BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013554
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5L0Q3|RNC_GEOKA Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) GN=rnc
PE=3 SV=1
Length = 246
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + + RL FLG VLEL ++ Q++P S + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ A S L+ + + R + VF A GA+YL G V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151
Query: 283 YRVL 286
R L
Sbjct: 152 IRFL 155
>sp|A9VT87|RNC_BACWK Ribonuclease 3 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rnc
PE=3 SV=1
Length = 245
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGYLKEV 159
>sp|Q819V8|RNC_BACCR Ribonuclease 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=rnc PE=3 SV=1
Length = 245
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WEFLKEI 159
>sp|B7HDX2|RNC_BACC4 Ribonuclease 3 OS=Bacillus cereus (strain B4264) GN=rnc PE=3 SV=1
Length = 245
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WEFLKEI 159
>sp|B7IUK8|RNC_BACC2 Ribonuclease 3 OS=Bacillus cereus (strain G9842) GN=rnc PE=3 SV=1
Length = 245
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WEFLKEI 159
>sp|Q5GTI3|RNC_WOLTR Ribonuclease 3 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS)
GN=rnc PE=3 SV=1
Length = 243
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
D +L A HP + +++ + RL FLG +L + + +P+E + R
Sbjct: 29 DAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRLFPKEKEGALARRK 88
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKERE-PPVKSVFWALFGAIYLCFGFPE 281
L+ + K L N I + +R +R +++ AL GAIY+ GF
Sbjct: 89 TDLVCGNTIANVAKEIKLGNFII-MNNSERCNGGKRNLKNLENALEALIGAIYIDGGFAN 147
Query: 282 VYR 284
V +
Sbjct: 148 VKK 150
>sp|Q7UGZ7|RNC_RHOBA Ribonuclease 3 OS=Rhodopirellula baltica (strain SH1) GN=rnc PE=3
SV=2
Length = 266
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H + A H A + RL FLG VL L CE+ YP S + +
Sbjct: 50 LLRSALTHA----SGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLTKIKSA 105
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP---VKSVFWALFGAIYLCFGFPE 281
++ RR+ K L + + R + + R P V VF A+ A+Y+ G PE
Sbjct: 106 VVSRRSCGKVACKLGLDQCLI----VGRGVTRNRSYPKSLVSDVFEAVIAALYI-DGGPE 160
Query: 282 VYR 284
+ R
Sbjct: 161 IVR 163
>sp|Q6HEW6|RNC_BACHK Ribonuclease 3 OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=rnc PE=3 SV=1
Length = 245
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|C1EP73|RNC_BACC3 Ribonuclease 3 OS=Bacillus cereus (strain 03BB102) GN=rnc PE=3 SV=1
Length = 245
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|B7JJT6|RNC_BACC0 Ribonuclease 3 OS=Bacillus cereus (strain AH820) GN=rnc PE=3 SV=1
Length = 245
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|Q81WI8|RNC_BACAN Ribonuclease 3 OS=Bacillus anthracis GN=rnc PE=3 SV=1
Length = 245
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|C3L778|RNC_BACAC Ribonuclease 3 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495)
GN=rnc PE=3 SV=1
Length = 245
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|C3P5Q0|RNC_BACAA Ribonuclease 3 OS=Bacillus anthracis (strain A0248) GN=rnc PE=3
SV=1
Length = 245
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|B9IVD8|RNC_BACCQ Ribonuclease 3 OS=Bacillus cereus (strain Q1) GN=rnc PE=3 SV=1
Length = 245
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|B7HLI2|RNC_BACC7 Ribonuclease 3 OS=Bacillus cereus (strain AH187) GN=rnc PE=3 SV=1
Length = 245
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|Q732M1|RNC_BACC1 Ribonuclease 3 OS=Bacillus cereus (strain ATCC 10987) GN=rnc PE=3
SV=1
Length = 245
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|Q636H7|RNC_BACCZ Ribonuclease 3 OS=Bacillus cereus (strain ZK / E33L) GN=rnc PE=3
SV=1
Length = 245
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGGLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|A7GRH9|RNC_BACCN Ribonuclease 3 OS=Bacillus cereus subsp. cytotoxis (strain NVH
391-98) GN=rnc PE=3 SV=1
Length = 245
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLDTV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>sp|Q03K17|RNC_STRTD Ribonuclease 3 OS=Streptococcus thermophilus (strain ATCC BAA-491 /
LMD-9) GN=rnc PE=3 SV=1
Length = 229
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + RYP + M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 80 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 139
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 140 KFLNQVM 146
>sp|C0MCR4|RNC_STRS7 Ribonuclease 3 OS=Streptococcus equi subsp. zooepidemicus (strain
H70) GN=rnc PE=3 SV=1
Length = 230
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKQTEGDMSKLRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + + S I ++ + R+ + +F A GA+ L G EV
Sbjct: 80 TIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDTILGDLFEAFLGALLLDKGIEEVR 139
Query: 284 RVLFEVF 290
R L +V
Sbjct: 140 RFLNQVM 146
>sp|Q5M3S3|RNC_STRT2 Ribonuclease 3 OS=Streptococcus thermophilus (strain ATCC BAA-250 /
LMG 18311) GN=rnc PE=3 SV=1
Length = 237
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + RYP + M +
Sbjct: 29 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRS 87
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 88 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 147
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 148 KFLNQVM 154
>sp|Q5LZ68|RNC_STRT1 Ribonuclease 3 OS=Streptococcus thermophilus (strain CNRZ 1066)
GN=rnc PE=3 SV=1
Length = 237
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + RYP + M +
Sbjct: 29 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRS 87
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 88 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 147
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 148 KFLNQVM 154
>sp|A4IM67|RNC_GEOTN Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=rnc PE=3 SV=1
Length = 246
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + RL FLG VLEL ++ Q++P S + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ A S L+ + + R + VF A GA+YL G V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDVV 151
Query: 283 YRVL 286
R L
Sbjct: 152 LRFL 155
>sp|Q7M840|RNC_WOLSU Ribonuclease 3 OS=Wolinella succinogenes (strain ATCC 29543 / DSM
1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=rnc PE=3
SV=1
Length = 238
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VL+L EF ++P+ + + L+ + K + SL IF
Sbjct: 36 NERLEFLGDAVLDLVIGEFLFLKFPKADEGELSKMRASLVNEKGFAKLAERVSLGRHIFI 95
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP----EVYRVLFEVF 290
+ + +E+ + + F A GAIYL G V+R+L EV+
Sbjct: 96 SNAEENNKGREKPSLLSNAFEATMGAIYLETGLSVVREVVHRLLDEVY 143
>sp|C0M8Y3|RNC_STRE4 Ribonuclease 3 OS=Streptococcus equi subsp. equi (strain 4047)
GN=rnc PE=3 SV=1
Length = 230
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKQTEGDMSKLRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + + S I ++ + R+ + +F A GA+ L G EV
Sbjct: 80 TIVREESLAGFSRYCSFDAYIKLGRGEEKSGGRHRDTILGDLFEAFLGALLLDKGIEEVR 139
Query: 284 RVLFEVF 290
R L +V
Sbjct: 140 RFLNQVM 146
>sp|B9DRH1|RNC_STRU0 Ribonuclease 3 OS=Streptococcus uberis (strain ATCC BAA-854 /
0140J) GN=rnc PE=3 SV=1
Length = 230
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ ++YP ++ + ++
Sbjct: 20 TLLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFKKYPHKAEGELSKQR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + + + I ++ + R+ + +F A GA+ L G EV
Sbjct: 79 SMIVREESLASFSRHCAFEPYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEEV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLNQVM 146
>sp|B1N016|RNC_LEUCK Ribonuclease 3 OS=Leuconostoc citreum (strain KM20) GN=rnc PE=3
SV=1
Length = 233
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 18/173 (10%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V++++ E+ +RYP + E ++ R+ + + A L I
Sbjct: 45 YQRLEFLGDSVMQVSVAEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVAHLNEGIRL 104
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR----VLFEVFGMDPEDK--ECQ 300
+ ++R+ ++ ++ A GA+YL GF V + LF D D+ + +
Sbjct: 105 GKGEEMSGARDRDSLLEDIWEAFIGALYLDQGFEAVRKFLDQTLFAAVDTDFFDRFIDFK 164
Query: 301 PKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMH 353
+L+ +L+ V +++ E L +LF A V H
Sbjct: 165 SRLQEKLQKNGAVDIDYR------------TENEQQLSHNAQLFEASVSVDDH 205
>sp|B1LCY9|RNC_THESQ Ribonuclease 3 OS=Thermotoga sp. (strain RQ2) GN=rnc PE=3 SV=1
Length = 240
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 163 DTLLYLAFQHP--FCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
+ LL+ A H E+N+A R + +L FLG VLEL CE ++YP
Sbjct: 23 EELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLA 82
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
R A E V L+ R+ NL K+ +F ++ ++R+ + F AL
Sbjct: 83 RVKSAAASEEVLALVSRKMNLGKF---------LFLGKGEEKTGGRDRDSILADAFEALL 133
Query: 271 GAIYLCFGFPEVYRVLFE 288
AIYL G+ ++ + LFE
Sbjct: 134 AAIYLDQGYEKI-KELFE 150
>sp|A4J683|RNC_DESRM Ribonuclease 3 OS=Desulfotomaculum reducens (strain MI-1) GN=rnc
PE=3 SV=1
Length = 246
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRE 220
H TLL A H C H + RL FLG VLEL E + +P + + +
Sbjct: 20 HNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKMFPDRTEGELTK 79
Query: 221 RVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
+ +L K + L + +R +ER + F AL GAIYL G
Sbjct: 80 MRASSVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAFEALLGAIYLDQGL- 138
Query: 281 EVYR 284
E+ R
Sbjct: 139 EISR 142
>sp|B5XKB7|RNC_STRPZ Ribonuclease 3 OS=Streptococcus pyogenes serotype M49 (strain
NZ131) GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|A2RFW8|RNC_STRPG Ribonuclease 3 OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|Q5XDA6|RNC_STRP6 Ribonuclease 3 OS=Streptococcus pyogenes serotype M6 (strain ATCC
BAA-946 / MGAS10394) GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|P0DF15|RNC_STRPQ Ribonuclease 3 OS=Streptococcus pyogenes serotype M3 (strain SSI-1)
GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|Q1J7V3|RNC_STRPF Ribonuclease 3 OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|Q1JI19|RNC_STRPD Ribonuclease 3 OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|Q1JMX4|RNC_STRPC Ribonuclease 3 OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|Q1JCZ9|RNC_STRPB Ribonuclease 3 OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|P66672|RNC_STRP8 Ribonuclease 3 OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|P0DF14|RNC_STRP3 Ribonuclease 3 OS=Streptococcus pyogenes serotype M3 (strain ATCC
BAA-595 / MGAS315) GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|P66670|RNC_STRP1 Ribonuclease 3 OS=Streptococcus pyogenes serotype M1 GN=rnc PE=1
SV=1
Length = 230
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|Q48UR6|RNC_STRPM Ribonuclease 3 OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=rnc PE=3 SV=1
Length = 230
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>sp|Q9X0I6|RNC_THEMA Ribonuclease 3 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rnc PE=1 SV=1
Length = 240
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 163 DTLLYLAFQHP--FCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
+ LL+ A H E+N+A R + +L FLG VLEL CE ++YP
Sbjct: 23 EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLA 82
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
R A E V ++ R+ NL K+ +F ++ ++R+ + F AL
Sbjct: 83 RVKSAAASEEVLAMVSRKMNLGKF---------LFLGKGEEKTGGRDRDSILADAFEALL 133
Query: 271 GAIYLCFGFPEVYRVLFE 288
AIYL G+ ++ + LFE
Sbjct: 134 AAIYLDQGYEKI-KELFE 150
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + RL FLG VLEL ++ +++P S + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRRRPHEDNERLEFLGDAVLELTVSQYLFKKFPHMSEGELTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ A S L+ + + R + VF A GA+YL G V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151
Query: 283 YRVL 286
+ L
Sbjct: 152 MQFL 155
>sp|A5IN74|RNC_THEP1 Ribonuclease 3 OS=Thermotoga petrophila (strain RKU-1 / ATCC
BAA-488 / DSM 13995) GN=rnc PE=3 SV=1
Length = 240
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 21/132 (15%)
Query: 163 DTLLYLAFQHP--FCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
+ LL+ A H E+N+A R + +L FLG VLEL CE ++YP
Sbjct: 23 EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLA 82
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
R A E V ++ R NL K+ +F ++ ++R+ + F AL
Sbjct: 83 RAKSAAASEEVLAMVSRELNLGKF---------LFLGKGEEKTGGRDRDSILADAFEALL 133
Query: 271 GAIYLCFGFPEV 282
AIYL G+ ++
Sbjct: 134 AAIYLDQGYHKI 145
>sp|A8AWC2|RNC_STRGC Ribonuclease 3 OS=Streptococcus gordonii (strain Challis / ATCC
35105 / CH1 / DL1 / V288) GN=rnc PE=3 SV=1
Length = 232
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+LL AF H N+ R ++ H+ RL FLG VL+L E+ ++YP+ + +
Sbjct: 20 SLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLFEKYPKRPEGDLTKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + I ++ +ERE + +F A GA+ L G V
Sbjct: 79 STIVREESLAGFSRDCQFDRFIKLGKGEEKSGGRERETILGDLFEAFLGALLLDKGLEVV 138
Query: 283 YRVLFEVF 290
+++V
Sbjct: 139 KNFIYQVM 146
>sp|B2A2N1|RNC_NATTJ Ribonuclease 3 OS=Natranaerobius thermophilus (strain ATCC BAA-1301
/ DSM 18059 / JW/NM-WN-LF) GN=rnc PE=3 SV=1
Length = 230
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
D LL A H ++ + V + RL FLG VLELA E ++YP + +
Sbjct: 21 DKLLLQAVTHT-SYAHEQKDVVDHNERLEFLGDAVLELAISETLYKKYPELPEGELTKLR 79
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
L+ +L K + L + D ++R + AL GA+YL + +
Sbjct: 80 AELVCELSLVKIAEKLDLGKYLRLGKGEDSTGGRDRRSTLADTVEALIGAVYLQTNYDQT 139
Query: 283 YRVLFEVF 290
+++ ++F
Sbjct: 140 KQLILDLF 147
>sp|B3R075|RNC_PHYMT Ribonuclease 3 OS=Phytoplasma mali (strain AT) GN=rnc PE=3 SV=1
Length = 225
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 164 TLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+L ++ H + NK + + + RL FLG V+ L ++ + +E+ M ++
Sbjct: 17 SLYKMSITHSSYANENKLK--KKDNERLEFLGDAVINLLMADYLYTKKEKENEGFMSKKR 74
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKS-----VFWALFGAIYLCF 277
+ +L + K+ LQN I L + E+ + + F ALFGAIYL
Sbjct: 75 AQSVCEDSLVIYAKSIQLQNYIL-------LGKGEKNKNINNSILANAFEALFGAIYLDL 127
Query: 278 GFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDY 312
G+ +V + P+L ++++D+
Sbjct: 128 GYYIAKKVFILI---------VIPRLSNIIDNIDF 153
>sp|A7Z4L3|RNC_BACA2 Ribonuclease 3 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rnc
PE=3 SV=1
Length = 249
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEVYRVL 286
V + L
Sbjct: 150 LDPVQQFL 157
>sp|Q6MLR5|RNC_BDEBA Ribonuclease 3 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 /
DSM 50701 / NCIB 9529 / HD100) GN=rnc PE=3 SV=1
Length = 234
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 157 NPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPA 216
NPA L + +F + RN H + +L FLG VL+L EF +++P ++
Sbjct: 19 NPALLERALTHKSFANEL--RNTVEH----NEKLEFLGDAVLDLVVGEFLYEKFPTDTEG 72
Query: 217 PMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP-VKSVFWALFGAIYL 275
+ ++ ++ L + L N + + + L ++P + S F A+ GA+YL
Sbjct: 73 GLSKKRASIVNEEVLSELALEMGL-NKLMQLGKGEALTGGAQKPRLIASSFEAIVGALYL 131
Query: 276 CFGFPEVYR 284
GF EV R
Sbjct: 132 DGGF-EVAR 139
>sp|B7GGE9|RNC_ANOFW Ribonuclease 3 OS=Anoxybacillus flavithermus (strain DSM 21510 /
WK1) GN=rnc PE=3 SV=1
Length = 238
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + + RL FLG VLEL ++ +++P+ S + +
Sbjct: 24 EKLLIQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLELTVSQYLFEQFPQMSEGELTKMR 83
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + A S +L+ + + R + VF A GA+YL G V
Sbjct: 84 AAIVCEPSLVTFAHALSFGDLVLLGKGEELTGGRMRPSLLADVFEAFIGALYLDQGIEAV 143
Query: 283 YRVL 286
+ L
Sbjct: 144 VQFL 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,474,250
Number of Sequences: 539616
Number of extensions: 7427323
Number of successful extensions: 15913
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 15795
Number of HSP's gapped (non-prelim): 222
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)