Query 013553
Match_columns 441
No_of_seqs 258 out of 1307
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2660 Locus-specific chromos 99.9 8.7E-24 1.9E-28 210.4 3.7 320 14-439 5-328 (331)
2 PF15227 zf-C3HC4_4: zinc fing 99.2 1.6E-11 3.5E-16 89.3 3.4 40 27-67 1-42 (42)
3 KOG0311 Predicted E3 ubiquitin 99.1 7.3E-12 1.6E-16 126.5 0.2 96 3-101 22-117 (381)
4 smart00504 Ubox Modified RING 99.1 1E-10 2.2E-15 90.2 4.9 62 24-91 1-62 (63)
5 TIGR00599 rad18 DNA repair pro 99.0 1.7E-10 3.7E-15 119.9 5.5 75 17-97 19-93 (397)
6 PF14835 zf-RING_6: zf-RING of 99.0 1E-10 2.2E-15 92.3 1.3 63 20-89 3-65 (65)
7 PF04564 U-box: U-box domain; 98.9 8.2E-10 1.8E-14 89.1 4.3 68 23-95 3-70 (73)
8 PLN03208 E3 ubiquitin-protein 98.9 7.4E-10 1.6E-14 104.8 3.9 54 17-71 11-78 (193)
9 KOG0287 Postreplication repair 98.9 5.9E-10 1.3E-14 112.3 2.5 75 17-97 16-90 (442)
10 KOG2177 Predicted E3 ubiquitin 98.8 3.3E-09 7.1E-14 99.8 4.2 72 17-96 6-77 (386)
11 PF13923 zf-C3HC4_2: Zinc fing 98.7 5.6E-09 1.2E-13 74.2 2.7 39 27-67 1-39 (39)
12 PF00097 zf-C3HC4: Zinc finger 98.7 7E-09 1.5E-13 73.9 2.8 41 27-67 1-41 (41)
13 COG5432 RAD18 RING-finger-cont 98.6 1.7E-08 3.6E-13 100.3 3.5 74 18-97 19-92 (391)
14 KOG0823 Predicted E3 ubiquitin 98.5 3.9E-08 8.5E-13 95.0 2.3 49 22-71 45-94 (230)
15 cd00162 RING RING-finger (Real 98.5 9E-08 2E-12 67.3 3.4 44 26-70 1-44 (45)
16 KOG0317 Predicted E3 ubiquitin 98.5 8.4E-08 1.8E-12 95.3 3.2 48 21-71 236-283 (293)
17 PHA02929 N1R/p28-like protein; 98.5 1.1E-07 2.5E-12 93.0 4.0 48 22-71 172-226 (238)
18 PF13445 zf-RING_UBOX: RING-ty 98.4 7.8E-08 1.7E-12 70.6 1.9 37 27-65 1-43 (43)
19 PF13920 zf-C3HC4_3: Zinc fing 98.4 1.5E-07 3.3E-12 70.2 3.1 45 24-71 2-47 (50)
20 PF13639 zf-RING_2: Ring finge 98.4 8.9E-08 1.9E-12 69.6 1.5 40 26-68 2-44 (44)
21 KOG0320 Predicted E3 ubiquitin 98.4 1.4E-07 3.1E-12 88.0 2.8 48 21-71 128-177 (187)
22 smart00184 RING Ring finger. E 98.3 6E-07 1.3E-11 60.9 3.1 39 27-67 1-39 (39)
23 PHA02926 zinc finger-like prot 98.2 7.3E-07 1.6E-11 86.1 3.4 50 22-71 168-229 (242)
24 PF14634 zf-RING_5: zinc-RING 98.2 1.2E-06 2.5E-11 64.0 3.3 42 26-69 1-44 (44)
25 KOG2164 Predicted E3 ubiquitin 98.2 8.8E-07 1.9E-11 93.8 2.5 48 24-72 186-236 (513)
26 TIGR00570 cdk7 CDK-activating 98.0 5.7E-06 1.2E-10 83.7 4.4 48 24-72 3-54 (309)
27 COG5574 PEX10 RING-finger-cont 98.0 2.8E-06 6.1E-11 83.7 2.1 48 23-71 214-261 (271)
28 KOG0978 E3 ubiquitin ligase in 98.0 2.2E-06 4.8E-11 94.4 1.3 56 16-73 635-690 (698)
29 COG5222 Uncharacterized conser 97.9 7.2E-06 1.6E-10 82.1 4.0 70 25-97 275-344 (427)
30 PF11789 zf-Nse: Zinc-finger o 97.9 6E-06 1.3E-10 64.1 2.5 45 22-66 9-53 (57)
31 KOG4159 Predicted E3 ubiquitin 97.9 6.7E-06 1.4E-10 86.0 2.5 74 19-95 79-154 (398)
32 PF12678 zf-rbx1: RING-H2 zinc 97.8 1.6E-05 3.4E-10 64.4 3.1 41 26-68 21-73 (73)
33 KOG2879 Predicted E3 ubiquitin 97.6 3.4E-05 7.3E-10 76.6 3.0 50 22-71 237-286 (298)
34 COG5152 Uncharacterized conser 97.6 3.2E-05 7E-10 73.7 2.3 69 13-90 187-255 (259)
35 PF11816 DUF3337: Domain of un 97.4 0.00015 3.3E-09 74.2 5.3 93 328-437 211-330 (331)
36 KOG0297 TNF receptor-associate 97.3 0.00014 2.9E-09 76.3 3.4 69 20-92 17-85 (391)
37 KOG0802 E3 ubiquitin ligase [P 97.3 9.6E-05 2.1E-09 80.2 1.9 48 21-71 288-340 (543)
38 KOG0824 Predicted E3 ubiquitin 97.1 0.00021 4.5E-09 72.0 1.7 45 25-71 8-52 (324)
39 KOG4628 Predicted E3 ubiquitin 97.0 0.0004 8.6E-09 71.6 3.2 46 25-71 230-277 (348)
40 KOG1813 Predicted E3 ubiquitin 97.0 0.00038 8.2E-09 69.9 2.2 45 24-71 241-285 (313)
41 PF12861 zf-Apc11: Anaphase-pr 96.9 0.00085 1.8E-08 56.3 3.5 48 24-71 21-81 (85)
42 KOG1002 Nucleotide excision re 96.5 0.0011 2.3E-08 71.1 1.7 50 22-72 534-586 (791)
43 COG5243 HRD1 HRD ubiquitin lig 96.5 0.0022 4.7E-08 66.4 3.6 47 22-71 285-344 (491)
44 KOG1039 Predicted E3 ubiquitin 96.3 0.0019 4.2E-08 66.7 2.1 50 22-71 159-220 (344)
45 COG5540 RING-finger-containing 96.3 0.0024 5.3E-08 64.5 2.4 47 24-71 323-371 (374)
46 KOG4367 Predicted Zn-finger pr 95.9 0.0046 9.9E-08 65.1 2.5 36 22-58 2-37 (699)
47 KOG1785 Tyrosine kinase negati 95.6 0.0055 1.2E-07 64.0 1.6 47 24-71 369-415 (563)
48 KOG0804 Cytoplasmic Zn-finger 95.3 0.0072 1.6E-07 63.9 1.2 47 20-71 171-221 (493)
49 KOG1645 RING-finger-containing 95.1 0.0095 2E-07 62.4 1.6 61 23-86 3-67 (463)
50 KOG4172 Predicted E3 ubiquitin 95.1 0.0065 1.4E-07 47.1 0.3 45 25-71 8-53 (62)
51 KOG0825 PHD Zn-finger protein 95.1 0.0058 1.3E-07 68.2 0.0 47 24-72 123-171 (1134)
52 KOG2660 Locus-specific chromos 94.9 0.022 4.8E-07 58.2 3.6 58 346-404 158-216 (331)
53 KOG0827 Predicted E3 ubiquitin 94.8 0.017 3.7E-07 60.2 2.3 46 25-72 5-56 (465)
54 COG5219 Uncharacterized conser 94.7 0.013 2.7E-07 66.8 1.4 52 20-71 1465-1522(1525)
55 KOG1001 Helicase-like transcri 94.6 0.017 3.6E-07 64.7 1.8 45 25-71 455-499 (674)
56 KOG4185 Predicted E3 ubiquitin 94.4 0.036 7.7E-07 55.4 3.5 67 24-92 3-77 (296)
57 KOG3161 Predicted E3 ubiquitin 94.2 0.023 4.9E-07 62.5 1.8 44 20-69 7-54 (861)
58 PF04641 Rtf2: Rtf2 RING-finge 93.9 0.049 1.1E-06 54.0 3.3 49 21-72 110-161 (260)
59 KOG4265 Predicted E3 ubiquitin 93.7 0.035 7.6E-07 57.3 2.0 47 22-71 288-335 (349)
60 KOG1734 Predicted RING-contain 93.7 0.024 5.2E-07 56.7 0.8 48 23-71 223-280 (328)
61 PF11793 FANCL_C: FANCL C-term 93.6 0.017 3.7E-07 46.5 -0.4 48 24-71 2-65 (70)
62 KOG1571 Predicted E3 ubiquitin 93.5 0.032 7E-07 57.6 1.4 45 21-71 302-346 (355)
63 KOG3800 Predicted E3 ubiquitin 93.5 0.062 1.3E-06 54.3 3.3 45 26-71 2-50 (300)
64 KOG4739 Uncharacterized protei 93.5 0.035 7.5E-07 54.6 1.5 64 25-97 4-68 (233)
65 KOG3039 Uncharacterized conser 93.4 0.058 1.3E-06 53.5 2.9 47 23-71 220-269 (303)
66 KOG0826 Predicted E3 ubiquitin 93.4 0.036 7.7E-07 56.8 1.4 46 23-70 299-344 (357)
67 KOG4275 Predicted E3 ubiquitin 93.3 0.029 6.3E-07 56.7 0.6 40 24-70 300-340 (350)
68 KOG0828 Predicted E3 ubiquitin 93.0 0.048 1E-06 58.5 1.7 48 22-71 569-633 (636)
69 smart00744 RINGv The RING-vari 92.9 0.1 2.2E-06 39.3 2.9 42 26-68 1-49 (49)
70 KOG4692 Predicted E3 ubiquitin 92.6 0.067 1.5E-06 55.4 2.1 46 22-70 420-465 (489)
71 KOG1814 Predicted E3 ubiquitin 92.3 0.11 2.5E-06 54.6 3.4 49 21-69 181-237 (445)
72 KOG4362 Transcriptional regula 91.7 0.072 1.6E-06 59.4 1.2 67 22-92 19-86 (684)
73 KOG3039 Uncharacterized conser 90.6 0.16 3.5E-06 50.4 2.3 44 14-58 33-76 (303)
74 PF13765 PRY: SPRY-associated 90.6 0.065 1.4E-06 40.0 -0.3 37 109-148 1-37 (49)
75 PF02891 zf-MIZ: MIZ/SP-RING z 90.4 0.14 3E-06 38.7 1.2 46 24-69 2-49 (50)
76 PF14570 zf-RING_4: RING/Ubox 90.3 0.3 6.5E-06 36.9 3.0 43 27-70 1-46 (48)
77 KOG3002 Zn finger protein [Gen 90.1 0.26 5.6E-06 50.3 3.4 62 21-93 45-106 (299)
78 PF14447 Prok-RING_4: Prokaryo 89.7 0.15 3.3E-06 39.5 1.0 45 22-71 5-49 (55)
79 COG5236 Uncharacterized conser 89.6 0.21 4.6E-06 51.7 2.3 51 19-70 56-106 (493)
80 PF05290 Baculo_IE-1: Baculovi 88.3 0.42 9.2E-06 43.4 3.0 58 13-72 71-132 (140)
81 PHA03096 p28-like protein; Pro 88.1 0.27 5.9E-06 49.8 1.9 45 25-69 179-231 (284)
82 KOG1941 Acetylcholine receptor 87.9 0.21 4.6E-06 52.4 0.9 48 22-69 363-413 (518)
83 COG5194 APC11 Component of SCF 87.8 0.47 1E-05 39.6 2.7 44 26-71 33-80 (88)
84 KOG1493 Anaphase-promoting com 86.4 0.18 3.9E-06 41.7 -0.4 36 36-71 44-80 (84)
85 KOG2817 Predicted E3 ubiquitin 85.4 0.61 1.3E-05 49.1 2.7 48 21-70 331-383 (394)
86 KOG3579 Predicted E3 ubiquitin 85.1 0.65 1.4E-05 47.1 2.7 70 23-96 267-343 (352)
87 COG5175 MOT2 Transcriptional r 84.8 0.54 1.2E-05 48.7 2.0 47 23-71 14-63 (480)
88 KOG2114 Vacuolar assembly/sort 83.4 0.61 1.3E-05 53.2 1.8 45 21-70 837-881 (933)
89 PF10367 Vps39_2: Vacuolar sor 83.1 0.42 9.1E-06 40.0 0.3 33 21-53 75-108 (109)
90 KOG2932 E3 ubiquitin ligase in 82.9 0.54 1.2E-05 48.2 1.1 42 24-70 90-132 (389)
91 COG5220 TFB3 Cdk activating ki 82.7 0.3 6.5E-06 48.4 -0.8 47 24-71 10-63 (314)
92 KOG4445 Uncharacterized conser 80.3 0.48 1E-05 48.3 -0.3 51 22-72 113-186 (368)
93 PF07800 DUF1644: Protein of u 79.9 1.6 3.5E-05 40.8 3.0 19 23-41 1-19 (162)
94 KOG0298 DEAD box-containing he 79.7 0.52 1.1E-05 55.8 -0.4 52 19-72 1148-1199(1394)
95 KOG3970 Predicted E3 ubiquitin 77.3 3.5 7.5E-05 40.8 4.5 46 25-71 51-104 (299)
96 KOG2930 SCF ubiquitin ligase, 77.0 1.6 3.6E-05 38.1 2.0 27 42-70 80-106 (114)
97 KOG1815 Predicted E3 ubiquitin 75.3 4.4 9.5E-05 43.3 5.1 37 22-58 68-104 (444)
98 PF08746 zf-RING-like: RING-li 75.2 3.5 7.5E-05 30.2 3.0 41 27-67 1-43 (43)
99 cd01612 APG12_C Ubiquitin-like 71.3 3.2 6.9E-05 34.9 2.3 57 348-406 12-70 (87)
100 KOG2169 Zn-finger transcriptio 71.2 3.4 7.4E-05 46.4 3.2 75 17-94 299-375 (636)
101 PF05605 zf-Di19: Drought indu 69.0 3.1 6.8E-05 31.4 1.6 40 23-70 1-40 (54)
102 KOG1100 Predicted E3 ubiquitin 65.5 3.4 7.3E-05 40.1 1.5 37 27-70 161-198 (207)
103 PF10497 zf-4CXXC_R1: Zinc-fin 64.8 13 0.00027 32.4 4.8 50 24-73 7-73 (105)
104 cd01798 parkin_N amino-termina 63.0 4.4 9.5E-05 31.8 1.5 41 360-401 16-56 (70)
105 KOG2034 Vacuolar sorting prote 61.4 5.1 0.00011 46.3 2.1 41 17-57 810-851 (911)
106 KOG1428 Inhibitor of type V ad 59.9 6.5 0.00014 47.8 2.7 48 24-71 3486-3543(3738)
107 PF11976 Rad60-SLD: Ubiquitin- 58.3 3.1 6.8E-05 32.5 -0.1 47 355-402 14-60 (72)
108 KOG0314 Predicted E3 ubiquitin 57.9 4.8 0.0001 43.4 1.2 72 20-96 215-288 (448)
109 KOG1812 Predicted E3 ubiquitin 56.9 4.8 0.0001 42.5 0.9 42 24-66 146-195 (384)
110 COG5109 Uncharacterized conser 56.3 7.7 0.00017 40.1 2.3 50 20-70 332-385 (396)
111 KOG1940 Zn-finger protein [Gen 55.5 7.7 0.00017 39.4 2.1 42 25-69 159-204 (276)
112 PF05883 Baculo_RING: Baculovi 55.5 5 0.00011 36.6 0.7 34 24-57 26-67 (134)
113 COG3813 Uncharacterized protei 55.5 10 0.00022 31.3 2.4 36 43-85 27-62 (84)
114 PLN02189 cellulose synthase 55.2 6.7 0.00015 46.2 1.8 46 25-71 35-86 (1040)
115 smart00589 PRY associated with 54.1 5 0.00011 29.1 0.4 37 108-147 3-39 (52)
116 PLN02638 cellulose synthase A 52.2 8.2 0.00018 45.7 1.9 46 25-71 18-69 (1079)
117 PLN02436 cellulose synthase A 50.6 8.8 0.00019 45.4 1.8 46 25-71 37-88 (1094)
118 PF10272 Tmpp129: Putative tra 50.3 11 0.00024 39.6 2.3 26 46-71 314-350 (358)
119 PF07191 zinc-ribbons_6: zinc- 50.3 2.5 5.4E-05 34.5 -1.9 40 24-71 1-40 (70)
120 smart00213 UBQ Ubiquitin homol 50.2 9.3 0.0002 28.4 1.4 44 356-401 14-57 (64)
121 PHA02825 LAP/PHD finger-like p 50.0 18 0.0004 33.9 3.5 49 22-72 6-59 (162)
122 KOG0825 PHD Zn-finger protein 49.8 6.9 0.00015 44.8 0.8 49 22-72 94-154 (1134)
123 KOG2979 Protein involved in DN 48.7 9.8 0.00021 38.2 1.6 45 24-68 176-220 (262)
124 PLN02195 cellulose synthase A 48.1 11 0.00024 44.3 2.1 46 25-71 7-58 (977)
125 PLN02400 cellulose synthase 46.4 10 0.00022 45.0 1.5 46 26-72 38-89 (1085)
126 PF07975 C1_4: TFIIH C1-like d 46.1 24 0.00053 27.0 3.0 25 42-68 26-50 (51)
127 PF10571 UPF0547: Uncharacteri 45.4 12 0.00026 24.8 1.1 9 26-34 2-10 (26)
128 KOG3899 Uncharacterized conser 43.9 13 0.00029 38.1 1.7 30 43-72 325-365 (381)
129 PRK04023 DNA polymerase II lar 43.6 19 0.0004 42.6 3.0 65 23-92 625-694 (1121)
130 PHA02862 5L protein; Provision 42.1 22 0.00049 33.0 2.7 45 25-71 3-52 (156)
131 PLN02915 cellulose synthase A 41.8 15 0.00032 43.5 1.8 47 24-71 15-67 (1044)
132 KOG1952 Transcription factor N 41.8 19 0.00042 41.6 2.7 50 21-70 188-245 (950)
133 PF14569 zf-UDP: Zinc-binding 38.4 29 0.00062 29.0 2.5 47 24-71 9-61 (80)
134 PF06906 DUF1272: Protein of u 38.4 33 0.00071 27.0 2.7 41 25-71 6-51 (57)
135 KOG4718 Non-SMC (structural ma 37.2 13 0.00028 36.6 0.4 43 25-69 182-224 (235)
136 cd01611 GABARAP Ubiquitin doma 34.6 31 0.00067 30.4 2.3 56 348-405 37-93 (112)
137 KOG3113 Uncharacterized conser 34.6 53 0.0011 33.3 4.2 46 22-72 109-158 (293)
138 PF06844 DUF1244: Protein of u 33.8 23 0.00049 28.7 1.2 13 46-58 11-23 (68)
139 KOG0824 Predicted E3 ubiquitin 33.7 10 0.00022 38.9 -0.9 47 23-71 104-150 (324)
140 PF14353 CpXC: CpXC protein 30.7 38 0.00082 29.7 2.3 47 24-71 1-48 (128)
141 smart00531 TFIIE Transcription 30.2 39 0.00085 30.7 2.4 42 17-71 92-133 (147)
142 PRK06266 transcription initiat 30.2 27 0.00059 33.0 1.3 11 61-71 136-146 (178)
143 cd00196 UBQ Ubiquitin-like pro 29.9 33 0.00072 23.4 1.5 38 361-399 16-53 (69)
144 cd01794 DC_UbP_C dendritic cel 29.9 29 0.00063 27.6 1.3 41 360-401 16-56 (70)
145 cd01805 RAD23_N Ubiquitin-like 29.5 31 0.00067 27.1 1.4 42 360-401 18-60 (77)
146 cd01803 Ubiquitin Ubiquitin. U 29.5 30 0.00066 26.8 1.3 40 360-400 18-57 (76)
147 PF12906 RINGv: RING-variant d 29.0 24 0.00052 26.2 0.6 40 27-67 1-47 (47)
148 PF10235 Cript: Microtubule-as 28.3 27 0.00058 29.9 0.8 36 24-71 44-79 (90)
149 PF04110 APG12: Ubiquitin-like 28.0 31 0.00068 29.2 1.2 58 348-406 12-70 (87)
150 COG4077 Uncharacterized protei 27.4 48 0.001 30.5 2.3 22 365-386 57-78 (156)
151 KOG2849 Placental protein 11 [ 26.6 55 0.0012 34.6 2.9 61 354-430 208-268 (388)
152 KOG2231 Predicted E3 ubiquitin 26.5 42 0.0009 38.2 2.2 45 26-71 2-51 (669)
153 cd01807 GDX_N ubiquitin-like d 26.2 39 0.00085 26.6 1.4 44 356-401 15-58 (74)
154 KOG4185 Predicted E3 ubiquitin 25.9 13 0.00028 37.2 -1.8 45 25-70 208-265 (296)
155 PF13764 E3_UbLigase_R4: E3 ub 25.3 66 0.0014 37.4 3.5 46 364-409 16-66 (802)
156 cd01769 UBL Ubiquitin-like dom 25.2 39 0.00085 25.3 1.2 39 360-399 15-53 (69)
157 KOG3799 Rab3 effector RIM1 and 24.9 36 0.00078 31.4 1.1 27 21-52 62-88 (169)
158 PF03854 zf-P11: P-11 zinc fin 24.5 40 0.00086 25.8 1.1 28 42-71 17-45 (50)
159 cd01796 DDI1_N DNA damage indu 24.2 40 0.00086 26.6 1.1 39 360-399 17-56 (71)
160 cd01810 ISG15_repeat2 ISG15 ub 23.6 44 0.00095 26.4 1.2 43 356-400 13-55 (74)
161 KOG1695 Glutathione S-transfer 23.6 77 0.0017 30.8 3.2 45 340-386 41-86 (206)
162 PF02991 Atg8: Autophagy prote 23.5 71 0.0015 27.8 2.6 58 348-407 29-87 (104)
163 cd01793 Fubi Fubi ubiquitin-li 23.3 43 0.00094 26.4 1.2 45 355-401 12-56 (74)
164 COG1198 PriA Primosomal protei 22.9 59 0.0013 37.4 2.5 67 21-97 432-508 (730)
165 KOG3268 Predicted E3 ubiquitin 22.6 63 0.0014 31.2 2.2 47 24-71 165-227 (234)
166 PTZ00044 ubiquitin; Provisiona 22.5 44 0.00095 26.2 1.1 39 361-400 19-57 (76)
167 PF13833 EF-hand_8: EF-hand do 22.2 94 0.002 22.5 2.8 27 359-386 1-29 (54)
168 COG5242 TFB4 RNA polymerase II 22.2 37 0.00081 33.9 0.7 10 62-71 275-284 (296)
169 PF04216 FdhE: Protein involve 21.1 18 0.0004 36.3 -1.7 46 23-70 171-220 (290)
170 cd00065 FYVE FYVE domain; Zinc 20.6 59 0.0013 24.1 1.4 32 25-56 3-37 (57)
171 PTZ00380 microtubule-associate 20.3 60 0.0013 29.2 1.5 46 360-406 48-93 (121)
172 TIGR00373 conserved hypothetic 20.2 45 0.00097 30.9 0.7 11 61-71 128-138 (158)
173 cd01809 Scythe_N Ubiquitin-lik 20.0 61 0.0013 24.8 1.4 44 356-401 15-58 (72)
No 1
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=99.88 E-value=8.7e-24 Score=210.39 Aligned_cols=320 Identities=22% Similarity=0.207 Sum_probs=206.2
Q ss_pred hhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCc-CCCCCCCChHHHHHHHHH
Q 013553 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV-PLEKLRPDHTLQDVRAKI 92 (441)
Q Consensus 14 ~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~-~~~~lr~n~~L~~Lv~kl 92 (441)
..+....+...++|.+|.+||.+++|+.+|+||||++||..++.. ...||.|...++.. ++..++.|..|++|+.++
T Consensus 5 ~~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 5 RRVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 456677789999999999999999999999999999999999975 68999999998854 588999999999999999
Q ss_pred cCCchhcccCCCCCCccccCccccCcccccceeccCCcccccccccccchHHHHHHHHhhcCCCCCCCCCCCCCCccCCC
Q 013553 93 FPLKRRKVKAPEAVPSVTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARKAAALRGSNLSTDKPPKKEEDSVEDN 172 (441)
Q Consensus 93 ~p~~~~k~~a~Ed~~~vtLd~krKetAlSsLvvs~d~~sv~~g~~~rr~~~~~~ra~alr~~~~~~~~~~~ke~d~~~d~ 172 (441)
+|...+.+.. ....+..+.++..++.+.+++ ..+.+.++.-.+++
T Consensus 83 VPgl~erE~k----------------~~rdFy~~~~~~d~~~~~~~~-------------------~~~~~~~ek~~~t~ 127 (331)
T KOG2660|consen 83 VPGLQEREMK----------------RRRDFYKSRPLVDVPAGDTPE-------------------RGHVLGEEKVPDTS 127 (331)
T ss_pred cchHHHHHHH----------------HHHHHHHhCCCcccCCCCCcc-------------------cccccCcccCCCch
Confidence 9977633321 011111122233333343333 12233334445556
Q ss_pred CCCCCChhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCcccchhhHHhhhccCCCCCCCCCCcccCCC
Q 013553 173 EDGASSPETLNKLSQNVKPMQSSSSAQPSQPISSKEKDNDAEQCEGKSDLWKPLNFLVEVASRTRSLKSNSLGSEAKAEP 252 (441)
Q Consensus 173 ~~~~s~p~~~~k~~~~~~~~~~~~~~e~s~~~~~~~~~~~~e~~~~k~dl~~pln~lve~a~~~k~~~s~~~~~~~~~~~ 252 (441)
.++.+.+..--++.+++.-++... +-.|.++...+|| .+++.-.|..|.. .++... ..+
T Consensus 128 ~~~~s~~l~~~~~~~~r~d~~~~~--------------~~~e~~~~~k~l~--~~fvrcsa~~Tv~---hlkkfl--~~k 186 (331)
T KOG2660|consen 128 DEIASLSLEVEDFKQNRLDEQVSV--------------GLDEGKDTLKDLV--RRFLRCSAAATVN---HLKKFL--RKK 186 (331)
T ss_pred hhhhccccchhhcccchhhhhhhc--------------CCCcccccccccc--cceEeccHHHHHH---HHHHHH--HHH
Confidence 667777777778888888222221 3345556667777 3444333322220 000000 000
Q ss_pred CCCCCccccccccccccccccccCCCC-CCCCCCCCc--cccccchhhhhhhhhhcccCCCCCCchhhccccccccCCCC
Q 013553 253 TTITDNEAQVHKTKNKEDKCKSKSGNK-NNNPDPTTS--ETINPKRLRRIRRKTAAAFGDSNISPQAVLDAAGAKYERRN 329 (441)
Q Consensus 253 ~~~~~~~~~~~~~k~~e~~~~~k~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (441)
+ .| ...+.+-+ -.+ ...-. .+++ ..+.+++.++ +.++ .+-.-..+..++
T Consensus 187 ~---------------~~-~~~~~~idi~~~-d~~l~~~~TLk--~i~~~~~~~~------r~~p--L~l~y~v~p~v~- 238 (331)
T KOG2660|consen 187 M---------------DN-LSNKSEIDILCE-EELLGDYYTLK--DIAYAYRWRS------RDPP--LPLRYRVKPKVS- 238 (331)
T ss_pred h---------------cc-ccchhhheeecC-Cccccchhhhh--hhhhhhcccc------cCCc--ceeEeccccccc-
Confidence 0 00 00000000 001 11111 1122 1223333321 1211 111122122222
Q ss_pred CCeeEEEeccccccCCCCCCCCCcceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhHHHHHhhc
Q 013553 330 GPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQT 409 (441)
Q Consensus 330 ~~~wf~l~~~~~q~~~~~lpqi~~~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~~~~w~~~ 409 (441)
||.|. +|.++..|++++++|.++.+|+.|++ |++|++-++.+.++.+ ++ .|++||+-+.+.|..+
T Consensus 239 ---~~~L~---~~~~~~s~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~t~~~-~~-------~pt~~~~~~~~~~~~~ 303 (331)
T KOG2660|consen 239 ---RLKLT---REAEEESLAGEFASLSVSDKANSPAA-IPATSSPEPSPSTPPR-SE-------HPTVPLPSSTLRGSYT 303 (331)
T ss_pred ---cceee---ccccccccccchhhhhccccCCCccc-cccccccccCcCCCcc-CC-------CCcccCchhhhccccc
Confidence 99999 99999999999999999999999999 9999999999999988 66 8999999999999999
Q ss_pred CCCCCcccccCCCCccceEEEEeeecCCCC
Q 013553 410 ASTSDRVPAMIGSSAKDFVMVLTYARKVRD 439 (441)
Q Consensus 410 ~~~~~~~~~~~~s~~~~~vm~l~y~r~~~~ 439 (441)
.+... .++|++.|+|++.|.++..+
T Consensus 304 ~~~~~-----~~~s~~~~~~~~~~~~~~~~ 328 (331)
T KOG2660|consen 304 DAEGF-----NRKSSGHRPRKKIVSGSSKP 328 (331)
T ss_pred ccccc-----cCcccccCCceeeecCCCCC
Confidence 76332 88899999999999998764
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.17 E-value=1.6e-11 Score=89.33 Aligned_cols=40 Identities=38% Similarity=0.977 Sum_probs=31.6
Q ss_pred ccccccccccceecCCCCCcchHHHHHHhhccCCC--CCCCCC
Q 013553 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEI--ECCPVC 67 (441)
Q Consensus 27 CpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~--~~CP~C 67 (441)
||||+++|.+||++ +|||+||..||..++..... +.||.|
T Consensus 1 CpiC~~~~~~Pv~l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSL-PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcccc-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999 89999999999999876533 689987
No 3
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.3e-12 Score=126.45 Aligned_cols=96 Identities=28% Similarity=0.563 Sum_probs=82.3
Q ss_pred hHHHhhhchhhhhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCC
Q 013553 3 VEREMASNNLVVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPD 82 (441)
Q Consensus 3 v~~~m~~~~~~~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n 82 (441)
+-+...++.....+....|..++.|+||+++|+..+++..|+|.||+.||+..+.. +...||.||..+ ...+.|+.|
T Consensus 22 ~p~~~~~d~~Ei~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l--~SkrsLr~D 98 (381)
T KOG0311|consen 22 SPSSYNGDPSEIMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKL--VSKRSLRID 98 (381)
T ss_pred ChhhhcCCchhheecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhc--cccccCCCC
Confidence 34555566666677888899999999999999999999999999999999999885 668999999987 577899999
Q ss_pred hHHHHHHHHHcCCchhccc
Q 013553 83 HTLQDVRAKIFPLKRRKVK 101 (441)
Q Consensus 83 ~~L~~Lv~kl~p~~~~k~~ 101 (441)
.....|+.++|+.....+.
T Consensus 99 p~fdaLis~i~~sie~~e~ 117 (381)
T KOG0311|consen 99 PNFDALISKIYPSIEEYEA 117 (381)
T ss_pred ccHHHHHHHHhccHHHHhc
Confidence 9999999999998665544
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.10 E-value=1e-10 Score=90.17 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=54.0
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHH
Q 013553 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAK 91 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~k 91 (441)
++.||||++++.+|+.+ +|||+||+.||..|+.. ...||.|+..+ ...++.+|..|++.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~--~~~cP~~~~~~---~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLS--HGTDPVTGQPL---THEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHH--CCCCCCCcCCC---ChhhceeCHHHHHHHHh
Confidence 47899999999999999 89999999999999975 46899999886 45678899999887764
No 5
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=1.7e-10 Score=119.91 Aligned_cols=75 Identities=24% Similarity=0.558 Sum_probs=64.1
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK 96 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~ 96 (441)
..+.|+..+.|+||+++|.+|+++ +|||+||..||..++... ..||+|+..+. ...++.|..|.+|++.|....
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~Pvit-pCgH~FCs~CI~~~l~~~--~~CP~Cr~~~~---~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLT-SCSHTFCSLCIRRCLSNQ--PKCPLCRAEDQ---ESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccccccccCCCcCchhhhCccCC-CCCCchhHHHHHHHHhCC--CCCCCCCCccc---cccCccchHHHHHHHHHHHhh
Confidence 346788899999999999999988 899999999999998753 47999999863 457899999999999996544
Q ss_pred h
Q 013553 97 R 97 (441)
Q Consensus 97 ~ 97 (441)
.
T Consensus 93 ~ 93 (397)
T TIGR00599 93 P 93 (397)
T ss_pred H
Confidence 4
No 6
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.00 E-value=1e-10 Score=92.34 Aligned_cols=63 Identities=27% Similarity=0.717 Sum_probs=36.3
Q ss_pred cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHH
Q 013553 20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVR 89 (441)
Q Consensus 20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv 89 (441)
.|+..+.|++|.++|++||.+..|.|.||..||...+.. .||+|+.+ +...+++.|.+|++++
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~P---aw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTP---AWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B----S-SS----HHHHHHH
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCCh---HHHHHHHhhhhhhccC
Confidence 466779999999999999988899999999999776643 49999988 5678999999999875
No 7
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.93 E-value=8.2e-10 Score=89.06 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=54.5
Q ss_pred ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCC
Q 013553 23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPL 95 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~ 95 (441)
+.|.||||+++|.+||.+ +|||+|++.||..|+.. ....||.|+..+ ....+.+|..|++.++.|...
T Consensus 3 ~~f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~-~~~~~P~t~~~l---~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVIL-PSGHTYERSAIERWLEQ-NGGTDPFTRQPL---SESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp GGGB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCT-TSSB-TTT-SB----SGGGSEE-HHHHHHHHHHHHH
T ss_pred cccCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHc-CCCCCCCCCCcC---CcccceECHHHHHHHHHHHHH
Confidence 579999999999999999 79999999999999985 468999999886 355789999999999998543
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.91 E-value=7.4e-10 Score=104.81 Aligned_cols=54 Identities=31% Similarity=0.596 Sum_probs=44.5
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhcc--------------CCCCCCCCCCccC
Q 013553 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD--------------EEIECCPVCNIDL 71 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~--------------~~~~~CP~CR~~l 71 (441)
+.-++.+.+.|+||++.+.+|+.+ .|||.||..||..|+.. .....||+|+..+
T Consensus 11 ~~~~~~~~~~CpICld~~~dPVvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDPVVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred eeccCCCccCCccCCCcCCCcEEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 334456789999999999999999 79999999999988642 1346899999876
No 9
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.89 E-value=5.9e-10 Score=112.26 Aligned_cols=75 Identities=24% Similarity=0.520 Sum_probs=64.0
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK 96 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~ 96 (441)
.+..|...|.|-||.+||.-|+.+ +|+|+||.-||..++... ..||.|...+ ....|+.|+.|.+|+.-|-...
T Consensus 16 slk~lD~lLRC~IC~eyf~ip~it-pCsHtfCSlCIR~~L~~~--p~CP~C~~~~---~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFNIPMIT-PCSHTFCSLCIRKFLSYK--PQCPTCCVTV---TESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred hhhhhHHHHHHhHHHHHhcCceec-cccchHHHHHHHHHhccC--CCCCceeccc---chhhhhhhhHHHHHHHHHHHHH
Confidence 455677889999999999999999 799999999999999754 6799999885 4567999999999999884444
Q ss_pred h
Q 013553 97 R 97 (441)
Q Consensus 97 ~ 97 (441)
.
T Consensus 90 ~ 90 (442)
T KOG0287|consen 90 N 90 (442)
T ss_pred H
Confidence 3
No 10
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.3e-09 Score=99.85 Aligned_cols=72 Identities=31% Similarity=0.680 Sum_probs=59.6
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK 96 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~ 96 (441)
..+.+.+.+.|+||+++|.+|+++ +|||+||+.||..++. ....||.|+. .. . .+.+|..+.+++..+....
T Consensus 6 ~~~~~~~~~~C~iC~~~~~~p~~l-~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~--~--~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 6 LLEVLQEELTCPICLEYFREPVLL-PCGHNFCRACLTRSWE--GPLSCPVCRP-PS--R--NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hhhhccccccChhhHHHhhcCccc-cccchHhHHHHHHhcC--CCcCCcccCC-ch--h--ccCccHHHHHHHHHHHhcC
Confidence 345567889999999999999777 8999999999998887 5589999996 32 1 6779999999999995443
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.74 E-value=5.6e-09 Score=74.23 Aligned_cols=39 Identities=44% Similarity=1.077 Sum_probs=32.8
Q ss_pred ccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCC
Q 013553 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC 67 (441)
Q Consensus 27 CpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~C 67 (441)
|+||++.+.+|+.+..|||+||..||..++.. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 89999999999655589999999999999886 3789987
No 12
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.72 E-value=7e-09 Score=73.91 Aligned_cols=41 Identities=34% Similarity=0.930 Sum_probs=36.7
Q ss_pred ccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCC
Q 013553 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC 67 (441)
Q Consensus 27 CpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~C 67 (441)
|+||++.+.+|+++.+|||+||..||..++...+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999999955599999999999999986567889988
No 13
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.64 E-value=1.7e-08 Score=100.27 Aligned_cols=74 Identities=23% Similarity=0.509 Sum_probs=60.2
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCch
Q 013553 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKR 97 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~~ 97 (441)
..-|...+.|-||..+|.-|+.+ .|||+||.-||..++..+ ..||+||.+. ...-++.+..+..+++.|-....
T Consensus 19 L~~LDs~lrC~IC~~~i~ip~~T-tCgHtFCslCIR~hL~~q--p~CP~Cr~~~---~esrlr~~s~~~ei~es~~~~r~ 92 (391)
T COG5432 19 LKGLDSMLRCRICDCRISIPCET-TCGHTFCSLCIRRHLGTQ--PFCPVCREDP---CESRLRGSSGSREINESHARNRD 92 (391)
T ss_pred hhcchhHHHhhhhhheeecceec-ccccchhHHHHHHHhcCC--CCCccccccH---HhhhcccchhHHHHHHhhhhccH
Confidence 34456679999999999999999 799999999999999754 6799999884 34457788888888888754444
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.9e-08 Score=95.01 Aligned_cols=49 Identities=31% Similarity=0.798 Sum_probs=43.0
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhccCC-CCCCCCCCccC
Q 013553 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEE-IECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~-~~~CP~CR~~l 71 (441)
-.+|.|.||++.-++||.+ .|||.||..||++|+.... ...||+|+..+
T Consensus 45 ~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred CCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhcCCCeeCCcccccc
Confidence 4579999999999999999 6999999999999987543 47889999875
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.51 E-value=9e-08 Score=67.33 Aligned_cols=44 Identities=34% Similarity=0.885 Sum_probs=38.2
Q ss_pred cccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 26 tCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
.|+||++.+.+++.+..|||.||..|+..|+.. ....||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 599999999888888669999999999999875 45789999864
No 16
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=8.4e-08 Score=95.30 Aligned_cols=48 Identities=27% Similarity=0.678 Sum_probs=42.4
Q ss_pred ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+....|.||++-..+|.-+ +|||.||..||..|.... ..||+||..+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaT-pCGHiFCWsCI~~w~~ek--~eCPlCR~~~ 283 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSAT-PCGHIFCWSCILEWCSEK--AECPLCREKF 283 (293)
T ss_pred CCCCCceEEEecCCCCCCcC-cCcchHHHHHHHHHHccc--cCCCcccccC
Confidence 34569999999999999999 899999999999999754 4599999875
No 17
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.46 E-value=1.1e-07 Score=93.00 Aligned_cols=48 Identities=31% Similarity=0.685 Sum_probs=38.8
Q ss_pred cccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 22 AACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+...|+||++.+.++ ..+.+|+|.||..||..|+.. ...||+||..+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEe
Confidence 4568999999987654 133479999999999999864 46899999876
No 18
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.45 E-value=7.8e-08 Score=70.59 Aligned_cols=37 Identities=30% Similarity=0.854 Sum_probs=23.2
Q ss_pred cccccccccc----ceecCCCCCcchHHHHHHhhccC--CCCCCC
Q 013553 27 CPICNTLLRD----ATTISECLHTFCRKCIYDKISDE--EIECCP 65 (441)
Q Consensus 27 CpIClelf~d----PvtLs~CgHtFC~~CI~~~l~~~--~~~~CP 65 (441)
||||.+ |.+ |+.| .|||+||+.||..+.... ..+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999 699999999999988754 467887
No 19
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.43 E-value=1.5e-07 Score=70.23 Aligned_cols=45 Identities=31% Similarity=0.760 Sum_probs=38.8
Q ss_pred cccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553 24 CMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+..|.||++.+.+++.+ +|||. ||..|+..++. ....||.||..+
T Consensus 2 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i 47 (50)
T PF13920_consen 2 DEECPICFENPRDVVLL-PCGHLCFCEECAERLLK--RKKKCPICRQPI 47 (50)
T ss_dssp HSB-TTTSSSBSSEEEE-TTCEEEEEHHHHHHHHH--TTSBBTTTTBB-
T ss_pred cCCCccCCccCCceEEe-CCCChHHHHHHhHHhcc--cCCCCCcCChhh
Confidence 57899999999999988 89999 99999999987 447899999875
No 20
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.42 E-value=8.9e-08 Score=69.57 Aligned_cols=40 Identities=35% Similarity=0.908 Sum_probs=32.8
Q ss_pred cccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCC
Q 013553 26 TCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCN 68 (441)
Q Consensus 26 tCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR 68 (441)
.|+||++.|. ..+.+ +|||.||..||..|+... ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHHHhC--CcCCccC
Confidence 5999999884 45555 799999999999999764 6899996
No 21
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.4e-07 Score=88.00 Aligned_cols=48 Identities=29% Similarity=0.832 Sum_probs=39.6
Q ss_pred cccccccccccccccc--ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 21 IAACMTCPICNTLLRD--ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 21 Lee~LtCpIClelf~d--PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-+..+.||||++-+.+ |+.+ .|||.||..||...+... ..||+|+..+
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsT-kCGHvFC~~Cik~alk~~--~~CP~C~kkI 177 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVST-KCGHVFCSQCIKDALKNT--NKCPTCRKKI 177 (187)
T ss_pred cccccCCCceecchhhcccccc-ccchhHHHHHHHHHHHhC--CCCCCccccc
Confidence 3556999999999864 5566 899999999999988754 6799999765
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.29 E-value=6e-07 Score=60.90 Aligned_cols=39 Identities=44% Similarity=1.075 Sum_probs=34.3
Q ss_pred ccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCC
Q 013553 27 CPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVC 67 (441)
Q Consensus 27 CpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~C 67 (441)
|+||++....++.+ +|||.||..|+..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~-~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVL-PCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEe-cCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 89999999899888 8999999999999987 345679987
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.23 E-value=7.3e-07 Score=86.13 Aligned_cols=50 Identities=24% Similarity=0.615 Sum_probs=38.7
Q ss_pred cccccccccccccccc--------eecCCCCCcchHHHHHHhhccC----CCCCCCCCCccC
Q 013553 22 AACMTCPICNTLLRDA--------TTISECLHTFCRKCIYDKISDE----EIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dP--------vtLs~CgHtFC~~CI~~~l~~~----~~~~CP~CR~~l 71 (441)
.++..|+||++...++ -.+.+|+|.||..||..|.... ....||+||..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 4579999999987543 1344899999999999998642 235799999875
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.21 E-value=1.2e-06 Score=64.03 Aligned_cols=42 Identities=29% Similarity=0.740 Sum_probs=33.0
Q ss_pred ccccccccc--ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCc
Q 013553 26 TCPICNTLL--RDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69 (441)
Q Consensus 26 tCpIClelf--~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~ 69 (441)
.|++|.+.+ ..+..++.|||+||..|+.... .....||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 489999988 3344444899999999998887 34578999983
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=8.8e-07 Score=93.82 Aligned_cols=48 Identities=29% Similarity=0.647 Sum_probs=42.2
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhccC---CCCCCCCCCccCC
Q 013553 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE---EIECCPVCNIDLG 72 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~---~~~~CP~CR~~l~ 72 (441)
...||||+....-|+.+ .|||.||..||..+|... +...||+|+..++
T Consensus 186 ~~~CPICL~~~~~p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCccccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 79999999999999999 599999999998888753 3478999998874
No 26
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.99 E-value=5.7e-06 Score=83.71 Aligned_cols=48 Identities=27% Similarity=0.620 Sum_probs=36.4
Q ss_pred ccccccccc--ccccce--ecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553 24 CMTCPICNT--LLRDAT--TISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 24 ~LtCpICle--lf~dPv--tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
+..||+|.. ++..-+ .+.+|||.||..|+...+.. +...||.|+..+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccc
Confidence 468999988 444332 33379999999999998864 5568999998863
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.8e-06 Score=83.69 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=40.6
Q ss_pred ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.++.|.||++....|..+ +|||.||..||...+.......||+||...
T Consensus 214 ~d~kC~lC~e~~~~ps~t-~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCT-PCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCCcccc-cccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 478899999999999999 899999999998844434455699999764
No 28
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.2e-06 Score=94.36 Aligned_cols=56 Identities=29% Similarity=0.734 Sum_probs=48.1
Q ss_pred hhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCC
Q 013553 16 VKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC 73 (441)
Q Consensus 16 v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~ 73 (441)
.....+..-++||+|..-+.+.+.+ .|||.||..|+...+.. ....||.|+..||.
T Consensus 635 EElk~yK~~LkCs~Cn~R~Kd~vI~-kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 635 EELKEYKELLKCSVCNTRWKDAVIT-KCGHVFCEECVQTRYET-RQRKCPKCNAAFGA 690 (698)
T ss_pred HHHHHHHhceeCCCccCchhhHHHH-hcchHHHHHHHHHHHHH-hcCCCCCCCCCCCc
Confidence 4566678889999999999999999 79999999999887764 55789999999863
No 29
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.94 E-value=7.2e-06 Score=82.13 Aligned_cols=70 Identities=34% Similarity=0.634 Sum_probs=57.1
Q ss_pred ccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCch
Q 013553 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKR 97 (441)
Q Consensus 25 LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~~ 97 (441)
|.||+|..++++|+.+..|+|+||..||...+.+ ..+.||.|...- .-++.|.+|...+.-+++++...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~rkd--vlld~l~pD~dk~~EvE~~lkkq~ 344 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSRKD--VLLDGLTPDIDKKLEVEKALKKQR 344 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh-ccccCCCccccc--chhhccCccHHHHHHHHHHHHHHH
Confidence 9999999999999999889999999999877764 569999997531 245678888888888888866433
No 30
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.92 E-value=6e-06 Score=64.07 Aligned_cols=45 Identities=29% Similarity=0.575 Sum_probs=33.6
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCC
Q 013553 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPV 66 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~ 66 (441)
...+.|||.+..|.+||....|+|+|.+..|..++.......||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 346999999999999999778999999999999996667789998
No 31
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=6.7e-06 Score=86.02 Aligned_cols=74 Identities=26% Similarity=0.538 Sum_probs=54.9
Q ss_pred hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcC-CCCCC-CChHHHHHHHHHcCC
Q 013553 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVP-LEKLR-PDHTLQDVRAKIFPL 95 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~-~~~lr-~n~~L~~Lv~kl~p~ 95 (441)
+.+..+|.|.||...|..||++ +|||+||..||.+.+. ....||.|+..+.... ..... .|+.+..++.+|++.
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLD--QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccccchhhhhhhHhhcCCCccc-cccccccHHHHHHHhc--cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3457789999999999999999 8999999999988665 4478999998874211 11111 255556777777543
No 32
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.79 E-value=1.6e-05 Score=64.40 Aligned_cols=41 Identities=29% Similarity=0.724 Sum_probs=32.2
Q ss_pred cccccccccc------------cceecCCCCCcchHHHHHHhhccCCCCCCCCCC
Q 013553 26 TCPICNTLLR------------DATTISECLHTFCRKCIYDKISDEEIECCPVCN 68 (441)
Q Consensus 26 tCpIClelf~------------dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR 68 (441)
.|.||++-|. -++.+..|||.|...||..|+... ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN--NTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS--SB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC--CcCCCCC
Confidence 4999999982 344555799999999999999753 5899997
No 33
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=3.4e-05 Score=76.60 Aligned_cols=50 Identities=24% Similarity=0.589 Sum_probs=43.7
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
....+||+|.+.-..|.++.+|+|.||..||.........++||.|....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 44689999999999999997799999999998877655679999999764
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.59 E-value=3.2e-05 Score=73.67 Aligned_cols=69 Identities=26% Similarity=0.470 Sum_probs=51.5
Q ss_pred hhhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHH
Q 013553 13 VVKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRA 90 (441)
Q Consensus 13 ~~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~ 90 (441)
+.....|.| -|.|-||..-|..||.+ .|||.||..|....+.. ...|-+|.... ...+.....++.|+.
T Consensus 187 v~~~~~e~I--PF~C~iCKkdy~spvvt-~CGH~FC~~Cai~~y~k--g~~C~~Cgk~t----~G~f~V~~d~~kmL~ 255 (259)
T COG5152 187 VISGPGEKI--PFLCGICKKDYESPVVT-ECGHSFCSLCAIRKYQK--GDECGVCGKAT----YGRFWVVSDLQKMLN 255 (259)
T ss_pred cccCCCCCC--ceeehhchhhccchhhh-hcchhHHHHHHHHHhcc--CCcceecchhh----ccceeHHhhHHHHHh
Confidence 444444544 48999999999999999 89999999999888764 36799998763 334555666666554
No 35
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=97.45 E-value=0.00015 Score=74.15 Aligned_cols=93 Identities=30% Similarity=0.468 Sum_probs=71.5
Q ss_pred CCCCeeEEEeccccccC-----------CCCCCCCCcceeeeeC-CCchHHHHHHHHHhhc--------------CCCCh
Q 013553 328 RNGPIWFSLVASEDQRG-----------SLPLPQISSSYLRIKD-RNIPVSFIQKYLMMKL--------------DLPSE 381 (441)
Q Consensus 328 ~~~~~wf~l~~~~~q~~-----------~~~lpqi~~~y~rikd-~~~~~~~~~kyl~~kl--------------~l~~e 381 (441)
...-|=|.|++-.+... ...||.|+....|.-= +-|.|+=|.-|++.|| .+..|
T Consensus 211 e~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~ 290 (331)
T PF11816_consen 211 EPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPE 290 (331)
T ss_pred CCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCC
Confidence 44667899998763221 1246667777777654 4468999999999999 35678
Q ss_pred hhHHHHhcCccccCCCcchhHHH-HHhhcCCCCCcccccCCCCccceEEEEeeecCC
Q 013553 382 SEVEIKCMGQPVIPTLQLYNLVD-LWLQTASTSDRVPAMIGSSAKDFVMVLTYARKV 437 (441)
Q Consensus 382 ~eve~~c~g~~~~~~~~l~~~~~-~w~~~~~~~~~~~~~~~s~~~~~vm~l~y~r~~ 437 (441)
.-+||.|.||.|.|.|||.-|+- +|-+.+ | |||+|+|+.
T Consensus 291 e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~---------------d--i~L~YR~k~ 330 (331)
T PF11816_consen 291 EWLELLCNGQVLPPDMTLATVRTFIWKSSG---------------D--IVLHYRRKG 330 (331)
T ss_pred ceEEEEeCCeEcCCcCCHHHHHHhhccCCC---------------e--EEEEEEecC
Confidence 89999999999999999999999 476543 2 789999975
No 36
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.34 E-value=0.00014 Score=76.25 Aligned_cols=69 Identities=32% Similarity=0.736 Sum_probs=52.0
Q ss_pred cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013553 20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI 92 (441)
Q Consensus 20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl 92 (441)
.+.+.+.|++|...+.+|+..+.|||.||..|+..|... +..||.|+..+. ....+.....++..+.++
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~--~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELT--QAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccc--hhhccCchHHHHHHHHhc
Confidence 377889999999999999995479999999999999986 578999987753 222333344445555544
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=9.6e-05 Score=80.25 Aligned_cols=48 Identities=25% Similarity=0.541 Sum_probs=41.2
Q ss_pred cccccccccccccccc-----ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 21 IAACMTCPICNTLLRD-----ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 21 Lee~LtCpIClelf~d-----PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
......|+||.+.+.. |..+ +|+|.||..|+..|+.. ...||.||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHH--hCcCCcchhhh
Confidence 3457899999999998 6777 89999999999999975 46899999854
No 38
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00021 Score=71.96 Aligned_cols=45 Identities=27% Similarity=0.707 Sum_probs=39.6
Q ss_pred ccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-.|+||+.-..-|+.+ .|+|.||.-||...+.. +...|++||.++
T Consensus 8 ~eC~IC~nt~n~Pv~l-~C~HkFCyiCiKGsy~n-dk~~CavCR~pi 52 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNL-YCFHKFCYICIKGSYKN-DKKTCAVCRFPI 52 (324)
T ss_pred CcceeeeccCCcCccc-cccchhhhhhhcchhhc-CCCCCceecCCC
Confidence 4699999999999888 89999999999887765 557899999875
No 39
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0004 Score=71.58 Aligned_cols=46 Identities=35% Similarity=0.685 Sum_probs=38.3
Q ss_pred ccccccccccc--cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 25 MTCPICNTLLR--DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~--dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+|.||++-|. +-+.+++|.|.|-..||..|+... ...||+|+.++
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcC
Confidence 49999999885 555556999999999999999864 45799999764
No 40
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00038 Score=69.93 Aligned_cols=45 Identities=27% Similarity=0.594 Sum_probs=38.9
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-|.|-||..+|..||.+ .|+|+||..|....+.. ...|.+|....
T Consensus 241 Pf~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk--~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQK--GEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccchhh-cCCceeehhhhcccccc--CCcceeccccc
Confidence 36799999999999999 79999999999887754 36799999764
No 41
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.92 E-value=0.00085 Score=56.25 Aligned_cols=48 Identities=25% Similarity=0.540 Sum_probs=36.6
Q ss_pred cccccccccccc------------cceecCCCCCcchHHHHHHhhccC-CCCCCCCCCccC
Q 013553 24 CMTCPICNTLLR------------DATTISECLHTFCRKCIYDKISDE-EIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~------------dPvtLs~CgHtFC~~CI~~~l~~~-~~~~CP~CR~~l 71 (441)
+-.|.||...|. -|+.+-.|+|.|-..||..|+..+ ....||+||...
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 456666666553 366666799999999999999864 347999999764
No 42
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.52 E-value=0.0011 Score=71.13 Aligned_cols=50 Identities=32% Similarity=0.773 Sum_probs=41.7
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhcc---CCCCCCCCCCccCC
Q 013553 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD---EEIECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~---~~~~~CP~CR~~l~ 72 (441)
.....|.+|.+.-.+++.. .|.|+||+.||.++... ....+||.|...+.
T Consensus 534 k~~~~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3468899999999999999 79999999999776542 34589999998864
No 43
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0022 Score=66.37 Aligned_cols=47 Identities=21% Similarity=0.592 Sum_probs=38.4
Q ss_pred cccccccccccccc-------------cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 22 AACMTCPICNTLLR-------------DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~-------------dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
..+-+|.||.+-+. .|..+ +|||.|-..|+..|+..+ -+||.||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ERq--QTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLERQ--QTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHhc--cCCCcccCcc
Confidence 45789999998743 23678 899999999999999754 5799999774
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0019 Score=66.67 Aligned_cols=50 Identities=24% Similarity=0.685 Sum_probs=40.0
Q ss_pred cccccccccccccccce-------ecCCCCCcchHHHHHHhhccCC-----CCCCCCCCccC
Q 013553 22 AACMTCPICNTLLRDAT-------TISECLHTFCRKCIYDKISDEE-----IECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dPv-------tLs~CgHtFC~~CI~~~l~~~~-----~~~CP~CR~~l 71 (441)
..+..|-||++...+.. ++..|.|.||..||..|-.... ...||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 34789999999887776 2336999999999999875433 58999999764
No 45
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0024 Score=64.54 Aligned_cols=47 Identities=26% Similarity=0.576 Sum_probs=37.7
Q ss_pred cccccccccccc--cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 24 CMTCPICNTLLR--DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~--dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
...|.||+.-|. +-+...+|.|.|-..|+..|+.. -...||+||..+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~-y~~~CPvCrt~i 371 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG-YSNKCPVCRTAI 371 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhh-hcccCCccCCCC
Confidence 478999999774 33444489999999999999974 346899999875
No 46
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.89 E-value=0.0046 Score=65.14 Aligned_cols=36 Identities=22% Similarity=0.819 Sum_probs=32.3
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhcc
Q 013553 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD 58 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~ 58 (441)
++++.|+||..+|++|+++ +|+|+.|+.|.......
T Consensus 2 eeelkc~vc~~f~~epiil-~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIIL-PCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEe-ecccHHHHHHHHhhccc
Confidence 5789999999999999999 89999999999766554
No 47
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.58 E-value=0.0055 Score=63.99 Aligned_cols=47 Identities=26% Similarity=0.637 Sum_probs=38.7
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.-.|.||-+-=++-..- +|||..|..|+..|....+.-.||.||..+
T Consensus 369 FeLCKICaendKdvkIE-PCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIE-PCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHHhhccCCCcccc-cccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 34688998876665555 899999999999998776678999999876
No 48
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.26 E-value=0.0072 Score=63.90 Aligned_cols=47 Identities=32% Similarity=0.696 Sum_probs=38.2
Q ss_pred cccccccccccccccccce----ecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 20 TIAACMTCPICNTLLRDAT----TISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 20 ~Lee~LtCpIClelf~dPv----tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+.+.-+||||++-+-.-+ ++ .|.|+|-..|+..|+. ..||+||...
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~-~c~Hsfh~~cl~~w~~----~scpvcR~~q 221 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTI-LCNHSFHCSCLMKWWD----SSCPVCRYCQ 221 (493)
T ss_pred CcccCCCcchhHhhcCccccceeee-ecccccchHHHhhccc----CcChhhhhhc
Confidence 3556789999999987665 45 6999999999999875 4699999653
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.0095 Score=62.41 Aligned_cols=61 Identities=28% Similarity=0.580 Sum_probs=44.4
Q ss_pred ccccccccccccccce----ecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHH
Q 013553 23 ACMTCPICNTLLRDAT----TISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQ 86 (441)
Q Consensus 23 e~LtCpIClelf~dPv----tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~ 86 (441)
...+||||++-+.-|. .+..|||-|-..||..|+.......||.|... +-.+.+++...++
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k---atkr~i~~e~alR 67 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK---ATKRQIRPEYALR 67 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh---hHHHHHHHHHHHH
Confidence 3579999999876543 33379999999999999975456899999865 3445555544443
No 50
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.0065 Score=47.11 Aligned_cols=45 Identities=27% Similarity=0.642 Sum_probs=38.0
Q ss_pred ccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553 25 MTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-.|.||.+--.+.|.- -|||- .|..|-.+.++. .+-.||+||.++
T Consensus 8 dECTICye~pvdsVlY-tCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLY-TCGHMCMCYACGLRLKKA-LHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHH-HcchHHhHHHHHHHHHHc-cCCcCcchhhHH
Confidence 4699999999999888 59995 799999888774 567899999764
No 51
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.12 E-value=0.0058 Score=68.16 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=36.7
Q ss_pred cccccccccccccceecC--CCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553 24 CMTCPICNTLLRDATTIS--ECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs--~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.-.||+|+.-+.+-.... .|+|.||..||..|.+.. .+||+||..|.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a--qTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA--QTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc--ccCchhhhhhh
Confidence 467899988776544332 599999999999998753 67999999875
No 52
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.93 E-value=0.022 Score=58.21 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=51.7
Q ss_pred CCCCCCCcceeeeeCCCchHHHHHHHHHhhcC-CCChhhHHHHhcCccccCCCcchhHHH
Q 013553 346 LPLPQISSSYLRIKDRNIPVSFIQKYLMMKLD-LPSESEVEIKCMGQPVIPTLQLYNLVD 404 (441)
Q Consensus 346 ~~lpqi~~~y~rikd~~~~~~~~~kyl~~kl~-l~~e~eve~~c~g~~~~~~~~l~~~~~ 404 (441)
.-|+.|=+.|||. ++.++|..|+|||..|++ +.+=.+|+|.|.++.+.-..||..+|-
T Consensus 158 ~~~k~l~~~fvrc-sa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~ 216 (331)
T KOG2660|consen 158 DTLKDLVRRFLRC-SAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAY 216 (331)
T ss_pred ccccccccceEec-cHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhh
Confidence 3455555889998 799999999999999999 999999999999999999999888777
No 53
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.017 Score=60.23 Aligned_cols=46 Identities=26% Similarity=0.601 Sum_probs=35.1
Q ss_pred ccccccccccc-----cceecCCCCCcchHHHHHHhhccCCC-CCCCCCCccCC
Q 013553 25 MTCPICNTLLR-----DATTISECLHTFCRKCIYDKISDEEI-ECCPVCNIDLG 72 (441)
Q Consensus 25 LtCpIClelf~-----dPvtLs~CgHtFC~~CI~~~l~~~~~-~~CP~CR~~l~ 72 (441)
..|.||-+++- .|+.+ |||+|-..|+..|+..... ..||.|+..++
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~--cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGT--CGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccc--hhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 47999977663 33333 9999999999999986544 48999996553
No 54
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.75 E-value=0.013 Score=66.75 Aligned_cols=52 Identities=21% Similarity=0.688 Sum_probs=40.8
Q ss_pred cccccccccccccccc-cceec-----CCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 20 TIAACMTCPICNTLLR-DATTI-----SECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 20 ~Lee~LtCpIClelf~-dPvtL-----s~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+...-.|+||..++. --.++ .-|.|-|...|++.|+...+...||+||..+
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 4667788999998875 11111 1399999999999999988889999999764
No 55
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.57 E-value=0.017 Score=64.72 Aligned_cols=45 Identities=33% Similarity=0.710 Sum_probs=38.8
Q ss_pred ccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+.|+||.+ ...++.+ .|+|.||..|+...+.......||.|+..+
T Consensus 455 ~~c~ic~~-~~~~~it-~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFIT-RCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cccceee-cccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 89999999 7777777 899999999999988876666899999764
No 56
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.036 Score=55.36 Aligned_cols=67 Identities=21% Similarity=0.486 Sum_probs=51.5
Q ss_pred ccccccccccc------ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc--CCCcCCCCCCCChHHHHHHHHH
Q 013553 24 CMTCPICNTLL------RDATTISECLHTFCRKCIYDKISDEEIECCPVCNID--LGCVPLEKLRPDHTLQDVRAKI 92 (441)
Q Consensus 24 ~LtCpIClelf------~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~--l~~~~~~~lr~n~~L~~Lv~kl 92 (441)
.+.|-||.+.| ..|..+ .|||+||..|+...... ....||.||.. +.......+..|+.+..++..+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGN-SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcC-ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 36789998876 367777 69999999999988875 44567999988 3334456778888888777776
No 57
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.023 Score=62.48 Aligned_cols=44 Identities=25% Similarity=0.646 Sum_probs=34.8
Q ss_pred ccccccccccccccc----ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCc
Q 013553 20 TIAACMTCPICNTLL----RDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69 (441)
Q Consensus 20 ~Lee~LtCpIClelf----~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~ 69 (441)
.+.+.+.|+||+..| +.|+.+ .|||+.|+.|+...+.. .|| |..
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~lyn~----scp-~~~ 54 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLLYNA----SCP-TKR 54 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccc-cccchHHHHHHHhHhhc----cCC-CCc
Confidence 345568999997777 589999 79999999999887763 477 543
No 58
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.87 E-value=0.049 Score=54.04 Aligned_cols=49 Identities=18% Similarity=0.437 Sum_probs=39.2
Q ss_pred ccccccccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553 21 IAACMTCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 21 Lee~LtCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
-...+.|||+...|. .-+.|.+|||+|+..+|...- ....||+|...+.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccc
Confidence 356799999999884 456677899999999998763 2356999999874
No 59
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.035 Score=57.33 Aligned_cols=47 Identities=26% Similarity=0.653 Sum_probs=38.4
Q ss_pred cccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013553 22 AACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+..-.|-||+.-.++-+.+ +|.|. .|..|.....- ....||+||..+
T Consensus 288 ~~gkeCVIClse~rdt~vL-PCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi 335 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVL-PCRHLCLCSGCAKSLRY--QTNNCPICRQPI 335 (349)
T ss_pred cCCCeeEEEecCCcceEEe-cchhhehhHhHHHHHHH--hhcCCCccccch
Confidence 3367899999999999999 89997 69999866542 346799999875
No 60
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.024 Score=56.70 Aligned_cols=48 Identities=21% Similarity=0.520 Sum_probs=39.1
Q ss_pred ccccccccccccccc----------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 23 ACMTCPICNTLLRDA----------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~dP----------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
++-.|.||.+-+..- .++ .|+|.|-..||..|..-+..-+||-|+..+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 357899998876533 467 699999999999998776678999998765
No 61
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.55 E-value=0.017 Score=46.47 Aligned_cols=48 Identities=23% Similarity=0.543 Sum_probs=22.4
Q ss_pred cccccccccccc-c---ceecC---CCCCcchHHHHHHhhccCC---------CCCCCCCCccC
Q 013553 24 CMTCPICNTLLR-D---ATTIS---ECLHTFCRKCIYDKISDEE---------IECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~-d---PvtLs---~CgHtFC~~CI~~~l~~~~---------~~~CP~CR~~l 71 (441)
++.|+||..++. . |...- .|++.|-..||..|+.... .-.||.|+..+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 578999998765 2 33221 4888899999999987421 13599999875
No 62
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.032 Score=57.64 Aligned_cols=45 Identities=24% Similarity=0.606 Sum_probs=35.1
Q ss_pred ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+....-|-||++-..+.+.+ +|||..| |+.-... ...||+||..+
T Consensus 302 ~~~p~lcVVcl~e~~~~~fv-pcGh~cc--ct~cs~~---l~~CPvCR~rI 346 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFV-PCGHVCC--CTLCSKH---LPQCPVCRQRI 346 (355)
T ss_pred cCCCCceEEecCCccceeee-cCCcEEE--chHHHhh---CCCCchhHHHH
Confidence 44567899999999999999 8999988 7754433 24599999654
No 63
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.062 Score=54.25 Aligned_cols=45 Identities=33% Similarity=0.725 Sum_probs=33.3
Q ss_pred ccccccc-ccccce---ecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 26 TCPICNT-LLRDAT---TISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 26 tCpICle-lf~dPv---tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.||+|.. .+.+|- .+-+|+|+.|.+|+...+.. +.-.||.|...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchh
Confidence 4899964 333332 12279999999999988874 567899999875
No 64
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.48 E-value=0.035 Score=54.61 Aligned_cols=64 Identities=20% Similarity=0.562 Sum_probs=40.8
Q ss_pred cccccccccc-ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCch
Q 013553 25 MTCPICNTLL-RDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKR 97 (441)
Q Consensus 25 LtCpIClelf-~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~~ 97 (441)
..|-.|...- .+|..|+.|+|.||..|...... ..||.|+..+. .+..+..|-.-+..||...+
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~----~~C~lCkk~ir-----~i~l~~slp~~ik~~F~d~~ 68 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP----DVCPLCKKSIR-----IIQLNRSLPTDIKSYFADPP 68 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc----cccccccceee-----eeecccccchhHHHHccCcH
Confidence 4566665432 67788889999999999754332 27999998753 23334444445555554433
No 65
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=0.058 Score=53.46 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=39.7
Q ss_pred ccccccccccccccce---ecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 23 ACMTCPICNTLLRDAT---TISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~dPv---tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.-+.||+|.+.|.+.+ .|.+|||.||..|....+..+ ..||+|...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D--~v~pv~d~pl 269 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD--MVDPVTDKPL 269 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc--ccccCCCCcC
Confidence 5799999999998765 455899999999999999754 6799999875
No 66
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.036 Score=56.80 Aligned_cols=46 Identities=24% Similarity=0.571 Sum_probs=39.1
Q ss_pred ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
+.-.||||+.--.+|..+.--|..||..||..+..+. .+||+-..+
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~--~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNY--GHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhc--CCCCccCCc
Confidence 4578999999999999986569999999999999854 579987765
No 67
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.029 Score=56.69 Aligned_cols=40 Identities=35% Similarity=0.752 Sum_probs=33.7
Q ss_pred cccccccccccccceecCCCCC-cchHHHHHHhhccCCCCCCCCCCcc
Q 013553 24 CMTCPICNTLLRDATTISECLH-TFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgH-tFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
...|.||++..++-+.| +||| .-|..|-.. ...||+||..
T Consensus 300 ~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkr------m~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFL-ECGHMVTCTKCGKR------MNECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEe-ecCcEEeehhhccc------cccCchHHHH
Confidence 68899999999999999 8999 469999533 3479999965
No 68
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.048 Score=58.51 Aligned_cols=48 Identities=29% Similarity=0.613 Sum_probs=35.6
Q ss_pred cccccccccccccc-----------------cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 22 AACMTCPICNTLLR-----------------DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~-----------------dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+...-|+||..-+. +-+.+ +|.|.|-..|+..|+.. -...||+||..+
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~t-PC~HifH~~CL~~WMd~-ykl~CPvCR~pL 633 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLT-PCHHIFHRQCLLQWMDT-YKLICPVCRCPL 633 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhcccccc-chHHHHHHHHHHHHHhh-hcccCCccCCCC
Confidence 44577999987541 12233 89999999999999963 346899999775
No 69
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=92.93 E-value=0.1 Score=39.28 Aligned_cols=42 Identities=21% Similarity=0.548 Sum_probs=33.4
Q ss_pred ccccccc--ccccceecCCCC-----CcchHHHHHHhhccCCCCCCCCCC
Q 013553 26 TCPICNT--LLRDATTISECL-----HTFCRKCIYDKISDEEIECCPVCN 68 (441)
Q Consensus 26 tCpICle--lf~dPvtLs~Cg-----HtFC~~CI~~~l~~~~~~~CP~CR 68 (441)
.|-||++ .-.++... +|. |.|-..|+..|+.......||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVS-PCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEe-ccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889987 34566666 785 779999999999877778999995
No 70
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.067 Score=55.39 Aligned_cols=46 Identities=26% Similarity=0.547 Sum_probs=38.6
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
.++-.||||.---..+|.. +|+|.-|..||.+++-+. ..|-.|+..
T Consensus 420 sEd~lCpICyA~pi~Avf~-PC~H~SC~~CI~qHlmN~--k~CFfCktT 465 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFA-PCSHRSCYGCITQHLMNC--KRCFFCKTT 465 (489)
T ss_pred cccccCcceecccchhhcc-CCCCchHHHHHHHHHhcC--CeeeEecce
Confidence 3567899999999999999 899999999998887643 568888765
No 71
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=0.11 Score=54.62 Aligned_cols=49 Identities=22% Similarity=0.497 Sum_probs=35.3
Q ss_pred ccccccccccccccc--cceecCCCCCcchHHHHHHhhccC---C---CCCCCCCCc
Q 013553 21 IAACMTCPICNTLLR--DATTISECLHTFCRKCIYDKISDE---E---IECCPVCNI 69 (441)
Q Consensus 21 Lee~LtCpIClelf~--dPvtLs~CgHtFC~~CI~~~l~~~---~---~~~CP~CR~ 69 (441)
....+.|.||++-.. .-+...+|+|.||+.|+..++.-. + ...||.|..
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 344689999998763 455555999999999998886532 2 267777653
No 72
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.71 E-value=0.072 Score=59.36 Aligned_cols=67 Identities=19% Similarity=0.559 Sum_probs=49.3
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhccCC-CCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013553 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEE-IECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI 92 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~-~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl 92 (441)
...+.|+||...+..|+.+ .|-|.||..|+...+.... ...||+|+..+ .....+.-.....++..+
T Consensus 19 ~k~lEc~ic~~~~~~p~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~---eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDI---EKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhhccCCceeEEeeccchh-hhhHHHHhhhhhceeeccCccccchhhhhhh---hhhhccccchHHHHHHHh
Confidence 3469999999999999888 7999999999977665433 57899999764 344444444444555544
No 73
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.62 E-value=0.16 Score=50.44 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=38.8
Q ss_pred hhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhcc
Q 013553 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD 58 (441)
Q Consensus 14 ~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~ 58 (441)
..+-++.|.++--|++|++-+++||.. +=||.||+.||.+++-.
T Consensus 33 ~RLgrDsiK~FdcCsLtLqPc~dPvit-~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 33 ERLGRDSIKPFDCCSLTLQPCRDPVIT-PDGYLFDREAILEYILA 76 (303)
T ss_pred hhhcccccCCcceeeeecccccCCccC-CCCeeeeHHHHHHHHHH
Confidence 455678888899999999999999999 89999999999988753
No 74
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=90.61 E-value=0.065 Score=39.97 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=26.0
Q ss_pred cccCccccCcccccceeccCCcccccccccccchHHHHHH
Q 013553 109 VTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARKA 148 (441)
Q Consensus 109 vtLd~krKetAlSsLvvs~d~~sv~~g~~~rr~~~~~~ra 148 (441)
++||. +||+++|+||.|.+++.++...+..+.+++|+
T Consensus 1 ltlDp---~TAh~~L~lS~d~k~v~~~~~~~~~p~~peRF 37 (49)
T PF13765_consen 1 LTLDP---NTAHPSLVLSEDGKSVRYSEQPQNYPDNPERF 37 (49)
T ss_dssp -EB-T---TTS-TTEEEETTSSEEEE-SST-S--S-TTS-
T ss_pred CEECc---ccCCCCeEECCCCeEEEEccCCccCCCCCCcc
Confidence 47888 99999999999999999999998888877775
No 75
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.36 E-value=0.14 Score=38.75 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=25.1
Q ss_pred cccccccccccccceecCCCCCcchHHHH--HHhhccCCCCCCCCCCc
Q 013553 24 CMTCPICNTLLRDATTISECLHTFCRKCI--YDKISDEEIECCPVCNI 69 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI--~~~l~~~~~~~CP~CR~ 69 (441)
.|.|||....+..|+....|.|.-|.+=. ...........||.|..
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence 37899999999999999899999775442 22222235588999975
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.28 E-value=0.3 Score=36.94 Aligned_cols=43 Identities=35% Similarity=0.739 Sum_probs=20.4
Q ss_pred ccccccccc--c-ceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 27 CPICNTLLR--D-ATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 27 CpIClelf~--d-PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
||+|.+-+. + -+.--+||+-+|+.|......+ +...||.||..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCC
Confidence 678877661 1 0111259999999998877753 45789999975
No 77
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.10 E-value=0.26 Score=50.30 Aligned_cols=62 Identities=19% Similarity=0.494 Sum_probs=46.5
Q ss_pred ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013553 21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF 93 (441)
Q Consensus 21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~ 93 (441)
+.+-+.||||.+++..|+.--.=||.-|..|-.... ..||.|+..++ ++ ....++.+++..+
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~-----~~CP~Cr~~~g-----~~-R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS-----NKCPTCRLPIG-----NI-RCRAMEKVAEAVL 106 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhhc-----ccCCccccccc-----cH-HHHHHHHHHHhce
Confidence 456799999999999998762238999999975433 56999997764 33 4666777777764
No 78
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.71 E-value=0.15 Score=39.54 Aligned_cols=45 Identities=22% Similarity=0.634 Sum_probs=34.8
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.....|-.|...-...+.+ +|||..|..|.... .-.-||.|...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-pCgH~I~~~~f~~~----rYngCPfC~~~~ 49 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVL-PCGHLICDNCFPGE----RYNGCPFCGTPF 49 (55)
T ss_pred ccceeEEEccccccccccc-cccceeeccccChh----hccCCCCCCCcc
Confidence 4456788888887888888 89999999997432 224699999875
No 79
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.59 E-value=0.21 Score=51.70 Aligned_cols=51 Identities=24% Similarity=0.516 Sum_probs=39.8
Q ss_pred hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
+.=++...|-||-+-+.--..+ +|+|..|.-|-.+.-.......||.|+..
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~-PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARY-PCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccccceeEEecCCceEEEec-cCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 3446789999999988776667 89999999998665433345789999976
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.31 E-value=0.42 Score=43.42 Aligned_cols=58 Identities=21% Similarity=0.459 Sum_probs=44.0
Q ss_pred hhhhhhhcccccccccccccccccceecCC---CCCcchHHHHHHhhccC-CCCCCCCCCccCC
Q 013553 13 VVKVKRETIAACMTCPICNTLLRDATTISE---CLHTFCRKCIYDKISDE-EIECCPVCNIDLG 72 (441)
Q Consensus 13 ~~~v~~e~Lee~LtCpIClelf~dPvtLs~---CgHtFC~~CI~~~l~~~-~~~~CP~CR~~l~ 72 (441)
+.+|-.+. .-..|-||.+...+...+.+ ||...|..|-...|..- -...||+|+..+.
T Consensus 71 vmnvF~d~--~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 71 VMNVFLDP--KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred HheeecCC--CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 34444453 56899999998887777754 99999999997776643 3589999998864
No 81
>PHA03096 p28-like protein; Provisional
Probab=88.14 E-value=0.27 Score=49.81 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=31.5
Q ss_pred cccccccccccc-ce------ecCCCCCcchHHHHHHhhccC-CCCCCCCCCc
Q 013553 25 MTCPICNTLLRD-AT------TISECLHTFCRKCIYDKISDE-EIECCPVCNI 69 (441)
Q Consensus 25 LtCpIClelf~d-Pv------tLs~CgHtFC~~CI~~~l~~~-~~~~CP~CR~ 69 (441)
-.|.||++.... +. +++.|-|.||..||..|.... ....||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 689999985532 11 345799999999999887653 2345666654
No 82
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.88 E-value=0.21 Score=52.44 Aligned_cols=48 Identities=19% Similarity=0.598 Sum_probs=38.4
Q ss_pred cccccccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCCc
Q 013553 22 AACMTCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69 (441)
Q Consensus 22 ee~LtCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~ 69 (441)
+-.+.|-.|.+.+- +-..-.+|.|.|-..|++.++.+.+.-.||.||.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 44699999998762 2233348999999999999998777789999994
No 83
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=87.76 E-value=0.47 Score=39.65 Aligned_cols=44 Identities=27% Similarity=0.616 Sum_probs=31.7
Q ss_pred ccccccccc----ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 26 TCPICNTLL----RDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 26 tCpIClelf----~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+|+-|..-. .-|+..--|-|.|-..||.+|+... ..||+|+...
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk--~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK--GVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC--CCCCCCCcee
Confidence 455554422 2455555699999999999999864 5799999764
No 84
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.44 E-value=0.18 Score=41.73 Aligned_cols=36 Identities=25% Similarity=0.555 Sum_probs=27.8
Q ss_pred cceecCCCCCcchHHHHHHhhccCC-CCCCCCCCccC
Q 013553 36 DATTISECLHTFCRKCIYDKISDEE-IECCPVCNIDL 71 (441)
Q Consensus 36 dPvtLs~CgHtFC~~CI~~~l~~~~-~~~CP~CR~~l 71 (441)
-|..+--|.|.|-..||.+|+.... .-.||+||...
T Consensus 44 CPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 44 CPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 3555545999999999999987542 36899999754
No 85
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.38 E-value=0.61 Score=49.06 Aligned_cols=48 Identities=15% Similarity=0.432 Sum_probs=40.0
Q ss_pred cccccccccccccc---ccceecCCCCCcchHHHHHHhhccCCC--CCCCCCCcc
Q 013553 21 IAACMTCPICNTLL---RDATTISECLHTFCRKCIYDKISDEEI--ECCPVCNID 70 (441)
Q Consensus 21 Lee~LtCpIClelf---~dPvtLs~CgHtFC~~CI~~~l~~~~~--~~CP~CR~~ 70 (441)
++.-|+|||=.+.- .-|+.+ .|||..|+.-|.+...+ +. +.||.|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~n-g~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKN-GSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeee-eccceecHHHHHHHhhC-CCeeeeCCCCCcc
Confidence 67789999987765 468888 79999999999888775 44 999999765
No 86
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.09 E-value=0.65 Score=47.06 Aligned_cols=70 Identities=24% Similarity=0.433 Sum_probs=49.4
Q ss_pred ccccccccccccccceecCCC----CCcchHHHHHHhhccCC---CCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCC
Q 013553 23 ACMTCPICNTLLRDATTISEC----LHTFCRKCIYDKISDEE---IECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPL 95 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~C----gHtFC~~CI~~~l~~~~---~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~ 95 (441)
.-|.|-+|.+-|.|.... .| .|-||+-|-...+..++ ...||.-..- .-+..-.+...|+.-|..|+..
T Consensus 267 apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkC---PLvgS~vPWAFMQGEIatILag 342 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKC---PLVGSNVPWAFMQGEIATILAG 342 (352)
T ss_pred CceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhhcCCCceeCCCCCcC---cccCCcccHHHhhhhHHHHhcc
Confidence 348999999999998888 67 69999999998887652 3566654321 2233445667777777777654
Q ss_pred c
Q 013553 96 K 96 (441)
Q Consensus 96 ~ 96 (441)
.
T Consensus 343 d 343 (352)
T KOG3579|consen 343 D 343 (352)
T ss_pred c
Confidence 3
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=84.82 E-value=0.54 Score=48.71 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=30.7
Q ss_pred ccccccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 23 ACMTCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+++ ||+|.+-+. .-..--+||...|+-|....-. .-.-.||.||...
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq-~lngrcpacrr~y 63 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQ-NLNGRCPACRRKY 63 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHh-hccCCChHhhhhc
Confidence 344 999988652 1111126999999999754332 2346799999765
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.42 E-value=0.61 Score=53.16 Aligned_cols=45 Identities=22% Similarity=0.523 Sum_probs=37.5
Q ss_pred ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
+-+.-.|..|...+.-|+.-..|||.|-..|+. .....||.|+..
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLPE 881 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccchh
Confidence 344568999999999999888899999999987 244679999864
No 89
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=83.10 E-value=0.42 Score=39.99 Aligned_cols=33 Identities=24% Similarity=0.543 Sum_probs=27.0
Q ss_pred ccccccccccccccc-cceecCCCCCcchHHHHH
Q 013553 21 IAACMTCPICNTLLR-DATTISECLHTFCRKCIY 53 (441)
Q Consensus 21 Lee~LtCpIClelf~-dPvtLs~CgHtFC~~CI~ 53 (441)
|.+.-.|++|...|. .++...+|||.|...|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 566788999988765 666777999999999974
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=82.87 E-value=0.54 Score=48.17 Aligned_cols=42 Identities=26% Similarity=0.690 Sum_probs=28.4
Q ss_pred ccccccccccc-ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 24 CMTCPICNTLL-RDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 24 ~LtCpIClelf-~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
--.|--|..-+ .--..| +|.|.||.+|... +..+.||.|...
T Consensus 90 VHfCd~Cd~PI~IYGRmI-PCkHvFCl~CAr~----~~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMI-PCKHVFCLECARS----DSDKICPLCDDR 132 (389)
T ss_pred eEeecccCCcceeeeccc-ccchhhhhhhhhc----CccccCcCcccH
Confidence 34567775533 333445 8999999999753 235789999754
No 91
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=82.74 E-value=0.3 Score=48.40 Aligned_cols=47 Identities=28% Similarity=0.659 Sum_probs=33.7
Q ss_pred ccccccccc-ccccc-ee---cCCCCCcchHHHHHHhhccCCCCCCC--CCCccC
Q 013553 24 CMTCPICNT-LLRDA-TT---ISECLHTFCRKCIYDKISDEEIECCP--VCNIDL 71 (441)
Q Consensus 24 ~LtCpICle-lf~dP-vt---Ls~CgHtFC~~CI~~~l~~~~~~~CP--~CR~~l 71 (441)
+-.||||.. .+-+| +. -.+|-|..|.+|+.+.+.. +.-.|| -|...|
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHH
Confidence 468999965 22223 11 1159999999999999885 667899 887654
No 92
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=80.32 E-value=0.48 Score=48.32 Aligned_cols=51 Identities=22% Similarity=0.443 Sum_probs=38.1
Q ss_pred cccccccccccccc-cc-eecCCCCCcchHHHHHHhhccC---------------------CCCCCCCCCccCC
Q 013553 22 AACMTCPICNTLLR-DA-TTISECLHTFCRKCIYDKISDE---------------------EIECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf~-dP-vtLs~CgHtFC~~CI~~~l~~~---------------------~~~~CP~CR~~l~ 72 (441)
.....|.||+--|. .| ++...|-|-|-..|+.+++..- ..-.||+||..++
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 45789999998774 33 6666899999999997776541 1256999998764
No 93
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=79.93 E-value=1.6 Score=40.81 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=16.7
Q ss_pred ccccccccccccccceecC
Q 013553 23 ACMTCPICNTLLRDATTIS 41 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs 41 (441)
++.+||||++..-++|.|.
T Consensus 1 ed~~CpICme~PHNAVLLl 19 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLL 19 (162)
T ss_pred CCccCceeccCCCceEEEE
Confidence 3579999999999999884
No 94
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=79.66 E-value=0.52 Score=55.80 Aligned_cols=52 Identities=27% Similarity=0.585 Sum_probs=40.1
Q ss_pred hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
..+...+.|+||++++.+--.+..|||-||..|+..|... ...||.|....+
T Consensus 1148 ~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~--~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA--SSRCPICKSIKG 1199 (1394)
T ss_pred HHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH--hccCcchhhhhh
Confidence 3455667999999999843333369999999999998864 467999986643
No 95
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.26 E-value=3.5 Score=40.78 Aligned_cols=46 Identities=33% Similarity=0.767 Sum_probs=37.1
Q ss_pred ccccccccccc--cceecCCCCCcchHHHHHHhhccC------CCCCCCCCCccC
Q 013553 25 MTCPICNTLLR--DATTISECLHTFCRKCIYDKISDE------EIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~--dPvtLs~CgHtFC~~CI~~~l~~~------~~~~CP~CR~~l 71 (441)
-.|.+|..-+. +.+.+ -|.|.|-..|+..+...- ....||.|...+
T Consensus 51 pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 56999998774 77778 699999999998886542 347899999876
No 96
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=76.97 E-value=1.6 Score=38.12 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=23.4
Q ss_pred CCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 42 ECLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 42 ~CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
.|-|.|-..||.+|+... ..||+|...
T Consensus 80 ~CNHaFH~hCisrWlktr--~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR--NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc--CcCCCcCcc
Confidence 499999999999999753 689999865
No 97
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.34 E-value=4.4 Score=43.33 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=29.1
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhcc
Q 013553 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD 58 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~ 58 (441)
....+|.||.+-+...+....|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 3458999999988753333489999999999888765
No 98
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=75.24 E-value=3.5 Score=30.22 Aligned_cols=41 Identities=20% Similarity=0.585 Sum_probs=23.5
Q ss_pred ccccccccccceecC--CCCCcchHHHHHHhhccCCCCCCCCC
Q 013553 27 CPICNTLLRDATTIS--ECLHTFCRKCIYDKISDEEIECCPVC 67 (441)
Q Consensus 27 CpIClelf~dPvtLs--~CgHtFC~~CI~~~l~~~~~~~CP~C 67 (441)
|.+|.++...-+.=. .|+-.+-..|+..+++......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 677888877665442 48888889999999987655579987
No 99
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=71.29 E-value=3.2 Score=34.94 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=43.5
Q ss_pred CCCCCcceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCC--CcchhHHHHH
Q 013553 348 LPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPT--LQLYNLVDLW 406 (441)
Q Consensus 348 lpqi~~~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~--~~l~~~~~~w 406 (441)
+|+|...=..| .++++|+.+..+|.++|+|.++.-|-+.|.. .+.|+ .++.+|.+..
T Consensus 12 ~p~l~k~kflv-~~~~tv~~~~~~lrk~L~l~~~~slflyvnn-~f~p~~d~~~g~LY~~~ 70 (87)
T cd01612 12 APILKQKVFKI-SATQSFQAVIDFLRKRLKLKASDSLFLYINN-SFAPSPDENVGNLYRCF 70 (87)
T ss_pred CccccccEEEe-CCCCCHHHHHHHHHHHhCCCccCeEEEEECC-ccCCCchhHHHHHHHhc
Confidence 68887654444 7899999999999999999999989888865 43443 4666666644
No 100
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=71.24 E-value=3.4 Score=46.35 Aligned_cols=75 Identities=19% Similarity=0.346 Sum_probs=56.6
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccC--CCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013553 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE--EIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~--~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p 94 (441)
..-.+.-.|.|||+..-+.-|..-..|.|.-|++-..-...+. ....||+|.+. ...+.+..+..+.+++..+-.
T Consensus 299 ~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~---~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 299 ATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKA---APFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred eeccceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCcc---ccccchhhhHHHHHHHhhccC
Confidence 3344666799999999888777766899998888764433332 45899999987 467888888888888877754
No 101
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=68.95 E-value=3.1 Score=31.43 Aligned_cols=40 Identities=23% Similarity=0.678 Sum_probs=27.1
Q ss_pred ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
+.|.||.|...|.. .. ++..|......+.....||+|...
T Consensus 1 ~~f~CP~C~~~~~~-~~-------L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-SS-------LVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCH-HH-------HHHHHHhHCcCCCCCccCCCchhh
Confidence 35899999995443 23 345576666554456899999853
No 102
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.47 E-value=3.4 Score=40.10 Aligned_cols=37 Identities=24% Similarity=0.710 Sum_probs=28.3
Q ss_pred ccccccccccceecCCCCC-cchHHHHHHhhccCCCCCCCCCCcc
Q 013553 27 CPICNTLLRDATTISECLH-TFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 27 CpIClelf~dPvtLs~CgH-tFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
|-+|..-=..-+.+ +|-| .+|..|-.. ...||.|+..
T Consensus 161 Cr~C~~~~~~Vlll-PCrHl~lC~~C~~~------~~~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGEREATVLLL-PCRHLCLCGICDES------LRICPICRSP 198 (207)
T ss_pred ceecCcCCceEEee-cccceEeccccccc------CccCCCCcCh
Confidence 99998877775555 8999 589999422 4569999965
No 103
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=64.83 E-value=13 Score=32.40 Aligned_cols=50 Identities=30% Similarity=0.620 Sum_probs=32.9
Q ss_pred cccccccccccccceec-------CCC---CCcchHHHHHHhhcc-------CCCCCCCCCCccCCC
Q 013553 24 CMTCPICNTLLRDATTI-------SEC---LHTFCRKCIYDKISD-------EEIECCPVCNIDLGC 73 (441)
Q Consensus 24 ~LtCpIClelf~dPvtL-------s~C---gHtFC~~CI~~~l~~-------~~~~~CP~CR~~l~~ 73 (441)
..+|..|..--.+..+. ..| .-.||..||...+.+ .....||.|+-...+
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnC 73 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNC 73 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCC
Confidence 35677776644444433 134 667999999777654 245889999977653
No 104
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=63.04 E-value=4.4 Score=31.75 Aligned_cols=41 Identities=10% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013553 360 DRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 360 d~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
|.+.+|.-||++|..+.|+.. ++..+.+.|+++....+|.+
T Consensus 16 ~~~~tV~~lK~~i~~~~gi~~-~~q~Li~~G~~L~d~~~l~~ 56 (70)
T cd01798 16 DPDTDIKQLKEVVAKRQGVPP-DQLRVIFAGKELRNTTTIQE 56 (70)
T ss_pred CCCChHHHHHHHHHHHHCCCH-HHeEEEECCeECCCCCcHHH
Confidence 467899999999999999966 46788999999988877754
No 105
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.37 E-value=5.1 Score=46.26 Aligned_cols=41 Identities=22% Similarity=0.499 Sum_probs=33.7
Q ss_pred hhhccccccccccccc-ccccceecCCCCCcchHHHHHHhhc
Q 013553 17 KRETIAACMTCPICNT-LLRDATTISECLHTFCRKCIYDKIS 57 (441)
Q Consensus 17 ~~e~Lee~LtCpICle-lf~dPvtLs~CgHtFC~~CI~~~l~ 57 (441)
..-.++..-.|.+|.. ++..|..+.+|||-|-+.||.....
T Consensus 810 ry~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 810 RYRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ceEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3445777889999977 5678999999999999999976654
No 106
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=59.93 E-value=6.5 Score=47.83 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=31.4
Q ss_pred ccccccccc--ccccceecCCCCCcchHHHHHHhhccC--------CCCCCCCCCccC
Q 013553 24 CMTCPICNT--LLRDATTISECLHTFCRKCIYDKISDE--------EIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpICle--lf~dPvtLs~CgHtFC~~CI~~~l~~~--------~~~~CP~CR~~l 71 (441)
+-.|-||+. +-..|..-..|+|.|-..|....+.+. +-..||+|...+
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 455777764 233444444899999999986655432 225899998664
No 107
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=58.26 E-value=3.1 Score=32.52 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=38.8
Q ss_pred eeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhH
Q 013553 355 YLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNL 402 (441)
Q Consensus 355 y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~ 402 (441)
+++|+ -+-|++-|+.++.+++|+..+..+.+...|++|.+..|+.++
T Consensus 14 ~~~v~-~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~ 60 (72)
T PF11976_consen 14 KFKVK-PTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL 60 (72)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred EEEEC-CCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence 34444 467899999999999999999999999999999999998765
No 108
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=4.8 Score=43.37 Aligned_cols=72 Identities=29% Similarity=0.677 Sum_probs=50.9
Q ss_pred ccccccccccc-ccccccceec-CCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013553 20 TIAACMTCPIC-NTLLRDATTI-SECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK 96 (441)
Q Consensus 20 ~Lee~LtCpIC-lelf~dPvtL-s~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~ 96 (441)
.+.++++|++| ...|.+...+ ..|+.+||-.||+..+.......|..|... -..+.+...+...+...+...
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~~-----~~~~~~p~~~r~~~n~~~a~~ 288 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNVL-----ADDLLPPKTLRDTINRILASG 288 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhccc-----ccccCCchhhHHHHHHHHhhh
Confidence 35788999999 7788777766 458889999999988876655666666543 234556666666666665443
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.87 E-value=4.8 Score=42.51 Aligned_cols=42 Identities=26% Similarity=0.640 Sum_probs=27.8
Q ss_pred cccccccc-ccccc---ceecCCCCCcchHHHHHHhhccC----CCCCCCC
Q 013553 24 CMTCPICN-TLLRD---ATTISECLHTFCRKCIYDKISDE----EIECCPV 66 (441)
Q Consensus 24 ~LtCpICl-elf~d---PvtLs~CgHtFC~~CI~~~l~~~----~~~~CP~ 66 (441)
..+|.||. +.... -.+. .|+|-||..|+..++... ....||.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 67899999 33221 1123 699999999998887632 2356654
No 110
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=56.32 E-value=7.7 Score=40.13 Aligned_cols=50 Identities=18% Similarity=0.380 Sum_probs=39.3
Q ss_pred ccccccccccccccc---ccceecCCCCCcchHHHHHHhhccCC-CCCCCCCCcc
Q 013553 20 TIAACMTCPICNTLL---RDATTISECLHTFCRKCIYDKISDEE-IECCPVCNID 70 (441)
Q Consensus 20 ~Lee~LtCpIClelf---~dPvtLs~CgHtFC~~CI~~~l~~~~-~~~CP~CR~~ 70 (441)
.++.-|+||+=.+.- .-|+.+ .|||..-..-+.....++. .|.||.|-..
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml-~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVML-ECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhcccCCCeee-eccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 477789999887765 367888 7999999999887766532 4899999754
No 111
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=55.55 E-value=7.7 Score=39.37 Aligned_cols=42 Identities=33% Similarity=0.861 Sum_probs=33.3
Q ss_pred ccccccccccc----cceecCCCCCcchHHHHHHhhccCCCCCCCCCCc
Q 013553 25 MTCPICNTLLR----DATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69 (441)
Q Consensus 25 LtCpIClelf~----dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~ 69 (441)
+.||||.+++. .|..+ .|||..-..|+...... + ..||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~-~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVL-KCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCcc-CcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 55999998753 45555 79999889998877764 4 99999986
No 112
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=55.54 E-value=5 Score=36.62 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=26.1
Q ss_pred ccccccccccccc--ceecCCCC------CcchHHHHHHhhc
Q 013553 24 CMTCPICNTLLRD--ATTISECL------HTFCRKCIYDKIS 57 (441)
Q Consensus 24 ~LtCpIClelf~d--PvtLs~Cg------HtFC~~CI~~~l~ 57 (441)
.+.|.||++-+.+ -+....|| |.||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6889999998877 44443566 5689999999943
No 113
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.54 E-value=10 Score=31.31 Aligned_cols=36 Identities=31% Similarity=0.682 Sum_probs=24.6
Q ss_pred CCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHH
Q 013553 43 CLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTL 85 (441)
Q Consensus 43 CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L 85 (441)
-.||||..|....+. -.||.|.-.|. .+.+++...|
T Consensus 27 fEcTFCadCae~~l~----g~CPnCGGelv---~RP~RPaa~L 62 (84)
T COG3813 27 FECTFCADCAENRLH----GLCPNCGGELV---ARPIRPAAKL 62 (84)
T ss_pred EeeehhHhHHHHhhc----CcCCCCCchhh---cCcCChHHHH
Confidence 457999999987764 36999997752 3445554433
No 114
>PLN02189 cellulose synthase
Probab=55.21 E-value=6.7 Score=46.19 Aligned_cols=46 Identities=28% Similarity=0.665 Sum_probs=33.7
Q ss_pred ccccccccccc-----ccee-cCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 25 MTCPICNTLLR-----DATT-ISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~-----dPvt-Ls~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-+|.||.+-+- ++.. --+|+--.|+.|. ++.+.++...||.|+...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRY 86 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCch
Confidence 38999998742 2221 1148888999998 566667889999999875
No 115
>smart00589 PRY associated with SPRY domains.
Probab=54.05 E-value=5 Score=29.13 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=28.2
Q ss_pred ccccCccccCcccccceeccCCcccccccccccchHHHHH
Q 013553 108 SVTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARK 147 (441)
Q Consensus 108 ~vtLd~krKetAlSsLvvs~d~~sv~~g~~~rr~~~~~~r 147 (441)
.++||. ++|++.|+|+.+.+.+......+.....+++
T Consensus 3 ~vtld~---~tA~~~l~lS~d~~~v~~~~~~~~~~~~~~r 39 (52)
T smart00589 3 DVTLDP---DTAHPYLLLSEDRRSVRYGDLKQSLPDNPER 39 (52)
T ss_pred CCEECc---ccCCCCeEECCCCCEEEECCCCCCCCCCccc
Confidence 378888 9999999999999998877655444444444
No 116
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=52.17 E-value=8.2 Score=45.66 Aligned_cols=46 Identities=22% Similarity=0.658 Sum_probs=33.7
Q ss_pred ccccccccccc-----cc-eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 25 MTCPICNTLLR-----DA-TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~-----dP-vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-.|.||.+-+- +| |.--+|+--.|+.|. ++-+.++.-.||.|+...
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrY 69 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKY 69 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCch
Confidence 38999998731 11 111268988999997 666667889999999875
No 117
>PLN02436 cellulose synthase A
Probab=50.58 E-value=8.8 Score=45.42 Aligned_cols=46 Identities=28% Similarity=0.717 Sum_probs=33.5
Q ss_pred ccccccccccc-----cceec-CCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 25 MTCPICNTLLR-----DATTI-SECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~-----dPvtL-s~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-.|.||.+-+- ++..- -+|+.-.|+.|. ++.+.++...||.|+...
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRY 88 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCch
Confidence 38999998742 22211 148888999998 566667889999999875
No 118
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=50.33 E-value=11 Score=39.63 Aligned_cols=26 Identities=19% Similarity=0.604 Sum_probs=20.6
Q ss_pred cchHHHHHHhhccC-----------CCCCCCCCCccC
Q 013553 46 TFCRKCIYDKISDE-----------EIECCPVCNIDL 71 (441)
Q Consensus 46 tFC~~CI~~~l~~~-----------~~~~CP~CR~~l 71 (441)
-.|.+|+-+|+... +...||+||+.+
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 45889999998753 357999999886
No 119
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=50.28 E-value=2.5 Score=34.46 Aligned_cols=40 Identities=33% Similarity=0.560 Sum_probs=22.1
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
++.||.|..-|..- . +|.+|..|-..+.. ...||.|...|
T Consensus 1 e~~CP~C~~~L~~~----~-~~~~C~~C~~~~~~---~a~CPdC~~~L 40 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----G-GHYHCEACQKDYKK---EAFCPDCGQPL 40 (70)
T ss_dssp --B-SSS-SBEEEE----T-TEEEETTT--EEEE---EEE-TTT-SB-
T ss_pred CCcCCCCCCccEEe----C-CEEECcccccccee---cccCCCcccHH
Confidence 36899999876532 2 78889999765543 25799998775
No 120
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=50.18 E-value=9.3 Score=28.37 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=34.1
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013553 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
++|. .+.+|.-|+..|.+++|+.. .+.-|.+.|+++....+|..
T Consensus 14 ~~v~-~~~tv~~lk~~i~~~~~~~~-~~~~L~~~g~~L~d~~tL~~ 57 (64)
T smart00213 14 LEVK-PSDTVSELKEKIAELTGIPV-EQQRLIYKGKVLEDDRTLAD 57 (64)
T ss_pred EEEC-CCCcHHHHHHHHHHHHCCCH-HHEEEEECCEECCCCCCHHH
Confidence 5553 56799999999999999954 46788899998877655543
No 121
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=50.03 E-value=18 Score=33.95 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=36.0
Q ss_pred cccccccccccccccceecCCCCCcc-----hHHHHHHhhccCCCCCCCCCCccCC
Q 013553 22 AACMTCPICNTLLRDATTISECLHTF-----CRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtF-----C~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
...-.|-||.+--. +... +|...- -.+|+.+|+...+...|+.|+..+.
T Consensus 6 ~~~~~CRIC~~~~~-~~~~-PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTN-YCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC-CccC-CcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 44578999987653 2222 565432 7899999999888899999998754
No 122
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.80 E-value=6.9 Score=44.82 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=33.0
Q ss_pred ccccccccccccccc--------ceecCCCCCcchHHHHHHhhccC----CCCCCCCCCccCC
Q 013553 22 AACMTCPICNTLLRD--------ATTISECLHTFCRKCIYDKISDE----EIECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf~d--------PvtLs~CgHtFC~~CI~~~l~~~----~~~~CP~CR~~l~ 72 (441)
.+..+|++|..-|.+ |+.. |+|.||..||..|.... ....|+.|...|.
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~--~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQT--HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhh--hhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 345677777766655 3332 99999999998886532 2366777766543
No 123
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=48.68 E-value=9.8 Score=38.25 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=38.4
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCC
Q 013553 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCN 68 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR 68 (441)
.+.|||-...+.+|+.-..|||.|=++-|...+.......||+=.
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 489999999999999888999999999999888765557788644
No 124
>PLN02195 cellulose synthase A
Probab=48.10 E-value=11 Score=44.26 Aligned_cols=46 Identities=22% Similarity=0.532 Sum_probs=33.6
Q ss_pred ccccccccccc-----cce-ecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 25 MTCPICNTLLR-----DAT-TISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~-----dPv-tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-.|.||.+.+- +|. .--+|+.-.|+.|. ++-+.++.-.||.|+...
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Y 58 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPY 58 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcc
Confidence 47999988431 221 11259999999997 666667889999999875
No 125
>PLN02400 cellulose synthase
Probab=46.38 E-value=10 Score=44.97 Aligned_cols=46 Identities=28% Similarity=0.779 Sum_probs=33.7
Q ss_pred cccccccccc-----cce-ecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553 26 TCPICNTLLR-----DAT-TISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 26 tCpIClelf~-----dPv-tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
+|.||.+-+- +|. .--+|+--.|+.|. ++-+.++.-.||.|+....
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCccc
Confidence 8999998732 111 11258888999997 5666678889999998753
No 126
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=46.07 E-value=24 Score=27.05 Aligned_cols=25 Identities=32% Similarity=0.890 Sum_probs=14.0
Q ss_pred CCCCcchHHHHHHhhccCCCCCCCCCC
Q 013553 42 ECLHTFCRKCIYDKISDEEIECCPVCN 68 (441)
Q Consensus 42 ~CgHtFC~~CI~~~l~~~~~~~CP~CR 68 (441)
.|.+.||.+|= .+..+..-.||-|.
T Consensus 26 ~C~~~FC~dCD--~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCD--VFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHH--HTTTTTS-SSSTT-
T ss_pred CCCCccccCcC--hhhhccccCCcCCC
Confidence 69999999993 23334556899884
No 127
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=45.38 E-value=12 Score=24.76 Aligned_cols=9 Identities=44% Similarity=1.125 Sum_probs=4.3
Q ss_pred ccccccccc
Q 013553 26 TCPICNTLL 34 (441)
Q Consensus 26 tCpIClelf 34 (441)
+||-|...+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 355554443
No 128
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.89 E-value=13 Score=38.08 Aligned_cols=30 Identities=23% Similarity=0.705 Sum_probs=22.6
Q ss_pred CCCcchHHHHHHhhccC-----------CCCCCCCCCccCC
Q 013553 43 CLHTFCRKCIYDKISDE-----------EIECCPVCNIDLG 72 (441)
Q Consensus 43 CgHtFC~~CI~~~l~~~-----------~~~~CP~CR~~l~ 72 (441)
|.-..|.+|+.+|+... +...||+||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 45556899998887642 4589999998863
No 129
>PRK04023 DNA polymerase II large subunit; Validated
Probab=43.56 E-value=19 Score=42.60 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=38.2
Q ss_pred ccccccccccccccceecCCCCC-----cchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013553 23 ACMTCPICNTLLRDATTISECLH-----TFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI 92 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~CgH-----tFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl 92 (441)
....|+-|........-- .||. .||..|-.. .....||.|...+.......+.....+..-.+.+
T Consensus 625 g~RfCpsCG~~t~~frCP-~CG~~Te~i~fCP~CG~~----~~~y~CPKCG~El~~~s~~~i~l~~~~~~A~~~l 694 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCP-FCGTHTEPVYRCPRCGIE----VEEDECEKCGREPTPYSKRKIDLKELYDRALENL 694 (1121)
T ss_pred cCccCCCCCCcCCcccCC-CCCCCCCcceeCccccCc----CCCCcCCCCCCCCCccceEEecHHHHHHHHHHHh
Confidence 357899998875332222 5885 499999332 2236799999887544444444444444333333
No 130
>PHA02862 5L protein; Provisional
Probab=42.14 E-value=22 Score=33.00 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=34.1
Q ss_pred ccccccccccccceecCCCCCc-----chHHHHHHhhccCCCCCCCCCCccC
Q 013553 25 MTCPICNTLLRDATTISECLHT-----FCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~dPvtLs~CgHt-----FC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-.|=||.+--.+.+ - +|..+ --..|+.+|+.......|+.|+..+
T Consensus 3 diCWIC~~~~~e~~-~-PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDERN-N-FCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCCc-c-cccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 46889988755443 2 56542 3689999999887889999999875
No 131
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=41.82 E-value=15 Score=43.55 Aligned_cols=47 Identities=26% Similarity=0.685 Sum_probs=33.8
Q ss_pred cccccccccccc-----cce-ecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 24 CMTCPICNTLLR-----DAT-TISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~-----dPv-tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.-.|.||.+-.- +|. .--+|+.-.|+.|. ++-+.++...||.|+...
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRY 67 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCch
Confidence 357999998632 111 11158888999998 566666889999999875
No 132
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=41.79 E-value=19 Score=41.63 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=37.3
Q ss_pred ccccccccccccccccceecC---CCCCcchHHHHHHhhccC-----CCCCCCCCCcc
Q 013553 21 IAACMTCPICNTLLRDATTIS---ECLHTFCRKCIYDKISDE-----EIECCPVCNID 70 (441)
Q Consensus 21 Lee~LtCpIClelf~dPvtLs---~CgHtFC~~CI~~~l~~~-----~~~~CP~CR~~ 70 (441)
-...+.|-||.+.+.--..+. .|-|.|-..||..|.... ....||.|..+
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 345688999999886333322 388999999999997652 35899999955
No 133
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=38.42 E-value=29 Score=29.03 Aligned_cols=47 Identities=26% Similarity=0.600 Sum_probs=19.2
Q ss_pred cccccccccccc-----cceec-CCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 24 CMTCPICNTLLR-----DATTI-SECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~-----dPvtL-s~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.-+|.||.+-+- ++... -+|+--.|+.|..--.. ++...||.|+..+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-eg~q~CpqCkt~y 61 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-EGNQVCPQCKTRY 61 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-TS-SB-TTT--B-
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-cCcccccccCCCc
Confidence 357999987542 12111 15888889999754443 5778999999764
No 134
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=38.36 E-value=33 Score=26.99 Aligned_cols=41 Identities=34% Similarity=0.813 Sum_probs=27.5
Q ss_pred ccccccccccc-cc--eecCCCCC--cchHHHHHHhhccCCCCCCCCCCccC
Q 013553 25 MTCPICNTLLR-DA--TTISECLH--TFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~-dP--vtLs~CgH--tFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-.|-.|..-|- +. ..| |.+ |||..|....+. ..||.|.-.|
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l~----~~CPNCgGel 51 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETMLN----GVCPNCGGEL 51 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHhc----CcCcCCCCcc
Confidence 35667766553 22 233 555 899999988764 4699998765
No 135
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=37.15 E-value=13 Score=36.57 Aligned_cols=43 Identities=23% Similarity=0.626 Sum_probs=33.6
Q ss_pred ccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCc
Q 013553 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNI 69 (441)
Q Consensus 25 LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~ 69 (441)
-.|.+|..+...-+.--.|+-.+-..|+..++.. ...||.|.-
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~--~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR--RDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc--cCcCCchhc
Confidence 4899999998877654456667788999999865 578999964
No 136
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=34.59 E-value=31 Score=30.39 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=43.0
Q ss_pred CCCCC-cceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhHHHH
Q 013553 348 LPQIS-SSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDL 405 (441)
Q Consensus 348 lpqi~-~~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~~~~ 405 (441)
+|.|. +.|| -.++++|.-++.+|-++|.|..+.-+-+.|.+....++.++.+|-|.
T Consensus 37 ~p~l~k~Kfl--Vp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~ 93 (112)
T cd01611 37 LPDLDKKKYL--VPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEE 93 (112)
T ss_pred cccccCceEE--ecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHH
Confidence 45555 4565 68999999999999999999999989999987544455556666553
No 137
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.58 E-value=53 Score=33.25 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=33.1
Q ss_pred ccccccccccccc----ccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013553 22 AACMTCPICNTLL----RDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf----~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
...|+|||-.-.| +-.+.. .|||.|-..-+.+.- ...|++|...+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~-~CGcV~SerAlKeik----as~C~~C~a~y~ 158 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALR-CCGCVFSERALKEIK----ASVCHVCGAAYQ 158 (293)
T ss_pred cceeecccccceecceEEEEEEe-ccceeccHHHHHHhh----hccccccCCccc
Confidence 4579999876544 333344 799999998876643 357999998864
No 138
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=33.83 E-value=23 Score=28.74 Aligned_cols=13 Identities=31% Similarity=0.874 Sum_probs=9.5
Q ss_pred cchHHHHHHhhcc
Q 013553 46 TFCRKCIYDKISD 58 (441)
Q Consensus 46 tFC~~CI~~~l~~ 58 (441)
.||+.|+..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999875
No 139
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.69 E-value=10 Score=38.94 Aligned_cols=47 Identities=30% Similarity=0.594 Sum_probs=38.3
Q ss_pred ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
..-+|-||..++.-|.....|+|-||..|...+..-. ..||.|+-..
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~--~~~~d~~~~~ 150 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMG--NDCPDCRGKI 150 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhhh--hccchhhcCc
Confidence 3567899999999999997899999999987776543 5699888553
No 140
>PF14353 CpXC: CpXC protein
Probab=30.72 E-value=38 Score=29.72 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=24.3
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhccC-CCCCCCCCCccC
Q 013553 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE-EIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~-~~~~CP~CR~~l 71 (441)
+++||-|...|.-.+-.+ ---..=..=....+... ..++||.|...+
T Consensus 1 ~itCP~C~~~~~~~v~~~-I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTS-INADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeE-EcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 378999988886555431 11111111112222111 237999999775
No 141
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=30.24 E-value=39 Score=30.69 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=23.5
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
..+.-...+.||-|...|. ..=........+.|.||.|...+
T Consensus 92 ~~e~~~~~Y~Cp~C~~~y~-------------~~ea~~~~d~~~~f~Cp~Cg~~l 133 (147)
T smart00531 92 EDETNNAYYKCPNCQSKYT-------------FLEANQLLDMDGTFTCPRCGEEL 133 (147)
T ss_pred hcccCCcEEECcCCCCEee-------------HHHHHHhcCCCCcEECCCCCCEE
Confidence 3444466788997765443 11111111123459999999876
No 142
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=30.19 E-value=27 Score=33.04 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=9.6
Q ss_pred CCCCCCCCccC
Q 013553 61 IECCPVCNIDL 71 (441)
Q Consensus 61 ~~~CP~CR~~l 71 (441)
.|.||.|...+
T Consensus 136 ~F~Cp~Cg~~L 146 (178)
T PRK06266 136 GFRCPQCGEML 146 (178)
T ss_pred CCcCCCCCCCC
Confidence 59999999876
No 143
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=29.88 E-value=33 Score=23.41 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=32.2
Q ss_pred CCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcc
Q 013553 361 RNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQL 399 (441)
Q Consensus 361 ~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l 399 (441)
...+|..++++|..+.| .+..++.|...|..+.....+
T Consensus 16 ~~~tv~~l~~~i~~~~~-~~~~~~~l~~~~~~~~~~~~~ 53 (69)
T cd00196 16 SGTTVADLKEKLAKKLG-LPPEQQRLLVNGKILPDSLTL 53 (69)
T ss_pred CCCcHHHHHHHHHHHHC-cChHHeEEEECCeECCCCCcH
Confidence 68999999999999999 577788888888888766654
No 144
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=29.87 E-value=29 Score=27.59 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=33.4
Q ss_pred CCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013553 360 DRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 360 d~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
++..+|.-||.+|..+.|+..|. .-+.+.|+++.-..+|.+
T Consensus 16 ~~~~TV~~lK~~I~~~~gi~~~~-q~Li~~G~~L~D~~~l~~ 56 (70)
T cd01794 16 SSKDTVGQLKKQLQAAEGVDPCC-QRWFFSGKLLTDKTRLQE 56 (70)
T ss_pred CCcChHHHHHHHHHHHhCCCHHH-eEEEECCeECCCCCCHHH
Confidence 45679999999999999987755 567899999887776643
No 145
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=29.52 E-value=31 Score=27.11 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=32.2
Q ss_pred CCCchHHHHHHHHHhhcCCC-ChhhHHHHhcCccccCCCcchh
Q 013553 360 DRNIPVSFIQKYLMMKLDLP-SESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 360 d~~~~~~~~~kyl~~kl~l~-~e~eve~~c~g~~~~~~~~l~~ 401 (441)
+.+.+|..|+..|..+.|+. ..++.-|.+.|++|.-..+|.+
T Consensus 18 ~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~ 60 (77)
T cd01805 18 DPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60 (77)
T ss_pred CCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHH
Confidence 35689999999999999982 3455678889998876665543
No 146
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=29.51 E-value=30 Score=26.83 Aligned_cols=40 Identities=10% Similarity=0.160 Sum_probs=31.5
Q ss_pred CCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcch
Q 013553 360 DRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLY 400 (441)
Q Consensus 360 d~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~ 400 (441)
+...+|..||+.|.++.|+..+ +.-|.+.|.++....+|.
T Consensus 18 ~~~~tV~~lK~~i~~~~g~~~~-~q~L~~~g~~L~d~~~L~ 57 (76)
T cd01803 18 EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLS 57 (76)
T ss_pred CCcCcHHHHHHHHHHHhCCCHH-HeEEEECCEECCCCCcHH
Confidence 3568999999999999998654 567778999877665543
No 147
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=28.95 E-value=24 Score=26.19 Aligned_cols=40 Identities=23% Similarity=0.508 Sum_probs=23.3
Q ss_pred cccccccccc--ceecCCCCCc-----chHHHHHHhhccCCCCCCCCC
Q 013553 27 CPICNTLLRD--ATTISECLHT-----FCRKCIYDKISDEEIECCPVC 67 (441)
Q Consensus 27 CpIClelf~d--PvtLs~CgHt-----FC~~CI~~~l~~~~~~~CP~C 67 (441)
|-||++--.+ |... +|.-. .-..|+..|+...+...|++|
T Consensus 1 CrIC~~~~~~~~~li~-pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLIS-PCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE--SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceec-ccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5677665432 3444 66543 257899999987667789887
No 148
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=28.32 E-value=27 Score=29.90 Aligned_cols=36 Identities=28% Similarity=0.832 Sum_probs=26.4
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.-.|-||..-+..+ ||.||..|-+.. -.|.+|...+
T Consensus 44 ~~~C~~CK~~v~q~------g~~YCq~CAYkk------GiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVHQP------GAKYCQTCAYKK------GICAMCGKKI 79 (90)
T ss_pred CccccccccccccC------CCccChhhhccc------CcccccCCee
Confidence 35788888766533 888999996532 3599999765
No 149
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=28.02 E-value=31 Score=29.21 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=32.9
Q ss_pred CCCCCcceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcC-ccccCCCcchhHHHHH
Q 013553 348 LPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMG-QPVIPTLQLYNLVDLW 406 (441)
Q Consensus 348 lpqi~~~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g-~~~~~~~~l~~~~~~w 406 (441)
.|+|-.+-..| +++-+++.|.+||.++|+|...+.|-+.+.. -.-.|..++.+|.+..
T Consensus 12 aPilk~~k~kI-~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f 70 (87)
T PF04110_consen 12 APILKQKKFKI-SASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCF 70 (87)
T ss_dssp ----S--EEEE-ETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH
T ss_pred CccccCcEEEE-CCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHh
Confidence 46666666666 5678999999999999999888888887743 2224455666666654
No 150
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.38 E-value=48 Score=30.49 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhcCCCChhhHHH
Q 013553 365 VSFIQKYLMMKLDLPSESEVEI 386 (441)
Q Consensus 365 ~~~~~kyl~~kl~l~~e~eve~ 386 (441)
-|+|..|+|+||++.|+.-||+
T Consensus 57 ~s~ie~~~v~~ld~es~Eg~el 78 (156)
T COG4077 57 YSSIEDYLVKKLDKESFEGVEL 78 (156)
T ss_pred HHHHHHhhHHHhCccCHHHHHH
Confidence 3789999999999999998876
No 151
>KOG2849 consensus Placental protein 11 [General function prediction only]
Probab=26.64 E-value=55 Score=34.61 Aligned_cols=61 Identities=26% Similarity=0.262 Sum_probs=41.5
Q ss_pred ceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhHHHHHhhcCCCCCcccccCCCCccceEEE
Q 013553 354 SYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWLQTASTSDRVPAMIGSSAKDFVMV 430 (441)
Q Consensus 354 ~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~s~~~~~vm~ 430 (441)
.|||--=+.+..+.++.||+.| +..+-+.-|. ..-|.++|+..=+ |-...+|||+-+||.+
T Consensus 208 ~Fl~~vm~t~vmk~l~~fl~~k-~~~s~~~~~f------------~~~L~~LWF~~Ys---Rg~g~~gSSgFEHVF~ 268 (388)
T KOG2849|consen 208 AFLDEVMTTRVMKELYRFLVHK-DVVSNSYNEF------------RRLLKELWFGLYS---RGKGPGGSSGFEHVFS 268 (388)
T ss_pred HHHHHHhhhHHHHHHHHHHHhc-CcCCCcHHHH------------HHHHHHhcceecc---cCCCCCCCccceEEEE
Confidence 4566556667777777777777 5433322222 3456668998865 7788999999999985
No 152
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.54 E-value=42 Score=38.15 Aligned_cols=45 Identities=24% Similarity=0.555 Sum_probs=34.9
Q ss_pred cccccccccccceecCCCCC-cchHHHHHHhhccCC----CCCCCCCCccC
Q 013553 26 TCPICNTLLRDATTISECLH-TFCRKCIYDKISDEE----IECCPVCNIDL 71 (441)
Q Consensus 26 tCpIClelf~dPvtLs~CgH-tFC~~CI~~~l~~~~----~~~CP~CR~~l 71 (441)
.|+||-.-+.-+..- .||| ..|..|..+...... ...||+|+..+
T Consensus 2 ~c~ic~~s~~~~~~~-s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRG-SCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccccccc-cccccccchhhhhhhhhhcccccccccCcccccce
Confidence 589998888777777 7999 899999976644333 46789999854
No 153
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=26.17 E-value=39 Score=26.64 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=35.1
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013553 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
|.| +...+|.-||.-|..+.|+.. ++.-|.+.|+++....+|.+
T Consensus 15 l~v-~~~~tV~~lK~~i~~~~gi~~-~~q~L~~~G~~L~d~~~L~~ 58 (74)
T cd01807 15 LQV-SEKESVSTLKKLVSEHLNVPE-EQQRLLFKGKALADDKRLSD 58 (74)
T ss_pred EEE-CCCCcHHHHHHHHHHHHCCCH-HHeEEEECCEECCCCCCHHH
Confidence 344 467899999999999999865 55677899999988776653
No 154
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.95 E-value=13 Score=37.17 Aligned_cols=45 Identities=27% Similarity=0.610 Sum_probs=33.8
Q ss_pred ccccccccccc------cceecCC-------CCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 25 MTCPICNTLLR------DATTISE-------CLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 25 LtCpIClelf~------dPvtLs~-------CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
-.|.||...+. .|..+.. |||+.|..|+...+.... ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~-~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG-IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh-hcCCcccce
Confidence 56888877664 4566622 999999999988766544 789999863
No 155
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=25.28 E-value=66 Score=37.43 Aligned_cols=46 Identities=9% Similarity=0.251 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhhcCCC----ChhhHHHHhcCccccCCCcchhHHH-HHhhc
Q 013553 364 PVSFIQKYLMMKLDLP----SESEVEIKCMGQPVIPTLQLYNLVD-LWLQT 409 (441)
Q Consensus 364 ~~~~~~kyl~~kl~l~----~e~eve~~c~g~~~~~~~~l~~~~~-~w~~~ 409 (441)
.++-||.+|-+-|+|. +..-.||.+.|+-|...|++++|-+ +|...
T Consensus 16 lmrdvknkIc~d~~m~~lleDd~gmELlV~~~IisldL~v~~Vy~~vW~~~ 66 (802)
T PF13764_consen 16 LMRDVKNKICRDLEMIALLEDDNGMELLVNNKIISLDLPVRDVYEKVWKPN 66 (802)
T ss_pred hHHHHHHHHhhhcccchhccCCcccceeecCeeecCCCcHHHHHHHHhccc
Confidence 4678999999999975 5778999999999999999999999 79754
No 156
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=25.19 E-value=39 Score=25.25 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=30.6
Q ss_pred CCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcc
Q 013553 360 DRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQL 399 (441)
Q Consensus 360 d~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l 399 (441)
+.+.+|.-+|++|....|+..+ .+-|.+.|+++....+|
T Consensus 15 ~~~~ti~~lK~~i~~~~~~~~~-~~~l~~~g~~l~d~~~l 53 (69)
T cd01769 15 SPDDTVAELKAKIAAKEGVPPE-QQRLIYAGKILKDDKTL 53 (69)
T ss_pred CCCChHHHHHHHHHHHHCcChH-HEEEEECCcCCCCcCCH
Confidence 4588999999999999997665 46778888876655554
No 157
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.87 E-value=36 Score=31.38 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=18.4
Q ss_pred ccccccccccccccccceecCCCCCcchHHHH
Q 013553 21 IAACMTCPICNTLLRDATTISECLHTFCRKCI 52 (441)
Q Consensus 21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI 52 (441)
..++-+|.||...-+.- .|||. |..|-
T Consensus 62 v~ddatC~IC~KTKFAD----G~GH~-C~YCq 88 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD----GCGHN-CSYCQ 88 (169)
T ss_pred cCcCcchhhhhhccccc----ccCcc-cchhh
Confidence 46789999998854322 58884 66664
No 158
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=24.51 E-value=40 Score=25.78 Aligned_cols=28 Identities=32% Similarity=0.863 Sum_probs=19.2
Q ss_pred CCC-CcchHHHHHHhhccCCCCCCCCCCccC
Q 013553 42 ECL-HTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 42 ~Cg-HtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.|. |-.|..|+...+.. ...||+|..++
T Consensus 17 ~C~dHYLCl~CLt~ml~~--s~~C~iC~~~L 45 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSR--SDRCPICGKPL 45 (50)
T ss_dssp E-SS-EEEHHHHHHT-SS--SSEETTTTEE-
T ss_pred eecchhHHHHHHHHHhcc--ccCCCcccCcC
Confidence 465 56799999888764 46899999875
No 159
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=24.22 E-value=40 Score=26.64 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=30.9
Q ss_pred CCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCC-Ccc
Q 013553 360 DRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPT-LQL 399 (441)
Q Consensus 360 d~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~-~~l 399 (441)
+..++|.-||.+|..+-|+..+. .-|.+.|.++.-. .+|
T Consensus 17 ~~~~TV~~lK~~I~~~~gip~~~-q~Li~~Gk~L~D~~~~L 56 (71)
T cd01796 17 DPDLELENFKALCEAESGIPASQ-QQLIYNGRELVDNKRLL 56 (71)
T ss_pred CCcCCHHHHHHHHHHHhCCCHHH-eEEEECCeEccCCcccH
Confidence 45799999999999999997755 4678999988543 344
No 160
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=23.57 E-value=44 Score=26.42 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=34.7
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcch
Q 013553 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLY 400 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~ 400 (441)
|.| +.+.+|.-||+.|..+.|+..+.+ -+.|.|+++....+|.
T Consensus 13 l~v-~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~G~~L~D~~tL~ 55 (74)
T cd01810 13 YEV-QLTQTVATLKQQVSQRERVQADQF-WLSFEGRPMEDEHPLG 55 (74)
T ss_pred EEE-CCcChHHHHHHHHHHHhCCCHHHe-EEEECCEECCCCCCHH
Confidence 455 567899999999999999876655 6779999988776664
No 161
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.56 E-value=77 Score=30.83 Aligned_cols=45 Identities=24% Similarity=0.462 Sum_probs=32.2
Q ss_pred ccccCCCCCCCCCcceeeeeCCCch-HHHHHHHHHhhcCCCChhhHHH
Q 013553 340 EDQRGSLPLPQISSSYLRIKDRNIP-VSFIQKYLMMKLDLPSESEVEI 386 (441)
Q Consensus 340 ~~q~~~~~lpqi~~~y~rikd~~~~-~~~~~kyl~~kl~l~~e~eve~ 386 (441)
.+++...|..|+|- |-|.+-.++ ...|-+||++|+||.-.++.|=
T Consensus 41 ~~~K~~~pfgqlP~--l~vDg~~i~QS~AI~RyLArk~gl~Gkt~~E~ 86 (206)
T KOG1695|consen 41 EELKDKMPFGQLPV--LEVDGKKLVQSRAILRYLARKFGLAGKTEEEE 86 (206)
T ss_pred hhhcccCCCCCCCE--EeECCEeeccHHHHHHHHHHHhCcCCCCHHHH
Confidence 34455578899984 444455554 5679999999999988777553
No 162
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=23.48 E-value=71 Score=27.80 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=42.6
Q ss_pred CCCCCcc-eeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhHHHHHh
Q 013553 348 LPQISSS-YLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLWL 407 (441)
Q Consensus 348 lpqi~~~-y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~~~~w~ 407 (441)
||.|-+. || -...|+|+-++..|-++|.|..+.-+-+.+.|.-+..+.++..|-+-+-
T Consensus 29 lp~ldk~KfL--vp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~k 87 (104)
T PF02991_consen 29 LPDLDKKKFL--VPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYK 87 (104)
T ss_dssp S---SSSEEE--EETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB
T ss_pred hhhcCccEEE--EcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhC
Confidence 7877654 66 4778999999999999999999999999999966666778888877653
No 163
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=23.29 E-value=43 Score=26.44 Aligned_cols=45 Identities=18% Similarity=0.079 Sum_probs=36.4
Q ss_pred eeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013553 355 YLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 355 y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
-|.+ +.+.+|.-||..|..+.|+..+. .-|.+.|+++....+|.+
T Consensus 12 ~l~v-~~~~tV~~lK~~i~~~~gip~~~-q~Li~~Gk~L~D~~tL~~ 56 (74)
T cd01793 12 TLEV-TGQETVSDIKAHVAGLEGIDVED-QVLLLAGVPLEDDATLGQ 56 (74)
T ss_pred EEEE-CCcCcHHHHHHHHHhhhCCCHHH-EEEEECCeECCCCCCHHH
Confidence 3455 67899999999999999986655 568899999888877754
No 164
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=22.90 E-value=59 Score=37.41 Aligned_cols=67 Identities=19% Similarity=0.408 Sum_probs=40.9
Q ss_pred ccccccccccccccccceecCCCCC----------cchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHH
Q 013553 21 IAACMTCPICNTLLRDATTISECLH----------TFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRA 90 (441)
Q Consensus 21 Lee~LtCpIClelf~dPvtLs~CgH----------tFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~ 90 (441)
....+.|.-|..++..| .|.. .+|..|-.. ..-...||.|....- ...-.--..+.+.+.
T Consensus 432 ys~~l~C~~Cg~v~~Cp----~Cd~~lt~H~~~~~L~CH~Cg~~---~~~p~~Cp~Cgs~~L---~~~G~GterieeeL~ 501 (730)
T COG1198 432 YAPLLLCRDCGYIAECP----NCDSPLTLHKATGQLRCHYCGYQ---EPIPQSCPECGSEHL---RAVGPGTERIEEELK 501 (730)
T ss_pred ccceeecccCCCcccCC----CCCcceEEecCCCeeEeCCCCCC---CCCCCCCCCCCCCee---EEecccHHHHHHHHH
Confidence 45578888888888777 4543 358889544 123478999986510 000112334667777
Q ss_pred HHcCCch
Q 013553 91 KIFPLKR 97 (441)
Q Consensus 91 kl~p~~~ 97 (441)
.+||..+
T Consensus 502 ~~FP~~r 508 (730)
T COG1198 502 RLFPGAR 508 (730)
T ss_pred HHCCCCc
Confidence 7887654
No 165
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.61 E-value=63 Score=31.19 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=31.4
Q ss_pred cccccccccccccce-------ecCCCCCcchHHHHHHhhccC----CC-----CCCCCCCccC
Q 013553 24 CMTCPICNTLLRDAT-------TISECLHTFCRKCIYDKISDE----EI-----ECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~dPv-------tLs~CgHtFC~~CI~~~l~~~----~~-----~~CP~CR~~l 71 (441)
..-|-||.-|--+-+ .+ .||..|-.-|+..|++.- +. -.||.|..++
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~-qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNI-QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hhcccceeeeecCCcccccccccc-ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 345666665543322 23 599999999999998742 11 4799998775
No 166
>PTZ00044 ubiquitin; Provisional
Probab=22.52 E-value=44 Score=26.21 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcch
Q 013553 361 RNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLY 400 (441)
Q Consensus 361 ~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~ 400 (441)
...+|.-||..|.++.|+..+. ..+.+.|+++....+|.
T Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~-q~L~~~g~~L~d~~~l~ 57 (76)
T PTZ00044 19 PDNTVQQVKMALQEKEGIDVKQ-IRLIYSGKQMSDDLKLS 57 (76)
T ss_pred CCCcHHHHHHHHHHHHCCCHHH-eEEEECCEEccCCCcHH
Confidence 5689999999999999986544 55669999987766654
No 167
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=22.22 E-value=94 Score=22.50 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=21.7
Q ss_pred eCCCchHHHHHHHHHhhcCCC--ChhhHHH
Q 013553 359 KDRNIPVSFIQKYLMMKLDLP--SESEVEI 386 (441)
Q Consensus 359 kd~~~~~~~~~kyl~~kl~l~--~e~eve~ 386 (441)
++|.|+..-++..| .++|+. ++.||+.
T Consensus 1 ~~G~i~~~~~~~~l-~~~g~~~~s~~e~~~ 29 (54)
T PF13833_consen 1 KDGKITREEFRRAL-SKLGIKDLSEEEVDR 29 (54)
T ss_dssp SSSEEEHHHHHHHH-HHTTSSSSCHHHHHH
T ss_pred CcCEECHHHHHHHH-HHhCCCCCCHHHHHH
Confidence 58999999999999 999877 5555554
No 168
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=22.15 E-value=37 Score=33.86 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=7.1
Q ss_pred CCCCCCCccC
Q 013553 62 ECCPVCNIDL 71 (441)
Q Consensus 62 ~~CP~CR~~l 71 (441)
..||.|...+
T Consensus 275 ~~C~~C~skF 284 (296)
T COG5242 275 PVCKKCKSKF 284 (296)
T ss_pred CcCccccccc
Confidence 4688887665
No 169
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.14 E-value=18 Score=36.31 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=21.5
Q ss_pred ccccccccccccccceecCC----CCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013553 23 ACMTCPICNTLLRDATTISE----CLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~----CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
..-.||||...-.-.+.... --|-+|.-|-..|-- ....||.|...
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~--~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF--VRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE----TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee--cCCCCcCCCCC
Confidence 34699999997655544422 134579999887754 33679999854
No 170
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.59 E-value=59 Score=24.14 Aligned_cols=32 Identities=25% Similarity=0.621 Sum_probs=20.0
Q ss_pred ccccccccccc---cceecCCCCCcchHHHHHHhh
Q 013553 25 MTCPICNTLLR---DATTISECLHTFCRKCIYDKI 56 (441)
Q Consensus 25 LtCpIClelf~---dPvtLs~CgHtFC~~CI~~~l 56 (441)
-.|.+|..-|. ....-..||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 35777765443 222222599999999985443
No 171
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=20.28 E-value=60 Score=29.21 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=37.7
Q ss_pred CCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhHHHHH
Q 013553 360 DRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLW 406 (441)
Q Consensus 360 d~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~~~~w 406 (441)
.+.|+|.-++..|-++|+|.+|. +-+.|.+-....+.++.+|-|-.
T Consensus 48 P~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~lYe~~ 93 (121)
T PTZ00380 48 PRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDIADAC 93 (121)
T ss_pred CCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHHHHHHh
Confidence 56799999999999999999999 99999885555566777776643
No 172
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=20.15 E-value=45 Score=30.88 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=9.5
Q ss_pred CCCCCCCCccC
Q 013553 61 IECCPVCNIDL 71 (441)
Q Consensus 61 ~~~CP~CR~~l 71 (441)
.|.||.|...+
T Consensus 128 ~F~Cp~Cg~~L 138 (158)
T TIGR00373 128 NFTCPRCGAML 138 (158)
T ss_pred CCcCCCCCCEe
Confidence 48999999876
No 173
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=20.05 E-value=61 Score=24.81 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=33.2
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013553 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
+++ +...+|+-|++-|.++.|+..+ ...|.+.|+++....+|.+
T Consensus 15 ~~v-~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~g~~L~d~~~L~~ 58 (72)
T cd01809 15 FTV-EEEITVLDLKEKIAEEVGIPVE-QQRLIYSGRVLKDDETLSE 58 (72)
T ss_pred EEE-CCCCcHHHHHHHHHHHHCcCHH-HeEEEECCEECCCcCcHHH
Confidence 444 4568999999999999998544 5678889988776655543
Done!