Query 013551
Match_columns 441
No_of_seqs 168 out of 1095
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 55.3 53 0.0018 32.3 9.5 17 228-244 172-188 (340)
2 2v2f_A Penicillin binding prot 17.9 33 0.0011 20.2 0.4 13 24-36 4-16 (26)
3 2jwa_A Receptor tyrosine-prote 15.1 91 0.0031 21.3 2.1 19 358-376 23-41 (44)
4 2l2t_A Receptor tyrosine-prote 13.0 1.2E+02 0.004 20.7 2.3 17 360-376 24-40 (44)
5 2ks1_B Epidermal growth factor 12.4 1.3E+02 0.0043 20.5 2.3 16 361-376 26-41 (44)
6 2nq2_A Hypothetical ABC transp 12.0 9.3E+02 0.032 23.0 13.4 62 294-377 272-334 (337)
7 2l8s_A Integrin alpha-1; trans 12.0 1.7E+02 0.0057 20.9 2.8 17 146-162 6-22 (54)
8 2k1a_A Integrin alpha-IIB; sin 11.3 2E+02 0.0069 19.3 3.0 15 147-161 8-22 (42)
9 2knc_A Integrin alpha-IIB; tra 10.8 2E+02 0.0067 20.5 2.9 17 146-162 9-25 (54)
10 1iij_A ERBB-2 receptor protein 10.5 49 0.0017 21.5 -0.3 17 358-374 19-35 (35)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=55.30 E-value=53 Score=32.33 Aligned_cols=17 Identities=12% Similarity=-0.109 Sum_probs=11.9
Q ss_pred ChhhHHHHHhhhhhhhH
Q 013551 228 PPRCMYTAQLVGTIVSG 244 (441)
Q Consensus 228 pPR~~f~aQiiGtivg~ 244 (441)
++-..|..|+++|++=.
T Consensus 172 s~~~~f~~E~i~Tf~Lv 188 (340)
T 3iyz_A 172 TAGHGLLVELIITFQLV 188 (340)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45567888888887633
No 2
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=17.87 E-value=33 Score=20.23 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=9.7
Q ss_pred ccchhhhccCCcc
Q 013551 24 IFSNQLFTSSGHK 36 (441)
Q Consensus 24 ~~s~~~fd~~G~~ 36 (441)
-.|+.+||++|+.
T Consensus 4 ~~ss~IYD~~g~~ 16 (26)
T 2v2f_A 4 TTSSKIYDNKNQL 16 (26)
T ss_pred CCCCEEEeCCCCE
Confidence 3567888888874
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=15.09 E-value=91 Score=21.32 Aligned_cols=19 Identities=16% Similarity=0.474 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHhcCcc
Q 013551 358 SWLITGMIFNYFVFRYHKR 376 (441)
Q Consensus 358 ~~~~vG~~~~~~~rr~~~~ 376 (441)
..+++|+.+..|+|||+.+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 4567788888899998754
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=12.99 E-value=1.2e+02 Score=20.72 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcCcc
Q 013551 360 LITGMIFNYFVFRYHKR 376 (441)
Q Consensus 360 ~~vG~~~~~~~rr~~~~ 376 (441)
.++++...+|+|||+.+
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 35556667788888654
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.36 E-value=1.3e+02 Score=20.53 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhcCcc
Q 013551 361 ITGMIFNYFVFRYHKR 376 (441)
Q Consensus 361 ~vG~~~~~~~rr~~~~ 376 (441)
++++...+|+|||+.+
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 4455667788887654
No 6
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=12.04 E-value=9.3e+02 Score=23.00 Aligned_cols=62 Identities=26% Similarity=0.342 Sum_probs=33.7
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHHHHHHHHhhc-CCCccCCccchHHHHHhhccCCCCCCccchhHHHHHHHHHHHHHh
Q 013551 294 RRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKVF-PEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFR 372 (441)
Q Consensus 294 ~~lf~~g~~y~~~~~~fliG~~~pi~~~~l~r~~-P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr 372 (441)
++++++ ..-..++.+.++|+++-+.--.+.|.. | .+.| .+..+.++-+-+|-+.++|
T Consensus 272 r~l~g~-~~~~llp~s~l~Ga~~ll~ad~lar~~~p-------~elP--------------vG~~taliG~p~fl~ll~r 329 (337)
T 2nq2_A 272 RMLVGA-NHQSLLPCTMLVGATYMLLVDNVARSLSD-------AEIP--------------ISILTALIGAPLFGVLVYK 329 (337)
T ss_dssp HHHHCS-CHHHHHHHHHHHHHHHHHHHHHHHHHSCS-------SCCC--------------HHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCC-ChhhHHHHHHHHHHHHHHHHHHHHHHhcc-------cCCC--------------HHHHHHHHHHHHHHHHHHH
Confidence 455543 333457788899998877766666543 2 1112 2344555555666667777
Q ss_pred cCccc
Q 013551 373 YHKRW 377 (441)
Q Consensus 373 ~~~~w 377 (441)
++++|
T Consensus 330 ~~~~~ 334 (337)
T 2nq2_A 330 LKRGG 334 (337)
T ss_dssp C----
T ss_pred hcccc
Confidence 65554
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=11.97 E-value=1.7e+02 Score=20.91 Aligned_cols=17 Identities=12% Similarity=0.423 Sum_probs=8.9
Q ss_pred cchhHHHHHHHHHHHHH
Q 013551 146 QLQWWGMLFAFALAWIV 162 (441)
Q Consensus 146 ~lp~w~~ilal~l~~i~ 162 (441)
.+|+|-+++|++.+.++
T Consensus 6 ~vp~WiIi~svl~GLLL 22 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLL 22 (54)
T ss_dssp CCCTHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHH
Confidence 35555555555554443
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=11.32 E-value=2e+02 Score=19.32 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=7.4
Q ss_pred chhHHHHHHHHHHHH
Q 013551 147 LQWWGMLFAFALAWI 161 (441)
Q Consensus 147 lp~w~~ilal~l~~i 161 (441)
.|+|-++++++.+.+
T Consensus 8 vp~wiIi~s~l~GLl 22 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLL 22 (42)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 455555555444443
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.76 E-value=2e+02 Score=20.49 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=8.6
Q ss_pred cchhHHHHHHHHHHHHH
Q 013551 146 QLQWWGMLFAFALAWIV 162 (441)
Q Consensus 146 ~lp~w~~ilal~l~~i~ 162 (441)
.+|+|-++++++.++++
T Consensus 9 ~vp~wiIi~svl~GLll 25 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLL 25 (54)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH
Confidence 35555555555544443
No 10
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=10.47 E-value=49 Score=21.55 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHhcC
Q 013551 358 SWLITGMIFNYFVFRYH 374 (441)
Q Consensus 358 ~~~~vG~~~~~~~rr~~ 374 (441)
..+++|..+..|+|||+
T Consensus 19 l~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 19 LFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHhheEEeecC
Confidence 45667777778888875
Done!