Query 013555
Match_columns 441
No_of_seqs 90 out of 112
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 12:46:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013555.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013555hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v97a5 d.133.1.1 (A:695-1332) 42.6 6.9 0.00051 38.0 3.3 27 124-150 579-610 (638)
2 d1t3qb2 d.133.1.1 (B:166-786) 39.1 9.4 0.00069 36.5 3.6 36 120-157 583-619 (621)
3 d1ffvb2 d.133.1.1 (B:147-803) 28.1 24 0.0017 34.0 4.5 38 119-157 615-652 (657)
4 d2ia7a1 d.373.1.1 (A:23-133) U 24.3 22 0.0016 26.9 2.8 38 122-159 8-57 (111)
5 d1n62b2 d.133.1.1 (B:147-809) 23.2 31 0.0023 33.1 4.3 44 115-159 611-660 (663)
6 d1x6va3 c.37.1.4 (A:34-228) Ad 21.6 24 0.0017 26.7 2.5 36 307-342 23-63 (195)
7 d1h7sa2 d.122.1.2 (A:29-231) D 21.4 36 0.0026 28.1 3.8 32 165-204 112-143 (203)
8 d1b6aa1 a.4.5.25 (A:375-448) M 20.9 26 0.0019 25.5 2.5 26 401-426 23-48 (74)
9 d1bnda_ g.17.1.3 (A:) Brain-de 20.5 32 0.0023 27.5 3.1 29 162-190 3-35 (109)
10 d1rm6a2 d.133.1.1 (A:134-769) 20.5 22 0.0016 34.1 2.5 32 119-154 597-628 (636)
No 1
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=42.61 E-value=6.9 Score=38.04 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=21.7
Q ss_pred HHHHHHhHhHHhhhcc----cccc-CCCchhH
Q 013555 124 AISNAITNLSATVFGE----LWRL-EPLAPQK 150 (441)
Q Consensus 124 AiSNAITNL~AtVFGe----lwrL-EPL~~ek 150 (441)
||.|||-|....-|.. .+.+ =|+.|||
T Consensus 579 AI~nAi~~A~g~~~~~~~~~~~~~~lP~TPer 610 (638)
T d1v97a5 579 AIKDAIRAARAQHTNNNTKELFRLDSPATPEK 610 (638)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCCCCCBSCCHHH
T ss_pred HHHHHHHHhhhhhccccccccccCCCCCCHHH
Confidence 9999999999988873 4444 3999997
No 2
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]}
Probab=39.14 E-value=9.4 Score=36.50 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhHhHHhhhc-cccccCCCchhHHhhhhhh
Q 013555 120 CTALAISNAITNLSATVFG-ELWRLEPLAPQKKAMWRRE 157 (441)
Q Consensus 120 ~tALAiSNAITNL~AtVFG-elwrLEPL~~ekK~mWrRE 157 (441)
++|=||.|||.|-... +| .+.+| |+.|||=-+.-+|
T Consensus 583 ~~~~AI~nAi~~A~g~-~~~r~~~l-P~tpe~v~~al~~ 619 (621)
T d1t3qb2 583 SAPAAVVAAVNDALAH-LEVVIETV-PITPERIFRSIQE 619 (621)
T ss_dssp HHHHHHHHHHHHHHGG-GTCCCCEE-SCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCC-cCCcccCC-CCCHHHHHHHHhh
Confidence 4667999999997653 22 34444 9999986554443
No 3
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=28.08 E-value=24 Score=33.96 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhh
Q 013555 119 VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRE 157 (441)
Q Consensus 119 V~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrRE 157 (441)
+++|=||.|||-|-... .|--.+==|+.|||=-..-+|
T Consensus 615 ~~~~~Ai~nAI~~A~~~-tG~r~~~lP~Tpe~v~~al~~ 652 (657)
T d1ffvb2 615 VGSIPTFTAAVVDAFAH-VGVTHLDMPHTSYRVWKSLKE 652 (657)
T ss_dssp HHHHHHHHHHHHHHHGG-GTCCCCCSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh-hCCccCCCCCCHHHHHHHHHh
Confidence 45777899999987432 365444449999986665554
No 4
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=24.31 E-value=22 Score=26.93 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHHHhHhHHhhhcc----------cccc--CCCchhHHhhhhhhcc
Q 013555 122 ALAISNAITNLSATVFGE----------LWRL--EPLAPQKKAMWRREMQ 159 (441)
Q Consensus 122 ALAiSNAITNL~AtVFGe----------lwrL--EPL~~ekK~mWrREmd 159 (441)
.=+|-++|-||--|-+|| +|.| ||+.+.-+...++++.
T Consensus 8 ee~I~q~i~nll~T~~GEr~~~p~fG~~l~~llFe~~~~~~~~~i~~~I~ 57 (111)
T d2ia7a1 8 EEDIAESIRIILGTARGERVMRPDFGCGIHDRVFSVINTTTLGLIENEVK 57 (111)
T ss_dssp HHHHHHHHHHHHTCCTTSSTTCTTCSCGGGGCCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccccCCccccEechhhhhhcchhHHHHHHHHHH
Confidence 347889999999999999 8888 9999999999999884
No 5
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=23.18 E-value=31 Score=33.05 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=33.6
Q ss_pred CCcch------hhHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhhcc
Q 013555 115 GGKGV------CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQ 159 (441)
Q Consensus 115 ggKGV------~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmd 159 (441)
|.||| ++|=||.|||-|-.+ .+|--.+=-||.|||=-+.-+|+.
T Consensus 611 GakGvGE~~~~~~~~Ai~nAI~~A~~-~~G~r~~~lP~tpe~v~~~~~~~~ 660 (663)
T d1n62b2 611 GAKGVGESPHVGGVPCFSNAVNDAYA-FLNAGHIQMPHDAWRLWKVGEQLG 660 (663)
T ss_dssp SBCCCTTHHHHHHHHHHHHHHHHHHH-TTTCCCCCSCCCHHHHHHHHHHTT
T ss_pred CceecccccccchHHHHHHHHHHHHH-hcCCccccCCCCHHHHHHHHHHcC
Confidence 55665 478899999998764 578766777999999866667764
No 6
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.56 E-value=24 Score=26.68 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=26.3
Q ss_pred HHhhcccCCccchhHHHHHHh-----hcCCCChHHHhhhcC
Q 013555 307 YLETLPKNGKACLGDIIYRYI-----TADQFSPECLLDCLD 342 (441)
Q Consensus 307 y~esLPKnGrasLGD~iYr~i-----T~d~Fspe~lL~~ld 342 (441)
|+--+|-+||++||..|-+.+ ..+.+..+++.....
T Consensus 23 ~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~ 63 (195)
T d1x6va3 23 WLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN 63 (195)
T ss_dssp EEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccc
Confidence 355679999999999998876 455666776665433
No 7
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.38 E-value=36 Score=28.14 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=26.3
Q ss_pred cceeEEeeecceecCCCceEEeeccccccccccCchhHHH
Q 013555 165 SDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKK 204 (441)
Q Consensus 165 sD~IVElvPs~Q~~~dG~~~EvM~~rpRsDl~~NLPALrK 204 (441)
-..+++.-|.. .+.||+++| .||+-|+|+-||
T Consensus 112 ~g~~~~~~~~~--~~~GTtV~v------~~LF~n~PvRrk 143 (203)
T d1h7sa2 112 NGKIIQKTPYP--RPRGTTVSV------QQLFSTLPVRHK 143 (203)
T ss_dssp TSCEEEEEECC--CCSEEEEEE------ESTTTTSHHHHH
T ss_pred cCceeeeeecc--cccceEEEe------ehhhhhHHHHHH
Confidence 34688888874 568999999 599999999887
No 8
>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.88 E-value=26 Score=25.50 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhCCCCCcchhhhhh
Q 013555 401 HRAETLLHSLRLRFPGLPQTALDMNK 426 (441)
Q Consensus 401 eRAEtlL~~LKqRfPgLpQT~LD~sK 426 (441)
..|+.+|..|+.+|+.||.+-=-..+
T Consensus 23 ~~ar~lL~~I~~~f~tLPFs~R~L~~ 48 (74)
T d1b6aa1 23 PRTKHLLNVINENFGTLAFCRRWLDR 48 (74)
T ss_dssp HHHHHHHHHHHHHTTTSCEEHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCccHHHHhh
Confidence 35778999999999999998544443
No 9
>d1bnda_ g.17.1.3 (A:) Brain-derived neurotrophic factor, BDNF {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.53 E-value=32 Score=27.50 Aligned_cols=29 Identities=38% Similarity=0.384 Sum_probs=26.0
Q ss_pred eeccceeEEee----ecceecCCCceEEeeccc
Q 013555 162 LCVSDSIVELV----PSIQQFPGGGTYEVMATR 190 (441)
Q Consensus 162 LSvsD~IVElv----Ps~Q~~~dG~~~EvM~~r 190 (441)
+||||.+-+.| |+.-+.-.|..+|||..-
T Consensus 3 ~svCdsvs~Wvt~~nk~ta~D~~G~~Vtvl~~v 35 (109)
T d1bnda_ 3 LSVCDSISEWVTAADKKTAVDMSGGTVTVLEKV 35 (109)
T ss_dssp EESSCEEEEEEEHHHHCEEEBTTSCEEEECSEE
T ss_pred cccccceEEEEEccCcceeEeCCCCEEEEEEEE
Confidence 79999999999 888888899999999754
No 10
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=20.51 E-value=22 Score=34.13 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHhHhHHhhhccccccCCCchhHHhhh
Q 013555 119 VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW 154 (441)
Q Consensus 119 V~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mW 154 (441)
+++|-||.|||-|.. |.--+==|+.|||=-..
T Consensus 597 ~~~~~Ai~nAI~~A~----G~r~~~lP~tpe~v~~a 628 (636)
T d1rm6a2 597 AGFLPAIHEAVYEAV----GVRATDFPLSPDRITEL 628 (636)
T ss_dssp TTHHHHHHHHHHHHH----SCCCCEESCCHHHHHHH
T ss_pred ccHHHHHHHHHHHhH----CCCcCcCCCCHHHHHHH
Confidence 357889999999963 65333349999985443
Done!