BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013555
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana
GN=ROPGEF1 PE=1 SV=2
Length = 548
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/432 (77%), Positives = 372/432 (86%), Gaps = 13/432 (3%)
Query: 1 MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
MGS+SS++D + SERCGSYS SAD+SESES SS S RFD EGASSS+ SSPR VA
Sbjct: 1 MGSLSSEED-DEVSSERCGSYSPSADISESESSSSFSC--HRFDGEGASSSIPSSPRVVA 57
Query: 61 -RGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGV 119
RGF FP PVM+PVIGGKDVV WD+K + D DLSE+EMMKERFAKLLLGEDMSGGGKGV
Sbjct: 58 GRGFYFPAPVMLPVIGGKDVV-WDDK--QPDNDLSEIEMMKERFAKLLLGEDMSGGGKGV 114
Query: 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFP 179
CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRE++WLLCVSDSIVEL+PSIQQFP
Sbjct: 115 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFP 174
Query: 180 GGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAF 239
GGGTYE+M TRPRSDLY NLPALKKLDAMLI MLD F +TEFWY DRGIV+GD D+D++
Sbjct: 175 GGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDC-DKDSY 233
Query: 240 SSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLA 299
+S SVR E+KWWLPCPKVP NGLSE+ RKKLQQCRD NQILKAA+AINS VLA
Sbjct: 234 NSPA-----SVRQEDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLA 288
Query: 300 EMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAA 359
EMEIP YLETLPK+GK CLG+IIY+Y+TA++FSPECLLDCLDLSSEH TLE+ANRIEAA
Sbjct: 289 EMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAA 348
Query: 360 VHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQ 419
VHVW+QK+ R+H +K + SSWGGKVKGLV D+E+N L RAETLL SLR+RFPGLPQ
Sbjct: 349 VHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQ 408
Query: 420 TALDMNKIQYNK 431
T LDMNKIQYNK
Sbjct: 409 TTLDMNKIQYNK 420
>sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana
GN=ROPGEF2 PE=1 SV=2
Length = 485
Score = 348 bits (894), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 187/343 (54%), Positives = 240/343 (69%), Gaps = 18/343 (5%)
Query: 95 EVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW 154
E+E MKERF+KLLLGEDMSG GKGVCTA+ ISNAITNL ATVFG+ RLEPL ++K W
Sbjct: 116 ELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLEIEQKTTW 175
Query: 155 RREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLD 214
+REM LL V D I E +P Q G T EVM +RPR+D+Y+NLPAL+KLD+ML+ LD
Sbjct: 176 KREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALD 235
Query: 215 GFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSV--RHEEKWWLPCPKVPQNGLSEDV 272
F +TEFWY + G + + S S R + R EEKWWLP P VP GLSE
Sbjct: 236 SFQKTEFWYAEEGSL-----SMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKA 290
Query: 273 RKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD-Q 331
RK+L+ R+ TNQI KAAMAINSS+L EM+IP +Y+ TLPK+GKA GD IYR++T+ +
Sbjct: 291 RKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGR 350
Query: 332 FSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVA 391
FSPE LLD L + SEH L++A+R+EA+++ W++K L++SK SSW VK L++
Sbjct: 351 FSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRK---ACLNNSK---SSW-NMVKDLMS 403
Query: 392 DSE---KNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
+E KN+ LA RAE+LL L+ R+P L QT+LD+ KI NK
Sbjct: 404 ITERSDKNYVLAERAESLLFCLKQRYPELSQTSLDICKIHCNK 446
>sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana
GN=ROPGEF8 PE=1 SV=1
Length = 523
Score = 344 bits (883), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 177/346 (51%), Positives = 231/346 (66%), Gaps = 25/346 (7%)
Query: 87 EKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPL 146
++S+ +++EMMK+RFAKLLLGEDMSGGGKGV +ALA+SNAITNL+A++FGE +L+P+
Sbjct: 77 KRSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPM 136
Query: 147 APQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLD 206
++A W++E+ WLL V+D IVE VPS Q G E+M TR R DL MN+PAL+KLD
Sbjct: 137 PQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLD 196
Query: 207 AMLIGMLDGF-CETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
AMLI LD F EFWYV R G D R +KWWLP KVP
Sbjct: 197 AMLIDTLDNFRGHNEFWYVSRDSEEGQQARND-------------RTNDKWWLPPVKVPP 243
Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
GLSE R+ L +D Q+ KAAMAIN+ VL+EMEIP +Y+++LPKNG+A LGD IY+
Sbjct: 244 GGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYK 303
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
IT + F PE L LD+S+EH L++ NRIEA+V +WK+K H+K +SSWG
Sbjct: 304 SITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRK------LHTKDTKSSWGSA 357
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
V EK RAET+L L+ +FPGLPQ++LD++KIQ+NK
Sbjct: 358 VS-----LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNK 398
>sp|Q02566|MYH6_MOUSE Myosin-6 OS=Mus musculus GN=Myh6 PE=1 SV=2
Length = 1938
Score = 35.0 bits (79), Expect = 1.1, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1739 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1798
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1799 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1848
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1849 IKELTYQTEEDKKNLMRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1902
>sp|P43352|RAD52_MOUSE DNA repair protein RAD52 homolog OS=Mus musculus GN=Rad52 PE=2 SV=1
Length = 420
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 72 PVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITN 131
P +GGK V+++ + +D + + +++R + M+GGG+ VC + + N
Sbjct: 17 PFVGGKSVLLFGQSQYTADEYQAIQKALRQRLGPEYISSRMAGGGQKVC--YIEGHRVIN 74
Query: 132 LSATVFG 138
L+ +FG
Sbjct: 75 LANEMFG 81
>sp|Q3IEY7|PROA_PSEHT Gamma-glutamyl phosphate reductase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=proA PE=3 SV=1
Length = 415
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 287 LKAAMAINS---SVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDL 343
LK++ AI S SVLA+ +P A + +P + L +++ + + D P ++
Sbjct: 151 LKSSQAIASVMHSVLAKHNLPEALISVIPDPDRGLLMELMQQRDSIDLIIPRGGEGLINF 210
Query: 344 SSEHHTLEVANRIEAAVHVWKQKDQRKHLS-----HSKSRRSSWGGKVKGLV 390
+E+ T+ V + H++ KD ++ + K++R+ ++GLV
Sbjct: 211 VTENSTIPVIQHFKGVCHLYVDKDADLEVAINLLLNGKTQRTGVCNALEGLV 262
>sp|Q9BE39|MYH7_BOVIN Myosin-7 OS=Bos taurus GN=MYH7 PE=2 SV=1
Length = 1935
Score = 34.7 bits (78), Expect = 1.3, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1900
>sp|Q91Z83|MYH7_MOUSE Myosin-7 OS=Mus musculus GN=Myh7 PE=1 SV=1
Length = 1935
Score = 34.7 bits (78), Expect = 1.4, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1900
>sp|P79293|MYH7_PIG Myosin-7 OS=Sus scrofa GN=MYH7 PE=2 SV=2
Length = 1935
Score = 34.7 bits (78), Expect = 1.4, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1900
>sp|P13540|MYH7_MESAU Myosin-7 OS=Mesocricetus auratus GN=MYH7 PE=2 SV=2
Length = 1934
Score = 34.7 bits (78), Expect = 1.4, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1736 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1795
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1796 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1845
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1846 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1899
>sp|P12883|MYH7_HUMAN Myosin-7 OS=Homo sapiens GN=MYH7 PE=1 SV=5
Length = 1935
Score = 34.7 bits (78), Expect = 1.4, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1900
>sp|P49824|MYH7_CANFA Myosin-7 OS=Canis familiaris GN=MYH7 PE=1 SV=3
Length = 1935
Score = 34.7 bits (78), Expect = 1.4, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1900
>sp|Q8MJU9|MYH7_HORSE Myosin-7 OS=Equus caballus GN=MYH7 PE=2 SV=1
Length = 1935
Score = 34.7 bits (78), Expect = 1.5, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CRD + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRDAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +E +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEV--------EQKRNAESIKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1900
>sp|P13539|MYH6_MESAU Myosin-6 OS=Mesocricetus auratus GN=MYH6 PE=2 SV=2
Length = 1939
Score = 34.7 bits (78), Expect = 1.6, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1739 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1798
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1799 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1848
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1849 IKELTYQTEEDKKNLVRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1902
>sp|P02563|MYH6_RAT Myosin-6 OS=Rattus norvegicus GN=Myh6 PE=2 SV=2
Length = 1938
Score = 34.7 bits (78), Expect = 1.7, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1738 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1797
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1798 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1847
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1848 IKELTYQTEEDKKNLVRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1901
>sp|Q18BE7|SYA_CLOD6 Alanine--tRNA ligase OS=Clostridium difficile (strain 630) GN=alaS
PE=3 SV=1
Length = 879
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 320 GDIIYRYITADQFSPEC---LLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSK 376
GD + + F PE + DC +++E+ LEV N + A + KH+ K
Sbjct: 487 GDKVSIVLDNTTFYPEGGGQVGDCGLITNENLVLEVLNTKKGA------NNSIKHIGIIK 540
Query: 377 SRRSSWGGKVKGLVADSEKNHSLA--HRAETLLH 408
S R S G KVK LV D E S A H A LLH
Sbjct: 541 SGRISNGDKVKTLV-DRETRMSAARNHSATHLLH 573
>sp|Q5BLE2|FA73B_DANRE Protein FAM73B OS=Danio rerio GN=fam73b PE=2 SV=1
Length = 596
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 342 DLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRS-SWGGKVKGLVADSEKNHSLA 400
D ++E+ L E A+ W+ +H SHS++ S S G ++ + +NH A
Sbjct: 171 DANAENLYLMGMELFEEALRKWELALNIRHRSHSRASASNSQGSELVERHSPEVRNHQFA 230
Query: 401 HRAETLLH 408
R ETLLH
Sbjct: 231 ERLETLLH 238
>sp|P13533|MYH6_HUMAN Myosin-6 OS=Homo sapiens GN=MYH6 PE=1 SV=5
Length = 1939
Score = 32.3 bits (72), Expect = 6.5, Method: Composition-based stats.
Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1739 LQSEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1798
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ +EA +Q+++ K R S +
Sbjct: 1799 LDEAEQIALKGGKKQLQ-KLEARVRELEGELEA--------EQKRNAESVKGMRKS-ERR 1848
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ 440
+K L +E++ R + L+ L+L+ + A + + Q N R Q
Sbjct: 1849 IKELTYQTEEDKKNLLRLQDLVDKLQLKVKAYKRQAEEAEE-QANTNLSKFRKVQ 1902
>sp|B0VRG7|SECA_ACIBS Protein translocase subunit SecA OS=Acinetobacter baumannii (strain
SDF) GN=secA PE=3 SV=1
Length = 911
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 271 DVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD 330
D+RK L + D N+ K + +LAE + Y+E + + + + + A+
Sbjct: 638 DIRKNLLKYDDVNNEQRKIIYSQRDEILAENTL-QEYVEEMHRE--------VMQAMIAN 688
Query: 331 QFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQR 369
PE + D D+ + L + IE V W ++D+R
Sbjct: 689 FIPPESIHDQWDVEGLENALRIDLGIELPVQEWLEQDRR 727
>sp|B2HYI3|SECA_ACIBC Protein translocase subunit SecA OS=Acinetobacter baumannii (strain
ACICU) GN=secA PE=3 SV=1
Length = 907
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 271 DVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD 330
D+RK L + D N+ K + +LAE + Y+E + + + + + A+
Sbjct: 638 DIRKNLLKYDDVNNEQRKIIYSQRDEILAENTLQE-YVEEMHRE--------VMQAMIAN 688
Query: 331 QFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQR 369
PE + D D+ + L + IE V W ++D+R
Sbjct: 689 FIPPESIHDQWDVEGLENALRIDLGIELPVQEWLEQDRR 727
>sp|B0V514|SECA_ACIBY Protein translocase subunit SecA OS=Acinetobacter baumannii (strain
AYE) GN=secA PE=3 SV=1
Length = 907
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 271 DVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD 330
D+RK L + D N+ K + +LAE + Y+E + + + + + A+
Sbjct: 638 DIRKNLLKYDDVNNEQRKIIYSQRDEILAENTLQE-YVEEMHRE--------VMQAMIAN 688
Query: 331 QFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQR 369
PE + D D+ + L + IE V W ++D+R
Sbjct: 689 FIPPESIHDQWDVEGLENALRIDLGIELPVQEWLEQDRR 727
>sp|B7I8J5|SECA_ACIB5 Protein translocase subunit SecA OS=Acinetobacter baumannii (strain
AB0057) GN=secA PE=3 SV=1
Length = 907
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 271 DVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD 330
D+RK L + D N+ K + +LAE + Y+E + + + + + A+
Sbjct: 638 DIRKNLLKYDDVNNEQRKIIYSQRDEILAENTLQE-YVEEMHRE--------VMQAMIAN 688
Query: 331 QFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQR 369
PE + D D+ + L + IE V W ++D+R
Sbjct: 689 FIPPESIHDQWDVEGLENALRIDLGIELPVQEWLEQDRR 727
>sp|B7GWR2|SECA_ACIB3 Protein translocase subunit SecA OS=Acinetobacter baumannii (strain
AB307-0294) GN=secA PE=3 SV=1
Length = 907
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 271 DVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD 330
D+RK L + D N+ K + +LAE + Y+E + + + + + A+
Sbjct: 638 DIRKNLLKYDDVNNEQRKIIYSQRDEILAENTLQE-YVEEMHRE--------VMQAMIAN 688
Query: 331 QFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQR 369
PE + D D+ + L + IE V W ++D+R
Sbjct: 689 FIPPESIHDQWDVEGLENALRIDLGIELPVQEWLEQDRR 727
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,312,749
Number of Sequences: 539616
Number of extensions: 7550632
Number of successful extensions: 20122
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 19587
Number of HSP's gapped (non-prelim): 446
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)