Query 013555
Match_columns 441
No_of_seqs 90 out of 112
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 12:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ntx_A EMB|CAB41934.1, prone8; 100.0 3E-182 1E-186 1321.3 21.9 324 90-437 5-329 (365)
2 2dae_A KIAA0733 protein; mitog 76.2 1.3 4.4E-05 36.2 2.2 26 405-430 12-37 (75)
3 3o0y_A Lipoprotein; structural 44.5 99 0.0034 32.6 9.9 84 266-366 232-326 (609)
4 2w9y_A CE-FAR-7, fatty acid/re 39.1 30 0.001 30.8 4.3 37 387-423 49-86 (140)
5 1wgl_A TOLL-interacting protei 32.1 25 0.00086 26.7 2.3 34 404-437 10-43 (59)
6 1b63_A MUTL; DNA mismatch repa 32.1 71 0.0024 30.5 6.0 29 168-204 133-161 (333)
7 2oz8_A MLL7089 protein; struct 31.4 32 0.0011 33.1 3.5 51 94-144 62-126 (389)
8 2qq6_A Mandelate racemase/muco 26.3 52 0.0018 31.8 4.0 27 118-144 87-114 (410)
9 2fym_A Enolase; RNA degradosom 25.8 57 0.002 32.1 4.2 29 115-143 103-132 (431)
10 3msq_A Putative ubiquinone bio 24.8 34 0.0012 31.6 2.3 29 304-335 76-104 (224)
11 4axd_A Inositol-pentakisphosph 22.7 41 0.0014 34.8 2.6 33 253-290 173-207 (456)
12 3kfo_A Nucleoporin NUP133; nuc 22.2 1E+02 0.0035 29.9 5.2 84 275-371 76-173 (288)
13 2ptz_A Enolase; lyase, glycoly 21.4 79 0.0027 31.4 4.3 50 94-143 67-134 (432)
14 3kb4_A ALR8543 protein; alpha- 21.2 45 0.0015 31.1 2.3 31 305-338 72-102 (225)
15 1kl9_A Eukaryotic translation 20.7 86 0.0029 28.1 4.0 38 274-312 139-176 (182)
16 3hrd_B Nicotinate dehydrogenas 20.6 60 0.0021 31.2 3.2 30 120-153 294-323 (330)
No 1
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=100.00 E-value=3.1e-182 Score=1321.29 Aligned_cols=324 Identities=53% Similarity=0.884 Sum_probs=275.9
Q ss_pred CCChhHHHHHHHHHHHhhhccCCCCCCcchhhHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhhcceeeeccceeE
Q 013555 90 DTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIV 169 (441)
Q Consensus 90 ~~~~se~E~MKErFaKLLLGEDMSGggKGV~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmdwLLSvsD~IV 169 (441)
+...+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+|||||||||||||||||
T Consensus 5 ~~~~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~IV 84 (365)
T 2ntx_A 5 ERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIV 84 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTSSCCSCCHHHHHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGCE
T ss_pred cCCchHHHHHHHHHHHHhhcCCCCCCCCcccHHHHHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeeccceeE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecceecCCCceEEeeccccccccccCchhHHHHHHHHHHHhhccCC-CeeEeEeCCcccCCCCCCCCCCCCCCCCCC
Q 013555 170 ELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCE-TEFWYVDRGIVVGDGGDRDAFSSMVPSGRP 248 (441)
Q Consensus 170 ElvPs~Q~~~dG~~~EvM~~rpRsDl~~NLPALrKLD~MLle~LDsF~d-tEFWYv~~g~~~~~~~~~~~~~~s~s~r~~ 248 (441)
|||||+|++|||+++|||+||||+|||||||||||||+||||+||||+| ||||||++|+. + +.++.
T Consensus 85 E~vPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLle~LDsf~d~tEFWYv~~g~~--~-----------~~~~~ 151 (365)
T 2ntx_A 85 EFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSE--E-----------GQQAR 151 (365)
T ss_dssp EEEEC----------CCEEEEECHHHHTHHHHHHHHHHHHHHHHHGGGSCCCCEEC------------------------
T ss_pred EeccccccCCCCceEEEeeccccchhhcCcHHHHHHHHHHHHHHHhCCCCCeeEEecCCCC--c-----------cccCC
Confidence 9999999999999999999999999999999999999999999999999 99999999941 1 12457
Q ss_pred ccccCccccccCCCCCCCCCCHHHHHHhhhhhhhHHHHHHHHHHhhhhhhccCCCcHHHHhhcccCCccchhHHHHHHhh
Q 013555 249 SVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYIT 328 (441)
Q Consensus 249 ~~R~eeKWWLP~P~VP~~GLSe~~RK~L~~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGrasLGD~iYr~iT 328 (441)
.+|||+|||||+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||
T Consensus 152 ~~r~eeKWWLP~p~VP~~GLSe~~RK~L~~qrd~~~QIlKAAmAIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it 231 (365)
T 2ntx_A 152 NDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSIT 231 (365)
T ss_dssp ---------CCCEECCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHSCSCHHHHHCHHHHHHHT
T ss_pred cccccccccCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhHhHhhcCCCcHHHHHhcccccccccHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHhhhcCCCchhhHHHHhhhhHHHHHHHHHhhhccccCCCCCCcCCccccccccccchhhHHHHHHHHHHHHH
Q 013555 329 ADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLH 408 (441)
Q Consensus 329 ~d~Fspe~lL~~ldLssEH~aLe~aNRiEAai~vWrrK~~~k~~~~~~~~kssWg~~Vkd~~~d~dK~e~laeRAEtlL~ 408 (441)
+|+|||||||+||||+|||+|||+||||||||||||||++.++ +|+|||..| +.|||++|++|||+||+
T Consensus 232 ~d~Fspe~ll~~ldlssEH~~le~anRiEAsi~vWrrk~~~k~------~kssW~~~~-----~~dK~~~l~eRAEtlL~ 300 (365)
T 2ntx_A 232 EEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKD------TKSSWGSAV-----SLEKRELFEERAETILV 300 (365)
T ss_dssp CSSCCHHHHHHTSCCCSHHHHHHHHHHHHHHHHHHHHC-------------------------CHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHhhcCCC------CCCCCcccc-----chhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887 889997644 48999999999999999
Q ss_pred HHHhhCCCCCcchhhhhhhhccccccchh
Q 013555 409 SLRLRFPGLPQTALDMNKIQYNKGSQYLR 437 (441)
Q Consensus 409 ~LKqRfPgLpQT~LD~sKIQyNkDVG~A~ 437 (441)
||||||||||||+||++|||||||||||.
T Consensus 301 ~LKqRfPglpQTsLD~sKIQyNkDVG~aI 329 (365)
T 2ntx_A 301 LLKQKFPGLPQSSLDISKIQFNKDVGQAV 329 (365)
T ss_dssp HHHHHCTTCCCCHHHHHHHHHCCCHHHHH
T ss_pred HHHHhCCCCCchHHHHHHHHccchHHHHH
Confidence 99999999999999999999999999985
No 2
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.20 E-value=1.3 Score=36.16 Aligned_cols=26 Identities=35% Similarity=0.672 Sum_probs=20.1
Q ss_pred HHHHHHHhhCCCCCcchhhhhhhhcc
Q 013555 405 TLLHSLRLRFPGLPQTALDMNKIQYN 430 (441)
Q Consensus 405 tlL~~LKqRfPgLpQT~LD~sKIQyN 430 (441)
.|++-||||||.+|+...--+=.|-|
T Consensus 12 qvfheLkQrFPEvPd~VVsqc~~qN~ 37 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRCMLQNN 37 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHTTTT
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 37889999999999988765544433
No 3
>3o0y_A Lipoprotein; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, lipid protein; 1.70A {Colwellia psychrerythraea}
Probab=44.51 E-value=99 Score=32.62 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCCCHHHHHHhhhhhhhHHHHHHHHHHhhhhhhccCCCcHHHHhhcccCCc-----cch--hHHHHHHh----hcCCCCh
Q 013555 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGK-----ACL--GDIIYRYI----TADQFSP 334 (441)
Q Consensus 266 ~GLSe~~RK~L~~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGr-----asL--GD~iYr~i----T~d~Fsp 334 (441)
+||++..++.|..+ |..||+..|+--+.==-.|++.|-.+|+ ..| |+..|+++ |.-..+|
T Consensus 232 ~~l~~~~~~~l~~~---------a~~ai~~~v~PAy~~l~~~l~~l~p~a~~~~G~~~lP~G~~~Y~~~l~~~ttt~~t~ 302 (609)
T 3o0y_A 232 DSLTTEQKQSLITQ---------VIAKVSQVVYPAYQSVEKASEQLLSEARSESGIWAQPKGSVYYQDAIKQLGDSELSP 302 (609)
T ss_dssp TTSCHHHHHHHHHH---------HHHHHHHTHHHHHHHHHHHHHHHTTTSBSCCSGGGSTTHHHHHHHHHHHHHCCCSCH
T ss_pred ccCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchhcCCChHHHHHHHHHHhhCCCCCH
Confidence 46999988887544 2233344333222222234444433333 334 99999987 5566799
Q ss_pred HHHhhhcCCCchhhHHHHhhhhHHHHHHHHHh
Q 013555 335 ECLLDCLDLSSEHHTLEVANRIEAAVHVWKQK 366 (441)
Q Consensus 335 e~lL~~ldLssEH~aLe~aNRiEAai~vWrrK 366 (441)
|++.. -.++-..||.+.|..=.++
T Consensus 303 dEi~~--------~gl~ev~ri~~em~~i~~~ 326 (609)
T 3o0y_A 303 TQIHQ--------IGLDEVARISGVMNEILLA 326 (609)
T ss_dssp HHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 98753 3466677887777643333
No 4
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=39.10 E-value=30 Score=30.77 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=29.9
Q ss_pred cccccch-hhHHHHHHHHHHHHHHHHhhCCCCCcchhh
Q 013555 387 KGLVADS-EKNHSLAHRAETLLHSLRLRFPGLPQTALD 423 (441)
Q Consensus 387 kd~~~d~-dK~e~laeRAEtlL~~LKqRfPgLpQT~LD 423 (441)
.+++... +|..-|-+|++.|...|+++.-+|+..+-.
T Consensus 49 ~e~i~alK~KSp~L~~K~~~l~~~lk~Ki~~L~Peak~ 86 (140)
T 2w9y_A 49 GEMIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAAVE 86 (140)
T ss_dssp TTHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444 789999999999999999999999876543
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.11 E-value=25 Score=26.73 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhccccccchh
Q 013555 404 ETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLR 437 (441)
Q Consensus 404 EtlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~A~ 437 (441)
|.-+..|+.-||++.+..+-..=..+|.||..|.
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI 43 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAI 43 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4567789999999999999888888888887664
No 6
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=32.09 E-value=71 Score=30.45 Aligned_cols=29 Identities=45% Similarity=0.644 Sum_probs=22.7
Q ss_pred eEEeeecceecCCCceEEeeccccccccccCchhHHH
Q 013555 168 IVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKK 204 (441)
Q Consensus 168 IVElvPs~Q~~~dG~~~EvM~~rpRsDl~~NLPALrK 204 (441)
.++..|. ..+.||+++| .||+-|+|+-+|
T Consensus 133 ~~~~~~~--~~~~GT~V~v------~~Lf~n~P~r~k 161 (333)
T 1b63_A 133 NVTVKPA--AHPVGTTLEV------LDLFYNTPARRK 161 (333)
T ss_dssp EEEEEEE--CCCSEEEEEE------ESTTTTCHHHHH
T ss_pred eEeeecc--cCCCCCEEEE------ecccccchhhhh
Confidence 4566664 3578999999 689999999766
No 7
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=31.36 E-value=32 Score=33.06 Aligned_cols=51 Identities=20% Similarity=0.121 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHhhhccC-------CCCCCcc------hhhHHHHHHHHhHhHHhhhcc-ccccC
Q 013555 94 SEVEMMKERFAKLLLGED-------MSGGGKG------VCTALAISNAITNLSATVFGE-LWRLE 144 (441)
Q Consensus 94 se~E~MKErFaKLLLGED-------MSGggKG------V~tALAiSNAITNL~AtVFGe-lwrLE 144 (441)
+-+..+++.++.+|.|+| +-+++.| .+...||..|+-.|.|-..|. +|+|=
T Consensus 62 ~~~~~i~~~l~p~l~G~d~~~~~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lL 126 (389)
T 2oz8_A 62 EIESVFEHEVWPSLKGNRAIALVHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLL 126 (389)
T ss_dssp HHHHHHHHHTHHHHTTSCHHHHTTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHc
Confidence 345667777999999998 4334444 467789999999999998887 66653
No 8
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=26.28 E-value=52 Score=31.77 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.5
Q ss_pred chhhHHHHHHHHhHhHHhhhcc-ccccC
Q 013555 118 GVCTALAISNAITNLSATVFGE-LWRLE 144 (441)
Q Consensus 118 GV~tALAiSNAITNL~AtVFGe-lwrLE 144 (441)
+..+..||+.|+-.|.|-..|. +|+|=
T Consensus 87 ~~~A~~aid~AlwDl~gk~~g~Pl~~lL 114 (410)
T 2qq6_A 87 VITALSGIETALWDLAGKLQGVPVYRLL 114 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGGT
T ss_pred HHHHHHHHHHHHHHHhHhHcCCcHHHHc
Confidence 4566789999999999999997 77763
No 9
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=25.76 E-value=57 Score=32.09 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=24.1
Q ss_pred CCcchhhHHHHHHHHhHhHHhhhcc-cccc
Q 013555 115 GGKGVCTALAISNAITNLSATVFGE-LWRL 143 (441)
Q Consensus 115 ggKGV~tALAiSNAITNL~AtVFGe-lwrL 143 (441)
++.|..+..||+.|+-.+.|-..|. +|+|
T Consensus 103 ~~~g~~A~~avd~AlwD~~ak~~g~Pl~~l 132 (431)
T 2fym_A 103 SKFGANAILAVSLANAKAAAAAKGMPLYEH 132 (431)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4556688899999999999999887 6665
No 10
>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}
Probab=24.78 E-value=34 Score=31.63 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=21.9
Q ss_pred cHHHHhhcccCCccchhHHHHHHhhcCCCChH
Q 013555 304 PAAYLETLPKNGKACLGDIIYRYITADQFSPE 335 (441)
Q Consensus 304 Pe~y~esLPKnGrasLGD~iYr~iT~d~Fspe 335 (441)
--.++.+||++ |||-..|+.|....|+|+
T Consensus 76 dl~~L~~lP~g---TlG~~Y~~fl~~~g~spd 104 (224)
T 3msq_A 76 NLDDLAKLPEG---TLGHVYAREMKARGFDPY 104 (224)
T ss_dssp CHHHHHTSCTT---BHHHHHHHHHHHC-----
T ss_pred CHHHHHcCCCC---ChHHHHHHHHHHcCCCCC
Confidence 34789999998 999999999999999998
No 11
>4axd_A Inositol-pentakisphosphate 2-kinase; transferase, inositol kinase, phytic acid, protein kinase, I signalling; HET: ANP CIT; 2.05A {Arabidopsis thaliana} PDB: 4axc_A 4aqk_A* 4axf_A* 4axe_A* 2xam_A* 2xal_A* 2xan_A* 2xao_A* 2xar_A* 3udz_A* 3udt_A* 3uds_A*
Probab=22.70 E-value=41 Score=34.79 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=24.7
Q ss_pred Cccc-cccCCC-CCCCCCCHHHHHHhhhhhhhHHHHHHHH
Q 013555 253 EEKW-WLPCPK-VPQNGLSEDVRKKLQQCRDCTNQILKAA 290 (441)
Q Consensus 253 eeKW-WLP~P~-VP~~GLSe~~RK~L~~qrd~~nQIlKAA 290 (441)
-.|| |||.+. || +...-+...+|=|..|.+|++
T Consensus 173 KPKwGflp~s~~i~-----~~~~~k~~~CRfCm~Q~~K~~ 207 (456)
T 4axd_A 173 KPKCGFLPTSRFIG-----KENMLKTSVSRFKMHQLLKLE 207 (456)
T ss_dssp CCCCCSCCCSTTCC-----GGGGGGGTSCHHHHHHHHHHH
T ss_pred cccccccCCCCCCC-----cccccccccCHHHHHHHHHhc
Confidence 3799 999865 44 333445667999999999976
No 12
>3kfo_A Nucleoporin NUP133; nuclear pore complex, yeast, proteolysis, structural genomics, PSI2, protein structure initiative; HET: MSE; 1.90A {Saccharomyces cerevisiae}
Probab=22.24 E-value=1e+02 Score=29.95 Aligned_cols=84 Identities=8% Similarity=0.130 Sum_probs=58.0
Q ss_pred HhhhhhhhHHHHHHHHHHhhhhhhccCCCcHHHHhhcccCCccchhHHHHHHhhcCCCChHHHhhhcCCCch----hhHH
Q 013555 275 KLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSE----HHTL 350 (441)
Q Consensus 275 ~L~~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGrasLGD~iYr~iT~d~Fspe~lL~~ldLssE----H~aL 350 (441)
-++.|.+..++|.++.. -++..|.+. .=+.-+.+.++|.+.-...+|++|++-|-|-.. +.||
T Consensus 76 lI~~Q~~L~~~i~~~~~----------~~~k~~~~~---al~~lf~~~~~kL~~~~~L~~~eLIDLLTLid~~~~F~~AL 142 (288)
T 3kfo_A 76 TIDAEKNISNKLKKGEV----------QICKRFKNG---SIREVFNILVEELKSTTVVNLSDLVELYSMLDDEESLFIPL 142 (288)
T ss_dssp HHHHHHHHHHHHHHTCS----------CBCGGGSSH---HHHHHHHHHHHHHHSSSCCCHHHHHHHHTTBCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh----------HHHHHhhhH---HHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCChhHHHHHH
Confidence 45788899999987421 244444321 003356677788889999999999998766543 3578
Q ss_pred HHhhhh----------HHHHHHHHHhhhccc
Q 013555 351 EVANRI----------EAAVHVWKQKDQRKH 371 (441)
Q Consensus 351 e~aNRi----------EAai~vWrrK~~~k~ 371 (441)
.++... .+---||||=+..-+
T Consensus 143 kvL~~~~~~~~~e~~~~l~~lIWRRcilrDd 173 (288)
T 3kfo_A 143 RLLSVDGNLLNFEVKKFLNALVWRRIVLLNA 173 (288)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccCCHHHHHHHHHHHHHHHHhhcC
Confidence 888777 355789999887754
No 13
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A
Probab=21.45 E-value=79 Score=31.39 Aligned_cols=50 Identities=30% Similarity=0.381 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhhhccCCC-----------------CCCcchhhHHHHHHHHhHhHHhhhcc-cccc
Q 013555 94 SEVEMMKERFAKLLLGEDMS-----------------GGGKGVCTALAISNAITNLSATVFGE-LWRL 143 (441)
Q Consensus 94 se~E~MKErFaKLLLGEDMS-----------------GggKGV~tALAiSNAITNL~AtVFGe-lwrL 143 (441)
.-++.+.+.++.+|+|.|.. +++.|..+.+||+.|+-.++|-..|. +|+|
T Consensus 67 ~av~~v~~~iap~LiG~d~~~~~~i~~~m~~~~~~~~~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~l 134 (432)
T 2ptz_A 67 QAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRY 134 (432)
T ss_dssp HHHHHHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555555566666666521 24456678899999999999999987 6765
No 14
>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG, function; HET: GR0; 2.41A {Nostoc SP}
Probab=21.16 E-value=45 Score=31.12 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=25.3
Q ss_pred HHHHhhcccCCccchhHHHHHHhhcCCCChHHHh
Q 013555 305 AAYLETLPKNGKACLGDIIYRYITADQFSPECLL 338 (441)
Q Consensus 305 e~y~esLPKnGrasLGD~iYr~iT~d~Fspe~lL 338 (441)
-.++.+||++ |||-..++.|....|+|+..-
T Consensus 72 l~~L~~lP~g---TlG~~Y~~fl~~~g~~pd~~~ 102 (225)
T 3kb4_A 72 LEQLHQLPNY---TLGYMYADHMIRNQLTPPPVN 102 (225)
T ss_dssp HHHHTTSCTT---BHHHHHHHHHHHTTCCC----
T ss_pred HHHHHcCCCC---ChHHHHHHHHHHcCCCCCcCC
Confidence 3689999998 999999999999999999543
No 15
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=20.70 E-value=86 Score=28.06 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.7
Q ss_pred HHhhhhhhhHHHHHHHHHHhhhhhhccCCCcHHHHhhcc
Q 013555 274 KKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLP 312 (441)
Q Consensus 274 K~L~~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLP 312 (441)
|+..|..+.+...||.|-. |..+|.+..||+.+.+.|=
T Consensus 139 ~~~~~~~~~~~~~f~~~~~-~~~~l~~~~~~~~~~~~l~ 176 (182)
T 1kl9_A 139 DKYKRPGYGAYDAFKHAVS-DPSILDSLDLNEDEREVLI 176 (182)
T ss_dssp HHHTCTTHHHHHHHHHHHH-CGGGGTTSSCCHHHHHHHH
T ss_pred hhcCCcchhHHHHHHHHhc-ChhhhhhcCCCHHHHHHHH
Confidence 3444555567888888877 9999999999999987763
No 16
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=20.62 E-value=60 Score=31.23 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred hhHHHHHHHHhHhHHhhhccccccCCCchhHHhh
Q 013555 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAM 153 (441)
Q Consensus 120 ~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~m 153 (441)
++|-||.|||-|.. |.-.+=-|+.|||--+
T Consensus 294 ~~~~Ai~nAi~~A~----G~r~~~lP~tpe~i~~ 323 (330)
T 3hrd_B 294 PMIPAVVAAIEDAL----GTRFTHTPIMPKDIVA 323 (330)
T ss_dssp THHHHHHHHHHHHH----TSCCCBSCCCHHHHHH
T ss_pred chHHHHHHHHHHHh----CCccccCCCCHHHHHH
Confidence 56779999999865 7655666999998543
Done!