2211 111 0011112356999999999
Q ss_pred HHHHHHH
Q 013550 302 KAIKRLV 308 (441)
Q Consensus 302 ~~l~~~~ 308 (441)
+++....
T Consensus 194 ~~l~~~~ 200 (262)
T 1vic_A 194 GFIKQYV 200 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888754
No 29
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=98.70 E-value=2.6e-07 Score=87.06 Aligned_cols=176 Identities=6% Similarity=0.042 Sum_probs=106.2
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||+ ||.++++ .|+|++++.++++.... .--.+++.|+. +.+.++++++. ..+.
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~l~~i-~g~pli~~~i~~~~~~~----~~~~ivvv~~~---~~i~~~~~~~~---~~~~ 67 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKPLLDI-VGKPMIQHVYERALQVA----GVAEVWVATDD---PRVEQAVQAFG---GKAI 67 (245)
T ss_dssp CEEEEEECCSCCSSST---TGGGCEE-TTEEHHHHHHHHHHTCT----TCCEEEEEESC---HHHHHHHHHTT---CEEE
T ss_pred CeEEEEEcCCcCCCCC---CCccccc-CCchHHHHHHHHHHhCC----CCCeEEEECCc---HHHHHHHHHcC---CeEE
Confidence 5788999999999997 9999999 89999999999988753 11256666653 77888887652 2221
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
. . + ...+.|.++++.++. ..+.+++++.++|. +....+. .++..+
T Consensus 68 ~-----------------~-~------~~~~~g~~~~~~~~~---------~~~~~~~lv~~~D~P~~~~~~i~~l~~~~ 114 (245)
T 1h7e_A 68 M-----------------T-R------NDHESGTDRLVEVMH---------KVEADIYINLQGDEPMIRPRDVETLLQGM 114 (245)
T ss_dssp E-----------------C-C------SCCSSHHHHHHHHHH---------HSCCSEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred e-----------------C-C------CccCCcHHHHHHHHH---------hCCCCEEEEEcCCcCcCCHHHHHHHHHHH
Confidence 1 0 0 113455555554332 22568999999999 5433222 345555
Q ss_pred HHc-CCcceEEEeeeccCC-----ccceEEEEeCCeeEEEEeec--CChhhhhhhccCCCcceEEEeeeeeeHHHHHHHH
Q 013550 237 IQN-KNEYCMEVTPKTLAD-----VKGGTLISYEGKVQLLEIAQ--VPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (441)
Q Consensus 237 ~~~-~~~~~~~vv~k~~~d-----ekgGvl~~~~g~~~lvEysq--~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~ 308 (441)
.++ ++++++-+++. ++. ...+++...+|++. .+.+ .|.. .++ . ..-.+.|++.++|+.+.+.+.+
T Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~-r~~--~-~~~~~~~~g~y~~~~~~l~~~~ 187 (245)
T 1h7e_A 115 RDDPALPVATLCHAI-SAAEAAEPSTVKVVVNTRQDAL--YFSRSPIPYP-RNA--E-KARYLKHVGIYAYRRDVLQNYS 187 (245)
T ss_dssp HHCTTCCEEEEEEEE-CHHHHTCTTSCEEEECTTCBEE--EEESSCSSCC-TTG--G-GCCEEEEEEEEEEEHHHHHHGG
T ss_pred HhCCCCCEEEEeecC-CHHHhcCCCCcEEEECCCCcEE--EeecCCCCCC-ccc--c-cCceeEEEEEEEcCHHHHHHHH
Confidence 556 67776665554 211 12233334556533 3332 2211 110 0 0112459999999999887765
No 30
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=98.66 E-value=4.6e-07 Score=84.65 Aligned_cols=174 Identities=11% Similarity=0.105 Sum_probs=103.6
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||+ ||.++|+ .|+|++++.++++... + -.++|.|.. +.+.++++++ .++.
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~i-~g~pli~~~l~~~~~~-----~-~~i~v~~~~---~~i~~~~~~~----~~~~ 64 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKPLKNL-LGKPLIRWVVEGLVKT-----G-ERVILATDS---ERVKEVVEDL----CEVF 64 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGGGCEE-TTEEHHHHHHHHHHTT-----T-SCEEEEESC---HHHHHHHTTT----SEEE
T ss_pred ceEEEEEcCCCCCCCC---CCcceeE-CCEEHHHHHHHHHHHh-----C-CEEEEECCh---HHHHHHHHhc----eEEE
Confidence 4678999999999998 9999999 8999999999998764 1 245666653 6666666542 2222
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
. . ....+.|.|+++.++. ..+.+++++.++|. +....+. .++..+
T Consensus 65 ~-----------------~-------~~~~~~g~~~~~~~~~---------~~~~~~vlv~~~D~P~~~~~~i~~l~~~~ 111 (234)
T 2y6p_A 65 L-----------------T-------PSDLPSGSDRVLYVVR---------DLDVDLIINYQGDEPFVYEEDIKLIFREL 111 (234)
T ss_dssp E-----------------C-------CTTCCSHHHHHHHHHT---------TCCCSEEEECCTTCCCCCHHHHHHHHHHH
T ss_pred E-----------------C-------CcccccchHHHHHHHH---------hCCCCEEEEecCCcCcCCHHHHHHHHHHH
Confidence 1 0 0123567777554432 22468999999999 7653333 345555
Q ss_pred HHcCCcceEEEeeec----cCCccceEEEEeCCeeEEEEeecCChh-hhhhhccCCCcceEEEeeeeeeHHHHHHHHH
Q 013550 237 IQNKNEYCMEVTPKT----LADVKGGTLISYEGKVQLLEIAQVPDE-HVNEFKSIEKFKIFNTNNLWVNLKAIKRLVE 309 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~----~~dekgGvl~~~~g~~~lvEysq~~~~-~~~~~~~~~~~~~fNtnn~~~~l~~l~~~~~ 309 (441)
.+.+ +.+.-+.... .+ ...+++...+|+ ++.+.+-|.. ..+. .+ .. .+.|++.++|+.+.+.++.+
T Consensus 112 ~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~g~--v~~~~e~~~~~~~~~-~~-~~-~~~~~giy~~~~~~l~~~~~ 182 (234)
T 2y6p_A 112 EKGE-RVVTLARKDKEAYERP-EDVKVVLDREGY--ALYFSRSPIPYFRKN-DT-FY-PLKHVGIYGFRKETLMEFGA 182 (234)
T ss_dssp HHTC-SEEEEEEECSGGGGCT-TSCEEEECTTSB--EEEEESSCCSCCSSC-CS-SC-CEEEEEEEEEEHHHHHHHHH
T ss_pred HhCC-CeEEEecCCHHHhcCC-CceEEEEcCCCC--EeeeecCCCCccccc-cc-ce-eeEEEEEEEcCHHHHHHHHh
Confidence 5555 4332222211 22 223443344564 4444443211 0000 01 11 24599999999999988764
No 31
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=98.65 E-value=2.3e-08 Score=96.31 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=97.9
Q ss_pred EEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhC-CCC-Cc
Q 013550 82 VLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS-KSN-VE 156 (441)
Q Consensus 82 vv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~-~~~-~~ 156 (441)
+|+||||.||||+ .+.||+|+|+ .|+|++++.++++... .|. -.++|.+... ++ +.++++++- .+. ..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv-~gkpli~~~l~~l~~~---~gi-~~iivv~~~~-~~-~~~~~~~~~~~~~~~~ 74 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEA-HGQTLFEHSVNSFAAY---FAS-TPFLFIVRNV-YD-TAVFVREKATQLGIKQ 74 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEE-TTEEHHHHHHGGGGGG---TTT-SCEEEEEESS-TT-HHHHHHHHHHHHTCSS
T ss_pred EEEEcCCCCcccccCCCCCCccccEE-CCeEHHHHHHHHHhcc---CCC-ceEEEEECch-hh-hHHHHHHHHHHcCCCC
Confidence 6899999999996 3789999999 8999999999988762 122 2455555543 34 566665531 111 01
Q ss_pred e-EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHH---CCCcEEEEEcCCcccccccHHH
Q 013550 157 I-HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS---QGKEYVFAANSDNLGAIVDLKI 232 (441)
Q Consensus 157 i-~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~---~G~eyi~v~nvDNL~~~~Dp~~ 232 (441)
+ .+. ....|.|+|+..... ++.+.+ .+-+.++|.|+|++....+..-
T Consensus 75 ~~~~~------------------------~~~~~~Gt~~av~~a-----~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~ 125 (255)
T 4evw_A 75 FYIAE------------------------LHTETRGQAETVTLG-----LEELAKQGVDYQGSITVFNIDTFRPNFVFPD 125 (255)
T ss_dssp EEEEE------------------------ESSCCSSHHHHHHHH-----HHHHHHTTCCCCSCEEECCTTEECTTCCCCG
T ss_pred ceEEE------------------------eCCCCCCHHHHHHHH-----HHHHhhcccCCCCcEEEEeCCEEEecchhHH
Confidence 1 111 112567887733221 222321 2456799999999653222211
Q ss_pred HHHHHHcCCcceEEEeeeccCCccceEEEEe-CCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHH
Q 013550 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISY-EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK 302 (441)
Q Consensus 233 lg~~~~~~~~~~~~vv~k~~~dekgGvl~~~-~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~ 302 (441)
+ .++++..+.+.+...+ .-|++... +|..+++++.|=+ . .-...|++.++|+-.
T Consensus 126 --~--~~~~~~~i~~~~~~~p--~yG~v~~d~~g~~~V~~i~EK~--------~--~s~~~~~GiY~f~~~ 180 (255)
T 4evw_A 126 --I--SQHSDGYLEVFQGGGD--NWSFAKPEHAGSTKVIQTAEKN--------P--ISDLCSTGLYHFNRK 180 (255)
T ss_dssp --G--GGSSSEEEEEEECCSS--CSCEEEESSTTCCBEEEEESSS--------C--SSSEEEEEEEEESCH
T ss_pred --H--hhcCCcEEEEEecCCC--ceeEEEECCCCCeEEEEEEecc--------C--ccCcEEEeEEEECcH
Confidence 1 3566665555544333 55666553 4522455543321 1 114779999999864
No 32
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=98.62 E-value=5.8e-08 Score=94.91 Aligned_cols=184 Identities=11% Similarity=0.037 Sum_probs=97.5
Q ss_pred CCeEEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhC---
Q 013550 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS--- 151 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~--- 151 (441)
..+.+|+||||.||||+. ..||.++|+ .|+|++++.++++...+ + -.++|.|+. ..+.+.+++.+..
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i-~gkpli~~~l~~l~~~g----~-~~i~vv~~~-~~~~i~~~~~~~~~l~ 85 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPV-VDRPLIQYAVDEAVEAG----I-EQMIFVTGR-GKSALEDHFDIAYELE 85 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEE-TTEEHHHHHHHHHHHTT----C-CEEEEEECT-TCHHHHHHTSCCHHHH
T ss_pred CccEEEEECCCCccccCccccCCCceeeeE-CCeEHHHHHHHHHHhCC----C-CEEEEEeCC-CHHHHHHHHhhhhhhh
Confidence 457889999999999985 679999999 79999999999988653 2 134555554 4677777765310
Q ss_pred ------C-----------CCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCc
Q 013550 152 ------K-----------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKE 214 (441)
Q Consensus 152 ------~-----------~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~e 214 (441)
+ ...++.+ + .+..|.|.|+...+- ++.+ +-+
T Consensus 86 ~~l~~~~~~~~~~~~~~~~g~~i~~----------------~--------~~~~~~Gt~~al~~a-----~~~~---~~~ 133 (297)
T 2ux8_A 86 ATMAARGKSLDVLDGTRLKPGNIAY----------------V--------RQQEPMGLGHAVWCA-----RDIV---GDE 133 (297)
T ss_dssp HHHHTTTCCGGGGTTSCCSTTSEEE----------------E--------ECCSCCCHHHHHHTT-----HHHH---CSS
T ss_pred hhhhhccchhhhhhhcccCCCceEE----------------E--------eCCCCCChHHHHHHH-----HHHc---CCC
Confidence 0 0011111 0 112456777633211 1222 247
Q ss_pred EEEEEcCCcccc--cccH-HHHHHHHHcCCcceEEEeeec-cCCccceEEEEe---CCeeEEEEeecCChhhhhhhccCC
Q 013550 215 YVFAANSDNLGA--IVDL-KILNHLIQNKNEYCMEVTPKT-LADVKGGTLISY---EGKVQLLEIAQVPDEHVNEFKSIE 287 (441)
Q Consensus 215 yi~v~nvDNL~~--~~Dp-~~lg~~~~~~~~~~~~vv~k~-~~dekgGvl~~~---~g~~~lvEysq~~~~~~~~~~~~~ 287 (441)
+++|.+.|++.. ..+. .++..+.+.++ ..+.+.+.. ......|++... +|...+.++.+-|... ..
T Consensus 134 ~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~------~~ 206 (297)
T 2ux8_A 134 PFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPG------TA 206 (297)
T ss_dssp CEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC------------------
T ss_pred cEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCC------CC
Confidence 899999999643 2233 45555555554 333332221 112234444322 3322444443333210 01
Q ss_pred CcceEEEeeeeeeHHHHHHH
Q 013550 288 KFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 288 ~~~~fNtnn~~~~l~~l~~~ 307 (441)
.-.+.|++.++|+.+.++.+
T Consensus 207 ~~~~~~~Giyi~~~~~l~~l 226 (297)
T 2ux8_A 207 PSNLSVIGRYILQPEVMRIL 226 (297)
T ss_dssp --CCCEEEEEEECTHHHHHH
T ss_pred CccEEEEEEEEECHHHHHHH
Confidence 12356999999998866443
No 33
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.58 E-value=1.6e-07 Score=93.12 Aligned_cols=183 Identities=15% Similarity=0.110 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCCcCCC---CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhC-----
Q 013550 80 LVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS----- 151 (441)
Q Consensus 80 vavv~LaGGlGTRLG~---~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~----- 151 (441)
+.+|+||||.||||+. ..||.++|+ .|+|++++.++++...+ + -.++|.|+. ..+.+.+++....
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i-~gkpli~~~l~~l~~~g----i-~~iivv~~~-~~~~i~~~~~~~~~~~~~ 85 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPV-VDTPGIELIAAEAAELG----A-TRLAIITAP-NKAGVLAHFERSSELEET 85 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEE-TTEEHHHHHHHHHHHTT----C-CEEEEEECT-TCHHHHHTTSCCHHHHHH
T ss_pred eEEEEECCCCccccCccccCCCceeeeE-CCEEHHHHHHHHHHhCC----C-CEEEEEecC-cHHHHHHHHhccchhhhh
Confidence 5689999999999986 789999999 79999999999988642 2 134555554 4566666654210
Q ss_pred ----C------------CCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcE
Q 013550 152 ----K------------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEY 215 (441)
Q Consensus 152 ----~------------~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~ey 215 (441)
+ .+.++.+ +. ...|.|.|+...+-. +.+ ..+.++
T Consensus 86 l~~~~~~~~~~~~~~~~~g~~i~~----------------~~--------~~~~~Gt~~al~~a~-----~~l-~~~~d~ 135 (323)
T 2pa4_A 86 LMERGKTDQVEIIRRAADLIKAVP----------------VT--------QDKPLGLGHAVGLAE-----SVL-DDDEDV 135 (323)
T ss_dssp HHHTTCHHHHHHTTHHHHHCEEEE----------------EE--------CSSCCCHHHHHHTTG-----GGS-CSSCCE
T ss_pred hhccchhhhhhhhhccccCcceEE----------------Ee--------CCccCCcHHHHHHHH-----HHh-cCCCCe
Confidence 0 0011211 10 113457776443221 111 123456
Q ss_pred EEEEcCCcccc-cccH-HHHHHHHHcCCcceEEEeee--ccCCccceEEEEe-----CCeeEEEEeecCChhhhhhhccC
Q 013550 216 VFAANSDNLGA-IVDL-KILNHLIQNKNEYCMEVTPK--TLADVKGGTLISY-----EGKVQLLEIAQVPDEHVNEFKSI 286 (441)
Q Consensus 216 i~v~nvDNL~~-~~Dp-~~lg~~~~~~~~~~~~vv~k--~~~dekgGvl~~~-----~g~~~lvEysq~~~~~~~~~~~~ 286 (441)
++|.+.|++.. ..+. .++.++.+.++ .++-+.+. ..+.. -|++... +|..+++.+.+-|... .
T Consensus 136 ~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~-yg~v~~d~~~~~~~~~~V~~~~Ekp~~~------~ 207 (323)
T 2pa4_A 136 VAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSK-YGIFEIEADTKDSDVKKVKGMVEKPAIE------D 207 (323)
T ss_dssp EEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEECCGGGGGG-SEEEEEEECCSSTTEEEEEEEEESCCTT------T
T ss_pred EEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEEecccccCC-ccEEEeCCcccCCCceeEEEEEECCCCc------c
Confidence 99999999544 2333 45555555554 23333222 12333 4444332 3323555555544211 1
Q ss_pred CCcceEEEeeeeeeHHHHHHH
Q 013550 287 EKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 287 ~~~~~fNtnn~~~~l~~l~~~ 307 (441)
....+.|++.++|+-+.+..+
T Consensus 208 ~~~~~~~~GiY~~~~~~~~~l 228 (323)
T 2pa4_A 208 APSRLAATGRYLLDRKIFDAL 228 (323)
T ss_dssp CSCSEEEEEEEEEETHHHHHH
T ss_pred ccccEEEEEEEEECHHHHHHH
Confidence 122467999999999877544
No 34
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=98.56 E-value=5.5e-07 Score=90.28 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCCcCC----CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCC
Q 013550 80 LVVLKLNGGLGTTMG----CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (441)
Q Consensus 80 vavv~LaGGlGTRLG----~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~ 155 (441)
+.+|+||||.||||+ ...||.++++..++|++|+.++++..+. |+ -..+|.|+..-.+.+.+++.+.. ..
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~---~~-~~iivvt~~~~~~~i~~~l~~~~--~~ 75 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEM---DP-KDVIVVTHKDYVERTKKELPELP--DE 75 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTC---CG-GGEEEEEEGGGHHHHHHHCTTSC--GG
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccC---CC-CcEEEEcChHHHHHHHHHhhccc--cc
Confidence 357899999999998 5689999999444999999999998751 11 14566665543344555544321 01
Q ss_pred ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccc-cH-HHH
Q 013550 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIV-DL-KIL 233 (441)
Q Consensus 156 ~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~-Dp-~~l 233 (441)
++. + +..|.|+|........ .. ..-++++|.+.|.+.... +. .++
T Consensus 76 ~ii-----------------~---------e~~~~gta~ai~~a~~------~~-~~~~~~lvl~~D~~~~~~~~~~~~l 122 (336)
T 2x65_A 76 NII-----------------A---------EPMKKNTAPACFIGTK------LA-DDDEPVLVLPADHRIPDTKKFWKTV 122 (336)
T ss_dssp GEE-----------------E---------ESSCCCHHHHHHHHHT------TS-CTTCEEEEEETTCBCCCHHHHHHHH
T ss_pred eEE-----------------e---------CCCCCCcHHHHHHHHH------hh-CCCCEEEEEcCCceeccHHHHHHHH
Confidence 111 1 1135566663321111 01 124789999999954321 11 122
Q ss_pred ----HHHHHcCCcceEEEeeeccCCccceEEEEeC----CeeEEEEeecCChhh-hhhhccCCCcceEEEeeeeeeHHHH
Q 013550 234 ----NHLIQNKNEYCMEVTPKTLADVKGGTLISYE----GKVQLLEIAQVPDEH-VNEFKSIEKFKIFNTNNLWVNLKAI 304 (441)
Q Consensus 234 ----g~~~~~~~~~~~~vv~k~~~dekgGvl~~~~----g~~~lvEysq~~~~~-~~~~~~~~~~~~fNtnn~~~~l~~l 304 (441)
.++.++++.+.+-+ ..+.+...-|.+...+ +..++..+.|=|... .+.+-. .+..+.|++.+.|+.+.+
T Consensus 123 ~~~~~~~~~~~~~vt~~i-~p~~~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~~-~g~y~~n~Giy~~~~~~l 200 (336)
T 2x65_A 123 KKALDALEKYDGLFTFGI-VPTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFVE-SGRFLWNSGMFLWKAREF 200 (336)
T ss_dssp HHHHHHHHHHCSEEEEEE-CCCSCCSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHHH-HTCEEEEEEEEEEEHHHH
T ss_pred HHHHHHHHhcCCeEEEEe-ecccCCCCceEEEECCccCCCccEEEEEEECCChHHHHHHHh-cCCeEEEeeeEEEEHHHH
Confidence 22334465554444 3444544556654321 124566666655432 111111 122367999999999988
Q ss_pred HHHHHh
Q 013550 305 KRLVEA 310 (441)
Q Consensus 305 ~~~~~~ 310 (441)
.+.+++
T Consensus 201 l~~l~~ 206 (336)
T 2x65_A 201 IEEVKV 206 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 35
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=98.53 E-value=1.2e-06 Score=84.48 Aligned_cols=181 Identities=9% Similarity=0.076 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHH-HHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIV-IQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~-~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
..+|+||||.||||+ +|.++++ .|||++++.+ ++++.. ++ -.+++-|. ++.+.++++++. .++.
T Consensus 2 ~~aiIlA~G~stR~~---~K~L~~i-~GkPli~~~i~~~~~~~----~~-~~vvVvt~---~~~i~~~~~~~g---~~v~ 66 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP---GKPLLLI-HDRPMILRVVDQAKKVE----GF-DDLCVATD---DERIAEICRAEG---VDVV 66 (253)
T ss_dssp EEEEEECCSCCTTST---TGGGSEE-TTEEHHHHHHHHHHTCT----TC-CEEEEEES---CHHHHHHHHTTT---CCEE
T ss_pred eEEEEEeCCCCCCCC---CCceeeE-CCeEhHHHHHHHHHHhc----CC-CEEEEECC---HHHHHHHHHHcC---CeEE
Confidence 468999999999997 5999999 9999999999 887653 22 13455553 477888876543 2332
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
+ .. ...|.|.+-++.++ +.+...+.+++++.++|+ |...-+. .++..+
T Consensus 67 ~-----------------~~-------~~~~~Gt~~i~~a~------~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~ 116 (253)
T 4fcu_A 67 L-----------------TS-------ADHPSGTDRLSEVA------RIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLL 116 (253)
T ss_dssp E-----------------CC-------TTCCCHHHHHHHHH------HHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred E-----------------eC-------CCCCChHHHHHHHH------HhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHH
Confidence 1 10 11345554444333 333222568999999999 6533222 344445
Q ss_pred HHc-CCcceEEEeee------ccCCccceEEEEeCCeeEEEEeec--CChhhhhhhcc---C-CCcceEEEeeeeeeHHH
Q 013550 237 IQN-KNEYCMEVTPK------TLADVKGGTLISYEGKVQLLEIAQ--VPDEHVNEFKS---I-EKFKIFNTNNLWVNLKA 303 (441)
Q Consensus 237 ~~~-~~~~~~~vv~k------~~~dekgGvl~~~~g~~~lvEysq--~~~~~~~~~~~---~-~~~~~fNtnn~~~~l~~ 303 (441)
.++ ++.++.-+++- .+|.. +++++..+|+ ++-+++ +|.. .+.+.. . ....+-|++.|.|+.++
T Consensus 117 ~~~~~~~~at~~~~~~~~~~~~~p~~-~kvv~d~~g~--~l~fsr~~ip~~-r~~~~~~~~~~~~~~~~~~GiY~f~~~~ 192 (253)
T 4fcu_A 117 VDKPNCSMSTLCEPIHALDEFQRDSI-VKVVMSKQNE--ALYFSRATIPYD-RDGAKRDEPTLHTQAFRHLGLYAYRVSL 192 (253)
T ss_dssp HHCTTCSEEEEEEECCCHHHHHCTTS-CEEEECTTSB--EEEEESSCCSCC-TTTSSSSSCCCCSCCEEEEEEEEEEHHH
T ss_pred HhCCCCCEEEEeEEcCCHHHccCCCc-cEEEECCCCe--EEEecCCCCCCC-CCcccccccccccceeEEEEEEEeCHHH
Confidence 444 34454444432 23333 5676667776 444444 4422 111100 0 11234599999999999
Q ss_pred HHHHHH
Q 013550 304 IKRLVE 309 (441)
Q Consensus 304 l~~~~~ 309 (441)
|++..+
T Consensus 193 l~~~~~ 198 (253)
T 4fcu_A 193 LQEYVT 198 (253)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 998763
No 36
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=98.47 E-value=3.4e-07 Score=87.77 Aligned_cols=65 Identities=18% Similarity=0.400 Sum_probs=50.1
Q ss_pred CeEEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHh
Q 013550 79 KLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (441)
Q Consensus 79 kvavv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~ 150 (441)
++.+|+||||.||||+ .+.||.++++ .|+|++++.++++...+ + -.++|.|... .+.+.++.+++
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i-~gkpli~~~l~~l~~~g----~-~~i~vv~~~~-~~~i~~~~~~~ 92 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQV-NQKPLIEYQIEFLKEKG----I-NDIIIIVGYL-KEQFDYLKEKY 92 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEE-TTEEHHHHHHHHHHHTT----C-CCEEEEECTT-GGGGTHHHHHH
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeE-CCEEHHHHHHHHHHHCC----C-CeEEEEeCCc-HHHHHHHHHhC
Confidence 5788999999999998 5789999999 89999999999998753 2 2456666543 45565555443
No 37
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=98.46 E-value=2.6e-06 Score=79.53 Aligned_cols=184 Identities=8% Similarity=0.083 Sum_probs=96.3
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||| ||.++++ .|+|++++.++++.+.. .--.+++.|. ++.+.++++++. .++
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~l~~i-~gkpll~~~l~~~~~~~----~~~~ivvv~~---~~~i~~~~~~~~---~~~- 68 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKNLRKM-NGISLLGHTINAAISSK----CFDRIIVSTD---GGLIAEEAKNFG---VEV- 68 (228)
T ss_dssp EEEEEEECCSSCSSST---TTTTCEE-TTEEHHHHHHHHHHHHC----CCSEEEEEES---CHHHHHHHHHTT---CEE-
T ss_pred ceEEEEecCCCCCCCC---Cccccee-CCcCHHHHHHHHHHhCC----CCCEEEEECC---CHHHHHHHHHcC---CEE-
Confidence 4778999999999999 9999999 89999999999998753 1124566663 466777776642 232
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
+.+ + . .+.+.|.|- ..+++. .++.+ ..+.+++++.++|+ +....+. .++..+
T Consensus 69 -~~~----------------~---~--~~~~~~~g~-~~sv~~--~l~~~-~~~~d~vlv~~~D~P~~~~~~i~~l~~~~ 122 (228)
T 1ezi_A 69 -VLR----------------P---A--ELASDTASS-ISGVIH--ALETI-GSNSGTVTLLQPTSPLRTGAHIREAFSLF 122 (228)
T ss_dssp -EEC----------------C---C--------CHH-HHHHHH--HHHHH-TCCSEEEEECCTTCTTCCHHHHHHHHTTC
T ss_pred -EeC----------------c---h--HHcCCCCCh-HHHHHH--HHHHh-CCCCCEEEEEcCCCCcCCHHHHHHHHHHH
Confidence 111 0 0 011122222 222211 12222 22468999999999 5432222 222222
Q ss_pred HHcCCcceEEEeeeccCCccceEEEEeCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 237 IQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 237 ~~~~~~~~~~vv~k~~~dekgGvl~~~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
.++++++++-+++......+.+++ ..+|+ ++++.+-. .....++........|.+.++++-+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~p~~~~~~-~~~g~--~~~~~~~~-~~~~~~~~~~~~~~~~~giy~~~~~~l~~~ 189 (228)
T 1ezi_A 123 DEKIKGSVVSACPMEHHPLKTLLQ-INNGE--YAPMRHLS-DLEQPRQQLPQAFRPNGAIYINDTASLIAN 189 (228)
T ss_dssp CTTTCCCEEEEEECSSCTTSCEEE-CC--C--EEESSCHH-HHTCCGGGSCCEEEEEEEEEEEEHHHHHHH
T ss_pred HhcCCCEEEEEEecCCCcceeeEE-cCCCc--Eeeccccc-cccCCcccCchhheeeeEEEEEeHHHHhhC
Confidence 334567776666554411222222 23444 23322100 000001111111234888899998887764
No 38
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=98.39 E-value=6.6e-06 Score=83.14 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=100.9
Q ss_pred EEEEEcCCCCCcCC---CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCce
Q 013550 81 VVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEI 157 (441)
Q Consensus 81 avv~LaGGlGTRLG---~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i 157 (441)
.+|+||||.||||+ ...||.++|+ .|+|++++.++++.... + -.+++.++.. +.+++++... ++
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i-~g~pli~~~l~~l~~~~----~-~~i~vv~~~~----i~~~~~~~~~---~i 68 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPI-LSKPLIEYQIEYLRKCG----I-RDITVIVSSK----NKEYFEKKLK---EI 68 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEE-TTEEHHHHHHHHHHHTT----C-CEEEEEECGG----GHHHHHHHCT---TC
T ss_pred eEEEEcCcCccccCcccCCCCcceeeE-CCEeHHHHHHHHHHHCC----C-CEEEEEeCHH----HHHHhhccCC---cE
Confidence 47899999999997 3779999999 89999999999998753 1 1456666544 6777766421 22
Q ss_pred EEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccHHHHHHHH
Q 013550 158 HTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLI 237 (441)
Q Consensus 158 ~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~ 237 (441)
.+.. .+ . .|.|.++...+..+ .++++|.+.|.+.. ++..+..++
T Consensus 69 ~~~~----------------~~---~----~~~g~~~~l~~~~~-----------~~~~lv~~~D~~~~--~~~~~~~l~ 112 (401)
T 2ggo_A 69 SIVT----------------QK---D----DIKGTGAAILSAKF-----------NDEALIIYGDLFFS--NEKEICNII 112 (401)
T ss_dssp EEEE----------------CC---T----TCCBSTTTGGGCCC-----------SSEEEEEETTEEES--CSHHHHHHT
T ss_pred EEEe----------------CC---C----CCCChHHHHHHhcc-----------CCCEEEEeCccccc--cHHHHHHHH
Confidence 2211 11 0 24455543322211 47899999999532 244555555
Q ss_pred HcCCcceEEEeeeccCCccceEEEE-eCCeeEEEEeecCChhhhhhhccCCCcceEEEeeeeeeHHHHHHH
Q 013550 238 QNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (441)
Q Consensus 238 ~~~~~~~~~vv~k~~~dekgGvl~~-~~g~~~lvEysq~~~~~~~~~~~~~~~~~fNtnn~~~~l~~l~~~ 307 (441)
+ +++.++-+.+..++.. .|.+.. .+|+ +.++.+-|.. ....+.|++.++++.+.++.+
T Consensus 113 ~-~~~~~i~~~~~~~~~~-~~~v~~~~~g~--v~~~~ek~~~--------~~~~~~~~Giy~~~~~~~~~l 171 (401)
T 2ggo_A 113 T-LKENAIIGVKVSNPKD-YGVLVLDNQNN--LSKIIEKPEI--------PPSNLINAGIYKLNSDIFTYL 171 (401)
T ss_dssp T-CSSEEEEEEECSCCSS-SCEEEECTTSS--EEEEECSCSS--------CSCSEEEEEEEEEETHHHHHH
T ss_pred H-hcCCEEEEEEcCCCcc-eeEEEECCCCe--EEEEEECCCC--------CCCcEEEEEEEEEcHHHHHHh
Confidence 4 4555555555444433 444443 3454 4444442211 123477999999999887654
No 39
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=98.35 E-value=2.9e-06 Score=76.80 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=45.7
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHH
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKII 147 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l 147 (441)
++.+|+||||.||||| .||.++++ .|+|++++.++++.... + -+++|.|+.. ++.+.+++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~-~g~pli~~~l~~l~~~~----~-~~i~vv~~~~-~~~~~~~~ 64 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQLLPL-GDTTLLGATLAMARRCP----F-DQLIVTLGGA-ADEVLEKV 64 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGGGCEE-TTEEHHHHHHHHHHTSS----C-SEEEEEECTT-HHHHHHHS
T ss_pred ceEEEEECCCCCCCCC--CCEEeCEe-CccCHHHHHHHHHHhCC----C-CcEEEEeCCC-HHHHHHHh
Confidence 5788999999999998 79999999 89999999999987652 1 2456666543 44444444
No 40
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=98.28 E-value=1.8e-06 Score=78.58 Aligned_cols=62 Identities=26% Similarity=0.359 Sum_probs=46.9
Q ss_pred EEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHh
Q 013550 81 VVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (441)
Q Consensus 81 avv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~ 150 (441)
.+|+||||.|||||. .||.++++ .|+|++++.+++++... + -.+++.|+.. ++.+.+++++.
T Consensus 2 ~aiIlA~G~s~R~~~-~~K~l~~~-~g~pli~~~l~~l~~~~----~-~~v~vv~~~~-~~~i~~~~~~~ 63 (196)
T 3rsb_A 2 DALIMAGGKGTRMGG-VEKPLIKL-CGRCLIDYVVSPLLKSK----V-NNIFIATSPN-TPKTKEYINSA 63 (196)
T ss_dssp EEEEEC----CGGGG-SCGGGCEE-TTEEHHHHHHHHHHSSS----C-CCEEEECCTT-CHHHHHHHHHH
T ss_pred EEEEECCCCCCcCCC-CCccEEEE-CCEEHHHHHHHHHHHCC----C-CEEEEEeCCC-hHHHHHHHHhh
Confidence 578999999999987 79999999 89999999999988642 1 2566666655 67888998873
No 41
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=98.28 E-value=3.8e-06 Score=79.85 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=46.5
Q ss_pred CeEEEEEcCCCCCcCCC-CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhC
Q 013550 79 KLVVLKLNGGLGTTMGC-TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYS 151 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~-~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~ 151 (441)
++.+|+||||.|||||. +.||.++++ .|+|++++.++.+.... .--.++|.++..-.+...+.++++.
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l~~l-~Gkpll~~~l~~~~~~~----~~~~ivvv~~~~~~~~~~~~~~~~~ 71 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQFLPL-NGKPIIVHTVEKFILNT----RFDKILISSPKEWMNHAEDNIKKYI 71 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGGSEE-TTEEHHHHHHHHHHTCT----TCSEEEEEECGGGHHHHHHHHHHHC
T ss_pred ccEEEEECCccccccCCCCCCCeEEEE-CCeeHHHHHHHHHHcCC----CCCEEEEEeCHHHHHHHHHHHHHhC
Confidence 57899999999999998 889999999 89999999999987642 1124566666544445667777764
No 42
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=98.27 E-value=1.2e-05 Score=75.50 Aligned_cols=130 Identities=12% Similarity=0.170 Sum_probs=79.8
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCCceE
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNVEIH 158 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~~i~ 158 (441)
++.+|+||||.||||+ +|.++++ .|+|++++.++++++.. .--.+++-| .++.+.++++++. .++
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~l~~i-~Gkpli~~~i~~~~~~~----~~~~ivv~~---~~~~i~~~~~~~g---~~~- 67 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKNIKRL-AGVPLIGWVLRAALDAG----VFQSVWVST---DHDEIENVAKQFG---AQV- 67 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTTTSEE-TTEEHHHHHHHHHHHHT----CCSEEEEEE---SCHHHHHHHHHTT---CEE-
T ss_pred cEEEEEEcCCCCCCCC---CcccceE-CCEEHHHHHHHHHHhCC----CcCEEEEEC---ChHHHHHHHHHcC---CEE-
Confidence 5788999999999996 5999999 89999999999998763 112455555 3577888887642 232
Q ss_pred EEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCc-ccccccH-HHHHHH
Q 013550 159 TFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDL-KILNHL 236 (441)
Q Consensus 159 ~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~ 236 (441)
+.+.. ......+.|.+.+..+|.. + .+.+++++.++|+ |...-+. .++..+
T Consensus 68 -~~~~~------------------~~~~~~~~~~~~v~~al~~------~--~~~d~vlv~~~D~Pli~~~~i~~l~~~~ 120 (229)
T 1qwj_A 68 -HRRSS------------------ETSKDSSTSLDAIVEFLNY------H--NEVDIVGNIQATSPCLHPTDLQKVAEMI 120 (229)
T ss_dssp -EECCG------------------GGSSTTCCHHHHHHHHHTT------C--TTCSEEEEECTTCTTCCHHHHHHHHHHH
T ss_pred -EeChh------------------hhcCCCCcHHHHHHHHHHh------c--CCCCEEEEecCCCCcCCHHHHHHHHHHH
Confidence 21110 0000122232333333321 1 2568999999999 5543222 345555
Q ss_pred HHcCCcceEEEeee
Q 013550 237 IQNKNEYCMEVTPK 250 (441)
Q Consensus 237 ~~~~~~~~~~vv~k 250 (441)
.+.++++++.+++.
T Consensus 121 ~~~~~~~~~~~~~~ 134 (229)
T 1qwj_A 121 REEGYDSVFSVVRR 134 (229)
T ss_dssp HSSCCSEEEEEEEE
T ss_pred HhCCCCEEEEEeec
Confidence 56677766666533
No 43
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=98.25 E-value=4.8e-06 Score=77.53 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=40.5
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHh
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~ 150 (441)
.++.+|+||||.|||||.+.||.++++ .|+|++++.++++.... ++ -.++|.|+.. ++.+.+ +.++
T Consensus 5 ~~~~aiIlA~G~g~R~~~~~~K~l~~~-~gkpli~~~l~~l~~~~---~~-~~ivvv~~~~-~~~~~~-~~~~ 70 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGADKPKQYVEI-GSKTVLEHVLGIFERHE---AV-DLTVVVVSPE-DTFADK-VQTA 70 (231)
T ss_dssp CCEEEEEECC----------CCSCCEE-TTEEHHHHHHHHHHTCT---TC-CEEEEECCTT-CSTHHH-HHHH
T ss_pred CceEEEEEcccccccCCCCCCceEeEE-CCeEHHHHHHHHHHcCC---CC-CeEEEEECcc-HHHHHH-HHhc
Confidence 357899999999999998779999999 89999999999988642 01 2455555543 456666 6554
No 44
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=98.23 E-value=3.7e-06 Score=78.27 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=42.5
Q ss_pred eEEEEEcCCCCCcCCC-CCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHh
Q 013550 80 LVVLKLNGGLGTTMGC-TGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKY 150 (441)
Q Consensus 80 vavv~LaGGlGTRLG~-~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~ 150 (441)
+.+|+||||.|||||. +.||.++++ .|+|++++.++++.... ++ -.++|.|+....+.+.++++++
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l~~i-~g~pli~~~l~~l~~~~---~~-~~i~vv~~~~~~~~~~~~~~~~ 69 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLEL-GDRPILIHTIEKFVLEP---SI-EKIVVGVHGDWVSHAEDLVDKY 69 (236)
T ss_dssp EEEEEEEC-----------CGGGSEE-TTEEHHHHHHHHHHTCT---TC-CCEEEEECGGGHHHHHHHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCeeeee-CCccHHHHHHHHHHcCC---CC-CeEEEEeCHHHHHHHHHHHHhc
Confidence 5689999999999996 679999999 89999999999988642 11 2567777665446677777764
No 45
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=98.23 E-value=3.6e-06 Score=76.16 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=45.9
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHH
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKII 147 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l 147 (441)
++.+|+||||.||||| .||.++++ .|+|++++.++++.... + -.++|.|+.. .+.+.+++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~-~g~pll~~~l~~l~~~~----~-~~i~vv~~~~-~~~~~~~~ 64 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQLLPY-RDTTVLGATLDVARQAG----F-DQLILTLGGA-ASAVRAAM 64 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGGGSEE-TTEEHHHHHHHHHHHTT----C-SEEEEEECTT-HHHHHHHS
T ss_pred ceEEEEECCCCcccCC--CCeEcCee-CCccHHHHHHHHHHhcC----C-CcEEEEeCCC-HHHHHHHh
Confidence 4778999999999997 79999999 89999999999998753 1 1456666543 44544444
No 46
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=98.18 E-value=4.8e-06 Score=76.95 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=44.0
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCC
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFN 138 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~ 138 (441)
++.+|+||||.|||||...||.++++ .|+|++++.++++.... .--.+++.|+..
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l~~~-~g~pli~~~l~~l~~~~----~~~~i~vv~~~~ 56 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAFVTL-GGTPLLEHALSGLRASG----VIDRIVIAVPPA 56 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGGSEE-TTEEHHHHHHHHHHHHS----CCSEEEEEECGG
T ss_pred ceEEEEECCccCcccCCCCCCeeeEE-CCeEHHHHHHHHHhcCC----CCCeEEEEEccc
Confidence 46789999999999997789999999 89999999999998752 112456666543
No 47
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=98.18 E-value=4e-06 Score=83.96 Aligned_cols=188 Identities=13% Similarity=0.104 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCcCC----CCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHHHhCCCCC
Q 013550 80 LVVLKLNGGLGTTMG----CTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIEKYSKSNV 155 (441)
Q Consensus 80 vavv~LaGGlGTRLG----~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~~~~~~~~ 155 (441)
+.+|+||||.||||. ...||.++++..++|++|+.++++.... |+ -.++|.|...-.+. ++++-. ..
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~---~~-~~iiVvt~~~~~~~----i~~~l~-~~ 73 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLV---PP-ERTLLAVRRDQEAV----ARPYAD-GI 73 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTS---CG-GGEEEEEEGGGHHH----HGGGCS-SS
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcC---CC-CCEEEEcChHHHHH----HHHHhc-cC
Confidence 578999999999997 4679999999434999999999987651 11 14566665432222 233211 01
Q ss_pred ceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHCCCcEEEEEcCCcccccccH--HHH
Q 013550 156 EIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDL--KIL 233 (441)
Q Consensus 156 ~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~G~eyi~v~nvDNL~~~~Dp--~~l 233 (441)
.+ .+ +..|.|+|........ +.. ..+-++++|.+.|.+....+- ..+
T Consensus 74 ~~-----------------i~---------e~~~~gta~ai~~a~~---l~~--~~~~~~~lvl~~D~~~~~~~~~~~~l 122 (337)
T 2cu2_A 74 RL-----------------LL---------EPLGRDTAGAVLLGVA---EAL--KEGAERLLVLPADHYVGDDEAYREAL 122 (337)
T ss_dssp EE-----------------EE---------ESSCCHHHHHHHHHHH---HHH--HHTCSEEEEEESSCEESCHHHHHHHH
T ss_pred ce-----------------Ee---------cCCCCCcHHHHHHHHH---Hhc--cCCCCEEEEEECCccCCCHHHHHHHH
Confidence 10 11 1135566663322111 211 113579999999995432111 122
Q ss_pred HHHH---HcCCcceEEEeeeccCCccceEEEEe-C--CeeEEEEeecCChhh-hhhhccCCCcceEEEeeeeeeHHHHHH
Q 013550 234 NHLI---QNKNEYCMEVTPKTLADVKGGTLISY-E--GKVQLLEIAQVPDEH-VNEFKSIEKFKIFNTNNLWVNLKAIKR 306 (441)
Q Consensus 234 g~~~---~~~~~~~~~vv~k~~~dekgGvl~~~-~--g~~~lvEysq~~~~~-~~~~~~~~~~~~fNtnn~~~~l~~l~~ 306 (441)
.-+. +.++.+.+-+. .+.+...-|.+... + +..++..+.|=|... .+.+-.. + .+.|++.++|+.+.+.+
T Consensus 123 ~~~~~~~~~~~~vt~~i~-p~~~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~~~-g-~~~n~Giy~f~~~~ll~ 199 (337)
T 2cu2_A 123 ATMLEAAEEGFVVALGLR-PTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIRK-G-YVWNGGVFAFAPATMAE 199 (337)
T ss_dssp HHHHHHCCTTCEEEEEEC-CSSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHHT-T-CEEEEEEEEECHHHHHH
T ss_pred HHHHHHHHcCCeEEEeec-cCCCCCCceEEEECCcccccCeEEEEEeCCChHHHHHHhhc-C-CEEEEEEEEEeHHHHHH
Confidence 2221 22444444443 33444455665432 1 113566666655432 2222111 2 46799999999998866
Q ss_pred HHHh
Q 013550 307 LVEA 310 (441)
Q Consensus 307 ~~~~ 310 (441)
.+++
T Consensus 200 ~l~~ 203 (337)
T 2cu2_A 200 LFRR 203 (337)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 48
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=98.18 E-value=1.2e-05 Score=76.36 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=49.6
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCc-CEEEeeCCCChhHHHHHH
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNV-PLLLMNSFNTHDDTSKII 147 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~i-Pl~IMtS~~T~e~T~~~l 147 (441)
+++.+|+||||.|||||.+.||.++++ .|+|++++.++.+.+.. .+ .+++.++....+...+++
T Consensus 6 ~~~~aIIlAaG~g~Rmg~~~~K~l~~l-~Gkpll~~~l~~~~~~~-----~~~~ivVv~~~~~~~~~~~~~ 70 (231)
T 3q80_A 6 GEVVAIVPAAGSGERLAVGVPKAFYQL-DGQTLIERAVDGLLDSG-----VVDTVVVAVPADRTDEARQIL 70 (231)
T ss_dssp CCEEEEEECCCCCTTTCSSSCGGGCEE-TTEEHHHHHHHHHHHTS-----CCCEEEEEECGGGHHHHHHHH
T ss_pred CceEEEEECCCCCccCCCCCCceEEEE-CCeEHHHHHHHHHHhCC-----CCCeEEEECChHHHHHHHHHh
Confidence 478999999999999999999999999 99999999999987642 12 456666554334444444
No 49
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=98.06 E-value=4.7e-06 Score=76.58 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=41.1
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCC
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFN 138 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~ 138 (441)
++.+|+||||.|||||. ||.++++ .|+|++++.++++... .++|.++..
T Consensus 2 ~~~~iIlAgG~g~Rmg~--~K~l~~i-~g~pll~~~l~~l~~~--------~ivvv~~~~ 50 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG--DKLLAKI-DNTPIIMRTIRIYGDL--------EKIIIVGKY 50 (197)
T ss_dssp CEEEEEECSCCTTCCCS--SGGGSBS-SSSBHHHHHHHHTTTS--------BCCEEECTT
T ss_pred ceEEEEECCcCcccCCC--CeeeCEe-CceEHHHHHHHHHHhC--------CEEEEECCC
Confidence 36789999999999985 9999999 8999999999887653 556667664
No 50
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=98.03 E-value=3.5e-06 Score=79.03 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=43.8
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCC
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSF 137 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~ 137 (441)
.++.+|+||||.|||||.+.||.++++ .|+|++++.++++.... .--.++|.|..
T Consensus 6 ~~~~~iIlA~G~g~R~~~~~~K~l~~i-~g~pll~~~i~~l~~~~----~~~~ivvv~~~ 60 (236)
T 1i52_A 6 LDVCAVVPAAGFGRRMQTECPKQYLSI-GNQTILEHSVHALLAHP----RVKRVVIAISP 60 (236)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGGSEE-TTEEHHHHHHHHHHTST----TEEEEEEEECT
T ss_pred CceeEEEECCcCccccCCCCCcceeeE-CCEEHHHHHHHHHHhCC----CCCeEEEEeCc
Confidence 357899999999999997789999999 89999999999988642 11245555554
No 51
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=98.02 E-value=5.5e-05 Score=70.68 Aligned_cols=62 Identities=18% Similarity=0.312 Sum_probs=42.0
Q ss_pred cCCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCCChhHHHHHHH
Q 013550 77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFNTHDDTSKIIE 148 (441)
Q Consensus 77 l~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~T~e~T~~~l~ 148 (441)
..++.+|+||||.|||||.. ||.++++ .|+|++++.++++...- -.++|.+ +.++...+++.
T Consensus 16 m~~~~~iIlA~G~g~R~~~~-~K~l~~i-~g~pli~~~l~~l~~~~------~~i~vv~--~~~~~~~~~~~ 77 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV-PKPLVRV-GGCEIILRTMKLLSPHV------SEFIIVA--SRYADDIDAFL 77 (232)
T ss_dssp CCCEEEEEEECC------CC-CGGGCEE-TTEEHHHHHHHHHGGGE------EEEEEEE--STTHHHHHHHH
T ss_pred cccceEEEECCcCcCcCCCC-CcEEeEE-CCEEHHHHHHHHHHHhC------CEEEEEe--CChHHHHHHHH
Confidence 55788999999999999855 9999999 89999999998886541 2455655 44566666653
No 52
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=97.93 E-value=6.9e-05 Score=69.05 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=42.6
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCC
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFN 138 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~ 138 (441)
++.+|+||||.||||| ..||.++++ .|+|++++.++++... + -.++|.|+..
T Consensus 6 ~~~~iILAgG~s~Rmg-~~~K~ll~i-~G~pli~~~l~~l~~~-----~-~~ivvv~~~~ 57 (201)
T 1e5k_A 6 TITGVVLAGGKARRMG-GVDKGLLEL-NGKPLWQHVADALMTQ-----L-SHVVVNANRH 57 (201)
T ss_dssp SEEEEEECCCCCSSSC-SSCGGGSEE-TTEEHHHHHHHHHHHH-----C-SCEEEECSSS
T ss_pred cceEEEEcCCCCCcCC-CCCCceeeE-CceeHHHHHHHHHHhh-----C-CEEEEEcCCc
Confidence 5789999999999998 579999999 8999999999998742 1 2566666543
No 53
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=97.93 E-value=1.2e-05 Score=75.74 Aligned_cols=49 Identities=14% Similarity=0.364 Sum_probs=38.7
Q ss_pred CeEEEEEcCCC---CCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEee
Q 013550 79 KLVVLKLNGGL---GTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMN 135 (441)
Q Consensus 79 kvavv~LaGGl---GTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMt 135 (441)
++.+|+||||. |+||| ..||.++++ .|+|++++.++++.... ..++|.+
T Consensus 2 ~~~~vIlAaG~tRl~~r~~-~~~K~l~~i-~g~pll~~~l~~l~~~~------~~ivvv~ 53 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFG-VGSKALVPY-RGRPMVEWVLEALYAAG------LSPVYVG 53 (232)
T ss_dssp CCEEEEECCCBCSGGGTTT-CSBGGGSEE-TTEETHHHHHHHHHHTT------CEEEEES
T ss_pred ceeEEEECCCCCccccccC-CCCceeeEE-CCEEHHHHHHHHHHhcC------CEEEEEe
Confidence 46789999999 55555 369999999 89999999999998764 2556643
No 54
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=97.92 E-value=2.9e-05 Score=72.42 Aligned_cols=46 Identities=17% Similarity=0.372 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeC
Q 013550 80 LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNS 136 (441)
Q Consensus 80 vavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS 136 (441)
+.+|+||||.||||| .||.++++ .|+|+++..++.+... +++|.+.
T Consensus 1 m~aiILAgG~s~Rmg--~~K~ll~~-~G~pli~~~~~~l~~~--------~vvvv~~ 46 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG--MEKTEVML-CGKKLIEWVLEKYSPF--------QTVFVCR 46 (208)
T ss_dssp CEEEEECCCCCTTTT--SCGGGCEE-TTEEHHHHHHHHHTTS--------EEEEECS
T ss_pred CEEEEECCCchhhCC--CCCcccEE-CCeeHHHHHHHHhcCC--------CEEEEEC
Confidence 367999999999999 79999999 9999999999988753 6666664
No 55
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=97.89 E-value=8.6e-06 Score=75.71 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHH
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l 121 (441)
++.+|+||||.|||||.+.||.++++ .|+|++++.++++...
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l~~i-~g~pli~~~l~~l~~~ 45 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQYIPL-LGQPIALYSFFTFSRM 45 (228)
T ss_dssp CEEEEEECCCCC-------CGGGSEE-TTEEHHHHHHHHHHHC
T ss_pred ceEEEEECCccccccCCCCCccEeEE-CCEEHHHHHHHHHHcC
Confidence 57889999999999998789999999 8999999999998875
No 56
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=97.62 E-value=3e-05 Score=71.33 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=42.5
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeCCC
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNSFN 138 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS~~ 138 (441)
.++.+|+||||.||||| .||.++++ .|+|++++.++++...- -+++|.|+..
T Consensus 13 ~~~~~iILA~G~g~Rmg--~~K~ll~i-~g~pll~~~l~~l~~~~------~~i~vv~~~~ 64 (201)
T 2e8b_A 13 KVNTCYVLAGGKSKRFG--EDKLLYEI-KGKKVIERVYETAKSVF------KEVYIVAKDR 64 (201)
T ss_dssp SCCEEEEEEESSCCCCS--TTHHHHHH-HHHHHHHHHHHHHHTTC------SEEEEEESCS
T ss_pred cCceEEEECCCCCccCC--CCcccceE-CceEHHHHHHHHHHHhC------CEEEEEeCcH
Confidence 35789999999999999 79999999 89999999999887541 2566666544
No 57
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=97.60 E-value=3.5e-05 Score=71.83 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHH
Q 013550 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENL 121 (441)
Q Consensus 78 ~kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l 121 (441)
.-+.+|+||||.|||||.+.||.++++ .|+|++++.+++++..
T Consensus 12 ~~~~aiILAaG~s~Rm~~~~~K~l~~i-~Gkpli~~~i~~l~~~ 54 (234)
T 1vpa_A 12 HMNVAILLAAGKGERMSENVPKQFLEI-EGRMLFEYPLSTFLKS 54 (234)
T ss_dssp CCEEEEEEECCCCGGGCCSSCGGGCEE-TTEETTHHHHHHHHHC
T ss_pred ccCeEEEEcCcchhhcCCCCCceEEEE-CCeEHHHHHHHHHHcC
Confidence 357889999999999998789999999 8999999999998764
No 58
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=97.45 E-value=6.9e-05 Score=70.64 Aligned_cols=37 Identities=30% Similarity=0.500 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHH
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQ 117 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~q 117 (441)
++++|+||||.|||||.+ ||.++++ .|+|++++.+++
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~l~~i-~gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKAFLQV-GGRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------C-CGGGCBC-SSSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCeEEEE-CCEEHHHHHHHh
Confidence 577899999999999977 9999999 899999999988
No 59
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=97.12 E-value=0.00039 Score=70.61 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=43.6
Q ss_pred CeEEEEEcCCCCCcCCCCCCccceeeCCCCchHHHHHHHHHHHhhhhCCCcCEEEeeC
Q 013550 79 KLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNAKYGCNVPLLLMNS 136 (441)
Q Consensus 79 kvavv~LaGGlGTRLG~~~PK~~l~v~~gktfLdl~~~qi~~l~~~~g~~iPl~IMtS 136 (441)
++.+|+||||.|||||.+.||.++++ .|+|++++.++++++.. ++ -.+++.|+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~ll~l-~GkPLi~~~l~~l~~~~---~~-~~IvVvt~ 55 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQFLRL-GNDPLWLYATKNLSSFY---PF-KKIVVTSS 55 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGGCEE-BTEEHHHHHHHHHHTTS---CC-SCEEEEES
T ss_pred ccEEEEECCCCCccCCCCCCcceEEE-CCeEHHHHHHHHHHccC---CC-CeEEEEcC
Confidence 57889999999999997789999999 89999999999987631 11 25677776
No 60
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=38.10 E-value=27 Score=21.57 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=14.6
Q ss_pred ceEEEEEEEEEcCCCCeeecCCCCee
Q 013550 405 NITLKGKVTIAAKSGEKLEIPDGAVL 430 (441)
Q Consensus 405 ~v~l~G~v~i~a~~~~~~~ip~g~~l 430 (441)
.|++-|.+++ .|.++.+||..||
T Consensus 4 ~VvIvGri~l---~gkp~v~PdreVl 26 (26)
T 2o8m_C 4 CVVIVGRIVL---SGKPAIIPKKXXX 26 (26)
T ss_dssp CBEEEEEEEC---SCCCEECCCC---
T ss_pred eEEEEEEEEE---CCceEEcCCcCCC
Confidence 3566677654 6778999998775
No 61
>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A
Probab=35.15 E-value=21 Score=32.09 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=17.8
Q ss_pred EEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCee
Q 013550 395 KVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVL 430 (441)
Q Consensus 395 ~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l 430 (441)
.+.|+|++|+++.+--.++|.+..+.++.|-+++.+
T Consensus 53 ~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~I 88 (213)
T 3kwd_A 53 NLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNI 88 (213)
T ss_dssp EEEESEEECTTCEECTTCEEEESSSCCEEECTTCEE
T ss_pred EEeCceEECCCCEEcCCcEEecCCCCceEECCCCEE
Confidence 445555565555555444444444444444444444
No 62
>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}
Probab=34.75 E-value=20 Score=31.77 Aligned_cols=39 Identities=28% Similarity=0.492 Sum_probs=23.9
Q ss_pred ceEEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeec
Q 013550 392 DSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLE 431 (441)
Q Consensus 392 ~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~ 431 (441)
..-++.|+|++|+++.+--.++|.+..+ ++.|-+++.+.
T Consensus 23 ~~a~I~g~V~IG~~~~I~~~~~I~~~~g-~i~IG~~~~I~ 61 (194)
T 3tv0_A 23 VESEIRGDVTIGPRTVIHPKARIIAEAG-PIVIGEGNLIE 61 (194)
T ss_dssp TTSEEESSEEECTTCEECTTCEEEESSS-CEEECTTCEEC
T ss_pred CCCEEeCCCEECCCCEECCCCEEccCCC-CeEECCCcccc
Confidence 4445677888888777766666655432 45555555553
No 63
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=31.47 E-value=76 Score=25.34 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhCCCCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC
Q 013550 140 HDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ 211 (441)
Q Consensus 140 ~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~ 211 (441)
.+..++.+.+..+ +..+|.+.-+|.. -|..|...+|+++|-|.++++.
T Consensus 55 ~~~~~~~l~~~~g---------~~tvP~vfi~g~~---------------igG~d~l~~l~~~G~L~~~l~~ 102 (114)
T 3h8q_A 55 GARVQEVLSEITN---------QKTVPNIFVNKVH---------------VGGCDQTFQAYQSGLLQKLLQE 102 (114)
T ss_dssp HHHHHHHHHHHHS---------CCSSCEEEETTEE---------------EESHHHHHHHHHHTHHHHHHHS
T ss_pred hHHHHHHHHHHhC---------CCccCEEEECCEE---------------EeCHHHHHHHHHCCCHHHHhcC
Confidence 3455566654322 3467777555532 2666788899999999999984
No 64
>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A
Probab=27.76 E-value=32 Score=31.75 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=24.4
Q ss_pred EEEeeeeEECcceEEEEEEEEEcCCCCeeecCCCCeec
Q 013550 394 LKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLE 431 (441)
Q Consensus 394 L~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~ 431 (441)
-+|.|++++|+++.+--.++|.+..+..+.|-+++.+.
T Consensus 72 a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig 109 (247)
T 1qre_A 72 ASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQ 109 (247)
T ss_dssp CEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEEC
T ss_pred CEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEEC
Confidence 35567888888877765566666555555666655553
No 65
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=26.90 E-value=75 Score=26.39 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHhCCCCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC-CCc
Q 013550 139 THDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKE 214 (441)
Q Consensus 139 T~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~-G~e 214 (441)
.+.+.+++++++.+ +.++|.+.-+|.. -|..|...+|+++|-|+.|+++ |++
T Consensus 60 ~~~~~r~~l~~~sg---------~~TvPqIFI~g~~---------------IGG~Ddl~~l~~~GeL~~lL~~~Gi~ 112 (118)
T 2wul_A 60 DDPELRQGIKDYSN---------WPTIPQVYLNGEF---------------VGGCDILLQMHQNGDLVEELKKLGIH 112 (118)
T ss_dssp SCHHHHHHHHHHHT---------CCSSCEEEETTEE---------------EECHHHHHHHHHHTHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHhcc---------CCCCCeEeECCEE---------------ECCHHHHHHHHHCCCHHHHHHHcCCc
Confidence 45688999988765 3457777555542 3788899999999999888764 665
No 66
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=25.87 E-value=78 Score=25.95 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=36.4
Q ss_pred EEEeeCCCChhHHHHHHHHhCCCCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHH
Q 013550 131 LLLMNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALIS 210 (441)
Q Consensus 131 l~IMtS~~T~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~ 210 (441)
+....-. .+++.++.|.+..+ |..+|.+.-+|. .-|..|...+|+++|-|+.+++
T Consensus 51 ~~~~dv~-~~~~~~~~l~~~sg---------~~tvP~vfI~g~---------------~iGG~d~l~~l~~~G~L~~~L~ 105 (121)
T 3gx8_A 51 FAAYNVL-EDPELREGIKEFSE---------WPTIPQLYVNKE---------------FIGGCDVITSMARSGELADLLE 105 (121)
T ss_dssp EEEEECT-TCHHHHHHHHHHHT---------CCSSCEEEETTE---------------EEESHHHHHHHHHHTHHHHHHH
T ss_pred EEEEEec-CCHHHHHHHHHHhC---------CCCCCeEEECCE---------------EEecHHHHHHHHHcCChHHHHH
Confidence 4443333 45677788876543 345777755543 2366778889999999998875
Q ss_pred C
Q 013550 211 Q 211 (441)
Q Consensus 211 ~ 211 (441)
.
T Consensus 106 ~ 106 (121)
T 3gx8_A 106 E 106 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}
Probab=23.42 E-value=29 Score=30.67 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=5.3
Q ss_pred eeEECcceEEE
Q 013550 399 DVWFGANITLK 409 (441)
Q Consensus 399 dv~fg~~v~l~ 409 (441)
++.+|.++.+.
T Consensus 78 ~~~I~~~~~I~ 88 (191)
T 3ixc_A 78 GTNIQDNTVVH 88 (191)
T ss_dssp TCEECTTCEEC
T ss_pred CCEECCCCEEe
Confidence 44444444444
No 68
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=22.03 E-value=1.1e+02 Score=25.31 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHhCCCCCceEEEeeccceeeecCCCcccCCCCCCCccccCcCCCcccchhhhhcChHHHHHHC-CCcEEE
Q 013550 139 THDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHGDVFPSLMNSGKLDALISQ-GKEYVF 217 (441)
Q Consensus 139 T~e~T~~~l~~~~~~~~~i~~f~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhGdi~~aL~~sgll~~l~~~-G~eyi~ 217 (441)
..+..++++++..+ +..+|.+.-+|. .-|..|-..+|+++|-|+.|++. |-..+.
T Consensus 54 d~~~~~~~l~~~~G---------~~tVP~IfI~G~---------------~IGG~ddl~~l~~~G~L~~lL~~~g~~~~~ 109 (127)
T 3l4n_A 54 HGEELQEYIKLVTG---------RGTVPNLLVNGV---------------SRGGNEEIKKLHTQGKLLESLQVWSDGKFS 109 (127)
T ss_dssp THHHHHHHHHHHHS---------CCSSCEEEETTE---------------ECCCHHHHHHHHHTTCHHHHHHHTCTTSCE
T ss_pred CHHHHHHHHHHHcC---------CCCcceEEECCE---------------EEcCHHHHHHHHHCCCHHHHHHHhcCCcEE
Confidence 34567888876543 356777755543 23667788899999999987654 655565
Q ss_pred EEcC
Q 013550 218 AANS 221 (441)
Q Consensus 218 v~nv 221 (441)
|...
T Consensus 110 ~~~~ 113 (127)
T 3l4n_A 110 VEQR 113 (127)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6554
No 69
>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A
Probab=20.04 E-value=38 Score=33.29 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=10.1
Q ss_pred EEeeeeEECcceEEEEEEEE
Q 013550 395 KVTGDVWFGANITLKGKVTI 414 (441)
Q Consensus 395 ~v~Gdv~fg~~v~l~G~v~i 414 (441)
.|..|++++.++.|.|.++|
T Consensus 67 ~I~~~a~I~~~~~I~g~~~I 86 (334)
T 2pig_A 67 MAFAGTEITGNARITQPCTL 86 (334)
T ss_dssp EEETTCEECTTCEEESSCEE
T ss_pred EEcCCcEECCCcEEeeeeeE
Confidence 33345555555555554444
Done!