BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013553
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 62.0 bits (149), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL-GC 73
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 2 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 59
Query: 74 VPLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 60 RPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 91
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 61.6 bits (148), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL-GC 73
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 74 VPLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL-GC 73
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 74 VPLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E ++ L + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 32 RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 91
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94
E CP C L V LRPD + +KI+P
Sbjct: 92 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP 121
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E ++ L + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 31 RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 90
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94
E CP C L V LRPD + +KI+P
Sbjct: 91 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP 120
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
C IC L DATTI+ECLHTFC+ CI CP CNI
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNR--CPKCNI 58
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E ++ L + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 12 RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 71
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF 93
E CP C L V LRPD + +KI+
Sbjct: 72 E-CPTCRKKL--VSKRSLRPDPNFDALISKIY 100
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCI---YDKISDEEIEC-CPVCNIDLGCV 74
E I +TCPIC LL++ + ++C H+FCR CI Y+ + + + CPVC +
Sbjct: 14 EMIKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY--- 69
Query: 75 PLEKLRPD 82
P L+P+
Sbjct: 70 PFGNLKPN 77
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI-------ECCPVCNIDLGCVPLE 77
+TCPIC LL + ++ +C H+ CR CI +S++E CPVC I E
Sbjct: 13 VTCPICLELLTEPLSL-DCGHSLCRACI--TVSNKEAVTSMGGKSSCPVCGISYS---FE 66
Query: 78 KLRPDHTLQDV 88
L+ + L ++
Sbjct: 67 HLQANQHLANI 77
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 35.4 bits (80), Expect = 0.061, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIEC----CPVC 67
V K++ E I CPIC +L+ TI +C H FC KCI E C CP+C
Sbjct: 13 FVNKLQEEVI-----CPICLDILQKPVTI-DCGHNFCLKCI---TQIGETSCGFFKCPLC 63
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 35.4 bits (80), Expect = 0.064, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68
CPIC LR+A + C H FC+ CI I D + CPV N
Sbjct: 21 CPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHK-CPVDN 60
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 35.4 bits (80), Expect = 0.064, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68
CPIC LR+A + C H FC+ CI I D + CPV N
Sbjct: 9 CPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHK-CPVDN 48
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 35.4 bits (80), Expect = 0.072, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68
CPIC LR+A + C H FC+ CI I D + CPV N
Sbjct: 28 CPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHK-CPVDN 67
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 22 AACMTCPIC----NTLLRDATTI--SECLHTFCRKCIYDKISDEEIECCPVC 67
A ++CPIC + ++++ I +EC H FC +C+ D + + CP C
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTC 50
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIEC----CPVC 67
V K++ E I CPIC +L+ TI +C H FC KCI E C CP+C
Sbjct: 13 FVNKLQEEVI-----CPICLDILQKPVTI-DCGHNFCLKCI---TQIGETSCGFFKCPLC 63
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
+ C IC+ +A T++ C H+FC CI ++ +IE CP+C D+
Sbjct: 65 LQCIICSEYFIEAVTLN-CAHSFCSYCI-NEWMKRKIE-CPICRKDI 108
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC 67
+ C C +LR+ + C H FC C+ D I CPVC
Sbjct: 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG----CPVC 61
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 22 AACMTCPIC----NTLLRDATTI--SECLHTFCRKCIYDKISDEEIECCPVC 67
+ ++CPIC + ++++ I +EC H FC +C+ D + + CP C
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTC 54
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 22 AACMTCPIC----NTLLRDATTI--SECLHTFCRKCIYDKISDEEIECCPVC 67
+ ++CPIC + ++++ I +EC H FC +C+ D + + CP C
Sbjct: 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTC 119
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPL 76
K E C+ C + R TT+ C H C+ C+ D+ ++ CP C DLG
Sbjct: 48 KVEETFQCICCQ--ELVFRPITTV--CQHNVCKDCL-DRSFRAQVFSCPACRYDLG--RS 100
Query: 77 EKLRPDHTLQDVRAKIFP 94
++ + LQ V ++FP
Sbjct: 101 YAMQVNQPLQTVLNQLFP 118
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
+ C IC+ +A T++ C H+FC CI ++ +IE CP+C D+
Sbjct: 54 LQCIICSEYFIEAVTLN-CAHSFCSYCI-NEWMKRKIE-CPICRKDI 97
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIEC-CPVC 67
E + +C +C L++ I EC H FC+ CI D E + CPVC
Sbjct: 10 ENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIY----DKISDEEIECCPVC 67
++V VK E +TCPIC LL ++ +C H+FC+ C+ + D+ CPVC
Sbjct: 12 ILVNVKEE-----VTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVC 65
Query: 68 NIDLGCVPLEKLRPDHTLQDV 88
I P E +RP+ + ++
Sbjct: 66 RISYQ--P-ENIRPNRHVANI 83
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
+ C IC+ +A T++ C H+FC CI ++ +IE CP+C D+
Sbjct: 54 LQCIICSEYFIEAVTLN-CAHSFCSYCI-NEWMKRKIE-CPICRKDI 97
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 22 AACMTCPIC----NTLLRDATTI--SECLHTFCRKCIYDKISDEEIECCPVC 67
+ ++CPIC + ++++ I +EC H FC +C+ D + + CP C
Sbjct: 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTC 57
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.3 bits (72), Expect = 0.57, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 37 ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
A I C H+FC+KCI DK SD CP+C + +
Sbjct: 26 ADLILPCAHSFCQKCI-DKWSDRH-RNCPICRLQM 58
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIEC 63
CPIC LR+A + C H FC+ CI I D +C
Sbjct: 21 CPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKC 56
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68
+ C IC ++ DA I C +++C +CI + + + CP C+
Sbjct: 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 57
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68
+ C IC ++ DA I C +++C +CI + + + CP C+
Sbjct: 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1
Length = 371
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIEC--CPVCNIDLGCVPLEKLRPD 82
+ CPI T ++ + C H C ++ S +I CPVC ID+ LE L
Sbjct: 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA---LENLAIS 306
Query: 83 HTLQDV 88
+ D+
Sbjct: 307 EFVDDI 312
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 27 CPIC--NTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
C +C + RD I C H F RKC+ + ++ CP+CN+
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKV--CPLCNM 60
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC 67
C IC +L + T+ C HT C+ C + + CCP C
Sbjct: 18 CGICMEILVEPVTLP-CNHTLCKPCFQSTVEKASL-CCPFC 56
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 25 MTCPIC----NTLLRDATTI--SECLHTFCRKCIYDKISDEEIECCPVC 67
++CPIC + ++++ I +EC H FC +C+ D + + CP C
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTC 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,730,058
Number of Sequences: 62578
Number of extensions: 369815
Number of successful extensions: 670
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 40
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (25.0 bits)