Query 013551
Match_columns 441
No_of_seqs 168 out of 1095
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:59:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 1E-126 3E-131 986.9 25.9 435 1-440 326-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 2E-115 5E-120 939.6 26.9 399 2-410 282-680 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 1.2E-81 2.5E-86 686.0 27.9 387 3-406 256-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 3.9E-75 8.5E-80 632.4 22.0 374 4-404 243-624 (624)
5 TIGR00733 putative oligopeptid 100.0 9.1E-34 2E-38 304.0 20.9 301 76-402 255-588 (591)
6 COG1297 Predicted membrane pro 99.9 7.7E-22 1.7E-26 205.0 14.0 276 113-407 308-617 (624)
7 COG0628 yhhT Predicted permeas 83.8 10 0.00022 38.7 10.9 163 76-251 162-330 (355)
8 PF03169 OPT: OPT oligopeptide 81.1 20 0.00043 39.7 12.6 103 147-251 2-121 (624)
9 PRK10983 putative inner membra 63.8 66 0.0014 33.3 10.7 44 208-251 287-334 (368)
10 TIGR02872 spore_ytvI sporulati 60.9 1.2E+02 0.0026 30.1 11.9 40 212-251 286-329 (341)
11 PF03606 DcuC: C4-dicarboxylat 52.8 56 0.0012 34.9 8.3 92 118-220 251-342 (465)
12 PF01594 UPF0118: Domain of un 52.1 80 0.0017 31.3 8.9 52 200-251 260-316 (327)
13 TIGR00733 putative oligopeptid 51.0 3.1E+02 0.0067 30.4 13.8 108 147-255 2-117 (591)
14 TIGR03141 cytochro_ccmD heme e 49.0 50 0.0011 23.4 4.9 32 65-97 6-38 (45)
15 PF09512 ThiW: Thiamine-precur 45.2 1E+02 0.0022 28.0 7.3 27 230-256 90-117 (150)
16 PF04995 CcmD: Heme exporter p 43.9 66 0.0014 22.9 4.9 32 65-97 5-37 (46)
17 PF13829 DUF4191: Domain of un 38.2 43 0.00094 32.3 4.1 43 115-162 24-66 (224)
18 PRK12287 tqsA pheromone autoin 35.0 3.1E+02 0.0066 27.9 10.1 48 204-251 266-318 (344)
19 PF01864 DUF46: Putative integ 34.3 77 0.0017 29.5 5.0 31 294-324 41-71 (175)
20 PF10669 Phage_Gp23: Protein g 29.5 1.1E+02 0.0025 25.5 4.7 31 65-95 10-40 (121)
21 TIGR00727 ISP4_OPT small oligo 29.2 2.7E+02 0.0058 31.5 9.0 29 113-141 415-444 (681)
22 COG5438 Predicted multitransme 28.4 1.3E+02 0.0028 31.3 5.9 18 311-328 318-335 (385)
23 PRK13755 putative mercury tran 27.0 2.9E+02 0.0062 24.4 6.8 25 305-329 53-77 (139)
24 PRK00281 undecaprenyl pyrophos 26.8 6.3E+02 0.014 25.0 12.1 21 237-257 222-242 (268)
25 PRK00816 rnfD electron transpo 26.7 2.8E+02 0.0061 28.6 8.1 30 145-177 90-119 (350)
26 TIGR01946 rnfD electron transp 25.7 3.3E+02 0.0071 27.9 8.3 31 144-177 83-113 (327)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-126 Score=986.91 Aligned_cols=435 Identities=59% Similarity=1.169 Sum_probs=423.9
Q ss_pred CEEEEeehhhhhccCCCCCccccccchhhhccCCcccccceecCCCCccCHHHHHhcCCCcccHHHHHHHHHHHHHhhhh
Q 013551 1 MFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTST 80 (441)
Q Consensus 1 ~~~~ii~p~~yy~~N~~~~~~~P~~s~~~fd~~G~~Yn~s~il~~~~~l~~~~y~~ysp~~~s~~~~~~~~~~fa~~~a~ 80 (441)
+++||++|++||+ |+|+++||||+|+++||++|++||+|||+|+|++||.+|||+|||+|+|+.|+++||++||+++|+
T Consensus 326 l~~~IV~Pi~Y~~-n~~~a~~fPI~Ss~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~ 404 (761)
T KOG2262|consen 326 LFIYIVLPILYWT-NTYDAKYFPIFSSSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSAT 404 (761)
T ss_pred hhhhhhhhhHhhc-cceecceeceecCcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHH
Confidence 4689999999995 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchHHHHHHHHhhhccCcchHHHHhhhcCCCCchHHHHHHHHHHHHhheeEEEecCcccchhHHHHHHHHHHH
Q 013551 81 LTHVALFHGSAILEQSRSAMKNMKLDVHARLMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAW 160 (441)
Q Consensus 81 i~~~~l~~~k~i~~~~~~~~~~~~~D~h~~lm~~y~evP~wwy~~~~~~s~~l~i~~~~~~~~~~~lp~w~~ilal~l~~ 160 (441)
++|++|+|+||||++.|+.. ++++|+|.|+||+|||||+|||++++++++++++++|+.|+++.|+|||++++|+++++
T Consensus 405 i~Hv~Lf~gkdiw~~~~~~~-~k~~DiHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~ 483 (761)
T KOG2262|consen 405 IVHVALFNGKDIWQQTKKAF-NKKMDIHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAF 483 (761)
T ss_pred hhhheeeccHHHHHHHHhcc-ccCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHH
Confidence 99999999999999999884 67899999999999999999999999999999999999999888999999999999999
Q ss_pred HHhhhceeEEEeeCCCcchhHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHhhhhhcchhhhcCCChhhHHHHHhhhh
Q 013551 161 IVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGT 240 (441)
Q Consensus 161 i~~~p~g~i~a~tg~~p~l~~~~qli~G~~~pG~~~anl~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~f~aQiiGt 240 (441)
++++|.|+++|+||++|++|+++|+|.||+.||||+|||.||.||+.++.||+++++|+|+|||||+|||.||.+|++||
T Consensus 484 vf~iPigii~AtTNq~~GLNiitE~i~Gy~~PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~t 563 (761)
T KOG2262|consen 484 VFTIPIGIIQATTNQTPGLNIITEYIIGYIYPGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGT 563 (761)
T ss_pred HHhccHHHhhhhccCCccHHHHHHHHHHhhcCCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhccccCCccCCCCCCcccccccchhccchheeeeecCCcccCCCCchhHHHHHHHHHHHHHHHH
Q 013551 241 IVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPV 320 (441)
Q Consensus 241 ivg~~v~~~v~~~~l~~~~~i~~~~ll~~~~~~tcp~~~~~~~asv~Wg~igp~~lf~~g~~y~~~~~~fliG~~~pi~~ 320 (441)
+++++|+.+|.+|++.+++|+|+++ +++.||||..+++|+||++||++||+|+|+.+++|+.+.|+|++|+++|+++
T Consensus 564 ivs~~Vn~gv~~W~m~~I~~iC~~~---~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~v 640 (761)
T KOG2262|consen 564 IVAGFVNLGVAWWLMYSIPNICTTD---QNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLV 640 (761)
T ss_pred HhheeeeHHhHHHHHhcccccccCC---CCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHH
Confidence 9999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCccCCccchHHHHHhhccCCCCCCccchhHHHHHHHHHHHHHhcCccchhhhhhheehhhhhhhHHHHHHH
Q 013551 321 WVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFRYHKRWWQKYNYVLSAALDAGTAFMGVLL 400 (441)
Q Consensus 321 ~~l~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kynyvlaAgL~aG~ai~~lii 400 (441)
|+++|++|+++|.+++|+|+++.|.+++||++..|+++|+++|++|++++|||++.||+||||+||||||+|++++++++
T Consensus 641 w~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vli 720 (761)
T KOG2262|consen 641 WLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLI 720 (761)
T ss_pred HHHHHhcchhhhhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHh
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcccccCCCC-CCCCCCCCCCCcccccCCCCC
Q 013551 401 FFALQNNDINLKWWGTHVD-HCPLATCPTAPGIAVEGCPVF 440 (441)
Q Consensus 401 ~fa~~~~~~~~~WwGn~~~-~c~~~~~~~~~~~~~~~~~~~ 440 (441)
|||+|+++...+||||+++ +|+..+|+.+++..++++|.|
T Consensus 721 ffcv~~~~~~~~WWGn~~~~~c~~a~cp~~~~v~~~~~~~f 761 (761)
T KOG2262|consen 721 FFCVQYPGISLNWWGNTVSAGCDLAGCPTAKGVVVSGCPVF 761 (761)
T ss_pred hheeccCCCccccccCcCCCCCCccCCCcCCeeecCCCCCC
Confidence 9999999999999999974 899999999998888887764
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=2.3e-115 Score=939.57 Aligned_cols=399 Identities=37% Similarity=0.790 Sum_probs=388.3
Q ss_pred EEEEeehhhhhccCCCCCccccccchhhhccCCcccccceecCCCCccCHHHHHhcCCCcccHHHHHHHHHHHHHhhhhH
Q 013551 2 FIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTL 81 (441)
Q Consensus 2 ~~~ii~p~~yy~~N~~~~~~~P~~s~~~fd~~G~~Yn~s~il~~~~~l~~~~y~~ysp~~~s~~~~~~~~~~fa~~~a~i 81 (441)
++|+++|++|| +|+|+++||||+||++|||+|++||+|||+|+|++||+||||||||||+|++|+++|+++||+++|++
T Consensus 282 ~~~ii~P~lyy-~N~w~~~~lPi~s~~~fd~~G~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i 360 (681)
T TIGR00727 282 AFWIVIPAVYY-SNTWYCQYLPISSNGLYDNFGHSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMI 360 (681)
T ss_pred HHHHHHHHHHH-cccccccccCCccchhhhcCCCccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHH
Confidence 46789999999 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchHHHHHHHHhhhccCcchHHHHhhhcCCCCchHHHHHHHHHHHHhheeEEEecCcccchhHHHHHHHHHHHH
Q 013551 82 THVALFHGSAILEQSRSAMKNMKLDVHARLMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWI 161 (441)
Q Consensus 82 ~~~~l~~~k~i~~~~~~~~~~~~~D~h~~lm~~y~evP~wwy~~~~~~s~~l~i~~~~~~~~~~~lp~w~~ilal~l~~i 161 (441)
+|++|+|||||++++|+ ++++|+|.|+||+|||||+|||++++++++++++++++.++ +++|||++++|++++++
T Consensus 361 ~h~~l~~~~~i~~~~~~---~~~~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~~~v~~~~--t~lP~W~~~lal~l~~i 435 (681)
T TIGR00727 361 THSIIVHGKLLFNALKD---DDYPDPHSNLMKAYKEVPDWWYLAVFLGFFGMGIATVEHWP--TETPVWGLFVCLIFNFV 435 (681)
T ss_pred HHHHHHhhHHHHHHHhc---CCCCChhHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHH
Confidence 99999999999999974 56789999999999999999999999999999999999885 56999999999999999
Q ss_pred HhhhceeEEEeeCCCcchhHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHhhhhhcchhhhcCCChhhHHHHHhhhhh
Q 013551 162 VTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTI 241 (441)
Q Consensus 162 ~~~p~g~i~a~tg~~p~l~~~~qli~G~~~pG~~~anl~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~f~aQiiGti 241 (441)
+.+|.|+++|+||+++++|+++|+|+|++.||||++||+||++++++.+||.++++|||+|||||+|||+||.+|++||+
T Consensus 436 ~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl 515 (681)
T TIGR00727 436 FLIPTTILQATTNISFGLNVLTEFIVGYALPGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATI 515 (681)
T ss_pred HHHhhhheEeecCCccchhHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccccCCccCCCCCCcccccccchhccchheeeeecCCcccCCCCchhHHHHHHHHHHHHHHHHH
Q 013551 242 VSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVW 321 (441)
Q Consensus 242 vg~~v~~~v~~~~l~~~~~i~~~~ll~~~~~~tcp~~~~~~~asv~Wg~igp~~lf~~g~~y~~~~~~fliG~~~pi~~~ 321 (441)
+|++|+++|++|++++++|+|+++ |+++||||+.+++|++|++||++||+|+|++|++|+.++|+|++|+++|+++|
T Consensus 516 ~~~~v~~~v~~~~l~~i~~~c~~~---~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~ 592 (681)
T TIGR00727 516 WQIFVQIGVLNWAIGNIDNFCTAD---QNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFW 592 (681)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCC---CCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCccCCccchHHHHHhhccCCCCCCccchhHHHHHHHHHHHHHhcCccchhhhhhheehhhhhhhHHHHHHHH
Q 013551 322 VLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFRYHKRWWQKYNYVLSAALDAGTAFMGVLLF 401 (441)
Q Consensus 322 ~l~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kynyvlaAgL~aG~ai~~lii~ 401 (441)
+++|++|| +++|++|.|+++.+.+++||+++.|++++.++|+++|+|+||||++||+||||++|||||+|++++++++|
T Consensus 593 ~~~r~~P~-~~~~~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iif 671 (681)
T TIGR00727 593 LVWKKWPK-FYPRYLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIF 671 (681)
T ss_pred HHHHhcch-hhhhhCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHhe
Confidence 99999996 58899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCC
Q 013551 402 FALQNNDIN 410 (441)
Q Consensus 402 fa~~~~~~~ 410 (441)
|++++++.+
T Consensus 672 f~v~~~~~~ 680 (681)
T TIGR00727 672 FCLQLKDTA 680 (681)
T ss_pred eEEEeCCCC
Confidence 999998753
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=1.2e-81 Score=685.95 Aligned_cols=387 Identities=42% Similarity=0.801 Sum_probs=361.9
Q ss_pred EEEeehhhhhccCCCCCccccccchhhhccCCccccc-ceecCCC-CccCHHHHHhcCCCcccHHHHHHHHHHHHHhhhh
Q 013551 3 IYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDT-TKILTPQ-YDLNIPAYNSYGKLYLSPLFALSIGSGFARFTST 80 (441)
Q Consensus 3 ~~ii~p~~yy~~N~~~~~~~P~~s~~~fd~~G~~Yn~-s~il~~~-~~l~~~~y~~ysp~~~s~~~~~~~~~~fa~~~a~ 80 (441)
.|++.|++||+ |+|+++++|++|++.||++|.+||. +++++++ .++|+++|++|||+|++++| |++.||+++++
T Consensus 256 ~~ii~P~l~~~-n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~ 331 (654)
T TIGR00728 256 FGIVLPILYYK-NTWPADADPIDSSSTIDSTGVRYNSVGLIVVDGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDT 331 (654)
T ss_pred HHHHHHHHHhc-CccccccCCCcchhhhcCCCceeeeeeEEEeCCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHH
Confidence 46889999995 9999999999999999999999999 9999988 79999999999999999999 99999999999
Q ss_pred HHHHHHHhchHHHHHHHHhhhccCcchHHHHhhhc--------CCCCchHHHHHHHHHHHHhheeEEEecCcccchhHHH
Q 013551 81 LTHVALFHGSAILEQSRSAMKNMKLDVHARLMKSY--------KQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGM 152 (441)
Q Consensus 81 i~~~~l~~~k~i~~~~~~~~~~~~~D~h~~lm~~y--------~evP~wwy~~~~~~s~~l~i~~~~~~~~~~~lp~w~~ 152 (441)
++|++++|+|++++++|+.. ++.+|.|.|+||+| +|||+|||+.++++++++++++++.++.+.++|||++
T Consensus 332 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ 410 (654)
T TIGR00728 332 IYSFALAHGRDIISARRDHY-KLGRDDHVRLLSRDEDLKVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGV 410 (654)
T ss_pred HHHHHHHhhHHHHHHHHHhh-hccCCCChHHHhhcccccccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHH
Confidence 99999999999999998763 34567777776666 9999999999999999999988888865567999999
Q ss_pred HHHHHHHHHHhhhceeEEEeeCCCcchhHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHhhhhhcchhhhcCCChhhH
Q 013551 153 LFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCM 232 (441)
Q Consensus 153 ilal~l~~i~~~p~g~i~a~tg~~p~l~~~~qli~G~~~pG~~~anl~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~ 232 (441)
++++++++++++|.++++|+||.+.++++++|+++|++.||+|++||+++++++++++||.|++||||+|||+|+|||+|
T Consensus 411 ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~ 490 (654)
T TIGR00728 411 IVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYILPGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQ 490 (654)
T ss_pred HHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeecCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhhccccCCccCCCCCCcccccccchhccchheeeeecCCcccCCCCchhHHHHHHHH
Q 013551 233 YTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLV 312 (441)
Q Consensus 233 f~aQiiGtivg~~v~~~v~~~~l~~~~~i~~~~ll~~~~~~tcp~~~~~~~asv~Wg~igp~~lf~~g~~y~~~~~~fli 312 (441)
|.+|++|+++|++|++++++|+.+++++ ++++|+||.+++++++|++||++||+ +|+++++|+.+.|++++
T Consensus 491 f~~Qiig~~vg~~v~~~v~~~~~~~~~~--------~~~~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~ 561 (654)
T TIGR00728 491 FAAQLIGTIVGSLVNAPVLEWLYHAIGN--------QNNNFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLV 561 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCCCccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHH
Confidence 9999999999999999999999876653 55789999999999999999999999 99988999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccCCccchHHHHHhhccCCCCCCccchhHHHHHHHHHHHHHhcCccch--hhhhhheehhhh
Q 013551 313 GAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFRYHKRWW--QKYNYVLSAALD 390 (441)
Q Consensus 313 G~~~pi~~~~l~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~--~kynyvlaAgL~ 390 (441)
| ++|++.++++|++|| +.|++|+|+++.+...+||.++.++.++.++|.++++++|||+++|| +||||++|||||
T Consensus 562 G-~~~i~~~~~~~~~p~--~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~ 638 (654)
T TIGR00728 562 G-VGAVLVWLVRKLFPK--WIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLI 638 (654)
T ss_pred H-HHHHHHHHHHHHccc--hhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHh
Confidence 9 899999999999995 67899999988888889989999999999999999999999998887 999999999999
Q ss_pred hhhHHHHHHHHHHHHh
Q 013551 391 AGTAFMGVLLFFALQN 406 (441)
Q Consensus 391 aG~ai~~lii~fa~~~ 406 (441)
|||+|+++++||++++
T Consensus 639 ~G~al~gviiff~~~~ 654 (654)
T TIGR00728 639 AGEALAGVIIFFCLGL 654 (654)
T ss_pred hhHHHHHHHHHHhccC
Confidence 9999999999999875
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=3.9e-75 Score=632.43 Aligned_cols=374 Identities=39% Similarity=0.751 Sum_probs=348.4
Q ss_pred EEeehhhhhccCCCCCccccccchhhhccCCcccccceecCCCCccCHHHHHhcCCCcccHHHHHHHHHHHHHhhhhHHH
Q 013551 4 YIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTH 83 (441)
Q Consensus 4 ~ii~p~~yy~~N~~~~~~~P~~s~~~fd~~G~~Yn~s~il~~~~~l~~~~y~~ysp~~~s~~~~~~~~~~fa~~~a~i~~ 83 (441)
|++.|++||+.|.|+++++|++|+++||++|+ +|+++|+++|++||+++.++.+.++|+..|+.++++++|
T Consensus 243 ~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~i~~ 313 (624)
T PF03169_consen 243 GIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS---------SDGTLNWTKYIGYGPMYGSGLFALSYGWSFAALTASIVH 313 (624)
T ss_pred HhcCCeeeeeccccCCccccccchhhhhhcCc---------cccccCHHHHHHHHHHHHhHHHHHhhcccchhhHHHHHH
Confidence 68999999933999999999999999999999 889999999999999999999999999999999999999
Q ss_pred HHHHhchHHHHHHHHh------hhccCcchHHHHhhhcCCCCchHHHHHHHHHHHHhheeEEEecCcccchhHHHHHHHH
Q 013551 84 VALFHGSAILEQSRSA------MKNMKLDVHARLMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFA 157 (441)
Q Consensus 84 ~~l~~~k~i~~~~~~~------~~~~~~D~h~~lm~~y~evP~wwy~~~~~~s~~l~i~~~~~~~~~~~lp~w~~ilal~ 157 (441)
.+++|+|++++++|+. .+++++|+|+|+||+|||+|+|||+.++++++++++++++.+..++++|+|+.+++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~ 393 (624)
T PF03169_consen 314 AILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAIL 393 (624)
T ss_pred HHHHHHHHHHhhhhhhcccccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHH
Confidence 9999999999888643 1345789999999999999999999999999999999998887557899999999999
Q ss_pred HHHHHhhhceeEEEeeCCCc--chhHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHhhhhhcchhhhcCCChhhHHHH
Q 013551 158 LAWIVTLPIGVIQATTNQQP--GYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTA 235 (441)
Q Consensus 158 l~~i~~~p~g~i~a~tg~~p--~l~~~~qli~G~~~pG~~~anl~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~f~a 235 (441)
+++++++|.++++|+||++| ++++++|+++|++.||+|++||+++++++++++||.|++||||+|||+|+|||+||.+
T Consensus 394 la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~ 473 (624)
T PF03169_consen 394 LAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYA 473 (624)
T ss_pred HHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999999999999999977 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHHHHhhccccCCccCCCCCCcccccccchhccchheeeeecCCcccCCCCchhHHHHHHHHHHH
Q 013551 236 QLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAV 315 (441)
Q Consensus 236 QiiGtivg~~v~~~v~~~~l~~~~~i~~~~ll~~~~~~tcp~~~~~~~asv~Wg~igp~~lf~~g~~y~~~~~~fliG~~ 315 (441)
|++|+++|++|++++++++ +.++.|.++ +++.++||..|++++++++||++||+| +.+|..+++++++|++
T Consensus 474 Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~~~~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~ 544 (624)
T PF03169_consen 474 QIIGTIIGAFVAVAVMRLL--NQAYPCGPD---QGDSFSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAV 544 (624)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhccCcc---ccccCcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHH
Confidence 9999999999999999776 677888776 666899999999999999999999877 6899999999999999
Q ss_pred HHHHHHHHHhhcCCCccCCccchHHHHHhhccCCCCCCccchhHHHHHHHHHHHHHhcCccchhhhhhheehhhhhhhHH
Q 013551 316 LPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFRYHKRWWQKYNYVLSAALDAGTAF 395 (441)
Q Consensus 316 ~pi~~~~l~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kynyvlaAgL~aG~ai 395 (441)
+|++.++++|++|+ ++++.|...+++.++.++++++++|.++++++|||+++||+||||++|||||+||++
T Consensus 545 ~~i~~~l~~~~~P~---------~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l 615 (624)
T PF03169_consen 545 LPILFWLLQRKFPS---------PLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEAL 615 (624)
T ss_pred HHHHHHHHHhhCCh---------hheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHH
Confidence 99999999999994 244556666777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 013551 396 MGVLLFFAL 404 (441)
Q Consensus 396 ~~lii~fa~ 404 (441)
+++++++++
T Consensus 616 ~~li~~~~~ 624 (624)
T PF03169_consen 616 MGLIIAFLV 624 (624)
T ss_pred HHHHHHHhC
Confidence 999998763
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=9.1e-34 Score=304.00 Aligned_cols=301 Identities=15% Similarity=0.215 Sum_probs=217.4
Q ss_pred HhhhhHHHHHHHhchHHHHHHHHhhhccC-cchHHHHhhhcCCCCchHHHHHHHHHHHHhheeEEEecCcccch------
Q 013551 76 RFTSTLTHVALFHGSAILEQSRSAMKNMK-LDVHARLMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQ------ 148 (441)
Q Consensus 76 ~~~a~i~~~~l~~~k~i~~~~~~~~~~~~-~D~h~~lm~~y~evP~wwy~~~~~~s~~l~i~~~~~~~~~~~lp------ 148 (441)
..++.+... +...|.+++.+|+..++.+ ++.+.+..|+.+|+|.|+...++++. ++.+ ....++.|
T Consensus 255 m~~~gl~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dip~~~v~~~~~~~-~~~~-----~~~~~~~~~~~~~~ 327 (591)
T TIGR00733 255 IVVAALWTL-LKLRGPIARGIKAGLEAARRRQAGEAVLRTEEDLPINIVLTLVALF-VIPL-----ADFLLYAPILHNIG 327 (591)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHHHHH-HHHH-----HHHhcCCcccchhh
Confidence 334444444 5667877777765432211 11112345778999999754443322 2211 01123333
Q ss_pred --h-HHHHHHHHHHHHHhhhceeEEEe--eCCCc--chhHHHHhhhhhcc------------CCchhHHHHHHHHHHHHH
Q 013551 149 --W-WGMLFAFALAWIVTLPIGVIQAT--TNQQP--GYDIIAQFMIGYVL------------PGKPIANLLFKIYGRIST 209 (441)
Q Consensus 149 --~-w~~ilal~l~~i~~~p~g~i~a~--tg~~p--~l~~~~qli~G~~~------------pG~~~anl~f~~~~~~~~ 209 (441)
+ .+.+++++++++++...+++.|+ |+.|| ++++++|++++.+. |+...+|++.+++.+.++
T Consensus 328 ~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa 407 (591)
T TIGR00733 328 MAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAA 407 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHH
Confidence 3 57789999999999999999999 77799 89999999999998 345678999999999999
Q ss_pred HHHHhhhhhcchhhhcCCChhhHHHHHhhhhhhhHHHHHHHHHHHHhhccccCCccCCCCCCcccccccchhccchheee
Q 013551 210 IHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWG 289 (441)
Q Consensus 210 ~qa~~~~~DlKlG~y~k~pPR~~f~aQiiGtivg~~v~~~v~~~~l~~~~~i~~~~ll~~~~~~tcp~~~~~~~asv~Wg 289 (441)
+||.|++||||+||+++.+||+||++|++|+++|+++.+++++. +.+.+++..+.-.++++.|++|++. +|.
T Consensus 408 ~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~l-l~~ayg~~~~~~~~~~~~l~APqA~-------l~~ 479 (591)
T TIGR00733 408 AISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNL-LIKAYGIAGTPTAKGENALPAPQAF-------LMA 479 (591)
T ss_pred HHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccCCCccccCCCHHH-------HHH
Confidence 99999999999999999999999999999999999999999954 4455555432111245668999554 333
Q ss_pred eecCCcccCCCCchhHHHHHH-HHHHHHHHHHHHHHhhcCCCccCCccchHHHHHhhccCCCCCCccchhHHHHHHHHHH
Q 013551 290 LIGPRRLFGPGGMYRNLVWLF-LVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNY 368 (441)
Q Consensus 290 ~igp~~lf~~g~~y~~~~~~f-liG~~~pi~~~~l~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~ 368 (441)
.+. +-++++ . ++|.+ .+|+++.+++.++++..+|+ + +++..|.+.+|++++.|. +++..+++|.+..+
T Consensus 480 ava-~gi~~~-~----l~~~~i~~ga~~g~~l~~~~~~~~~~-~-~~~~~p~lavgig~yLP~---~~s~~~~iG~li~~ 548 (591)
T TIGR00733 480 AVT-EGVFTG-T----LEWTMVFIGAGIGIALIIIDEILAKR-G-SKFRTPVMAVGVGIYLPL---SLGVPILLGAFLAR 548 (591)
T ss_pred HHH-hhhcCC-C----ccHHHHHHHHHHHHHHHHHHHHhhhc-c-cccCCchhHHHHHhhcch---hHHHHHHHHHHHHH
Confidence 333 223332 2 56755 47788888888887666642 2 345557888999998874 47889999999999
Q ss_pred HHHhcCccc------hhhhhhheehhhhhhhHHHHHHHHH
Q 013551 369 FVFRYHKRW------WQKYNYVLSAALDAGTAFMGVLLFF 402 (441)
Q Consensus 369 ~~rr~~~~w------~~kynyvlaAgL~aG~ai~~lii~f 402 (441)
+|+||+++- -++|.+++||||++||+++++++..
T Consensus 549 ~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~ 588 (591)
T TIGR00733 549 ILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAA 588 (591)
T ss_pred HHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHH
Confidence 999976531 1467899999999999999998864
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.87 E-value=7.7e-22 Score=205.00 Aligned_cols=276 Identities=17% Similarity=0.174 Sum_probs=187.5
Q ss_pred hhcCCCCchHHHHHHHHHHHHhheeEEEec-------CcccchhHHHHHHHHHHHHHhhhceeEEEeeCC--Cc--chhH
Q 013551 113 KSYKQVPQWWFYVLLLGSIGLSLLMSFVWK-------DEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQ--QP--GYDI 181 (441)
Q Consensus 113 ~~y~evP~wwy~~~~~~s~~l~i~~~~~~~-------~~~~lp~w~~ilal~l~~i~~~p~g~i~a~tg~--~p--~l~~ 181 (441)
|+++|+|.-|-...++...+..++...+.- ....+-.-+.++++++++.+....|++.|..|. +| ++.+
T Consensus 308 rte~Dl~~~~~~~~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i 387 (624)
T COG1297 308 RTERDLPPKLVLLVLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGI 387 (624)
T ss_pred chhhcCChhhHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHH
Confidence 678999988855555443332222221111 111233556778888899999999999988776 34 6777
Q ss_pred HHHhhhhhcc------------CCc----hhHHHHHHHHHHHHHHHHHhhhhhcchhhhcCCChhhHHHHHhhhhhhhHH
Q 013551 182 IAQFMIGYVL------------PGK----PIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGV 245 (441)
Q Consensus 182 ~~qli~G~~~------------pG~----~~anl~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~f~aQiiGtivg~~ 245 (441)
+++++.+.++ |.. ...+++..++...++.++.|++||||+||+++..||+|+++|++|++++++
T Consensus 388 ~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~al 467 (624)
T COG1297 388 LSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGAL 467 (624)
T ss_pred HHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhh
Confidence 7766653322 322 256778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCccCCCCCCcccccccchhccchheeeeecCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 013551 246 VNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSK 325 (441)
Q Consensus 246 v~~~v~~~~l~~~~~i~~~~ll~~~~~~tcp~~~~~~~asv~Wg~igp~~lf~~g~~y~~~~~~fliG~~~pi~~~~l~r 325 (441)
+...|++. +++.+++..+...++.+ .+. .|...++.+.-|+++ ..-.+..+..+..+|+.+-.+-+.++|
T Consensus 468 vi~pvL~l-l~~aYgf~ga~~r~~~~-l~a--pqa~lma~ia~Gvf~------~~lew~mi~~g~~~gi~lI~id~~l~~ 537 (624)
T COG1297 468 VIAPVLEL-LNKAYGFAGAPPRQGMD-LAA--PQATLMATIAKGVFT------GNLEWSMILAGAGIGIVLIGIDERLKG 537 (624)
T ss_pred hHHHHHHH-HHHHhCcCCCCCCCCCC-Ccc--hHHHHHHHHhcccCC------CCcchHHHHHHHhHhheeeeccHHHhc
Confidence 99999965 45566664322111122 344 477778888665543 323344444343444444444444433
Q ss_pred hcCCCccCCccchHHHHHhhccCCCCCCccchhHHHHHHHHHHHHHhcCc-------cchhhhhhheehhhhhhhHHHHH
Q 013551 326 VFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFRYHK-------RWWQKYNYVLSAALDAGTAFMGV 398 (441)
Q Consensus 326 ~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~-------~w~~kynyvlaAgL~aG~ai~~l 398 (441)
+ + .+..+|++.+|++.+.|. ..+..+++|.+..+.+.|+.. +--++..+++||||+.||++.++
T Consensus 538 ~-----~-~~~~lpvlAvGvGIylP~---s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gv 608 (624)
T COG1297 538 R-----G-GKLRLPVLAVGVGIYLPP---SLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGV 608 (624)
T ss_pred C-----C-ccccccceeeeeeeecCh---hhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHH
Confidence 2 2 234568889999997763 367889999999988877633 22345779999999999999999
Q ss_pred HHHHHHHhC
Q 013551 399 LLFFALQNN 407 (441)
Q Consensus 399 ii~fa~~~~ 407 (441)
++.......
T Consensus 609 i~a~ii~~~ 617 (624)
T COG1297 609 ITALIIVGS 617 (624)
T ss_pred HHHHHheec
Confidence 987655544
No 7
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=83.77 E-value=10 Score=38.71 Aligned_cols=163 Identities=13% Similarity=0.172 Sum_probs=86.8
Q ss_pred HhhhhHHHHHHHhchHHHHHHHHhhhccCcchHHHHhh-hcCCCCchHHHHHHHHHHHHhheeEEEecCcccchhHHHHH
Q 013551 76 RFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMK-SYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLF 154 (441)
Q Consensus 76 ~~~a~i~~~~l~~~k~i~~~~~~~~~~~~~D~h~~lm~-~y~evP~wwy~~~~~~s~~l~i~~~~~~~~~~~lp~w~~il 154 (441)
.+.-.++..++.+++++++.+++...++.++..++..+ -++.+-.+...- .+++++.++.+...+. -.++| ++.++
T Consensus 162 ~l~~~~~ff~L~d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~gq-~i~al~~gi~~~igl~-ilgvp-~alll 238 (355)
T COG0628 162 LLVLVLLFFLLLDGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRGQ-VLVALIVGILTGIGLL-ILGVP-YALLL 238 (355)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHccc-HHHHH
Confidence 34445566667889999988876543332333333322 244554544333 3344444433222110 12343 24445
Q ss_pred HHHHHHHHhhhceeEEEeeCCCcchhHHHHhhhhhccCCchhHHHHHHHHHHHHHHH-HHhhhhhcchhhhcCCChhhHH
Q 013551 155 AFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIH-ALSFLSDLKLGHYMKIPPRCMY 233 (441)
Q Consensus 155 al~l~~i~~~p~g~i~a~tg~~p~l~~~~qli~G~~~pG~~~anl~f~~~~~~~~~q-a~~~~~DlKlG~y~k~pPR~~f 233 (441)
+++.++.-.+|.. .+.+..+--.+.++...| +.. ...-.++.....| -.+++...=+|+-+|++|=..+
T Consensus 239 gil~g~~~lIP~i--------G~~i~~ip~~i~al~~~~-~~~-~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~il 308 (355)
T COG0628 239 GLLAGLLSLIPYI--------GPVIGLIPAVIIALLQGG-PWG-ALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVIL 308 (355)
T ss_pred HHHHHHHHhhccc--------ccHHHHHHHHHHHHHhcc-hHH-HHHHHHHHHHHHHHhcceeccccccccCCCCHHHHH
Confidence 5555444444410 122344444455555554 322 2233344444443 4567888889999999999999
Q ss_pred HHHhhhh----hhhHHHHHHHH
Q 013551 234 TAQLVGT----IVSGVVNLGVA 251 (441)
Q Consensus 234 ~aQiiGt----ivg~~v~~~v~ 251 (441)
.+.+.|. ++|.++++.+.
T Consensus 309 isll~g~~l~G~~G~ila~pl~ 330 (355)
T COG0628 309 LSLLGGGSLFGFVGLILAPPLA 330 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877 45555555554
No 8
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=81.15 E-value=20 Score=39.69 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHHHHhhhceeEEEeeCCCcchhHHHHhhh----hhc---------cCC--chhHHHHHHHHHHHHHH-
Q 013551 147 LQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMI----GYV---------LPG--KPIANLLFKIYGRISTI- 210 (441)
Q Consensus 147 lp~w~~ilal~l~~i~~~p~g~i~a~tg~~p~l~~~~qli~----G~~---------~pG--~~~anl~f~~~~~~~~~- 210 (441)
+.+-+++++++++.+++....+..-.+|..+..+.+.|++. -.+ .|| ++..|.+....+..+..
T Consensus 2 lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~~ 81 (624)
T PF03169_consen 2 LTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGGM 81 (624)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 34455566666666666666665555555554444444442 111 133 55666666655554444
Q ss_pred -HHHhhhhhcchhhhcCCChhhHHHHHhhhhhhhHHHHHHHH
Q 013551 211 -HALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVA 251 (441)
Q Consensus 211 -qa~~~~~DlKlG~y~k~pPR~~f~aQiiGtivg~~v~~~v~ 251 (441)
.+.+++.-+..-.+++ .+.-+.-|+.-++.+.++.++..
T Consensus 82 ~~a~~~i~~ipa~~~~~--~~~~~~~~~l~~~~~~~lG~~~a 121 (624)
T PF03169_consen 82 AYAAGFIAAIPALLFLG--QPFSFGYLILWTLSTQLLGYGFA 121 (624)
T ss_pred hhhhhHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHhhh
Confidence 5666665544444443 33356666666666666655543
No 9
>PRK10983 putative inner membrane protein; Provisional
Probab=63.79 E-value=66 Score=33.30 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=32.7
Q ss_pred HHHHHHhhhhhcchhhhcCCChhhHHHHHhhhhh----hhHHHHHHHH
Q 013551 208 STIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTI----VSGVVNLGVA 251 (441)
Q Consensus 208 ~~~qa~~~~~DlKlG~y~k~pPR~~f~aQiiGti----vg~~v~~~v~ 251 (441)
...+..++++-.=+|.-.++||=..+.+.+.|.. +|.++.+.++
T Consensus 287 vv~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i~ 334 (368)
T PRK10983 287 VVGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVL 334 (368)
T ss_pred HHHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888888899999999999999988875 3444555444
No 10
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=60.95 E-value=1.2e+02 Score=30.14 Aligned_cols=40 Identities=8% Similarity=0.092 Sum_probs=30.8
Q ss_pred HHhhhhhcchhhhcCCChhhHHHHHhhhhhh----hHHHHHHHH
Q 013551 212 ALSFLSDLKLGHYMKIPPRCMYTAQLVGTIV----SGVVNLGVA 251 (441)
Q Consensus 212 a~~~~~DlKlG~y~k~pPR~~f~aQiiGtiv----g~~v~~~v~ 251 (441)
-.+.++-.=.|.-+++||=.++.+.+.|.-+ |.++.+.++
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~ 329 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIV 329 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777889999999999999999988744 555555444
No 11
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=52.81 E-value=56 Score=34.88 Aligned_cols=92 Identities=16% Similarity=0.127 Sum_probs=42.6
Q ss_pred CCchHHHHHHHHHHHHhheeEEEecCcccchhHHHHHHHHHHHHHhhhceeEEEeeCCCcchhHHHHhhhhhccCCchhH
Q 013551 118 VPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIA 197 (441)
Q Consensus 118 vP~wwy~~~~~~s~~l~i~~~~~~~~~~~lp~w~~ilal~l~~i~~~p~g~i~a~tg~~p~l~~~~qli~G~~~pG~~~a 197 (441)
-++++|+.+.++.+++-+... ...-.+..|+.. -...+.++.++..+.+...++.++. ..++-.. +-.+
T Consensus 251 ~~~~~~~~~~~l~~~~li~g~--~~~~~~~~~~~~-~~~~~fl~~~ii~~~i~~~~~~~~~--~~~~~F~------~G~~ 319 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIYGF--SFVIIKIKWYFP-EIAALFLIIGIIIGLIRHRSGKSPN--EIVKAFF------KGMG 319 (465)
T ss_pred cccceeehHHHHHHHHHHhch--hhhhccccccHH-HHHHHHHHHHHHHHHHHhhccCCHh--HHHHHHH------HHHH
Confidence 568889999998888755420 000112333332 2222333444444444444555442 1112111 1134
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Q 013551 198 NLLFKIYGRISTIHALSFLSDLK 220 (441)
Q Consensus 198 nl~f~~~~~~~~~qa~~~~~DlK 220 (441)
+++..+....-+.-+.-+++|.|
T Consensus 320 ~~~~~a~vVgla~ai~v~~~~~~ 342 (465)
T PF03606_consen 320 DMLSFALVVGLARAISVFMEGGK 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc
Confidence 44444444444445556667765
No 12
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=52.15 E-value=80 Score=31.34 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHH-hhhhhcchhhhcCCChhhHHHHHhhhhh----hhHHHHHHHH
Q 013551 200 LFKIYGRISTIHAL-SFLSDLKLGHYMKIPPRCMYTAQLVGTI----VSGVVNLGVA 251 (441)
Q Consensus 200 ~f~~~~~~~~~qa~-~~~~DlKlG~y~k~pPR~~f~aQiiGti----vg~~v~~~v~ 251 (441)
....+......|-. ++++-.=.|+-+|+||=..+.+.++|.. +|.++++.++
T Consensus 260 ~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~~g~~~fG~~G~il~~pi~ 316 (327)
T PF01594_consen 260 LIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVIIGGYLFGFIGLILAPPIL 316 (327)
T ss_pred HHHHHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444455555544 5556666799999999999999999874 4556666555
No 13
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=51.02 E-value=3.1e+02 Score=30.42 Aligned_cols=108 Identities=10% Similarity=0.044 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHHHHHhhhceeEEEeeCCCcchhHHHHhh----hhhccCCchhHHHHHHHHHHHHHHHHHhhhhhc---
Q 013551 147 LQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFM----IGYVLPGKPIANLLFKIYGRISTIHALSFLSDL--- 219 (441)
Q Consensus 147 lp~w~~ilal~l~~i~~~p~g~i~a~tg~~p~l~~~~qli----~G~~~pG~~~anl~f~~~~~~~~~qa~~~~~Dl--- 219 (441)
+.+-+++++++++.+++....++-=.+|..++.++.+-++ .-.+.+.++..|.+..+.+..+.+.+. +..-+
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5667888888888888888888888888887655544443 333445577777766666554443332 22111
Q ss_pred -chhhhcCCChhhHHHHHhhhhhhhHHHHHHHHHHHH
Q 013551 220 -KLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWML 255 (441)
Q Consensus 220 -KlG~y~k~pPR~~f~aQiiGtivg~~v~~~v~~~~l 255 (441)
.+|..-+.|...+...=+.|.++|.+.....-|.++
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I 117 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFV 117 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233332345566666667888888888887654443
No 14
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=49.01 E-value=50 Score=23.42 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=22.3
Q ss_pred HHHH-HHHHHHHHhhhhHHHHHHHhchHHHHHHH
Q 013551 65 LFAL-SIGSGFARFTSTLTHVALFHGSAILEQSR 97 (441)
Q Consensus 65 ~~~~-~~~~~fa~~~a~i~~~~l~~~k~i~~~~~ 97 (441)
.|+| +|++++..+...+.+... .+|.+.+.++
T Consensus 6 ~yVW~sYg~t~l~l~~li~~~~~-~~r~~~~~l~ 38 (45)
T TIGR03141 6 FYVWLAYGITALVLAGLILWSLL-DRRRLLRELR 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4665 699999999998888855 4444444443
No 15
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=45.21 E-value=1e+02 Score=27.96 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=22.6
Q ss_pred hhHHHHHhhhh-hhhHHHHHHHHHHHHh
Q 013551 230 RCMYTAQLVGT-IVSGVVNLGVAWWMLE 256 (441)
Q Consensus 230 R~~f~aQiiGt-ivg~~v~~~v~~~~l~ 256 (441)
..-..+|++|| ++|+++++.++.+++.
T Consensus 90 ~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 90 WAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 45668899998 8899999999988764
No 16
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=43.93 E-value=66 Score=22.89 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=22.8
Q ss_pred HHHH-HHHHHHHHhhhhHHHHHHHhchHHHHHHH
Q 013551 65 LFAL-SIGSGFARFTSTLTHVALFHGSAILEQSR 97 (441)
Q Consensus 65 ~~~~-~~~~~fa~~~a~i~~~~l~~~k~i~~~~~ 97 (441)
.|+| +|++++.++...+++... .+|.+.+.++
T Consensus 5 ~yVW~sYg~t~~~l~~l~~~~~~-~~r~~~~~l~ 37 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLIVWSLR-RRRRLRKELK 37 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4565 699999999999999854 4555554443
No 17
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=38.22 E-value=43 Score=32.30 Aligned_cols=43 Identities=16% Similarity=0.372 Sum_probs=22.6
Q ss_pred cCCCCchHHHHHHHHHHHHhheeEEEecCcccchhHHHHHHHHHHHHH
Q 013551 115 YKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIV 162 (441)
Q Consensus 115 y~evP~wwy~~~~~~s~~l~i~~~~~~~~~~~lp~w~~ilal~l~~i~ 162 (441)
+|.+++|..++. ++.+++++++.. -++.+|+.+++++.++++.
T Consensus 24 dp~l~~~ml~a~-l~~~~v~v~ig~----l~~~~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 24 DPKLPWLMLGAF-LGPIAVFVLIGL----LFGSWWYWLIIGILLGLLA 66 (224)
T ss_pred CcchHHHHHHHH-HHHHHHHHHHHH----HHccHHHHHHHHHHHHHHH
Confidence 467776654443 333333332222 1346677777777776663
No 18
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=34.98 E-value=3.1e+02 Score=27.88 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=35.9
Q ss_pred HHHHHHHHH-HhhhhhcchhhhcCCChhhHHHHHhhhh----hhhHHHHHHHH
Q 013551 204 YGRISTIHA-LSFLSDLKLGHYMKIPPRCMYTAQLVGT----IVSGVVNLGVA 251 (441)
Q Consensus 204 ~~~~~~~qa-~~~~~DlKlG~y~k~pPR~~f~aQiiGt----ivg~~v~~~v~ 251 (441)
..+....|. .++++-.=+|+-+++||=..+.+.++|. ++|.++++.+.
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~ 318 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLT 318 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444454444 6788888899999999999999999987 45555666555
No 19
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=34.28 E-value=77 Score=29.45 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=24.3
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 013551 294 RRLFGPGGMYRNLVWLFLVGAVLPVPVWVLS 324 (441)
Q Consensus 294 ~~lf~~g~~y~~~~~~fliG~~~pi~~~~l~ 324 (441)
||+|+.|+.+.-..-+.+.|++..++..++.
T Consensus 41 rRilGdgKTwrG~i~gvl~g~l~g~i~~~l~ 71 (175)
T PF01864_consen 41 RRILGDGKTWRGFIGGVLAGTLVGIIQGLLL 71 (175)
T ss_pred CEecCCCCeEEeeeHHHHHHHHHHHHHHHHh
Confidence 8999999888876667778888777766664
No 20
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=29.54 E-value=1.1e+02 Score=25.52 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhchHHHHH
Q 013551 65 LFALSIGSGFARFTSTLTHVALFHGSAILEQ 95 (441)
Q Consensus 65 ~~~~~~~~~fa~~~a~i~~~~l~~~k~i~~~ 95 (441)
-|++.-.+.||++.-++.-++|--++.||..
T Consensus 10 dyal~K~~~FA~L~i~~FiILLIi~~~IW~~ 40 (121)
T PF10669_consen 10 DYALTKIMFFAFLFIVVFIILLIITKSIWHD 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3677778889988877777777777777753
No 21
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=29.20 E-value=2.7e+02 Score=31.51 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=21.4
Q ss_pred hhcC-CCCchHHHHHHHHHHHHhheeEEEe
Q 013551 113 KSYK-QVPQWWFYVLLLGSIGLSLLMSFVW 141 (441)
Q Consensus 113 ~~y~-evP~wwy~~~~~~s~~l~i~~~~~~ 141 (441)
..|+ +.|.|-++..+++++++.+-...++
T Consensus 415 ~~~~t~lP~W~~~lal~l~~i~~iP~~~i~ 444 (681)
T TIGR00727 415 EHWPTETPVWGLFVCLIFNFVFLIPTTILQ 444 (681)
T ss_pred hhCCCCCCHHHHHHHHHHHHHHHHhhhheE
Confidence 4556 9999999988888888776554444
No 22
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=28.41 E-value=1.3e+02 Score=31.28 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 013551 311 LVGAVLPVPVWVLSKVFP 328 (441)
Q Consensus 311 liG~~~pi~~~~l~r~~P 328 (441)
.+|..+|+.+|+.+-.+|
T Consensus 318 y~g~al~l~i~~~~~~~~ 335 (385)
T COG5438 318 YLGGALPLLILFLRNNYS 335 (385)
T ss_pred HHHhhHHHHHHHHHcCCc
Confidence 378888999998876655
No 23
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=26.97 E-value=2.9e+02 Score=24.36 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Q 013551 305 NLVWLFLVGAVLPVPVWVLSKVFPE 329 (441)
Q Consensus 305 ~~~~~fliG~~~pi~~~~l~r~~P~ 329 (441)
.+|.+..+..++-.+-|+-||.|.|
T Consensus 53 LlPlFA~iALlanalgW~sHRQW~R 77 (139)
T PRK13755 53 LLPLFAAIALLANALGWFSHRQWLR 77 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555777777778888887764
No 24
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=26.84 E-value=6.3e+02 Score=24.99 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=17.7
Q ss_pred hhhhhhhHHHHHHHHHHHHhh
Q 013551 237 LVGTIVSGVVNLGVAWWMLES 257 (441)
Q Consensus 237 iiGtivg~~v~~~v~~~~l~~ 257 (441)
++|.+++.++.+...++++.-
T Consensus 222 ~~g~i~afi~g~~~I~~ll~~ 242 (268)
T PRK00281 222 AVGFVVAFVVALIAIKWLLKY 242 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999998888753
No 25
>PRK00816 rnfD electron transport complex protein RnfD; Reviewed
Probab=26.68 E-value=2.8e+02 Score=28.64 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=20.7
Q ss_pred ccchhHHHHHHHHHHHHHhhhceeEEEeeCCCc
Q 013551 145 VQLQWWGMLFAFALAWIVTLPIGVIQATTNQQP 177 (441)
Q Consensus 145 ~~lp~w~~ilal~l~~i~~~p~g~i~a~tg~~p 177 (441)
...|||..+++.+++.++ .=.+.|=.|.|+
T Consensus 90 p~~P~W~~~iG~~fAI~i---gK~~fGGlG~N~ 119 (350)
T PRK00816 90 PLAPWWMIVIGTVFAIII---AKQLYGGLGQNP 119 (350)
T ss_pred CCCcHHHHHHHHHHHHHH---HHHhhCCCCCCc
Confidence 559999999887776663 234566666654
No 26
>TIGR01946 rnfD electron transport complex, RnfABCDGE type, D subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=25.72 E-value=3.3e+02 Score=27.90 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=21.4
Q ss_pred cccchhHHHHHHHHHHHHHhhhceeEEEeeCCCc
Q 013551 144 EVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQP 177 (441)
Q Consensus 144 ~~~lp~w~~ilal~l~~i~~~p~g~i~a~tg~~p 177 (441)
+...|||..+++..++.++ .=.+.|-.|.|+
T Consensus 83 P~~~P~W~~~ig~~faI~i---gK~~fGGlG~N~ 113 (327)
T TIGR01946 83 PPLAPWWMIVIGTIFAIVL---GKHLYGGLGQNI 113 (327)
T ss_pred CCCCcHHHHHHHHHHHHHH---HHHhhcCCCCCC
Confidence 3559999999887776664 235566666654
Done!