BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013553
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2
PE=1 SV=1
Length = 420
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 254/429 (59%), Positives = 313/429 (72%), Gaps = 17/429 (3%)
Query: 10 NNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
++V KVKRET+ ACMTCP+C+ LLRDATTISECLHTFCRKCIY+KI+++EIE CPVC+I
Sbjct: 3 GDMVAKVKRETVVACMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDI 62
Query: 70 DLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPR 129
DLG PLEKLRPDH LQD+RAK+FPLKR+K +APE V S++LP +RKERS+SSLVVS PR
Sbjct: 63 DLGGTPLEKLRPDHILQDLRAKLFPLKRKKERAPEVVSSISLPAKRKERSISSLVVSTPR 122
Query: 130 VSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNV 189
VSAQ T +R+ AA RK +RGS T + KKEE+ +D+ + ASSPETL K +QN
Sbjct: 123 VSAQAGTTGKRTKAATRK--DVRGSGSFTKRTVKKEEEFGDDHVESASSPETLKKFTQN- 179
Query: 190 KPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAK 249
+ SS A P+Q +S++ + E + K LWKPLNFLV+VA+ T+ + K
Sbjct: 180 --KRQSSYANPNQSLSNRRNKDVDEPWDSKLHLWKPLNFLVDVANGTK---------DPK 228
Query: 250 AEPTTITDNEAQVHKTKNKEDKCKSKSGNK-NNNPDPTTSETINPKRLRRIRRKTAAAFG 308
+E + N+ Q KTK K+ K K K + +NN DPTTSET KR RR RRK ++ FG
Sbjct: 229 SELGNASHNDVQGSKTKTKDHKRKCKLEEEISNNGDPTTSETATLKRTRRTRRKRSSTFG 288
Query: 309 DSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFI 368
DS I + AA K ERRNG +WFSLVAS +Q G LPQI ++YLRI+D NIPVSFI
Sbjct: 289 DSRIP--LLPGAASLKQERRNGHVWFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFI 346
Query: 369 QKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFV 428
QKYLM KLDL SE EVEI CMG+PVIPTLQL++LVDLWL+T S RV A IGSSAK+FV
Sbjct: 347 QKYLMRKLDLKSEDEVEITCMGEPVIPTLQLHSLVDLWLETTSKHQRVAASIGSSAKEFV 406
Query: 429 MVLTYARKV 437
MVL Y+RK+
Sbjct: 407 MVLVYSRKL 415
>sp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1
PE=1 SV=2
Length = 421
Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust.
Identities = 250/429 (58%), Positives = 312/429 (72%), Gaps = 16/429 (3%)
Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
+++KVK+ET+ AC++C IC+ +LRDATTISECLHTFCRKCIY+KI+++EIE CPVCNIDL
Sbjct: 1 MMIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDL 60
Query: 72 GCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVS 131
G PLEKLRPDH LQD+RAKIF LKRRKVKAP V +LP +RKERS+SSLVVS P VS
Sbjct: 61 GSTPLEKLRPDHNLQDLRAKIFALKRRKVKAPGIV---SLPGKRKERSISSLVVSTPMVS 117
Query: 132 AQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASSPETLNKLSQNVKP 191
AQ TRRR+ A RK LR +L+ ++ KKEE S ++ + SSP+TLNK +QN +
Sbjct: 118 AQAGTTRRRTKAPTRKE--LRNGSLA-ERTVKKEESSGDELLESTSSPDTLNKFTQNKR- 173
Query: 192 MQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSN-SLGSEAKA 250
QS S + S IS+KE + E + K D WKPLNFLVEVA+ T+ LKS+ S GS +K+
Sbjct: 174 -QSKKSCKES--ISNKENKDGDEPWDSKMD-WKPLNFLVEVANGTKPLKSSASQGSGSKS 229
Query: 251 EPTTITDNEAQ-VHKTKNKEDKCKSKSGNKNNNPDPTTSETINPKRLRRIRRK-TAAAFG 308
E ++ N+ Q + + + +K+NN DPTTSET+ PKR+R +RK +A G
Sbjct: 230 EHANVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRTTQRKRSATTLG 289
Query: 309 DSNISPQAVLDAAGAKYERRNGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFI 368
DS PQ D + AK ERRNGP+WFSLVAS DQ G LPQI +++LRI+D N VSFI
Sbjct: 290 DSRNLPQP--DESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFI 347
Query: 369 QKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFV 428
QKYLM KLDL SE+E+EIKCMG+ VIPTL LYNLVDLWLQ +S R A++GSSAKDF
Sbjct: 348 QKYLMRKLDLESENEIEIKCMGEAVIPTLTLYNLVDLWLQKSSNHQRFAALVGSSAKDFT 407
Query: 429 MVLTYARKV 437
MVL YARK+
Sbjct: 408 MVLVYARKL 416
>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis
thaliana GN=At3g23060 PE=2 SV=1
Length = 480
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 58/82 (70%)
Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
++ KV + + C+ CPIC +DATTISECLHTFCR CI +K +E + CPVCN++L
Sbjct: 1 MLTKVLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNL 60
Query: 72 GCVPLEKLRPDHTLQDVRAKIF 93
G PLEKLR D T QD++ KI+
Sbjct: 61 GVFPLEKLRSDCTWQDLKLKIY 82
>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis
GN=pcgf3 PE=2 SV=1
Length = 242
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
L K+K I A +TC +CN L DATT++ECLHTFCR C+ + EE CP C I +
Sbjct: 2 LTRKIKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 59
Query: 72 G-CVPLEKLRPDHTLQDVRAKIFP 94
PL+ + D T+QD+ K+ P
Sbjct: 60 HQSHPLQYIGHDRTMQDIVYKLVP 83
>sp|Q4QR06|PCGF1_XENLA Polycomb group RING finger protein 1 OS=Xenopus laevis GN=pcgf1
PE=2 SV=2
Length = 259
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 10 NNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
N VVKVK + + + C +C DATTI+ECLHTFC+ CI + + CP+CNI
Sbjct: 28 NEEVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKY--CPLCNI 85
Query: 70 DLG-CVPLEKLRPDHTLQDVRAKIFP 94
+ PL L+ D +QD+ K+ P
Sbjct: 86 KIHETQPLLNLKLDRVMQDIVYKLVP 111
>sp|Q28H21|PCGF1_XENTR Polycomb group RING finger protein 1 OS=Xenopus tropicalis GN=pcgf1
PE=2 SV=1
Length = 259
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 10 NNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69
N VVKVK + + + C +C DATTI+ECLHTFC+ CI + + CP+CNI
Sbjct: 28 NEEVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKY--CPLCNI 85
Query: 70 DLG-CVPLEKLRPDHTLQDVRAKIFP 94
+ PL L+ D +QD+ K+ P
Sbjct: 86 KIHETQPLLNLKLDRVMQDIVYKLVP 111
>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3
PE=2 SV=1
Length = 241
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
L K+K I A +TC +C+ L DATT++ECLHTFCR C+ + EE CP C I +
Sbjct: 2 LTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 59
Query: 72 G-CVPLEKLRPDHTLQDVRAKIFP 94
PL+ + D T+QD+ K+ P
Sbjct: 60 HQSHPLQYIGHDRTMQDIVYKLVP 83
>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3
PE=1 SV=1
Length = 242
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
L K+K I A +TC +C+ L DATT++ECLHTFCR C+ + EE CP C I +
Sbjct: 2 LTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 59
Query: 72 G-CVPLEKLRPDHTLQDVRAKIFP 94
PL+ + D T+QD+ K+ P
Sbjct: 60 HQSHPLQYIGHDRTMQDIVYKLVP 83
>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2
SV=1
Length = 242
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 12 LVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71
L K+K I A +TC +C+ L DATT++ECLHTFCR C+ + EE CP C I +
Sbjct: 2 LTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVI 59
Query: 72 G-CVPLEKLRPDHTLQDVRAKIFP 94
PL+ + D T+QD+ K+ P
Sbjct: 60 HQSHPLQYIGHDRTMQDIVYKLVP 83
>sp|Q7ZYZ7|PCGF1_DANRE Polycomb group RING finger protein 1 OS=Danio rerio GN=pcgf1 PE=3
SV=1
Length = 261
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG- 72
VK+K + + + C +C DATTI+ECLHTFC+ CI + + CP+CNI +
Sbjct: 32 VKIKIKDLNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKY--CPMCNIKIHE 89
Query: 73 CVPLEKLRPDHTLQDVRAKIFP 94
PL L+ D +QD+ K+ P
Sbjct: 90 TQPLLNLKLDRVMQDIVYKLVP 111
>sp|Q8R023|PCGF1_MOUSE Polycomb group RING finger protein 1 OS=Mus musculus GN=Pcgf1 PE=2
SV=2
Length = 259
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG- 72
V+VK + + + C +C DATTI+ECLHTFC+ CI + + CP+CNI +
Sbjct: 34 VRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKY--CPMCNIKIHE 91
Query: 73 CVPLEKLRPDHTLQDVRAKIFP 94
PL L+ D +QD+ K+ P
Sbjct: 92 TQPLLNLKLDRVMQDIVYKLVP 113
>sp|Q9BSM1|PCGF1_HUMAN Polycomb group RING finger protein 1 OS=Homo sapiens GN=PCGF1 PE=1
SV=2
Length = 259
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG- 72
V+VK + + + C +C DATTI+ECLHTFC+ CI + + CP+CNI +
Sbjct: 34 VRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKY--CPMCNIKIHE 91
Query: 73 CVPLEKLRPDHTLQDVRAKIFP 94
PL L+ D +QD+ K+ P
Sbjct: 92 TQPLLNLKLDRVMQDIVYKLVP 113
>sp|Q6DLV9|PCGF1_RAT Polycomb group RING finger protein 1 (Fragment) OS=Rattus
norvegicus GN=Pcgf1 PE=2 SV=1
Length = 243
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG- 72
V+VK + + + C +C DATTI+ECLHTFC+ CI + + CP+CNI +
Sbjct: 22 VRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKY--CPMCNIKIHE 79
Query: 73 CVPLEKLRPDHTLQDVRAKIFP 94
PL L+ D +QD+ K+ P
Sbjct: 80 TQPLLNLKLDRVMQDIVYKLVP 101
>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1
Length = 326
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 13 VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 4 TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVH 61
Query: 73 CV-PLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 62 KTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abelii GN=BMI1 PE=2 SV=1
Length = 326
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 13 VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 4 TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVH 61
Query: 73 CV-PLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 62 KTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|P35226|BMI1_HUMAN Polycomb complex protein BMI-1 OS=Homo sapiens GN=BMI1 PE=1 SV=2
Length = 326
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 13 VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 4 TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVH 61
Query: 73 CV-PLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 62 KTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|Q32KX7|BMI1_BOVIN Polycomb complex protein BMI-1 OS=Bos taurus GN=BMI1 PE=2 SV=1
Length = 326
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 13 VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 4 TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVH 61
Query: 73 CV-PLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 62 KTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|P25916|BMI1_MOUSE Polycomb complex protein BMI-1 OS=Mus musculus GN=Bmi1 PE=1 SV=1
Length = 324
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 13 VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 4 TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVH 61
Query: 73 CV-PLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 62 KTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|Q9TST0|BMI1_FELCA Polycomb complex protein BMI-1 OS=Felis catus GN=BMI1 PE=2 SV=1
Length = 326
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 13 VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 4 TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVH 61
Query: 73 CV-PLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 62 KTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRR 95
>sp|P35227|PCGF2_HUMAN Polycomb group RING finger protein 2 OS=Homo sapiens GN=PCGF2
PE=1 SV=1
Length = 344
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 13 VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 4 TTRIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYL--ETNKYCPMCDVQVH 61
Query: 73 CV-PLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 62 KTRPLLSIRSDKTLQDIVYKLVPGLFKDEMKRRR 95
>sp|Q7T3E6|BMI1B_DANRE Polycomb complex protein BMI-1-B OS=Danio rerio GN=bmi1b PE=2
SV=1
Length = 324
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG-CVPLEKLRPDH 83
+ C +C DATTI ECLH+FC+ CI + E + CP+C++ + PL +R D
Sbjct: 16 LMCVLCGGYFIDATTIVECLHSFCKMCIVRYL--ETSKYCPICDVQVHKTKPLLNIRSDK 73
Query: 84 TLQDVRAKIFP------LKRRK 99
TLQD+ K+ P +KRR+
Sbjct: 74 TLQDIVYKLVPGLFKNEMKRRR 95
>sp|Q8JIR0|BMI1A_DANRE Polycomb complex protein BMI-1-A OS=Danio rerio GN=bmi1a PE=1 SV=2
Length = 320
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDH 83
+ C +C DATTI ECLH+FC+ CI + E + CP+C++ + PL +R D
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKMCIVRYL--ETSKYCPICDVQVHKTKPLLNIRSDK 73
Query: 84 TLQDVRAKIFP------LKRRKVKAPEAVPSV 109
TLQD+ K+ P +KRR+ E PSV
Sbjct: 74 TLQDIVYKLVPGLFKNEMKRRRDFYAEH-PSV 104
>sp|Q91648|BMI1A_XENLA Polycomb complex protein BMI-1-A OS=Xenopus laevis GN=bmi1a PE=1
SV=1
Length = 326
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDH 83
+ C +C DATTI ECLH+FC+ CI + E + CP+C++ + PL +R D
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKTRPLLNIRADK 73
Query: 84 TLQDVRAKIFP------LKRRK 99
TLQD+ K+ P +KRR+
Sbjct: 74 TLQDIVYKLVPGLFKGEMKRRR 95
>sp|P23798|PCGF2_MOUSE Polycomb group RING finger protein 2 OS=Mus musculus GN=Pcgf2
PE=1 SV=2
Length = 342
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 13 VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72
++K + + C +C DATTI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 4 TTRIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYL--ETNKYCPMCDVQVH 61
Query: 73 CV-PLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 62 KTRPLLSIRSDKTLQDIVYKLVPGLFKDEMKRRR 95
>sp|Q2YDF9|PCGF1_BOVIN Polycomb group RING finger protein 1 OS=Bos taurus GN=PCGF1 PE=2
SV=2
Length = 259
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG- 72
V+VK + + + C +C DATTI+ECLHTFC+ CI + + CP+CNI +
Sbjct: 34 VRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKY--CPMCNIKIHE 91
Query: 73 CVPLEKLRPDHTLQDVRAKIFP 94
PL + D +QD+ K+ P
Sbjct: 92 TQPLLNHKLDRVMQDIVYKLVP 113
>sp|Q640D5|BMI1B_XENLA Polycomb complex protein BMI-1-B OS=Xenopus laevis GN=bmi1b PE=2
SV=1
Length = 323
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV 74
++K + + C +C DA TI ECLH+FC+ CI + E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDAATIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 75 -PLEKLRPDHTLQDVRAKIFP------LKRRK 99
PL +R D TLQD+ K+ P +KRR+
Sbjct: 64 RPLLNIRADKTLQDIVYKLVPGLFKGEMKRRR 95
>sp|Q1JPS1|PCF5B_DANRE Polycomb group RING finger protein 5-B OS=Danio rerio GN=pcgf5b
PE=2 SV=1
Length = 232
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDH 83
+TC +C L TT++ECLHTFC+ CI D CP C I + PLE LR D+
Sbjct: 16 ITCFVCKGYLIKPTTVTECLHTFCKSCIVQHFEDSND--CPKCGIQVHETNPLEMLRLDN 73
Query: 84 TLQDVRAKIFPLKRRKVKAPE 104
TL++V K+ P R K + E
Sbjct: 74 TLEEVIFKLVPGLREKEQQQE 94
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E ++ L + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 26 RTPQEAITDGLEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 85
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
E CP C L V LRPD + +KI+P R + +A + + +++LS
Sbjct: 86 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP-SRDEYEAHQERVLARISKHNNQQALS 141
Query: 122 SLVVSAPRVSAQTTMTRRRSNAAARKAAA 150
+ ++ A + R + + + A
Sbjct: 142 HSIEEGLKIQAMNRLQRGKKHQIENGSGA 170
>sp|B3DK16|PCF5A_DANRE Polycomb group RING finger protein 5-A OS=Danio rerio GN=pcgf5a
PE=2 SV=1
Length = 234
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDH 83
+TC IC L T ++ECLHTFC+ CI EE CP C I + PLE LR D
Sbjct: 16 ITCSICRGYLIKPTAVTECLHTFCKSCIVQHF--EESNECPECGIQVHETNPLEMLRLDK 73
Query: 84 TLQDVRAKIFPLKRRKVKAPEA 105
TL+++ K+ P R K + E+
Sbjct: 74 TLEEIIFKLVPGLREKEEHQES 95
>sp|Q9BYE7|PCGF6_HUMAN Polycomb group RING finger protein 6 OS=Homo sapiens GN=PCGF6 PE=1
SV=2
Length = 350
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDH 83
+ C IC L DATTI+ECLHTFC+ CI CP CNI + PL +R D
Sbjct: 132 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNR--CPKCNIVVHQTQPLYNIRLDR 189
Query: 84 TLQDVRAKI 92
LQD+ K+
Sbjct: 190 QLQDIVYKL 198
>sp|Q99NA9|PCGF6_MOUSE Polycomb group RING finger protein 6 OS=Mus musculus GN=Pcgf6 PE=1
SV=1
Length = 353
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDH 83
+ C IC L DATTI+ECLHTFC+ CI CP CNI + PL +R D
Sbjct: 135 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNR--CPKCNIVVHQTQPLYNIRLDR 192
Query: 84 TLQDVRAKI 92
LQD+ K+
Sbjct: 193 QLQDIVYKL 201
>sp|Q5XI70|PCGF6_RAT Polycomb group RING finger protein 6 OS=Rattus norvegicus GN=Pcgf6
PE=2 SV=1
Length = 351
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDH 83
+ C IC L DATTI+ECLHTFC+ CI CP CNI + PL +R D
Sbjct: 133 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNR--CPKCNIVVHQTQPLYNIRLDR 190
Query: 84 TLQDVRAKI 92
LQD+ K+
Sbjct: 191 QLQDIVYKL 199
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E ++ L + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 26 RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 85
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
E CP C L V LRPD + +KI+P R + +A + + +++LS
Sbjct: 86 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP-SRDEYEAHQERVLARINKHNNQQALS 141
Query: 122 SLVVSAPRVSAQTTMTRRR 140
+ ++ A + R +
Sbjct: 142 HSIEEGLKIQAMNRLQRGK 160
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E ++ L + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 26 RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 85
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
E CP C L V LRPD + +KI+P R + +A + + +++LS
Sbjct: 86 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP-SRDEYEAHQERVLARINKHNNQQALS 141
Query: 122 SLVVSAPRVSAQTTMTRRR 140
+ ++ A + R +
Sbjct: 142 HSIEEGLKIQAMNRLQRGK 160
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1
Length = 336
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E ++ L + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 26 RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 85
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
E CP C L V LRPD + +KI+P R + +A + + +++LS
Sbjct: 86 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP-SRDEYEAHQERVLARINKHNNQQALS 141
Query: 122 SLVVSAPRVSAQTTMTRRR 140
+ ++ A + R +
Sbjct: 142 HSIEEGLKIQAMNRLQRGK 160
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 4/177 (2%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E + + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 23 RTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNK 82
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
E CP C L V LRPD + +KI+P R + +A + L +++LS
Sbjct: 83 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP-SRDEYEAHQDRVLAKLNRLHNQQALS 138
Query: 122 SLVVSAPRVSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASS 178
S + ++ A R R + G + D SV N++ S
Sbjct: 139 SSIEEGLKMQAMHRAQRVRKHQHESDNTTFSGGEDNCDSRSHVSNPSVHSNQEAGPS 195
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2
SV=1
Length = 308
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E ++ L + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 26 RTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK 85
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
E CP C L V LRPD + +KI+P R + +A + + +++LS
Sbjct: 86 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP-SRDEYEAHQERVLARINKHNNQQALS 141
Query: 122 SLVVSAPRVSAQTTMTRRR 140
+ ++ A + R +
Sbjct: 142 HSIEEGLKIQAMNRLQRGK 160
>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b
PE=2 SV=2
Length = 343
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 4/165 (2%)
Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC 73
+ V ++ + + CPIC +L++ T ECLH FC CI + E CP C L
Sbjct: 34 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 90
Query: 74 VPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSAQ 133
V LRPD + +KI+P R + +A + L +++LSS + ++ A
Sbjct: 91 VSKRSLRPDPNFDALISKIYP-SRDEYEAHQDRVLAKLSRLHNQQALSSSIEEGLKMQAM 149
Query: 134 TTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDNEDGASS 178
R R + G + D SV N++ S
Sbjct: 150 HRAQRVRKHQHESDNTTFSGGEDNCDSRSHVSNPSVHSNQEAGPS 194
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E + + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 23 RTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNK 82
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
E CP C L V LRPD + +KI+P R + +A + + L +++LS
Sbjct: 83 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALS 138
Query: 122 SLVVSAPRVSAQTTMTRRR 140
S + R+ A R R
Sbjct: 139 SSIEEGLRMQAMHRAQRVR 157
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E + + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 23 RTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNK 82
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
E CP C L V LRPD + +KI+P R + +A + + L +++LS
Sbjct: 83 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALS 138
Query: 122 SLVVSAPRVSAQTTMTRRR 140
S + R+ A R R
Sbjct: 139 SSIEEGLRMQAMHRAQRVR 157
>sp|A0JN86|PCGF5_BOVIN Polycomb group RING finger protein 5 OS=Bos taurus GN=PCGF5 PE=2
SV=1
Length = 255
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG-CVPLEKLRPDH 83
+TC IC L TT++ECLHTFC+ CI D CP C + PLE LR D+
Sbjct: 16 ITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSND--CPRCGNQVHETNPLEMLRLDN 73
Query: 84 TLQDVRAKIFPLKRRKVK 101
TL+++ K+ P R +++
Sbjct: 74 TLEEIIFKLVPGLREQLE 91
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E + + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 23 RTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNK 82
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
E CP C L V LRPD + +KI+P R + +A + + L +++LS
Sbjct: 83 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALS 138
Query: 122 SLVVSAPRVSAQTTMTRRR 140
S + R+ A R R
Sbjct: 139 SSIEEGLRMQAMHRAQRVR 157
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1 PE=3
SV=2
Length = 406
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 2 RVEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEI 61
R +E + + V ++ + + CPIC +L++ T ECLH FC CI +
Sbjct: 23 RTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNK 82
Query: 62 ECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLS 121
E CP C L V LRPD + +KI+P R + +A + + L +++LS
Sbjct: 83 E-CPTCRKKL--VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALS 138
Query: 122 SLVVSAPRVSAQTTMTRRR 140
S + R+ A R R
Sbjct: 139 SSIEEGLRMQAMHRAQRVR 157
>sp|Q86SE9|PCGF5_HUMAN Polycomb group RING finger protein 5 OS=Homo sapiens GN=PCGF5
PE=1 SV=1
Length = 256
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG-CVPLEKLRPDH 83
+TC IC L TT++ECLHTFC+ CI D CP C + PLE LR D+
Sbjct: 16 ITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSND--CPRCGNQVHETNPLEMLRLDN 73
Query: 84 TLQDVRAKIFPLKRRK 99
TL+++ K+ P R +
Sbjct: 74 TLEEIIFKLVPGLREQ 89
>sp|Q3UK78|PCGF5_MOUSE Polycomb group RING finger protein 5 OS=Mus musculus GN=Pcgf5
PE=2 SV=1
Length = 256
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG-CVPLEKLRPDH 83
+TC IC L TT++ECLHTFC+ CI D CP C + PLE LR D+
Sbjct: 16 ITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSND--CPRCGNQVHETNPLEMLRLDN 73
Query: 84 TLQDVRAKIFPLKRRK 99
TL+++ K+ P R +
Sbjct: 74 TLEEIIFKLVPGLREQ 89
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1 PE=3
SV=1
Length = 377
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC 73
+ V ++ + + CPIC +L++ T ECLH FC CI + E CP C L
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 62
Query: 74 VPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSAQ 133
V LRPD + +KI+P R + +A + + L +++LSS + R+ A
Sbjct: 63 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAM 121
Query: 134 TTMTRRR 140
R R
Sbjct: 122 HRAQRVR 128
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC 73
+ V ++ + + CPIC +L++ T ECLH FC CI + E CP C L
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 62
Query: 74 VPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSAQ 133
V LRPD + +KI+P R + +A + + L +++LSS + R+ A
Sbjct: 63 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAM 121
Query: 134 TTMTRRR 140
R R
Sbjct: 122 HRAQRVR 128
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC 73
+ V ++ + + CPIC +L++ T ECLH FC CI + E CP C L
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 62
Query: 74 VPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSAQ 133
V LRPD + +KI+P R + +A + + L +++LSS + R+ A
Sbjct: 63 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAM 121
Query: 134 TTMTRRR 140
R R
Sbjct: 122 HRAQRVR 128
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC 73
+ V ++ + + CPIC +L++ T ECLH FC CI + E CP C L
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 62
Query: 74 VPLEKLRPDHTLQDVRAKIFPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSAQ 133
V LRPD + +KI+P R + +A + + L +++LSS + R+ A
Sbjct: 63 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAM 121
Query: 134 TTMTRRR 140
R R
Sbjct: 122 HRAQRVR 128
>sp|P35820|PSC_DROME Polycomb group protein Psc OS=Drosophila melanogaster GN=Psc PE=1
SV=2
Length = 1601
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHT 84
+ C +C L +ATTI ECLH+FC C+ + + E CP C + + ++ D T
Sbjct: 261 IICHLCQGYLINATTIVECLHSFCHSCLINHLRKERF--CPRCEMVINNA-KPNIKSDTT 317
Query: 85 LQDVRAKIFP 94
LQ + K+ P
Sbjct: 318 LQAIVYKLVP 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,228,690
Number of Sequences: 539616
Number of extensions: 6379040
Number of successful extensions: 24042
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 796
Number of HSP's that attempted gapping in prelim test: 22577
Number of HSP's gapped (non-prelim): 1972
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)