Query 013554
Match_columns 441
No_of_seqs 376 out of 1594
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:01:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0571 Rnc dsRNA-specific rib 100.0 6.2E-42 1.3E-46 330.9 16.8 186 134-352 6-203 (235)
2 PRK12371 ribonuclease III; Rev 100.0 9.9E-40 2.1E-44 316.4 17.5 184 134-352 10-203 (235)
3 PRK14718 ribonuclease III; Pro 100.0 5E-39 1.1E-43 330.1 16.2 178 136-351 3-192 (467)
4 PRK12372 ribonuclease III; Rev 100.0 1.1E-38 2.5E-43 325.8 16.4 177 136-350 3-191 (413)
5 PRK00102 rnc ribonuclease III; 100.0 4E-35 8.6E-40 281.2 16.5 170 135-319 4-185 (229)
6 TIGR02191 RNaseIII ribonucleas 100.0 3.1E-34 6.7E-39 273.0 15.1 167 139-319 1-179 (220)
7 PF14622 Ribonucleas_3_3: Ribo 100.0 2.5E-31 5.5E-36 234.9 9.9 125 163-292 2-126 (128)
8 smart00535 RIBOc Ribonuclease 100.0 7.6E-29 1.6E-33 216.9 12.1 126 165-295 2-127 (129)
9 cd00593 RIBOc RIBOc. Ribonucle 100.0 5.4E-28 1.2E-32 211.7 11.6 127 165-294 2-128 (133)
10 KOG1817 Ribonuclease [RNA proc 99.9 8.6E-27 1.9E-31 236.6 11.4 168 136-319 275-460 (533)
11 PF00636 Ribonuclease_3: Ribon 99.9 9.2E-24 2E-28 181.4 6.9 91 188-278 1-114 (114)
12 KOG1817 Ribonuclease [RNA proc 99.9 1.4E-23 3E-28 213.4 8.6 235 134-435 41-330 (533)
13 KOG0701 dsRNA-specific nucleas 99.9 2.1E-22 4.5E-27 232.1 11.7 223 137-434 982-1267(1606)
14 KOG0701 dsRNA-specific nucleas 99.6 7.6E-17 1.6E-21 186.7 5.1 209 136-435 1213-1425(1606)
15 KOG3769 Ribonuclease III domai 99.4 2.1E-12 4.5E-17 127.4 11.5 171 135-320 64-260 (333)
16 COG0571 Rnc dsRNA-specific rib 99.3 1.6E-12 3.5E-17 126.4 2.2 55 365-435 8-63 (235)
17 PRK12371 ribonuclease III; Rev 99.2 2.2E-12 4.8E-17 125.6 2.5 53 365-434 12-64 (235)
18 PRK00102 rnc ribonuclease III; 99.2 3.5E-12 7.6E-17 122.5 2.4 56 365-435 5-60 (229)
19 PF14622 Ribonucleas_3_3: Ribo 98.8 5.7E-10 1.2E-14 98.7 -2.4 37 396-435 5-41 (128)
20 smart00535 RIBOc Ribonuclease 98.6 9.5E-09 2.1E-13 89.8 1.6 36 396-435 3-38 (129)
21 cd00593 RIBOc RIBOc. Ribonucle 98.6 1.3E-08 2.8E-13 89.0 1.9 37 397-435 4-40 (133)
22 TIGR02191 RNaseIII ribonucleas 98.1 1E-06 2.2E-11 84.0 2.0 53 368-434 1-53 (220)
23 COG1939 Ribonuclease III famil 97.9 6.4E-05 1.4E-09 66.6 8.6 101 187-290 15-127 (132)
24 PRK12372 ribonuclease III; Rev 93.5 0.026 5.6E-07 59.4 0.6 52 366-434 4-57 (413)
25 PRK14718 ribonuclease III; Pro 92.7 0.04 8.7E-07 58.5 0.6 52 366-434 4-57 (467)
26 PF11469 Ribonucleas_3_2: Ribo 88.3 2.1 4.5E-05 37.2 7.0 87 189-294 2-92 (120)
27 PHA02701 ORF020 dsRNA-binding 86.1 0.81 1.8E-05 43.4 3.7 41 293-351 107-148 (183)
28 PHA03103 double-strand RNA-bin 72.6 4.6 0.0001 38.4 4.0 39 295-352 110-149 (183)
29 smart00358 DSRM Double-strande 58.6 14 0.0003 27.7 3.5 23 297-319 2-25 (67)
30 cd00048 DSRM Double-stranded R 49.1 21 0.00046 26.5 3.2 23 297-319 3-27 (68)
31 PF14709 DND1_DSRM: double str 40.7 39 0.00084 27.6 3.7 21 299-319 7-28 (80)
32 PRK02287 hypothetical protein; 39.8 30 0.00066 32.6 3.3 27 263-289 107-133 (171)
33 PF08383 Maf_N: Maf N-terminal 32.8 18 0.00039 25.4 0.4 13 260-272 23-35 (35)
34 COG2158 Uncharacterized protei 28.5 20 0.00044 31.2 0.2 16 420-439 29-44 (112)
35 COG2042 Uncharacterized conser 27.7 62 0.0013 30.6 3.2 27 263-289 115-141 (179)
36 KOG3732 Staufen and related do 27.0 61 0.0013 33.7 3.3 43 299-359 148-191 (339)
37 PF04034 DUF367: Domain of unk 26.8 63 0.0014 29.1 3.0 27 263-289 66-92 (127)
No 1
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=100.00 E-value=6.2e-42 Score=330.89 Aligned_cols=186 Identities=26% Similarity=0.349 Sum_probs=170.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013554 134 EYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (441)
Q Consensus 134 ~~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~ 213 (441)
..+..+++.+||+|+| ++||.+||||+||.+++. ...|||||||||||||+++|+++||++||+.
T Consensus 6 ~~~~~l~~~lg~~f~~-------------~~lL~~AltH~S~~~e~~--~~~~nERLEFLGDavL~l~vae~Lf~~yP~~ 70 (235)
T COG0571 6 KKLEALEKKLGYTFKD-------------KELLEQALTHRSYANEHK--AVENNERLEFLGDAVLGLVVAEYLFKKYPNL 70 (235)
T ss_pred HHHHHHHHHhCCCcCC-------------HHHHHHHhcCcchhcccc--CCcchHHHHhhHHHHHHHHHHHHHHHHCCCC
Confidence 3567899999999999 899999999999998642 4679999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCC
Q 013554 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD 293 (441)
Q Consensus 214 ~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~ 293 (441)
+||+||++|+.+||+.+|+.+|+.+||++||+.++++...+++.+++++||+|||+|||||+|+|++.|++|+.++|.+.
T Consensus 71 ~EG~Ls~~ra~lV~~~~La~ia~~l~l~~~l~lg~ge~~~gg~~~~silaD~~EAligAiylD~g~~~~~~~i~~l~~~~ 150 (235)
T COG0571 71 PEGELSKLRAALVSEESLAEIARELGLGDYLRLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLFLPR 150 (235)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCccchhhccCChhhcCCCCchhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CC----------CCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 294 PE----------DKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 294 i~----------~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
++ .|+ ||||+|++ +..|.|+++..+|+ +|.+.|.+.|..+.
T Consensus 151 ~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~------------------~h~~~F~v~v~v~~ 203 (235)
T COG0571 151 LEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGP------------------AHDKEFTVEVAVGG 203 (235)
T ss_pred HhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCC------------------CCCceEEEEEEECC
Confidence 33 378 99999999 99999999999883 78889988775544
No 2
>PRK12371 ribonuclease III; Reviewed
Probab=100.00 E-value=9.9e-40 Score=316.43 Aligned_cols=184 Identities=20% Similarity=0.177 Sum_probs=163.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013554 134 EYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (441)
Q Consensus 134 ~~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~ 213 (441)
+.+..++++|||+|+| +.||.+||||+|+.+. ...||||||||||+||+++|+++||.+||++
T Consensus 10 ~~~~~le~~lgy~F~~-------------~~Ll~~AlTH~S~~~~----~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~ 72 (235)
T PRK12371 10 ATASILEERTGHRFAN-------------KERLERALTHSSARAS----KQGNYERLEFLGDRVLGLCVAEMLFEAFPDA 72 (235)
T ss_pred HHHHHHHHHHCCCCCC-------------HHHHHHHHcCcCcccC----CccchHhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4567899999999998 8999999999999763 2358999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCC
Q 013554 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD 293 (441)
Q Consensus 214 ~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~ 293 (441)
+||+||.+|+.+|||++|+.+|.++||++||+.+.+....+++..++++||+|||+|||||+|+|++.|++|+.++|.+.
T Consensus 73 ~eG~Lt~~rs~lV~n~~La~ia~~lgL~~~i~~~~~~~~~~~~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~~~~~ 152 (235)
T PRK12371 73 SEGELSVRLNQLVNAETCAAIADEIGLHDLIRTGSDVKKLTGKRLLNVRADVVEALIAAIYLDGGLEAARPFIQRYWQKR 152 (235)
T ss_pred CHHHHHHHHHHHhChHHHHHHHHHCCcHHHhccCcchhhcCCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766555566689999999999999999999999999999998532
Q ss_pred C--------CCCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 294 P--------EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 294 i--------~~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
+ +.|+ ||||+|++ +..|.|++++.+|+ +|.+.|.+.|..+.
T Consensus 153 ~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp------------------~h~~~F~v~v~v~~ 203 (235)
T PRK12371 153 ALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGP------------------DHDPRFTVEVEVKG 203 (235)
T ss_pred HhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecC------------------CCCCeEEEEEEECC
Confidence 2 3378 99999987 88899999998883 68888988875543
No 3
>PRK14718 ribonuclease III; Provisional
Probab=100.00 E-value=5e-39 Score=330.11 Aligned_cols=178 Identities=21% Similarity=0.241 Sum_probs=160.1
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 013554 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (441)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~e 215 (441)
+..|+++|||+|+| +.||.+||||+||.+ .||||||||||+||+++|+++||++||+++|
T Consensus 3 l~~LEkrLGY~Fkn-------------~~LL~eALTH~Sys~-------e~NERLEFLGDAVL~liVse~Lf~~fPdl~E 62 (467)
T PRK14718 3 LSQLESRLRYEFRN-------------AELLRQALTHRSHSA-------THNERLEFLGDSVLNCAVAALLFQRFGKLDE 62 (467)
T ss_pred HHHHHHHhCCCcCC-------------HHHHHHHHhccCcCc-------ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35689999999998 899999999999865 4899999999999999999999999999999
Q ss_pred hhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCC--
Q 013554 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD-- 293 (441)
Q Consensus 216 G~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~-- 293 (441)
|+||.+|+.+|||.+|+.+|+++||++||+.+.++...+++.++++++|+|||||||||+|+|++.++.||.++|.+.
T Consensus 63 GeLT~LRS~LVSnetLA~IAr~LGL~d~Lrlg~gE~~sgG~~~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll~p~i~ 142 (467)
T PRK14718 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILD 142 (467)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHcCchHHHhhCCcccccCCCCChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998877666667899999999999999999999999999999987532
Q ss_pred --------CCCCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 294 --------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 294 --------i~~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
.+.|+ ||||+|++ ...|.|++++++|+ +|.+.|.+.|..+
T Consensus 143 ~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGP------------------dH~k~F~V~V~v~ 192 (467)
T PRK14718 143 HIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA------------------AHNQQFEVECTVP 192 (467)
T ss_pred hhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecC------------------CCCCeEEEEEEEC
Confidence 13378 99999999 77899999999993 7788888777543
No 4
>PRK12372 ribonuclease III; Reviewed
Probab=100.00 E-value=1.1e-38 Score=325.79 Aligned_cols=177 Identities=21% Similarity=0.243 Sum_probs=159.0
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 013554 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (441)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~e 215 (441)
+..|+++|||+|+| +.||.+||||+||.+ .+|||||||||+||+++|+++||++||+++|
T Consensus 3 l~~LEk~LGY~Fkn-------------~~LL~eALTH~Sy~~-------~~NERLEFLGDAVL~liVse~Lf~~fP~~~E 62 (413)
T PRK12372 3 LSQLESRLRYEFRN-------------AELLRQALTHRSHSA-------THNERLEFLGDSVLNCAVAALLFQRFGKLDE 62 (413)
T ss_pred HHHHHHHhCCCcCC-------------HHHHHHHHhcccccc-------ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 35689999999998 899999999999864 4899999999999999999999999999999
Q ss_pred hhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCC--
Q 013554 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD-- 293 (441)
Q Consensus 216 G~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~-- 293 (441)
|+||.+|+.+|||.+|+.+|+++||++||+.+.++...+++.+++++||+|||||||||+|+|++.++.||.++|.+.
T Consensus 63 G~LT~lRS~LVsn~tLA~IA~~LgL~~~Lrlg~ge~~sgg~~~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll~p~l~ 142 (413)
T PRK12372 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILD 142 (413)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHcCchHhhhcCcchhhcCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998877666677899999999999999999999999999999887422
Q ss_pred --------CCCCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCC
Q 013554 294 --------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPP 350 (441)
Q Consensus 294 --------i~~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~ 350 (441)
.+.|+ ||||+|.+ ...|+|+++++.|+ +|.+.|.+.|..
T Consensus 143 ~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp------------------~h~~~F~V~V~v 191 (413)
T PRK12372 143 HIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA------------------AHNQQFEVECTV 191 (413)
T ss_pred hcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecC------------------CCCceEEEEEEE
Confidence 23378 99999998 77899999998883 677788876644
No 5
>PRK00102 rnc ribonuclease III; Reviewed
Probab=100.00 E-value=4e-35 Score=281.16 Aligned_cols=170 Identities=25% Similarity=0.359 Sum_probs=149.6
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 013554 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (441)
Q Consensus 135 ~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~ 214 (441)
.+..++++|||+|+| ++|+.+||||+|+.++. ....+|||||||||+||+++++++||.+||+.+
T Consensus 4 ~~~~l~~~lg~~f~~-------------~~ll~~Alth~S~~~~~--~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~ 68 (229)
T PRK00102 4 DLEELQKKLGYTFKD-------------PELLIQALTHRSYANEN--KGLKHNERLEFLGDAVLELVVSEYLFKRFPDLD 68 (229)
T ss_pred hHHHHHHHhCCCCCC-------------HHHHHHHhCccchhccC--CCcccchhHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 456799999999998 89999999999996531 235799999999999999999999999999999
Q ss_pred hhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCCC
Q 013554 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP 294 (441)
Q Consensus 215 eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~i 294 (441)
+|.|+.+|+.+|||++|+.+|.++||++||+.+++....++..++|++||+|||+|||||+|+|++.|.+|+.+++.+.+
T Consensus 69 ~g~l~~~~~~lvsn~~la~~a~~lgl~~~i~~~~~~~~~~~~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~~~~l 148 (229)
T PRK00102 69 EGDLSKLRAALVREESLAEIARELGLGEYLLLGKGEEKSGGRRRPSILADAFEALIGAIYLDQGLEAARKFILRLFEPRI 148 (229)
T ss_pred hhHHHHHHHHHhCHHHHHHHHHHCCcHHHHccCcHHHHcCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876554444456899999999999999999999999999988874422
Q ss_pred ----------CCCc-hHHHHhhc-CCCcceEEEeeeC
Q 013554 295 ----------EDKE-CQPKLRRQ-LEDVDYVSVEFEG 319 (441)
Q Consensus 295 ----------~~Kt-Lqel~q~~-~~~p~Y~~i~~~G 319 (441)
+.|+ |+++++++ ...|.|++++.+|
T Consensus 149 ~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g 185 (229)
T PRK00102 149 EEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEG 185 (229)
T ss_pred HhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccC
Confidence 2266 99999988 5679999988887
No 6
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=100.00 E-value=3.1e-34 Score=272.95 Aligned_cols=167 Identities=22% Similarity=0.321 Sum_probs=146.2
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhH
Q 013554 139 AKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218 (441)
Q Consensus 139 l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~eG~L 218 (441)
|+++|||+|+| ++|+.+||||+|+.+.. .....+|||||||||+||++++++++|.+||+.++|.|
T Consensus 1 ~e~~lgy~F~~-------------~~ll~~Alth~S~~~~~-~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l 66 (220)
T TIGR02191 1 LEKRLGYKFKN-------------KELLEQALTHSSYANEH-HKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGEL 66 (220)
T ss_pred ChHHhCCCcCC-------------HHHHHHHhcCccccccc-ccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH
Confidence 47899999998 89999999999997642 12356999999999999999999999999999999999
Q ss_pred HHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCCCC---
Q 013554 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE--- 295 (441)
Q Consensus 219 s~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~i~--- 295 (441)
+.+|+.+|||++|+.+|.++||+++|+++++.....++..+|++||+|||+|||||+|+|++.|.+|+.+++.+.+.
T Consensus 67 ~~~~~~lvsn~~la~~a~~~gl~~~i~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~~~~~~~ 146 (220)
T TIGR02191 67 SKLRAALVSEESLAEVARELGLGKFLLLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLLIPRIDAIE 146 (220)
T ss_pred HHHHHHHhCHHHHHHHHHHCCcHHHhccCchHhhcCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999988765544445568999999999999999999999999999988754322
Q ss_pred -------CCc-hHHHHhhc-CCCcceEEEeeeC
Q 013554 296 -------DKE-CQPKLRRQ-LEDVDYVSVEFEG 319 (441)
Q Consensus 296 -------~Kt-Lqel~q~~-~~~p~Y~~i~~~G 319 (441)
.|+ |++++|.. ...|.|+++...|
T Consensus 147 ~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g 179 (220)
T TIGR02191 147 KEETLKDYKTALQEWAQARGKPLPEYRLIKEEG 179 (220)
T ss_pred cccccCChHHHHHHHHHHcCCCCceEEEecccC
Confidence 266 99999987 5679999887777
No 7
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.97 E-value=2.5e-31 Score=234.86 Aligned_cols=125 Identities=27% Similarity=0.358 Sum_probs=106.7
Q ss_pred HHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHcCCcc
Q 013554 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQN 242 (441)
Q Consensus 163 ~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~ 242 (441)
++|+.+||||+||.++. ..+|||||||||+||++++++++|+++| .++|.++..|+.+|++++|+.+|.++||++
T Consensus 2 ~~Ll~~alTH~S~~~~~----~~~nerLefLGd~vL~~~vs~~l~~~~~-~~~g~l~~~~~~lv~~~~La~~a~~lgL~~ 76 (128)
T PF14622_consen 2 DELLLQALTHKSYAHER----KPNNERLEFLGDAVLGLVVSEYLFQRPP-ADEGELTRLRSNLVSNETLAEIAKQLGLDK 76 (128)
T ss_dssp HHHHHHHTB-HHHHHHT----CB-SHHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHSHHHHHHHHHHTTCGG
T ss_pred HHHHHHHhcCccccccc----cCccHHHHHHHHHHHHHHHHHHHHhCcC-ccchHHHHHHHHHhChHHHHHHHHHCCHHH
Confidence 68999999999997642 4799999999999999999999999955 489999999999999999999999999999
Q ss_pred ccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCC
Q 013554 243 LIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM 292 (441)
Q Consensus 243 ~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~ 292 (441)
+|+++.+......+..+|++||+|||+|||||+|+|++.|++||.+++.+
T Consensus 77 ~i~~~~~~~~~~~~~~~~vlad~feAliGAiyld~G~~~a~~~i~~~i~~ 126 (128)
T PF14622_consen 77 LIRWGPGEEKSGGSGSDKVLADVFEALIGAIYLDSGFEAARKFIQKLILP 126 (128)
T ss_dssp C-B--HHHHHTTGGG-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--
T ss_pred HHHhCccHhhcCCCCCccHHHhHHHHHHHHHHHHcCHHHHHHHHHHHhcc
Confidence 99998766655566678999999999999999999999999999998754
No 8
>smart00535 RIBOc Ribonuclease III family.
Probab=99.96 E-value=7.6e-29 Score=216.88 Aligned_cols=126 Identities=27% Similarity=0.363 Sum_probs=114.4
Q ss_pred HHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHcCCcccc
Q 013554 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244 (441)
Q Consensus 165 LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I 244 (441)
+|.+||||+||... ..+|||||||||+||+++++++++.+||+.++|.|+.+|+.+|||++|+.+|.++||++++
T Consensus 2 ll~~alth~s~~~~-----~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i 76 (129)
T smart00535 2 LLLRALTHASYSNE-----HEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFI 76 (129)
T ss_pred HHHHHhhccccccc-----CcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHH
Confidence 78999999999753 2699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCCCC
Q 013554 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295 (441)
Q Consensus 245 ~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~i~ 295 (441)
+.+.......++..+|++||+|||+|||+|+|+|++.|.+|+.+++.+.++
T Consensus 77 ~~~~~~~~~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~~~~~~~~ 127 (129)
T smart00535 77 RLGRGEAISGGRDKPSILADVFEALIGAIYLDSGLEAAREFIRDLLGPRLE 127 (129)
T ss_pred ccCchHhhcCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 988765433344578999999999999999999999999999999876553
No 9
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.95 E-value=5.4e-28 Score=211.73 Aligned_cols=127 Identities=28% Similarity=0.384 Sum_probs=114.1
Q ss_pred HHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHcCCcccc
Q 013554 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244 (441)
Q Consensus 165 LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I 244 (441)
|+.+||||+|+.... ...+|||||||||+||+++++++++..+|+.++|.++.+|+.+|||++|+.+|.++||+++|
T Consensus 2 ll~~alth~s~~~~~---~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i 78 (133)
T cd00593 2 LLLEALTHPSYANEH---GRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYL 78 (133)
T ss_pred HHHHhhcCccccccC---CCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHh
Confidence 789999999998631 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCCC
Q 013554 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP 294 (441)
Q Consensus 245 ~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~i 294 (441)
+.++..........+|++||+|||+|||+|+|+|.+.|.+|+.+++.+.+
T Consensus 79 ~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~~~ 128 (133)
T cd00593 79 RLGKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRLLGPLI 128 (133)
T ss_pred ccCchHhhcCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99876543333457999999999999999999999999999998876554
No 10
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.94 E-value=8.6e-27 Score=236.61 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=140.1
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 013554 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (441)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~e 215 (441)
+.++++++|..|.+ ..++.+|+|-+|-...+ -...+|||||||||+||.+++|++||.+||+.+|
T Consensus 275 ~~~~e~~~g~vF~H-------------irlla~aft~rs~~~n~--Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhE 339 (533)
T KOG1817|consen 275 LTQFEEIIGIVFIH-------------IRLLARAFTLRSIPFNH--LTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHE 339 (533)
T ss_pred hhhHHHHHHHHHHH-------------HHHHHHHhhccCCCchh--hhhhhhHHHHHhHHHHHHHHHHHHHHHhCCcccc
Confidence 35678899999998 89999999999876321 2346899999999999999999999999999999
Q ss_pred hhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCCCC
Q 013554 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295 (441)
Q Consensus 216 G~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~i~ 295 (441)
|.||.+|+.+|||++.+++|..+|+++|+..+..... ....+.|.+||+|||+|||+|+|.|.+.|++|+...+.|.++
T Consensus 340 GhLSlLRssLVsNetqakva~~lgf~e~li~n~~~k~-~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~Prl~ 418 (533)
T KOG1817|consen 340 GHLSLLRSSLVSNETQAKVADDLGFHEYLITNFDLKD-FQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFFPRLK 418 (533)
T ss_pred chHHHHHHHHhccHHHHHHHHHhCCchhhhhCcchhh-hhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999998764322 234568999999999999999999999999999999887654
Q ss_pred C----------Cc-hHHHHhhc----CCC---cceEEEeeeC
Q 013554 296 D----------KE-CQPKLRRQ----LED---VDYVSVEFEG 319 (441)
Q Consensus 296 ~----------Kt-Lqel~q~~----~~~---p~Y~~i~~~G 319 (441)
. |+ ||.+|-.. ++. |.|.++...|
T Consensus 419 ~fi~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~g 460 (533)
T KOG1817|consen 419 EFIRNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKG 460 (533)
T ss_pred HHHHhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccC
Confidence 3 56 88877654 122 3455555555
No 11
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.89 E-value=9.2e-24 Score=181.38 Aligned_cols=91 Identities=26% Similarity=0.343 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhh--------------
Q 013554 188 SRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL-------------- 253 (441)
Q Consensus 188 ERLEFLGDaVLkl~vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~-------------- 253 (441)
||||||||+||+++|+++||.+||+.++|.||.+|+.+|||++|+.+|.++||++|++........
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 799999999999999999999999999999999999999999999999999999999853211100
Q ss_pred ---------hccCCCChHHhHHHHHHHHHHHhCC
Q 013554 254 ---------IRKEREPPVKSVFWALFGAIYLCFG 278 (441)
Q Consensus 254 ---------~~~~~~K~lADvfEALIGAIYlD~G 278 (441)
.....+|++||+|||+|||+|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0112379999999999999999998
No 12
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.89 E-value=1.4e-23 Score=213.42 Aligned_cols=235 Identities=20% Similarity=0.232 Sum_probs=170.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccc---c---------------c--------------
Q 013554 134 EYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNK---A---------------R-------------- 181 (441)
Q Consensus 134 ~~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~---~---------------~-------------- 181 (441)
..+..+++.+||+|+| ..+|..||||||+...- . .
T Consensus 41 ~~l~~~e~~i~y~f~~-------------r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~~~yg~~~~~~~~kr~~ 107 (533)
T KOG1817|consen 41 QSLDHLEELIGYTFQD-------------RCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKRKL 107 (533)
T ss_pred HhHHHHHHHhCeeecc-------------hHHHHHHhcCchHHhhCCCCchhhhccccccCcCCcccchhHHHHHHHHHh
Confidence 3578899999999998 79999999999984310 0 0
Q ss_pred -------------------cCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHcCCcc
Q 013554 182 -------------------HVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQN 242 (441)
Q Consensus 182 -------------------~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~ 242 (441)
....+|||||||||++.+++++.++|..+|...+|.|...|+++|.|+.++.+|+++.++.
T Consensus 108 gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrkd~ 187 (533)
T KOG1817|consen 108 GINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRKDE 187 (533)
T ss_pred hhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 0135789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhC---CCCCCCchHHHHhhcCCCcceEEEeeeC
Q 013554 243 LIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG---MDPEDKECQPKLRRQLEDVDYVSVEFEG 319 (441)
Q Consensus 243 ~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~---~~i~~KtLqel~q~~~~~p~Y~~i~~~G 319 (441)
++....+.+.....+....+|++|||+|||+|+|+|...+...+.+.+. +.++.+
T Consensus 188 fl~yahg~dl~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~epvlee~---------------------- 245 (533)
T KOG1817|consen 188 FLLYAHGYDLCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEPVLEEE---------------------- 245 (533)
T ss_pred HHHHhcCcchhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCchhhcc----------------------
Confidence 9986554333222234578999999999999999999998888766652 222111
Q ss_pred CccccccccccCCCchhhhccccceeeccCCCcccccCcccCC-CChhHHHHHhCCCcccCCChhhHHHHHHhhhhhccc
Q 013554 320 NKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDF-DSRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQ 398 (441)
Q Consensus 320 ~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~~r~~~~l~~~-~~~~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq 398 (441)
|..+ | .|+-... -|..+++.--.|.- -..-+.|+++|..|.+..++ ..
T Consensus 246 ----w~~~-----~-----ehelq~~---ep~gDr~~~~~~Ppllp~~~~e~~~g~vF~Hirll--------------a~ 294 (533)
T KOG1817|consen 246 ----WEHE-----P-----EHELQEQ---EPAGDRVLITKYPPLLPLTQFEEIIGIVFIHIRLL--------------AR 294 (533)
T ss_pred ----ccCC-----C-----cCccccc---CCCccccccccCCCCCchhhHHHHHHHHHHHHHHH--------------HH
Confidence 1100 0 0100000 00111111111111 11237899999999876543 23
Q ss_pred ccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 399 LCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 399 ~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
|||--|-..|.-+-+.-||||||||+||-.+.|-|.
T Consensus 295 -aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~il 330 (533)
T KOG1817|consen 295 -AFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEIL 330 (533)
T ss_pred -HhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHH
Confidence 888888865555667899999999999999998763
No 13
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.87 E-value=2.1e-22 Score=232.14 Aligned_cols=223 Identities=20% Similarity=0.172 Sum_probs=159.5
Q ss_pred HHHHHHhC--CCCCCC-CCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013554 137 LEAKQALG--YSLEPS-DQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (441)
Q Consensus 137 ~~l~~~LG--y~F~~~-~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~ 213 (441)
+.++..+. |.|.++ -++. ....+|++|||+.+|.. .+++||||+|||++|+++++.+||.+||+.
T Consensus 982 E~~e~i~n~~~~Fs~~~~~i~------~~~s~LLEAlT~~~~~~------s~s~Erle~Lgds~Lk~avsr~l~L~ypd~ 1049 (1606)
T KOG0701|consen 982 EAVEKILNFRYVFSISLASIA------LSTSLLLEALTTSSCQD------SFSLERLELLGDSLLKLAVSRHLFLTYPDL 1049 (1606)
T ss_pred cccccccccceeccccccccc------cchhHHHHHhhcCcccc------chhHHHHHhhHHHHHHHHHHHHHHHhCCcc
Confidence 44566666 888871 0000 01289999999999974 589999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhh-----------------------------------------
Q 013554 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDR----------------------------------------- 252 (441)
Q Consensus 214 ~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~----------------------------------------- 252 (441)
+||+++.+|..+++|.+|+.+|...||..|++.+..+..
T Consensus 1050 ~Egqls~lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~ 1129 (1606)
T KOG0701|consen 1050 DEGQLSRLRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAM 1129 (1606)
T ss_pred cchhHHHHHHhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhhhhhHHHHhh
Confidence 999999999999999999999999999999986410000
Q ss_pred ---------hh---ccCCCChHHhHHHHHHHHHHHhCCHHHHH-----HHHHHhhCCCCCCCchHHHHhhcCCCcceEEE
Q 013554 253 ---------LI---RKEREPPVKSVFWALFGAIYLCFGFPEVY-----RVLFEVFGMDPEDKECQPKLRRQLEDVDYVSV 315 (441)
Q Consensus 253 ---------~~---~~~~~K~lADvfEALIGAIYlD~G~~~a~-----~fv~~~~~~~i~~KtLqel~q~~~~~p~Y~~i 315 (441)
.+ ....+|++||++||++||+|+|+|+..+. .++. |.+...+..++
T Consensus 1130 ~~~~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk-~~~~~~dy~~~---------------- 1192 (1606)
T KOG0701|consen 1130 EKEDGDSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLK-WSITNYDYDTL---------------- 1192 (1606)
T ss_pred hccCCcccccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHh-hhhhhhhhhcc----------------
Confidence 00 12348999999999999999999988866 4443 44433332210
Q ss_pred eeeCCccccccccccCCCchhhhccccceeeccCCCcccccCcccCCCChhHHHHHhCC--CcccCCChhhHHHHHHhhh
Q 013554 316 EFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDSRPQVMQTLGY--PLVVQDRIPEITEARNIEL 393 (441)
Q Consensus 316 ~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~~r~~~~l~~~~~~~~le~~lgY--~F~~~~~~~~~~~a~~~~~ 393 (441)
...|. . ...++.+ ..-...+..++|+.++| .|.. .
T Consensus 1193 e~~~~-------------~------~~~~~~s----------~~~~~~~~~~ler~l~~~~~~~~--------------~ 1229 (1606)
T KOG0701|consen 1193 EPKHA-------------G------KLSFRRS----------KIVKKKNLDRLERELGLKFKFLE--------------A 1229 (1606)
T ss_pred cccch-------------h------hhhhhhh----------hHhhhhhHHHHHHhhcccchhhh--------------h
Confidence 00010 0 0000000 00011234578999999 4433 3
Q ss_pred hhcccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhc
Q 013554 394 GLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCF 434 (441)
Q Consensus 394 ~l~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~ 434 (441)
++..| ||+|+|.... ...||||+||+||++||++++++
T Consensus 1230 ~l~~~-~~~~~s~~~~--~ld~~erl~~~~d~vld~l~~~~ 1267 (1606)
T KOG0701|consen 1230 ALLVQ-AFIHCSLRAE--GLDATERLEFLGDAVLDKLSDKH 1267 (1606)
T ss_pred hcchh-hccccccccc--ccchHHHHHhhHHHHHHHHHHhh
Confidence 44466 9999999653 37899999999999999998875
No 14
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.64 E-value=7.6e-17 Score=186.68 Aligned_cols=209 Identities=19% Similarity=0.125 Sum_probs=156.0
Q ss_pred HHHHHHHhCC--CCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013554 136 LLEAKQALGY--SLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (441)
Q Consensus 136 l~~l~~~LGy--~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~ 213 (441)
+..++..++| .|.. ..++.+|++|+|.... ....+||++|+||++|+...+.+.+..+...
T Consensus 1213 ~~~ler~l~~~~~~~~-------------~~l~~~~~~~~s~~~~----~ld~~erl~~~~d~vld~l~~~~~~~~~~~~ 1275 (1606)
T KOG0701|consen 1213 LDRLERELGLKFKFLE-------------AALLVQAFIHCSLRAE----GLDATERLEFLGDAVLDKLSDKHPFEVFIRL 1275 (1606)
T ss_pred HHHHHHhhcccchhhh-------------hhcchhhccccccccc----ccchHHHHHhhHHHHHHHHHHhhhHhhhhcc
Confidence 4578888998 5554 6899999999998764 2345999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhC--cchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhC
Q 013554 214 SPAPMRERVFGLIG--RRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG 291 (441)
Q Consensus 214 ~eG~Ls~~Rs~LVs--N~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~ 291 (441)
..|+++..+.+-++ |.+++..+..-.++-+++.... ..+|.++|.+|++||+.-..+|-..+..++ ++..
T Consensus 1276 ~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~~~s~-------~~~K~i~d~v~sli~~~~~~~~~~s~l~~~-~~~~ 1347 (1606)
T KOG0701|consen 1276 DGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQSS-------VLEKSIADSVEALIGASLSEGGPSSALLFM-DWPP 1347 (1606)
T ss_pred cCcchhhhhhhhhhhhhhcccccccCCcceeeehhhcc-------CccchHHHHHHHhhhhhhhccCCCcccccc-cccc
Confidence 99999999999999 8887777777777766665433 247999999999999966666655555444 2221
Q ss_pred CCCCCCchHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCcccccCcccCCCChhHHHHH
Q 013554 292 MDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNLWDFDSRPQVMQT 371 (441)
Q Consensus 292 ~~i~~KtLqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~~r~~~~l~~~~~~~~le~~ 371 (441)
...+.. +. .+|+. +...+|+.....++|+.
T Consensus 1348 ~l~~i~-------------------es-------------------~~~~~------------~~~~~~~l~~~~~~e~~ 1377 (1606)
T KOG0701|consen 1348 ILLDIP-------------------ES-------------------IASPD------------SIDELRQLLSFGKFEEK 1377 (1606)
T ss_pred cccccc-------------------cc-------------------ccccc------------hhHHHHHHHHHHhhhcc
Confidence 111000 00 01110 01223444456788999
Q ss_pred hCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 372 LGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 372 lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
+||.|..+..+ .| |+||.||..+. .+.||||||||||+|+|++||.+.
T Consensus 1378 l~y~f~~~~~l--------------~~-a~th~s~~~~~-~~~C~qrleflgd~vld~~it~hl 1425 (1606)
T KOG0701|consen 1378 LNYRFKLKPYL--------------TQ-ATTHASYIYNR-ITDCYQRLEFLGDAVLDYLITKHL 1425 (1606)
T ss_pred cchhhhhhhcc--------------cc-cccccccccCc-cchhhhhHHHhHHhhhhhhhhhcc
Confidence 99999876543 55 99999997765 578999999999999999999763
No 15
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.1e-12 Score=127.36 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=138.2
Q ss_pred HHHHHHHHhC-CCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccc-------------cCCCCchHHHHHHHHHHHH
Q 013554 135 YLLEAKQALG-YSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKAR-------------HVRAGHSRLCFLGQFVLEL 200 (441)
Q Consensus 135 ~l~~l~~~LG-y~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~-------------~~~~nyERLEFLGDaVLkl 200 (441)
-+..+.++|| ..|. .+.+..|||.+|+...... ....+|+-|--.|..++.+
T Consensus 64 el~afg~RL~~~~is--------------~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~ 129 (333)
T KOG3769|consen 64 ELSAFGKRLQSEEIS--------------LSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSF 129 (333)
T ss_pred HHHHHHHHhcccccc--------------HHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHH
Confidence 3678999999 5555 5899999999998653210 2457899999999999999
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHH
Q 013554 201 AFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280 (441)
Q Consensus 201 ~vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~ 280 (441)
.|+++|-.+||++++..++.+-+.+++.+.|+.+|..+|+.++++....... +....+++..+++=|++|+++...|+.
T Consensus 130 ~v~~~l~~kyPrlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~-~eisq~ess~~aI~Al~~~~~~ek~~~ 208 (333)
T KOG3769|consen 130 YVTEYLKCKYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKV-GEISQDESSRRAIGALLGSVGLEKGFN 208 (333)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCc-hhhhHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999999999999999999999999999999999999887543321 111235778888888888888888888
Q ss_pred HHHHHHHHhh-CCCCCC--------Cc--hHHHHhhc-CCCcceEEEeeeCC
Q 013554 281 EVYRVLFEVF-GMDPED--------KE--CQPKLRRQ-LEDVDYVSVEFEGN 320 (441)
Q Consensus 281 ~a~~fv~~~~-~~~i~~--------Kt--Lqel~q~~-~~~p~Y~~i~~~G~ 320 (441)
.+++|+..++ +.+++. .. |.++|+++ ...|+++++.++|.
T Consensus 209 ~v~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr 260 (333)
T KOG3769|consen 209 FVRDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGR 260 (333)
T ss_pred HHHHHHHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhcc
Confidence 8888887765 344542 12 67788888 88999999999994
No 16
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.26 E-value=1.6e-12 Score=126.40 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=44.9
Q ss_pred hhHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCC-CCCChhhhhhhcchhhhhhhhhcc
Q 013554 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEH-PRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 365 ~~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~-~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
...+++.+||+|+++.++ .| ||||+||.. +| ....||||||||||||+++|+-|.
T Consensus 8 ~~~l~~~lg~~f~~~~lL--------------~~-AltH~S~~~-e~~~~~~nERLEFLGDavL~l~vae~L 63 (235)
T COG0571 8 LEALEKKLGYTFKDKELL--------------EQ-ALTHRSYAN-EHKAVENNERLEFLGDAVLGLVVAEYL 63 (235)
T ss_pred HHHHHHHhCCCcCCHHHH--------------HH-HhcCcchhc-cccCCcchHHHHhhHHHHHHHHHHHHH
Confidence 346899999999987542 34 999999943 33 578999999999999999999763
No 17
>PRK12371 ribonuclease III; Reviewed
Probab=99.25 E-value=2.2e-12 Score=125.59 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=43.3
Q ss_pred hhHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhc
Q 013554 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCF 434 (441)
Q Consensus 365 ~~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~ 434 (441)
...||+++||+|++++++ .+ |||||||... ...+||||||||||||+++|+-|
T Consensus 12 ~~~le~~lgy~F~~~~Ll--------------~~-AlTH~S~~~~--~~~~~eRLEFLGDavL~l~vs~~ 64 (235)
T PRK12371 12 ASILEERTGHRFANKERL--------------ER-ALTHSSARAS--KQGNYERLEFLGDRVLGLCVAEM 64 (235)
T ss_pred HHHHHHHHCCCCCCHHHH--------------HH-HHcCcCcccC--CccchHhHHHHHHHHHHHHHHHH
Confidence 347999999999986542 44 9999999542 24689999999999999999965
No 18
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.22 E-value=3.5e-12 Score=122.48 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=45.8
Q ss_pred hhHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 365 ~~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
...||+++||+|++++++ ++ |||||||....+...+|||||||||||||++|+.|.
T Consensus 5 ~~~l~~~lg~~f~~~~ll--------------~~-Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l 60 (229)
T PRK00102 5 LEELQKKLGYTFKDPELL--------------IQ-ALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYL 60 (229)
T ss_pred HHHHHHHhCCCCCCHHHH--------------HH-HhCccchhccCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 346999999999986542 44 999999954334577999999999999999999874
No 19
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=98.76 E-value=5.7e-10 Score=98.70 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=29.2
Q ss_pred cccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 396 GLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 396 ~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
.+| ||||+||.. ++ .++|||||||||+||+++||.|.
T Consensus 5 l~~-alTH~S~~~-~~-~~~nerLefLGd~vL~~~vs~~l 41 (128)
T PF14622_consen 5 LLQ-ALTHKSYAH-ER-KPNNERLEFLGDAVLGLVVSEYL 41 (128)
T ss_dssp HHH-HTB-HHHHH-HT-CB-SHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhcCccccc-cc-cCccHHHHHHHHHHHHHHHHHHH
Confidence 356 999999943 33 47999999999999999999874
No 20
>smart00535 RIBOc Ribonuclease III family.
Probab=98.64 E-value=9.5e-09 Score=89.77 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=30.2
Q ss_pred cccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 396 GLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 396 ~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
.+| |||||||.. . .++|||||||||+||+++++.|.
T Consensus 3 l~~-alth~s~~~-~--~~~~e~Le~lGd~vl~~~v~~~l 38 (129)
T smart00535 3 LLR-ALTHASYSN-E--HEHNERLEFLGDAVLELVVTEYL 38 (129)
T ss_pred HHH-Hhhcccccc-c--CcchHHHHHHHHHHHHHHHHHHH
Confidence 356 999999953 2 26999999999999999999764
No 21
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=98.62 E-value=1.3e-08 Score=88.99 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=31.3
Q ss_pred ccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 397 LQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 397 lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
+| |||||||.... ...+||||||||||||+++|+.|.
T Consensus 4 ~~-alth~s~~~~~-~~~~~e~Le~lGdavl~~~~~~~l 40 (133)
T cd00593 4 LE-ALTHPSYANEH-GRFNNERLEFLGDAVLELVVTEYL 40 (133)
T ss_pred HH-hhcCccccccC-CCcchHHHHHHHHHHHHHHHHHHH
Confidence 44 99999996533 357999999999999999999875
No 22
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=98.12 E-value=1e-06 Score=84.01 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=34.7
Q ss_pred HHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhc
Q 013554 368 VMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCF 434 (441)
Q Consensus 368 le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~ 434 (441)
||+++||+|++++++ .+.---..-.....+..++|||||||||+||+++|+.|
T Consensus 1 ~e~~lgy~F~~~~ll--------------~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~ 53 (220)
T TIGR02191 1 LEKRLGYKFKNKELL--------------EQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEY 53 (220)
T ss_pred ChHHhCCCcCCHHHH--------------HHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHH
Confidence 578899999987643 34000000001112346799999999999999999975
No 23
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=97.89 E-value=6.4e-05 Score=66.65 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhc-----cCCCC-
Q 013554 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIR-----KEREP- 260 (441)
Q Consensus 187 yERLEFLGDaVLkl~vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~-----~~~~K- 260 (441)
==-|+|+||||+++.|-.|+...+-. .++.||+.-.+.||.+.-+.+-..+ .+++.-...+....| ...+|
T Consensus 15 ~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~~--~~~Lte~E~~I~KRgRNaks~T~~kn 91 (132)
T COG1939 15 GLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKAL--LEFLTEEEEEIVKRGRNAKSGTKPKN 91 (132)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHHH--HHHhhHHHHHHHHHhcccccCCCCCC
Confidence 34699999999999999999987533 7899999999999999888776543 222221100000000 11122
Q ss_pred ------hHHhHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 013554 261 ------PVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (441)
Q Consensus 261 ------~lADvfEALIGAIYlD~G~~~a~~fv~~~~ 290 (441)
-.|.-||||||.+|+..-.+.-..++...+
T Consensus 92 ~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~i 127 (132)
T COG1939 92 TDVETYRMSTGFEALIGYLYLTKQEERLEELLNKVI 127 (132)
T ss_pred CChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 378899999999999999988777775544
No 24
>PRK12372 ribonuclease III; Reviewed
Probab=93.45 E-value=0.026 Score=59.38 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=33.7
Q ss_pred hHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhh--hhhcchhhhhhhhhc
Q 013554 366 PQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERL--EYVGQKIQVKSYSCF 434 (441)
Q Consensus 366 ~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRL--EFLGDavLD~~~~~~ 434 (441)
..||++|||+|++++++ .| ||||+||.... -.-.+=| -+|+=.|-++++..|
T Consensus 4 ~~LEk~LGY~Fkn~~LL--------------~e-ALTH~Sy~~~~--NERLEFLGDAVL~liVse~Lf~~f 57 (413)
T PRK12372 4 SQLESRLRYEFRNAELL--------------RQ-ALTHRSHSATH--NERLEFLGDSVLNCAVAALLFQRF 57 (413)
T ss_pred HHHHHHhCCCcCCHHHH--------------HH-HHhcccccccc--HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36999999999986542 33 99999994321 1234444 356666666666543
No 25
>PRK14718 ribonuclease III; Provisional
Probab=92.68 E-value=0.04 Score=58.53 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=34.1
Q ss_pred hHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhh--hhhcchhhhhhhhhc
Q 013554 366 PQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERL--EYVGQKIQVKSYSCF 434 (441)
Q Consensus 366 ~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRL--EFLGDavLD~~~~~~ 434 (441)
..||++|||+|+++++ |+.||||+||.... -.-.+=| -+|+=.|-++++..|
T Consensus 4 ~~LEkrLGY~Fkn~~L---------------L~eALTH~Sys~e~--NERLEFLGDAVL~liVse~Lf~~f 57 (467)
T PRK14718 4 SQLESRLRYEFRNAEL---------------LRQALTHRSHSATH--NERLEFLGDSVLNCAVAALLFQRF 57 (467)
T ss_pred HHHHHHhCCCcCCHHH---------------HHHHHhccCcCccc--HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4699999999987654 33399999994321 1224433 366666777776554
No 26
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=88.29 E-value=2.1 Score=37.20 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hCCCCChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHH
Q 013554 189 RLCFLGQFVLELAFCEFFLQ--RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVF 266 (441)
Q Consensus 189 RLEFLGDaVLkl~vs~~Ly~--~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvf 266 (441)
.|.-+||++++++++-.|-+ -+|. | .-|-|.+|+-.-...||.+.+.+.- ....-.|..
T Consensus 2 ~Lak~GDSLvNfl~SlALse~lG~Pt---g-------~rVPnaSLaiAl~~a~L~~~~~PR~---------dkh~kGd~a 62 (120)
T PF11469_consen 2 GLAKFGDSLVNFLFSLALSEYLGRPT---G-------DRVPNASLAIALELAGLSHLLPPRT---------DKHGKGDIA 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS--CG---------GCCGHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHHhCCCC---C-------CCCCChHHHHHHHHHhhhhhCcccc---------cccCccHHH
Confidence 47789999999999988764 3343 2 2477888888888889988876431 123458999
Q ss_pred HHHHHHHHHhCC--HHHHHHHHHHhhCCCC
Q 013554 267 WALFGAIYLCFG--FPEVYRVLFEVFGMDP 294 (441)
Q Consensus 267 EALIGAIYlD~G--~~~a~~fv~~~~~~~i 294 (441)
||+|+-.|+.+- .+.|..++...+..++
T Consensus 63 EA~iAyAWLeg~it~eEaveil~~nl~~dv 92 (120)
T PF11469_consen 63 EALIAYAWLEGKITIEEAVEILKANLTEDV 92 (120)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHCT--GGG
T ss_pred HHHHHHHHHhccccHHHHHHHHHhcCchhh
Confidence 999999999985 5668787776665443
No 27
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=86.06 E-value=0.81 Score=43.37 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=32.9
Q ss_pred CCCCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 293 ~i~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
..+.|+ ||||+|.++....|++++..|+ +|.+.|.++|..+
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l~Y~li~~~Gp------------------dH~~~Ftv~V~V~ 148 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPLEFCETRSGGH------------------DHCPLFTCTIVVS 148 (183)
T ss_pred CCCccHHHHHHHHhcCCCCeEEEEEeECC------------------CCCceEEEEEEEC
Confidence 456699 9999999944448999999993 7899999887554
No 28
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=72.62 E-value=4.6 Score=38.40 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=28.8
Q ss_pred CCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 295 ~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
+.|+ ||||+|+++... |..+...|+ +|.+.|.++|..+.
T Consensus 110 NpKS~LQE~~Qk~~~~~-y~~i~~~Gp------------------~H~p~F~v~V~I~g 149 (183)
T PHA03103 110 NPCTVINEYCQITSRDW-SINITSSGP------------------SHSPTFTASVIISG 149 (183)
T ss_pred ChhHHHHHHHHHhCCCe-EEEEEeeCC------------------CCCceEEEEEEECC
Confidence 4478 999999984444 666777883 78889998875544
No 29
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=58.57 E-value=14 Score=27.67 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=19.0
Q ss_pred Cc-hHHHHhhcCCCcceEEEeeeC
Q 013554 297 KE-CQPKLRRQLEDVDYVSVEFEG 319 (441)
Q Consensus 297 Kt-Lqel~q~~~~~p~Y~~i~~~G 319 (441)
++ |+|++++.+..|.|..+...|
T Consensus 2 ~~~L~e~~~~~~~~~~y~~~~~~g 25 (67)
T smart00358 2 KSLLQELAQKRGLPPEYELVKEEG 25 (67)
T ss_pred chHHHHHHHHCCCCCEEEEEeeeC
Confidence 45 899999886589999887666
No 30
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=49.10 E-value=21 Score=26.50 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.5
Q ss_pred Cc-hHHHHhhc-CCCcceEEEeeeC
Q 013554 297 KE-CQPKLRRQ-LEDVDYVSVEFEG 319 (441)
Q Consensus 297 Kt-Lqel~q~~-~~~p~Y~~i~~~G 319 (441)
++ |+|+++++ ...|.|..+...|
T Consensus 3 ~~~L~e~~~~~~~~~~~y~~~~~~g 27 (68)
T cd00048 3 KSLLQELAQKRGKPLPEYELVEEEG 27 (68)
T ss_pred HHHHHHHHHHcCCCCCeEEEeeeeC
Confidence 45 89999998 8899999877777
No 31
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=40.68 E-value=39 Score=27.62 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=19.2
Q ss_pred hHHHHhhc-CCCcceEEEeeeC
Q 013554 299 CQPKLRRQ-LEDVDYVSVEFEG 319 (441)
Q Consensus 299 Lqel~q~~-~~~p~Y~~i~~~G 319 (441)
|.++|+++ -+.|.|.+....|
T Consensus 7 L~elC~k~~W~~P~y~l~~~~G 28 (80)
T PF14709_consen 7 LNELCQKNKWGPPVYELVSESG 28 (80)
T ss_pred HHHHHHhcCCCCCeEEEEeccC
Confidence 88999998 8999999998888
No 32
>PRK02287 hypothetical protein; Provisional
Probab=39.84 E-value=30 Score=32.59 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHh
Q 013554 263 KSVFWALFGAIYLCFGFPEVYRVLFEV 289 (441)
Q Consensus 263 ADvfEALIGAIYlD~G~~~a~~fv~~~ 289 (441)
=.++||+.+|+|+.+.-+.|.+++..+
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F 133 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKF 133 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 358999999999999999999988644
No 33
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=32.78 E-value=18 Score=25.37 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=10.2
Q ss_pred ChHHhHHHHHHHH
Q 013554 260 PPVKSVFWALFGA 272 (441)
Q Consensus 260 K~lADvfEALIGA 272 (441)
-+-.|+||||||+
T Consensus 23 LtpEDAvEaLi~~ 35 (35)
T PF08383_consen 23 LTPEDAVEALIGN 35 (35)
T ss_pred CCHHHHHHHHhcC
Confidence 3458999999984
No 34
>COG2158 Uncharacterized protein containing a Zn-finger-like domain [General function prediction only]
Probab=28.49 E-value=20 Score=31.22 Aligned_cols=16 Identities=44% Similarity=1.240 Sum_probs=11.0
Q ss_pred hhhcchhhhhhhhhccCccc
Q 013554 420 EYVGQKIQVKSYSCFCPFYN 439 (441)
Q Consensus 420 EFLGDavLD~~~~~~~~~~~ 439 (441)
-|-|| -..=||||||-
T Consensus 29 HfdgQ----nC~fCyCPfYp 44 (112)
T COG2158 29 HFDGQ----NCLFCYCPFYP 44 (112)
T ss_pred eecCC----ceeEEeccccc
Confidence 36666 34469999993
No 35
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=27.66 E-value=62 Score=30.62 Aligned_cols=27 Identities=26% Similarity=0.064 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHh
Q 013554 263 KSVFWALFGAIYLCFGFPEVYRVLFEV 289 (441)
Q Consensus 263 ADvfEALIGAIYlD~G~~~a~~fv~~~ 289 (441)
=.++||+++|+|+-+=.+.|..++..+
T Consensus 115 Lss~EAlaAaLYI~G~~deA~~lls~F 141 (179)
T COG2042 115 LSSAEALAAALYIVGFKDEASELLSKF 141 (179)
T ss_pred hchHHHHHHHHHHhCcHHHHHHHHhhC
Confidence 468999999999999999999988654
No 36
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=27.03 E-value=61 Score=33.70 Aligned_cols=43 Identities=16% Similarity=0.048 Sum_probs=34.3
Q ss_pred hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCcccccCcc
Q 013554 299 CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRFRGNL 359 (441)
Q Consensus 299 Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~~r~~~~l 359 (441)
|++++|++ ...|.|.++.+.|. .|-|.|.+++..+....+|..
T Consensus 148 L~e~~q~k~~k~P~yelv~E~G~------------------~~~rEFv~q~sv~~~~~~GkG 191 (339)
T KOG3732|consen 148 LQELAQAKKWKLPEYELVQESGV------------------PHRREFVIQCSVENFTEEGKG 191 (339)
T ss_pred HHHHHHHhCCCCCceEEEeccCC------------------CccceEEEEEEecceeeecCC
Confidence 99999988 88999999999993 577889888877665544443
No 37
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=26.84 E-value=63 Score=29.09 Aligned_cols=27 Identities=22% Similarity=0.057 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHh
Q 013554 263 KSVFWALFGAIYLCFGFPEVYRVLFEV 289 (441)
Q Consensus 263 ADvfEALIGAIYlD~G~~~a~~fv~~~ 289 (441)
=.++||+.+|+|+.+=.+.|.+++..+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~F 92 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKF 92 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcC
Confidence 468999999999998888899887544
Done!