BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013559
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45432|CSN1_ARATH COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1
PE=1 SV=2
Length = 441
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/442 (80%), Positives = 403/442 (91%), Gaps = 2/442 (0%)
Query: 1 MEPEDEQSNSMMEEICSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHC 60
ME ++E S MME +C+NGGEE++ RPIISGE LD+EAYA+LY+GRTKI RL+FIA+HC
Sbjct: 1 MERDEEASGPMME-MCTNGGEETSNRRPIISGEPLDIEAYAALYKGRTKIMRLLFIANHC 59
Query: 61 DIA-SMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRK 119
++Q +ALRMAYDEIKKGENTQLFREVV KI RLG Y MD AWC++VDRRAEQ+K
Sbjct: 60 GGNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCEAVDRRAEQKK 119
Query: 120 EKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMC 179
KLENEL++YRTNLIKESIRMGYNDFGDFYYA G LGDAFK+Y+RTRDYCTT+KHIIHMC
Sbjct: 120 VKLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNYIRTRDYCTTTKHIIHMC 179
Query: 180 MSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFL 239
M+AILVSIEMGQFTHVTSYV+KAEQ PE LEP+ AKLRCA+GLAHLE +KYKLAARKFL
Sbjct: 180 MNAILVSIEMGQFTHVTSYVNKAEQNPETLEPMVNAKLRCASGLAHLELKKYKLAARKFL 239
Query: 240 EVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELI 299
+V P+LGNSYNEVIA QD+ATYGGLCALASFDR+ELK KVIDN+NFRNFLELVP+VRELI
Sbjct: 240 DVNPELGNSYNEVIAPQDIATYGGLCALASFDRSELKQKVIDNINFRNFLELVPDVRELI 299
Query: 300 NDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMA 359
NDFYSSRYASCL+YL +LK+NLLLDIHLHDHV+TLYDQIR KALIQYT PFVSVDL MA
Sbjct: 300 NDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMA 359
Query: 360 NAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDV 419
+AFKTSV+G+EKELEALITDNQIQARIDSHNKILYARHADQRNATFQ+VLQ G+EFD+DV
Sbjct: 360 DAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDV 419
Query: 420 RAMLLRANLLKHEYNVRAARKL 441
RAMLLRANLLKHEY+ R+ARKL
Sbjct: 420 RAMLLRANLLKHEYHARSARKL 441
>sp|Q54QX3|CSN1_DICDI COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum
GN=csn1 PE=1 SV=1
Length = 458
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/407 (48%), Positives = 288/407 (70%), Gaps = 7/407 (1%)
Query: 34 QLDVEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIKKGENTQLFREVVKKI 93
+ D+E Y + Y G TKI RL+FIAD+C +++EA MA E++K N +L+ ++ K
Sbjct: 29 EFDLETYINNYSGFTKIHRLIFIADNC--KQLEVEAYNMALKEVQKTPNLELYNTIINKS 86
Query: 94 DGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHG 153
G L +D + +++ ++ + +KLE +LN ++N++K+SIR ND G+FYY G
Sbjct: 87 HGIL----ELDPVYIENLSKKNSLQLDKLEQDLNTAKSNMVKDSIRFAQNDLGEFYYKIG 142
Query: 154 ALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVT 213
+A K ++RTRDYCTTSKH++ MC + I + ++ +TH SY++KAEQ+P+ L+ V+
Sbjct: 143 DHQNALKCFIRTRDYCTTSKHVLAMCFNIIKLGVDTQNYTHAPSYIAKAEQSPD-LDNVS 201
Query: 214 IAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRA 273
AKLR GL +L+ +YKLAARKF+E + N ++++I+ QD+A YGGLCALA+FDR
Sbjct: 202 NAKLRSVNGLYNLDGSRYKLAARKFIETPFEQSNVFSDIISPQDIAYYGGLCALATFDRN 261
Query: 274 ELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVET 333
ELK KVID+ F+N+LELVPE+RELINDFY+++Y SCL YL +K LLLDIHL+ HVE
Sbjct: 262 ELKKKVIDDPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEI 321
Query: 334 LYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKIL 393
LY +IR+KAL+QY P+ SVD+++MA+AF T+V +EKE+ LI +N+IQARIDSHNK L
Sbjct: 322 LYQRIRSKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSHNKRL 381
Query: 394 YARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRAARK 440
YAR ADQR TF++ +Q GS+F ++LLR +L + + + RK
Sbjct: 382 YARKADQRTTTFEKTVQVGSDFQNSSNSLLLRLEMLNNNISTVSNRK 428
>sp|Q6NRT5|CSN1_XENLA COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2
SV=1
Length = 487
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/436 (45%), Positives = 285/436 (65%), Gaps = 28/436 (6%)
Query: 29 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIKKGENTQLFRE 88
++ LD+E YAS Y G +I RL FIAD C +++EAL+MA +++ N ++ +
Sbjct: 36 VVENPTLDLEQYASSYSGLMRIERLQFIADRC--PQLRVEALKMALSFVQRTFNVDVYED 93
Query: 89 VVKKI---------------DGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNL 133
+ +K+ +G + P A+D +W ++ ++A + EKL+ +L Y+ N
Sbjct: 94 IHRKLAEASREVQNAPDAVPEGSMEPP-ALDTSWVEATRKKALLKLEKLDTDLKNYKGNS 152
Query: 134 IKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFT 193
IKESIR G++D GD Y G L +A K Y R RDYCT++KH+I+MC++ I VS+ + ++
Sbjct: 153 IKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWS 212
Query: 194 HVTSYVSKAEQTPEALEP---------VTIAKLRCAAGLAHLEARKYKLAARKFLEVGPD 244
HV SYVSKAE TPE E + KL+CAAGLA L ARKYK AA+ FL D
Sbjct: 213 HVLSYVSKAESTPEIAEQRGERDSQTQAVLTKLKCAAGLAELAARKYKQAAKCFLLASFD 272
Query: 245 LGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYS 304
+ + E+++ +VA YGGLCALA+FDR EL+ VI + +F+ FLEL P+VR++I FY
Sbjct: 273 HCD-FPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYE 331
Query: 305 SRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKT 364
S+YASCL L +K NLLLD++L HV TLY QIRN+ALIQY P+VS D++ MA AF T
Sbjct: 332 SKYASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNT 391
Query: 365 SVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLL 424
+V+ +E EL LI + I ARIDSH+KILYAR DQR+ TF++ LQ G EF + +AM+L
Sbjct: 392 TVSALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMGREFQRRAKAMIL 451
Query: 425 RANLLKHEYNVRAARK 440
RA +L+++ +V++ +
Sbjct: 452 RAAVLRNQIHVKSPPR 467
>sp|Q13098|CSN1_HUMAN COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1
SV=4
Length = 491
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/441 (45%), Positives = 283/441 (64%), Gaps = 34/441 (7%)
Query: 29 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIKKGENTQLFRE 88
++ LD+E YA+ Y G +I RL FIADHC ++++EAL+MA +++ N ++ E
Sbjct: 36 VVENPSLDLEQYAASYSGLMRIERLQFIADHC--PTLRVEALKMALSFVQRTFNVDMYEE 93
Query: 89 VVKKID--------------------GRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNA 128
+ +K+ G P A+D AW ++ ++A + EKL+ +L
Sbjct: 94 IHRKLSEATRSSLRELQNAPDAIPESGVEPP--ALDTAWVEATRKKALLKLEKLDTDLKN 151
Query: 129 YRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE 188
Y+ N IKESIR G++D GD Y G L +A K Y R RDYCT++KH+I+MC++ I VS+
Sbjct: 152 YKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVY 211
Query: 189 MGQFTHVTSYVSKAEQTPEALEP---------VTIAKLRCAAGLAHLEARKYKLAARKFL 239
+ ++HV SYVSKAE TPE E + KL+CAAGLA L ARKYK AA+ L
Sbjct: 212 LQNWSHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCLL 271
Query: 240 EVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELI 299
D + + E+++ +VA YGGLCALA+FDR EL+ VI + +F+ FLEL P+VR++I
Sbjct: 272 LASFDHCD-FPELLSPSNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDII 330
Query: 300 NDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMA 359
FY S+YASCL L +K NLLLD++L HV TLY QIRN+ALIQY P+VS D+H MA
Sbjct: 331 FKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMA 390
Query: 360 NAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDV 419
AF T+VA +E EL LI + I AR+DSH+KILYAR DQR+ TF++ L G EF +
Sbjct: 391 AAFNTTVAALEDELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRA 450
Query: 420 RAMLLRANLLKHEYNVRAARK 440
+AM+LRA +L+++ +V++ +
Sbjct: 451 KAMMLRAAVLRNQIHVKSPPR 471
>sp|Q99LD4|CSN1_MOUSE COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1
SV=1
Length = 471
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/437 (45%), Positives = 281/437 (64%), Gaps = 30/437 (6%)
Query: 29 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIKKGENTQLFRE 88
++ LD+E YA+ Y G +I RL FIAD C +++EAL+MA +++ N ++ E
Sbjct: 20 VVENPTLDLEQYAASYSGLMRIERLQFIADRC--PPLRVEALKMALSFVQRTFNVDMYEE 77
Query: 89 VVKKID----------------GRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTN 132
+ +K+ G P +D AW ++ ++A + EKL+ +L Y+ N
Sbjct: 78 IHRKLSEATRELQNAPDAIPESGVEPP--PLDTAWVEATRKKALLKLEKLDTDLKNYKGN 135
Query: 133 LIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQF 192
IKESIR G++D GD Y G L +A K Y R RDYCT++KH+I+MC++ I VS+ + +
Sbjct: 136 SIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNW 195
Query: 193 THVTSYVSKAEQTPEALEP---------VTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243
+HV SYVSKAE TPE E + KL+CAAGLA L ARKYK AA+ FL
Sbjct: 196 SHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASF 255
Query: 244 DLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFY 303
D + + E+++ +VA YGGLCALA+FDR EL+ VI + +F+ FLEL P+VR++I FY
Sbjct: 256 DHCD-FPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFY 314
Query: 304 SSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFK 363
S+YASCL L +K NLLLD++L HV TLY QIRN+ALIQY P+VS D+H MA AF
Sbjct: 315 ESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFN 374
Query: 364 TSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAML 423
T+VA +E EL LI + I ARIDSH+KILYAR DQR+ TF++ L G EF + +AM+
Sbjct: 375 TTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMI 434
Query: 424 LRANLLKHEYNVRAARK 440
LRA +L+++ +V++ +
Sbjct: 435 LRAAVLRNQIHVKSPPR 451
>sp|P97834|CSN1_RAT COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1
PE=1 SV=1
Length = 471
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/437 (45%), Positives = 281/437 (64%), Gaps = 30/437 (6%)
Query: 29 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIKKGENTQLFRE 88
++ LD+E YA+ Y G +I RL FIAD C +++EAL+MA +++ N ++ E
Sbjct: 20 VVENPTLDLEQYAASYSGLMRIERLQFIADRC--PPLRVEALKMALSFVQRTFNVDMYEE 77
Query: 89 VVKKID----------------GRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTN 132
+ +K+ G P +D AW ++ ++A + EKL+ +L Y+ N
Sbjct: 78 IHRKLSEATRELQNAPDAIPESGVEPP--PLDTAWVEATRKKALLKLEKLDTDLKNYKGN 135
Query: 133 LIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQF 192
IKESIR G++D GD Y G L +A K Y R RDYCT++KH+I+MC++ I VS+ + +
Sbjct: 136 SIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNW 195
Query: 193 THVTSYVSKAEQTPEALEP---------VTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243
+HV SYVSKAE TPE E + KL+CAAGLA L ARKYK AA+ FL
Sbjct: 196 SHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASF 255
Query: 244 DLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFY 303
D + + E+++ +VA YGGLCALA+FDR EL+ VI + +F+ FLEL P+VR++I FY
Sbjct: 256 DHCD-FPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFY 314
Query: 304 SSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFK 363
S+YASCL L +K NLLLD++L HV TLY QIRN+ALIQY P+VS D+H MA AF
Sbjct: 315 ESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFN 374
Query: 364 TSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAML 423
T+VA +E EL +I + I ARIDSH+KILYAR DQR+ TF++ L G EF + +AM+
Sbjct: 375 TTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMI 434
Query: 424 LRANLLKHEYNVRAARK 440
LRA +L+++ +V++ +
Sbjct: 435 LRAAVLRNQIHVKSPPR 451
>sp|Q9VVU5|CSN1_DROME COP9 signalosome complex subunit 1b OS=Drosophila melanogaster
GN=CSN1b PE=2 SV=1
Length = 525
Score = 357 bits (915), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 189/464 (40%), Positives = 280/464 (60%), Gaps = 58/464 (12%)
Query: 29 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIKKGENTQLFRE 88
++ +D+E YA+ Y G ++ RL+++AD C + + +EAL+MA ++ N L++
Sbjct: 37 VVENPSIDLEVYANQYAGIVRLHRLIYVADVCPV--LAVEALKMAITYVQTTYNVNLYQV 94
Query: 89 VVKKIDGRLGPN------------------------------------------------ 100
+ K++ N
Sbjct: 95 LHKRLSDLNAGNAPAPPANAGGDQAGAAAPGPLAAAPLPDIAAQPVAQAQGQAQPAVEKD 154
Query: 101 -YAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF 159
+A D AW D+ ++A + EKL+++L Y++N IKESIR G++D D Y + G L +A
Sbjct: 155 AFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDLADHYLSCGDLTNAL 214
Query: 160 KSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIA---- 215
K Y R RDYCT+ KH+++MC++ I VSI + + HV SY+SKAE TP+ E A
Sbjct: 215 KCYSRARDYCTSGKHVVNMCLNVIKVSIYLQNWAHVMSYISKAESTPDFAEGSKEANAQV 274
Query: 216 --KLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRA 273
+L CAAGLA L+ +KYK+AA+ FL D + + E+I+ +VA YGGLCALA+FDR
Sbjct: 275 HTRLECAAGLAELQQKKYKVAAKHFLNANFDHCD-FPEMISTSNVAVYGGLCALATFDRQ 333
Query: 274 ELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVET 333
ELK VI + +F+ FLEL P++R++I FY S+YASCL L ++ NLL+D+++ HV T
Sbjct: 334 ELKRLVIASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTT 393
Query: 334 LYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKIL 393
LY +IRN+ALIQY P++S D+H MA AF +SV +E E+ LI D QIQARIDSHNKIL
Sbjct: 394 LYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKIL 453
Query: 394 YARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRA 437
+A+ ADQRN+TF+R L G ++ + R ++LRA +LK +V++
Sbjct: 454 FAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVKS 497
>sp|Q5BD89|CSN1_EMENI COP9 signalosome complex subunit 1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnA PE=1 SV=2
Length = 498
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 163/451 (36%), Positives = 243/451 (53%), Gaps = 24/451 (5%)
Query: 6 EQSNSMMEEICSNGGEESARTRPIISGEQ---LDVEAYASLYQGRTKITRLMFIADHCDI 62
+ S SM + G S P++ E+ ++E+Y + Y GRT+ RL I C
Sbjct: 20 QASGSMGVDPDPITGLVSTSAAPLVRVEEAPKFELESYIANYTGRTRFNRLYLIGT-CS- 77
Query: 63 ASMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPN---YAMDEAWCDSVDRRAEQRK 119
+ + ++AL+ A E K G++ + V+ + + PN +D W + + +
Sbjct: 78 SYLAVDALKAAIAEAKSGKDVARYLRAVQAL-ADVAPNEPEATIDSDWVERSQKVVKAET 136
Query: 120 EKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMC 179
++LE+EL Y+ NLIKESIRMG + G Y+ G L AFK+Y R RD+CTT HI M
Sbjct: 137 DRLEHELRGYKNNLIKESIRMGNEELGQHYHRIGDLTSAFKAYSRMRDFCTTPSHIASML 196
Query: 180 MSAILVSIEMGQFTHVTSYVSKAEQ---TPEALEPVTIAKLRCAAGLAHLEARKYKLAAR 236
I V+IE G + +V S V + PE + K+ A GL+ L + Y AA
Sbjct: 197 FKIINVAIERGDWLNVQSNVHRLRSQGGKPEE-QAKHQPKISAAMGLSQLHSGSYLEAAN 255
Query: 237 KFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVR 296
F+ P LG+++NEV+ + DVA YGGLCALAS DR EL+ +V+DN +FRNFLEL P +R
Sbjct: 256 SFIATDPSLGDTFNEVLTSNDVAVYGGLCALASMDRNELQRRVLDNSSFRNFLELEPHIR 315
Query: 297 ELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLH 356
I+ F +S++ CL+ L +A+ LLDIHL HV+ LY++IR K++ QY PF V L
Sbjct: 316 RAISFFCNSKFRPCLEILEAYRADYLLDIHLQRHVQVLYNRIRTKSIQQYLIPFNRVSLE 375
Query: 357 MMANAF-----------KTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATF 405
MA F S + +EL +LI D + ARID +L + D+R
Sbjct: 376 SMAKIFVLGNPTSQSSQSDSKSAFVQELISLIQDGTLDARIDLEKHVLVSTQGDKRIEVQ 435
Query: 406 QRVLQTGSEFDQDVRAMLLRANLLKHEYNVR 436
+ VL + + ++ LLR+N+++ VR
Sbjct: 436 EAVLDSLDNYVREAHLRLLRSNIIRAGLEVR 466
>sp|Q7RXQ1|CSN1_NEUCR COP9 signalosome complex subunit 1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-1 PE=1 SV=1
Length = 425
Score = 206 bits (525), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 212/409 (51%), Gaps = 33/409 (8%)
Query: 43 LYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYA 102
+ +GRT+ RL I + ++AL+ A E K G + ++ V + + PN
Sbjct: 19 IVKGRTRFERLFHIGRSS--VPLCVDALKAAVQEAKAGSDILRYQMAVNSL-FQAAPNEP 75
Query: 103 ---MDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF 159
+D+AW +S ++ L+ EL Y+ NLIKESIRMG D G + A G + A
Sbjct: 76 EALLDKAWMESKEKENRDTTAHLQAELQGYKNNLIKESIRMGNEDLGKHFEAIGDVEAAM 135
Query: 160 KSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQF----THVTSYVSKAEQTPEALEPVTIA 215
S+ + R ++++ ++ + + V+IE + H+ S + P+A T +
Sbjct: 136 DSFWKMRTEVSSTEQLVDLGKLLVRVAIERRDWKSIGNHLKPLNSVNDSDPKAKALKTYS 195
Query: 216 KLRCAAGLAHLEARKYKLAARKFLE----VGPDLGNSYNEVIAAQDVATYGGLCALASFD 271
K+ A G+A L +YK AA F+E V P++ YN++ + DVA YGGL ALA+ D
Sbjct: 196 KI--ANGIAALGQERYKEAAFCFVEASSGVPPEI---YNQIASPNDVAIYGGLLALATMD 250
Query: 272 RAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHV 331
R EL++ ++DN +FR FL+ P +R I F + RYA+C++ L + + + LLDI+L HV
Sbjct: 251 RHELQANLLDNDSFREFLQREPHIRRAITQFVNGRYAACIEILESYRPDYLLDIYLQKHV 310
Query: 332 ETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391
LY IR K+++QY PF V L M AF IE EL +I D ++ ARID+ NK
Sbjct: 311 PKLYADIRTKSIVQYLKPFSCVRLDTMQKAFNGPGPSIEDELFTMIKDGKLNARIDAINK 370
Query: 392 ILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRAARK 440
+ LQT +++ + R N++ + V+ +RK
Sbjct: 371 --------------SKALQTLENYEKQALDRIRRMNIMAADLEVKGSRK 405
>sp|O94308|CSN1_SCHPO COP9 signalosome complex subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn1 PE=1 SV=1
Length = 422
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 179/362 (49%), Gaps = 8/362 (2%)
Query: 34 QLDVEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIK-KGENTQLFREVVKK 92
Q +++ Y Y +KI R +F+A + ++ + A E+K K N +L++ + ++
Sbjct: 9 QEELKRYLDEYGVWSKIFRALFVARNS--KPLRSFCVHYAIKELKEKTYNLELYQSLFEE 66
Query: 93 IDGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAH 152
N +D W +SV +Q E+L EL AY+ NLI+ESIR D F+
Sbjct: 67 FQDCF-ENEQLDVEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIRAAQLDLASFFADV 125
Query: 153 GALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPV 212
G A +SY + R+YCT + I H+ + + +SI +G ++HV ++ S+A+ T A +
Sbjct: 126 GQFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIGNYSHVLAFGSRAKSTVSAAMEL 185
Query: 213 TIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDR 272
T + + GLA+ Y+ A FL+V D + +I D++ Y LCALA +D
Sbjct: 186 T-SPIYAYCGLANFCLGDYEEALAHFLKVETDTSDG---IITKTDISVYISLCALACWDH 241
Query: 273 AELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVE 332
L ++ N F +L P +R + + +Y+ LD L + LD++L +
Sbjct: 242 KRLIQELERNEEFNALSDLDPSLRRCLQAKCNRKYSLLLDTLQQNAQDYSLDMYLAPQLT 301
Query: 333 TLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKI 392
L+ IR ++L+ Y P+ ++ +A F IEK L +I ++ ++DS K
Sbjct: 302 NLFSLIRERSLLDYLIPYSALPFSKIAVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKR 361
Query: 393 LY 394
+Y
Sbjct: 362 VY 363
>sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans
GN=csn-1 PE=1 SV=1
Length = 601
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 196/448 (43%), Gaps = 57/448 (12%)
Query: 35 LDVEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIKKGEN---------TQL 85
+D+E+ A Y R FIA HC I ++ +A + +K+ +L
Sbjct: 84 IDIESLACSYDSNAFFLRARFIARHCPI--LRADAYISLINYLKEHTTDITHYVAFFNEL 141
Query: 86 FREVVKKIDGRLGPNYAM---DEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGY 142
E+ +K N+ + D+ W + + ++L+ E ++ +KES R
Sbjct: 142 ESELARKEFKNRQLNFQIPLRDQKWIEENGATWQSTTDQLQAEYKRHKDEGVKESTRRAM 201
Query: 143 NDFGDFYYAHGALGDAFKSYVR-TRDYCTTSKHIIHMCMSAILVSI---EMGQFTHVT-- 196
D Y G + +A + Y R RDYCT KH I+M ++ + V+I + G+ VT
Sbjct: 202 EDLFQHYMMAGKIDEAIRLYSRGIRDYCTQLKHSINMWINWMEVAICANDWGKLDTVTNT 261
Query: 197 SYVS--------------------KAEQTPEALE-----PV-----------TIAKLRCA 220
+Y S + E P +E P+ +AK A
Sbjct: 262 AYRSLKDADDAEKNSQQSQQAPPQRGENAPYMVERDPNAPIQTLTNRQLIETALAKCLAA 321
Query: 221 AGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVI 280
L L ++Y L++ + S + + D+ YG L A+A+ RA+LK +V
Sbjct: 322 QVLLKLRNKRYSQVVETILQIKTECLQS-KWFVTSSDLGIYGMLSAMATMSRADLKLQVS 380
Query: 281 DNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRN 340
N FR LE P++ EL+ + SSR+ C + + ++K LLLD + +V+ L+++IR
Sbjct: 381 GNGTFRKLLESEPQLIELLGSYTSSRFGRCFEIMRSVKPRLLLDPFISRNVDELFEKIRQ 440
Query: 341 KALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQ 400
K ++QY P+ ++ + MA A S A ++ L LI + +ID + I+
Sbjct: 441 KCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQKHVSLKIDQNEGIVRILDERD 500
Query: 401 RNATFQRVLQTGSEFDQDVRAMLLRANL 428
NA +RV T Q +++L + L
Sbjct: 501 ENAILKRVNVTCDRATQKAKSLLWKTTL 528
>sp|Q20585|PSMD6_CAEEL 26S proteasome non-ATPase regulatory subunit 6 OS=Caenorhabditis
elegans GN=rpn-7 PE=3 SV=1
Length = 410
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 142/308 (46%), Gaps = 13/308 (4%)
Query: 115 AEQRK-EKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSK 173
A Q+K +++ E+ NL + +R G ++Y G +A K+Y T +
Sbjct: 90 ANQKKIDEITAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGMG 149
Query: 174 HIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEPVTIAKLRCAAGLAHLEARKYK 232
+ I + + I V + + +++KA++ E + +LR L + R +
Sbjct: 150 YRIDVVFAMIRVGLFFLDHHLINKFITKAKELMEQGGDWERKNRLRSYEALYRMSVRDFA 209
Query: 233 LAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLE-- 290
AA FLE P G SY E++ +++ Y + + DR +L++KVI + L
Sbjct: 210 GAADLFLEAVPTFG-SY-ELMTYENLILYTVITTTFALDRPDLRTKVIRCNEVQEQLTGG 267
Query: 291 -----LVPEVRELINDFYSSRYASCLDYLGNLKANLL-LDIHLHDHVETLYDQIRNKALI 344
L+P VRE + +Y Y L L++ D +L H +R++A
Sbjct: 268 GLNGTLIP-VREYLESYYDCHYDRFFIQLAALESERFKFDRYLSPHFNYYSRGMRHRAYE 326
Query: 345 QYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNAT 404
Q+ P+ +V + MMA F S A I++EL LI Q+Q RID+ N ++ H D +N
Sbjct: 327 QFLTPYKTVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHL 386
Query: 405 FQRVLQTG 412
++ V++ G
Sbjct: 387 YKAVIKDG 394
>sp|Q93Y35|PSMD6_ARATH Probable 26S proteasome non-ATPase regulatory subunit 6
OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1
Length = 387
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 2/197 (1%)
Query: 216 KLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAEL 275
+L+ GL + R +K AA FL+ +Y E+ + Y L ++ + DR L
Sbjct: 177 RLKVYEGLYCMSTRNFKKAASLFLDSISTF-TTY-EIFPYETFIFYTVLTSIITLDRVSL 234
Query: 276 KSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLY 335
K KV+D L +P + E +N Y +Y + + + D +L+ H
Sbjct: 235 KQKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYM 294
Query: 336 DQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYA 395
++R Q+ + SV + MA AF SV I++EL I ++ +ID +L
Sbjct: 295 REVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLET 354
Query: 396 RHADQRNATFQRVLQTG 412
D +NA +Q ++ G
Sbjct: 355 NRPDAKNALYQATIKQG 371
>sp|Q8W425|PSMD6_ORYSJ 26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa
subsp. japonica GN=RPN7 PE=2 SV=1
Length = 389
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 2/197 (1%)
Query: 216 KLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAEL 275
+L+ GL + R +K AA FL+ +Y E+ Y L ++ S DR L
Sbjct: 179 RLKVYEGLYCMATRNFKKAASLFLDSISTF-TTY-ELFPYDTFIFYTVLTSVISLDRVSL 236
Query: 276 KSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLY 335
K+KV+D + VP + E +N Y+ +Y S L + LD +L H
Sbjct: 237 KAKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYM 296
Query: 336 DQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYA 395
++R Q+ + SV + MA+AF +V I+ EL I ++ +ID +L
Sbjct: 297 REVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLET 356
Query: 396 RHADQRNATFQRVLQTG 412
D RNA +Q ++ G
Sbjct: 357 NRPDARNAFYQATIKQG 373
>sp|Q55C75|PSMD6_DICDI 26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium
discoideum GN=psmD6 PE=1 SV=1
Length = 382
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 147/341 (43%), Gaps = 13/341 (3%)
Query: 83 TQLFREVVKKIDG-RLGPNYAM---------DEAWCDSVDRRAEQRKEKLENELNAYRTN 132
T+ + +++K+I+ ++ P Y + D+ + E + L+N++ N
Sbjct: 28 TESYNKLIKEIETHKMLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVEN 87
Query: 133 LIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQF 192
+ IR Y DFY G A + Y +T + + + + I + I
Sbjct: 88 FGESEIREAYLAKSDFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLIRMGIFWMDH 147
Query: 193 THVTSYVSKAEQ-TPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNE 251
VT + KA+ E + +L+ + + R++K A+ +LE ++ E
Sbjct: 148 DIVTRNLEKAQSLVEEGGDWDRKNRLKTYEAVYKMSIRQFKEASDLYLETVASFTST--E 205
Query: 252 VIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCL 311
I Y +L DR LK KVID+ + + + P++++L+ FY+ YA+
Sbjct: 206 FIDYSRFIQYLIFTSLLHLDRVSLKQKVIDSPDVLSVINDTPKLQDLLQSFYNGDYANFF 265
Query: 312 DYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEK 371
L + ++ D +L +H ++R A Q+ + SV L M+N F S I++
Sbjct: 266 GALAHFSDSIKGDRYLAEHSRFFTREMRILAYNQFLESYSSVKLESMSNQFGVSYDFIDR 325
Query: 372 ELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTG 412
EL + ++ +ID + ++ +D +N ++ LQ G
Sbjct: 326 ELSRFVAAGRLNCKIDKVSGVIETTRSDAKNHLYKTTLQQG 366
>sp|Q06103|RPN7_YEAST 26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN7 PE=1 SV=3
Length = 429
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 9/189 (4%)
Query: 233 LAARKFLEVGPDLGNSYN-----EVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRN 287
LA R F E L +S E+ + + +ATY + L + +R +LKSKVID+ +
Sbjct: 219 LAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLS 278
Query: 288 FLEL---VPEVRELINDFYSSRYASCLDYLGNLKANLLLDI-HLHDHVETLYDQIRNKAL 343
+ + + L Y+S YAS YL AN+L+ +L+ H + ++R K
Sbjct: 279 LISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVY 338
Query: 344 IQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNA 403
Q + ++ L MA+AF SVA ++ +L I + Q+ ID N I+ D +NA
Sbjct: 339 AQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNA 398
Query: 404 TFQRVLQTG 412
+ +++ G
Sbjct: 399 QYHLLVKQG 407
>sp|Q15008|PSMD6_HUMAN 26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens
GN=PSMD6 PE=1 SV=1
Length = 389
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 132/332 (39%), Gaps = 18/332 (5%)
Query: 94 DGRLGPNYAMDEAWCDSVDRRA------------EQRKEKLENELNAYRTNLIKESIRMG 141
D + P Y EA C S+D + E ++L+ EL NL + IR
Sbjct: 47 DNNMAPYY---EALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDA 103
Query: 142 YNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSK 201
++ G A ++ +T D H + + + + + +T K
Sbjct: 104 MMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEK 163
Query: 202 AEQ-TPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVAT 260
A+ E + +L+ GL + R +K AA FL+ SY E++ + T
Sbjct: 164 AKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTF-TSY-ELMDYKTFVT 221
Query: 261 YGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKAN 320
Y ++ + +R +L+ KVI L +P VR+ + Y RY+ L ++
Sbjct: 222 YTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQE 281
Query: 321 LLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDN 380
+ D H ++R A Q + S+ L MA AF V I++EL I
Sbjct: 282 MKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAG 341
Query: 381 QIQARIDSHNKILYARHADQRNATFQRVLQTG 412
++ +ID N+I+ D +N +Q ++ G
Sbjct: 342 RLHCKIDKVNEIVETNRPDSKNWQYQETIKKG 373
>sp|Q3T0B2|PSMD6_BOVIN 26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus
GN=PSMD6 PE=2 SV=1
Length = 389
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 127/314 (40%), Gaps = 3/314 (0%)
Query: 101 YAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFK 160
+ MD + + + E ++L+ EL NL + IR ++ G A
Sbjct: 63 WQMDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALT 122
Query: 161 SYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQ-TPEALEPVTIAKLRC 219
++ RT D H + + + + + +T KA+ E + +L+
Sbjct: 123 AFRRTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKV 182
Query: 220 AAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKV 279
GL + R +K AA FL+ SY E++ + TY ++ + +R +L+ KV
Sbjct: 183 YQGLYCVAIRDFKQAAELFLDTVSTF-TSY-ELMDYKTFVTYTVYVSMIALERPDLREKV 240
Query: 280 IDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIR 339
I L +P VR+ + Y RY+ L ++ + D H ++R
Sbjct: 241 IKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHYRYYVREMR 300
Query: 340 NKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHAD 399
A Q + S+ L MA AF V I++EL I ++ +ID N+++ D
Sbjct: 301 IHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEVVETNRPD 360
Query: 400 QRNATFQRVLQTGS 413
+N +Q ++ G
Sbjct: 361 SKNWQYQETIKKGG 374
>sp|Q99JI4|PSMD6_MOUSE 26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus
GN=Psmd6 PE=1 SV=1
Length = 389
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 128/314 (40%), Gaps = 3/314 (0%)
Query: 100 NYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF 159
++ MD + + E+ ++L+ EL NL + IR ++ G A
Sbjct: 62 DWQMDVDLLSKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGAL 121
Query: 160 KSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQ-TPEALEPVTIAKLR 218
++ +T D H + + + + + +T KA+ E + +L+
Sbjct: 122 TAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLK 181
Query: 219 CAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSK 278
GL + R +K AA FL+ SY E++ + TY ++ + +R +L+ K
Sbjct: 182 VYQGLYCVAIRDFKQAAELFLDTVSTF-TSY-ELMDYKTFVTYTVYVSMIALERPDLREK 239
Query: 279 VIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQI 338
VI L +P VR+ + Y RY+ L ++ + D H ++
Sbjct: 240 VIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHYRYYVREM 299
Query: 339 RNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398
R A Q + S+ L MA AF V I++EL I ++ +ID N+I+
Sbjct: 300 RIHAYSQLLESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEIVETNRP 359
Query: 399 DQRNATFQRVLQTG 412
D +N +Q ++ G
Sbjct: 360 DSKNWQYQETIKKG 373
>sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila
melanogaster GN=Rpn7 PE=2 SV=1
Length = 389
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 2/197 (1%)
Query: 216 KLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAEL 275
+L+ G+ + R +K AA FL+ SY E++ Y A+ + R EL
Sbjct: 179 RLKVYQGVYSVAVRDFKAAATFFLDTVSTF-TSY-ELMDYPTFVRYTVYVAMIALPRNEL 236
Query: 276 KSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLY 335
+ KVI + L +P+V++ + Y+ +Y + +L ++ L LD +H H
Sbjct: 237 RDKVIKGSEIQEVLHGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHYRYYV 296
Query: 336 DQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYA 395
++R Q + S+ L MA +F +V I++EL I ++ A++D I+
Sbjct: 297 REMRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVET 356
Query: 396 RHADQRNATFQRVLQTG 412
D +N +Q ++ G
Sbjct: 357 NRPDNKNWQYQATIKQG 373
>sp|Q10335|RPN7_SCHPO Probable 26S proteasome regulatory subunit rpn7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn7 PE=2 SV=1
Length = 409
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 6/201 (2%)
Query: 216 KLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAEL 275
+L+ G+ + R + AA L+ ++ E++ DV Y + S DR ++
Sbjct: 190 RLKAYQGIYLMSIRNFSGAADLLLDCMSTFSST--ELLPYYDVVRYAVISGAISLDRVDV 247
Query: 276 KSKVIDNVNFRNFL---ELVPEVRELINDFYSSRYASCLDYLGNLKAN-LLLDIHLHDHV 331
K+K++D+ L E + + IN Y Y+ L +++ N L D L H
Sbjct: 248 KTKIVDSPEVLAVLPQNESMSSLEACINSLYLCDYSGFFRTLADVEVNHLKCDQFLVAHY 307
Query: 332 ETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391
++R +A Q + ++ + MA +F SV I+++L + I DN++ ID N
Sbjct: 308 RYYVREMRRRAYAQLLESYRALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCVIDRVNG 367
Query: 392 ILYARHADQRNATFQRVLQTG 412
+++ D++N +Q V++ G
Sbjct: 368 VVFTNRPDEKNRQYQEVVKQG 388
>sp|P68352|CSN1_BRAOL COP9 signalosome complex subunit 1 (Fragment) OS=Brassica oleracea
GN=CSN1 PE=1 SV=1
Length = 37
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/37 (94%), Positives = 36/37 (97%), Gaps = 1/37 (2%)
Query: 372 ELEAL-ITDNQIQARIDSHNKILYARHADQRNATFQR 407
ELEAL ITDNQIQARIDSHNKILYARHADQRNATFQ+
Sbjct: 1 ELEALLITDNQIQARIDSHNKILYARHADQRNATFQK 37
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEV--------GPDLGNSYNEVIAAQDVATYG 262
P+ + +R G HL +++ A F E P ++ A + G
Sbjct: 232 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 291
Query: 263 GLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLL 322
+ FD E K ++N E++ + L+N + ++ L ++N++
Sbjct: 292 ----INPFDSQEAKP-------YKNDPEILA-MTNLVNSYQNNDINEFETILRQHRSNIM 339
Query: 323 LDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382
D + +H+E L IR + LI+ P+ ++ + +ANA A +E L + I D+ I
Sbjct: 340 ADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTI 399
Query: 383 QARIDSHNKIL 393
+ RID N++L
Sbjct: 400 KGRIDQVNQVL 410
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEV--------GPDLGNSYNEVIAAQDVATYG 262
P+ + +R G HL +++ A F E P ++ A + G
Sbjct: 231 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 290
Query: 263 GLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLL 322
+ FD E K ++N E++ + L++ + ++ L +N++
Sbjct: 291 ----INPFDSQEAKP-------YKNDPEILA-MTNLVSAYQNNDITEFEKILKTNHSNIM 338
Query: 323 LDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382
D + +H+E L IR + LI+ P+ + + ++ VA +E L I DN I
Sbjct: 339 DDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTI 398
Query: 383 QARIDSHNKILYARHADQRNATF 405
RID N++L H + A +
Sbjct: 399 HGRIDQVNQLLELDHQKRGGARY 421
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEV--------GPDLGNSYNEVIAAQDVATYG 262
P+ + +R G HL +++ A F E P ++ A + G
Sbjct: 231 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 290
Query: 263 GLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLL 322
+ FD E K ++N E++ + L++ + ++ L +N++
Sbjct: 291 ----INPFDSQEAKP-------YKNDPEILA-MTNLVSAYQNNDITEFEKILKTNHSNIM 338
Query: 323 LDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382
D + +H+E L IR + LI+ P+ + + ++ VA +E L I DN I
Sbjct: 339 DDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTI 398
Query: 383 QARIDSHNKILYARHADQRNATF 405
RID N++L H + A +
Sbjct: 399 HGRIDQVNQLLELDHQKRGGARY 421
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEV--------GPDLGNSYNEVIAAQDVATYG 262
P+ + +R G HL +++ A F E P ++ A + G
Sbjct: 231 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 290
Query: 263 GLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLL 322
+ FD E K ++N E++ + L++ + ++ L +N++
Sbjct: 291 ----INPFDSQEAKP-------YKNDPEILA-MTNLVSAYQNNDITEFEKILKTNHSNIM 338
Query: 323 LDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382
D + +H+E L IR + LI+ P+ + + ++ VA +E L I DN I
Sbjct: 339 DDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTI 398
Query: 383 QARIDSHNKILYARHADQRNATF 405
RID N++L H + A +
Sbjct: 399 HGRIDQVNQLLELDHQKRGGARY 421
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEV--------GPDLGNSYNEVIAAQDVATYG 262
P+ + +R G HL +++ A F E P ++ A + G
Sbjct: 231 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 290
Query: 263 GLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLL 322
+ FD E K ++N E++ + L++ + ++ L +N++
Sbjct: 291 ----INPFDSQEAKP-------YKNDPEILA-MTNLVSAYQNNDITEFEKILKTNHSNIM 338
Query: 323 LDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382
D + +H+E L IR + LI+ P+ + + ++ VA +E L I DN I
Sbjct: 339 DDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTI 398
Query: 383 QARIDSHNKILYARHADQRNATF 405
RID N++L H + A +
Sbjct: 399 NGRIDQVNQLLELDHQKRGGARY 421
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEV--------GPDLGNSYNEVIAAQDVATYG 262
P+ + +R G HL +++ A F E P ++ A + G
Sbjct: 229 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 288
Query: 263 GLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLL 322
+ FD E K ++N E++ + L++ + ++ L +N++
Sbjct: 289 ----INPFDSQEAKP-------YKNDPEILA-MTNLVSAYQNNDITEFEKILKTNHSNIM 336
Query: 323 LDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382
D + +H+E L IR + LI+ P+ + + ++ VA +E L I DN I
Sbjct: 337 DDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTI 396
Query: 383 QARIDSHNKILYARHADQRNATF 405
RID N++L H + A +
Sbjct: 397 HGRIDQVNQLLELDHQKRGGARY 419
>sp|Q12377|RPN6_YEAST 26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN6 PE=1 SV=3
Length = 434
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 43/240 (17%)
Query: 213 TIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDR 272
T+A+L +G+ H E + YK A F E +Y L S+++
Sbjct: 214 TVAELDLMSGILHCEDKDYKTAFSYFFE----------------SFESYHNLTTHNSYEK 257
Query: 273 A--ELKSKVIDNVNFRNFLELVPEVRELIN-----DFYSSRYA-------------SCLD 312
A LK ++ + L L+ +V+ ++N + Y SR S LD
Sbjct: 258 ACQVLKYMLLSKI----MLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLD 313
Query: 313 Y---LGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGI 369
+ L + L+ D H LYD + L + PF V++ ++ +
Sbjct: 314 FNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQV 373
Query: 370 EKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLL 429
E +L +I D +D N LY ++AT+ L+ + ++ V + +A++L
Sbjct: 374 EGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKASVL 433
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 314 LGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKEL 373
L K L D+ + H+ TLYD + + L + P+ V + +A + + + +EK+L
Sbjct: 306 LKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKL 365
Query: 374 EALITDNQIQARIDSHNKILYARHADQRNATFQRVLQT 411
+I D + +D +L + T++RVL+T
Sbjct: 366 SQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLET 403
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%)
Query: 314 LGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKEL 373
L + +A L D + H+ LYD + + LI+ PF V + +++ K S A +E++L
Sbjct: 306 LTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKL 365
Query: 374 EALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLL 429
+I D + +D +L + T++ L+T + V ++ +A L
Sbjct: 366 SQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYSKAKKL 421
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 314 LGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKEL 373
L + +A L D + H+ LYD + + LI+ PF V + +++ K S A +E++L
Sbjct: 306 LTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKL 365
Query: 374 EALITDNQIQARIDSHNKILYARHADQRNATFQRVLQT 411
+I D + +D +L + T++ L+T
Sbjct: 366 SQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALET 403
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 314 LGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKEL 373
L + +A L D + H+ LYD + + LI+ PF V + +++ K S A +E++L
Sbjct: 306 LTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKL 365
Query: 374 EALITDNQIQARIDSHNKILYARHADQRNATFQRVLQT 411
+I D + +D +L + T++ L+T
Sbjct: 366 SQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALET 403
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 314 LGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKEL 373
L + +A L D + H+ LYD + + LI+ PF V + +++ K S A +E++L
Sbjct: 306 LTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKL 365
Query: 374 EALITDNQIQARIDSHNKILYARHADQRNATFQRVLQT 411
+I D + +D +L + T++ L+T
Sbjct: 366 SQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALET 403
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%)
Query: 314 LGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKEL 373
L + KA L D +H H+ +LYD + + L + PF V++ +A + +EK+L
Sbjct: 302 LRDYKAQLEDDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKL 361
Query: 374 EALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRA 426
+I D + +D L + +A + L+T + + V ++ +R+
Sbjct: 362 SQMILDKKFAGTLDQGAGCLIIFEDPKADAIYSATLETIANMGKVVDSLYVRS 414
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%)
Query: 314 LGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKEL 373
L KA L D + H+ LYD + + LI+ PF V + ++ K S +E++L
Sbjct: 305 LTEYKAELRDDPIISTHLTKLYDNLLEQNLIRVIEPFSRVQIEHISELIKLSKGDVERKL 364
Query: 374 EALITDNQIQARIDSHNKILYARHADQRNATFQRVLQT 411
+I D + +D +L + T++ L+T
Sbjct: 365 SQMILDQKFHGILDQGEGVLIVFDEPPVDKTYEASLET 402
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 324 DIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383
D ++ H+ LYD + + LI+ PF V + +A K S +E++L +I D +
Sbjct: 316 DPIINTHLAKLYDNLLEQNLIRVIEPFSRVQITHIAGLIKLSKNDVERKLSQMILDKKFH 375
Query: 384 ARIDSHNKILYARHADQRNATFQRVLQT 411
+D +L + T++ L+T
Sbjct: 376 GILDQGEDVLIIFEEPPVDKTYEAALET 403
>sp|F6XBL2|PSD11_XENTR 26S proteasome non-ATPase regulatory subunit 11 OS=Xenopus
tropicalis GN=psmd11 PE=3 SV=2
Length = 422
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%)
Query: 314 LGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKEL 373
L + KA L D + H+ LYD + + LI+ PF V + +++ K +E++L
Sbjct: 306 LTDYKAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIDHISSLIKLPKPEVERKL 365
Query: 374 EALITDNQIQARIDSHNKILYARHADQRNATFQRVLQT 411
+I D + +D +L + T++ L+T
Sbjct: 366 SQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALET 403
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit rpn6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn6 PE=3 SV=1
Length = 421
Score = 38.5 bits (88), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 288 FLELVPEVRELINDFYSSRYA-----------------SCLDY---LGNLKANLLLDIHL 327
L V EV+ L+ ++ RYA S D+ L + K L D +
Sbjct: 258 MLNSVSEVKSLLTGKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQDYKPELASDPII 317
Query: 328 HDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARID 387
H+ +LYD + + L++ PF V++ +A S +E +L +I D +D
Sbjct: 318 RSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILD 377
Query: 388 SHNKILYARHADQRNATFQRVLQT 411
+ L Q++ T++ L+
Sbjct: 378 QGSGCLIVYDEPQQDKTYEAALEV 401
>sp|Q6FF68|FADB_ACIAD Fatty acid oxidation complex subunit alpha OS=Acinetobacter sp.
(strain ADP1) GN=fadB PE=3 SV=1
Length = 717
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 29 IISGEQLDVEAYASLYQGRTKITRLMFIADHCD--IASMQLEALRMAYDEI-KKGENTQL 85
+I GEQ EA A+ K+ + + + C + + L A+D + K G + Q
Sbjct: 465 VIRGEQTSEEAVATTVVLAQKMGKTPIVVNDCPGFLVNRVLFPYFGAFDLLLKDGADFQQ 524
Query: 86 FREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNA-YRTNL--IKESIRMGY 142
+V++K +GP Y MD D+ AE E + + Y+ ++ + E+ R+G
Sbjct: 525 IDKVMEKFGWPMGPAYLMDVVGIDTGVHGAEVMAEGFPDRMKPDYKGSIQTMYEAKRLGQ 584
Query: 143 -NDFGDFYY 150
ND G + Y
Sbjct: 585 KNDVGFYKY 593
>sp|Q66FA1|PRIB_YERPS Primosomal replication protein n OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=priB PE=3 SV=1
Length = 106
Score = 33.5 bits (75), Expect = 3.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 15 ICSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCD 61
I +G + A T I G QL VE + S +QGR + +L+ A+ +
Sbjct: 54 IVVSGQQSQALTHSITVGSQLTVEGFISCHQGRNGLNKLVLHAEQIE 100
>sp|Q1CEH1|PRIB_YERPN Primosomal replication protein n OS=Yersinia pestis bv. Antiqua
(strain Nepal516) GN=priB PE=3 SV=1
Length = 106
Score = 33.5 bits (75), Expect = 3.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 15 ICSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCD 61
I +G + A T I G QL VE + S +QGR + +L+ A+ +
Sbjct: 54 IVVSGQQSQALTHSITVGSQLTVEGFISCHQGRNGLNKLVLHAEQIE 100
>sp|Q8ZB82|PRIB_YERPE Primosomal replication protein n OS=Yersinia pestis GN=priB PE=3
SV=1
Length = 106
Score = 33.5 bits (75), Expect = 3.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 15 ICSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCD 61
I +G + A T I G QL VE + S +QGR + +L+ A+ +
Sbjct: 54 IVVSGQQSQALTHSITVGSQLTVEGFISCHQGRNGLNKLVLHAEQIE 100
>sp|Q1CBW5|PRIB_YERPA Primosomal replication protein n OS=Yersinia pestis bv. Antiqua
(strain Antiqua) GN=priB PE=3 SV=1
Length = 106
Score = 33.5 bits (75), Expect = 3.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 15 ICSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCD 61
I +G + A T I G QL VE + S +QGR + +L+ A+ +
Sbjct: 54 IVVSGQQSQALTHSITVGSQLTVEGFISCHQGRNGLNKLVLHAEQIE 100
>sp|A7FMW4|PRIB_YERP3 Primosomal replication protein n OS=Yersinia pseudotuberculosis
serotype O:1b (strain IP 31758) GN=priB PE=3 SV=1
Length = 105
Score = 33.5 bits (75), Expect = 3.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 15 ICSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCD 61
I +G + A T I G QL VE + S +QGR + +L+ A+ +
Sbjct: 53 IVVSGQQSQALTHSITVGSQLTVEGFISCHQGRNGLNKLVLHAEQIE 99
>sp|A1JIS9|PRIB_YERE8 Primosomal replication protein n OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=priB PE=3
SV=1
Length = 106
Score = 33.5 bits (75), Expect = 3.5, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 15 ICSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCD 61
I +G + A T I G QL VE + S +QGR + +L+ A+ +
Sbjct: 54 IIVSGQQSQALTHSITVGSQLTVEGFISCHQGRNGLNKLVLHAEQIE 100
>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium
discoideum GN=psmD11 PE=2 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 37/88 (42%)
Query: 324 DIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383
D +H H+ LY + + L + PF V++ +A V +E++L +I D +
Sbjct: 307 DPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMILDKKYN 366
Query: 384 ARIDSHNKILYARHADQRNATFQRVLQT 411
+D L + + F L+T
Sbjct: 367 GILDQGTGTLIVFEEQKEDKLFNCSLET 394
>sp|B3QZS0|SYH_PHYMT Histidine--tRNA ligase OS=Phytoplasma mali (strain AT) GN=hisS PE=3
SV=1
Length = 423
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 249 YNEVIAAQDVATYGGLCALASFDRAELKSKVID--NVNFRNFLELVPEVRELINDFYSSR 306
+N+ I QD+ LC+L + +++D +NFL+ VP + + +NDF R
Sbjct: 178 FNDYIKKQDIF----LCSLCKERLKKNSLRILDCKTCAQKNFLKSVPLITDYLNDFSKQR 233
Query: 307 YASCLDYLGNLKANLLLDIHL 327
+ S + L +K N + HL
Sbjct: 234 FDSVIKGLKFMKINFQICPHL 254
>sp|P54941|YXEB_BACSU Iron(3+)-hydroxamate-binding protein YxeB OS=Bacillus subtilis
(strain 168) GN=yxeB PE=1 SV=2
Length = 321
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 71 RMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRK-EKLENELNAY 129
++ D IKKGE QL +EV+ P YA D + + + E + +KLEN
Sbjct: 224 KIEQDVIKKGEMKQLSQEVI--------PEYAADYMFITDYNPKGESKTLDKLENSSIWK 275
Query: 130 RTNLIKESIRMGYNDFGDFY 149
+ +K + R+ NDF FY
Sbjct: 276 NLDAVKHN-RVFINDFDSFY 294
>sp|B9DIJ2|NANA_STACT N-acetylneuraminate lyase OS=Staphylococcus carnosus (strain TM300)
GN=nanA PE=3 SV=1
Length = 293
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 28 PIISGEQLDVEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDE--IKKGENTQL 85
P ++G +DV+ + L+ KI + + A + LE LR AY + I G + L
Sbjct: 140 PDLTGVNIDVDQFGELFN-HEKIIGVKYTAPNF----FLLERLRKAYPDKLIFSGFDEML 194
Query: 86 FREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRK 119
+ V+ +DG +G Y ++ + A+Q K
Sbjct: 195 IQAVISGVDGAIGSTYNVNGKRSRQIFELAQQGK 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,618,485
Number of Sequences: 539616
Number of extensions: 6055154
Number of successful extensions: 17851
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 17764
Number of HSP's gapped (non-prelim): 68
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)