Query 013554
Match_columns 441
No_of_seqs 376 out of 1594
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 100.0 1.5E-40 5E-45 365.6 8.3 185 101-306 243-461 (756)
2 3n3w_A Ribonuclease III; nucle 100.0 5.4E-39 1.8E-43 312.0 13.3 179 136-351 28-218 (248)
3 1o0w_A Ribonuclease III, RNAse 100.0 7.4E-38 2.5E-42 304.2 12.0 188 133-351 18-220 (252)
4 2nug_A Ribonuclease III, RNAse 100.0 2.6E-37 9E-42 294.5 13.1 174 135-351 3-191 (221)
5 2a11_A Ribonuclease III, RNAse 100.0 3E-37 1E-41 297.9 9.1 181 136-351 7-202 (242)
6 3o2r_A Ribonuclease III; struc 100.0 4.7E-36 1.6E-40 276.3 14.0 141 136-295 28-168 (170)
7 3c4b_A Endoribonuclease dicer; 100.0 1.3E-34 4.5E-39 282.5 15.0 155 136-306 15-210 (265)
8 3rv0_A K. polysporus DCR1; RNA 100.0 7.2E-34 2.5E-38 287.5 8.7 170 137-319 86-282 (341)
9 3rv1_A K. polysporus DCR1; RNA 100.0 2.2E-32 7.6E-37 265.1 9.6 145 137-294 86-240 (246)
10 2qvw_A GLP_546_48378_50642; di 99.9 8E-28 2.7E-32 264.6 12.2 145 135-295 594-753 (756)
11 1u61_A Hypothetical protein; s 99.9 3.2E-22 1.1E-26 178.2 10.7 106 184-290 9-126 (138)
12 2gsl_A Hypothetical protein; a 99.8 3.8E-20 1.3E-24 164.6 8.5 109 184-294 12-130 (137)
13 3c4b_A Endoribonuclease dicer; 99.4 4.8E-14 1.7E-18 137.1 2.9 55 365-435 15-69 (265)
14 3o2r_A Ribonuclease III; struc 99.3 4.1E-13 1.4E-17 123.3 2.3 53 364-435 27-79 (170)
15 3n3w_A Ribonuclease III; nucle 99.2 1.3E-12 4.3E-17 126.6 2.2 52 365-435 28-79 (248)
16 2nug_A Ribonuclease III, RNAse 99.2 1.9E-12 6.5E-17 122.8 2.2 52 365-435 4-55 (221)
17 3rv1_A K. polysporus DCR1; RNA 99.2 1.8E-12 6.1E-17 125.6 1.1 56 365-435 85-148 (246)
18 2a11_A Ribonuclease III, RNAse 99.2 1.5E-12 5E-17 125.2 -0.8 56 364-435 6-61 (242)
19 1o0w_A Ribonuclease III, RNAse 99.1 2.3E-12 7.7E-17 124.9 -3.3 56 365-435 21-81 (252)
20 3rv0_A K. polysporus DCR1; RNA 99.1 1.6E-11 5.3E-16 124.2 0.7 56 365-435 85-148 (341)
21 3adj_A F21M12.9 protein; HYL1, 94.1 0.03 1E-06 44.0 3.1 37 297-351 7-45 (76)
22 2dix_A Interferon-inducible do 94.1 0.03 1E-06 45.0 3.2 39 295-351 9-48 (84)
23 1di2_A XLRBPA, double stranded 94.1 0.03 1E-06 43.0 3.0 37 297-351 3-41 (69)
24 2b7t_A Double-stranded RNA-spe 93.6 0.046 1.6E-06 42.5 3.4 40 294-352 4-44 (73)
25 3adg_A F21M12.9 protein; HYL1, 93.6 0.041 1.4E-06 42.8 3.0 39 294-351 3-43 (73)
26 1uhz_A Staufen (RNA binding pr 93.6 0.043 1.5E-06 44.7 3.2 39 295-351 7-47 (89)
27 2khx_A Ribonuclease 3; drosha, 93.5 0.048 1.6E-06 44.0 3.4 40 295-352 2-48 (85)
28 3llh_A RISC-loading complex su 93.5 0.037 1.3E-06 45.0 2.7 39 295-351 15-54 (90)
29 3adl_A RISC-loading complex su 93.2 0.052 1.8E-06 44.1 3.1 39 295-351 16-56 (88)
30 1ekz_A DSRBDIII, maternal effe 93.0 0.039 1.3E-06 43.2 2.1 38 295-350 8-46 (76)
31 2cpn_A TAR RNA-binding protein 93.0 0.054 1.9E-06 44.0 3.0 37 296-350 18-56 (89)
32 1t4o_A Ribonuclease III; RNT1P 92.7 0.048 1.6E-06 46.9 2.2 40 294-352 8-48 (117)
33 2dmy_A Spermatid perinuclear R 92.6 0.08 2.7E-06 43.7 3.5 39 295-352 17-56 (97)
34 1x49_A Interferon-induced, dou 92.4 0.068 2.3E-06 44.2 2.8 37 297-351 17-54 (97)
35 1t4n_A Ribonuclease III; DSRBD 92.3 0.044 1.5E-06 45.3 1.5 39 295-352 7-46 (94)
36 2l33_A Interleukin enhancer-bi 91.5 0.12 4E-06 42.4 3.2 39 295-352 15-54 (91)
37 2l2n_A Hyponastic leave 1; DSR 91.5 0.15 5.2E-06 42.5 3.9 40 293-351 16-57 (103)
38 1whq_A RNA helicase A; double- 90.9 0.15 5E-06 42.4 3.2 40 294-352 6-46 (99)
39 1uil_A Double-stranded RNA-bin 88.2 0.25 8.7E-06 41.9 2.7 35 297-350 29-64 (113)
40 1ztd_A Hypothetical protein PF 86.8 3 0.0001 35.4 8.3 89 186-294 11-103 (133)
41 1qu6_A Protein kinase PKR; dsR 83.2 0.59 2E-05 42.3 2.7 38 297-352 16-54 (179)
42 1x47_A DGCR8 protein; structur 82.9 0.64 2.2E-05 38.3 2.6 23 297-319 19-43 (98)
43 1whn_A Hypothetical protein ri 80.2 0.43 1.5E-05 41.4 0.6 26 292-317 24-51 (128)
44 1x48_A Interferon-induced, dou 80.0 0.9 3.1E-05 36.6 2.5 39 294-352 6-46 (88)
45 2ljh_A Double-stranded RNA-spe 79.0 0.7 2.4E-05 39.3 1.5 34 297-352 40-74 (114)
46 3p1x_A Interleukin enhancer-bi 74.3 2.9 9.8E-05 32.5 3.8 38 297-353 7-45 (75)
47 2b7v_A Double-stranded RNA-spe 65.7 3.2 0.00011 31.6 2.3 33 299-353 10-42 (71)
48 2yt4_A Protein DGCR8; DSRBD, R 49.8 8.5 0.00029 36.2 2.7 23 297-319 25-49 (232)
49 2l3j_A Double-stranded RNA-spe 34.8 13 0.00044 35.0 1.4 37 295-353 162-199 (236)
50 2l3j_A Double-stranded RNA-spe 33.7 27 0.00092 32.7 3.4 43 294-355 4-47 (236)
51 1v18_B APC protein, adenomatou 29.3 20 0.00069 25.4 1.2 22 10-31 14-35 (47)
52 2yt4_A Protein DGCR8; DSRBD, R 28.8 18 0.00061 34.0 1.2 37 294-349 130-170 (232)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=100.00 E-value=1.5e-40 Score=365.60 Aligned_cols=185 Identities=15% Similarity=0.112 Sum_probs=141.7
Q ss_pred hccCcccccccccc------cccCCCCccccccchhhhHHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCC
Q 013554 101 FLKSPQLSLKSFPL------LSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPF 174 (441)
Q Consensus 101 ~l~~p~~~l~~~p~------~~~~lPs~~~~~~~~~~~~~~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S 174 (441)
++..+-|.+..+|. ...++|+++||+++..... ..+++ .|.+ ...++..+++|+|+++
T Consensus 243 ~L~PELC~vt~Lp~sl~~~~~~~~lPsil~rie~ll~a~---~al~~----~~p~---------~~~i~~~~leAlT~~~ 306 (756)
T 2qvw_A 243 FLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTI---CALDK----SFPD---------CGRIGGERYFAITAGL 306 (756)
T ss_dssp EECTTTCEECCTTSCTTHHHHHTTHHHHHHHHHHHHHHH---HHHGG----GSCC---------CSCCHHHHHHHHHHHH
T ss_pred eeCHHHheeecCchhHHHHHHHHHhHHHHHHHHHHHHHH---HHHHh----cCCc---------ccccCHHHHHHHhhhh
Confidence 34444445555552 2357999999997643221 22322 3332 1223567778888776
Q ss_pred ccccccc---------------cCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHcC
Q 013554 175 CERNKAR---------------HVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS 239 (441)
Q Consensus 175 ~~~~~~~---------------~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lg 239 (441)
+..+... ....||||||||||+||+++++++||.+||+++||+||.+|+++|||++|+++|+++|
T Consensus 307 ~~~~g~~~~~~~~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lg 386 (756)
T 2qvw_A 307 RLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLG 386 (756)
T ss_dssp BCSCCBTTBSBTTEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred hhhhccccchhhhhhhcccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcC
Confidence 6432000 0014899999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCchhhhhhccCCCChHHhHHHHHHHHHHHh-CCHHHHHHHHHHhhCCCCCC-----------Cc-hHHHHhhc
Q 013554 240 LQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLC-FGFPEVYRVLFEVFGMDPED-----------KE-CQPKLRRQ 306 (441)
Q Consensus 240 L~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD-~G~~~a~~fv~~~~~~~i~~-----------Kt-Lqel~q~~ 306 (441)
|++||+.++++. .+++++||+|||+|||||+| +|++.|++|+.+++.+.++. |+ |||++|.+
T Consensus 387 L~~~l~~~~~e~-----~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~ 461 (756)
T 2qvw_A 387 LPQLAEFSNNLV-----AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGE 461 (756)
T ss_dssp CTTTCBCCSCC-------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSC
T ss_pred hHHHhccCCCCC-----CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhcc
Confidence 999999998764 36899999999999999999 99999999999999765543 67 99999876
No 2
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=5.4e-39 Score=311.97 Aligned_cols=179 Identities=20% Similarity=0.285 Sum_probs=131.4
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 013554 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (441)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~e 215 (441)
+..++++|||+|+| +.||.+||||+||.++ .||||||||||+||+++|+++||.+||+.++
T Consensus 28 l~~le~~lgy~F~~-------------~~LL~~AlTH~S~~~~------~~neRLefLGDavL~~~v~~~L~~~~p~~~e 88 (248)
T 3n3w_A 28 IEKLEQSLTYEFKD-------------KNLLIHALTHKSFKKS------YNNERLEFLGDAVLDLVVGEYLFHKFAKDAE 88 (248)
T ss_dssp HHHHHHHHTCCCSS-------------HHHHHHHTBCTTSBTT------BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHHCCCCCC-------------HHHHHHHhcCcCCCCC------CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 67899999999998 8999999999999763 6999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCCCC
Q 013554 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295 (441)
Q Consensus 216 G~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~i~ 295 (441)
|.|+.+|+.+|||++|+.+|+++||+++|+.++++...+++.+++++||+|||+|||||+|+|++.|++||.+++.+.++
T Consensus 89 g~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e~~~~g~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~ 168 (248)
T 3n3w_A 89 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFP 168 (248)
T ss_dssp CCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887766677789999999999999999999999999999999854432
Q ss_pred ----------CCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 296 ----------DKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 296 ----------~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
.|+ |||++|++ ...|.|++++.+|+ +|.+.|.+.|..+
T Consensus 169 ~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp------------------~h~~~F~v~v~v~ 218 (248)
T 3n3w_A 169 QIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGP------------------DHLKQFEIALMLD 218 (248)
T ss_dssp --------------------------------------------------------------------
T ss_pred HhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCC------------------CCCceEEEEEEEC
Confidence 277 99999988 67789999988883 5777787766543
No 3
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=7.4e-38 Score=304.21 Aligned_cols=188 Identities=21% Similarity=0.316 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccc---CCCCchHHHHHHHHHHHHHHHHHHHhh
Q 013554 133 DEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARH---VRAGHSRLCFLGQFVLELAFCEFFLQR 209 (441)
Q Consensus 133 ~~~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~---~~~nyERLEFLGDaVLkl~vs~~Ly~~ 209 (441)
...+..|+++|||+|+| +.||.+||||+||.++.... ...||||||||||+||+++|+++||.+
T Consensus 18 ~~~~~~l~~~lgy~f~~-------------~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~ 84 (252)
T 1o0w_A 18 RKIVEEFQKETGINFKN-------------EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKK 84 (252)
T ss_dssp HHHHHHHHHHHCCCCSS-------------HHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-------------HHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999998 89999999999997642100 013899999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHh
Q 013554 210 YPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEV 289 (441)
Q Consensus 210 ~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~ 289 (441)
||+.++|.|+.+|+.+|||++|+.+|+++||++||+.++++...+++..++++||+|||+|||||+|+|++.|++||.++
T Consensus 85 ~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 164 (252)
T 1o0w_A 85 YPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQE 164 (252)
T ss_dssp CTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhhhcCCCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887766667789999999999999999999999999999988
Q ss_pred hCCC----------CCCCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 290 FGMD----------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 290 ~~~~----------i~~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
+.+. .+.|+ ||||+|++ ...|.|++++++|+ +|.+.|.+.|..+
T Consensus 165 ~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp------------------~h~~~F~v~v~v~ 220 (252)
T 1o0w_A 165 FEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKN------------------DGDRIFVVEVRVN 220 (252)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECC------------------TTSCEEEEEEEET
T ss_pred HHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCC------------------CCCCeEEEEEEEC
Confidence 7432 23377 99999998 67899999998883 6777887766443
No 4
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=2.6e-37 Score=294.46 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=154.4
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 013554 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (441)
Q Consensus 135 ~l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~ 214 (441)
.+..++++|||+|+| +.||.+||||+||.++ .||||||||||+||+++|+++||.+||+.+
T Consensus 3 ~~~~l~~~lg~~f~~-------------~~ll~~AlTh~S~~~~------~~nerLefLGDavL~~~v~~~L~~~~p~~~ 63 (221)
T 2nug_A 3 MLEQLEKKLGYTFKD-------------KSLLEKALTHVSYSKK------EHYETLEFLGDALVNFFIVDLLVQYSPNKR 63 (221)
T ss_dssp CHHHHHHHHTCCCSS-------------HHHHHHHHBCTTTCSS------SCSHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHhCCCcCC-------------HHHHHHHhCCCCCCCC------CCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 356799999999998 8999999999999753 589999999999999999999999999999
Q ss_pred hhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHH--HHHHHHHhhCC
Q 013554 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE--VYRVLFEVFGM 292 (441)
Q Consensus 215 eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~--a~~fv~~~~~~ 292 (441)
+|.|+.+|+.+|||++|+.+|+++||++||+.++++.. ++++||+|||+|||||+|+|++. |++|+.+++.+
T Consensus 64 ~g~Ls~~r~~lV~~~~la~~a~~l~l~~~l~~~~~~~~------~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~ 137 (221)
T 2nug_A 64 EGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKIN------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKE 137 (221)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTTGGGTCBSCTTCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHcChHHhhccCCCccc------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876532 78999999999999999999999 99999888743
Q ss_pred CC-----------CCCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 293 DP-----------EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 293 ~i-----------~~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
.+ +.|+ |||++|++ ...|.|++++++|+ +|.+.|.+.|..+
T Consensus 138 ~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~------------------~h~~~F~v~v~v~ 191 (221)
T 2nug_A 138 DILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP------------------HHKKKFIVEAKIK 191 (221)
T ss_dssp HHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESC------------------GGGCEEEEEEEET
T ss_pred HHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCC------------------CCCceEEEEEEEC
Confidence 22 2267 99999998 67799999999993 6777888766443
No 5
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3e-37 Score=297.86 Aligned_cols=181 Identities=23% Similarity=0.272 Sum_probs=129.3
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 013554 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (441)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~e 215 (441)
+..++++|||+| | ++||.+||||+||.+++ ....||||||||||+||+++|+++||.+||+.++
T Consensus 7 l~~l~~~lgy~f-~-------------~~ll~~AlTH~S~~~~~--~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~ 70 (242)
T 2a11_A 7 RQPLLDALGVDL-P-------------DELLSLALTHRSYAYEN--GGLPTNERLEFLGDAVLGLTITDALFHRHPDRSE 70 (242)
T ss_dssp CHHHHHHHTSCC-C-------------HHHHHHHTBCHHHHHHT--TSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCH
T ss_pred HHHHHHHHCCCC-C-------------HHHHHHHhCCcCccccC--CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 467899999999 8 89999999999997542 2347999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCcchHHHHHHHc---CCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCC
Q 013554 216 APMRERVFGLIGRRNLPKWIKAA---SLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM 292 (441)
Q Consensus 216 G~Ls~~Rs~LVsN~~La~lA~~l---gL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~ 292 (441)
|.||.+|+.+|||++|+.+|+++ ||++||+.++++...+++.+++++||+|||+|||||+|+|++.|++||.+++.+
T Consensus 71 g~Ls~~r~~lV~~~~la~~a~~l~~~gL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~ 150 (242)
T 2a11_A 71 GDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGP 150 (242)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhhhhChHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999887666667789999999999999999999999999999988733
Q ss_pred C----------CCCCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 293 D----------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 293 ~----------i~~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
. .+.|+ ||||+|++ ...|.|++++ +|+ +|.+.|.+.|..+
T Consensus 151 ~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~Gp------------------~h~~~F~v~v~v~ 202 (242)
T 2a11_A 151 LLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS-TGP------------------DHDKEFTAVVVVM 202 (242)
T ss_dssp HHHHTTC----------------------------------------------------------------
T ss_pred HHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEec-cCC------------------CCCCeEEEEEEEC
Confidence 1 23378 99999988 6789999887 772 6777787766443
No 6
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=4.7e-36 Score=276.34 Aligned_cols=141 Identities=21% Similarity=0.335 Sum_probs=132.6
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 013554 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (441)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~e 215 (441)
+.+++++|||+|+| +.|+.+||||+||.++ .+|||||||||+||+++++++||.+||+.++
T Consensus 28 l~~le~~lgy~F~d-------------~~LL~~AlTH~S~~~~------~~neRLEfLGDaVL~l~vs~~L~~~~P~~~e 88 (170)
T 3o2r_A 28 IEKLEQSLTYEFKD-------------KNLLIHALTHKSFKKS------YNNERLEFLGDAVLDLVVGEYLFHKFAKDAE 88 (170)
T ss_dssp HHHHHHHHTCCCSS-------------HHHHHHHTBCTTSSTT------CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHhCCCCCC-------------HHHHHHHhcCCCCCCC------cchHHHHHHHHHHHHHHHHHHHHHhCCCCCh
Confidence 67899999999998 8999999999999763 6999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCCCC
Q 013554 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295 (441)
Q Consensus 216 G~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~i~ 295 (441)
|.|+.+|+.+|||++|+.+|+++||+++|+.++++...+++.++|++||+|||+|||||+|+|++.|++||.+++.+.++
T Consensus 89 g~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~~~~~~~~~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~~~~~~ 168 (170)
T 3o2r_A 89 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFP 168 (170)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCcchhhcCCCCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987766677789999999999999999999999999999999876553
No 7
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=1.3e-34 Score=282.51 Aligned_cols=155 Identities=17% Similarity=0.261 Sum_probs=133.2
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 013554 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (441)
Q Consensus 136 l~~l~~~LGy~F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~e 215 (441)
+..++++|||+|+| +.||.+||||+||.++. ...||||||||||+||+++|+++||.+||++++
T Consensus 15 l~~le~~lgy~F~~-------------~~LL~~AlTH~S~~~~~---~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~ 78 (265)
T 3c4b_A 15 FETFEKKINYRFKN-------------KAYLLQAFTHASYHYNT---ITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 78 (265)
T ss_dssp HHHHHHHHTCCCSS-------------HHHHHHHHBCTTCTTCC---SSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCH
T ss_pred HHHHHHHhCCccCC-------------HHHHHHHhcCcCcCCCC---CCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCH
Confidence 56799999999998 89999999999997642 346999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCcchHHHHHHHcCCccccccCchh--------------------------------hhhhccCCCChHH
Q 013554 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEM--------------------------------DRLIRKEREPPVK 263 (441)
Q Consensus 216 G~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~--------------------------------~~~~~~~~~K~lA 263 (441)
|.||.+|+.+|||.+|+.+|+++||++||+..... ...+++..+|++|
T Consensus 79 g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~la 158 (265)
T 3c4b_A 79 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMG 158 (265)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHH
Confidence 99999999999999999999999999999853211 1123445789999
Q ss_pred hHHHHHHHHHHHhCCH--HHHHHHHHHhhCCCCC------CCc-hHHHHhhc
Q 013554 264 SVFWALFGAIYLCFGF--PEVYRVLFEVFGMDPE------DKE-CQPKLRRQ 306 (441)
Q Consensus 264 DvfEALIGAIYlD~G~--~~a~~fv~~~~~~~i~------~Kt-Lqel~q~~ 306 (441)
|+|||+|||||+|+|+ +.|++||.+++.+.++ .|+ +|++.+..
T Consensus 159 D~~EAliGAiylD~G~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~ 210 (265)
T 3c4b_A 159 DIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEME 210 (265)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHC
T ss_pred HHHHHHhhheeeecCCCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhc
Confidence 9999999999999998 8899999988865432 377 88888754
No 8
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=7.2e-34 Score=287.47 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=120.9
Q ss_pred HHHHHHhCCC-CCCCCCCCCCCCCCChHHHHHHHhcCCCccccccc-----cCCCCchHHHHHHHHHHHHHHHHHHHhhC
Q 013554 137 LEAKQALGYS-LEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKAR-----HVRAGHSRLCFLGQFVLELAFCEFFLQRY 210 (441)
Q Consensus 137 ~~l~~~LGy~-F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~~-----~~~~nyERLEFLGDaVLkl~vs~~Ly~~~ 210 (441)
..++++|||+ |+| ++||.+||||+||.++... ....+|||||||||+||+++++++||.+|
T Consensus 86 ~~lE~~igy~~F~d-------------~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~ 152 (341)
T 3rv0_A 86 TDVDMFIKYPVVYD-------------ENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRF 152 (341)
T ss_dssp CTTGGGCSSCCCSC-------------HHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhcCCCCcCC-------------HHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3578999999 998 8999999999999864211 12468999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhh-hccCCCChHHhHHHHHHHHHHHhC---CHHHHHHHH
Q 013554 211 PRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL-IRKEREPPVKSVFWALFGAIYLCF---GFPEVYRVL 286 (441)
Q Consensus 211 P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~-~~~~~~K~lADvfEALIGAIYlD~---G~~~a~~fv 286 (441)
|+++||.|+.+|+.+|||.+|+.+|+++||+++|+++.+.... ++..+++++||+|||+|||||+|+ |++.|++||
T Consensus 153 P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi 232 (341)
T 3rv0_A 153 PSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWL 232 (341)
T ss_dssp TTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHH
T ss_pred CCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHH
Confidence 9999999999999999999999999999999999965332211 122357899999999999999998 999999999
Q ss_pred HHhhCCC--------------CCCCc-hHHHHhhcC--CCcceEEEeeeC
Q 013554 287 FEVFGMD--------------PEDKE-CQPKLRRQL--EDVDYVSVEFEG 319 (441)
Q Consensus 287 ~~~~~~~--------------i~~Kt-Lqel~q~~~--~~p~Y~~i~~~G 319 (441)
.+++.+. .+.|+ ||||+|+++ ..|.|++++++|
T Consensus 233 ~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~G 282 (341)
T 3rv0_A 233 EELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMP 282 (341)
T ss_dssp HHHTHHHHHCGGGC------------------------------------
T ss_pred HHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccC
Confidence 8876321 23388 999999873 346999888777
No 9
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.97 E-value=2.2e-32 Score=265.10 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=117.8
Q ss_pred HHHHHHhCCC-CCCCCCCCCCCCCCChHHHHHHHhcCCCcccccc-----ccCCCCchHHHHHHHHHHHHHHHHHHHhhC
Q 013554 137 LEAKQALGYS-LEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKA-----RHVRAGHSRLCFLGQFVLELAFCEFFLQRY 210 (441)
Q Consensus 137 ~~l~~~LGy~-F~~~~~~~~~~~~~~~~~LLleALTH~S~~~~~~-----~~~~~nyERLEFLGDaVLkl~vs~~Ly~~~ 210 (441)
..+++.|||+ |+| +.||.+||||+||.++.. .....+|||||||||+||+++++++||.+|
T Consensus 86 ~~lE~~lgY~~F~d-------------~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~ 152 (246)
T 3rv1_A 86 TDVDMFIKYPVVYD-------------ENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRF 152 (246)
T ss_dssp CGGGGGCSSCCCSC-------------HHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCcCC-------------HHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3578899999 998 899999999999976421 113579999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhh-hccCCCChHHhHHHHHHHHHHHhC---CHHHHHHHH
Q 013554 211 PRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL-IRKEREPPVKSVFWALFGAIYLCF---GFPEVYRVL 286 (441)
Q Consensus 211 P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~-~~~~~~K~lADvfEALIGAIYlD~---G~~~a~~fv 286 (441)
|+++||.|+.+|+.+|||++|+.+|+++||+++|+++.+.... .+..+++++||+|||+|||||+|+ |++.|++|+
T Consensus 153 P~~~eG~Lt~lRs~lVsn~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l 232 (246)
T 3rv1_A 153 PSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWL 232 (246)
T ss_dssp TTCCHHHHHHHHHHHHSHHHHHHHHHHTTSHHHHCSSCC-----------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHH
T ss_pred CCCChhHHHHHHHHHhCHHHHHHHHHHCCcHHHHhhcCCHhhhccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999965332211 122468999999999999999998 499999999
Q ss_pred HHhhCCCC
Q 013554 287 FEVFGMDP 294 (441)
Q Consensus 287 ~~~~~~~i 294 (441)
.+++.+.+
T Consensus 233 ~~L~~p~l 240 (246)
T 3rv1_A 233 EELSEKKL 240 (246)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHH
Confidence 99986554
No 10
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.95 E-value=8e-28 Score=264.62 Aligned_cols=145 Identities=16% Similarity=0.100 Sum_probs=124.3
Q ss_pred HHHHHHHHhCCCCCCC----------CCCCCCCCCCCh---HHHHHHHhcCCCccccccccCCCCchHHHHHHHHHHHHH
Q 013554 135 YLLEAKQALGYSLEPS----------DQLGDDNPAKHF---DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELA 201 (441)
Q Consensus 135 ~l~~l~~~LGy~F~~~----------~~~~~~~~~~~~---~~LLleALTH~S~~~~~~~~~~~nyERLEFLGDaVLkl~ 201 (441)
.+..++++|||+|+|+ .++...-+-... ++||.+||||+| |||||||||+||+++
T Consensus 594 ~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S------------neRLEfLGDaVL~l~ 661 (756)
T 2qvw_A 594 VLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV------------YQKLELLGDAFLKCS 661 (756)
T ss_dssp HHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG------------GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc------------chHHHHHHHHHHHHH
Confidence 4788999999999971 000000000011 589999999997 799999999999999
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHcC--CccccccCchhhhhhccCCCChHHhHHHHHHHHHHHhCCH
Q 013554 202 FCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS--LQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279 (441)
Q Consensus 202 vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lg--L~~~I~~~~~~~~~~~~~~~K~lADvfEALIGAIYlD~G~ 279 (441)
++++||.+||+++||.||.+|+.+|||++|+.+|+++| |++||+.++++.. .++|++||+|||+|||||+|+|+
T Consensus 662 vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~~----~~~kilaD~~EAliGAiylD~G~ 737 (756)
T 2qvw_A 662 LALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQ----PDSKVYGDTFEAILAAILLACGE 737 (756)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTCC----TTCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhhc----CCccHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999 9999999877543 46899999999999999999999
Q ss_pred HHHHHHHHHhhCCCCC
Q 013554 280 PEVYRVLFEVFGMDPE 295 (441)
Q Consensus 280 ~~a~~fv~~~~~~~i~ 295 (441)
+.|++|+.+++.+.++
T Consensus 738 ~~a~~~v~~~~~~~l~ 753 (756)
T 2qvw_A 738 EAAGAFVREHVLPQVV 753 (756)
T ss_dssp HHHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999976654
No 11
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.87 E-value=3.2e-22 Score=178.19 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=98.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHc----CCc----cccccCchhhhhhc
Q 013554 184 RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAA----SLQ----NLIFPFDEMDRLIR 255 (441)
Q Consensus 184 ~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~l----gL~----~~I~~~~~~~~~~~ 255 (441)
..|.+||||||||||+++|+++||.+ |..++|+||++|+.+||.++++.+++++ +|. ++++.|+++...++
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~~~ 87 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTV 87 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSCC
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccCCC
Confidence 46899999999999999999999999 8889999999999999999999999999 998 79999888765555
Q ss_pred cCCCCh----HHhHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 013554 256 KEREPP----VKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (441)
Q Consensus 256 ~~~~K~----lADvfEALIGAIYlD~G~~~a~~fv~~~~ 290 (441)
+.+..+ +||+|||||||+|+|+|++.++.|+..++
T Consensus 88 ~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~~ 126 (138)
T 1u61_A 88 PKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 126 (138)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667788 99999999999999999999999998776
No 12
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.81 E-value=3.8e-20 Score=164.58 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=90.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHhCcchHHHHHHHcC--Cc----cccccCchhhhhhccC
Q 013554 184 RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS--LQ----NLIFPFDEMDRLIRKE 257 (441)
Q Consensus 184 ~~nyERLEFLGDaVLkl~vs~~Ly~~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lg--L~----~~I~~~~~~~~~~~~~ 257 (441)
..|.+|||||||||++++|+++||.+ |. ++|+||+.|+.+||.+.++.++.+++ |. .+++.|++.....+..
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~~~~~~k 89 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSNIKTFPR 89 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--CCSCCS
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcccccCCCCCC
Confidence 46899999999999999999999999 88 99999999999999999999999996 55 4555554433222333
Q ss_pred CCCh----HHhHHHHHHHHHHHhCCHHHHHHHHHHhhCCCC
Q 013554 258 REPP----VKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP 294 (441)
Q Consensus 258 ~~K~----lADvfEALIGAIYlD~G~~~a~~fv~~~~~~~i 294 (441)
+.++ +||.|||||||+|+|+|++.+..|+...+...+
T Consensus 90 ~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~~~~~ 130 (137)
T 2gsl_A 90 SCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGEL 130 (137)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4554 999999999999999999999999988875433
No 13
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.41 E-value=4.8e-14 Score=137.12 Aligned_cols=55 Identities=22% Similarity=0.310 Sum_probs=45.5
Q ss_pred hhHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 365 ~~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
...||+.|||+|++++++ .| |||||||.. ++..+||||||||||||||++|+.|.
T Consensus 15 l~~le~~lgy~F~~~~LL--------------~~-AlTH~S~~~-~~~~~~neRLEfLGDaVL~l~v~~~L 69 (265)
T 3c4b_A 15 FETFEKKINYRFKNKAYL--------------LQ-AFTHASYHY-NTITDCYQRLEFLGDAILDYLITKHL 69 (265)
T ss_dssp HHHHHHHHTCCCSSHHHH--------------HH-HHBCTTCTT-CCSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccCCHHHH--------------HH-HhcCcCcCC-CCCCCchHhHHHHhHHHHHHHHHHHH
Confidence 457999999999976532 44 999999954 33467999999999999999999875
No 14
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.31 E-value=4.1e-13 Score=123.32 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=44.4
Q ss_pred ChhHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 364 SRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 364 ~~~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
+...||+.+||+|++++++ .| ||||+||.. .++||||||||||||+++|+.|.
T Consensus 27 ~l~~le~~lgy~F~d~~LL--------------~~-AlTH~S~~~----~~~neRLEfLGDaVL~l~vs~~L 79 (170)
T 3o2r_A 27 NIEKLEQSLTYEFKDKNLL--------------IH-ALTHKSFKK----SYNNERLEFLGDAVLDLVVGEYL 79 (170)
T ss_dssp CHHHHHHHHTCCCSSHHHH--------------HH-HTBCTTSST----TCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHH--------------HH-HhcCCCCCC----CcchHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999976532 34 999999963 27999999999999999999874
No 15
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.25 E-value=1.3e-12 Score=126.61 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=43.9
Q ss_pred hhHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 365 ~~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
...||+.+||+|++++++ .| ||||+||.. ..+|||||||||||||++|+.|.
T Consensus 28 l~~le~~lgy~F~~~~LL--------------~~-AlTH~S~~~----~~~neRLefLGDavL~~~v~~~L 79 (248)
T 3n3w_A 28 IEKLEQSLTYEFKDKNLL--------------IH-ALTHKSFKK----SYNNERLEFLGDAVLDLVVGEYL 79 (248)
T ss_dssp HHHHHHHHTCCCSSHHHH--------------HH-HTBCTTSBT----TBCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHH--------------HH-HhcCcCCCC----CCCcHHHHHHHHHHHHHHHHHHH
Confidence 568999999999976542 34 999999963 27999999999999999999874
No 16
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.23 E-value=1.9e-12 Score=122.84 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=43.1
Q ss_pred hhHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 365 ~~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
...|++.+||+|++++++ .| ||||+||.. ..+|||||||||||||++|+.|.
T Consensus 4 ~~~l~~~lg~~f~~~~ll--------------~~-AlTh~S~~~----~~~nerLefLGDavL~~~v~~~L 55 (221)
T 2nug_A 4 LEQLEKKLGYTFKDKSLL--------------EK-ALTHVSYSK----KEHYETLEFLGDALVNFFIVDLL 55 (221)
T ss_dssp HHHHHHHHTCCCSSHHHH--------------HH-HHBCTTTCS----SSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCCHHHH--------------HH-HhCCCCCCC----CCCchHHHHHHHHHHHHHHHHHH
Confidence 457999999999876432 34 999999953 25899999999999999999874
No 17
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.21 E-value=1.8e-12 Score=125.61 Aligned_cols=56 Identities=21% Similarity=0.279 Sum_probs=42.2
Q ss_pred hhHHHHHhCCC-cccCCChhhHHHHHHhhhhhcccccccCCCCCCCC-------CCCCChhhhhhhcchhhhhhhhhcc
Q 013554 365 RPQVMQTLGYP-LVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFE-------HPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 365 ~~~le~~lgY~-F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~-------~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
...||+++||+ |++++++ .| ||||+||.... ....+||||||||||||+++||.|+
T Consensus 85 ~~~lE~~lgY~~F~d~~LL--------------~~-ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L 148 (246)
T 3rv1_A 85 NTDVDMFIKYPVVYDENLE--------------NL-AFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIV 148 (246)
T ss_dssp CCGGGGGCSSCCCSCHHHH--------------HH-TTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCcCCHHHH--------------HH-HHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 35799999999 9986542 44 99999995321 1357999999999999999999874
No 18
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.18 E-value=1.5e-12 Score=125.23 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=44.4
Q ss_pred ChhHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCCChhhhhhhcchhhhhhhhhcc
Q 013554 364 SRPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 364 ~~~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
....|++.+||+| +++++ .+ |||||||.......++|||||||||||||++|+.|.
T Consensus 6 ~l~~l~~~lgy~f-~~~ll--------------~~-AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L 61 (242)
T 2a11_A 6 SRQPLLDALGVDL-PDELL--------------SL-ALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDAL 61 (242)
T ss_dssp CCHHHHHHHTSCC-CHHHH--------------HH-HTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-CHHHH--------------HH-HhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999 75432 34 999999943222467999999999999999999874
No 19
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.11 E-value=2.3e-12 Score=124.89 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=43.4
Q ss_pred hhHHHHHhCCCcccCCChhhHHHHHHhhhhhcccccccCCCCCCCCCCCC-----Chhhhhhhcchhhhhhhhhcc
Q 013554 365 RPQVMQTLGYPLVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEHPRF-----CFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 365 ~~~le~~lgY~F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~~~~-----cYqRLEFLGDavLD~~~~~~~ 435 (441)
...|++.|||+|++++++ .| |||||||.......+ +||||||||||||+++|+.|.
T Consensus 21 ~~~l~~~lgy~f~~~~LL--------------~~-AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L 81 (252)
T 1o0w_A 21 VEEFQKETGINFKNEELL--------------FR-ALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEIL 81 (252)
T ss_dssp HHHHHHHHCCCCSSHHHH--------------HH-HHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHH--------------HH-HhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999876432 34 999999942111123 899999999999999999874
No 20
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.07 E-value=1.6e-11 Score=124.23 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=43.8
Q ss_pred hhHHHHHhCCC-cccCCChhhHHHHHHhhhhhcccccccCCCCCCCCC-------CCCChhhhhhhcchhhhhhhhhcc
Q 013554 365 RPQVMQTLGYP-LVVQDRIPEITEARNIELGLGLQLCFLHPSKYKFEH-------PRFCFERLEYVGQKIQVKSYSCFC 435 (441)
Q Consensus 365 ~~~le~~lgY~-F~~~~~~~~~~~a~~~~~~l~lq~AftHpS~~~~~~-------~~~cYqRLEFLGDavLD~~~~~~~ 435 (441)
...||+++||+ |++++++ .| ||||+||..... ..++||||||||||||+++||.|.
T Consensus 85 ~~~lE~~igy~~F~d~~LL--------------~~-ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L 148 (341)
T 3rv0_A 85 NTDVDMFIKYPVVYDENLE--------------NL-AFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIV 148 (341)
T ss_dssp CCTTGGGCSSCCCSCHHHH--------------HH-HHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhcCCCCcCCHHHH--------------HH-HhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 45799999999 9986542 34 999999953211 246999999999999999999874
No 21
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=94.13 E-value=0.03 Score=44.04 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=30.7
Q ss_pred Cc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 297 KE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 297 Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
|+ ||||+|++ ...|.|++++++|+ +|.+.|.+.|..+
T Consensus 7 Kt~LqE~~q~~~~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~ 45 (76)
T 3adj_A 7 KNLLQEYAQKMNYAIPLYQCQKVETL------------------GRVTQFTCTVEIG 45 (76)
T ss_dssp HHHHHHHHHTTTCCCCEEEEEEEECS------------------SSCEEEEEEEEET
T ss_pred HHHHHHHHHHhCCCCCeEEEeeccCC------------------CCCCcEEEEEEEC
Confidence 67 99999998 66799999999993 7888898876443
No 22
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=94.11 E-value=0.03 Score=44.98 Aligned_cols=39 Identities=10% Similarity=-0.069 Sum_probs=32.0
Q ss_pred CCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 295 ~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
+.|+ ||||+|+++..|.|++++++|+ +|.+.|.+.|..+
T Consensus 9 d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~ 48 (84)
T 2dix_A 9 TPIQVLHEYGMKTKNIPVYECERSDVQ------------------IHVPTFTFRVTVG 48 (84)
T ss_dssp CHHHHHHHHHHHTTCCCEEEEEEEECS------------------SSSCEEEEEEEET
T ss_pred CHHHHHHHHHHHcCCCCeEEEEEeECC------------------CCCCeEEEEEEEC
Confidence 4478 9999999877899999999993 7888998876443
No 23
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=94.06 E-value=0.03 Score=43.01 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=30.1
Q ss_pred Cc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 297 KE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 297 Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
++ |||++|++ ...|.|++++++|+ +|.+.|.+.|..+
T Consensus 3 ~s~LqE~~q~~~~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~ 41 (69)
T 1di2_A 3 VGSLQELAVQKGWRLPEYTVAQESGP------------------PHKREFTITCRVE 41 (69)
T ss_dssp HHHHHHHHHHHTCCCCEEEEEEEESC------------------GGGCEEEEEEEET
T ss_pred HHHHHHHHHHcCCCCCEEEEEEeECC------------------CCCCeEEEEEEEC
Confidence 45 99999998 66799999999993 7888898876443
No 24
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=93.64 E-value=0.046 Score=42.52 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=32.8
Q ss_pred CCCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 294 i~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
.+.|+ ||||+|. ...|.|++++++|+ +|.+.|.+.|..+.
T Consensus 4 ~d~Ks~Lqe~~q~-~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~g 44 (73)
T 2b7t_A 4 VLPKNALMQLNEI-KPGLQYMLLSQTGP------------------VHAPLFVMSVEVNG 44 (73)
T ss_dssp SSSHHHHHHHHHH-CSCCEEEEEEEECS------------------SSSCEEEEEEESSS
T ss_pred CCHHHHHHHHHcC-CCCceEEEEEeeCC------------------CCCCeEEEEEEECC
Confidence 45688 9999995 78899999999993 79999988775543
No 25
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=93.60 E-value=0.041 Score=42.79 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=30.8
Q ss_pred CCCCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 294 PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 294 i~~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
.+.|+ |||++|++ ...|.|+++++ |+ +|.+.|.+.|..+
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp------------------~h~~~F~~~v~v~ 43 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKE-GP------------------SHKSLFQSTVILD 43 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEE-SS------------------TTSCEEEEEEEET
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeE-CC------------------CCCCeEEEEEEEC
Confidence 34578 99999998 66799999985 83 7888998877543
No 26
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=93.57 E-value=0.043 Score=44.67 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=31.8
Q ss_pred CCCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 295 EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 295 ~~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
+.|+ ||||+|++ ...|.|++++++|+ +|.+.|.+.|..+
T Consensus 7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp------------------~H~~~F~~~v~v~ 47 (89)
T 1uhz_A 7 GPISRLAQIQQARKEKEPDYILLSERGM------------------PRRREFVMQVKVG 47 (89)
T ss_dssp CHHHHHHHHHHHTTSCCCEEEEEEEESC------------------STTCEEEEEEEET
T ss_pred CHHHHHHHHHHHhCCCCCeEEEEEeECC------------------CCCCeEEEEEEEC
Confidence 4478 99999998 66799999999993 7888998876443
No 27
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=93.51 E-value=0.048 Score=43.98 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=31.7
Q ss_pred CCCc-hHHHHhh-----c-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 295 EDKE-CQPKLRR-----Q-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 295 ~~Kt-Lqel~q~-----~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
|.|+ ||||+|+ + ...|.|++++++|+ +|.+.|.+.|..+.
T Consensus 2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp------------------~H~~~F~v~V~v~g 48 (85)
T 2khx_A 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGP------------------SHARTYTVAVYFKG 48 (85)
T ss_dssp CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCS------------------SSCCCEEEEEEETT
T ss_pred CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECC------------------CCCCcEEEEEEECC
Confidence 4588 9999997 3 56899999999993 78889988775543
No 28
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=93.49 E-value=0.037 Score=45.01 Aligned_cols=39 Identities=23% Similarity=0.094 Sum_probs=28.5
Q ss_pred CCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 295 ~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
+.|+ ||||+|+++..|.|++++++|+ +|.+.|.++|..+
T Consensus 15 d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp------------------~H~~~F~~~v~v~ 54 (90)
T 3llh_A 15 TPISLLQEYGTRIGKTPVYDLLKAEGQ------------------AHQPNFTFRVTVG 54 (90)
T ss_dssp CHHHHHHHHHHHTTCCCEEEEEEEC-----------------------CCEEEEEEET
T ss_pred CHHHHHHHHHHhcCCCCEEEEEEeECC------------------CCCCcEEEEEEEC
Confidence 3478 9999998877899999999993 7888998877554
No 29
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=93.23 E-value=0.052 Score=44.10 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=31.7
Q ss_pred CCCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 295 EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 295 ~~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
+.|+ |||++|++ ...|.|++++++|+ +|.+.|.+.|..+
T Consensus 16 d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp------------------~H~~~F~~~v~v~ 56 (88)
T 3adl_A 16 HEVGALQELVVQKGWRLPEYTVTQESGP------------------AHRKEFTMTCRVE 56 (88)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEEEESC------------------TTSCEEEEEEEET
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEEeECC------------------CCCCeEEEEEEEC
Confidence 3488 99999998 66799999999993 7888898876443
No 30
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=93.05 E-value=0.039 Score=43.25 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=30.0
Q ss_pred CCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCC
Q 013554 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPP 350 (441)
Q Consensus 295 ~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~ 350 (441)
+.|+ |||++|+++..|.|++++++|+ +|.+.|.+.|..
T Consensus 8 d~ks~LqE~~q~~~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~i 46 (76)
T 1ekz_A 8 SPISQVHEIGIKRNMTVHFKVLREEGP------------------AHMKNFITACIV 46 (76)
T ss_dssp CHHHHHHHHHHHTTCCCEEEESSSCCS------------------SSCSCSSEEEEE
T ss_pred CHHHHHHHHHHHcCCCCEEEEEEeECC------------------CCCCcEEEEEEE
Confidence 3477 9999999944499999999993 788889876644
No 31
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=93.04 E-value=0.054 Score=44.05 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=30.7
Q ss_pred CCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCC
Q 013554 296 DKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPP 350 (441)
Q Consensus 296 ~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~ 350 (441)
.|+ ||||+|++ ...|.|++++++|+ +|.+.|.+.|..
T Consensus 18 ~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp------------------~h~~~F~~~v~i 56 (89)
T 2cpn_A 18 PVGALQELVVQKGWRLPEYTVTQESGP------------------AHRKEFTMTCRV 56 (89)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEECC------------------SSSCEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCeEEEEeeECC------------------CCCCeEEEEEEE
Confidence 377 99999998 66799999999993 788889887644
No 32
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=92.65 E-value=0.048 Score=46.88 Aligned_cols=40 Identities=15% Similarity=-0.037 Sum_probs=32.5
Q ss_pred CCCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 294 i~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
.|.|| ||||+|.....|.|++++. | | +|.+.|.+.|..+.
T Consensus 8 ~D~KT~LQE~~Q~~~~~P~Y~vv~~-G-------------P-----dH~k~F~v~V~i~g 48 (117)
T 1t4o_A 8 MNAKRQLYSLIGYASLRLHYVTVKK-P-------------T-----AVDPNSIVECRVGD 48 (117)
T ss_dssp TTHHHHHHHHHCCGGGCCEEEEEEC-C-------------C-----SSCCCEEEEEECTT
T ss_pred CCchHHHHHHHcCCCCCCEEEEeee-C-------------C-----CCCCeEEEEEEECC
Confidence 45589 9999999877899999986 8 3 89999998775544
No 33
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=92.61 E-value=0.08 Score=43.68 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=32.0
Q ss_pred CCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 295 ~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
+.|+ ||||+|++ ..|.|++++++|+ +|.+.|.+.|..+.
T Consensus 17 d~Kt~LqE~~Q~~-~~p~Y~~~~~~Gp------------------~H~~~F~~~v~v~g 56 (97)
T 2dmy_A 17 DLMNALMRLNQIR-PGLQYKLLSQSGP------------------VHAPVFTMSVDVDG 56 (97)
T ss_dssp SCTHHHHHHHHHS-CSCCCEEEEEESC------------------SSSCEEEEEEEETT
T ss_pred CHHHHHHHHHhcC-CCceEEEEEeeCC------------------CCCCeEEEEEEECC
Confidence 3488 99999996 7899999999993 78999988775543
No 34
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=92.43 E-value=0.068 Score=44.21 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=30.7
Q ss_pred Cc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 297 Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
|+ ||||+|+++..|.|++++++|+ +|.+.|.+.|..+
T Consensus 17 Kt~LqE~~Q~~~~~p~Y~~~~~~Gp------------------~H~~~F~v~v~i~ 54 (97)
T 1x49_A 17 MDKLNKYRQMHGVAITYKELSTSGP------------------PHDRRFTFQVLID 54 (97)
T ss_dssp HHHHHHHHHHHTCCEEEEEEEEESC------------------SSSCEEEEEEEES
T ss_pred HHHHHHHHHHcCCCCeEEEEEeeCC------------------CCCCcEEEEEEEC
Confidence 77 9999999955699999999993 7889998877544
No 35
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=92.31 E-value=0.044 Score=45.32 Aligned_cols=39 Identities=15% Similarity=-0.017 Sum_probs=31.1
Q ss_pred CCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 295 ~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
|.|| ||||+|.....|.|+++++ | | +|.+.|.+.|..+.
T Consensus 7 D~KT~LQE~~Q~~~~~p~Y~v~~~-G-------------p-----dH~k~F~v~v~i~~ 46 (94)
T 1t4n_A 7 NAKRQLYSLIGYASLRLHYVTVKK-P-------------T-----AVDPNSIVECRVGD 46 (94)
T ss_dssp HHHHHHHHHTCSSSSCCEEEECCC-C-------------S-----SSCCSEEEEEECSS
T ss_pred CchHHHHHHHcCCCCCCEEEEeee-C-------------C-----CCCCeEEEEEEECC
Confidence 4488 9999998877899999875 7 3 89999998775543
No 36
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=91.55 E-value=0.12 Score=42.38 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=32.3
Q ss_pred CCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 295 ~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
+.|+ ||||+|+++ .|.|++++++|+ +|.+.|.+.|..+.
T Consensus 15 ~~K~~LqEl~Qk~~-~p~Y~~v~~~Gp------------------~H~~~F~v~V~v~g 54 (91)
T 2l33_A 15 HGKNPVMELNEKRR-GLKYELISETGG------------------SHDKRFVMEVEVDG 54 (91)
T ss_dssp STTCHHHHHHHHCS-SCEEEEEEEEEC------------------SSCEEEEEEEEETT
T ss_pred CCCCHHHHHHHhCC-CCeEEEEEeeCC------------------CCCCeEEEEEEECC
Confidence 4578 999999988 999999999993 78899988775543
No 37
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=91.45 E-value=0.15 Score=42.49 Aligned_cols=40 Identities=23% Similarity=0.111 Sum_probs=30.3
Q ss_pred CCCCCc-hHHHHhhc-CCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCC
Q 013554 293 DPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPG 351 (441)
Q Consensus 293 ~i~~Kt-Lqel~q~~-~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~ 351 (441)
..+.|+ |||++|++ ...|.|+++++ |+ +|.+.|.+.|..+
T Consensus 16 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp------------------~H~~~F~~~V~v~ 57 (103)
T 2l2n_A 16 CYVFKSRLQEYAQKYKLPTPVYEIVKE-GP------------------SHKSLFQSTVILD 57 (103)
T ss_dssp ---CTTHHHHHHHHTTCCCCEEEEEEE-SC------------------SSSCEEEEEEEET
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeE-cC------------------CCCCeEEEEEEEC
Confidence 345588 99999999 66799999985 83 7889998877544
No 38
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=90.86 E-value=0.15 Score=42.37 Aligned_cols=40 Identities=15% Similarity=-0.016 Sum_probs=32.2
Q ss_pred CCCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 294 i~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
.+.|+ ||||+|++...|.|++ +++|+ +|.+.|.+.|..+.
T Consensus 6 ~d~Kt~LqE~~Qk~~~~P~Y~~-~~~Gp------------------~H~~~F~~~V~v~g 46 (99)
T 1whq_A 6 SGIKNFLYAWCGKRKMTPAYEI-RAVGN------------------KNRQKFMCEVRVEG 46 (99)
T ss_dssp CSSHHHHHHHHHHTTCCCEEEE-EEEEC------------------SSSEEEEEEEECTT
T ss_pred CCHHHHHHHHHHHCCCCCeEEE-eeecC------------------CCCCeEEEEEEECC
Confidence 45688 9999999977899999 88883 78899988775443
No 39
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=88.16 E-value=0.25 Score=41.86 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=29.3
Q ss_pred Cc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCC
Q 013554 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPP 350 (441)
Q Consensus 297 Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~ 350 (441)
|+ |||++|+++..|.|+ +++.|+ +|.+.|.+.|..
T Consensus 29 Kt~LqE~~Qk~~~~p~Y~-~~~~Gp------------------~H~~~F~~~V~v 64 (113)
T 1uil_A 29 KARLNQYFQKEKIQGEYK-YTQVGP------------------DHNRSFIAEMTI 64 (113)
T ss_dssp HHHHHHHHHHSCCCCCCE-EEEESC------------------STTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCeEE-EeeECC------------------CCCCcEEEEEEE
Confidence 78 999999994499999 788883 788999887755
No 40
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=86.78 E-value=3 Score=35.44 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=65.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHh--hCCCCChhhHHHHHHHHhCcchHHHHHHHcCCccccccCchhhhhhccCCCChHH
Q 013554 186 GHSRLCFLGQFVLELAFCEFFLQ--RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVK 263 (441)
Q Consensus 186 nyERLEFLGDaVLkl~vs~~Ly~--~~P~~~eG~Ls~~Rs~LVsN~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~K~lA 263 (441)
.-..|.-+||++++++++-.|-+ -+|.-. -|-|.+|+..-...||.+.+..++ ...-.
T Consensus 11 tdK~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~pR~D----------Kh~kG 70 (133)
T 1ztd_A 11 IDKGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLRRVD----------KHAKG 70 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCCGGG----------TTCHH
T ss_pred hcchHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcCCccc----------ccCcc
Confidence 45679999999999999988854 345422 367788887777888887772111 23458
Q ss_pred hHHHHHHHHHHHhCC--HHHHHHHHHHhhCCCC
Q 013554 264 SVFWALFGAIYLCFG--FPEVYRVLFEVFGMDP 294 (441)
Q Consensus 264 DvfEALIGAIYlD~G--~~~a~~fv~~~~~~~i 294 (441)
|+.||+|+-.|+.+- .+.|..++..-+..++
T Consensus 71 d~aEA~iAyAWleG~is~eEaveilk~nl~~dv 103 (133)
T 1ztd_A 71 DYAEALIAKAWLMGLISEREAVEIIKKNLYPEV 103 (133)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHhcCcHhh
Confidence 999999999999985 5678888877765444
No 41
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=83.21 E-value=0.59 Score=42.28 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=31.0
Q ss_pred Cc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 297 Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
|+ ||||+|+++..|.|++++++|+ +|.+.|.+.|..+.
T Consensus 16 ks~LqE~~q~~~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~g 54 (179)
T 1qu6_A 16 MEELNTYRQKQGVVLKYQELPNSGP------------------PHDRRFTFQVIIDG 54 (179)
T ss_dssp HHHHHHHHHHHTCCCEEEEEESCBT------------------TTBCCEEEEEESSS
T ss_pred HHHHHHHHHhCCCCCeEEEeeccCC------------------CCCCeEEEEEEECC
Confidence 77 9999999965699999988883 78889988775543
No 42
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=82.90 E-value=0.64 Score=38.29 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=20.7
Q ss_pred Cc-hHHHHhhc-CCCcceEEEeeeC
Q 013554 297 KE-CQPKLRRQ-LEDVDYVSVEFEG 319 (441)
Q Consensus 297 Kt-Lqel~q~~-~~~p~Y~~i~~~G 319 (441)
|+ ||||+|++ ...|.|++++++|
T Consensus 19 Kt~LqE~~Q~~~~~~P~Y~~~~~~G 43 (98)
T 1x47_A 19 VCILHEYMQRVLKVRPVYNFFECEN 43 (98)
T ss_dssp HHHHHHHHHHHTCSCCEEEEEECSS
T ss_pred HHHHHHHHHHcCCCCCeEEEEEeEC
Confidence 77 99999998 6779999999888
No 43
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=80.21 E-value=0.43 Score=41.42 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=20.4
Q ss_pred CCCCCCc-hHHHHhhc-CCCcceEEEee
Q 013554 292 MDPEDKE-CQPKLRRQ-LEDVDYVSVEF 317 (441)
Q Consensus 292 ~~i~~Kt-Lqel~q~~-~~~p~Y~~i~~ 317 (441)
...+.|+ ||||+|++ ...|.|+++++
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~ 51 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR 51 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee
Confidence 3345588 99999998 67899998754
No 44
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=80.02 E-value=0.9 Score=36.60 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=28.9
Q ss_pred CCCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhcccc-ceeeccCCCc
Q 013554 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPR-LFRACVPPGM 352 (441)
Q Consensus 294 i~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~-~f~~~v~~~~ 352 (441)
.+.|+ ||||+|+++..+.|+ ..+| | +|.+ .|.+.|..+.
T Consensus 6 ~d~Kt~LqE~~Q~~~~~~~Y~--~~~G-------------p-----~H~~~~F~~~v~v~g 46 (88)
T 1x48_A 6 SGYIGLVNSFAQKKKLSVNYE--QCEP-------------N-----SELPQRFICKCKIGQ 46 (88)
T ss_dssp SCHHHHHHHHHHHTTCCEEEE--ECCC-------------S-----SSSSCCEEEEEEESS
T ss_pred CCHHHHHHHHHHHcCCCCeeE--EeeC-------------C-----CCCCceEEEEEEECC
Confidence 34588 999999995566998 6677 2 7887 6988775443
No 45
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=79.02 E-value=0.7 Score=39.35 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=27.6
Q ss_pred Cc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCc
Q 013554 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGM 352 (441)
Q Consensus 297 Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~ 352 (441)
|+ ||||+|. |.|++++++|+ +|.+.|.+.|..+.
T Consensus 40 Ks~LQE~~q~----p~Y~~v~~~Gp------------------~H~k~F~v~V~v~g 74 (114)
T 2ljh_A 40 VAMLNELRHG----LIYKLESQTGP------------------VHAPLFTISVEVDG 74 (114)
T ss_dssp HHHHHHHCSC----CEEEEEEEECC------------------SSSCEEEEEEEETT
T ss_pred HHHHHHHccC----CeEEEEEeeCC------------------CCCCeEEEEEEECC
Confidence 77 9999873 99999999993 78899988775443
No 46
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=74.33 E-value=2.9 Score=32.48 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=30.0
Q ss_pred Cc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCcc
Q 013554 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMH 353 (441)
Q Consensus 297 Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~~ 353 (441)
|+ +++|.|.. ..|.|++++++|+ +|.+.|.++|..+..
T Consensus 7 K~pl~~L~q~~-~~p~Y~~~~~~Gp------------------~H~~~F~~~v~v~g~ 45 (75)
T 3p1x_A 7 KNPVMELNEKR-RGLKYELISETGG------------------SHDKRFVMEVEVDGQ 45 (75)
T ss_dssp CCHHHHHHHHS-TTCCEEEEEEESC------------------TTSCEEEEEEEETTE
T ss_pred CCHHHHHHHcC-CCCEEEEEEeeCC------------------CCCceEEEEEEECCE
Confidence 66 88888764 6899999999993 788999887755443
No 47
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=65.69 E-value=3.2 Score=31.64 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=25.8
Q ss_pred hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCcc
Q 013554 299 CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMH 353 (441)
Q Consensus 299 Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~~ 353 (441)
|||+ +..|.|++++.+|+ +|.+.|.+.|..+..
T Consensus 10 L~E~----~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~~~ 42 (71)
T 2b7v_A 10 LNEL----RPGLKYDFLSESGE------------------SHAKSFVMSVVVDGQ 42 (71)
T ss_dssp HHHH----CCSCEEEEEECCCC------------------TTTCCEEEEEECSSC
T ss_pred HHHh----CCCCEEEEEEeECC------------------CCCceEEEEEEECCE
Confidence 7787 47899999999993 788999887755443
No 48
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=49.78 E-value=8.5 Score=36.19 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=20.7
Q ss_pred Cc-hHHHHhhc-CCCcceEEEeeeC
Q 013554 297 KE-CQPKLRRQ-LEDVDYVSVEFEG 319 (441)
Q Consensus 297 Kt-Lqel~q~~-~~~p~Y~~i~~~G 319 (441)
|+ ||||+|++ ...|.|++++.+|
T Consensus 25 ks~LqE~~q~~~~~~p~Y~~~~~~G 49 (232)
T 2yt4_A 25 VCILHEYMQRVLKVRPVYNFFECEN 49 (232)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECSC
T ss_pred HHHHHHHHHHcCCCCCeEEEEeeEC
Confidence 67 99999999 6779999999888
No 49
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=34.76 E-value=13 Score=34.96 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=28.6
Q ss_pred CCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCcc
Q 013554 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMH 353 (441)
Q Consensus 295 ~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~~ 353 (441)
+.|+ |||| +..|.|++++++|+ +|.+.|.+.|..+..
T Consensus 162 d~ks~LqE~----~~~p~Y~~~~~~Gp------------------~h~~~F~~~v~v~~~ 199 (236)
T 2l3j_A 162 NPVMILNEL----RPGLKYDFLSESGE------------------SHAKSFVMSVVVDGQ 199 (236)
T ss_dssp CHHHHHHHH----CCCEEEEEECCSSS------------------SSSCCEEEEEEETTE
T ss_pred CHHHHHHhc----CCCCcEEEEEeeCC------------------CCCCeEEEEEEECCE
Confidence 3477 9998 57899999999993 788899887755443
No 50
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=33.71 E-value=27 Score=32.72 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=31.4
Q ss_pred CCCCc-hHHHHhhcCCCcceEEEeeeCCccccccccccCCCchhhhccccceeeccCCCcccc
Q 013554 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVPPGMHRF 355 (441)
Q Consensus 294 i~~Kt-Lqel~q~~~~~p~Y~~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~~~~~r~ 355 (441)
++.|+ |+++.+. +..|.|++++++|+ +|.+.|.+.|..+...+
T Consensus 4 ~~~K~~l~~l~e~-~~~p~Y~~~~~~Gp------------------~H~~~F~~~v~v~g~~~ 47 (236)
T 2l3j_A 4 VLPKNALMQLNEI-KPGLQYMLLSQTGP------------------VHAPLFVMSVEVNGQVF 47 (236)
T ss_dssp CCTHHHHHHHHHH-CSSCEEEEEEEESC------------------TTSCEEEEEEEETTEEE
T ss_pred CCCcCHHHHHhhc-CCCceEEEEeccCC------------------CCCCeEEEEEEECCEEE
Confidence 45577 8888754 67799999999993 78888988775544333
No 51
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=29.30 E-value=20 Score=25.36 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=14.2
Q ss_pred CCCCccccccccCCCccccchh
Q 013554 10 LVSDNISFSSAISPFPLQSSLK 31 (441)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ 31 (441)
+.+.+||+.||+|-+|++-+..
T Consensus 14 ~~~~~FScaSSLSAL~l~E~yi 35 (47)
T 1v18_B 14 STPDGFSCSSSLSALSLDEPFI 35 (47)
T ss_dssp SCCCCCC----CCCCCCSSCCC
T ss_pred cCCCCccchhccccccccchhh
Confidence 3678999999999999876644
No 52
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=28.78 E-value=18 Score=33.95 Aligned_cols=37 Identities=8% Similarity=-0.089 Sum_probs=23.9
Q ss_pred CCCCc-hHHHHhhc-CCCcceE--EEeeeCCccccccccccCCCchhhhccccceeeccC
Q 013554 294 PEDKE-CQPKLRRQ-LEDVDYV--SVEFEGNKLTWQDVAAYKPPEDALFAQPRLFRACVP 349 (441)
Q Consensus 294 i~~Kt-Lqel~q~~-~~~p~Y~--~i~~~G~~~s~~d~~~y~pp~~~l~~h~~~f~~~v~ 349 (441)
.+.|+ ||| ++.+ ...|.|. ++...|+ +|.+.|.+.|.
T Consensus 130 ~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp------------------~h~~~F~~~v~ 170 (232)
T 2yt4_A 130 LSPYQILHE-CLKRNHGMGDTSIKFEVVPGK------------------NQKSEYVMACG 170 (232)
T ss_dssp CCHHHHHHH-HHHTSSSCCCEEEECC------------------------CCEEEEEEET
T ss_pred CChhHHHHH-HHHcCCCCCceEEEEeecCCC------------------CCCCEEEEEEE
Confidence 34578 999 7766 6778998 7777783 78888987765
Done!