Query 013559
Match_columns 441
No_of_seqs 174 out of 788
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_R RPN7, 26S proteasome re 100.0 7.5E-66 2.6E-70 532.3 20.3 373 49-423 25-418 (429)
2 3txn_A 26S proteasome regulato 100.0 5.6E-43 1.9E-47 354.7 26.2 280 143-427 103-391 (394)
3 4b4t_Q 26S proteasome regulato 100.0 9.6E-29 3.3E-33 250.3 27.3 290 139-429 135-433 (434)
4 4b4t_P 26S proteasome regulato 100.0 3.9E-30 1.3E-34 266.4 13.8 281 122-407 118-414 (445)
5 4b4t_O 26S proteasome regulato 99.8 1.1E-17 3.8E-22 170.2 19.3 252 147-407 84-362 (393)
6 4b4t_S RPN3, 26S proteasome re 99.5 1.6E-13 5.5E-18 141.9 18.4 248 141-398 183-448 (523)
7 1ufm_A COP9 complex subunit 4; 99.5 1.4E-14 4.6E-19 114.7 4.9 68 333-400 11-78 (84)
8 3t5x_A PCI domain-containing p 99.5 5.4E-13 1.8E-17 123.4 15.9 173 212-400 11-195 (203)
9 3t5v_B Nuclear mRNA export pro 99.2 4.9E-10 1.7E-14 115.2 20.6 239 153-398 140-429 (455)
10 3chm_A COP9 signalosome comple 98.4 1.2E-06 4.2E-11 78.0 10.2 111 280-401 46-160 (169)
11 1qqe_A Vesicular transport pro 97.9 0.0027 9.1E-08 60.4 23.0 184 137-327 75-273 (292)
12 4b0z_A RPN12, 26S proteasome r 97.8 0.00028 9.5E-09 65.9 13.4 123 258-396 99-227 (229)
13 4gcn_A Protein STI-1; structur 97.7 0.00036 1.2E-08 58.0 12.2 104 137-243 6-111 (127)
14 3ro3_A PINS homolog, G-protein 97.6 0.0015 5.2E-08 54.1 14.8 108 136-243 46-157 (164)
15 3gw4_A Uncharacterized protein 97.5 0.0017 5.9E-08 56.8 14.2 121 123-243 50-175 (203)
16 3ro2_A PINS homolog, G-protein 97.5 0.015 5.3E-07 54.0 21.7 109 135-243 179-291 (338)
17 2ifu_A Gamma-SNAP; membrane fu 97.5 0.025 8.4E-07 54.0 22.9 106 136-242 113-222 (307)
18 3edt_B KLC 2, kinesin light ch 97.5 0.0057 2E-07 55.8 17.3 108 136-243 82-197 (283)
19 3ulq_A Response regulator aspa 97.5 0.0095 3.2E-07 58.3 20.0 122 122-243 166-292 (383)
20 3ro2_A PINS homolog, G-protein 97.4 0.008 2.7E-07 56.0 18.5 113 131-243 215-331 (338)
21 3ro3_A PINS homolog, G-protein 97.4 0.0018 6.2E-08 53.6 12.5 106 138-243 8-117 (164)
22 4a1s_A PINS, partner of inscut 97.4 0.015 5.2E-07 56.9 21.1 108 136-243 220-331 (411)
23 3sf4_A G-protein-signaling mod 97.4 0.01 3.4E-07 57.5 19.4 114 130-243 218-335 (406)
24 3sf4_A G-protein-signaling mod 97.4 0.017 6E-07 55.8 21.0 109 135-243 183-295 (406)
25 3q15_A PSP28, response regulat 97.4 0.0068 2.3E-07 59.4 18.0 121 122-243 164-289 (378)
26 4gco_A Protein STI-1; structur 97.3 0.0017 6E-08 53.8 11.1 102 134-243 8-109 (126)
27 3nf1_A KLC 1, kinesin light ch 97.3 0.01 3.4E-07 55.2 17.5 108 136-243 108-223 (311)
28 3qky_A Outer membrane assembly 97.3 0.024 8.3E-07 52.2 19.9 104 140-246 16-128 (261)
29 2ifu_A Gamma-SNAP; membrane fu 97.3 0.0087 3E-07 57.2 17.2 107 136-243 73-183 (307)
30 2xev_A YBGF; tetratricopeptide 97.3 0.0022 7.6E-08 52.0 11.1 105 140-246 3-107 (129)
31 1elr_A TPR2A-domain of HOP; HO 97.2 0.005 1.7E-07 49.2 12.2 101 140-243 5-107 (131)
32 3u4t_A TPR repeat-containing p 97.2 0.03 1E-06 51.1 19.1 98 141-243 5-102 (272)
33 4a1s_A PINS, partner of inscut 97.2 0.019 6.4E-07 56.2 18.5 109 135-243 162-291 (411)
34 1qqe_A Vesicular transport pro 97.1 0.055 1.9E-06 51.1 20.8 108 136-243 114-227 (292)
35 1wi9_A Protein C20ORF116 homol 97.1 0.0013 4.6E-08 49.2 6.4 58 341-398 10-67 (72)
36 3edt_B KLC 2, kinesin light ch 97.0 0.0099 3.4E-07 54.2 13.8 108 136-243 40-155 (283)
37 3vtx_A MAMA; tetratricopeptide 97.0 0.015 5.3E-07 50.2 14.2 97 140-244 6-102 (184)
38 3gw4_A Uncharacterized protein 96.9 0.0067 2.3E-07 52.9 11.3 105 139-243 26-135 (203)
39 2dba_A Smooth muscle cell asso 96.9 0.0085 2.9E-07 49.2 11.1 99 140-243 29-127 (148)
40 3rkv_A Putative peptidylprolyl 96.9 0.0082 2.8E-07 51.2 11.1 99 140-243 12-125 (162)
41 2qfc_A PLCR protein; TPR, HTH, 96.9 0.041 1.4E-06 51.8 17.0 102 140-241 156-263 (293)
42 3ulq_A Response regulator aspa 96.8 0.01 3.5E-07 58.1 13.0 108 136-243 140-252 (383)
43 3upv_A Heat shock protein STI1 96.8 0.012 4.1E-07 47.7 11.4 96 140-243 5-100 (126)
44 3nf1_A KLC 1, kinesin light ch 96.8 0.02 7E-07 53.1 14.4 108 136-243 66-181 (311)
45 2ho1_A Type 4 fimbrial biogene 96.8 0.14 4.9E-06 46.0 19.6 98 140-243 72-169 (252)
46 2kck_A TPR repeat; tetratricop 96.8 0.014 4.7E-07 45.2 11.1 100 140-245 7-107 (112)
47 3q15_A PSP28, response regulat 96.8 0.011 3.9E-07 57.8 12.8 108 136-243 138-250 (378)
48 3uq3_A Heat shock protein STI1 96.8 0.062 2.1E-06 48.1 16.9 100 140-243 6-107 (258)
49 3gyz_A Chaperone protein IPGC; 96.8 0.021 7.3E-07 49.1 12.8 101 135-243 32-132 (151)
50 2l6j_A TPR repeat-containing p 96.7 0.0033 1.1E-07 49.3 6.8 98 140-240 5-103 (111)
51 4i17_A Hypothetical protein; T 96.7 0.3 1E-05 43.4 21.5 99 140-245 8-106 (228)
52 3u3w_A Transcriptional activat 96.7 0.17 5.9E-06 47.4 19.7 104 139-242 155-264 (293)
53 3sz7_A HSC70 cochaperone (SGT) 96.7 0.019 6.5E-07 49.0 11.8 96 140-243 12-107 (164)
54 3q49_B STIP1 homology and U bo 96.7 0.02 6.7E-07 46.7 11.4 96 140-243 10-105 (137)
55 2qfc_A PLCR protein; TPR, HTH, 96.6 0.023 7.7E-07 53.7 13.3 104 140-243 116-224 (293)
56 4ga2_A E3 SUMO-protein ligase 96.6 0.021 7.2E-07 48.4 11.7 97 136-240 28-124 (150)
57 3qky_A Outer membrane assembly 96.5 0.023 7.8E-07 52.3 12.2 107 139-245 52-178 (261)
58 4abn_A Tetratricopeptide repea 96.5 0.23 7.9E-06 50.5 20.9 96 140-244 103-208 (474)
59 2vyi_A SGTA protein; chaperone 96.5 0.049 1.7E-06 43.0 12.7 97 139-243 12-108 (131)
60 1elw_A TPR1-domain of HOP; HOP 96.5 0.034 1.2E-06 43.2 11.3 97 140-244 5-101 (118)
61 4i17_A Hypothetical protein; T 96.5 0.12 4.2E-06 46.1 16.5 100 141-244 44-146 (228)
62 1a17_A Serine/threonine protei 96.4 0.047 1.6E-06 45.6 12.7 97 139-243 13-109 (166)
63 2yhc_A BAMD, UPF0169 lipoprote 96.4 0.16 5.6E-06 45.6 17.2 104 141-247 6-128 (225)
64 2lni_A Stress-induced-phosphop 96.4 0.02 6.8E-07 45.9 9.8 96 140-243 17-112 (133)
65 2vgx_A Chaperone SYCD; alterna 96.4 0.049 1.7E-06 46.1 12.5 99 137-243 19-117 (148)
66 3uq3_A Heat shock protein STI1 96.3 0.43 1.5E-05 42.5 19.2 103 141-244 40-168 (258)
67 4eqf_A PEX5-related protein; a 96.3 0.18 6.2E-06 48.3 17.6 61 141-204 101-161 (365)
68 2vq2_A PILW, putative fimbrial 96.3 0.37 1.3E-05 41.9 18.3 97 141-243 44-141 (225)
69 2fbn_A 70 kDa peptidylprolyl i 96.3 0.046 1.6E-06 48.0 12.3 99 140-243 39-150 (198)
70 2yhc_A BAMD, UPF0169 lipoprote 96.3 0.087 3E-06 47.5 14.3 107 140-246 42-178 (225)
71 2xcb_A PCRH, regulatory protei 96.3 0.066 2.3E-06 44.5 12.5 98 138-243 17-114 (142)
72 3u3w_A Transcriptional activat 96.2 0.033 1.1E-06 52.5 11.5 103 141-243 117-224 (293)
73 3mkr_A Coatomer subunit epsilo 96.2 0.38 1.3E-05 45.4 19.0 167 66-245 64-230 (291)
74 2q7f_A YRRB protein; TPR, prot 96.1 0.39 1.3E-05 42.5 17.9 95 141-243 59-153 (243)
75 2fo7_A Synthetic consensus TPR 96.1 0.082 2.8E-06 41.7 11.9 95 141-243 3-97 (136)
76 1hz4_A MALT regulatory protein 96.1 0.48 1.6E-05 45.5 19.6 107 138-244 134-244 (373)
77 1hh8_A P67PHOX, NCF-2, neutrop 96.1 0.059 2E-06 47.4 12.0 103 140-245 38-151 (213)
78 2ho1_A Type 4 fimbrial biogene 96.1 0.74 2.5E-05 41.1 20.0 97 139-243 37-133 (252)
79 1na0_A Designed protein CTPR3; 96.0 0.092 3.1E-06 41.0 11.8 96 140-243 10-105 (125)
80 3ieg_A DNAJ homolog subfamily 96.0 0.98 3.3E-05 42.1 20.8 102 140-244 38-149 (359)
81 3mv2_B Coatomer subunit epsilo 95.9 0.22 7.7E-06 48.2 16.0 179 141-330 102-292 (310)
82 3ieg_A DNAJ homolog subfamily 95.9 0.58 2E-05 43.7 18.8 100 140-244 72-183 (359)
83 2c2l_A CHIP, carboxy terminus 95.9 0.04 1.4E-06 52.0 10.5 96 140-243 5-100 (281)
84 1hz4_A MALT regulatory protein 95.8 0.67 2.3E-05 44.5 19.3 106 137-243 91-202 (373)
85 2vq2_A PILW, putative fimbrial 95.8 0.81 2.8E-05 39.6 20.6 96 140-243 9-105 (225)
86 3u4t_A TPR repeat-containing p 95.8 0.062 2.1E-06 49.0 11.1 98 141-243 39-136 (272)
87 1p5q_A FKBP52, FK506-binding p 95.8 0.088 3E-06 51.1 12.7 101 138-243 146-258 (336)
88 1fch_A Peroxisomal targeting s 95.8 1.1 3.7E-05 42.4 20.3 25 219-243 221-245 (368)
89 2hr2_A Hypothetical protein; a 95.7 0.17 5.7E-06 44.2 12.9 103 140-243 12-130 (159)
90 1kt0_A FKBP51, 51 kDa FK506-bi 95.6 0.1 3.6E-06 53.0 13.0 100 139-243 268-379 (457)
91 2y4t_A DNAJ homolog subfamily 95.6 0.23 7.9E-06 48.8 15.1 185 140-339 178-377 (450)
92 1ihg_A Cyclophilin 40; ppiase 95.5 0.11 3.8E-06 51.4 12.5 99 140-243 224-335 (370)
93 4f3v_A ESX-1 secretion system 95.5 0.13 4.4E-06 49.3 12.4 150 140-307 103-252 (282)
94 2fo7_A Synthetic consensus TPR 95.5 0.16 5.6E-06 39.8 11.3 95 140-242 36-130 (136)
95 2xev_A YBGF; tetratricopeptide 95.5 0.068 2.3E-06 42.8 9.0 66 140-205 40-105 (129)
96 4g1t_A Interferon-induced prot 95.5 0.066 2.3E-06 53.4 10.7 103 140-243 52-166 (472)
97 2y4t_A DNAJ homolog subfamily 95.5 0.4 1.4E-05 47.0 16.3 104 133-244 137-240 (450)
98 3as5_A MAMA; tetratricopeptide 95.5 0.91 3.1E-05 37.7 16.6 96 140-243 77-172 (186)
99 4eqf_A PEX5-related protein; a 95.4 0.42 1.4E-05 45.6 15.9 95 141-243 67-161 (365)
100 1hxi_A PEX5, peroxisome target 95.4 0.13 4.5E-06 41.8 10.5 95 141-243 19-113 (121)
101 1a17_A Serine/threonine protei 95.4 0.15 5E-06 42.4 11.0 96 140-241 48-143 (166)
102 2e2e_A Formate-dependent nitri 95.3 0.12 4.1E-06 44.2 10.6 97 140-244 45-144 (177)
103 3as5_A MAMA; tetratricopeptide 95.3 0.2 7E-06 41.9 11.9 96 140-243 43-138 (186)
104 3hym_B Cell division cycle pro 95.3 1.8 6.1E-05 39.9 19.6 98 140-245 91-189 (330)
105 2q7f_A YRRB protein; TPR, prot 95.2 0.31 1.1E-05 43.1 13.5 96 140-243 92-187 (243)
106 3fp2_A TPR repeat-containing p 95.2 0.31 1.1E-05 49.0 14.9 95 140-242 311-405 (537)
107 4b4t_T 26S proteasome regulato 95.2 0.093 3.2E-06 50.0 10.0 159 217-381 61-225 (274)
108 2pl2_A Hypothetical conserved 95.1 1 3.5E-05 40.1 16.6 93 140-241 119-211 (217)
109 3vtx_A MAMA; tetratricopeptide 95.0 0.46 1.6E-05 40.5 13.4 96 140-243 40-135 (184)
110 4gyw_A UDP-N-acetylglucosamine 95.0 0.43 1.5E-05 51.7 15.9 96 140-243 10-105 (723)
111 1xnf_A Lipoprotein NLPI; TPR, 94.9 0.47 1.6E-05 42.8 13.9 98 138-243 42-139 (275)
112 3mkr_A Coatomer subunit epsilo 94.9 1.8 6.2E-05 40.7 18.4 93 140-245 102-196 (291)
113 1rz4_A Eukaryotic translation 94.8 0.091 3.1E-06 48.6 8.6 114 263-395 70-189 (226)
114 3cv0_A Peroxisome targeting si 94.7 1.8 6.3E-05 39.7 17.8 96 141-244 23-118 (327)
115 3ma5_A Tetratricopeptide repea 94.7 0.2 6.8E-06 39.0 9.3 64 140-206 8-71 (100)
116 3n71_A Histone lysine methyltr 94.7 0.19 6.3E-06 52.0 11.5 104 137-241 349-461 (490)
117 3cv0_A Peroxisome targeting si 94.6 2.1 7.1E-05 39.3 17.8 100 140-243 56-166 (327)
118 3k9i_A BH0479 protein; putativ 94.6 0.07 2.4E-06 42.7 6.5 66 136-204 24-89 (117)
119 2gw1_A Mitochondrial precursor 94.6 0.27 9.2E-06 49.0 12.2 95 140-243 7-101 (514)
120 3k9i_A BH0479 protein; putativ 94.6 0.24 8.1E-06 39.4 9.7 90 151-245 2-91 (117)
121 1xn7_A Hypothetical protein YH 94.5 0.042 1.4E-06 42.1 4.6 42 341-382 5-46 (78)
122 3hym_B Cell division cycle pro 94.3 0.27 9.2E-06 45.7 11.0 95 140-242 126-220 (330)
123 2xpi_A Anaphase-promoting comp 94.3 3.1 0.0001 42.3 19.9 95 141-243 375-469 (597)
124 2pl2_A Hypothetical conserved 94.2 0.88 3E-05 40.5 13.8 95 140-243 74-179 (217)
125 3urz_A Uncharacterized protein 94.2 0.49 1.7E-05 41.9 11.9 61 142-205 57-117 (208)
126 1na3_A Designed protein CTPR2; 94.1 0.29 9.9E-06 36.2 8.8 63 140-205 10-72 (91)
127 2if4_A ATFKBP42; FKBP-like, al 94.0 0.13 4.4E-06 50.0 8.2 99 140-243 180-292 (338)
128 1hh8_A P67PHOX, NCF-2, neutrop 93.9 0.18 6.1E-06 44.2 8.3 93 141-244 8-100 (213)
129 2k02_A Ferrous iron transport 93.8 0.056 1.9E-06 42.3 4.2 44 341-384 5-48 (87)
130 1w3b_A UDP-N-acetylglucosamine 93.7 2.7 9.1E-05 40.3 17.2 95 140-242 34-128 (388)
131 1fch_A Peroxisomal targeting s 93.7 0.41 1.4E-05 45.5 11.1 96 140-243 218-313 (368)
132 2v5f_A Prolyl 4-hydroxylase su 93.7 0.26 8.9E-06 39.0 8.1 65 141-205 7-75 (104)
133 2gw1_A Mitochondrial precursor 93.5 1.9 6.6E-05 42.6 16.1 99 136-243 234-332 (514)
134 3fp2_A TPR repeat-containing p 93.5 0.33 1.1E-05 48.8 10.4 95 137-239 23-117 (537)
135 2xpi_A Anaphase-promoting comp 93.4 0.44 1.5E-05 48.8 11.4 96 140-243 408-503 (597)
136 2kat_A Uncharacterized protein 93.2 0.44 1.5E-05 37.5 8.8 63 140-205 20-82 (115)
137 1elr_A TPR2A-domain of HOP; HO 93.0 0.28 9.6E-06 38.5 7.4 66 140-205 39-108 (131)
138 4gcn_A Protein STI-1; structur 93.0 0.75 2.6E-05 37.4 10.2 77 140-218 43-123 (127)
139 1w3b_A UDP-N-acetylglucosamine 92.8 4.7 0.00016 38.5 17.3 59 141-202 171-229 (388)
140 2kck_A TPR repeat; tetratricop 92.8 0.22 7.4E-06 38.0 6.2 65 140-205 41-106 (112)
141 4gyw_A UDP-N-acetylglucosamine 92.8 0.63 2.2E-05 50.4 11.9 96 140-243 44-139 (723)
142 2jt1_A PEFI protein; solution 92.8 0.12 4.1E-06 39.4 4.4 45 339-383 5-55 (77)
143 3urz_A Uncharacterized protein 92.7 0.94 3.2E-05 40.0 11.2 96 141-244 6-117 (208)
144 1xnf_A Lipoprotein NLPI; TPR, 92.6 0.69 2.3E-05 41.7 10.3 96 140-244 78-173 (275)
145 3upv_A Heat shock protein STI1 92.6 0.57 2E-05 37.3 8.8 63 140-205 39-101 (126)
146 2vsy_A XCC0866; transferase, g 92.3 0.79 2.7E-05 47.3 11.5 97 139-243 57-156 (568)
147 4gco_A Protein STI-1; structur 92.2 0.66 2.3E-05 37.8 8.8 63 140-205 48-110 (126)
148 2dba_A Smooth muscle cell asso 92.2 0.9 3.1E-05 36.5 9.6 64 139-205 65-128 (148)
149 3sz7_A HSC70 cochaperone (SGT) 92.1 0.61 2.1E-05 39.2 8.8 63 140-205 46-108 (164)
150 2vyi_A SGTA protein; chaperone 92.1 0.74 2.5E-05 35.8 8.8 63 140-205 47-109 (131)
151 4ga2_A E3 SUMO-protein ligase 92.1 0.13 4.6E-06 43.3 4.4 92 144-243 2-93 (150)
152 1ouv_A Conserved hypothetical 92.1 1 3.6E-05 41.0 11.0 92 140-243 7-106 (273)
153 1wao_1 Serine/threonine protei 91.6 0.24 8.3E-06 50.6 6.5 95 139-241 40-136 (477)
154 3n71_A Histone lysine methyltr 91.6 1.1 3.7E-05 46.2 11.4 100 143-243 313-421 (490)
155 2kc7_A BFR218_protein; tetratr 91.5 0.63 2.2E-05 35.2 7.5 61 142-205 3-64 (99)
156 4b4t_Q 26S proteasome regulato 91.4 2.1 7E-05 41.7 13.0 104 140-243 96-203 (434)
157 1elw_A TPR1-domain of HOP; HOP 91.4 1.1 3.7E-05 34.1 8.9 63 140-205 39-101 (118)
158 1na0_A Designed protein CTPR3; 91.4 1 3.5E-05 34.6 8.8 63 140-205 44-106 (125)
159 3gyz_A Chaperone protein IPGC; 91.2 0.82 2.8E-05 38.9 8.6 65 139-206 70-134 (151)
160 1p5q_A FKBP52, FK506-binding p 91.2 1.7 6E-05 41.7 12.0 91 139-237 196-286 (336)
161 2xcb_A PCRH, regulatory protei 91.2 1.3 4.4E-05 36.3 9.6 63 140-205 53-115 (142)
162 4abn_A Tetratricopeptide repea 90.9 0.52 1.8E-05 47.9 8.1 95 140-243 138-249 (474)
163 2vgx_A Chaperone SYCD; alterna 90.8 1 3.4E-05 37.7 8.7 63 140-205 56-118 (148)
164 3q49_B STIP1 homology and U bo 90.8 0.89 3E-05 36.3 8.1 63 140-205 44-106 (137)
165 1hxi_A PEX5, peroxisome target 90.7 0.87 3E-05 36.7 7.9 62 140-204 52-113 (121)
166 1kt0_A FKBP51, 51 kDa FK506-bi 90.5 2.2 7.4E-05 43.0 12.3 94 139-240 317-410 (457)
167 4f3v_A ESX-1 secretion system 90.4 1.5 5E-05 41.8 10.3 101 141-244 137-237 (282)
168 3rkv_A Putative peptidylprolyl 90.4 2.1 7.3E-05 35.6 10.4 63 140-205 64-126 (162)
169 2lni_A Stress-induced-phosphop 90.2 0.85 2.9E-05 35.8 7.3 63 140-205 51-113 (133)
170 2vsy_A XCC0866; transferase, g 90.0 1.7 5.7E-05 44.8 11.3 64 139-205 91-157 (568)
171 3rjv_A Putative SEL1 repeat pr 89.9 1.3 4.6E-05 39.2 9.2 91 140-243 19-117 (212)
172 1ouv_A Conserved hypothetical 89.8 2.2 7.5E-05 38.8 10.8 92 140-243 39-142 (273)
173 3qwp_A SET and MYND domain-con 89.2 2.6 8.8E-05 42.5 11.6 101 141-243 290-399 (429)
174 1qgp_A Protein (double strande 89.2 0.91 3.1E-05 34.3 6.3 55 343-398 19-76 (77)
175 3qww_A SET and MYND domain-con 88.8 2.4 8E-05 42.9 10.9 93 150-243 309-410 (433)
176 1qbj_A Protein (double-strande 88.7 1.1 3.9E-05 34.2 6.6 55 343-398 15-72 (81)
177 3qww_A SET and MYND domain-con 88.6 4.5 0.00015 40.8 12.9 71 137-207 338-413 (433)
178 2fbn_A 70 kDa peptidylprolyl i 88.3 3 0.0001 36.0 10.2 63 140-205 89-151 (198)
179 2h6f_A Protein farnesyltransfe 88.2 11 0.00038 37.0 15.3 96 140-243 132-228 (382)
180 2ond_A Cleavage stimulation fa 88.1 3.8 0.00013 38.3 11.4 97 140-245 100-199 (308)
181 2if4_A ATFKBP42; FKBP-like, al 87.4 1.1 3.7E-05 43.3 7.2 62 141-205 232-293 (338)
182 2pzi_A Probable serine/threoni 87.0 1.4 4.9E-05 46.9 8.5 94 141-243 469-562 (681)
183 2pzi_A Probable serine/threoni 86.7 17 0.00059 38.4 16.7 95 140-243 434-528 (681)
184 1xi4_A Clathrin heavy chain; a 86.5 54 0.0018 38.3 21.0 102 143-264 1053-1159(1630)
185 1ihg_A Cyclophilin 40; ppiase 86.5 6.7 0.00023 38.3 12.5 68 135-205 269-336 (370)
186 1wao_1 Serine/threonine protei 86.3 1.4 4.8E-05 44.9 7.6 94 141-242 8-101 (477)
187 3txn_A 26S proteasome regulato 85.9 17 0.00059 36.1 15.1 102 141-242 21-166 (394)
188 3tqn_A Transcriptional regulat 85.5 2 6.7E-05 34.8 6.7 64 331-396 11-75 (113)
189 2heo_A Z-DNA binding protein 1 85.3 1.1 3.8E-05 32.7 4.6 46 338-384 11-57 (67)
190 3qou_A Protein YBBN; thioredox 85.2 2.7 9.2E-05 39.2 8.5 96 140-243 118-213 (287)
191 3qwp_A SET and MYND domain-con 83.9 3 0.0001 41.9 8.7 71 137-207 327-402 (429)
192 3by6_A Predicted transcription 83.8 2.2 7.6E-05 35.2 6.4 64 331-396 13-77 (126)
193 2b0l_A GTP-sensing transcripti 83.5 1.7 5.6E-05 34.7 5.3 57 339-396 30-87 (102)
194 4g1t_A Interferon-induced prot 82.8 2.1 7.1E-05 42.2 6.9 103 141-243 336-458 (472)
195 2ond_A Cleavage stimulation fa 82.5 3.5 0.00012 38.6 8.1 102 141-246 170-272 (308)
196 3neu_A LIN1836 protein; struct 82.4 2.9 9.8E-05 34.5 6.5 64 331-396 15-79 (125)
197 2e2e_A Formate-dependent nitri 82.1 5.1 0.00017 33.5 8.3 64 140-206 79-145 (177)
198 1sfx_A Conserved hypothetical 82.1 9 0.00031 29.4 9.2 64 350-415 32-97 (109)
199 2h6f_A Protein farnesyltransfe 81.4 6.1 0.00021 38.9 9.7 98 138-243 96-194 (382)
200 2r5s_A Uncharacterized protein 81.1 3.3 0.00011 35.1 6.7 62 140-202 109-170 (176)
201 2htj_A P fimbrial regulatory p 80.9 3 0.0001 31.3 5.7 40 345-384 7-46 (81)
202 2r5s_A Uncharacterized protein 80.6 7.5 0.00026 32.7 8.9 98 139-244 40-137 (176)
203 1xi4_A Clathrin heavy chain; a 80.2 97 0.0033 36.2 23.9 54 141-205 1197-1250(1630)
204 4ham_A LMO2241 protein; struct 80.0 3.5 0.00012 34.3 6.3 66 331-398 16-82 (134)
205 1v4r_A Transcriptional repress 79.6 0.97 3.3E-05 35.7 2.5 65 331-397 13-78 (102)
206 2hr2_A Hypothetical protein; a 79.4 8.7 0.0003 33.2 8.8 62 141-205 59-131 (159)
207 2c2l_A CHIP, carboxy terminus 78.8 5.7 0.00019 36.8 8.1 63 140-205 39-101 (281)
208 2ek5_A Predicted transcription 78.8 4.1 0.00014 33.8 6.3 64 331-396 6-70 (129)
209 3rjv_A Putative SEL1 repeat pr 78.6 7.6 0.00026 34.1 8.6 94 140-243 51-157 (212)
210 1ub9_A Hypothetical protein PH 78.0 8.7 0.0003 29.3 7.8 50 338-388 17-66 (100)
211 3qou_A Protein YBBN; thioredox 77.6 5.6 0.00019 36.9 7.7 96 140-244 152-248 (287)
212 3mv2_B Coatomer subunit epsilo 76.5 50 0.0017 31.6 14.1 122 111-240 105-236 (310)
213 1oyi_A Double-stranded RNA-bin 76.3 4.9 0.00017 30.8 5.5 45 338-384 18-62 (82)
214 2ooe_A Cleavage stimulation fa 75.6 14 0.00047 37.3 10.6 99 140-245 322-421 (530)
215 3c7j_A Transcriptional regulat 74.0 5.4 0.00018 36.6 6.3 65 329-395 26-90 (237)
216 2xm6_A Protein corresponding t 73.7 18 0.00062 36.0 10.8 27 141-167 77-107 (490)
217 2p5v_A Transcriptional regulat 73.5 8.4 0.00029 32.8 7.1 48 342-389 14-64 (162)
218 3cuo_A Uncharacterized HTH-typ 73.2 22 0.00075 26.9 8.9 52 337-389 24-75 (99)
219 2xm6_A Protein corresponding t 73.2 19 0.00064 35.9 10.8 90 140-241 40-141 (490)
220 1pc2_A Mitochondria fission pr 73.2 34 0.0012 29.1 10.8 29 139-167 71-99 (152)
221 2v79_A DNA replication protein 72.5 11 0.00038 31.4 7.4 57 350-409 49-107 (135)
222 3r0a_A Putative transcriptiona 72.2 23 0.00078 28.7 9.2 68 353-420 43-112 (123)
223 1xmk_A Double-stranded RNA-spe 72.1 5.1 0.00017 30.4 4.6 47 337-384 11-58 (79)
224 2dbb_A Putative HTH-type trans 71.7 5.7 0.00019 33.4 5.5 48 342-389 13-63 (151)
225 1b89_A Protein (clathrin heavy 71.5 7.4 0.00025 39.4 7.1 86 141-243 150-235 (449)
226 2d1h_A ST1889, 109AA long hypo 71.5 25 0.00085 26.8 9.0 50 341-390 25-74 (109)
227 2l6j_A TPR repeat-containing p 71.4 9.1 0.00031 28.7 6.3 33 140-172 39-71 (111)
228 3t5v_A Nuclear mRNA export pro 70.4 5 0.00017 38.8 5.3 64 305-373 177-246 (316)
229 2cfx_A HTH-type transcriptiona 70.4 6.6 0.00023 32.8 5.6 48 342-389 9-59 (144)
230 2ia0_A Putative HTH-type trans 70.4 12 0.00043 32.3 7.5 47 343-389 22-71 (171)
231 2cg4_A Regulatory protein ASNC 70.0 6.5 0.00022 33.1 5.5 47 343-389 13-62 (152)
232 3i4p_A Transcriptional regulat 69.8 16 0.00055 31.1 8.1 49 341-389 6-57 (162)
233 1q1h_A TFE, transcription fact 69.6 2.9 9.9E-05 33.2 3.0 60 326-385 7-66 (110)
234 2ooe_A Cleavage stimulation fa 69.4 95 0.0032 30.9 18.3 99 140-245 273-386 (530)
235 2kko_A Possible transcriptiona 69.0 17 0.00058 28.6 7.5 52 336-389 24-75 (108)
236 1klx_A Cysteine rich protein B 68.8 16 0.00056 29.7 7.7 60 140-204 58-125 (138)
237 3ffl_A Anaphase-promoting comp 68.4 19 0.00066 31.3 8.1 30 140-169 64-93 (167)
238 4a0z_A Transcription factor FA 68.2 4.5 0.00016 36.0 4.2 45 335-379 9-53 (190)
239 3jth_A Transcription activator 67.9 17 0.00056 27.9 7.1 55 334-390 20-74 (98)
240 2oo2_A Hypothetical protein AF 67.9 11 0.00039 29.0 5.8 50 115-164 11-60 (86)
241 2cru_A Programmed cell death p 67.8 2.8 9.6E-05 34.4 2.5 54 334-387 34-87 (118)
242 1nzn_A CGI-135 protein, fissio 67.3 11 0.00038 31.2 6.1 40 136-175 71-110 (126)
243 2kat_A Uncharacterized protein 66.9 22 0.00074 27.2 7.7 80 156-243 2-81 (115)
244 1tbx_A ORF F-93, hypothetical 66.5 34 0.0011 26.0 8.7 51 346-396 16-70 (99)
245 1z7u_A Hypothetical protein EF 66.2 46 0.0016 26.1 9.7 46 351-396 34-80 (112)
246 3bee_A Putative YFRE protein; 65.8 8.7 0.0003 29.5 5.0 31 140-170 44-74 (93)
247 3ax2_A Mitochondrial import re 65.7 22 0.00076 26.4 6.9 37 143-179 21-57 (73)
248 1y0u_A Arsenical resistance op 65.5 13 0.00043 28.6 5.9 50 333-385 27-76 (96)
249 3ic7_A Putative transcriptiona 65.1 3.3 0.00011 34.1 2.5 64 331-396 13-77 (126)
250 1na3_A Designed protein CTPR2; 65.1 21 0.00072 25.4 7.0 31 140-170 44-74 (91)
251 1r1u_A CZRA, repressor protein 64.3 27 0.00093 27.2 7.8 51 336-388 25-75 (106)
252 1klx_A Cysteine rich protein B 64.1 32 0.0011 27.8 8.6 87 145-243 31-125 (138)
253 1pc2_A Mitochondria fission pr 63.2 43 0.0015 28.5 9.3 90 102-205 8-100 (152)
254 3edp_A LIN2111 protein; APC883 63.0 13 0.00045 33.9 6.5 66 331-398 11-77 (236)
255 2fh0_A Hypothetical 16.0 kDa p 62.7 1.7 5.7E-05 33.3 0.2 49 339-387 7-55 (81)
256 3dv8_A Transcriptional regulat 62.7 15 0.00052 32.0 6.7 44 351-398 168-211 (220)
257 2p5k_A Arginine repressor; DNA 62.4 18 0.0006 25.2 5.8 51 338-393 5-60 (64)
258 2w25_A Probable transcriptiona 62.4 11 0.00039 31.4 5.5 47 343-389 12-61 (150)
259 3u64_A Protein TP_0956; tetrat 62.3 23 0.00077 33.9 8.0 80 141-222 201-288 (301)
260 3ma5_A Tetratricopeptide repea 62.2 13 0.00045 28.1 5.5 30 140-169 42-71 (100)
261 2kc7_A BFR218_protein; tetratr 61.9 21 0.00072 26.2 6.5 32 141-172 37-68 (99)
262 3sxy_A Transcriptional regulat 61.8 13 0.00044 33.2 6.1 64 331-396 14-77 (218)
263 2e1c_A Putative HTH-type trans 61.6 8.9 0.0003 33.3 4.8 48 342-389 31-81 (171)
264 2l0k_A Stage III sporulation p 61.6 6.2 0.00021 30.9 3.3 35 339-374 8-42 (93)
265 3lwf_A LIN1550 protein, putati 61.5 21 0.00071 30.6 7.1 48 351-398 43-90 (159)
266 1i1g_A Transcriptional regulat 61.4 9 0.00031 31.6 4.6 41 343-383 9-49 (141)
267 2oqg_A Possible transcriptiona 61.3 55 0.0019 25.3 11.0 49 338-388 22-70 (114)
268 3mkq_A Coatomer beta'-subunit; 61.1 33 0.0011 36.1 10.1 82 140-242 682-763 (814)
269 3ihu_A Transcriptional regulat 60.8 15 0.00051 32.9 6.4 65 330-396 17-81 (222)
270 2cyy_A Putative HTH-type trans 60.4 9.5 0.00032 32.0 4.6 47 343-389 12-61 (151)
271 2hzt_A Putative HTH-type trans 60.4 38 0.0013 26.4 8.0 43 350-392 25-68 (107)
272 2wv0_A YVOA, HTH-type transcri 60.3 16 0.00054 33.5 6.5 65 331-397 12-77 (243)
273 2hs5_A Putative transcriptiona 60.0 17 0.00059 33.0 6.7 64 331-396 30-93 (239)
274 4ev0_A Transcription regulator 59.9 42 0.0014 28.9 9.1 45 350-398 161-205 (216)
275 3f8m_A GNTR-family protein tra 59.8 22 0.00074 32.7 7.4 63 331-398 16-79 (248)
276 1hw1_A FADR, fatty acid metabo 59.7 17 0.00057 32.8 6.5 64 331-396 9-73 (239)
277 3t8r_A Staphylococcus aureus C 59.0 17 0.00057 30.5 5.9 48 351-398 27-74 (143)
278 2fbi_A Probable transcriptiona 58.9 48 0.0016 26.5 8.7 44 350-393 48-91 (142)
279 3dkw_A DNR protein; CRP-FNR, H 58.8 57 0.0019 28.3 9.9 44 351-398 177-220 (227)
280 1ft9_A Carbon monoxide oxidati 58.4 26 0.00089 30.7 7.5 32 352-383 163-194 (222)
281 1sfu_A 34L protein; protein/Z- 57.6 22 0.00075 26.6 5.6 42 343-384 20-61 (75)
282 3eet_A Putative GNTR-family tr 57.6 18 0.00062 33.8 6.5 65 331-397 31-96 (272)
283 3pqk_A Biofilm growth-associat 57.3 39 0.0013 25.9 7.6 62 333-396 19-80 (102)
284 2nnn_A Probable transcriptiona 57.3 56 0.0019 26.0 8.9 44 350-393 50-93 (140)
285 2pmr_A Uncharacterized protein 57.1 41 0.0014 25.9 7.2 28 138-165 38-65 (87)
286 3bwg_A Uncharacterized HTH-typ 57.0 21 0.00072 32.5 6.7 63 332-396 8-71 (239)
287 3bpv_A Transcriptional regulat 56.7 53 0.0018 26.1 8.6 46 350-395 41-86 (138)
288 2pjp_A Selenocysteine-specific 56.3 15 0.00053 29.7 5.1 46 337-384 7-52 (121)
289 3f6o_A Probable transcriptiona 56.2 62 0.0021 25.6 8.8 56 331-388 12-67 (118)
290 2pn6_A ST1022, 150AA long hypo 55.6 16 0.00055 30.4 5.3 47 343-389 8-57 (150)
291 2fbh_A Transcriptional regulat 55.6 78 0.0027 25.3 9.8 49 348-396 48-99 (146)
292 3e97_A Transcriptional regulat 55.4 35 0.0012 30.0 7.9 43 351-397 174-216 (231)
293 1eij_A Hypothetical protein MT 55.3 2 6.8E-05 32.8 -0.5 46 339-387 9-57 (80)
294 1u2w_A CADC repressor, cadmium 55.2 55 0.0019 26.2 8.4 54 333-387 38-91 (122)
295 3tgn_A ADC operon repressor AD 55.0 41 0.0014 27.1 7.7 45 346-391 46-90 (146)
296 3ryp_A Catabolite gene activat 54.6 36 0.0012 29.3 7.7 32 352-383 167-198 (210)
297 2gxg_A 146AA long hypothetical 54.5 51 0.0017 26.5 8.2 45 346-391 45-89 (146)
298 2qvo_A Uncharacterized protein 53.9 26 0.00089 26.7 5.9 44 353-396 31-74 (95)
299 1b89_A Protein (clathrin heavy 53.7 11 0.00038 38.1 4.5 81 141-242 124-204 (449)
300 1om2_A Protein (mitochondrial 53.2 19 0.00065 28.2 4.8 37 143-179 24-60 (95)
301 3oop_A LIN2960 protein; protei 53.0 55 0.0019 26.3 8.2 47 350-396 49-98 (143)
302 1j5y_A Transcriptional regulat 52.8 17 0.00057 31.8 5.1 48 336-383 19-68 (187)
303 1r1t_A Transcriptional repress 52.7 73 0.0025 25.6 8.7 50 336-387 45-94 (122)
304 3ffl_A Anaphase-promoting comp 52.4 31 0.001 30.0 6.5 67 177-243 21-91 (167)
305 3k0l_A Repressor protein; heli 52.3 61 0.0021 26.8 8.5 42 350-391 58-99 (162)
306 3bja_A Transcriptional regulat 52.3 55 0.0019 26.0 8.0 42 350-391 45-86 (139)
307 3eco_A MEPR; mutlidrug efflux 52.2 65 0.0022 25.7 8.5 41 351-391 46-86 (139)
308 3bj6_A Transcriptional regulat 52.0 73 0.0025 25.8 8.9 43 349-391 51-93 (152)
309 3o48_A Mitochondria fission 1 51.9 22 0.00074 29.8 5.3 41 136-176 75-115 (134)
310 2a61_A Transcriptional regulat 51.8 78 0.0027 25.3 9.0 44 350-393 45-88 (145)
311 2frh_A SARA, staphylococcal ac 51.7 58 0.002 26.0 8.0 60 351-412 52-114 (127)
312 2rdp_A Putative transcriptiona 51.3 61 0.0021 26.2 8.3 43 350-392 54-96 (150)
313 3e4b_A ALGK; tetratricopeptide 50.8 44 0.0015 33.1 8.5 91 141-242 178-278 (452)
314 1jgs_A Multiple antibiotic res 50.2 48 0.0016 26.4 7.3 43 350-392 46-88 (138)
315 2fmy_A COOA, carbon monoxide o 49.6 43 0.0015 29.1 7.4 43 351-397 166-209 (220)
316 3ghg_A Fibrinogen alpha chain; 49.6 31 0.0011 35.2 6.8 101 105-207 52-155 (562)
317 1zu2_A Mitochondrial import re 49.5 40 0.0014 28.9 6.8 63 140-205 37-120 (158)
318 3mkq_B Coatomer subunit alpha; 49.2 94 0.0032 27.1 9.3 81 141-242 36-116 (177)
319 2y75_A HTH-type transcriptiona 49.2 54 0.0018 26.4 7.4 48 351-398 25-72 (129)
320 3s2w_A Transcriptional regulat 49.1 57 0.002 26.9 7.8 42 350-391 62-103 (159)
321 3bdd_A Regulatory protein MARR 48.8 30 0.001 27.8 5.8 42 350-391 43-84 (142)
322 1lj9_A Transcriptional regulat 48.6 49 0.0017 26.6 7.2 42 350-391 41-82 (144)
323 1tc3_C Protein (TC3 transposas 48.3 16 0.00054 23.4 3.3 26 351-376 20-45 (51)
324 1deq_A Fibrinogen (alpha chain 48.1 1.3E+02 0.0044 29.5 10.6 101 105-207 55-158 (390)
325 2di3_A Bacterial regulatory pr 48.0 31 0.0011 31.1 6.3 68 331-398 6-76 (239)
326 3t5x_A PCI domain-containing p 47.9 39 0.0013 30.1 6.8 58 136-193 11-70 (203)
327 1y8m_A FIS1; mitochondria, unk 47.8 27 0.00092 29.6 5.3 39 137-175 75-113 (144)
328 1ylf_A RRF2 family protein; st 47.8 52 0.0018 27.4 7.3 48 350-398 28-75 (149)
329 2nyx_A Probable transcriptiona 47.7 87 0.003 26.1 8.9 42 350-391 57-98 (168)
330 2vkj_A TM1634; membrane protei 47.6 96 0.0033 24.0 10.1 51 134-184 48-100 (106)
331 3kcc_A Catabolite gene activat 47.4 47 0.0016 30.0 7.5 32 352-383 217-248 (260)
332 3e4b_A ALGK; tetratricopeptide 47.4 74 0.0025 31.4 9.6 57 143-203 217-278 (452)
333 2eth_A Transcriptional regulat 47.3 88 0.003 25.5 8.7 42 350-391 56-97 (154)
334 3bro_A Transcriptional regulat 46.7 73 0.0025 25.3 7.9 40 352-391 50-89 (141)
335 3cjn_A Transcriptional regulat 46.4 87 0.003 25.7 8.6 42 350-391 64-105 (162)
336 2v5f_A Prolyl 4-hydroxylase su 46.3 52 0.0018 25.1 6.6 68 176-243 5-74 (104)
337 3ulw_A 30S ribosomal protein S 46.0 38 0.0013 26.4 5.5 55 37-94 35-89 (93)
338 3iwz_A CAP-like, catabolite ac 45.9 62 0.0021 28.1 7.9 41 352-396 187-227 (230)
339 1uly_A Hypothetical protein PH 45.8 1.1E+02 0.0038 26.7 9.4 52 332-385 15-66 (192)
340 1s3j_A YUSO protein; structura 45.8 93 0.0032 25.2 8.6 42 350-391 49-90 (155)
341 2hr3_A Probable transcriptiona 45.7 97 0.0033 24.8 8.6 42 350-391 48-89 (147)
342 3d0s_A Transcriptional regulat 45.6 44 0.0015 29.2 6.8 43 351-397 176-218 (227)
343 3nrv_A Putative transcriptiona 45.5 40 0.0014 27.3 6.2 42 350-391 52-93 (148)
344 3la7_A Global nitrogen regulat 45.5 66 0.0023 28.6 8.1 44 351-398 192-235 (243)
345 2fsw_A PG_0823 protein; alpha- 45.4 79 0.0027 24.4 7.6 47 350-396 36-83 (107)
346 3bee_A Putative YFRE protein; 45.4 96 0.0033 23.4 8.2 62 141-205 8-72 (93)
347 3hsr_A HTH-type transcriptiona 45.4 75 0.0026 25.5 7.8 47 345-391 43-89 (140)
348 2pg4_A Uncharacterized protein 45.3 55 0.0019 24.7 6.5 32 352-383 30-62 (95)
349 3g3z_A NMB1585, transcriptiona 45.2 88 0.003 25.1 8.3 47 350-396 43-92 (145)
350 2gau_A Transcriptional regulat 45.1 83 0.0028 27.4 8.7 44 351-398 179-222 (232)
351 2oz6_A Virulence factor regula 45.0 52 0.0018 28.1 7.1 32 352-383 164-195 (207)
352 3ech_A MEXR, multidrug resista 44.9 46 0.0016 26.9 6.4 42 350-391 49-90 (142)
353 2fu4_A Ferric uptake regulatio 44.8 51 0.0017 24.1 6.1 44 341-384 20-70 (83)
354 4g26_A Pentatricopeptide repea 44.7 72 0.0025 32.3 9.1 62 141-204 142-203 (501)
355 2vxz_A Pyrsv_GP04; viral prote 44.4 33 0.0011 29.2 5.2 44 339-383 12-55 (165)
356 3f6v_A Possible transcriptiona 43.9 59 0.002 27.3 7.0 57 332-390 53-109 (151)
357 2bv6_A MGRA, HTH-type transcri 43.8 47 0.0016 26.7 6.3 43 349-391 48-90 (142)
358 2hvu_A PDCD5-like protein; YMR 43.7 5.2 0.00018 32.7 0.2 49 339-387 42-90 (116)
359 1on2_A Transcriptional regulat 43.6 93 0.0032 25.1 8.1 45 349-396 19-63 (142)
360 3cdh_A Transcriptional regulat 43.2 95 0.0032 25.2 8.2 46 346-391 51-96 (155)
361 2jxn_A Uncharacterized protein 43.0 5.8 0.0002 33.0 0.4 49 339-387 42-90 (127)
362 2lkp_A Transcriptional regulat 42.8 1.2E+02 0.004 23.7 8.4 47 339-387 34-80 (119)
363 2h09_A Transcriptional regulat 41.9 1.2E+02 0.004 24.9 8.6 35 351-385 53-87 (155)
364 3iuo_A ATP-dependent DNA helic 41.5 24 0.00084 28.7 4.0 33 351-383 31-64 (122)
365 2xvc_A ESCRT-III, SSO0910; cel 41.3 31 0.001 24.4 3.8 32 351-382 24-55 (59)
366 1xd7_A YWNA; structural genomi 41.3 36 0.0012 28.4 5.1 44 354-398 25-68 (145)
367 1bia_A BIRA bifunctional prote 40.9 32 0.0011 32.9 5.4 45 339-383 6-50 (321)
368 1ku9_A Hypothetical protein MJ 40.6 1.4E+02 0.0047 23.8 10.6 41 351-391 40-80 (152)
369 2qww_A Transcriptional regulat 40.6 36 0.0012 27.9 5.1 47 350-396 53-104 (154)
370 2pex_A Transcriptional regulat 40.3 36 0.0012 27.9 5.1 42 350-391 59-100 (153)
371 2fa5_A Transcriptional regulat 40.2 83 0.0028 25.8 7.4 42 350-391 61-102 (162)
372 4hbl_A Transcriptional regulat 39.4 54 0.0018 26.8 6.0 47 350-396 53-102 (149)
373 3e6c_C CPRK, cyclic nucleotide 39.4 47 0.0016 29.6 6.1 42 351-396 176-217 (250)
374 3e6m_A MARR family transcripti 39.4 75 0.0026 26.2 7.0 47 350-396 65-114 (161)
375 3k69_A Putative transcription 38.9 62 0.0021 27.6 6.4 61 337-398 14-74 (162)
376 3eqx_A FIC domain containing t 38.9 35 0.0012 33.5 5.3 53 343-396 302-354 (373)
377 3k2z_A LEXA repressor; winged 38.3 30 0.001 30.3 4.4 33 352-384 24-56 (196)
378 2x4h_A Hypothetical protein SS 38.3 47 0.0016 26.8 5.4 40 345-384 24-63 (139)
379 4e6h_A MRNA 3'-END-processing 38.3 1.6E+02 0.0055 31.2 10.8 103 141-247 380-502 (679)
380 1nzn_A CGI-135 protein, fissio 38.1 1.6E+02 0.0056 24.0 8.8 65 171-239 34-98 (126)
381 3deu_A Transcriptional regulat 37.8 1.4E+02 0.0048 24.8 8.6 47 350-396 66-115 (166)
382 3ly7_A Transcriptional activat 37.7 1.7E+02 0.0057 28.7 10.0 61 141-205 279-339 (372)
383 2qc0_A Uncharacterized protein 37.7 37 0.0013 33.2 5.3 34 351-384 310-343 (373)
384 1z91_A Organic hydroperoxide r 37.3 37 0.0012 27.5 4.6 42 350-391 52-93 (147)
385 1stz_A Heat-inducible transcri 37.2 34 0.0012 33.1 4.9 38 346-383 30-69 (338)
386 3b73_A PHIH1 repressor-like pr 37.0 32 0.0011 27.6 3.9 45 341-385 16-62 (111)
387 2jn6_A Protein CGL2762, transp 37.0 45 0.0015 25.3 4.8 42 338-380 10-51 (97)
388 2qlz_A Transcription factor PF 36.7 1.4E+02 0.0049 27.0 8.8 38 346-383 172-209 (232)
389 3f3x_A Transcriptional regulat 36.3 1.5E+02 0.005 23.6 8.3 44 350-394 49-92 (144)
390 2jsc_A Transcriptional regulat 35.9 56 0.0019 26.0 5.3 53 334-388 18-70 (118)
391 1yyv_A Putative transcriptiona 35.9 1.7E+02 0.0059 23.6 11.5 47 350-396 46-93 (131)
392 3hug_A RNA polymerase sigma fa 35.7 55 0.0019 24.6 5.0 38 337-377 41-78 (92)
393 3kp7_A Transcriptional regulat 35.5 77 0.0026 25.7 6.4 43 349-391 48-92 (151)
394 1z6r_A MLC protein; transcript 35.1 48 0.0016 32.4 5.8 46 337-382 15-60 (406)
395 2f2e_A PA1607; transcription f 35.0 1.3E+02 0.0043 24.9 7.7 42 350-391 35-76 (146)
396 2kfs_A Conserved hypothetical 34.7 47 0.0016 28.2 4.7 39 351-396 30-69 (148)
397 3mn2_A Probable ARAC family tr 34.6 52 0.0018 25.4 4.9 26 350-375 16-41 (108)
398 1fse_A GERE; helix-turn-helix 34.1 62 0.0021 22.7 4.9 29 350-378 24-52 (74)
399 1r7j_A Conserved hypothetical 34.0 1.6E+02 0.0053 22.5 7.6 33 353-385 21-53 (95)
400 2bgc_A PRFA; bacterial infecti 33.7 87 0.003 27.6 6.9 43 352-398 169-212 (238)
401 2vn2_A DNAD, chromosome replic 33.6 32 0.0011 28.1 3.5 36 353-388 52-87 (128)
402 4b4t_P 26S proteasome regulato 33.4 3.5E+02 0.012 26.7 12.0 106 136-242 53-164 (445)
403 4h7y_A Dual specificity protei 33.4 69 0.0023 27.5 5.5 43 140-182 95-137 (161)
404 4e6h_A MRNA 3'-END-processing 32.7 85 0.0029 33.3 7.5 63 141-206 471-534 (679)
405 3fx3_A Cyclic nucleotide-bindi 32.4 73 0.0025 27.9 6.1 42 352-398 178-219 (237)
406 2k9l_A RNA polymerase sigma fa 32.3 38 0.0013 25.1 3.4 26 350-375 46-71 (76)
407 2elh_A CG11849-PA, LD40883P; s 32.2 61 0.0021 24.2 4.7 27 351-377 37-63 (87)
408 3dn7_A Cyclic nucleotide bindi 31.6 22 0.00075 30.4 2.3 29 350-378 166-194 (194)
409 4fhn_B Nucleoporin NUP120; pro 31.4 69 0.0024 36.2 6.9 100 142-241 845-964 (1139)
410 3lsg_A Two-component response 31.0 87 0.003 23.8 5.6 24 352-375 19-42 (103)
411 1z05_A Transcriptional regulat 30.8 52 0.0018 32.5 5.2 47 336-382 37-83 (429)
412 4g26_A Pentatricopeptide repea 30.7 4.2E+02 0.014 26.5 17.7 94 141-242 107-202 (501)
413 2lnb_A Z-DNA-binding protein 1 30.5 1E+02 0.0035 23.2 5.3 47 336-382 18-64 (80)
414 3nqo_A MARR-family transcripti 30.4 2.5E+02 0.0086 23.8 12.2 43 349-391 54-96 (189)
415 2hoe_A N-acetylglucosamine kin 30.0 17 0.00059 35.5 1.4 42 340-382 22-63 (380)
416 3oou_A LIN2118 protein; protei 29.8 80 0.0027 24.3 5.2 26 350-375 19-44 (108)
417 2w48_A Sorbitol operon regulat 29.7 73 0.0025 30.1 5.9 39 350-388 19-57 (315)
418 1pdn_C Protein (PRD paired); p 29.7 76 0.0026 24.7 5.2 43 338-383 22-64 (128)
419 3u2r_A Regulatory protein MARR 29.4 1.7E+02 0.0058 24.1 7.7 42 351-392 61-102 (168)
420 2gqq_A Leucine-responsive regu 28.8 11 0.00037 32.2 -0.2 49 335-384 11-59 (163)
421 2yru_A Steroid receptor RNA ac 28.7 1.2E+02 0.0042 24.5 6.2 48 114-165 40-87 (118)
422 2p7v_B Sigma-70, RNA polymeras 28.6 99 0.0034 21.6 5.1 30 350-379 23-52 (68)
423 2vqe_O 30S ribosomal protein S 28.5 23 0.00078 27.4 1.6 24 70-94 63-86 (89)
424 2k9s_A Arabinose operon regula 28.3 69 0.0024 24.6 4.6 25 351-375 19-43 (107)
425 2crb_A Nuclear receptor bindin 28.0 2.1E+02 0.0072 22.2 6.9 28 142-169 18-45 (97)
426 3kz3_A Repressor protein CI; f 27.9 21 0.00072 26.1 1.3 27 351-377 53-79 (80)
427 4b8x_A SCO5413, possible MARR- 27.7 74 0.0025 26.1 4.9 45 348-392 47-91 (147)
428 3boq_A Transcriptional regulat 27.6 1.2E+02 0.0041 24.7 6.3 43 349-391 59-101 (160)
429 3i71_A Ethanolamine utilizatio 27.3 90 0.0031 22.0 4.3 34 351-384 17-50 (68)
430 1zu2_A Mitochondrial import re 27.2 1E+02 0.0034 26.3 5.7 36 136-171 77-123 (158)
431 4a5u_B 30S ribosomal protein S 27.0 43 0.0015 25.8 2.9 55 37-94 31-85 (88)
432 2rpa_A Katanin P60 ATPase-cont 26.9 74 0.0025 23.9 4.2 26 142-167 15-40 (78)
433 1m1j_A Fibrinogen alpha subuni 26.9 3.6E+02 0.012 27.0 10.1 101 105-207 53-156 (491)
434 2ra5_A Putative transcriptiona 26.9 16 0.00054 33.6 0.5 64 331-396 18-82 (247)
435 1ku3_A Sigma factor SIGA; heli 26.1 1.1E+02 0.0037 21.7 5.0 28 351-378 29-56 (73)
436 3c57_A Two component transcrip 26.1 85 0.0029 23.8 4.6 33 350-382 40-72 (95)
437 1je8_A Nitrate/nitrite respons 26.0 1E+02 0.0034 22.7 4.9 30 350-379 34-63 (82)
438 3mkq_A Coatomer beta'-subunit; 25.8 5.1E+02 0.018 26.7 12.3 76 143-242 633-708 (814)
439 1x3u_A Transcriptional regulat 25.8 1.1E+02 0.0037 21.8 5.0 30 350-379 29-58 (79)
440 2xzm_8 RPS25E,; ribosome, tran 25.3 1.2E+02 0.0041 25.4 5.5 51 348-398 58-109 (143)
441 2glo_A Brinker CG9653-PA; prot 25.2 84 0.0029 21.4 4.1 21 355-375 28-48 (59)
442 2o8x_A Probable RNA polymerase 25.2 1.2E+02 0.004 20.9 5.0 28 350-377 29-56 (70)
443 1k78_A Paired box protein PAX5 25.1 98 0.0033 25.3 5.2 43 337-382 36-78 (149)
444 1a32_A Ribosomal protein S15; 25.0 29 0.00098 26.8 1.6 23 71-94 63-85 (88)
445 2rn7_A IS629 ORFA; helix, all 24.7 79 0.0027 24.4 4.3 43 339-381 12-59 (108)
446 3oio_A Transcriptional regulat 24.7 69 0.0024 24.9 4.0 26 350-375 21-46 (113)
447 2ao9_A Phage protein; structur 24.6 1.2E+02 0.0042 25.8 5.7 43 332-374 26-70 (155)
448 2wte_A CSA3; antiviral protein 24.5 1.3E+02 0.0044 27.4 6.3 45 350-396 164-208 (244)
449 2da7_A Zinc finger homeobox pr 24.5 57 0.002 24.0 3.0 31 351-382 31-61 (71)
450 1tty_A Sigma-A, RNA polymerase 24.0 97 0.0033 23.0 4.6 28 351-378 37-64 (87)
451 3fm5_A Transcriptional regulat 23.8 1.8E+02 0.0062 23.3 6.7 41 351-391 53-93 (150)
452 3jw4_A Transcriptional regulat 23.8 68 0.0023 26.0 3.9 42 351-392 56-97 (148)
453 2fq3_A Transcription regulator 23.8 1.2E+02 0.0041 24.0 5.1 71 318-388 29-103 (104)
454 4aik_A Transcriptional regulat 23.6 3E+02 0.01 22.4 9.7 59 351-411 45-106 (151)
455 1bl0_A Protein (multiple antib 23.6 90 0.0031 25.0 4.6 26 350-375 25-50 (129)
456 2jpc_A SSRB; DNA binding prote 23.6 1E+02 0.0034 20.8 4.2 29 350-378 11-39 (61)
457 3mkl_A HTH-type transcriptiona 23.5 97 0.0033 24.4 4.7 26 350-375 21-46 (120)
458 2fxa_A Protease production reg 23.4 1.3E+02 0.0044 26.3 5.9 42 350-391 60-101 (207)
459 1ucr_A Protein DSVD; dissimila 23.2 85 0.0029 23.5 3.8 33 351-383 20-53 (78)
460 1o5l_A Transcriptional regulat 22.7 35 0.0012 29.7 2.0 43 351-397 163-205 (213)
461 3hrs_A Metalloregulator SCAR; 22.7 2.9E+02 0.01 24.2 8.3 53 341-396 9-61 (214)
462 3u5c_Z RP45, S31, YS23, 40S ri 22.6 1.1E+02 0.0038 24.4 4.6 50 348-397 55-104 (108)
463 2pi2_A Replication protein A 3 22.5 18 0.00062 33.8 0.0 38 351-388 223-261 (270)
464 1e0g_A Membrane-bound lytic mu 22.5 56 0.0019 21.0 2.5 18 354-371 12-29 (48)
465 2rnj_A Response regulator prot 21.4 94 0.0032 23.2 4.0 30 350-379 42-71 (91)
466 1mkm_A ICLR transcriptional re 21.0 3.9E+02 0.013 23.8 8.9 79 343-427 13-92 (249)
467 3cuq_B Vacuolar protein-sortin 20.5 1E+02 0.0036 27.7 4.7 41 351-392 167-207 (218)
468 1nd9_A Translation initiation 20.4 66 0.0022 20.9 2.6 24 352-375 2-25 (49)
469 1nxh_A MTH396 protein; hypothe 20.4 33 0.0011 28.1 1.1 41 333-375 5-45 (126)
470 2jrt_A Uncharacterized protein 20.3 61 0.0021 25.2 2.7 31 351-381 48-78 (95)
471 3t5v_B Nuclear mRNA export pro 20.3 1.4E+02 0.0048 30.0 6.0 57 137-193 218-282 (455)
472 3r8n_O 30S ribosomal protein S 20.2 37 0.0013 26.2 1.3 23 71-94 63-85 (88)
473 4h7y_A Dual specificity protei 20.2 2.5E+02 0.0085 24.0 6.6 61 141-205 63-123 (161)
No 1
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-66 Score=532.26 Aligned_cols=373 Identities=19% Similarity=0.289 Sum_probs=310.8
Q ss_pred hHHHHHHHHhcCC-CchhHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------------CCCcCCHHHHHHHHH
Q 013559 49 KITRLMFIADHCD-IASMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLG--------------PNYAMDEAWCDSVDR 113 (441)
Q Consensus 49 ~i~rL~fi~~~~~-~~~~~~~a~~~~~~~lk~t~~~~~Y~~~~~~l~~~~~--------------~~~~~D~~~~~~~~~ 113 (441)
.+.++.|+..+.. .+..+.++++.+++.+|+++|+|+|+.+|+.+....+ ...++|++|++.++.
T Consensus 25 ~la~~~f~l~~~~~~~~~~~~~~~~l~~~ik~~~ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 104 (429)
T 4b4t_R 25 EVSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCK 104 (429)
T ss_dssp -----------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTTCCSSCTTTTC
T ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 3567788776542 2567889999999999999999999999998763211 024789999999999
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhHHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCH
Q 013559 114 RAEQRKEKLENELNAYRT-NLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQF 192 (441)
Q Consensus 114 ~~~~~~~~Le~el~~~~~-n~~~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~ 192 (441)
.|..++++|++.++.+++ +.++.++|+++.+||+||+++||+++|.++|.+++++|++++|+++++|+++|++++.+||
T Consensus 105 ~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~ 184 (429)
T 4b4t_R 105 KNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQ 184 (429)
T ss_dssp CSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH
Confidence 999999999999999866 6777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhcccc-cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCcCCCCCchhhhcHHHHHHHHHHHHHhcCC
Q 013559 193 THVTSYVSKAEQTPE-ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFD 271 (441)
Q Consensus 193 ~~~~~~~~ka~~~~~-~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~~~~~~el~s~~d~~~Y~~l~al~s~~ 271 (441)
.++..+++|++..++ ++||.+++++++|.|+++++.|+|.+|+++|++++.+++ +.+.+++.++++|++||++++++
T Consensus 185 ~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~--~~e~~~~~~~~~y~~l~al~~~~ 262 (429)
T 4b4t_R 185 LYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT--SIELTSYESIATYASVTGLFTLE 262 (429)
T ss_dssp HHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC--CSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC--ccchhhHHHHHHHHHHHHHhcCC
Confidence 999999999999887 789999999999999999999999999999999999886 67899999999999999999999
Q ss_pred hHHHHHhcccCHhhHhhhccchHH---HHHHHHHhcCCHHHHHHHH-HHhHHhhhhchhHHHHHHHHHHHHHHHHHHHhc
Q 013559 272 RAELKSKVIDNVNFRNFLELVPEV---RELINDFYSSRYASCLDYL-GNLKANLLLDIHLHDHVETLYDQIRNKALIQYT 347 (441)
Q Consensus 272 R~eLk~~vl~~~~~~~~le~~p~~---~~ll~~f~~~~y~~~~~~L-~~~~~~l~~D~~L~~h~~~l~~~iR~~~i~qy~ 347 (441)
|++++.+|+++++++.+++.+|.+ .+++.+|++++|..|++.+ ......+..|+|+++|++.|+++||.+++.||+
T Consensus 263 r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~ 342 (429)
T 4b4t_R 263 RTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLL 342 (429)
T ss_dssp HHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988865 5679999999999998865 556778999999999999999999999999999
Q ss_pred cccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecCCchhHHHHHHHHHHhhHHHHHHHHH
Q 013559 348 HPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAML 423 (441)
Q Consensus 348 ~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~d~r~~~~~~~i~~~~~~~~~~~~l~ 423 (441)
+||++|+|++||++||+|++++|++|++||.+|+|+||||+++|+|++++||+++++|+++|++||.+.++++.+-
T Consensus 343 ~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~ 418 (429)
T 4b4t_R 343 ESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYG 418 (429)
T ss_dssp HTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC--------------------------
T ss_pred HHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988763
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=5.6e-43 Score=354.68 Aligned_cols=280 Identities=16% Similarity=0.254 Sum_probs=230.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhhhcC---chhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccccc--CChhhhhhH
Q 013559 143 NDFGDFYYAHGALGDAFKSYVRTRDYCTT---SKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEA--LEPVTIAKL 217 (441)
Q Consensus 143 ~~la~~~~~~Gd~~~A~~~~~~~r~~~~~---~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~--~d~~~~~~l 217 (441)
.+||++|++.|+|++|++.+.+++..|.. ..+.+++++..++++...+|+.+++..+.+|+...++ +||.+++++
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 38899999999999999999999999975 7799999999999999999999999999999987763 899999999
Q ss_pred HHHHHHHhc-ccccHHHHHHHHHhcCcCCCCCchhhhcHHHHHHHHHHHHHhcCChHHHHHhcccCHhhHhhhccchH--
Q 013559 218 RCAAGLAHL-EARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPE-- 294 (441)
Q Consensus 218 ~~~~gl~~l-~~r~y~~Aa~~Fl~~~~t~~~~~~el~s~~d~~~Y~~l~al~s~~R~eLk~~vl~~~~~~~~le~~p~-- 294 (441)
++++|++++ .+|+|++|+++|++++.+|.. .+.....++++|++||+|++++|.+++. ++.++.+..+ ..|+
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~--~~~~~~~~~lkYlvL~aLl~~~r~el~~-~l~~~~~~~~--~~pei~ 257 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDS--VDSVKALTSLKYMLLCKIMLGQSDDVNQ-LVSGKLAITY--SGRDID 257 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCGGGHHH-HHHSHHHHTT--CSHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccc--cccHHHHHHHHHHHHHHHHcCCHHHHHH-Hhcccccccc--CCccHH
Confidence 999999999 999999999999999877642 2223457899999999999999999986 5566655555 4555
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHhHHhhhhchhHHHHHHHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHH
Q 013559 295 -VRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKEL 373 (441)
Q Consensus 295 -~~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L 373 (441)
+++++.+|.++++..|+..|..+++.+..|+|+++|++.++++||.+++.|+++||++|+|+.||+.||+|++++|++|
T Consensus 258 ~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L 337 (394)
T 3txn_A 258 AMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKL 337 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccceEecCCCCeEEEecCCchhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 013559 374 EALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRAN 427 (441)
Q Consensus 374 ~~LI~~g~L~akID~~~gvv~~~~~d~r~~~~~~~i~~~~~~~~~~~~l~lR~~ 427 (441)
++||.+|+|+|+||+++|+|+++++++++.+|+++++.+..+...+..++-+..
T Consensus 338 ~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~~ 391 (394)
T 3txn_A 338 SQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAK 391 (394)
T ss_dssp HHHHHTTSSCEEEETTTTEEEECCC-----------------------------
T ss_pred HHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887765
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.6e-29 Score=250.27 Aligned_cols=290 Identities=16% Similarity=0.220 Sum_probs=219.6
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc--cCChhh
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE--ALEPVT 213 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~--~~d~~~ 213 (441)
...+..+|..|.+.|+|.+|.+++.++...+. +....+++.+..++++...|||..+...+.++..... ..++..
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 34778999999999999999999999866553 4466789999999999999999999999999987543 356688
Q ss_pred hhhHHHHHHHHhcccccHHHHHHHHHhcCcCCCC--CchhhhcHHHHHHHHHHHHHhcCChHHHHHhcccCHhhHhh--h
Q 013559 214 IAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGN--SYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNF--L 289 (441)
Q Consensus 214 ~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~~~--~~~el~s~~d~~~Y~~l~al~s~~R~eLk~~vl~~~~~~~~--l 289 (441)
+..+..+.|.++...++|.+|..+|.+++.++.. .............|+++|.+.+..+.+... ++.+...... .
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 293 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKN-ILNAKYTKETYQS 293 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHCSSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHh-HHHHHHHHHHhcc
Confidence 8999999999999999999999999999875421 111222344567889999999887766544 3333333332 1
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHhHHhhhhchhHHHHHHHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHH
Q 013559 290 ELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGI 369 (441)
Q Consensus 290 e~~p~~~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~ 369 (441)
...|.+..++.+|.++++..+...+..+...+..|+++..|+..+.+.+|...+.++++||++|+|+.||+.||++++++
T Consensus 294 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~ 373 (434)
T 4b4t_Q 294 RGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQV 373 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHH
T ss_pred hhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHH
Confidence 23467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccceEecCCCCeEEEecCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013559 370 EKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLL 429 (441)
Q Consensus 370 E~~L~~LI~~g~L~akID~~~gvv~~~~~d~r~~~~~~~i~~~~~~~~~~~~l~lR~~~~ 429 (441)
|++|++||.+|+|+|+||+++|+|++.+++.+...|+++++..+.+.+.+..++.|+..|
T Consensus 374 E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~vd~L~~ka~~l 433 (434)
T 4b4t_Q 374 EGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKASVL 433 (434)
T ss_dssp HHHHHHHHHHTSSCCEEETTTTEEECC---------------------------------
T ss_pred HHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999888887654
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-30 Score=266.39 Aligned_cols=281 Identities=13% Similarity=0.086 Sum_probs=220.8
Q ss_pred HHHHHHHHHhhhhHHHHH--hHHhHHHHHHHHcCCHHHHHHHHHHH-Hhhhc--CchhHHHHHHHHHHHHHHhcCHHHHH
Q 013559 122 LENELNAYRTNLIKESIR--MGYNDFGDFYYAHGALGDAFKSYVRT-RDYCT--TSKHIIHMCMSAILVSIEMGQFTHVT 196 (441)
Q Consensus 122 Le~el~~~~~n~~~esir--~~~~~la~~~~~~Gd~~~A~~~~~~~-r~~~~--~~~~~~~~~l~~i~~~i~~~~~~~~~ 196 (441)
+...+...+++.+..++. +....||++|++.|++.+|++.+..+ ++.++ +...++++++.++|+++..+||..+.
T Consensus 118 ~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~ 197 (445)
T 4b4t_P 118 VIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQAT 197 (445)
T ss_dssp HHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 333344456666554433 35688999999999999999999998 45443 45778999999999999999999999
Q ss_pred hHHHHHhcc-cc-cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCcCCCCCchhhhcHHHHHHHHHHHHHhc---CC
Q 013559 197 SYVSKAEQT-PE-ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALAS---FD 271 (441)
Q Consensus 197 ~~~~ka~~~-~~-~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~~~~~~el~s~~d~~~Y~~l~al~s---~~ 271 (441)
..++|++.. .. .++|.++.+++.+.|.+++++|+|.+|+++|++++.++... .+-.....+..|+++|.+++ ..
T Consensus 198 ~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~-~d~~~~~~~L~~~v~~~iLa~~~~~ 276 (445)
T 4b4t_P 198 VLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK-SDEAKWKPVLSHIVYFLVLSPYGNL 276 (445)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHSSCSST
T ss_pred HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc-CCHHHHHHHHHHHHHHHHhCCCCch
Confidence 999999763 33 57899999999999999999999999999999998765310 01111223345566666664 45
Q ss_pred hHHHHHhcccCHhhHhhhccchHHHHHHHHHhcCCHHHHHHHHHHhHHhhhhchhH------HHHHHHHHHHHHHHHHHH
Q 013559 272 RAELKSKVIDNVNFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHL------HDHVETLYDQIRNKALIQ 345 (441)
Q Consensus 272 R~eLk~~vl~~~~~~~~le~~p~~~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L------~~h~~~l~~~iR~~~i~q 345 (441)
|+++..++..++ .++..|.++.++++|.+++...|...+..+.+.+..|+++ ..|...|.+.++...+..
T Consensus 277 ~~~ll~~~~~~~----~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~ 352 (445)
T 4b4t_P 277 QNDLIHKIQNDN----NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRV 352 (445)
T ss_dssp THHHHHSHHHHS----SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc----cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHH
Confidence 777766554332 2456789999999999999999999999999988888876 789999999999999999
Q ss_pred hccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecCCchhHHHHH
Q 013559 346 YTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQR 407 (441)
Q Consensus 346 y~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~d~r~~~~~~ 407 (441)
+.+||++|++++||+.||+|++++|++|++||.+|+|+||||+++|+|++.++.+.+..+.+
T Consensus 353 i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~ 414 (445)
T 4b4t_P 353 ISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNE 414 (445)
T ss_dssp HHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC------------
T ss_pred HHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988665554443
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-17 Score=170.24 Aligned_cols=252 Identities=11% Similarity=0.040 Sum_probs=187.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhc--------------CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cC--
Q 013559 147 DFYYAHGALGDAFKSYVRTRDYCT--------------TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-AL-- 209 (441)
Q Consensus 147 ~~~~~~Gd~~~A~~~~~~~r~~~~--------------~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~-- 209 (441)
.....+.|.++|.+.+..+..... .....+.+.+.+.+..+..+|...++..+++++..++ .+
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 445678899999999988744321 1134567778888999999999999999999999877 33
Q ss_pred ChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCcCCCCCchhhhcHH---HHHHHHHHHHHhc---CChHHHHHhcccCH
Q 013559 210 EPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQ---DVATYGGLCALAS---FDRAELKSKVIDNV 283 (441)
Q Consensus 210 d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~~~~~~el~s~~---d~~~Y~~l~al~s---~~R~eLk~~vl~~~ 283 (441)
++..+.++..+.|.++...++|..+...++..+.+++. .+.++.. ..+.-+++|++.+ +.+.+|... |
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~--~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~----p 237 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEP--STSITLAERQQLAYDLSISALLGDKIYNFGELLHH----P 237 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--SSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHS----C
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc--cccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCC----h
Confidence 44567777777888888999999999988887765431 1223333 3456667777775 345666443 3
Q ss_pred hhHhhh--ccchHHHHHHHHHhcCCHHHHHHHHHHhHHhhhhchhHHHHHHHHHHHHHHHHHHHhc--cccccccHHhHH
Q 013559 284 NFRNFL--ELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYT--HPFVSVDLHMMA 359 (441)
Q Consensus 284 ~~~~~l--e~~p~~~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~iR~~~i~qy~--~pYs~I~L~~mA 359 (441)
.+...- ...+.+.+++..|..+++..|...+... ....+++..|...+.+.||..++.+.+ ++|++|+++.||
T Consensus 238 ~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~---~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia 314 (393)
T 4b4t_O 238 IMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQ---ISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDIS 314 (393)
T ss_dssp CTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHH---HHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHH
T ss_pred HHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHh---hhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHH
Confidence 333321 1235689999999999999998776544 345589999999999999999999866 678999999999
Q ss_pred HHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecCCchhHHHHH
Q 013559 360 NAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQR 407 (441)
Q Consensus 360 ~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~d~r~~~~~~ 407 (441)
+.+|++++++|.+++++|.+|.|.||||+++|+|++....+|.-.-++
T Consensus 315 ~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q 362 (393)
T 4b4t_O 315 KATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQ 362 (393)
T ss_dssp HHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC------------
T ss_pred HHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHH
Confidence 999999999999999999999999999999999999876655433333
No 6
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.6e-13 Score=141.92 Aligned_cols=248 Identities=10% Similarity=0.022 Sum_probs=170.7
Q ss_pred HHhHHHHHHHHcCCHHHHHH-----------HHHHHHhhhc--CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc
Q 013559 141 GYNDFGDFYYAHGALGDAFK-----------SYVRTRDYCT--TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE 207 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~-----------~~~~~r~~~~--~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~ 207 (441)
.++-++.+|...|+...... .+...|--|- +......++-.++|.++..+.++.|...++|+. .++
T Consensus 183 ~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~ 261 (523)
T 4b4t_S 183 LWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-YPH 261 (523)
T ss_dssp --------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCT
T ss_pred HHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-CCc
Confidence 34445555666777665321 1222233332 223334455678999999999999999999986 444
Q ss_pred -cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCcCCCCCchhhhcHHHHHHHHHHHHHhcCC---hHHHHHhcccCH
Q 013559 208 -ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFD---RAELKSKVIDNV 283 (441)
Q Consensus 208 -~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~~~~~~el~s~~d~~~Y~~l~al~s~~---R~eLk~~vl~~~ 283 (441)
...+....++..|.|..++.+++|.+|.++|..++.....+.....-...+.+|+++|.|+..+ |+- +..+
T Consensus 262 ~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~l-----f~q~ 336 (523)
T 4b4t_S 262 TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSF-----FHQS 336 (523)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHH-----HTTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHH-----hhch
Confidence 2345567899999999999999999999999998753221111111223455789999988533 322 2223
Q ss_pred hhHhhhccchHHHHHHHHHhcCCHHHHHHHHHHhHHhhhhchhHHHHHHHHHHHHHHHHHHHhccccccccHHhHHHHcC
Q 013559 284 NFRNFLELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFK 363 (441)
Q Consensus 284 ~~~~~le~~p~~~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg 363 (441)
.+++. ..++.++.++|-.++...|...|+..+..+..|--. ..+..+..++....+.....+|++|+|..+|..+|
T Consensus 337 ~l~~~---L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty-~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~ 412 (523)
T 4b4t_S 337 NMQKS---LLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLN 412 (523)
T ss_dssp SCHHH---HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT-HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHH
T ss_pred hHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhC
Confidence 22221 234778999999999999999999999988888533 46677777777788888899999999999999999
Q ss_pred C-ChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 364 T-SVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 364 ~-s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
+ +++++|.-+++||.+|.|+|+||+.+|+|++...
T Consensus 413 L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~ 448 (523)
T 4b4t_S 413 LDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTEL 448 (523)
T ss_dssp HHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSS
T ss_pred CCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCcc
Confidence 9 4788999999999999999999999999998754
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.49 E-value=1.4e-14 Score=114.70 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecCCc
Q 013559 333 TLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQ 400 (441)
Q Consensus 333 ~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~d~ 400 (441)
.|.+.+....+..|.+||++|+|+.||+.||++++++|++|++||.+|+|+||||+++|+|++.++++
T Consensus 11 ~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 11 ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 34444444555567778999999999999999999999999999999999999999999999998765
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.49 E-value=5.4e-13 Score=123.42 Aligned_cols=173 Identities=9% Similarity=0.083 Sum_probs=136.5
Q ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHhcCcCCCCCchhhhcHHHHHHHHHHHHHhcCChHHHHHhcccCHhhHhhhcc
Q 013559 212 VTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLEL 291 (441)
Q Consensus 212 ~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~~~~~~el~s~~d~~~Y~~l~al~s~~R~eLk~~vl~~~~~~~~le~ 291 (441)
.-+.+++.|.|.+++.+++|.+|.+.|.+++...... ..--...+.+|++.+.|+...-.... + ++++ +.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~--~~~~k~~IL~yLIp~~Ll~G~iP~~~--l-----l~~~-~~ 80 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS--SQKNKRMILIYLLPVKMLLGHMPTVE--L-----LKKY-HL 80 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHHHTTCEECHH--H-----HHHT-TC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh--HHHHHHHHHHHHHHHHHHcCCCCCHH--H-----hhhC-ch
Confidence 3467889999999999999999999999998642211 11223446799999999975311100 0 1111 12
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHhHHhhhhchhHHHHHHHHHHHHHHHHHHHhcc------ccccccHHhHHHHcC--
Q 013559 292 VPEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTH------PFVSVDLHMMANAFK-- 363 (441)
Q Consensus 292 ~p~~~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~iR~~~i~qy~~------pYs~I~L~~mA~~fg-- 363 (441)
. .+.+++.++-.++...|.+.|+..+ |+|...++-.+++.+|..++...++ +|++|+++.++.+++
T Consensus 81 ~-~y~~L~~Avr~Gdl~~f~~~l~~~~-----~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~ 154 (203)
T 3t5x_A 81 M-QFAEVTRAVSEGNLLLLHEALAKHE-----AFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFM 154 (203)
T ss_dssp G-GGHHHHHHHHHTCHHHHHHHHHHTH-----HHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHT
T ss_pred h-HHHHHHHHHHhCCHHHHHHHHHHhH-----HHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Confidence 2 4789999999999999999999876 4667777777788888888888877 899999999999995
Q ss_pred ----CChHHHHHHHHHHHHcCccceEecCCCCeEEEecCCc
Q 013559 364 ----TSVAGIEKELEALITDNQIQARIDSHNKILYARHADQ 400 (441)
Q Consensus 364 ----~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~d~ 400 (441)
++.+++|..+++||.+|.|+|+||..+|+++..+.++
T Consensus 155 ~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~p 195 (203)
T 3t5x_A 155 QVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNP 195 (203)
T ss_dssp TCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCS
T ss_pred CCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCC
Confidence 4899999999999999999999999999999887654
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.23 E-value=4.9e-10 Score=115.24 Aligned_cols=239 Identities=10% Similarity=0.016 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHhhhcCc----------hhHHH---HHHHHHHHHHHhcCHHHHHhHHHHHhcc-----cccCChhhh
Q 013559 153 GALGDAFKSYVRTRDYCTTS----------KHIIH---MCMSAILVSIEMGQFTHVTSYVSKAEQT-----PEALEPVTI 214 (441)
Q Consensus 153 Gd~~~A~~~~~~~r~~~~~~----------~~~~~---~~l~~i~~~i~~~~~~~~~~~~~ka~~~-----~~~~d~~~~ 214 (441)
..+++|...+.++...|-+. +.+.- +.-.+++++.-.++...+++.+.-.+.. ++.-...-+
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 34677788888877776321 12222 3345667888888888888766655442 112233467
Q ss_pred hhHHHHHHHHhcccccHHHHHHHHHhcCcC-CCCCc--h-hhhcHHHHHHHHHHHHHhcCCh--HHHHHhcccCHhhHhh
Q 013559 215 AKLRCAAGLAHLEARKYKLAARKFLEVGPD-LGNSY--N-EVIAAQDVATYGGLCALASFDR--AELKSKVIDNVNFRNF 288 (441)
Q Consensus 215 ~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t-~~~~~--~-el~s~~d~~~Y~~l~al~s~~R--~eLk~~vl~~~~~~~~ 288 (441)
.+++.|.|.+++.+++|.+|.+.|.+++.. ..... + ..--...+.+|++.+.|....- ..+-.+.. .+.
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~-~~~---- 294 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFL-SQE---- 294 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGS-CHH----
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccc-hHH----
Confidence 889999999999999999999999999864 21110 0 1122345789999999997432 12211111 011
Q ss_pred hccchHHHHHHHHHhcCCHHHHHHHHHHhHHhhhhchh---HHHHHH-HHHHHHHHHHHHHhcccc--ccccHHhHHHHc
Q 013559 289 LELVPEVRELINDFYSSRYASCLDYLGNLKANLLLDIH---LHDHVE-TLYDQIRNKALIQYTHPF--VSVDLHMMANAF 362 (441)
Q Consensus 289 le~~p~~~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~---L~~h~~-~l~~~iR~~~i~qy~~pY--s~I~L~~mA~~f 362 (441)
..|.+.+++.+.-.+++..|.+.|+..+..+..|-. +-...+ ..++++..+++..|+.+| ++|+++.++.++
T Consensus 295 --L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL 372 (455)
T 3t5v_B 295 --TIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVL 372 (455)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHH
Confidence 223467899999999999999999999876655532 223333 335566666777788889 899999999999
Q ss_pred C---------------------CChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 363 K---------------------TSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 363 g---------------------~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
+ ++.+++|-.+++||.+|.|.|+||..+|+|+..+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 373 QLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred hhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 7 58899999999999999999999999999999877
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.40 E-value=1.2e-06 Score=78.05 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=89.8
Q ss_pred ccCHhhHhhhccc--hHHHHHHHHHhcCCHHHHHHHHHHhHHhhhhchhHHHHHHHHHHHHHHHHHHHhccccccccHHh
Q 013559 280 IDNVNFRNFLELV--PEVRELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHM 357 (441)
Q Consensus 280 l~~~~~~~~le~~--p~~~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~iR~~~i~qy~~pYs~I~L~~ 357 (441)
+..|.+.. |+.. +.+.+++..|..++|..+...- +.+ +-|. ....+.||...+...+.-.+.++.+.
T Consensus 46 L~~p~v~~-L~~~~~~~~~~LL~iF~~G~~~~y~~~~----~~~---p~L~---~~~~~KlrlLtL~sLa~~~~~lsy~~ 114 (169)
T 3chm_A 46 LALPNVAQ-LEGTTDSVYLDLLRLFAHGTWGDYKCNA----TRL---PHLS---PDQILKLKQLTVLTLAESNKVLPYDT 114 (169)
T ss_dssp HTCHHHHT-TTTSTTHHHHHHHHHHHHCCHHHHHHHG----GGS---CCCC---HHHHHHHHHHHHHHHHHHCSEEEHHH
T ss_pred hCChHHHH-hcCCChhHHHHHHHHHhcCCHHHHHHhH----HhC---cchH---HHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34454443 3333 4589999999999998886521 111 2232 67888999999999998899999999
Q ss_pred HHHHcCCC-hHHHHHHHH-HHHHcCccceEecCCCCeEEEecCCch
Q 013559 358 MANAFKTS-VAGIEKELE-ALITDNQIQARIDSHNKILYARHADQR 401 (441)
Q Consensus 358 mA~~fg~s-~~~~E~~L~-~LI~~g~L~akID~~~gvv~~~~~d~r 401 (441)
+++.++++ ++++|.|+. +.|..|-|.||||+++++|++....+|
T Consensus 115 I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R 160 (169)
T 3chm_A 115 LMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGR 160 (169)
T ss_dssp HHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCC
Confidence 99999999 999999999 999999999999999999999876554
No 11
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.90 E-value=0.0027 Score=60.43 Aligned_cols=184 Identities=11% Similarity=0.012 Sum_probs=114.3
Q ss_pred HHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCc---hhHHHHHHHHHHHHHHh-cCHHHHHhHHHHHhcccc-cCCh
Q 013559 137 SIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTS---KHIIHMCMSAILVSIEM-GQFTHVTSYVSKAEQTPE-ALEP 211 (441)
Q Consensus 137 sir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~---~~~~~~~l~~i~~~i~~-~~~~~~~~~~~ka~~~~~-~~d~ 211 (441)
..-.++..+|..|.+.|++++|..+|.+..+..... ......+.++..+.... |+++.+..+..++-.+.. .+++
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 344688999999999999999999999986655322 22344555666666665 999999999999977643 3333
Q ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHhcCcCCCCCchhh-hcHHHHHHHHHHHHHhcCChHHHHHhcccCHhhHhhhc
Q 013559 212 VTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEV-IAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLE 290 (441)
Q Consensus 212 ~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~~~~~~el-~s~~d~~~Y~~l~al~s~~R~eLk~~vl~~~~~~~~le 290 (441)
........--|.++...|+|.+|...|-.+....... +.. .+..+...-.++|-+...+-.+-.. .+...++
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~------~~~~al~ 227 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN-RLSQWSLKDYFLKKGLCQLAATDAVAAAR------TLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC-TTTGGGHHHHHHHHHHHHHHTTCHHHHHH------HHHGGGC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHh
Confidence 3333344445778899999999999999876533221 111 1111111223344443333211111 1222333
Q ss_pred cch---------HHHHHHHHHhcCCHHHHHHHHHHhHHhhhhchhH
Q 013559 291 LVP---------EVRELINDFYSSRYASCLDYLGNLKANLLLDIHL 327 (441)
Q Consensus 291 ~~p---------~~~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L 327 (441)
..| .+..++..+...+...+.+.+..+...+..|+..
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 333 2456677776677777888888887777777754
No 12
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.79 E-value=0.00028 Score=65.95 Aligned_cols=123 Identities=14% Similarity=0.140 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCChHHHHHhc--ccCHhhHhhhccchHH---HHHHHHHhcCCHHHHHHHHHHhHHhhhhchhHHHHHH
Q 013559 258 VATYGGLCALASFDRAELKSKV--IDNVNFRNFLELVPEV---RELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVE 332 (441)
Q Consensus 258 ~~~Y~~l~al~s~~R~eLk~~v--l~~~~~~~~le~~p~~---~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~ 332 (441)
+..|-+|.-|.+.+..++..-+ +...+ .+...|.+ .++-.++..++|..|+..+... ..+.....++
T Consensus 99 ~~~~~LL~lL~~~~~~ef~~~le~l~~~~---~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~-----p~~~~~~~~~ 170 (229)
T 4b0z_A 99 VTGLNLLYLLSENRIAEFHTALESVPDKS---LFERDPYVEWVISLEQNVMEGAFDKVASMIRSC-----NFPEFSYFMK 170 (229)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHCSCTT---HHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CCGGGHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHhcChHH---HhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC-----ccchHHHHHH
Confidence 3355566667776666553311 11111 12345554 4566778899999999888764 1233455678
Q ss_pred HHHHHHHHHHHHHhccccccccHHhHHHHcCC-ChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 333 TLYDQIRNKALIQYTHPFVSVDLHMMANAFKT-SVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 333 ~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~-s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
.|+..+|..++....++|.+|+++.+++.||+ |.++++..+.+- +=.|+ +|+|++.
T Consensus 171 ~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~------gw~i~--dg~i~F~ 227 (229)
T 4b0z_A 171 IVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER------GWDIR--DGVIYFP 227 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH------TCEEE--TTEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc------CCEEe--CCEEecC
Confidence 99999999999999999999999999999999 566776666552 12443 6666654
No 13
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.74 E-value=0.00036 Score=58.04 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=82.8
Q ss_pred HHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc-cc-cCChhhh
Q 013559 137 SIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT-PE-ALEPVTI 214 (441)
Q Consensus 137 sir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~-~~-~~d~~~~ 214 (441)
+.-.++..+|..+++.|+|++|+++|.+..+..+.. ...+.++..+.+..|+|+.+.....++-.+ ++ ..++...
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 334578899999999999999999999998775432 456677778889999999999999998764 23 3455555
Q ss_pred hhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 215 AKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 215 ~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.+...-.|..+...++|.+|.+.|-.+..
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666678899999999999999877654
No 14
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.65 E-value=0.0015 Score=54.14 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=83.2
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCCh
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEP 211 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~ 211 (441)
.....++..+|..|...|++++|.+++.+..+... .+.....+...+..+....|+++.+...+.++-.... .+++
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence 33445788999999999999999999999866542 3344456677777888899999999999999877654 3455
Q ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 212 VTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 212 ~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.........-|..+...|+|.+|...|-.+..
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55556666678888899999999888877643
No 15
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.53 E-value=0.0017 Score=56.83 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=91.3
Q ss_pred HHHHHHHHhhhhHHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc----CchhHHHHHHHHHHHHHHhcCHHHHHhH
Q 013559 123 ENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT----TSKHIIHMCMSAILVSIEMGQFTHVTSY 198 (441)
Q Consensus 123 e~el~~~~~n~~~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~----~~~~~~~~~l~~i~~~i~~~~~~~~~~~ 198 (441)
+.-+.-++........-.++..+|..|...|++++|.+++.+..+.+. .+.........+..+....|+++.+..+
T Consensus 50 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 129 (203)
T 3gw4_A 50 QALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE 129 (203)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 333333344444555667899999999999999999999999876643 2224456677778888999999999999
Q ss_pred HHHHhcccc-cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 199 VSKAEQTPE-ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 199 ~~ka~~~~~-~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+.++-.... .+++.........-|..+...|+|.+|...|-++..
T Consensus 130 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 130 YEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999877644 445555556566778888999999999999988765
No 16
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.53 E-value=0.015 Score=54.04 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=85.4
Q ss_pred HHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCC
Q 013559 135 KESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALE 210 (441)
Q Consensus 135 ~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d 210 (441)
......++..+|..|...|++++|.+++.+..+.+. .+......+..+..+....|+++.+...+.++..... .++
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 344556889999999999999999999999866543 3344455777788888999999999999999877544 345
Q ss_pred hhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 211 ~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+.........-|..+...|+|.+|...|-.+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555556666678888999999999998877754
No 17
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.49 E-value=0.025 Score=53.99 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=79.9
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCc---hhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCCh
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTS---KHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEP 211 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~---~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~ 211 (441)
.....++..+|..|.. |++++|.++|.+..+..... ......+..+..+....|+++.+..++.++-.... ..++
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 3445688899999999 99999999999987665422 23456677788888999999999999999877543 2232
Q ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHhcC
Q 013559 212 VTIAKLRCAAGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 212 ~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
..........|+.++..|+|..|...|-.+.
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2333445556778888899999999998877
No 18
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.46 E-value=0.0057 Score=55.81 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=83.5
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhh-----cCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc---
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYC-----TTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE--- 207 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~-----~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~--- 207 (441)
+....++..+|..|...|++++|.++|.+..+.+ .........+..+..+....|+|+.+...+.++-....
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 3445688999999999999999999999986654 22345677788888888999999999999999877633
Q ss_pred cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 208 ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 208 ~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+.+..........-|..+...|+|.+|...|-.+..
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122223344555667888899999999999987764
No 19
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.46 E-value=0.0095 Score=58.35 Aligned_cols=122 Identities=10% Similarity=0.042 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhhh-HHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHh
Q 013559 122 LENELNAYRTNLI-KESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTS 197 (441)
Q Consensus 122 Le~el~~~~~n~~-~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~ 197 (441)
++.-++-++.... ...+..++..+|..|...|++++|.++|.+..+.+. .+........++..+....|+++.+..
T Consensus 166 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP 245 (383)
T ss_dssp HHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3333443333332 455567899999999999999999999999876553 333445567778888899999999999
Q ss_pred HHHHHhcccc-cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 198 YVSKAEQTPE-ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 198 ~~~ka~~~~~-~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
++.++-.... ..+..........-|..+...|+|.+|...|-.+..
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999987654 234122345555678888899999999999988764
No 20
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.45 E-value=0.008 Score=56.04 Aligned_cols=113 Identities=14% Similarity=0.051 Sum_probs=86.3
Q ss_pred hhhhHHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc
Q 013559 131 TNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE 207 (441)
Q Consensus 131 ~n~~~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~ 207 (441)
..........++..+|..+...|++++|.+++.+..+.+. .+.........+..+....|+++.+..++.++.....
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3333444556889999999999999999999999866543 2333455667788888999999999999999877644
Q ss_pred -cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 208 -ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 208 -~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.+++.........-|..+...|+|.+|...|-.+..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444555556678888899999999999887754
No 21
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.44 E-value=0.0018 Score=53.65 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=85.0
Q ss_pred HHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCChhh
Q 013559 138 IRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEPVT 213 (441)
Q Consensus 138 ir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~~~ 213 (441)
...++..+|..|+..|++++|.+++.+..+.+. .+.........+..+....|+++.+..++.++..... .+++..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 345789999999999999999999999866553 3344445677777888999999999999999887654 455555
Q ss_pred hhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 214 IAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 214 ~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.......-|..+...|+|.+|...|-.+..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666667778899999999999999887754
No 22
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.43 E-value=0.015 Score=56.87 Aligned_cols=108 Identities=12% Similarity=0.021 Sum_probs=84.3
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCCh
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEP 211 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~ 211 (441)
.....++..+|..|+..|++++|.++|.+..+.+. ...........+..+....|+++.+...+.++-.... .+++
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 44556889999999999999999999999866553 3333445667778888999999999999999877644 3444
Q ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 212 VTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 212 ~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.........-|..+...|+|.+|...|-.+..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666678888999999999998887754
No 23
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.42 E-value=0.01 Score=57.54 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=86.8
Q ss_pred HhhhhHHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccc
Q 013559 130 RTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTP 206 (441)
Q Consensus 130 ~~n~~~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~ 206 (441)
........+..++..+|..|...|++++|.++|.+..+... ........+..+..+....|+++.+..++.++-...
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 33333445556899999999999999999999999865543 333345667778888899999999999999987764
Q ss_pred c-cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 207 E-ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 207 ~-~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
. .+++.........-|..+...|+|.+|...|-.+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 344444555666678888899999999999988764
No 24
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.41 E-value=0.017 Score=55.80 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=85.4
Q ss_pred HHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCC
Q 013559 135 KESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALE 210 (441)
Q Consensus 135 ~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d 210 (441)
....-.++..+|..|...|++++|.+++.+..+.+. .+......+..+..+....|+++.+..++.++-.... .++
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 445556889999999999999999999999866543 3344455677788888999999999999999877544 345
Q ss_pred hhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 211 ~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+.........-|..+...|+|.+|...|-.+..
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 555555666678888999999999999887754
No 25
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.40 E-value=0.0068 Score=59.44 Aligned_cols=121 Identities=10% Similarity=0.010 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhhh-HHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHh
Q 013559 122 LENELNAYRTNLI-KESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTS 197 (441)
Q Consensus 122 Le~el~~~~~n~~-~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~ 197 (441)
++.-++-++.+.. ...+..++..+|..|...|++++|.++|.+..+.+. .+........++..+....|+++.+..
T Consensus 164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3333443443332 445667899999999999999999999999876553 333445566777888889999999999
Q ss_pred HHHHHhcccc-cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 198 YVSKAEQTPE-ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 198 ~~~ka~~~~~-~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
++.++-.... ..+|.. ......-|..+...|+|.+|...|-.+..
T Consensus 244 ~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999987654 234444 55556678888999999999999988764
No 26
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.35 E-value=0.0017 Score=53.84 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=80.1
Q ss_pred hHHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhh
Q 013559 134 IKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVT 213 (441)
Q Consensus 134 ~~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~ 213 (441)
|.++.-.++..+|..|++.|+|++|.++|.+..+..... ...+.....+....|+|..+...+.++-.+-. .++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~-- 81 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFI-- 81 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH--
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhh--
Confidence 445666788899999999999999999999987765332 45667777888899999999999999876521 122
Q ss_pred hhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 214 IAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 214 ~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
......|..+...|+|.+|...|-.+..
T Consensus 82 --~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 82 --KGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2345578889999999999999988764
No 27
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.32 E-value=0.01 Score=55.19 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=84.0
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhh-----cCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc---
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYC-----TTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE--- 207 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~-----~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~--- 207 (441)
.....++..+|..|...|++++|.++|.+..+.+ ............+..+....|+|+.+...+.++.....
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3445688999999999999999999999987765 33455667777888888999999999999999877643
Q ss_pred cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 208 ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 208 ~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+.+..........-|..+...|+|.+|...|-.+..
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122233344555567788899999999999988764
No 28
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.32 E-value=0.024 Score=52.15 Aligned_cols=104 Identities=10% Similarity=0.041 Sum_probs=82.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc-cccCChhhhhhHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT-PEALEPVTIAKLR 218 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~-~~~~d~~~~~~l~ 218 (441)
..++.+|..+++.|++++|.+.|.++...........+..+.+..+....|+|..+...+.++-.. ++. + ......
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--~-~~~~a~ 92 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--P-RVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--T-THHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--c-hhHHHH
Confidence 478999999999999999999999998877666566788888899999999999999999998764 321 1 112233
Q ss_pred HHHHHHhcc--------cccHHHHHHHHHhcCcCCC
Q 013559 219 CAAGLAHLE--------ARKYKLAARKFLEVGPDLG 246 (441)
Q Consensus 219 ~~~gl~~l~--------~r~y~~Aa~~Fl~~~~t~~ 246 (441)
...|..++. .|+|.+|...|-.+...++
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 446777777 9999999999988775443
No 29
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.31 E-value=0.0087 Score=57.23 Aligned_cols=107 Identities=10% Similarity=-0.015 Sum_probs=80.0
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcC---chhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCCh
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTT---SKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEP 211 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~---~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~ 211 (441)
.....++..+|..|...|++++|.++|.+..+.... +......+..+..+... |+++.+..++.++-.+.. .+++
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 445568899999999999999999999998665432 22334455555555555 999999999999987654 3444
Q ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 212 VTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 212 ~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
........--|.++...|+|.+|...|-.+..
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444445567788899999999999988865
No 30
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.30 E-value=0.0022 Score=51.96 Aligned_cols=105 Identities=10% Similarity=-0.050 Sum_probs=80.6
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.+|..++..|++++|.+.|.++.....+.....+..+....+....|+|+.+...+.++-..... + ........
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~-~~~~~~~~ 80 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-H-DKAAGGLL 80 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-S-TTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-C-cccHHHHH
Confidence 357889999999999999999999987766555555577788888899999999999999988664221 1 11223344
Q ss_pred HHHHHhcccccHHHHHHHHHhcCcCCC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGPDLG 246 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~t~~ 246 (441)
..|..+...|+|.+|...|-.+...++
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 568888899999999999988765443
No 31
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.20 E-value=0.005 Score=49.19 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=79.2
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc--cCChhhhhhH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE--ALEPVTIAKL 217 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~--~~d~~~~~~l 217 (441)
..++.+|..++..|++++|.++|.+........ ...+..+..+....|+|+.+...+.++-.... ..++......
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 467899999999999999999999987765332 45666777788889999999999999876532 2344333555
Q ss_pred HHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 218 RCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 218 ~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
...-|..+...|+|.+|...|-.+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66678888999999999999887764
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.20 E-value=0.03 Score=51.13 Aligned_cols=98 Identities=8% Similarity=0.036 Sum_probs=73.4
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
.++.+|..++..|++++|.+.|.+..+..... ......+..+....|+++.+...+.++-... .++.........
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 79 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEY 79 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHH
Confidence 46788999999999999999999886654332 2244556667788899999999988887733 344444455566
Q ss_pred HHHHhcccccHHHHHHHHHhcCc
Q 013559 221 AGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-|..+...|+|.+|...|-.+..
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 78888889999999888887765
No 33
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.19 E-value=0.019 Score=56.19 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=73.4
Q ss_pred HHHHHhHHhHHHHHHHHcCC-----------------HHHHHHHHHHHHhhh---cCchhHHHHHHHHHHHHHHhcCHHH
Q 013559 135 KESIRMGYNDFGDFYYAHGA-----------------LGDAFKSYVRTRDYC---TTSKHIIHMCMSAILVSIEMGQFTH 194 (441)
Q Consensus 135 ~esir~~~~~la~~~~~~Gd-----------------~~~A~~~~~~~r~~~---~~~~~~~~~~l~~i~~~i~~~~~~~ 194 (441)
......++..+|..|...|+ +++|.++|.+..+.+ .........+..+..+....|+++.
T Consensus 162 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 241 (411)
T 4a1s_A 162 RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQA 241 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHH
Confidence 34445577888888888888 888888877765443 2233344566666777777888888
Q ss_pred HHhHHHHHhcccc-cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 195 VTSYVSKAEQTPE-ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 195 ~~~~~~ka~~~~~-~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+..++.++-.... .+++.........-|..++..|+|.+|...|-.+..
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 242 AIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 8888887766543 234444445556667777888888888887776653
No 34
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.15 E-value=0.055 Score=51.13 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=79.7
Q ss_pred HHHHhHHhHHHHHHHHc-CCHHHHHHHHHHHHhhhcCc---hhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCC
Q 013559 136 ESIRMGYNDFGDFYYAH-GALGDAFKSYVRTRDYCTTS---KHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALE 210 (441)
Q Consensus 136 esir~~~~~la~~~~~~-Gd~~~A~~~~~~~r~~~~~~---~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d 210 (441)
.....++..+|..|... |++++|.++|.+..+..... .....+...+..+.+..|+++.+...+.++-.... ...
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 33456889999999996 99999999999987665422 22345667778888999999999999999877543 212
Q ss_pred hh-hhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 211 PV-TIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 211 ~~-~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.. .........|+.++..|++..|...|-.+..
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 10 1112334468888999999999999988764
No 35
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.05 E-value=0.0013 Score=49.20 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=53.8
Q ss_pred HHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 341 KALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 341 ~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
+.++.|++..+.|.|+.||..||++.+++-+.|-.|..+|+|.+-||-.-+.|+..+.
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 5678899999999999999999999999999999999999999999999888887754
No 36
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.02 E-value=0.0099 Score=54.16 Aligned_cols=108 Identities=9% Similarity=-0.010 Sum_probs=84.1
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhh-----cCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc---
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYC-----TTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE--- 207 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~-----~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~--- 207 (441)
+....++..+|..|+..|++++|.++|.+..+.. .........+..+..+....|+++.+..++.++-....
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 3445688999999999999999999999987665 33455677788888889999999999999999977643
Q ss_pred cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 208 ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 208 ~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+.+..........-|..+...|+|.+|...|-.+..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122223344455567788899999999999888764
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.00 E-value=0.015 Score=50.16 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=75.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
..++.+|..|.+.|++++|.++|.+..+...+ + .+....+..+....|+|+.+...+.++...... ++ ....
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--~-~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 77 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--N-VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SA----EAYY 77 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CH----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hH----HHHH
Confidence 36889999999999999999999998776432 2 566777888889999999999998888664321 21 2334
Q ss_pred HHHHHhcccccHHHHHHHHHhcCcC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
..|......++|..|...|-.+...
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~ 102 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIAL 102 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677788899999999988877643
No 38
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.94 E-value=0.0067 Score=52.94 Aligned_cols=105 Identities=9% Similarity=0.008 Sum_probs=84.0
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cC-Chhh
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-AL-EPVT 213 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~-d~~~ 213 (441)
-.++..+|..+...|++++|.+++.+..+.+. .+.........+..+....|+++.+..++.++..... .+ ++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 35788999999999999999999999877654 3344456667777788999999999999999988755 33 4445
Q ss_pred hhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 214 IAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 214 ~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.......-|..+...|+|.+|...|-++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 556666778889999999999999988764
No 39
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.0085 Score=49.24 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=78.0
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
..++.+|..++..|++++|.++|.+..............+..+..+....|+|..+...+.++-.... .+ .....
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~ 103 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GD----VKALY 103 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CC----HHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cC----HHHHH
Confidence 36788999999999999999999999877655444567777888888999999999999988866421 12 23334
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..+...++|.+|...|-.+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567788889999999999887764
No 40
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.87 E-value=0.0082 Score=51.20 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=77.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcC---------------chhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTT---------------SKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQ 204 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~---------------~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~ 204 (441)
..+..+|..+++.|+|.+|.++|.+....+.. ......++.+...+.+..|+|..+..+..++-.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 46789999999999999999999998766321 233456778888889999999999999999866
Q ss_pred ccccCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 205 TPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 205 ~~~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+- ..++ +.....|.++...|+|.+|...|-.+..
T Consensus 92 ~~-p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 RE-ETNE----KALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HS-TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC-Ccch----HHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 52 1122 3345568889999999999999887754
No 41
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.86 E-value=0.041 Score=51.85 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=64.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhh---cCchh-HHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCChhhh
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYC---TTSKH-IIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEPVTI 214 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~---~~~~~-~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~~~~ 214 (441)
.++..+|..|...|++++|.++|.+..+.+ ..... ....+.++..+....|+|+.|..++.++-.... .+++...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 467777888888888888888887775432 22222 225666677777777888888877777765433 2333344
Q ss_pred hhHHHHHHHHhcccccHHHH-HHHHHhc
Q 013559 215 AKLRCAAGLAHLEARKYKLA-ARKFLEV 241 (441)
Q Consensus 215 ~~l~~~~gl~~l~~r~y~~A-a~~Fl~~ 241 (441)
..+....|.++...|+|.+| ..+|-.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 55555667777777777777 4444433
No 42
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.85 E-value=0.01 Score=58.09 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=83.5
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcC----chhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCC
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTT----SKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALE 210 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~----~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d 210 (441)
...-.++..+|..|+..|++.+|.+++.+..+.+.. ..........+..+....|+|+.+..++.++-.... .++
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 344568899999999999999999999998766542 233455666677778888999999999999877644 445
Q ss_pred hhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 211 ~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+.........-|..+...|+|.+|...|-.+..
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555556666678888899999999999988765
No 43
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.012 Score=47.66 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=75.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
..+..+|..++..|++++|.++|.+........ .........+....|+|+.+...+.++-..-. .+ .....
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~----~~~~~ 76 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NF----VRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC----HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-Cc----HHHHH
Confidence 467899999999999999999999987765432 45667777888899999999999999876521 12 22345
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..+...|+|.+|...|-.+..
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHH
Confidence 568888999999999999887753
No 44
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.84 E-value=0.02 Score=53.05 Aligned_cols=108 Identities=11% Similarity=0.049 Sum_probs=84.5
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhh-----cCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc---
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYC-----TTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE--- 207 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~-----~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~--- 207 (441)
.....++..+|..|...|++++|.++|.+..... ............+..+....|+++.+...+.++.....
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 3444678999999999999999999999986664 33455677788888888999999999999999877643
Q ss_pred cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 208 ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 208 ~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+.++.........-|..+...|+|.+|...|-.+..
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123333445555668888999999999999888754
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.81 E-value=0.14 Score=45.97 Aligned_cols=98 Identities=12% Similarity=-0.003 Sum_probs=68.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..|...|++++|.++|.++.+..... ......+..+....|+++.+...+.++-.... ++. ......
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~-~~~~~~ 145 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL--YPE-RSRVFE 145 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTT--CTT-HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcc--Ccc-cHHHHH
Confidence 366788888999999999999988886654322 34556667777888899998888888766111 111 123334
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..++..|+|.+|...|-.+..
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 146 NLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677788889988888887754
No 46
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.81 E-value=0.014 Score=45.18 Aligned_cols=100 Identities=9% Similarity=-0.052 Sum_probs=76.7
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.+|..++..|++++|.++|.+........ ....+....+....|+|+.+...+.++-.... . ........
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~--~~~~~~~~ 80 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVIE-D--EYNKDVWA 80 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-C--TTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-c--cchHHHHH
Confidence 356889999999999999999999987765432 34566777788889999999999999876532 1 01123445
Q ss_pred HHHHHhccc-ccHHHHHHHHHhcCcCC
Q 013559 220 AAGLAHLEA-RKYKLAARKFLEVGPDL 245 (441)
Q Consensus 220 ~~gl~~l~~-r~y~~Aa~~Fl~~~~t~ 245 (441)
..|..+... |+|.+|.+.|..+....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 567788999 99999999999887643
No 47
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.79 E-value=0.011 Score=57.82 Aligned_cols=108 Identities=9% Similarity=-0.035 Sum_probs=78.5
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcC----chhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCC
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTT----SKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALE 210 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~----~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d 210 (441)
.....+++.+|..|+..|++..|.+++.+..+.... ..........+..+....|+|+.+..++.++-.... .++
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 217 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence 445567888889999999999999888887665532 223455666677777888899988888888876544 344
Q ss_pred hhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 211 ~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+.........-|..+...|+|.+|...|-.+..
T Consensus 218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555667788888899888888887765
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.062 Score=48.14 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=75.7
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc--cCChhhhhhH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE--ALEPVTIAKL 217 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~--~~d~~~~~~l 217 (441)
.++..+|..++..|++++|.++|.+..... .. .+.......+....|+|+.+...+.++-.... ..++......
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 477889999999999999999999886665 22 45667777788889999999998888866432 1233333455
Q ss_pred HHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 218 RCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 218 ~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
...-|..+...|+|.+|...|-.+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 56677788889999999888887765
No 49
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.76 E-value=0.021 Score=49.12 Aligned_cols=101 Identities=13% Similarity=0.036 Sum_probs=79.4
Q ss_pred HHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhh
Q 013559 135 KESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTI 214 (441)
Q Consensus 135 ~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~ 214 (441)
.++-..+++.+|..+++.|++++|.++|.++....... .+...++..+....|+|+.+...+.++-.+-- .++.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~-- 105 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYT-- 105 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCH--
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcH--
Confidence 34555689999999999999999999999987764322 44666777788899999999999999876522 2332
Q ss_pred hhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 215 AKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 215 ~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.....|..++..|+|.+|...|-.+..
T Consensus 106 --~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 106 --PVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234568889999999999999988764
No 50
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0033 Score=49.29 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=70.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCChhhhhhHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEPVTIAKLR 218 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~~~~~~l~ 218 (441)
.++..+|..++..|++++|.++|.+........ .........+....|+|+.+...+.++-.... ..++.......
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 367889999999999999999999987765432 45567777888999999999999999877533 33444444444
Q ss_pred HHHHHHhcccccHHHHHHHHHh
Q 013559 219 CAAGLAHLEARKYKLAARKFLE 240 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~Fl~ 240 (441)
...|..+...|++..|...|-.
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 5556666666665555444333
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.70 E-value=0.3 Score=43.38 Aligned_cols=99 Identities=9% Similarity=0.037 Sum_probs=76.5
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
..++.+|..++..|++++|.++|.+..+....+.. ...+....+....|+|+.+...+.++-..-. . ......
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~-~~~~~~ 80 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIKKNY----N-LANAYI 80 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----S-HHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc----c-hHHHHH
Confidence 46789999999999999999999999777642222 4455577788889999999999999876422 1 123345
Q ss_pred HHHHHhcccccHHHHHHHHHhcCcCC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGPDL 245 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~t~ 245 (441)
..|..+...|+|.+|...|-.+....
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 57888899999999999998887543
No 52
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.66 E-value=0.17 Score=47.41 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=79.9
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhh----cCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCChhh
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYC----TTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEPVT 213 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~----~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~~~ 213 (441)
..++..+|..|...|++++|.++|.++.+.. ........++.++..+....|+++.+..++.++-.... .++...
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 3468899999999999999999999886533 23445566778888888999999999999999877543 334445
Q ss_pred hhhHHHHHHHHhcccc-cHHHHHHHHHhcC
Q 013559 214 IAKLRCAAGLAHLEAR-KYKLAARKFLEVG 242 (441)
Q Consensus 214 ~~~l~~~~gl~~l~~r-~y~~Aa~~Fl~~~ 242 (441)
.+.+....|.++...| +|.+|...|-.+.
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5667777888888888 5788888877664
No 53
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.66 E-value=0.019 Score=48.96 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=77.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
..++.+|..++..|++++|.++|.+..+..... ...+..+..+.+..|+|..+...+.++-..-. .+ .....
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~----~~~~~ 83 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KY----SKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC----HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CC----HHHHH
Confidence 478899999999999999999999987775432 45677778888999999999999999876532 12 23345
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..+...|+|.+|...|-.+..
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 568888999999999999988764
No 54
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.65 E-value=0.02 Score=46.65 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=75.9
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
..++.+|..++..|++++|.++|.+........ ..+......+....|+|+.+...+.++-..-. .++ ....
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~----~~~~ 81 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDG-QSV----KAHF 81 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhH----HHHH
Confidence 467899999999999999999999987765432 45677778888899999999999998876422 122 2345
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..+...|+|.+|...|-.+..
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567888899999999998887753
No 55
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.64 E-value=0.023 Score=53.67 Aligned_cols=104 Identities=7% Similarity=-0.092 Sum_probs=79.7
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc--cCChhhh
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE--ALEPVTI 214 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~--~~d~~~~ 214 (441)
..++.+|.++...|++++|.++|.+..+... .......++..+..+....|+|+.+..++.++-...+ ..++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 3466799999999999999999999865442 3334466777778888899999999999999976543 2233333
Q ss_pred hhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 215 AKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 215 ~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
......-|..+...|+|.+|...|-.+..
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35556678889999999999999887753
No 56
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.62 E-value=0.021 Score=48.45 Aligned_cols=97 Identities=8% Similarity=-0.090 Sum_probs=73.6
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhh
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIA 215 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~ 215 (441)
++--.+++.+|..|++.|+|++|.++|.+..+..... .+....+..+....|+++.+...+.++-.+- ..++..
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~-- 101 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---PKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDL-- 101 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH--
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHH--
Confidence 3444578999999999999999999999987764322 4566777778889999999999999986642 123322
Q ss_pred hHHHHHHHHhcccccHHHHHHHHHh
Q 013559 216 KLRCAAGLAHLEARKYKLAARKFLE 240 (441)
Q Consensus 216 ~l~~~~gl~~l~~r~y~~Aa~~Fl~ 240 (441)
...-|..++..++|.+|+..|++
T Consensus 102 --~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 102 --VLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp --HHHHHHHHHHHCSSSSHHHHHHH
T ss_pred --HHHHHHHHHHcCChHHHHHHHHH
Confidence 23346677888999999988875
No 57
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.53 E-value=0.023 Score=52.32 Aligned_cols=107 Identities=11% Similarity=-0.005 Sum_probs=80.5
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH--------hcCHHHHHhHHHHHhcc-cccC
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE--------MGQFTHVTSYVSKAEQT-PEAL 209 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~--------~~~~~~~~~~~~ka~~~-~~~~ 209 (441)
..+++.+|..|+..|++++|.+.|.++.....+.....+..+.+..+... .|+++.+...+.++-.. ++..
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 35789999999999999999999999988766555556777777777777 89999999999988664 3311
Q ss_pred -ChhhhhhH----------HHHHHHHhcccccHHHHHHHHHhcCcCC
Q 013559 210 -EPVTIAKL----------RCAAGLAHLEARKYKLAARKFLEVGPDL 245 (441)
Q Consensus 210 -d~~~~~~l----------~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~ 245 (441)
.+....++ ....|.+++..|+|.+|...|-.+...+
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 11111111 1445888899999999999998876544
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.52 E-value=0.23 Score=50.52 Aligned_cols=96 Identities=9% Similarity=-0.116 Sum_probs=77.2
Q ss_pred hHHhHHHHHHHHcCCH-HHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 140 MGYNDFGDFYYAHGAL-GDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~-~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
.+++.+|..|+..|++ ++|.++|.+..+.... ..+....+..+....|+|+.+...+.++-..- |. ....
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~ 173 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC----KN--KVSL 173 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC----CC--HHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CC--HHHH
Confidence 4789999999999999 9999999998776432 24567777888899999999999999987652 22 2444
Q ss_pred HHHHHHhccc---------ccHHHHHHHHHhcCcC
Q 013559 219 CAAGLAHLEA---------RKYKLAARKFLEVGPD 244 (441)
Q Consensus 219 ~~~gl~~l~~---------r~y~~Aa~~Fl~~~~t 244 (441)
..-|..+... |+|.+|...|-.+..-
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 5567788888 9999999999887653
No 59
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.51 E-value=0.049 Score=43.05 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=75.9
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
..++..+|..++..|++++|.+.|.+........ ......+..+....|+|..+...+.++-.... .++ ...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~ 83 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYS----KAY 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCH----HHH
Confidence 3578899999999999999999999987665332 45667777788899999999999998866421 122 234
Q ss_pred HHHHHHhcccccHHHHHHHHHhcCc
Q 013559 219 CAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
...|..+...++|.+|...|-.+..
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5567788899999999999988764
No 60
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.48 E-value=0.034 Score=43.20 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=75.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
..++.+|..++..|++++|.++|.+........ ....+.+..+....|+|+.+...+.++-.... .++ ....
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~ 76 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWG----KGYS 76 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH----HHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccH----HHHH
Confidence 467899999999999999999999987765332 45667777788889999999999988866421 122 2334
Q ss_pred HHHHHhcccccHHHHHHHHHhcCcC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
..|..+...|+|.+|...|-.+...
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 5677788899999999999887653
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.47 E-value=0.12 Score=46.08 Aligned_cols=100 Identities=7% Similarity=-0.049 Sum_probs=78.8
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhh---hhhH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVT---IAKL 217 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~---~~~l 217 (441)
+++.+|..++..|++++|.++|.+....... .......+..+....|+++.+...+.++-.... .++.. ....
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~ 119 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIY 119 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHH
Confidence 5667999999999999999999998766432 456777788888999999999999999876432 13222 2334
Q ss_pred HHHHHHHhcccccHHHHHHHHHhcCcC
Q 013559 218 RCAAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 218 ~~~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
....|..+...|+|.+|...|-.+...
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 566788889999999999999998754
No 62
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.44 E-value=0.047 Score=45.58 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=76.1
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
-..+..+|..++..|++++|.++|.+........ ......+..+....|+|..+...+.++-.... .++ ...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~----~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYI----KGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccH----HHH
Confidence 3578899999999999999999999987765432 45667777788899999999999998876522 122 233
Q ss_pred HHHHHHhcccccHHHHHHHHHhcCc
Q 013559 219 CAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
...|..+...|+|.+|...|-.+..
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788899999999999988764
No 63
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.43 E-value=0.16 Score=45.63 Aligned_cols=104 Identities=10% Similarity=0.075 Sum_probs=74.2
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc-cccCChhhhhhHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT-PEALEPVTIAKLRC 219 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~-~~~~d~~~~~~l~~ 219 (441)
+++.+|..+++.|++++|.+.|.++...........+..+.+..+....|+|..+...+.++-.. ++. +.. .....
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~--~~~-~~a~~ 82 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--PNI-DYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TTH-HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--CcH-HHHHH
Confidence 57889999999999999999999997766555555667778888889999999999998887653 331 111 00111
Q ss_pred HHHHHh------------------cccccHHHHHHHHHhcCcCCCC
Q 013559 220 AAGLAH------------------LEARKYKLAARKFLEVGPDLGN 247 (441)
Q Consensus 220 ~~gl~~------------------l~~r~y~~Aa~~Fl~~~~t~~~ 247 (441)
..|..+ ...|++.+|...|-.+...+++
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 223322 3468999999999888766543
No 64
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.42 E-value=0.02 Score=45.87 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=74.5
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.+|..++..|++++|.++|.+........ .+....+..+....|+|+.+...+.++-.... .++ ....
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~----~~~~ 88 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFI----KGYT 88 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCH----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-Cch----HHHH
Confidence 578899999999999999999999987654322 45666777778889999999999998876422 122 2344
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..+...|+|.+|...|-.+..
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567788899999999999988764
No 65
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.39 E-value=0.049 Score=46.12 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=76.4
Q ss_pred HHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhh
Q 013559 137 SIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAK 216 (441)
Q Consensus 137 sir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~ 216 (441)
+-..+++.+|..++..|++++|.++|.+........ ....+....+....|+|+.+...+.++-.+-- .++.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~---- 90 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPR---- 90 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTH----
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCch----
Confidence 334578899999999999999999999987664332 44556677788899999999999999866521 2332
Q ss_pred HHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 217 LRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 217 l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.....|..++..|+|.+|...|-.+..
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 235568889999999999999887754
No 66
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.43 Score=42.46 Aligned_cols=103 Identities=14% Similarity=0.110 Sum_probs=66.1
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCc----hhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccccc--------
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTS----KHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEA-------- 208 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~----~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~-------- 208 (441)
++..+|..|...|++++|.+++.+..+..... .........+..+....|+|+.+...+.++......
T Consensus 40 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 119 (258)
T 3uq3_A 40 YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLR 119 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHh
Confidence 56677777777777777777777765543211 112455666666677777777777777776553210
Q ss_pred --------------CChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCcC
Q 013559 209 --------------LEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 209 --------------~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
.+|. ........|..++..|+|.+|...|-.+...
T Consensus 120 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 1121 2234455677888899999999998887653
No 67
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.29 E-value=0.18 Score=48.25 Aligned_cols=61 Identities=7% Similarity=-0.005 Sum_probs=32.5
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhc
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQ 204 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~ 204 (441)
+++.+|..|...|++++|.++|.+..+..... ......+..+....|+++.+...+.++-.
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLELQPNN---LKALMALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 45556666666666666666666554443211 33344444555555666666555555533
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.29 E-value=0.37 Score=41.89 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=62.6
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHh-cCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEM-GQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~-~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
++..+|..|...|++++|.++|.+........ ......+..+.... |+++.+...+.++..... ++. ......
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~-~~~~~~ 117 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALADPT--YPT-PYIANL 117 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTT--CSC-HHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcC--Ccc-hHHHHH
Confidence 56777888888888888888888776654322 33445566666777 888888887777766211 111 122334
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..+...|+|.+|...|-.+..
T Consensus 118 ~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 118 NKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667777888888777776654
No 69
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.28 E-value=0.046 Score=48.05 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=76.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCch-------------hHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSK-------------HIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTP 206 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~-------------~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~ 206 (441)
..+..+|..++..|+|++|.++|.+....+.... -...++..+..+.+..|+|..+..++.++-..-
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4567899999999999999999999877654322 013566777888899999999999999987652
Q ss_pred ccCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 207 EALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 207 ~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
. .+ .......|.++...|+|.+|...|-.+..
T Consensus 119 p-~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 K-NN----VKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp T-TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred c-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 12 23345568888999999999999888764
No 70
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.26 E-value=0.087 Score=47.47 Aligned_cols=107 Identities=15% Similarity=-0.001 Sum_probs=72.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH------------------hcCHHHHHhHHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE------------------MGQFTHVTSYVSK 201 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~------------------~~~~~~~~~~~~k 201 (441)
.+++.+|..|++.|++++|.+.|.++.....+....-+..+.+..+... .|++..+...+.+
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 5789999999999999999999999977765544433333333333222 4688888888888
Q ss_pred Hhcc-cccC-Chhhhhh----------HHHHHHHHhcccccHHHHHHHHHhcCcCCC
Q 013559 202 AEQT-PEAL-EPVTIAK----------LRCAAGLAHLEARKYKLAARKFLEVGPDLG 246 (441)
Q Consensus 202 a~~~-~~~~-d~~~~~~----------l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~~ 246 (441)
+-.. ++.. -|....+ .....|.+++..|+|..|...|-.+...++
T Consensus 122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 7654 3321 1221111 113457788899999999999988876544
No 71
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.26 E-value=0.066 Score=44.49 Aligned_cols=98 Identities=15% Similarity=0.070 Sum_probs=75.8
Q ss_pred HHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhH
Q 013559 138 IRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKL 217 (441)
Q Consensus 138 ir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l 217 (441)
-..+++.+|..++..|++++|.+.|.++....... ....+.+..+....|+|+.+...+.++-..-. .++. .
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~----~ 88 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPR----F 88 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTH----H
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcH----H
Confidence 34577899999999999999999999987664322 45566777788899999999999999876522 2332 3
Q ss_pred HHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 218 RCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 218 ~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
....|.++...|+|.+|...|-.+..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35578889999999999998877653
No 72
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.21 E-value=0.033 Score=52.49 Aligned_cols=103 Identities=7% Similarity=-0.090 Sum_probs=79.7
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc--cCChhhhh
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE--ALEPVTIA 215 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~--~~d~~~~~ 215 (441)
.+..+|.++...|++++|.++|.+..+... .....+.+..++..+....|+++.+..+..++-.... ..++....
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 455689999999999999999999876432 2223455667777788889999999999999976544 23555555
Q ss_pred hHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 216 KLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 216 ~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.+..--|.++...|+|.+|...|-.+..
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5666778889999999999999887754
No 73
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.19 E-value=0.38 Score=45.43 Aligned_cols=167 Identities=8% Similarity=0.019 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHhHH
Q 013559 66 QLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDF 145 (441)
Q Consensus 66 ~~~a~~~~~~~lk~t~~~~~Y~~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~Le~el~~~~~n~~~esir~~~~~l 145 (441)
...++...........+.+-....++.+-.. +..|-++.+. -.....-....+.+.-++.++. ..-..++..+
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~--~~~P~~~~~~-~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l 136 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSR--SVDVTNTTFL-LMAASIYFYDQNPDAALRTLHQ----GDSLECMAMT 136 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS--CCCCSCHHHH-HHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc--ccCCCCHHHH-HHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHH
Confidence 4566666666666666665555555543210 0012233322 2222333333344444444433 1112477889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHHHHHHh
Q 013559 146 GDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAGLAH 225 (441)
Q Consensus 146 a~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~~gl~~ 225 (441)
|..|.+.|++++|.+.|.++....... ....+...++.+....|++..+...+.++-.. ...++ .+....|.++
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~----~~~~~la~~~ 210 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQDEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTL----LLLNGQAACH 210 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCH----HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcH----HHHHHHHHHH
Confidence 999999999999999999987664221 12333344555555557888888888887654 11233 2334567788
Q ss_pred cccccHHHHHHHHHhcCcCC
Q 013559 226 LEARKYKLAARKFLEVGPDL 245 (441)
Q Consensus 226 l~~r~y~~Aa~~Fl~~~~t~ 245 (441)
+..|+|.+|...|..+....
T Consensus 211 ~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887543
No 74
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.14 E-value=0.39 Score=42.47 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=59.6
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
++..+|..+...|++++|.++|.+..+.... .......+..+....|+++.+...+.++..... .++ .....
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~ 130 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENG----DLFYM 130 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSH----HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCH----HHHHH
Confidence 5566777777777777777777776555322 234455566666777777777777777655322 111 12334
Q ss_pred HHHHhcccccHHHHHHHHHhcCc
Q 013559 221 AGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.|..++..|+|.+|...|-.+..
T Consensus 131 ~a~~~~~~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 131 LGTVLVKLEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55666677777777777766653
No 75
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.11 E-value=0.082 Score=41.65 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=70.0
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
+++.+|..++..|++++|.+.+.++....... ...+..+..+....|+++.+...+.++..... .++ .....
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSA----EAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH----HHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-Cch----HHHHH
Confidence 56788999999999999999999986654322 34556667777888999999999888765422 122 22234
Q ss_pred HHHHhcccccHHHHHHHHHhcCc
Q 013559 221 AGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.|..+...|+|.+|...|-.+..
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 56677889999999888877654
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.10 E-value=0.48 Score=45.53 Aligned_cols=107 Identities=11% Similarity=0.001 Sum_probs=77.8
Q ss_pred HHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcC--chhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCCh-hh
Q 013559 138 IRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTT--SKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEP-VT 213 (441)
Q Consensus 138 ir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~--~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~-~~ 213 (441)
...++..+|..++..|++++|.+++.+..+.+.. +...........++....|+++.+...+.++..... .+.+ ..
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 4457788999999999999999999998776642 223456667788889999999999999999877643 2221 11
Q ss_pred hhhHHHHHHHHhcccccHHHHHHHHHhcCcC
Q 013559 214 IAKLRCAAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 214 ~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
........+..++..|++.+|...+-.+...
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 1111123344567899999999999887653
No 77
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.09 E-value=0.059 Score=47.40 Aligned_cols=103 Identities=8% Similarity=0.025 Sum_probs=78.6
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccccc-C---------
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEA-L--------- 209 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~-~--------- 209 (441)
.+++.+|..|+..|++++|.++|.+....... ....+.....+....|+++.+...+.++-..... .
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 47889999999999999999999998766432 2456677788889999999999999998775331 1
Q ss_pred -ChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCcCC
Q 013559 210 -EPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDL 245 (441)
Q Consensus 210 -d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~ 245 (441)
...........-|..+...|+|.+|...|-.+....
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 001122445567888899999999999998876543
No 78
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.07 E-value=0.74 Score=41.09 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=76.1
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
..+++.+|..+...|++++|.++|.++.+..... ......+..+....|+++.+...+.++-.... .++ ...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~----~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---ADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNA----RVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcH----HHH
Confidence 3578999999999999999999999987765332 45667777788899999999999998866422 122 233
Q ss_pred HHHHHHhcccccHHHHHHHHHhcCc
Q 013559 219 CAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
...|..+...|+|.+|...|-.+..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4456778889999999999998876
No 79
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.04 E-value=0.092 Score=40.97 Aligned_cols=96 Identities=15% Similarity=0.217 Sum_probs=73.3
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.+|..+...|++++|.++|.+........ ...++.+..+....|+++.+...+.++-.... .++ ....
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~ 81 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNA----EAWY 81 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccH----HHHH
Confidence 467889999999999999999999987664322 45667777888889999999999988865421 122 2234
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.-|..+...++|.+|...|-.+..
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456777889999999999887754
No 80
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.98 E-value=0.98 Score=42.12 Aligned_cols=102 Identities=11% Similarity=0.089 Sum_probs=74.2
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccccc--CChhhhhhH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEA--LEPVTIAKL 217 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~--~d~~~~~~l 217 (441)
.+++.+|..++..|++++|.+.|.++....... ......+..+....|+++.+...+.++-..... .++.....+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 38 IAYYRRATVFLAMGKSKAALPDLTKVIALKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---chHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence 478899999999999999999999987664322 356677788888899999999999988664220 122211111
Q ss_pred --------HHHHHHHhcccccHHHHHHHHHhcCcC
Q 013559 218 --------RCAAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 218 --------~~~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
....|..+...|+|.+|...|-.+...
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 122367788899999999999887653
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.92 E-value=0.22 Score=48.23 Aligned_cols=179 Identities=11% Similarity=0.034 Sum_probs=112.1
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChh-hhhhHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPV-TIAKLRC 219 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~-~~~~l~~ 219 (441)
++.-+|..+...|++++|++++.+..+...+ ...++.....+++.+..|+.+.|.+.+.+.....+...|. -...+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEA-EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 4468999999999999999999987554321 3579999999999999999999999999987764200021 2234556
Q ss_pred HHHHHhcccc--cHHHHHHHHHhcCcCCCCCchhhhcHHHHHHHHHHHHHhcCChHHHHH---hccc-CHhhHh--h-hc
Q 013559 220 AAGLAHLEAR--KYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKS---KVID-NVNFRN--F-LE 290 (441)
Q Consensus 220 ~~gl~~l~~r--~y~~Aa~~Fl~~~~t~~~~~~el~s~~d~~~Y~~l~al~s~~R~eLk~---~vl~-~~~~~~--~-le 290 (441)
.+|.+.+..| ++..|...|-+....++++.+- ...|. |.+...+-.+... +++. .|++.. + -.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~------~lLln--~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPTWKTQ------LGLLN--LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH------HHHHH--HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH------HHHHH--HHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 6777777767 9999998888876665431011 11232 4444333222211 1111 011100 0 01
Q ss_pred cchH-HHHHHHHHhc-CCHHHHHHHHHHhHHhhhhchhHHHH
Q 013559 291 LVPE-VRELINDFYS-SRYASCLDYLGNLKANLLLDIHLHDH 330 (441)
Q Consensus 291 ~~p~-~~~ll~~f~~-~~y~~~~~~L~~~~~~l~~D~~L~~h 330 (441)
..|. +..+|.+.+. ++ ...+.+.+....-..++++..+
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 2455 4577776653 44 5566777777777788888764
No 82
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.91 E-value=0.58 Score=43.71 Aligned_cols=100 Identities=11% Similarity=0.105 Sum_probs=70.9
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHH------------HHHHHHHHHhcCHHHHHhHHHHHhcccc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMC------------MSAILVSIEMGQFTHVTSYVSKAEQTPE 207 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~------------l~~i~~~i~~~~~~~~~~~~~ka~~~~~ 207 (441)
.++..+|..+...|++++|.++|.+......+.+...+.. +....+....|++..+...+.++-....
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 5788999999999999999999998866544111222222 2225677888999999998888765422
Q ss_pred cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCcC
Q 013559 208 ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 208 ~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
.++ ......|..++..|+|.+|...|-.+...
T Consensus 152 -~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 183 (359)
T 3ieg_A 152 -WDA----ELRELRAECFIKEGEPRKAISDLKAASKL 183 (359)
T ss_dssp -TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -Cch----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 122 23455677788899999999988887654
No 83
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.90 E-value=0.04 Score=51.99 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=75.5
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.+|..++..|++++|.++|.+........ .........+....|+|+.+...+.++-..-- .++ ....
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~----~~~~ 76 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDG-QSV----KAHF 76 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCH----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCH----HHHH
Confidence 367889999999999999999999987764332 45666777888899999999999999876521 222 3344
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..+...|+|.+|...|..+..
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568888999999999999987653
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.83 E-value=0.67 Score=44.46 Aligned_cols=106 Identities=6% Similarity=-0.040 Sum_probs=77.7
Q ss_pred HHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---Cc--hhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCC
Q 013559 137 SIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TS--KHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALE 210 (441)
Q Consensus 137 sir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~--~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d 210 (441)
....++..+|..+...|++++|.+.|.+...... .+ .........+..+....|+++.+...+.++-.... .++
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 3345688999999999999999999999866542 11 22344455566778899999999999999877554 233
Q ss_pred hhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 211 PVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 211 ~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
+. .......-|..+...|+|.+|...|-.+..
T Consensus 171 ~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 171 QQ-QLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp GG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 333444567788899999999998877653
No 85
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.83 E-value=0.81 Score=39.58 Aligned_cols=96 Identities=6% Similarity=-0.137 Sum_probs=74.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.+|..++..|++++|.++|.+........ .+....+..+....|+++.+...+.++-.... .++ ....
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~----~~~~ 80 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSA----EINN 80 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCh----HHHH
Confidence 477899999999999999999999987765432 44566677778889999999999998866432 121 2334
Q ss_pred HHHHHhccc-ccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEA-RKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~-r~y~~Aa~~Fl~~~~ 243 (441)
..|..+... |+|.+|...|-.+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 457778889 999999999988876
No 86
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.80 E-value=0.062 Score=48.95 Aligned_cols=98 Identities=13% Similarity=-0.014 Sum_probs=46.6
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
++..+|..|+..|++++|.+++.+..+....+......+..+..+....|+++.+...+.++-..-.. ++ .....
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~----~~~~~ 113 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RL----DMYGQ 113 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CT----HHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cH----HHHHH
Confidence 44555555555555555555555554422222222333444445555555555555555555442110 11 12223
Q ss_pred HHHHhcccccHHHHHHHHHhcCc
Q 013559 221 AGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-|..+...|+|.+|...|-.+..
T Consensus 114 l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 114 IGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHccCHHHHHHHHHHHhh
Confidence 34445555555555555555543
No 87
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.79 E-value=0.088 Score=51.10 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=79.1
Q ss_pred HHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCch------------hHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 138 IRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSK------------HIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 138 ir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~------------~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
...++..+|..|+..|++++|.++|.+......... .....+.++..+.+..|+|..+...+.++-..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345788999999999999999999999877654331 12567788888899999999999999998765
Q ss_pred cccCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 206 PEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 206 ~~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-. .+ .......|.+++..|+|.+|...|-.+..
T Consensus 226 ~p-~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 226 DS-NN----EKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp CT-TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-Cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 12 23335568888999999999999988764
No 88
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.77 E-value=1.1 Score=42.43 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=15.5
Q ss_pred HHHHHHhcccccHHHHHHHHHhcCc
Q 013559 219 CAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..-|..+...|+|.+|...|-.+..
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345566667777777776666543
No 89
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.75 E-value=0.17 Score=44.20 Aligned_cols=103 Identities=16% Similarity=-0.000 Sum_probs=76.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCc------hh---HHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc---
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTS------KH---IIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE--- 207 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~------~~---~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~--- 207 (441)
..+..+|..+++.|+|++|+++|.+..++..+. .+ ....+.+...+....|+|+.+....+++-.+++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 467889999999999999999999998877551 11 123566677777889999999999999977622
Q ss_pred cCChhhhhhHH----HHHHHHhcccccHHHHHHHHHhcCc
Q 013559 208 ALEPVTIAKLR----CAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 208 ~~d~~~~~~l~----~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..+|+ ..+.. .-.|..+...|+|.+|...|-.+..
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01221 11222 3468889999999999999987753
No 90
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.63 E-value=0.1 Score=52.96 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=78.9
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCc------------hhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccc
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTS------------KHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTP 206 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~------------~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~ 206 (441)
-.++..+|..+++.|+|.+|.++|.+........ ......+.++..+.+..|+|..|..++.++-.+-
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3577889999999999999999999987765433 1235677788888999999999999999987653
Q ss_pred ccCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 207 EALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 207 ~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.. + .+.....|.+++..++|.+|...|-.+..
T Consensus 348 p~-~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 348 SA-N----EKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp TT-C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Cc-c----HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 21 2 23344568888999999999999988764
No 91
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.60 E-value=0.23 Score=48.79 Aligned_cols=185 Identities=11% Similarity=0.105 Sum_probs=112.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhh---
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAK--- 216 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~--- 216 (441)
.++..+|..|...|++++|.++|.++....... ......+..+....|+++.+...+.++..... .++.....
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~ 253 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQ 253 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHH
Confidence 478899999999999999999999987765332 45667778888899999999999999875422 12221111
Q ss_pred -----HHHHHHHHhcccccHHHHHHHHHhcCcCCCCCchhhhcHHHHHHHHHHHHHhc-CCh-HHHHHhcccCHhhHhhh
Q 013559 217 -----LRCAAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALAS-FDR-AELKSKVIDNVNFRNFL 289 (441)
Q Consensus 217 -----l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~~~~~~el~s~~d~~~Y~~l~al~s-~~R-~eLk~~vl~~~~~~~~l 289 (441)
-....|..+...|+|.+|...|-.+....++ .+.... ..|..++.+.. ..+ .+-.. . +...+
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~-~-----~~~a~ 322 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTV----RSKERICHCFSKDEKPVEAIR-V-----CSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHH----HHHHHHHHHHHTTTCHHHHHH-H-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHH----HHHHHHHHHHHHCCCHHHHHH-H-----HHHHH
Confidence 1234577788899999999999887653333 222210 01222222222 222 11111 1 22222
Q ss_pred ccch---H-HHHHHHHHh-cCCHHHHHHHHHHhHHhhhhchhHHHHHHHHHHHHH
Q 013559 290 ELVP---E-VRELINDFY-SSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIR 339 (441)
Q Consensus 290 e~~p---~-~~~ll~~f~-~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~iR 339 (441)
+..| . +..+..++. ..+|......+......-..|.-...++..+....+
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 2222 2 345555554 578998888887776555555555555555444443
No 92
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.53 E-value=0.11 Score=51.36 Aligned_cols=99 Identities=10% Similarity=0.145 Sum_probs=76.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc-------------CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCT-------------TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTP 206 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~-------------~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~ 206 (441)
..+..+|..+++.|+|++|.++|.+....+. ........+.++..+.+..|+|+.+..++.++-..-
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3578899999999999999999999866432 123345677788888899999999999999987752
Q ss_pred ccCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 207 EALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 207 ~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
- .+ .+.....|.++...++|.+|...|-.+..
T Consensus 304 p-~~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 P-SN----TKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp T-TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-hh----HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1 12 23345567888899999999999888764
No 93
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.53 E-value=0.13 Score=49.28 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=97.3
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
+....+|..+.+.|+|++|.+.|..... ..+++. ..+....+++..++|..+...+.++.... ++...+...+
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~~a~~ 175 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPV--AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAGAAGV 175 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHHHHHH
Confidence 3456789999999999999999987644 234544 56666678999999999999987554432 4555566788
Q ss_pred HHHHHhcccccHHHHHHHHHhcCcCCCCCchhhhcHHHHHHHHHHHHHhcCChHHHHHhcccCHhhHhhhccchHHHHHH
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGPDLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRELI 299 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~t~~~~~~el~s~~d~~~Y~~l~al~s~~R~eLk~~vl~~~~~~~~le~~p~~~~ll 299 (441)
+-|.++-..|+|.+|...|-.+...... +. ...+...|.++|-...-+-.+-.. -|++.+...|. ...-
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~--P~--~~~da~~~~glaL~~lGr~deA~~------~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAG--EA--CARAIAWYLAMARRSQGNESAAVA------LLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTT--TT--THHHHHHHHHHHHHHHTCHHHHHH------HHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCC--cc--ccHHHHHHHHHHHHHcCCHHHHHH------HHHHHHhcCCc-HHHH
Confidence 8999999999999999999988632110 11 133444666655444433222211 13344445555 4444
Q ss_pred HHHhcCCH
Q 013559 300 NDFYSSRY 307 (441)
Q Consensus 300 ~~f~~~~y 307 (441)
.++.+..|
T Consensus 245 ~aL~~~~~ 252 (282)
T 4f3v_A 245 AALKDPSY 252 (282)
T ss_dssp HHHHCTTC
T ss_pred HHHhCCCC
Confidence 44444443
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.51 E-value=0.16 Score=39.84 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=70.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..+...|++++|.+++.+........ ......+..+....|+++.+...+.++..... .++ ....
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~ 107 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSA----EAWY 107 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCH----HHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCh----HHHH
Confidence 366788999999999999999999987664332 34556667778889999999999888765422 122 2223
Q ss_pred HHHHHhcccccHHHHHHHHHhcC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
.-|..+...|++.+|...|-.+.
T Consensus 108 ~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 108 NLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHH
Confidence 45667788999999988887664
No 95
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.49 E-value=0.068 Score=42.81 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=56.2
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+++.+|..|+..|++++|.++|.++.....+.....+..+.+..+....|+++.+...+.++-..
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 477899999999999999999999998776655555677778888889999999999999988654
No 96
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.066 Score=53.36 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=70.7
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc------CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc----cC
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCT------TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE----AL 209 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~------~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~----~~ 209 (441)
..+..||..|+..|++++|+++|.+..+... .....+....++..+....|+++.+..++.|+..+.. ..
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 3567899999999999999999998755431 1112234445566677889999999999999876532 11
Q ss_pred ChhhhhhHHHHHHH--HhcccccHHHHHHHHHhcCc
Q 013559 210 EPVTIAKLRCAAGL--AHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 210 d~~~~~~l~~~~gl--~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
++. ...+....|. ..+..++|.+|...|-.+..
T Consensus 132 ~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 132 RIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp CCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred chh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 111 2233344454 44567789999999987654
No 97
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.46 E-value=0.4 Score=47.05 Aligned_cols=104 Identities=12% Similarity=-0.019 Sum_probs=78.8
Q ss_pred hhHHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChh
Q 013559 133 LIKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPV 212 (441)
Q Consensus 133 ~~~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~ 212 (441)
++.......++.+|..++..|++++|.++|.++.+.... .......+..+....|+++.+...+.++-.... .++
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~- 211 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW---DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNT- 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCH-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH-
Confidence 333444567889999999999999999999998776533 245667778888999999999999998865421 122
Q ss_pred hhhhHHHHHHHHhcccccHHHHHHHHHhcCcC
Q 013559 213 TIAKLRCAAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 213 ~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
.....-|..+...|+|.+|...|-.+...
T Consensus 212 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 212 ---EAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23345677888899999999999887643
No 98
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.45 E-value=0.91 Score=37.72 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=71.0
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..+...|++++|.+++.++....... ......+..+....|+++.+...+.++-.... .+ .....
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~ 148 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NE----GKVHR 148 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC----HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cc----hHHHH
Confidence 467888999999999999999999887664332 34566677778888999999998888765422 12 12334
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.-|..+...|+|.+|...|-.+..
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556677888999999888876643
No 99
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.41 E-value=0.42 Score=45.63 Aligned_cols=95 Identities=8% Similarity=-0.134 Sum_probs=75.0
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
.++.+|..++..|++++|.++|.++....... ...+..+..+....|+++.+...+.++-..-. .++ .....
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~----~~~~~ 138 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGD---AEAWQFLGITQAENENEQAAIVALQRCLELQP-NNL----KALMA 138 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCH----HHHHH
Confidence 57899999999999999999999997765432 55677788888999999999999999876421 121 23344
Q ss_pred HHHHhcccccHHHHHHHHHhcCc
Q 013559 221 AGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-|..+...|+|.+|...|-.+..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHH
Confidence 57778889999999999988754
No 100
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.39 E-value=0.13 Score=41.76 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=72.0
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
..+.+|..+.+.|++++|.++|.+........ .+..+.+..+....|++..+...+.++-..-- .++. ....
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~----~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIA----VHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH----HHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH----HHHH
Confidence 46788999999999999999999987664322 45566677778889999999999998866521 1222 3345
Q ss_pred HHHHhcccccHHHHHHHHHhcCc
Q 013559 221 AGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-|..+...|+|.+|...|-.+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 67788889999999998877654
No 101
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.36 E-value=0.15 Score=42.43 Aligned_cols=96 Identities=9% Similarity=0.060 Sum_probs=69.7
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..+...|++++|.+++.+........ ...++.+..+....|+++.+...+.++-.... .++... ...
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~--~~~ 121 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAK--MKY 121 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH--HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHH--HHH
Confidence 467899999999999999999999987765332 45667777788889999999999999876522 132221 122
Q ss_pred HHHHHhcccccHHHHHHHHHhc
Q 013559 220 AAGLAHLEARKYKLAARKFLEV 241 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~ 241 (441)
..+..++..|+|.+|...|-..
T Consensus 122 ~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 122 QECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccch
Confidence 2344466788999888877654
No 102
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.33 E-value=0.12 Score=44.17 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=73.2
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHH-HHHhcCH--HHHHhHHHHHhcccccCChhhhhh
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILV-SIEMGQF--THVTSYVSKAEQTPEALEPVTIAK 216 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~-~i~~~~~--~~~~~~~~ka~~~~~~~d~~~~~~ 216 (441)
.+++.+|..|...|++++|.++|.+........ .........+ ....|++ +.+...+.++-.... .++ .
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~----~ 116 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALALDS-NEI----T 116 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-TCH----H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-CcH----H
Confidence 478899999999999999999999987766433 3445555556 5677898 999998888766421 122 2
Q ss_pred HHHHHHHHhcccccHHHHHHHHHhcCcC
Q 013559 217 LRCAAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 217 l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
....-|..+...|+|.+|...|-.+...
T Consensus 117 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 117 ALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 3345677888999999999999887654
No 103
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.30 E-value=0.2 Score=41.89 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=69.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..+...|++++|.+++.+........ .........+....|+|+.+...+.++..... .++ ....
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~ 114 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INF----NVRF 114 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhH----HHHH
Confidence 356788899999999999999998887664322 34556667777888999999888888765422 121 2334
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..+...|+|.+|...|-.+..
T Consensus 115 ~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 115 RLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHh
Confidence 456677788899998888877654
No 104
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.27 E-value=1.8 Score=39.86 Aligned_cols=98 Identities=14% Similarity=-0.018 Sum_probs=70.4
Q ss_pred hHHhHHHHHHHHcC-CHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 140 MGYNDFGDFYYAHG-ALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 140 ~~~~~la~~~~~~G-d~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
.++..+|..+...| ++++|.++|.+........ ......+..+....|+++.+...+.++...... ++ ...
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~----~~~ 162 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY---GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CH----LPM 162 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC---THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CS----HHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cH----HHH
Confidence 36788899999999 8999999998886654322 344566777778889999998888887665321 11 122
Q ss_pred HHHHHHhcccccHHHHHHHHHhcCcCC
Q 013559 219 CAAGLAHLEARKYKLAARKFLEVGPDL 245 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~Fl~~~~t~ 245 (441)
..-|..+...|+|.+|...|-.+....
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 346777788899999888888876543
No 105
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.24 E-value=0.31 Score=43.09 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=74.5
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..+...|++++|.++|.++.+..... .+.......+.+..|+++.+...+.++-.... .++ ....
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~ 163 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDT----EARF 163 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCH----HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccH----HHHH
Confidence 467889999999999999999999987766433 34566777788899999999999998866432 122 2345
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..++..|+|.+|...|-.+..
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567778889999999998887764
No 106
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.20 E-value=0.31 Score=49.00 Aligned_cols=95 Identities=9% Similarity=0.163 Sum_probs=72.0
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..|...|++++|.+.|.+........ ......+..+....|+++.+...+.++..... .++. ...
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~ 382 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPE----VPT 382 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTH----HHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChH----HHH
Confidence 478899999999999999999999987765432 24566677778889999999999988866532 1222 234
Q ss_pred HHHHHhcccccHHHHHHHHHhcC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
.-|..+...|+|.+|...|-.+.
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 45788888999999988888764
No 107
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.093 Score=50.03 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=92.6
Q ss_pred HHHHHHHHhcccccHHHHHHHHHhcCc---CCCCCchhhhcHHHHHHHHHHHHHhcCChHHHHHhcccCHhhHhhhccch
Q 013559 217 LRCAAGLAHLEARKYKLAARKFLEVGP---DLGNSYNEVIAAQDVATYGGLCALASFDRAELKSKVIDNVNFRNFLELVP 293 (441)
Q Consensus 217 l~~~~gl~~l~~r~y~~Aa~~Fl~~~~---t~~~~~~el~s~~d~~~Y~~l~al~s~~R~eLk~~vl~~~~~~~~le~~p 293 (441)
+....+++.+..+|+.+--+++..... ......+.--.-..+.-|-.|.-|.+.+..++...+-.=+....-++..|
T Consensus 61 v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~ 140 (274)
T 4b4t_T 61 ILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDS 140 (274)
T ss_dssp CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcCh
Confidence 444566777778876654444433221 11000111011123434545666666666665442211011101123456
Q ss_pred HHH---HHHHHHhcCCHHHHHHHHHHhHHhhhhchhHHHHHHHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHH
Q 013559 294 EVR---ELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIE 370 (441)
Q Consensus 294 ~~~---~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E 370 (441)
.++ ++-.++.+++|..+++.+..... . -+..+-..+.|+..+|..+....+++|.+|+++.+++.|+.+. +
T Consensus 141 ~Ik~al~le~al~eGnY~kff~l~~~~~~-p--~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s---~ 214 (274)
T 4b4t_T 141 LLSYPIKLDRWLMEGSYQKAWDLLQSGSQ-N--ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNN---E 214 (274)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHHTCTT-C--CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCS---H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcCCC-C--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCC---H
Confidence 554 45567789999999987765311 0 1123345678899999999999999999999999999999964 2
Q ss_pred HHHHHHHHcCc
Q 013559 371 KELEALITDNQ 381 (441)
Q Consensus 371 ~~L~~LI~~g~ 381 (441)
+++.+++....
T Consensus 215 ~e~~~F~~~~g 225 (274)
T 4b4t_T 215 KETEKFALERN 225 (274)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 35666666554
No 108
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.12 E-value=1 Score=40.08 Aligned_cols=93 Identities=18% Similarity=0.020 Sum_probs=57.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..|...|++++|.++|.+..+.. . -.+..+....+....|+++.+...+.++-..- ..++. ...
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~----~~~ 189 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE-D---TPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLD----LRV 189 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHH----HHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH----HHH
Confidence 477889999999999999999999886664 2 24556677777888899999998888876542 11222 233
Q ss_pred HHHHHhcccccHHHHHHHHHhc
Q 013559 220 AAGLAHLEARKYKLAARKFLEV 241 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~ 241 (441)
.-|..+...|+|.+|...|-.+
T Consensus 190 ~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 190 RYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTC--------------
T ss_pred HHHHHHHHccCHHHHHHHHHHH
Confidence 4567788889999888777654
No 109
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.99 E-value=0.46 Score=40.47 Aligned_cols=96 Identities=14% Similarity=0.005 Sum_probs=72.2
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..|.+.|++++|.+.+.+........ .........+....+++..+...+.++..... .++. ...
T Consensus 40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~~~~----~~~ 111 (184)
T 3vtx_A 40 ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---AEAYYILGSANFMIDEKQAAIDALQRAIALNT-VYAD----AYY 111 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH----HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchH----HHH
Confidence 478899999999999999999999887665433 33444555667788999999998888866432 1222 234
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..+...|+|.+|...|-.+..
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 112 KLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchhHHHHHHHHHH
Confidence 568888899999999998887764
No 110
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.98 E-value=0.43 Score=51.70 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=64.2
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..||..|.+.|++++|.++|.+..+.... ..+...++..+....|+++.|...+.++-.+-- .++. ...
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~----a~~ 81 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFAD----AYS 81 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH----HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH----HHH
Confidence 56778888888888888888888887665432 144555666667777888888888777755421 1211 223
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.-|..+...|+|.+|...|-.+..
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677778888888887776653
No 111
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=94.92 E-value=0.47 Score=42.82 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=69.8
Q ss_pred HHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhH
Q 013559 138 IRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKL 217 (441)
Q Consensus 138 ir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l 217 (441)
.-.+++.+|..|+..|++++|.++|.+..+.... ..+....+..+....|+|+.+...+.++-..... ++ ..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~----~~ 113 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YN----YA 113 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CT----HH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-cc----HH
Confidence 3457788889999999999999988888766432 2345566667778888999888888887664221 11 23
Q ss_pred HHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 218 RCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 218 ~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
....|..++..|+|.+|...|-.+..
T Consensus 114 ~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 114 HLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34456677788888888888877754
No 112
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.88 E-value=1.8 Score=40.66 Aligned_cols=93 Identities=11% Similarity=0.111 Sum_probs=69.0
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.+|..+...|++++|.++|.+ + ...+.......+.+..|+++.+...+.++...-. +. . ....
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~-------~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p--~~-~--~~~l 168 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ-------G-DSLECMAMTVQILLKLDRLDLARKELKKMQDQDE--DA-T--LTQL 168 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT-------C-CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC-H--HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC-------C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--Cc-H--HHHH
Confidence 4688999999999999999999987 1 2356777888889999999999999999876521 11 1 1222
Q ss_pred HHHHHh--cccccHHHHHHHHHhcCcCC
Q 013559 220 AAGLAH--LEARKYKLAARKFLEVGPDL 245 (441)
Q Consensus 220 ~~gl~~--l~~r~y~~Aa~~Fl~~~~t~ 245 (441)
..|... ...|+|.+|...|-++....
T Consensus 169 ~~a~~~l~~~~~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 169 ATAWVSLAAGGEKLQDAYYIFQEMADKC 196 (291)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhC
Confidence 233322 35689999999998887543
No 113
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=94.81 E-value=0.091 Score=48.65 Aligned_cols=114 Identities=12% Similarity=0.139 Sum_probs=75.7
Q ss_pred HHHHHhcCChHHHHHh--cccCHhhHhhhccchHH---HHHHHHHhcCCHHHHHHHHHHhHHhhhhchhHHHHHHHHHHH
Q 013559 263 GLCALASFDRAELKSK--VIDNVNFRNFLELVPEV---RELINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQ 337 (441)
Q Consensus 263 ~l~al~s~~R~eLk~~--vl~~~~~~~~le~~p~~---~~ll~~f~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~ 337 (441)
.|.+|+.++-++.-.- ++. +.+ +..|.+ ..+-+.+.+|+|..|.+.+.. ++-+.+.+..|.+.
T Consensus 70 Llk~L~~~p~~DF~~~l~LIp-~~~----~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-------~~~l~~~i~gf~ds 137 (226)
T 1rz4_A 70 LLKALTNLPHTDFTLCKCMID-QAH----QEERPIRQILYLGDLLETCHFQAFWQALDE-------NMDLLEGITGFEDS 137 (226)
T ss_dssp HHHHHHTTTSTHHHHHHHTSC-HHH----HTSTTHHHHHHHHHHHHTTCHHHHHHHSCT-------TCHHHHTSTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCC-hhh----hcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-------ChhHHHHHhHHHHH
Confidence 4566666654444321 121 221 234444 556667789999999888754 23344555678888
Q ss_pred HHHHHHHHhccccccccHHhHHHHcC-CChHHHHHHHHHHHHcCccceEecCCCCeEEE
Q 013559 338 IRNKALIQYTHPFVSVDLHMMANAFK-TSVAGIEKELEALITDNQIQARIDSHNKILYA 395 (441)
Q Consensus 338 iR~~~i~qy~~pYs~I~L~~mA~~fg-~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~ 395 (441)
||..+..-.-..|++|+++.+++.+| ++.+++++++.+. .=++| .+|.|..
T Consensus 138 IR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~------GW~vd-~~g~I~~ 189 (226)
T 1rz4_A 138 VRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY------GWSAD-ESGQIFI 189 (226)
T ss_dssp HHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHH------TCEEC-C--CEEC
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHC------CCEEC-CCccEEe
Confidence 99888888888999999999999995 8998888888772 23555 4556644
No 114
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.69 E-value=1.8 Score=39.71 Aligned_cols=96 Identities=10% Similarity=-0.056 Sum_probs=73.3
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
.++.+|..++..|++++|.++|.++...... .......+..+....|+++.+...+.++..... .++ .....
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~----~~~~~ 94 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDI----AVHAA 94 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCH----HHHHH
Confidence 5688999999999999999999998766433 245556677788889999999999998876522 122 23344
Q ss_pred HHHHhcccccHHHHHHHHHhcCcC
Q 013559 221 AGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
.|..+...|+|.+|...|-.+...
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLS 118 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577788899999999998877643
No 115
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.69 E-value=0.2 Score=38.99 Aligned_cols=64 Identities=3% Similarity=-0.057 Sum_probs=52.9
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTP 206 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~ 206 (441)
.+++.+|..|+..|++++|.++|.++.+..... ...++.+..+....|+++.+...+.++-.+.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 478899999999999999999999987765432 3466677778889999999999999887653
No 116
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.67 E-value=0.19 Score=51.98 Aligned_cols=104 Identities=14% Similarity=0.048 Sum_probs=78.2
Q ss_pred HHHhHHhHHHHHHHHcCCHHHHHHHHHHHHh---hhcCc--hhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc---c
Q 013559 137 SIRMGYNDFGDFYYAHGALGDAFKSYVRTRD---YCTTS--KHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE---A 208 (441)
Q Consensus 137 sir~~~~~la~~~~~~Gd~~~A~~~~~~~r~---~~~~~--~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~---~ 208 (441)
++-..+..||..|...|+|++|..+|.+..+ ..-++ -.....+.++..+....|+|+.|...+.||-.+.+ |
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 5667899999999999999999999998633 33233 33566667777788889999999999999988765 3
Q ss_pred -CChhhhhhHHHHHHHHhcccccHHHHHHHHHhc
Q 013559 209 -LEPVTIAKLRCAAGLAHLEARKYKLAARKFLEV 241 (441)
Q Consensus 209 -~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~ 241 (441)
.+|... .+...-+-..+..|.|+.|-..|..+
T Consensus 429 ~~Hp~~~-~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 429 PSHPITK-DLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp TTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345433 34455566677788888887777655
No 117
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.59 E-value=2.1 Score=39.35 Aligned_cols=100 Identities=6% Similarity=-0.092 Sum_probs=67.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhH--
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKL-- 217 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l-- 217 (441)
.++..+|..+...|++++|.+++.++.+..... ......+..+....|++..+...+.++...... ++.....+
T Consensus 56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 131 (327)
T 3cv0_A 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQ 131 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhH
Confidence 467788999999999999999999987764322 455667777888899999999999888664221 11111000
Q ss_pred --------HHHHHH-HhcccccHHHHHHHHHhcCc
Q 013559 218 --------RCAAGL-AHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 218 --------~~~~gl-~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
....|. .+...|+|.+|...|-.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 011133 46778899999888887764
No 118
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.56 E-value=0.07 Score=42.68 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhc
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQ 204 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~ 204 (441)
+.-..+++.+|..|+..|++++|.++|.+..+..... .+..+.+..+....|+++.+...+.++-.
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444556666666666666666666666655443222 33444444555556666666665555543
No 119
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.27 Score=49.00 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=75.2
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.+|..+++.|++++|.++|.++..... . ......+..+.+..|+|+.+...+.++-..- ..++ ....
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~ 77 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKE--D--PVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYS----KVLL 77 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCH----HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc--c--HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHH----HHHH
Confidence 5788999999999999999999999977653 2 5567778888999999999999999886642 1121 2334
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..|..+...|+|.+|...|-.+..
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~ 101 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSL 101 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh
Confidence 567788899999999999887653
No 120
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.55 E-value=0.24 Score=39.43 Aligned_cols=90 Identities=10% Similarity=0.124 Sum_probs=66.6
Q ss_pred HcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHHHHHHhccccc
Q 013559 151 AHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAGLAHLEARK 230 (441)
Q Consensus 151 ~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~~gl~~l~~r~ 230 (441)
..|++++|.++|.+..+...+........+.+..+....|+|+.+...+.++-..-- .++. ....-|..+...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~----~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQA----LRVFYAMVLYNLGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH----HHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchH----HHHHHHHHHHHcCC
Confidence 469999999999998776433345567788888899999999999999999876532 2332 34557889999999
Q ss_pred HHHHHHHHHhcCcCC
Q 013559 231 YKLAARKFLEVGPDL 245 (441)
Q Consensus 231 y~~Aa~~Fl~~~~t~ 245 (441)
|.+|...|..+....
T Consensus 77 ~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 77 YEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887543
No 121
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=94.53 E-value=0.042 Score=42.12 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=38.7
Q ss_pred HHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCcc
Q 013559 341 KALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382 (441)
Q Consensus 341 ~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L 382 (441)
..|.+++.....|+++.||+.||+|++.+.+.|..|...|.|
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 456778888999999999999999999999999999999987
No 122
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.35 E-value=0.27 Score=45.66 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=54.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..+...|++++|.++|.+......... ...+.+..+....|+++.+...+.++-.... .++ ....
T Consensus 126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~----~~~~ 197 (330)
T 3hym_B 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH---LPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDP----FVMH 197 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCH----HHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CCh----HHHH
Confidence 3566777777777777777777777655543221 2233355556666777777777766655422 122 1223
Q ss_pred HHHHHhcccccHHHHHHHHHhcC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
.-|..+...|+|.+|...|-.+.
T Consensus 198 ~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 198 EVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 44556666677777666665544
No 123
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.29 E-value=3.1 Score=42.34 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=61.0
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
++..+|..|.++|++++|.++|.++.+.... ....+..++.+....|+++.+...+.++..... .+. .....
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~ 446 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQ---FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTH----LPYLF 446 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCS----HHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cch----HHHHH
Confidence 5667788888888888888888777654321 134455666667777888888877777654321 111 12233
Q ss_pred HHHHhcccccHHHHHHHHHhcCc
Q 013559 221 AGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-|..+...|++.+|...|-.+..
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566677888888888777653
No 124
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.23 E-value=0.88 Score=40.52 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=70.9
Q ss_pred hHHhHHHHHHHHc-----------CCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccccc
Q 013559 140 MGYNDFGDFYYAH-----------GALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEA 208 (441)
Q Consensus 140 ~~~~~la~~~~~~-----------Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~ 208 (441)
.++..+|..+... |++++|.+.|.+..+..... .+.......+....|+++.+...+.++-..-
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 148 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY---APLHLQRGLVYALLGERDKAEASLKQALALE-- 148 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--
Confidence 4778889999998 99999999998886654322 3455666677788899999999888886654
Q ss_pred CChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 209 LEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 209 ~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.++. ....-|..+...|+|.+|...|-.+..
T Consensus 149 ~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~ 179 (217)
T 2pl2_A 149 DTPE----IRSALAELYLSMGRLDEALAQYAKALE 179 (217)
T ss_dssp CCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2333 234567778889999999888887754
No 125
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.18 E-value=0.49 Score=41.92 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=42.5
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 142 YNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 142 ~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+.+|..|...|++++|.++|.+........ .+..+.+..+....|+++.+...+.++-.+
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3457888888888888888888776654321 455566666777778888888777777553
No 126
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.11 E-value=0.29 Score=36.19 Aligned_cols=63 Identities=16% Similarity=0.313 Sum_probs=50.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+++.+|..+...|++++|.++|.+........ ....+.+..+....|+++.+...+.++-..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 467899999999999999999999987765332 345666777788889999999888887654
No 127
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.03 E-value=0.13 Score=50.01 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=74.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCch------h--------HHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSK------H--------IIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~------~--------~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
..+..+|..+++.|+|.+|.++|.+......... . ....++++..+.+..|+|..+..++.++-..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3577899999999999999999999866543211 0 1135667777888899999999999998664
Q ss_pred cccCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 206 PEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 206 ~~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-. .+ .+.....|.+++..|+|.+|...|-.+..
T Consensus 260 ~p-~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 260 EE-KN----PKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp CT-TC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 12 23345568889999999999999998865
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.89 E-value=0.18 Score=44.18 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=72.2
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
.++.+|..++..|++++|.+.|.+..+ + ....+..+..+....|+|..+...+.++-..-. .++ .....
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~----~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~----~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD----P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLA----VAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS----C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC----C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cch----HHHHH
Confidence 578999999999999999999987732 1 235677777788899999999999998866521 122 23345
Q ss_pred HHHHhcccccHHHHHHHHHhcCcC
Q 013559 221 AGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
-|..+...|+|.+|...|-.+...
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHh
Confidence 678888999999999999887653
No 129
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=93.85 E-value=0.056 Score=42.29 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=39.5
Q ss_pred HHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 341 KALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 341 ~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
..|.+|+.....|+++.||+.||+|++.+.+.|..|...|.|.-
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R 48 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVR 48 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 45667788899999999999999999999999999999998853
No 130
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.74 E-value=2.7 Score=40.32 Aligned_cols=95 Identities=9% Similarity=-0.105 Sum_probs=54.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|.+++..|++++|...+......... ..+.+..+..+....|+++.+...+.++-..- ..++ ....
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~ 105 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFI----DGYI 105 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchH----HHHH
Confidence 35666777777777777777776665544321 23445555666666777777777766664431 1111 1122
Q ss_pred HHHHHhcccccHHHHHHHHHhcC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
.-|..+...|+|.+|...|-.+.
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666777777777766654
No 131
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.73 E-value=0.41 Score=45.46 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=71.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..|...|++++|.++|.+........ ......+..+....|+++.+...+.++-..-. .++ ....
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~----~~~~ 289 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYI----RSRY 289 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcH----HHHH
Confidence 467889999999999999999999887664332 34566777788889999999999888865421 121 2334
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.-|..+...|+|.+|...|-.+..
T Consensus 290 ~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 290 NLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567778889999999988877653
No 132
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.72 E-value=0.26 Score=39.00 Aligned_cols=65 Identities=6% Similarity=-0.021 Sum_probs=52.1
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcC----chhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTT----SKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~----~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
..+.+|.++++.|+|..|..+|......... .....++...+..+....|+++.+..+..++-..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3578999999999999999999998654321 2245677778888889999999999999888653
No 133
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=93.47 E-value=1.9 Score=42.63 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=70.9
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhh
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIA 215 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~ 215 (441)
+....++..+|..+...|++++|.++|.++...... ......+..+....|++..+...+.++-..... ++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~---- 304 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NS---- 304 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CT----
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CH----
Confidence 445568889999999999999999999988776533 666677777788888998888888887654321 11
Q ss_pred hHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 216 KLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 216 ~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
......|..+...|+|.+|...|-.+..
T Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 305 SVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1223445566677777777777776654
No 134
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.46 E-value=0.33 Score=48.81 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=71.6
Q ss_pred HHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhh
Q 013559 137 SIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAK 216 (441)
Q Consensus 137 sir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~ 216 (441)
+.-.+++.+|..+++.|++++|.++|.++....... ......+..+.+..|+|..+...+.++-..-. .++ .
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~----~ 94 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---PVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHS----K 94 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH----H
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chH----H
Confidence 344678999999999999999999999987765322 46677778888899999999999998866421 122 2
Q ss_pred HHHHHHHHhcccccHHHHHHHHH
Q 013559 217 LRCAAGLAHLEARKYKLAARKFL 239 (441)
Q Consensus 217 l~~~~gl~~l~~r~y~~Aa~~Fl 239 (441)
.....|..+...|+|.+|...|-
T Consensus 95 ~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 95 ALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 33456777888999999998883
No 135
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.39 E-value=0.44 Score=48.76 Aligned_cols=96 Identities=10% Similarity=0.171 Sum_probs=70.6
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..|.+.|++++|.+.|.++.+..... ......+..+....|+++.+...+.++..... .++.. ..
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~ 479 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLL----LN 479 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHH----HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH----HH
Confidence 478899999999999999999999987654322 34455666777888999999999988865422 23322 34
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.-|..+...|+|.+|...|-.+..
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677788999999888887643
No 136
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.24 E-value=0.44 Score=37.47 Aligned_cols=63 Identities=11% Similarity=-0.035 Sum_probs=50.9
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+++.+|..|...|++++|.++|.+........ ......+..+....|+++.+...+.++-..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478899999999999999999999987664332 445566777788889999999988887664
No 137
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=93.03 E-value=0.28 Score=38.48 Aligned_cols=66 Identities=6% Similarity=0.082 Sum_probs=52.9
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCc-h---hHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTS-K---HIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~-~---~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..|...|++++|.++|.+........ . ......+.+..+....|++..+...+.++-..
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 467899999999999999999999986654321 1 12566777788889999999999999988764
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.00 E-value=0.75 Score=37.36 Aligned_cols=77 Identities=10% Similarity=0.131 Sum_probs=55.9
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc----CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhh
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCT----TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIA 215 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~----~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~ 215 (441)
.++..+|..|++.|++++|.+.+.+..+... ........+..+..+....|+|..+.....++-... .+|+...
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~ 120 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVK 120 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHH
Confidence 4788999999999999999999999865432 222334456666777788999999999998875432 2555544
Q ss_pred hHH
Q 013559 216 KLR 218 (441)
Q Consensus 216 ~l~ 218 (441)
+++
T Consensus 121 ~l~ 123 (127)
T 4gcn_A 121 KVK 123 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 139
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=92.80 E-value=4.7 Score=38.54 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKA 202 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka 202 (441)
++..+|..|...|++++|.+.|.++...... ..+.+..+..+....|+++.+...+.++
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~a 229 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5556666666666666666666665443221 1233344444444455555555544444
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=92.79 E-value=0.22 Score=38.05 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=52.5
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHh-cCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEM-GQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~-~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..++..|++++|.++|.+....... .........+..+.... |+++.+...+.++-..
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 36789999999999999999999998776543 11255667777888889 9999999999887654
No 141
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.78 E-value=0.63 Score=50.35 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=66.2
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.||..|.+.|++++|.++|.+..+.... ..+.+.++..+....|+++.+...+.|+-.+-- .++. ...
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~----a~~ 115 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-AFAD----AHS 115 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH----HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH----HHH
Confidence 47788888888888888888888887665322 245666677777788888888888887765421 1211 223
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.-|..+...|+|.+|...|-.+..
T Consensus 116 ~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 116 NLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677778888888888877654
No 142
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=92.75 E-value=0.12 Score=39.43 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=38.3
Q ss_pred HHHHHHHhcccc------ccccHHhHHHHcCCChHHHHHHHHHHHHcCccc
Q 013559 339 RNKALIQYTHPF------VSVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 339 R~~~i~qy~~pY------s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ 383 (441)
|.+.|.+|++.+ -.++...||+.||+|...+.+.|..|-..|.|.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 445566666666 679999999999999999999999999999884
No 143
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.70 E-value=0.94 Score=40.01 Aligned_cols=96 Identities=11% Similarity=-0.041 Sum_probs=71.3
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHH----------------HHHHHHHhcCHHHHHhHHHHHhc
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMS----------------AILVSIEMGQFTHVTSYVSKAEQ 204 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~----------------~i~~~i~~~~~~~~~~~~~ka~~ 204 (441)
.++..|..+++.|++++|.++|.+....... ..+..+. +..+....|+++.+...+.++-.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999998665321 1233333 66777889999999999998866
Q ss_pred ccccCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCcC
Q 013559 205 TPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 205 ~~~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
.-- .++ .....-|..++..|+|.+|...|-.+...
T Consensus 83 ~~p-~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 83 KAP-NNV----DCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HCT-TCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 421 122 22344677889999999999999888653
No 144
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=92.61 E-value=0.69 Score=41.69 Aligned_cols=96 Identities=13% Similarity=-0.001 Sum_probs=69.9
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|..|...|++++|.++|.+........ ......+..+....|+++.+...+.++..... .++... .
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~----~ 149 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRS----L 149 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH----H
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CChHHH----H
Confidence 467889999999999999999999987765432 35667777788899999999999999876432 122111 1
Q ss_pred HHHHHhcccccHHHHHHHHHhcCcC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
..++. ...|++.+|...|-.+...
T Consensus 150 ~~~~~-~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 150 WLYLA-EQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHhcCHHHHHHHHHHHHhc
Confidence 22222 5568999999888776543
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.59 E-value=0.57 Score=37.30 Aligned_cols=63 Identities=8% Similarity=0.107 Sum_probs=52.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..|...|++++|.+.|.+........ ....+....+....|+++.+...+.++-..
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 578899999999999999999999987764332 456677777888999999999999988765
No 146
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.28 E-value=0.79 Score=47.31 Aligned_cols=97 Identities=10% Similarity=0.016 Sum_probs=64.8
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
-.++..+|..|...|++++|.++|.+..+..... .+....+..+....|+++.+...+.++-..-. .++. ..
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~----~~ 128 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPY----IT 128 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH----HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH----HH
Confidence 4577888888888888888888888876654322 44556666677778888888888877765421 1221 22
Q ss_pred HHHHHHhccc---ccHHHHHHHHHhcCc
Q 013559 219 CAAGLAHLEA---RKYKLAARKFLEVGP 243 (441)
Q Consensus 219 ~~~gl~~l~~---r~y~~Aa~~Fl~~~~ 243 (441)
..-|..+... +++.+|...|-.+..
T Consensus 129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 129 AQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 3345555666 888888887777654
No 147
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=92.21 E-value=0.66 Score=37.76 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=53.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..|...|++++|.+.|.+..+.... ....++.+..+....|+|+.+...+.++-.+
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999998776432 2456777788889999999999999998664
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.18 E-value=0.9 Score=36.54 Aligned_cols=64 Identities=3% Similarity=-0.073 Sum_probs=52.7
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
..++..+|..|...|++++|.+++.+........ ....+....+....|+++.+...+.++-..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3577889999999999999999999987664332 556677778888999999999999988764
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.13 E-value=0.61 Score=39.22 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=53.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+++.+|..|+..|++++|.++|.+........ ...++.+..+....|+++.+...+.++-..
T Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 46 IYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 478899999999999999999999987765332 556677788888999999999999998765
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=92.11 E-value=0.74 Score=35.83 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=52.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..+...|++++|.+++.+........ ....+.+..+....|+++.+...+.++...
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 467899999999999999999999987764332 456677777888999999999999988664
No 151
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.07 E-value=0.13 Score=43.31 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=66.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHHHHH
Q 013559 144 DFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAGL 223 (441)
Q Consensus 144 ~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~~gl 223 (441)
.||.++.+.|++++|++.+.+.... ....-...+.+.++....|+|+.+..++.++-..-. .++ .....-|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~----~a~~~lg~ 73 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDP----KAHRFLGL 73 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH----HHHHHHHH
Confidence 4788999999999999999876433 223344557788889999999999999999866521 132 23345678
Q ss_pred HhcccccHHHHHHHHHhcCc
Q 013559 224 AHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 224 ~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
++...|+|.+|...|-.+..
T Consensus 74 ~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHHH
Confidence 88999999999999988764
No 152
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.07 E-value=1 Score=41.00 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=63.3
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH----hcCHHHHHhHHHHHhcccccCChhhhh
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE----MGQFTHVTSYVSKAEQTPEALEPVTIA 215 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~----~~~~~~~~~~~~ka~~~~~~~d~~~~~ 215 (441)
.+++.+|..|+..|++++|.++|.+..+. ++ .+....+..+... .++++.+...+.++-..- ++.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~--- 75 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL----KE-NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN--- 75 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH---
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH---
Confidence 36778888888888888888888887652 11 2445555666666 788888888888875542 222
Q ss_pred hHHHHHHHHhcc----cccHHHHHHHHHhcCc
Q 013559 216 KLRCAAGLAHLE----ARKYKLAARKFLEVGP 243 (441)
Q Consensus 216 ~l~~~~gl~~l~----~r~y~~Aa~~Fl~~~~ 243 (441)
....-|..+.. .+++.+|...|-.+..
T Consensus 76 -a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 76 -GCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp -HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 22334566666 8888888888877653
No 153
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=91.59 E-value=0.24 Score=50.63 Aligned_cols=95 Identities=9% Similarity=0.041 Sum_probs=53.8
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
..++..+|..|.+.|++++|.++|.+..+.... .......+..+....|+++.|...+.++-..-. .++...
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~---- 111 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAK---- 111 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCTTHH----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHH----
Confidence 446777777788888888888777777655322 134455566666777778777777777655421 122222
Q ss_pred HHHHHH--hcccccHHHHHHHHHhc
Q 013559 219 CAAGLA--HLEARKYKLAARKFLEV 241 (441)
Q Consensus 219 ~~~gl~--~l~~r~y~~Aa~~Fl~~ 241 (441)
...|.. ++.+++|.+|...+-+.
T Consensus 112 ~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 112 MKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Confidence 122223 55667777777766543
No 154
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=91.57 E-value=1.1 Score=46.20 Aligned_cols=100 Identities=10% Similarity=0.005 Sum_probs=73.3
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhhh---cCch--hHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc----cCChhh
Q 013559 143 NDFGDFYYAHGALGDAFKSYVRTRDYC---TTSK--HIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE----ALEPVT 213 (441)
Q Consensus 143 ~~la~~~~~~Gd~~~A~~~~~~~r~~~---~~~~--~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~----~~d~~~ 213 (441)
.+.+.-+...|+|++|...|.+..+.. -++. ..+...-++..+....|+|+.|..+..++-...+ ..+|..
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 345566778999999999999874432 2333 3566777788888999999999999999876544 345654
Q ss_pred hhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 214 IAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 214 ~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-..+. --|..+..+|+|.+|..+|-.+..
T Consensus 393 a~~l~-nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 393 GMAVM-RAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33332 346677889999999998887754
No 155
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.53 E-value=0.63 Score=35.23 Aligned_cols=61 Identities=7% Similarity=-0.054 Sum_probs=48.8
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHH-HHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 142 YNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIH-MCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 142 ~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~-~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+..|..++..|++++|.+.|.++.+..... .. ..+.+..+....|+|+.+...+.++-..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4678999999999999999999987664332 23 5666677778899999999999988664
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.43 E-value=2.1 Score=41.71 Aligned_cols=104 Identities=5% Similarity=0.012 Sum_probs=79.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc-cCChhhhh
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCT---TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE-ALEPVTIA 215 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~~~~~ 215 (441)
....-+|.++...|+++.|.+++....+.+. .......+...+..+....|+|..+...+.++..... ..+.....
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 4556678888889999999999998766553 2233466777888889999999999999998866443 33444556
Q ss_pred hHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 216 KLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 216 ~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.+....|..++..|+|..|...+-.+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 6677788899999999999888776643
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=91.37 E-value=1.1 Score=34.12 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=51.7
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..+...|++++|.+++.+........ .........+....|++..+...+.++...
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 477899999999999999999999987765432 345666777788899999999999988664
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=91.35 E-value=1 Score=34.61 Aligned_cols=63 Identities=16% Similarity=0.313 Sum_probs=50.9
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..+...|++++|.+++.++....... ......+..+....|+++.+...+.++...
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 367889999999999999999999987664332 345567777888899999999999887654
No 159
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=91.24 E-value=0.82 Score=38.91 Aligned_cols=65 Identities=6% Similarity=-0.049 Sum_probs=54.3
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccc
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTP 206 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~ 206 (441)
..+++.+|..|...|++++|.++|.+........ .+..+++..+....|+++.+...+.++-..-
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3578999999999999999999999997765432 3456777788899999999999999987753
No 160
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=91.22 E-value=1.7 Score=41.71 Aligned_cols=91 Identities=9% Similarity=-0.007 Sum_probs=67.6
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
..++..+|..|.+.|++++|.++|.++.+..... ...++.+..+....|+++.+...+.++-.+-- .++. ..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~----a~ 267 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKA----AK 267 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHH----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHH----HH
Confidence 3578999999999999999999999997775432 45667778888999999999999999876522 1222 22
Q ss_pred HHHHHHhcccccHHHHHHH
Q 013559 219 CAAGLAHLEARKYKLAARK 237 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~ 237 (441)
..-|..+...+++.+|...
T Consensus 268 ~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345566667788777443
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=91.15 E-value=1.3 Score=36.29 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=51.9
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+++.+|..|...|++++|.++|.+........ ....+....+....|+++.+...+.++...
T Consensus 53 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 53 RYFLGLGACRQSLGLYEQALQSYSYGALMDINE---PRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999987765332 345567777888999999999999988664
No 162
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=90.85 E-value=0.52 Score=47.88 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=70.7
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHh---------cCHHHHHhHHHHHhcccccCC
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEM---------GQFTHVTSYVSKAEQTPEALE 210 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~---------~~~~~~~~~~~ka~~~~~~~d 210 (441)
.+++.+|..|+..|++++|.++|.+..+.... ......+..+.... |+|+.+...+.++-..-- .+
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~ 212 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LD 212 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CC
Confidence 48899999999999999999999999877533 25566666667777 999999999998866422 12
Q ss_pred hhhhhhHHHHHHHHhccc--------ccHHHHHHHHHhcCc
Q 013559 211 PVTIAKLRCAAGLAHLEA--------RKYKLAARKFLEVGP 243 (441)
Q Consensus 211 ~~~~~~l~~~~gl~~l~~--------r~y~~Aa~~Fl~~~~ 243 (441)
+. ....-|..++.. ++|.+|...|-.+..
T Consensus 213 ~~----~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 213 GR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 22 223345555555 889999988887764
No 163
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.82 E-value=1 Score=37.72 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=52.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+++.+|..|...|++++|.++|.+........ ....+.+..+....|+++.+...+.++-..
T Consensus 56 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 56 RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---PRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999987664322 345667777889999999999999998664
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.80 E-value=0.89 Score=36.34 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=52.4
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..+...|++++|.++|.+....... .....+.+..+....|++..+...+.++-..
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 47889999999999999999999998776533 2456677777888999999999999888664
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=90.65 E-value=0.87 Score=36.65 Aligned_cols=62 Identities=8% Similarity=-0.052 Sum_probs=51.3
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQ 204 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~ 204 (441)
.+++.+|..+...|++++|.++|.+..+...+. .+..+.+..+....|+++.+...+.++-.
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478999999999999999999999987765432 44666777788889999999998888754
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=90.46 E-value=2.2 Score=43.04 Aligned_cols=94 Identities=9% Similarity=0.047 Sum_probs=68.7
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
..+++.+|..|++.|+|++|.++|.++.+.... ....++....+....|+|..|..++.++-.+-- .+.. ..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~----a~ 388 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKA----AR 388 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----C----HH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHH----HH
Confidence 458899999999999999999999999776533 256677888888999999999999999877532 1211 22
Q ss_pred HHHHHHhcccccHHHHHHHHHh
Q 013559 219 CAAGLAHLEARKYKLAARKFLE 240 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~Fl~ 240 (441)
..-|.++...+++.+|...++.
T Consensus 389 ~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667778777655443
No 167
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=90.38 E-value=1.5 Score=41.82 Aligned_cols=101 Identities=9% Similarity=-0.020 Sum_probs=76.3
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
+++.+|..+++.|++++|..+|....... .+...-++.+.+-.+....|++..+...+.++..... +|........+
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~--~P~~~~da~~~ 213 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPA--GEACARAIAWY 213 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT--TTTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC--CccccHHHHHH
Confidence 78999999999999999999997543322 2222234666667778889999999999999864321 24434445578
Q ss_pred HHHHhcccccHHHHHHHHHhcCcC
Q 013559 221 AGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
.|+.+...|+..+|...|-.+...
T Consensus 214 ~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 214 LAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999887653
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.38 E-value=2.1 Score=35.62 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=53.3
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..|...|++++|.+.+.++...... ....++....+....|+|+.+...+.++-.+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 47889999999999999999999998776432 2456777888889999999999999998765
No 169
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.20 E-value=0.85 Score=35.84 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=51.2
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..|...|++++|.+++.+....... .....+.+..+....|+++.+...+.++-..
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 46788999999999999999999998776433 2445667777888899999999999888664
No 170
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=90.04 E-value=1.7 Score=44.82 Aligned_cols=64 Identities=11% Similarity=0.001 Sum_probs=46.1
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHh---cCHHHHHhHHHHHhcc
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEM---GQFTHVTSYVSKAEQT 205 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~---~~~~~~~~~~~ka~~~ 205 (441)
..+++.+|..|.+.|++++|.++|.+..+...+. .+....+..+.... |+++.+...+.++-..
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 3578888888888888888888888876664332 34556666677777 7777777777776543
No 171
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=89.93 E-value=1.3 Score=39.22 Aligned_cols=91 Identities=10% Similarity=-0.018 Sum_probs=64.3
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhc----CHHHHHhHHHHHhcccccCChhhhh
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMG----QFTHVTSYVSKAEQTPEALEPVTIA 215 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~----~~~~~~~~~~ka~~~~~~~d~~~~~ 215 (441)
.+++.||.+|+..||+++|.++|.+.-+.- + .+.+..+-.+... + |+..+...+.++-. .+++...
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~-~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~---~g~~~a~- 88 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG----D-GDALALLAQLKIR-NPQQADYPQARQLAEKAVE---AGSKSGE- 88 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----C-HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH---TTCHHHH-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----C-HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH---CCCHHHH-
Confidence 478999999999999999999999986541 1 2333333333333 6 89999999888833 2344322
Q ss_pred hHHHHHHHHhcc----cccHHHHHHHHHhcCc
Q 013559 216 KLRCAAGLAHLE----ARKYKLAARKFLEVGP 243 (441)
Q Consensus 216 ~l~~~~gl~~l~----~r~y~~Aa~~Fl~~~~ 243 (441)
..-|.++.. .+++.+|..+|..+..
T Consensus 89 ---~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 89 ---IVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp ---HHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 234556665 7899999999998875
No 172
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.83 E-value=2.2 Score=38.77 Aligned_cols=92 Identities=20% Similarity=0.175 Sum_probs=69.0
Q ss_pred hHHhHHHHHHHH----cCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH----hcCHHHHHhHHHHHhcccccCCh
Q 013559 140 MGYNDFGDFYYA----HGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE----MGQFTHVTSYVSKAEQTPEALEP 211 (441)
Q Consensus 140 ~~~~~la~~~~~----~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~----~~~~~~~~~~~~ka~~~~~~~d~ 211 (441)
.+++.+|..|.. .|++++|.++|.+..+.. ..+.+..+..+... .++++.+...+.++-.. +++
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~~ 110 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---KYA 110 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---CCc
Confidence 477899999999 999999999999886652 24555666667777 89999999999888665 233
Q ss_pred hhhhhHHHHHHHHhcc----cccHHHHHHHHHhcCc
Q 013559 212 VTIAKLRCAAGLAHLE----ARKYKLAARKFLEVGP 243 (441)
Q Consensus 212 ~~~~~l~~~~gl~~l~----~r~y~~Aa~~Fl~~~~ 243 (441)
.. ...-|..+.. .+++.+|...|-.+..
T Consensus 111 ~a----~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 111 EG----CASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HH----HHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred cH----HHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 22 2334556666 8999999999887754
No 173
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=89.18 E-value=2.6 Score=42.47 Aligned_cols=101 Identities=11% Similarity=0.073 Sum_probs=73.0
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhh---c--CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc----cCCh
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYC---T--TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE----ALEP 211 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~---~--~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~----~~d~ 211 (441)
....+.+ +.+.|+|++|.+.|.+..+.. - ..-..+.+.-++..+....|+|+.|..+..|+-...+ ..+|
T Consensus 290 ll~~ie~-~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 290 SLKKIEE-LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHH-HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3334433 557899999999999986532 1 3334567777888888999999999999999877544 3466
Q ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 212 VTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 212 ~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..-..+. --|..+..+|+|.+|..+|-.+..
T Consensus 369 ~~a~~l~-nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVM-KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5443333 246678889999999998887754
No 174
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=89.18 E-value=0.91 Score=34.32 Aligned_cols=55 Identities=11% Similarity=0.194 Sum_probs=42.9
Q ss_pred HHHhccccc---cccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 343 LIQYTHPFV---SVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 343 i~qy~~pYs---~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
|..++..-. .++...||+.+|+|...+.+.|.+|..+|.|...-+ ..|.=....+
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~-~~~~W~i~~~ 76 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG-TPPLWKIAVS 76 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS-SSCEEEECCC
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC-CCCceEecCC
Confidence 445666566 899999999999999999999999999999966533 3355555443
No 175
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.77 E-value=2.4 Score=42.89 Aligned_cols=93 Identities=9% Similarity=0.030 Sum_probs=69.2
Q ss_pred HHcCCHHHHHHHHHHHHh---hhcCch--hHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc----cCChhhhhhHHHH
Q 013559 150 YAHGALGDAFKSYVRTRD---YCTTSK--HIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE----ALEPVTIAKLRCA 220 (441)
Q Consensus 150 ~~~Gd~~~A~~~~~~~r~---~~~~~~--~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~----~~d~~~~~~l~~~ 220 (441)
...|+|++|...|.+..+ ..-++. ..+...-++..+....|+|+.|..+..|+-...+ ..+|+.-..+. -
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~-n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL-K 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH-H
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH-H
Confidence 457999999999998744 332333 4566777788888999999999999999977654 34665544333 3
Q ss_pred HHHHhcccccHHHHHHHHHhcCc
Q 013559 221 AGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-|..+..+|+|.+|..+|-.+..
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 46778899999999998887754
No 176
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=88.75 E-value=1.1 Score=34.21 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=42.9
Q ss_pred HHHhccccc---cccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 343 LIQYTHPFV---SVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 343 i~qy~~pYs---~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
|..++.... .++...||+.||+|...+.+.|.+|..+|.|.- ++...|.=....+
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~-~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK-EAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ESSSSCEEEEC--
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-cCCCCCeeEEeCc
Confidence 445666666 899999999999999999999999999999943 4555566666544
No 177
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.61 E-value=4.5 Score=40.78 Aligned_cols=71 Identities=10% Similarity=-0.110 Sum_probs=57.5
Q ss_pred HHHhHHhHHHHHHHHcCCHHHHHHHHHHHH---hhhc--CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc
Q 013559 137 SIRMGYNDFGDFYYAHGALGDAFKSYVRTR---DYCT--TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE 207 (441)
Q Consensus 137 sir~~~~~la~~~~~~Gd~~~A~~~~~~~r---~~~~--~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~ 207 (441)
++-..+..||..|...|+|++|..+|.+.. +..- ..-.....+.++..+....|+|+.|...+.||-.+.+
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999999873 3332 3334556667777788899999999999999988765
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=88.34 E-value=3 Score=35.97 Aligned_cols=63 Identities=8% Similarity=0.053 Sum_probs=52.9
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.++..+|..|...|++++|.+++.+........ ...++.+..+....|+++.+...+.++-..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 477899999999999999999999987764322 456677788889999999999999998665
No 179
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=88.23 E-value=11 Score=37.00 Aligned_cols=96 Identities=2% Similarity=-0.118 Sum_probs=69.0
Q ss_pred hHHhHHHHHHHHcCC-HHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 140 MGYNDFGDFYYAHGA-LGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd-~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
.+++.+|..+...|+ +++|+++|.++....... ...+.+...+....|++..+...+.++-.+-- .+. ...
T Consensus 132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~---~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~----~a~ 203 (382)
T 2h6f_A 132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---YQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNY----HAW 203 (382)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCH----HHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCH----HHH
Confidence 478889999999996 999999999887664322 34555555666777899999988888866421 121 122
Q ss_pred HHHHHHhcccccHHHHHHHHHhcCc
Q 013559 219 CAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
...|.++...|+|.+|...|-.++.
T Consensus 204 ~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 204 QHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777778899998888887764
No 180
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=88.10 E-value=3.8 Score=38.32 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=69.0
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.++..+|.++...|++++|.++|.++......... .+......+....|+++.+...+.++-.... ..+. +
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~------~ 170 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHH------V 170 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTH------H
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHH------H
Confidence 47889999999999999999999998765332211 1555666667778999999999999876532 1222 2
Q ss_pred HHHHHhcc---cccHHHHHHHHHhcCcCC
Q 013559 220 AAGLAHLE---ARKYKLAARKFLEVGPDL 245 (441)
Q Consensus 220 ~~gl~~l~---~r~y~~Aa~~Fl~~~~t~ 245 (441)
+.+...+. .|++.+|...|-.+...+
T Consensus 171 ~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 171 YVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 23333332 699999999988776543
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=87.43 E-value=1.1 Score=43.27 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=52.0
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
+++.+|..|...|+|++|.++|.+....... ....++....+....|+|+.+...+.++-.+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999998776432 2456677778888999999999999998664
No 182
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.99 E-value=1.4 Score=46.89 Aligned_cols=94 Identities=13% Similarity=-0.033 Sum_probs=44.8
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
+++.+|..|+..|++++|.+.|.++.....+. .+..+.+..+....|+|+. ...+.++-..-- .++ .....
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~----~a~~~ 539 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVI----SAAFG 539 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCH----HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chH----HHHHH
Confidence 44444555555555555555554443332211 2222333333444444444 444444433210 011 12234
Q ss_pred HHHHhcccccHHHHHHHHHhcCc
Q 013559 221 AGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-|..++..|+|.+|...|-.+..
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHcCCHHHHHHHHHhhcc
Confidence 56677778888888888777764
No 183
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.67 E-value=17 Score=38.42 Aligned_cols=95 Identities=9% Similarity=-0.078 Sum_probs=71.6
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.+|..|.+.|++++|.+.|.++.+..... .+..+....+....|+++.|...+.++-..-- .++. ...
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~----~~~ 505 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELA----PKL 505 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSH----HHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChH----HHH
Confidence 578999999999999999999999987664332 45667777788899999999999999876422 1222 224
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.-|..+...|+|.+ ...|-.+..
T Consensus 506 ~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 506 ALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp HHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred HHHHHHHHcCChHH-HHHHHHHHH
Confidence 56777788888888 777766653
No 184
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.52 E-value=54 Score=38.28 Aligned_cols=102 Identities=11% Similarity=0.212 Sum_probs=65.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHHHH
Q 013559 143 NDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAG 222 (441)
Q Consensus 143 ~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~~g 222 (441)
-+.|..+.+.|.+++|+.+|.+...+ ...++.++. ..++|+.|.++..|+.. + .+...-|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~----~~A~~VLie------~i~nldrAiE~Aervn~------p----~vWsqLA 1112 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVN----TSAVQVLIE------HIGNLDRAYEFAERCNE------P----AVWSQLA 1112 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCH----HHHHHHHHH------HHhhHHHHHHHHHhcCC------H----HHHHHHH
Confidence 34799999999999999999986321 111222211 56789999888887632 1 2223457
Q ss_pred HHhcccccHHHHHHHHHhcCcCC-----CCCchhhhcHHHHHHHHHH
Q 013559 223 LAHLEARKYKLAARKFLEVGPDL-----GNSYNEVIAAQDVATYGGL 264 (441)
Q Consensus 223 l~~l~~r~y~~Aa~~Fl~~~~t~-----~~~~~el~s~~d~~~Y~~l 264 (441)
.+++..|+|++|...|..+-..- ...+...-.+++++.|+..
T Consensus 1113 KAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88889999999999998763210 0112333456666677643
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=86.45 E-value=6.7 Score=38.27 Aligned_cols=68 Identities=7% Similarity=-0.007 Sum_probs=56.1
Q ss_pred HHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 135 KESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 135 ~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
......++..+|..|++.|++++|.++|.++.+.... ....++....+....|+++.+...+.++..+
T Consensus 269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444568999999999999999999999999776432 2456677777888999999999999998765
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=86.26 E-value=1.4 Score=44.86 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=51.5
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
++..+|..+++.|++++|.++|.+..+..... ......+..+....|+|+.+...+.++-..-. .++ .....
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~----~~~~~ 79 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYI----KGYYR 79 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCH----HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCH----HHHHH
Confidence 45556666666666666666666665543221 34444555556666666666666666654411 111 12233
Q ss_pred HHHHhcccccHHHHHHHHHhcC
Q 013559 221 AGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
.|..+...|+|.+|...|-.+.
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al 101 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVV 101 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666665544
No 187
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.90 E-value=17 Score=36.09 Aligned_cols=102 Identities=10% Similarity=0.122 Sum_probs=66.3
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhc-----------------------CchhHHHHHHH----------------
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCT-----------------------TSKHIIHMCMS---------------- 181 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~-----------------------~~~~~~~~~l~---------------- 181 (441)
+.+.||++|.+.|++++-.+++...|.+.. +.+..+++|..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999998888876555432 11223333322
Q ss_pred ----HHHHHHHhcCHHHHHhHHHHHhcccc-cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcC
Q 013559 182 ----AILVSIEMGQFTHVTSYVSKAEQTPE-ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 182 ----~i~~~i~~~~~~~~~~~~~ka~~~~~-~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
++.+.+..|+|..+.+.+.++..-.. ..|......+......++...+|+..+-..+..+.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22334567788888777777766433 22445555566666777778888888777666654
No 188
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=85.54 E-value=2 Score=34.76 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
...+++.|+..+...-+.|=..+ +...||+.||+|...+-+-+..|..+|-|..+ ...|+.+..
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~~ 75 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEeC
Confidence 45678888888888888999999 99999999999999999999999999998543 556666554
No 189
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=85.28 E-value=1.1 Score=32.72 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=36.3
Q ss_pred HHHHHHHHhcccc-ccccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 338 IRNKALIQYTHPF-VSVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 338 iR~~~i~qy~~pY-s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
+|.+++. ++... ..++...||+.||+|...+.+.|..|..+|-|..
T Consensus 11 ~~~~IL~-~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 11 LEQKILQ-VLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHH-HHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-HHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4444444 33333 4699999999999999999999999999999754
No 190
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.23 E-value=2.7 Score=39.20 Aligned_cols=96 Identities=5% Similarity=-0.059 Sum_probs=68.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+++.+|..+.+.|++++|...|.+........ .+..+.+.++.+..|+++.+...+.++-..- .++. ....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~---~~~~ 189 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTR---YQGL 189 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHH---HHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchH---HHHH
Confidence 467899999999999999999999987765432 4667788889999999999998888764431 1211 1223
Q ss_pred HHHHHhcccccHHHHHHHHHhcCc
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
..++.+...+++..|...|..+..
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~ 213 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVA 213 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHh
Confidence 345555666677777666665543
No 191
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=83.94 E-value=3 Score=41.93 Aligned_cols=71 Identities=14% Similarity=-0.031 Sum_probs=57.6
Q ss_pred HHHhHHhHHHHHHHHcCCHHHHHHHHHHHHh---hh--cCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccc
Q 013559 137 SIRMGYNDFGDFYYAHGALGDAFKSYVRTRD---YC--TTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPE 207 (441)
Q Consensus 137 sir~~~~~la~~~~~~Gd~~~A~~~~~~~r~---~~--~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~ 207 (441)
.+-..+..+|..|...|+|++|.+++.++.+ .. ...-.....+.++..+....|+|+.|...+.||-.+.+
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999998733 32 23344566677888888999999999999999988766
No 192
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=83.79 E-value=2.2 Score=35.25 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
...+++.||..+...-+.|=..+ +...||+.||+|...+-+-+..|..+|-|.. -+..|+.+..
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 45788889988888888999999 9999999999999999999999999999854 3556776655
No 193
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=83.50 E-value=1.7 Score=34.73 Aligned_cols=57 Identities=11% Similarity=0.000 Sum_probs=47.1
Q ss_pred HHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 339 RNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 339 R~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
|..++ ..+.|-..+ +...||+.||+|...+-+-|..|..+|-|..+=....|+.+..
T Consensus 30 ~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 30 IEHIF-EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp HHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred HHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 77777 777888888 9999999999999999999999999999866432245766654
No 194
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=82.76 E-value=2.1 Score=42.21 Aligned_cols=103 Identities=6% Similarity=-0.156 Sum_probs=59.1
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHH-HHhcCHHHHHhHHHHHhcccc-cCChh-----h
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVS-IEMGQFTHVTSYVSKAEQTPE-ALEPV-----T 213 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~-i~~~~~~~~~~~~~ka~~~~~-~~d~~-----~ 213 (441)
++..+|..|...|++++|.++|.+.......+...-.+.+....+. ...|+++.+..+..++-.+-. ..++. +
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l 415 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 6778999999999999999999998766544444333333333333 346889999888888755421 11100 0
Q ss_pred -------------hhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 214 -------------IAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 214 -------------~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.......-|.++...|+|.+|.+.|-.+..
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 011223357777788888888888877764
No 195
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=82.55 E-value=3.5 Score=38.59 Aligned_cols=102 Identities=8% Similarity=-0.073 Sum_probs=69.5
Q ss_pred HHhHHHHHHHH-cCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 141 GYNDFGDFYYA-HGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 141 ~~~~la~~~~~-~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
.+...|.+.+. .|++++|.++|.+....+... .+++...+......|+++.+...+.++-.... .+|.-...+..
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-l~p~~~~~l~~ 245 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-LPPEKSGEIWA 245 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-SCGGGCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-CCHHHHHHHHH
Confidence 44555665444 699999999999997776542 46667777788888999999999999977521 01211122333
Q ss_pred HHHHHhcccccHHHHHHHHHhcCcCCC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVGPDLG 246 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~~t~~ 246 (441)
..+-+....|++..|...+-.+...++
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 344455667999888888777665443
No 196
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=82.42 E-value=2.9 Score=34.46 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
...+++.|+..+...-+.|=..+ +...||+.||+|...+-+-+..|..+|-|..+ ...|+.+..
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 45788889989888888999999 59999999999999999999999999988553 456776665
No 197
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=82.13 E-value=5.1 Score=33.55 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=51.8
Q ss_pred hHHhHHHHH-HHHcCCH--HHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccc
Q 013559 140 MGYNDFGDF-YYAHGAL--GDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTP 206 (441)
Q Consensus 140 ~~~~~la~~-~~~~Gd~--~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~ 206 (441)
.++..+|.. ++..|++ ++|.++|.+........ ....+.+..+....|++..+...+.++-...
T Consensus 79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE---ITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 367889999 8899999 99999999987764332 3556677788899999999999999987653
No 198
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=82.09 E-value=9 Score=29.44 Aligned_cols=64 Identities=9% Similarity=0.106 Sum_probs=45.3
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecC--CCCeEEEecCCchhHHHHHHHHHHhhH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDS--HNKILYARHADQRNATFQRVLQTGSEF 415 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~--~~gvv~~~~~d~r~~~~~~~i~~~~~~ 415 (441)
...++...+|+.+|++...+-+.|..|...|-|...-|. ..+.+... ......++.+....+.+
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t--~~g~~~~~~~~~~~~~~ 97 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSA--EKPEKVLKEFKSSILGE 97 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEE--CCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEec--CcHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999776553 33333333 23334455554443333
No 199
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=81.45 E-value=6.1 Score=38.87 Aligned_cols=98 Identities=8% Similarity=0.001 Sum_probs=72.2
Q ss_pred HHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcC-HHHHHhHHHHHhcccccCChhhhhh
Q 013559 138 IRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQ-FTHVTSYVSKAEQTPEALEPVTIAK 216 (441)
Q Consensus 138 ir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~-~~~~~~~~~ka~~~~~~~d~~~~~~ 216 (441)
-..++..+|..+...|++++|+++|.++....... ...+.....+....|+ +..+...+.++-..-- .++ .
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~---~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~----~ 167 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN---YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNY----Q 167 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCH----H
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC---HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCH----H
Confidence 34577889999999999999999999987765332 3445555566677785 9999999998866421 121 2
Q ss_pred HHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 217 LRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 217 l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.....|.++...|+|.+|...|-.++.
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334567777888999999988887764
No 200
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=81.11 E-value=3.3 Score=35.11 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=43.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKA 202 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka 202 (441)
.+++.+|..+...|++++|.++|.++.....+... ......+..+....|+++.+.....++
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-GEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 57889999999999999999999988665433211 234445556667778887777666554
No 201
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=80.91 E-value=3 Score=31.28 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=34.6
Q ss_pred HhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 345 QYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 345 qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
.++.....++...||+.||+|...+-+.|..|...|-|..
T Consensus 7 ~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 7 EFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3444446799999999999999999999999999999963
No 202
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=80.57 E-value=7.5 Score=32.72 Aligned_cols=98 Identities=5% Similarity=-0.101 Sum_probs=58.8
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHH
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLR 218 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~ 218 (441)
-.+++.+|..+...|++++|.++|.+...... .. .....+..+... ..++...+...+.++-..- ..++ ...
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~-~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~~-P~~~----~~~ 111 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN-SYKSLIAKLELH-QQAAESPELKRLEQELAAN-PDNF----ELA 111 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH-HHHHHHHHHHHH-HHHTSCHHHHHHHHHHHHS-TTCH----HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch-HHHHHHHHHHHH-hhcccchHHHHHHHHHHhC-CCCH----HHH
Confidence 35789999999999999999999988755433 11 122222222111 1112222344444443321 1222 233
Q ss_pred HHHHHHhcccccHHHHHHHHHhcCcC
Q 013559 219 CAAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
..-|..+...|+|.+|...|..+...
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 55678889999999999999887653
No 203
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=80.19 E-value=97 Score=36.21 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=44.9
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+..+|+.+++.|+|++|..+|.+. +.+..+.++.+..|++..|.+...||...
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 5678999999999999999999885 34456777778889999999999888543
No 204
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=79.97 E-value=3.5 Score=34.30 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
...+++.||..+...-+.|=..+ +...||+.||+|...+-+-+..|..+|-|..+ +..|+.+....
T Consensus 16 Y~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~~~ 82 (134)
T 4ham_A 16 YEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIANQT 82 (134)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCCS
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeCCc
Confidence 45788889999999999999999 89999999999999999999999999998654 55677776543
No 205
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=79.64 E-value=0.97 Score=35.75 Aligned_cols=65 Identities=9% Similarity=0.131 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEec
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARH 397 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~ 397 (441)
...+++.+|.+++...+.|-..+ +...||+.||+|...+-+.|..|...|-|..+ ...|+.+...
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~--~g~G~~v~~~ 78 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR--GALGTVVEKN 78 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE--TTTEEESCSC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCeEEEccC
Confidence 45678888888888777888888 99999999999999999999999999998543 3346555443
No 206
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=79.37 E-value=8.7 Score=33.15 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=51.7
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhh-------hcCchhHHHHH----HHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDY-------CTTSKHIIHMC----MSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~-------~~~~~~~~~~~----l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
++..+|..+.+.|+|++|+.+|.+..+. ..+ ....+ ++.-.+....|+++.+...+.|+-.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8899999999999999999999998776 332 23344 67777778899999999999999775
No 207
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=78.84 E-value=5.7 Score=36.83 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=49.7
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+++.+|..|...|++++|.+.|.+......+. ......+..+....|+|+.+...+.++-..
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 39 VYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 477889999999999999999999887654322 345566667778899999999988887653
No 208
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=78.81 E-value=4.1 Score=33.82 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
...+++.|+..++..-+.|=..+ +...||+.||+|...+-+-|..|..+|-|.. -+..|+.+..
T Consensus 6 ~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~~ 70 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVSA 70 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEec
Confidence 35678888888888888999999 9999999999999999999999999998854 4556766654
No 209
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=78.61 E-value=7.6 Score=34.11 Aligned_cols=94 Identities=10% Similarity=-0.004 Sum_probs=63.1
Q ss_pred hHHhHHHHHHHHcC----CHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH----hcCHHHHHhHHHHHhccccc-CC
Q 013559 140 MGYNDFGDFYYAHG----ALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE----MGQFTHVTSYVSKAEQTPEA-LE 210 (441)
Q Consensus 140 ~~~~~la~~~~~~G----d~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~----~~~~~~~~~~~~ka~~~~~~-~d 210 (441)
.+++.||.+|.. | |+++|.++|.+..+. ++ ...+..+-.+... .+|+..+...+.++-..-.. ..
T Consensus 51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 51 DALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GS-KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 578999999999 7 999999999998543 11 3334444444433 57899998888887654210 00
Q ss_pred hhhhhhHHHHHHHHhcc----cccHHHHHHHHHhcCc
Q 013559 211 PVTIAKLRCAAGLAHLE----ARKYKLAARKFLEVGP 243 (441)
Q Consensus 211 ~~~~~~l~~~~gl~~l~----~r~y~~Aa~~Fl~~~~ 243 (441)
+... ..-|.++.. .+++.+|..+|-.+..
T Consensus 125 ~~a~----~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 125 VDAQ----MLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHH----HHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 2222 234555655 7899999999988854
No 210
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=77.99 E-value=8.7 Score=29.26 Aligned_cols=50 Identities=8% Similarity=0.184 Sum_probs=39.2
Q ss_pred HHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecC
Q 013559 338 IRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDS 388 (441)
Q Consensus 338 iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~ 388 (441)
.|.+++. ++.....++...+|+.+|++...+-..|..|...|-+..+-+.
T Consensus 17 ~~~~iL~-~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 17 VRLGIMI-FLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp HHHHHHH-HHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHH-HHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3444443 3333467999999999999999999999999999999876643
No 211
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=77.58 E-value=5.6 Score=36.92 Aligned_cols=96 Identities=10% Similarity=-0.075 Sum_probs=63.2
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc-cccCChhhhhhHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT-PEALEPVTIAKLR 218 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~-~~~~d~~~~~~l~ 218 (441)
.+++.+|..+.+.|++++|.+.|.++...... ... ..+.........++...+...+.++-.. ++ ++. ..
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~--~~~-~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~--~~~----~~ 222 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIPLQDQD--TRY-QGLVAQIELLXQAADTPEIQQLQQQVAENPE--DAA----LA 222 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS--HHH-HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT--CHH----HH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc--hHH-HHHHHHHHHHhhcccCccHHHHHHHHhcCCc--cHH----HH
Confidence 47899999999999999999999987555332 211 1122222223445556566556555432 22 322 33
Q ss_pred HHHHHHhcccccHHHHHHHHHhcCcC
Q 013559 219 CAAGLAHLEARKYKLAARKFLEVGPD 244 (441)
Q Consensus 219 ~~~gl~~l~~r~y~~Aa~~Fl~~~~t 244 (441)
..-|..++..|+|.+|...|..+...
T Consensus 223 ~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 223 TQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 45677889999999999999988753
No 212
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=76.54 E-value=50 Score=31.55 Aligned_cols=122 Identities=14% Similarity=0.005 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH---HHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcC-----chhHHHHHHHH
Q 013559 111 VDRRAEQRKEKLENELNAYRTNLIKE---SIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTT-----SKHIIHMCMSA 182 (441)
Q Consensus 111 ~~~~~~~~~~~Le~el~~~~~n~~~e---sir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~-----~~~~~~~~l~~ 182 (441)
.-..........+.-|+-+...+... .-..++...+.++...|+.+.|.+.+.++.....+ ..-.+.+.-.|
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~ 184 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESY 184 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHH
Confidence 33444444455666666554431110 12346678899999999999999999998665321 11122222233
Q ss_pred HHHHHHhc--CHHHHHhHHHHHhcccccCChhhhhhHHHHHHHHhcccccHHHHHHHHHh
Q 013559 183 ILVSIEMG--QFTHVTSYVSKAEQTPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLE 240 (441)
Q Consensus 183 i~~~i~~~--~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~ 240 (441)
+ .+..| ++..+-..+.++.... .+|....-+.. .++..|+|.+|-..+-.
T Consensus 185 v--~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln----~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 185 I--KFATNKETATSNFYYYEELSQTF--PTWKTQLGLLN----LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp H--HHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHH----HHHHHTCHHHHHHHHHH
T ss_pred H--HHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHH----HHHHcCCHHHHHHHHHH
Confidence 3 44445 7777777777764432 23432222222 68899999998777743
No 213
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=76.25 E-value=4.9 Score=30.76 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=37.5
Q ss_pred HHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 338 IRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 338 iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
.+.+++ ++++... ++...||+.||+|...+-+.|.+|-.+|.|..
T Consensus 18 ~~~~IL-~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 18 IVCEAI-KTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHH-HHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHH-HHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 333433 6777655 99999999999999999999999999999865
No 214
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=75.57 E-value=14 Score=37.33 Aligned_cols=99 Identities=10% Similarity=0.020 Sum_probs=68.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
..+..+|.++.+.|++++|.+.|.++..... .....+.....++....|+++.+...+.++-..... .+. +..
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~----~~~ 394 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHH----VYV 394 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTH----HHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccc--cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chH----HHH
Confidence 4678899999999999999999999877532 221234555666666788999999999998765432 111 112
Q ss_pred HHHHH-hcccccHHHHHHHHHhcCcCC
Q 013559 220 AAGLA-HLEARKYKLAARKFLEVGPDL 245 (441)
Q Consensus 220 ~~gl~-~l~~r~y~~Aa~~Fl~~~~t~ 245 (441)
..|.. ....|++..|...|-.+...+
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 22222 225899999999988776543
No 215
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=74.00 E-value=5.4 Score=36.58 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEE
Q 013559 329 DHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYA 395 (441)
Q Consensus 329 ~h~~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~ 395 (441)
.....+++.||..++...+.|=..++...||+.||+|...+-+-|..|-..|-+.- -+..|+.+.
T Consensus 26 s~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~--~~~~G~~V~ 90 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRV--ETHKGAVVA 90 (237)
T ss_dssp GHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred ccHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCceEEe
Confidence 34556899999999999999999999999999999999999999999999998854 345566544
No 216
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=73.68 E-value=18 Score=35.99 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=16.7
Q ss_pred HHhHHHHHHHH----cCCHHHHHHHHHHHHh
Q 013559 141 GYNDFGDFYYA----HGALGDAFKSYVRTRD 167 (441)
Q Consensus 141 ~~~~la~~~~~----~Gd~~~A~~~~~~~r~ 167 (441)
+++.||.+|.. .+|+++|.++|.+..+
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 55666666666 6666666666666543
No 217
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=73.51 E-value=8.4 Score=32.80 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=39.9
Q ss_pred HHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc---eEecCC
Q 013559 342 ALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ---ARIDSH 389 (441)
Q Consensus 342 ~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~---akID~~ 389 (441)
.+..++....+++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 344455556789999999999999999999999999999884 567755
No 218
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=73.25 E-value=22 Score=26.86 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=41.2
Q ss_pred HHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCC
Q 013559 337 QIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSH 389 (441)
Q Consensus 337 ~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~ 389 (441)
..|.+++. ++.....++...+|+.+|+|...+-+.|..|...|-+...-|..
T Consensus 24 ~~~~~il~-~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 24 PKRLLILC-MLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp HHHHHHHH-HHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred hHHHHHHH-HHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 34444443 44455579999999999999999999999999999997765544
No 219
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=73.24 E-value=19 Score=35.86 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=58.9
Q ss_pred hHHhHHHHHHHH----cCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH----hcCHHHHHhHHHHHhcccccCCh
Q 013559 140 MGYNDFGDFYYA----HGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE----MGQFTHVTSYVSKAEQTPEALEP 211 (441)
Q Consensus 140 ~~~~~la~~~~~----~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~----~~~~~~~~~~~~ka~~~~~~~d~ 211 (441)
.+++.+|.+|+. .||+.+|.++|.+..+.. + .+....+-.+... .+|++.+...+.++-.. +++
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~ 111 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----Y-TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---GLP 111 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCH
Confidence 477899999999 999999999999886541 1 3445555556666 78899998888887543 222
Q ss_pred hhhhhHHHHHHHHhcc----cccHHHHHHHHHhc
Q 013559 212 VTIAKLRCAAGLAHLE----ARKYKLAARKFLEV 241 (441)
Q Consensus 212 ~~~~~l~~~~gl~~l~----~r~y~~Aa~~Fl~~ 241 (441)
... ..-|..+.. .+++.+|...|-.+
T Consensus 112 ~a~----~~Lg~~y~~g~g~~~~~~~A~~~~~~a 141 (490)
T 2xm6_A 112 QAQ----QNLGVMYHEGNGVKVDKAESVKWFRLA 141 (490)
T ss_dssp HHH----HHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 221 112333333 55666666666554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=73.22 E-value=34 Score=29.14 Aligned_cols=29 Identities=14% Similarity=-0.151 Sum_probs=13.9
Q ss_pred HhHHhHHHHHHHHcCCHHHHHHHHHHHHh
Q 013559 139 RMGYNDFGDFYYAHGALGDAFKSYVRTRD 167 (441)
Q Consensus 139 r~~~~~la~~~~~~Gd~~~A~~~~~~~r~ 167 (441)
|+.+|.||--|++.|||++|.+++..+.+
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44444444444555555555444444433
No 221
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=72.49 E-value=11 Score=31.44 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=44.4
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccce--EecCCCCeEEEecCCchhHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQA--RIDSHNKILYARHADQRNATFQRVL 409 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a--kID~~~gvv~~~~~d~r~~~~~~~i 409 (441)
..-.+.+.+|+.+|+++.++.+.|.+||..|-|.= +.|..++......-+ ..|+++.
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~---pL~ekL~ 107 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQ---PLWGKLY 107 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECH---HHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHH---HHHHHHH
Confidence 35579999999999999999999999999998864 678776666666442 3455543
No 222
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=72.23 E-value=23 Score=28.67 Aligned_cols=68 Identities=10% Similarity=0.207 Sum_probs=49.7
Q ss_pred ccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCC--CCeEEEecCCchhHHHHHHHHHHhhHHHHHH
Q 013559 353 VDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSH--NKILYARHADQRNATFQRVLQTGSEFDQDVR 420 (441)
Q Consensus 353 I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~--~gvv~~~~~d~r~~~~~~~i~~~~~~~~~~~ 420 (441)
++...||+.+|++...+-+-|..|...|-+.-.-+.. .|..+...+.+....++.+.+..+.+.....
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~ 112 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQSWADRLG 112 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997654333 2334444444566666666666665555443
No 223
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=72.14 E-value=5.1 Score=30.42 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=41.3
Q ss_pred HHHHHHHHHhccccccccHHhHHHHcCCChH-HHHHHHHHHHHcCccce
Q 013559 337 QIRNKALIQYTHPFVSVDLHMMANAFKTSVA-GIEKELEALITDNQIQA 384 (441)
Q Consensus 337 ~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~-~~E~~L~~LI~~g~L~a 384 (441)
..+.+++ +|+.-....+-..+|+.||++.. .+-+.|..|-.+|-+..
T Consensus 11 ~~~~~IL-~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 11 EIKEKIC-DYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp HHHHHHH-HHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHH-HHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 4455555 88888999999999999999999 99999999999999973
No 224
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=71.71 E-value=5.7 Score=33.40 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=40.3
Q ss_pred HHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc---eEecCC
Q 013559 342 ALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ---ARIDSH 389 (441)
Q Consensus 342 ~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~---akID~~ 389 (441)
.+...+....+++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 344555667899999999999999999999999999999874 557765
No 225
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=71.51 E-value=7.4 Score=39.45 Aligned_cols=86 Identities=3% Similarity=-0.055 Sum_probs=44.9
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
.+..+|..++..|+|++|.+++.++. .......++.+++..|+|..|.....+ +. .+|+--..
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~----L~-~~ad~l~~---- 212 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLH----IV-VHADELEE---- 212 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTT----TT-TCHHHHHH----
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHH----HH-hCHhhHHH----
Confidence 34455555555555555555555441 123334555666777777777543222 11 12221110
Q ss_pred HHHHhcccccHHHHHHHHHhcCc
Q 013559 221 AGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-.-++...|.|.+|.++|-.+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhC
Confidence 11134567899999888887764
No 226
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=71.49 E-value=25 Score=26.82 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=38.6
Q ss_pred HHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCC
Q 013559 341 KALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHN 390 (441)
Q Consensus 341 ~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~ 390 (441)
.++..++.....++...+|+.+|+|...+-+.|..|...|-+...-+..+
T Consensus 25 ~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 25 AVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 33444444356799999999999999999999999999999977655444
No 227
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=71.37 E-value=9.1 Score=28.66 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.5
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTS 172 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~ 172 (441)
.+++.+|..|...|++++|.++|.+......+.
T Consensus 39 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 39 VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 467899999999999999999999997776543
No 228
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=70.43 E-value=5 Score=38.79 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHhHHhhhhchhHHHH-HHHHHHHHHHHHHHHhcccc----ccccHHhHHHHcCCC-hHHHHHHH
Q 013559 305 SRYASCLDYLGNLKANLLLDIHLHDH-VETLYDQIRNKALIQYTHPF----VSVDLHMMANAFKTS-VAGIEKEL 373 (441)
Q Consensus 305 ~~y~~~~~~L~~~~~~l~~D~~L~~h-~~~l~~~iR~~~i~qy~~pY----s~I~L~~mA~~fg~s-~~~~E~~L 373 (441)
.+|..||..... ..-+|+..+ ++.++..+|.+++..++++| ..++++.+++.||.+ .+++.+++
T Consensus 177 gNY~rFFrL~~~-----~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~ 246 (316)
T 3t5v_A 177 NFYARFFQLMQS-----PSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC 246 (316)
T ss_dssp CCHHHHHHHHTC-----TTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH
T ss_pred chHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 679999887653 124566555 45667899999999999999 489999999999995 55554444
No 229
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=70.37 E-value=6.6 Score=32.79 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc---eEecCC
Q 013559 342 ALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ---ARIDSH 389 (441)
Q Consensus 342 ~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~---akID~~ 389 (441)
.+..++....+++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 344455556789999999999999999999999999999885 567765
No 230
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=70.37 E-value=12 Score=32.27 Aligned_cols=47 Identities=9% Similarity=0.176 Sum_probs=39.5
Q ss_pred HHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc---eEecCC
Q 013559 343 LIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ---ARIDSH 389 (441)
Q Consensus 343 i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~---akID~~ 389 (441)
+...+..-.+++...||+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 22 IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 22 ILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 34444556789999999999999999999999999999884 577776
No 231
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=69.99 E-value=6.5 Score=33.08 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=40.0
Q ss_pred HHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc---eEecCC
Q 013559 343 LIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ---ARIDSH 389 (441)
Q Consensus 343 i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~---akID~~ 389 (441)
+...+....+++...||+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 34455556889999999999999999999999999999885 578876
No 232
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=69.83 E-value=16 Score=31.10 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=42.1
Q ss_pred HHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc---eEecCC
Q 013559 341 KALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ---ARIDSH 389 (441)
Q Consensus 341 ~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~---akID~~ 389 (441)
+.+.+.+..-.+++...||+.+|+|...+-+.|.+|..+|-|. |.+|..
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 4456666777899999999999999999999999999999774 778865
No 233
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=69.64 E-value=2.9 Score=33.22 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceE
Q 013559 326 HLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQAR 385 (441)
Q Consensus 326 ~L~~h~~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ak 385 (441)
.+..-+..++...|.+++.....+=..++...||+.||+|...+-+-|..|...|-+..+
T Consensus 7 ~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 7 LFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 333334444444555666655556557999999999999999999999999999999754
No 234
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=69.35 E-value=95 Score=30.93 Aligned_cols=99 Identities=11% Similarity=0.074 Sum_probs=72.2
Q ss_pred hHHhHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhc
Q 013559 140 MGYNDFGDFYYA-------HGALG-------DAFKSYVRTRD-YCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQ 204 (441)
Q Consensus 140 ~~~~~la~~~~~-------~Gd~~-------~A~~~~~~~r~-~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~ 204 (441)
..++.+|.++.+ .|+++ +|.++|.+... .+.. ...+.+....+....|+++.+.....++-.
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 467889999886 79987 89999999875 4432 255666777777888999999999999877
Q ss_pred ccccCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCcCC
Q 013559 205 TPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGPDL 245 (441)
Q Consensus 205 ~~~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~t~ 245 (441)
... .++. .+....|.+....|++..|...|-.+....
T Consensus 350 ~~p-~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 350 IED-IDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp SSS-SCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ccc-cCch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 532 1221 234445556667889999999998887543
No 235
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=68.99 E-value=17 Score=28.64 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCC
Q 013559 336 DQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSH 389 (441)
Q Consensus 336 ~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~ 389 (441)
...|.+++..+.. ..++...+|+.+|++...+-+.|..|...|-|..+-|..
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3445555544432 678999999999999999999999999999998766543
No 236
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=68.83 E-value=16 Score=29.66 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=33.6
Q ss_pred hHHhHHHHHHHH----cCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH----hcCHHHHHhHHHHHhc
Q 013559 140 MGYNDFGDFYYA----HGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE----MGQFTHVTSYVSKAEQ 204 (441)
Q Consensus 140 ~~~~~la~~~~~----~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~----~~~~~~~~~~~~ka~~ 204 (441)
.+++.||.+|.. .+|+.+|.++|.+.-+.- + .+.+..+-.+... .+|+..+...+.++-.
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----D-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC----C-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 356677777776 667777777776664431 1 2333344444444 4566666666665543
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.41 E-value=19 Score=31.26 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=26.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYC 169 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~ 169 (441)
.++.-+|+.+|..|+|..|...|.+....+
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999975544
No 238
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=68.18 E-value=4.5 Score=36.01 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHc
Q 013559 335 YDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITD 379 (441)
Q Consensus 335 ~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~ 379 (441)
..+=|...|.++++....|+.+.||+.||+|.+.+-+.|..|=.-
T Consensus 9 ~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~ 53 (190)
T 4a0z_A 9 KKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIP 53 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCc
Confidence 345688899999999999999999999999999999888776433
No 239
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=67.91 E-value=17 Score=27.87 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCC
Q 013559 334 LYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHN 390 (441)
Q Consensus 334 l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~ 390 (441)
+-+..|.+++. ++.- ..++...+|+.+|+|...+-+.|..|...|-+..+-+...
T Consensus 20 l~~~~r~~Il~-~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~ 74 (98)
T 3jth_A 20 MANERRLQILC-MLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQT 74 (98)
T ss_dssp HCSHHHHHHHH-HTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTC
T ss_pred cCCHHHHHHHH-HHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCE
Confidence 33445555554 4443 7899999999999999999999999999999988755443
No 240
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=67.90 E-value=11 Score=28.96 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhHHhHHHHHHHHcCCHHHHHHHHHH
Q 013559 115 AEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVR 164 (441)
Q Consensus 115 ~~~~~~~Le~el~~~~~n~~~esir~~~~~la~~~~~~Gd~~~A~~~~~~ 164 (441)
..+=...++..|+..+.-.--.++...++.=|++|++.||+..|+.++.-
T Consensus 11 i~kYi~~l~eaL~~i~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isY 60 (86)
T 2oo2_A 11 TLKWLERIEERVKEIEGDEGFMRNIEAYISDSRYFLEKGDLVRAFECVVW 60 (86)
T ss_dssp HHHHHHHHHHHGGGEEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334444544444332111123445788889999999999999998764
No 241
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=67.80 E-value=2.8 Score=34.42 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEec
Q 013559 334 LYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARID 387 (441)
Q Consensus 334 l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID 387 (441)
-.++.|.-++.|++.|=.+=.|++++=.=-=-...||..|..|...|+|..|||
T Consensus 34 ~~ee~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kIt 87 (118)
T 2cru_A 34 REAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVS 87 (118)
T ss_dssp HHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 345678889999999988888888764322224579999999999999999886
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=67.34 E-value=11 Score=31.23 Aligned_cols=40 Identities=13% Similarity=-0.115 Sum_probs=33.1
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhH
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHI 175 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~ 175 (441)
+.-|+.+|-||--+++.|||.+|.+++..+.+.-+...+.
T Consensus 71 ~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 71 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 3678899999999999999999999999887765555543
No 243
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=66.89 E-value=22 Score=27.15 Aligned_cols=80 Identities=9% Similarity=-0.144 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHHHHHHhcccccHHHHH
Q 013559 156 GDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAGLAHLEARKYKLAA 235 (441)
Q Consensus 156 ~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa 235 (441)
++|.+.|.+........ ....+.+..+....|+|+.+...+.++-.... .++ .....-|..+...|+|.+|.
T Consensus 2 ~~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~----~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYS----VAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH----HHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcH----HHHHHHHHHHHHcCCHHHHH
Confidence 35677777775554322 35666777788899999999999998876422 121 22345678888999999999
Q ss_pred HHHHhcCc
Q 013559 236 RKFLEVGP 243 (441)
Q Consensus 236 ~~Fl~~~~ 243 (441)
..|-.+..
T Consensus 74 ~~~~~al~ 81 (115)
T 2kat_A 74 QAWESGLA 81 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887754
No 244
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=66.49 E-value=34 Score=26.04 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=41.1
Q ss_pred hccccccccHHhH----HHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 346 YTHPFVSVDLHMM----ANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 346 y~~pYs~I~L~~m----A~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
++.....++...+ |+.+|++...+-+.|.+|...|-+.-..|.....+..+
T Consensus 16 ~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT 70 (99)
T 1tbx_A 16 YLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLT 70 (99)
T ss_dssp HHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred HHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEEC
Confidence 3334567899999 99999999999999999999999988888744444444
No 245
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=66.16 E-value=46 Score=26.15 Aligned_cols=46 Identities=7% Similarity=-0.066 Sum_probs=39.6
Q ss_pred ccccHHhHHHHc-CCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 351 VSVDLHMMANAF-KTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 351 s~I~L~~mA~~f-g~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
..++...||+.+ |++...+-..|..|...|-|.-+.|..++-....
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~ 80 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEY 80 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 568999999999 9999999999999999999998888766544333
No 246
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=65.85 E-value=8.7 Score=29.52 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=24.3
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCT 170 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~ 170 (441)
++++-+|..+++.|+|.+|++++.++.+...
T Consensus 44 rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 44 AALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4777888888888888888888888765543
No 247
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=65.75 E-value=22 Score=26.45 Aligned_cols=37 Identities=11% Similarity=0.303 Sum_probs=32.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHH
Q 013559 143 NDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMC 179 (441)
Q Consensus 143 ~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~ 179 (441)
..+|+-+...|++++|+.++++...-|..+...+.++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4789999999999999999999988999988877655
No 248
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=65.49 E-value=13 Score=28.57 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceE
Q 013559 333 TLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQAR 385 (441)
Q Consensus 333 ~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ak 385 (441)
.+-...|.+++... ...++...+|+.||+|...+-+.|..|...|-|..+
T Consensus 27 ~l~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 27 AVTNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHSCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33444555555444 356899999999999999999999999999999753
No 249
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=65.15 E-value=3.3 Score=34.13 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
...+++.|+..+...-+.|=..+ +...||+.||+|...+-+-+..|..+|-|..+ +..|+.+..
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~~ 77 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVAS 77 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEcc
Confidence 45688889989999889999999 99999999999999999999999999988654 556766654
No 250
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=65.13 E-value=21 Score=25.40 Aligned_cols=31 Identities=19% Similarity=0.507 Sum_probs=27.1
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCT 170 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~ 170 (441)
.+++.+|..+...|++++|.++|.+..+...
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4678999999999999999999999877643
No 251
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=64.31 E-value=27 Score=27.18 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecC
Q 013559 336 DQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDS 388 (441)
Q Consensus 336 ~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~ 388 (441)
...|.+++.... ...++...+|+.+|+|...+-+.|..|...|-+..+-+.
T Consensus 25 ~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 25 DYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp SHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 344545544333 356899999999999999999999999999999876554
No 252
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=64.12 E-value=32 Score=27.81 Aligned_cols=87 Identities=11% Similarity=0.023 Sum_probs=62.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH----hcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 145 FGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE----MGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 145 la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~----~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
||.+|..-+.+++|.++|.+.-+. ++ .+.+..+-.+... .+|+..+...+.|+-.. +++... ..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---g~~~a~----~~ 98 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----NS-GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---NDQDGC----LI 98 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHH----HH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----CC-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC---CCHHHH----HH
Confidence 999999999999999999988654 11 3445555555555 68999999999988654 344332 22
Q ss_pred HHHHhcc----cccHHHHHHHHHhcCc
Q 013559 221 AGLAHLE----ARKYKLAARKFLEVGP 243 (441)
Q Consensus 221 ~gl~~l~----~r~y~~Aa~~Fl~~~~ 243 (441)
-|.++.. .+++.+|..+|-.+..
T Consensus 99 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 99 LGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 3555555 7899999999887753
No 253
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=63.18 E-value=43 Score=28.49 Aligned_cols=90 Identities=6% Similarity=0.001 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHhHHHHHHHHcC---CHHHHHHHHHHHHhhhcCchhHHHH
Q 013559 102 AMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHG---ALGDAFKSYVRTRDYCTTSKHIIHM 178 (441)
Q Consensus 102 ~~D~~~~~~~~~~~~~~~~~Le~el~~~~~n~~~esir~~~~~la~~~~~~G---d~~~A~~~~~~~r~~~~~~~~~~~~ 178 (441)
++.++.+...+++...+++ .+.. -..+.+.+|.-+.+.+ +..++.+.+..+.... .+...-|.
T Consensus 8 ~l~~~~l~~~~~~y~~e~~----------~~~~---~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~ 73 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKA----------AGSV---SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDY 73 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHH----------TTCC---CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHc----------cCCC---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHH
Confidence 4456666666555444321 1111 2246789999999988 7779999999886642 24456777
Q ss_pred HHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 179 CMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 179 ~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
++.+--.....+|++.+..++.++-..
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 777777778999999999999887654
No 254
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=63.04 E-value=13 Score=33.89 Aligned_cols=66 Identities=8% Similarity=0.145 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
...+++.++.++...-+.|-..+ +-..||+.||+|...+-+-|..|..+|-|..+ +-.|+.+...+
T Consensus 11 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~~ 77 (236)
T 3edp_A 11 FEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPKL 77 (236)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccCc
Confidence 45677888888888788899999 99999999999999999999999999998654 55677776543
No 255
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=62.73 E-value=1.7 Score=33.26 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=36.7
Q ss_pred HHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEec
Q 013559 339 RNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARID 387 (441)
Q Consensus 339 R~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID 387 (441)
|.-++.|++.|=.+-.|++++-.=-=-...+|..|.+|...|+|.+|||
T Consensus 7 r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 7 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp SSHHHHTTBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 4556778888877777777664322224579999999999999999886
No 256
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=62.73 E-value=15 Score=32.04 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=36.3
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
-.++...||..+|++.+.+-+.+.+|-.+|-|.- ..|.|...++
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~ 211 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVKL----SRGKITILDS 211 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCH
Confidence 3678999999999999999999999999998842 3566666533
No 257
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=62.40 E-value=18 Score=25.20 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHHHHHHhccccccccHHhHHHHc-----CCChHHHHHHHHHHHHcCccceEecCCCCeE
Q 013559 338 IRNKALIQYTHPFVSVDLHMMANAF-----KTSVAGIEKELEALITDNQIQARIDSHNKIL 393 (441)
Q Consensus 338 iR~~~i~qy~~pYs~I~L~~mA~~f-----g~s~~~~E~~L~~LI~~g~L~akID~~~gvv 393 (441)
-|...+..++.....++.+.+++.| ++|...+-+.|..+ |.+ ++...+|..
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v--~~~~~~~~~ 60 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV--KVPTNNGSY 60 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE--EEEETTTEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE--EEecCCCce
Confidence 4566677777777889999999999 99999999999843 555 666656643
No 258
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=62.39 E-value=11 Score=31.42 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=39.1
Q ss_pred HHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc---eEecCC
Q 013559 343 LIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ---ARIDSH 389 (441)
Q Consensus 343 i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~---akID~~ 389 (441)
+..++.....++...||+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 12 iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 12 LVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 33445556789999999999999999999999999999883 567765
No 259
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=62.32 E-value=23 Score=33.86 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=57.3
Q ss_pred HHhHHHHHHHHc-----CCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH-hcCHHHHHhHHHHHhccccc--CChh
Q 013559 141 GYNDFGDFYYAH-----GALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE-MGQFTHVTSYVSKAEQTPEA--LEPV 212 (441)
Q Consensus 141 ~~~~la~~~~~~-----Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~-~~~~~~~~~~~~ka~~~~~~--~d~~ 212 (441)
+|.-||.+|+.. ||.++|.++|.+..+...+. .++......+.... .|++..+..++.++-...-. .+|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~--~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH--DPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT--CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 788999999995 99999999999999987532 24444344443333 58999999999999887552 4566
Q ss_pred hhhhHHHHHH
Q 013559 213 TIAKLRCAAG 222 (441)
Q Consensus 213 ~~~~l~~~~g 222 (441)
+.+.+.--++
T Consensus 279 lan~~~q~eA 288 (301)
T 3u64_A 279 LLVILSQKRA 288 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444333
No 260
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=62.16 E-value=13 Score=28.07 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=26.6
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYC 169 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~ 169 (441)
.+++.+|..|...|++++|.++|.+..+..
T Consensus 42 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 42 GTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 378999999999999999999999886654
No 261
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=61.88 E-value=21 Score=26.22 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=28.1
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCc
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTS 172 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~ 172 (441)
+++.+|..|+..|++++|.++|.+........
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 78899999999999999999999987765443
No 262
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=61.77 E-value=13 Score=33.25 Aligned_cols=64 Identities=9% Similarity=0.144 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 331 VETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
.+.+++.||..++..-+.|=..++-..||+.||||...+-+-|..|-.+|-+..+ +..|+.+..
T Consensus 14 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 77 (218)
T 3sxy_A 14 RTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVTD 77 (218)
T ss_dssp CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEcC
Confidence 4578899999999999999999999999999999999999999999999999654 556766654
No 263
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=61.62 E-value=8.9 Score=33.26 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=39.6
Q ss_pred HHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc---eEecCC
Q 013559 342 ALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ---ARIDSH 389 (441)
Q Consensus 342 ~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~---akID~~ 389 (441)
.+.+.+....+++...||+.+|+|...+-+.|.+|...|-|. |.+|..
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 344455556789999999999999999999999999999884 567764
No 264
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=61.59 E-value=6.2 Score=30.89 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=28.8
Q ss_pred HHHHHHHhccccccccHHhHHHHcCCChHHHHHHHH
Q 013559 339 RNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELE 374 (441)
Q Consensus 339 R~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~ 374 (441)
|...+.+|+.... +++..+|+.+|+|...+-+.|.
T Consensus 8 R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 8 RTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 5566777777766 9999999999999999877763
No 265
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=61.55 E-value=21 Score=30.63 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=39.4
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
..++.+.+|+.+|+|+..+++-+..|-..|-+..+=-...|..-..+|
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 469999999999999999999999999999998764444455555544
No 266
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=61.42 E-value=9 Score=31.55 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=35.5
Q ss_pred HHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc
Q 013559 343 LIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 343 i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ 383 (441)
+..++.....++...||+.+|+|...+-+.|.+|...|-|.
T Consensus 9 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 9 ILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 34455556789999999999999999999999999999884
No 267
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=61.32 E-value=55 Score=25.33 Aligned_cols=49 Identities=18% Similarity=0.083 Sum_probs=39.1
Q ss_pred HHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecC
Q 013559 338 IRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDS 388 (441)
Q Consensus 338 iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~ 388 (441)
.|.+++. ++ ....++...+|+.+|++...+-+.|..|...|-|..+-+.
T Consensus 22 ~r~~IL~-~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~g 70 (114)
T 2oqg_A 22 TRWEILT-EL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVG 70 (114)
T ss_dssp HHHHHHH-HH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHH-HH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecC
Confidence 4444444 33 2456899999999999999999999999999999876663
No 268
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=61.08 E-value=33 Score=36.09 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=52.8
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRC 219 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~ 219 (441)
..+..+|+.+.+.|+++.|.++|.++.++- .+..+....++.+.+......+... ++. ..
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~-----------~l~~l~~~~~~~~~~~~~~~~a~~~---~~~------~~ 741 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLE-----------SLFLLHSSFNNKEGLVTLAKDAETT---GKF------NL 741 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHH-----------HHHHHHHHTTCHHHHHHHHHHHHHT---TCH------HH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChh-----------hhHHHHHHcCCHHHHHHHHHHHHHc---Cch------HH
Confidence 356799999999999999999999887763 2334444567777655443333221 111 11
Q ss_pred HHHHHhcccccHHHHHHHHHhcC
Q 013559 220 AAGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 220 ~~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
...+++..|++.+|.+.|.+.-
T Consensus 742 -A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 742 -AFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp -HHHHHHHHTCHHHHHHHHHHTT
T ss_pred -HHHHHHHcCCHHHHHHHHHHcC
Confidence 1223555788888888888764
No 269
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=60.80 E-value=15 Score=32.88 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 330 HVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 330 h~~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
-.+.+++.||..++..-+.|=..+.-..||+.||||..-+-+-|..|-.+|-+..+ +..|+.+..
T Consensus 17 ~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~--~~~G~~V~~ 81 (222)
T 3ihu_A 17 ASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ--RHRGAVIRR 81 (222)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--STTCEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCCeEEec
Confidence 35678899999999999999999999999999999999999999999999998653 556766654
No 270
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=60.41 E-value=9.5 Score=32.03 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=38.8
Q ss_pred HHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc---eEecCC
Q 013559 343 LIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ---ARIDSH 389 (441)
Q Consensus 343 i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~---akID~~ 389 (441)
+..++....+++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 33455556789999999999999999999999999999874 566653
No 271
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=60.41 E-value=38 Score=26.42 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=38.8
Q ss_pred cccccHHhHHHHc-CCChHHHHHHHHHHHHcCccceEecCCCCe
Q 013559 350 FVSVDLHMMANAF-KTSVAGIEKELEALITDNQIQARIDSHNKI 392 (441)
Q Consensus 350 Ys~I~L~~mA~~f-g~s~~~~E~~L~~LI~~g~L~akID~~~gv 392 (441)
....+...+|+.+ |++...+-+.|..|...|-|.-+.|..++.
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r 68 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPP 68 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 4678999999999 999999999999999999999888876653
No 272
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=60.29 E-value=16 Score=33.51 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEec
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARH 397 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~ 397 (441)
...+++.++.++...-+.|=..+ +...||+.||+|...+-+-|..|..+|-|..+ +-.|+.+...
T Consensus 12 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 77 (243)
T 2wv0_A 12 YYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL--KGRGTFVSKP 77 (243)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe--CCCeEEEeCC
Confidence 45677888888888888899999 89999999999999999999999999998643 4457766553
No 273
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=60.01 E-value=17 Score=33.05 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 331 VETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
.+.+++.||..++..-+.|=..++-..||+.||||...+-+-|..|-.+|-|.. -+..|+.+..
T Consensus 30 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~--~~~~G~~V~~ 93 (239)
T 2hs5_A 30 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAH--ELNRGVFVRV 93 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCeeEEeC
Confidence 467889999999999999999999999999999999999999999999999864 3556766654
No 274
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=59.86 E-value=42 Score=28.94 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=37.2
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
...++...||..+|++.+.+-+.+.+|-.+|-|.- ..|.|...++
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~ 205 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVRL----GPGTVEVREA 205 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEeCH
Confidence 46789999999999999999999999999998852 3466666633
No 275
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=59.75 E-value=22 Score=32.71 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
...+++.++.++. . +.|=..+ +-..||+.||+|...+-+-|..|..+|-|.. +-.|+.+...+
T Consensus 16 y~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~~ 79 (248)
T 3f8m_A 16 HQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVARPK 79 (248)
T ss_dssp HHHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECCCC
T ss_pred HHHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEccCc
Confidence 4567778887777 6 8999999 9999999999999999999999999999965 66677766543
No 276
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=59.65 E-value=17 Score=32.83 Aligned_cols=64 Identities=8% Similarity=0.002 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
.+.+++.||..+...-+.|=..+ +-..||+.||||-..+-+-|..|..+|-|..+ +..|+.+..
T Consensus 9 ~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~--~g~G~~V~~ 73 (239)
T 1hw1_A 9 AGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ--HGKPTKVNN 73 (239)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe--cCCCcEeeC
Confidence 46788889999999889999999 89999999999999999999999999988643 445766653
No 277
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=59.03 E-value=17 Score=30.50 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=37.9
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
..++.+.+|+.+|+|...+++-+..|-..|-+..+=-...|..-..+|
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCc
Confidence 469999999999999999999999999999987653333344444433
No 278
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.93 E-value=48 Score=26.49 Aligned_cols=44 Identities=11% Similarity=0.004 Sum_probs=38.6
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeE
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKIL 393 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv 393 (441)
...++...+|+.+|++...+-+.|.+|...|-|.-.-|..++-.
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~ 91 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRR 91 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCe
Confidence 45699999999999999999999999999999988777766543
No 279
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=58.81 E-value=57 Score=28.32 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=35.5
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
-.++...||..+|++.+.+-+.+.+|-.+|-|.- ..|.|...++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~ 220 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL----DGREISILDR 220 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE----SSSCEEESCS
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe----cCCEEEEeCH
Confidence 4578899999999999999999999999998843 3455555443
No 280
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=58.39 E-value=26 Score=30.72 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=29.8
Q ss_pred cccHHhHHHHcCCChHHHHHHHHHHHHcCccc
Q 013559 352 SVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ 383 (441)
.++...||+.+|++.+.+-+.+.+|..+|-|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47899999999999999999999999999874
No 281
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=57.65 E-value=22 Score=26.62 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=37.4
Q ss_pred HHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 343 LIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 343 i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
+...+.+=...+...+|+.||++-..+-+.|-.|=..|.+..
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~ 61 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKM 61 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEec
Confidence 334788888899999999999999999999999999998864
No 282
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=57.57 E-value=18 Score=33.79 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEec
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARH 397 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~ 397 (441)
...+++.|+.++...-+.|=..+ +-..||+.||+|...+-+-|..|..+|-|..+ +-.|+.+...
T Consensus 31 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 96 (272)
T 3eet_A 31 YLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR--SGSGTYVRER 96 (272)
T ss_dssp HHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--CC--EEECCC
T ss_pred HHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCceEEEecC
Confidence 45777888888888888999999 99999999999999999999999999987432 3346655543
No 283
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=57.33 E-value=39 Score=25.86 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 333 TLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 333 ~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
.+-+..|.+++..... ..++...+|+.+|+|...+-+.|..|...|-+..+-+........+
T Consensus 19 ~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~ 80 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLT 80 (102)
T ss_dssp HHCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEEC
T ss_pred HcCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEC
Confidence 3334455555444432 4589999999999999999999999999999988766654333333
No 284
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=57.27 E-value=56 Score=25.96 Aligned_cols=44 Identities=16% Similarity=0.054 Sum_probs=38.7
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeE
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKIL 393 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv 393 (441)
+..++...+|+.+|++...+-+.|.+|...|-+.-.-|..++-.
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~ 93 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRR 93 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCe
Confidence 45799999999999999999999999999999988777766543
No 285
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=57.14 E-value=41 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.1
Q ss_pred HHhHHhHHHHHHHHcCCHHHHHHHHHHH
Q 013559 138 IRMGYNDFGDFYYAHGALGDAFKSYVRT 165 (441)
Q Consensus 138 ir~~~~~la~~~~~~Gd~~~A~~~~~~~ 165 (441)
+...++.=|++|++.||+..|+.++.-.
T Consensus 38 mA~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 38 RALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3347788899999999999999988653
No 286
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=56.97 E-value=21 Score=32.51 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 332 ETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 332 ~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
..+++.|+.++...-+.|=..+ +...||+.||+|...+-+-|..|..+|-|..+ +..|+.+..
T Consensus 8 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~--~g~G~~V~~ 71 (239)
T 3bwg_A 8 QQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV--RGSGIFVRK 71 (239)
T ss_dssp CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe--CCceEEEec
Confidence 4677788888888788999999 99999999999999999999999999998643 455666654
No 287
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=56.66 E-value=53 Score=26.10 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=40.1
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEE
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYA 395 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~ 395 (441)
...++...+|+.+|++...+-+.|.+|...|-+.-.-|..++-...
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~ 86 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYI 86 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEE
Confidence 5779999999999999999999999999999998887777664433
No 288
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=56.27 E-value=15 Score=29.70 Aligned_cols=46 Identities=17% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 337 QIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 337 ~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
.++.+++..|-. .-.+...+|+.||++...+.+++..+...|.+-.
T Consensus 7 ~l~~~i~~~~~~--~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 7 AIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp HHHHHHGGGCSS--SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 455555555532 3457889999999999999999999999999865
No 289
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=56.21 E-value=62 Score=25.62 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecC
Q 013559 331 VETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDS 388 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~ 388 (441)
...+-+..|.+++.... -..++...||+.+|+|...+-+.|..|...|-+..+-+.
T Consensus 12 ~~al~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG 67 (118)
T ss_dssp HHHHTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHhCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC
Confidence 34455556666655443 256899999999999999999999999999999887774
No 290
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=55.61 E-value=16 Score=30.37 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=39.7
Q ss_pred HHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc---eEecCC
Q 013559 343 LIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ---ARIDSH 389 (441)
Q Consensus 343 i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~---akID~~ 389 (441)
+..++.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 44466666789999999999999999999999999999885 467754
No 291
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=55.57 E-value=78 Score=25.28 Aligned_cols=49 Identities=8% Similarity=0.056 Sum_probs=40.3
Q ss_pred cccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC---eEEEe
Q 013559 348 HPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK---ILYAR 396 (441)
Q Consensus 348 ~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g---vv~~~ 396 (441)
.....++...+|+.+|++...+-+.|.+|...|-+.-.-|..++ .+..+
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT 99 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLT 99 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEEC
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEEC
Confidence 35678999999999999999999999999999999876655444 44444
No 292
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=55.44 E-value=35 Score=29.97 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=35.5
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEec
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARH 397 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~ 397 (441)
-.++...||..+|++.+.+-+.|.+|..+|-|.- ..|.|...+
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 216 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILEV----SPRSVTLLD 216 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSCEEESC
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe----cCCEEEEeC
Confidence 4688999999999999999999999999998852 345566553
No 293
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=55.26 E-value=2 Score=32.79 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHHHHhccccccccHHhHHHHcCCCh---HHHHHHHHHHHHcCccceEec
Q 013559 339 RNKALIQYTHPFVSVDLHMMANAFKTSV---AGIEKELEALITDNQIQARID 387 (441)
Q Consensus 339 R~~~i~qy~~pYs~I~L~~mA~~fg~s~---~~~E~~L~~LI~~g~L~akID 387 (441)
|..++.|++.|=.+-.|++++- +.+ +.+|..|..|...|+|.+|||
T Consensus 9 r~~iL~qiL~~eAreRL~rI~l---vKPe~A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 9 KKQIMMQILTPEARSRLANLRL---TRPDFVEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp SHHHHTTTCCHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHHHHcCHHHHHHHHhhhh---cCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 4566777777766666655542 343 479999999999999999886
No 294
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=55.19 E-value=55 Score=26.15 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEec
Q 013559 333 TLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARID 387 (441)
Q Consensus 333 ~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID 387 (441)
.+-...|.+++... .....++...+|+.+|+|...+-+.|..|...|-+..+-+
T Consensus 38 al~~~~rl~IL~~L-~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 38 AIADENRAKITYAL-CQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp HHHSHHHHHHHHHH-HHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HhCCHHHHHHHHHH-HHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 33344455555433 3245689999999999999999999999999999976544
No 295
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=55.05 E-value=41 Score=27.14 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=34.5
Q ss_pred hccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 346 YTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 346 y~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
++.... ++...+|+.+|++...+-+.|.+|...|-|.-+-|..++
T Consensus 46 ~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~ 90 (146)
T 3tgn_A 46 LLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDA 90 (146)
T ss_dssp HHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCC
Confidence 445566 999999999999999999999999999999877755554
No 296
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=54.65 E-value=36 Score=29.25 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=30.0
Q ss_pred cccHHhHHHHcCCChHHHHHHHHHHHHcCccc
Q 013559 352 SVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ 383 (441)
.++-..||..+|++.+.+-+.+.+|..+|-|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 57899999999999999999999999999875
No 297
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=54.49 E-value=51 Score=26.52 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=38.9
Q ss_pred hccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 346 YTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 346 y~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
++. ...++...+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 45 ~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 45 ATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp HHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 344 678999999999999999999999999999999877665544
No 298
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=53.91 E-value=26 Score=26.68 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=37.1
Q ss_pred ccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 353 VDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 353 I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
++...+|+.+|++...+-+.|..|...|-|...-|.-...|..+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 99999999999999999999999999999954455555556555
No 299
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=53.73 E-value=11 Score=38.14 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=46.8
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
++..+|+.+++.|.|++|..+|.++ +.+..+..+.+..|+|..|.....|+... ..|. .
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~---~~Wk--~----- 182 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKANST---RTWK--E----- 182 (449)
T ss_dssp -------------CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH---HHHH--H-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHHHHHHHHHcCCc---hhHH--H-----
Confidence 8899999999999999999999976 23345667778899999999999988321 1221 1
Q ss_pred HHHHhcccccHHHHHHHHHhcC
Q 013559 221 AGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
-+-.++..|+|..|....+.+.
T Consensus 183 v~~aCv~~~ef~lA~~~~l~L~ 204 (449)
T 1b89_A 183 VCFACVDGKEFRLAQMCGLHIV 204 (449)
T ss_dssp HHHHHHHTTCHHHHHHTTTTTT
T ss_pred HHHHHHHcCcHHHHHHHHHHHH
Confidence 1234566788888876666543
No 300
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=53.20 E-value=19 Score=28.24 Aligned_cols=37 Identities=11% Similarity=0.303 Sum_probs=31.3
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHH
Q 013559 143 NDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMC 179 (441)
Q Consensus 143 ~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~ 179 (441)
..+|+-+...|+++.|+.++++...-|..+...+.++
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4779999999999999999999888888887766554
No 301
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=53.00 E-value=55 Score=26.35 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=37.2
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC---eEEEe
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK---ILYAR 396 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g---vv~~~ 396 (441)
+..++...+|+.+|++...+-+.|.+|...|-|.-+-|..++ .|..+
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 98 (143)
T 3oop_A 49 NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLT 98 (143)
T ss_dssp HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEEC
T ss_pred cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeEC
Confidence 367999999999999999999999999999999877655444 45544
No 302
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=52.76 E-value=17 Score=31.85 Aligned_cols=48 Identities=19% Similarity=0.114 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcccc-ccccHHhHHHHcCCChHHHHHHHHHHHHcCc-cc
Q 013559 336 DQIRNKALIQYTHPF-VSVDLHMMANAFKTSVAGIEKELEALITDNQ-IQ 383 (441)
Q Consensus 336 ~~iR~~~i~qy~~pY-s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~-L~ 383 (441)
..-|.+.+.+++..- ..++...||+.||+|...+.+.|..|-..|- |.
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 345677777887643 4599999999999999999999999988887 64
No 303
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=52.66 E-value=73 Score=25.56 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEec
Q 013559 336 DQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARID 387 (441)
Q Consensus 336 ~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID 387 (441)
+..|.+++..... ...+...+|+.+|++...+-+.|..|...|-+..+-+
T Consensus 45 ~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 45 DPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3345555554433 4689999999999999999999999999999977655
No 304
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=52.42 E-value=31 Score=29.98 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHhHHHHHhcccc----cCChhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 177 HMCMSAILVSIEMGQFTHVTSYVSKAEQTPE----ALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 177 ~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~----~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
-.++.+++-.+..+-|+.|....+++.+..+ ...|..+....++-|-.++.+|+|..|...|-.+..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3467788888999999999888888766543 234778888899999999999999999999988753
No 305
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=52.30 E-value=61 Score=26.85 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=38.2
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
+..++...||+.+|++...+-+.|.+|...|-|.-+-|..++
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 467999999999999999999999999999999888777665
No 306
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=52.28 E-value=55 Score=25.95 Aligned_cols=42 Identities=5% Similarity=0.139 Sum_probs=37.2
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
...++...+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 567999999999999999999999999999999877666554
No 307
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=52.21 E-value=65 Score=25.67 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=35.9
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
..++.+.+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 38999999999999999999999999999999877776655
No 308
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=52.04 E-value=73 Score=25.76 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=37.2
Q ss_pred ccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 349 PFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 349 pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
.+..++...+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 51 ~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 51 LTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 3568999999999999999999999999999999876655444
No 309
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=51.92 E-value=22 Score=29.77 Aligned_cols=41 Identities=12% Similarity=-0.096 Sum_probs=33.3
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHH
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHII 176 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~ 176 (441)
+..|+.++-||-=+++.|||++|.++...+.+.-....+..
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34678899999999999999999999998877766655533
No 310
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=51.78 E-value=78 Score=25.28 Aligned_cols=44 Identities=7% Similarity=-0.012 Sum_probs=39.0
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeE
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKIL 393 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv 393 (441)
...++...+|+.+|++...+-+.|.+|...|-|.-.-|..++-.
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~ 88 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRA 88 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCce
Confidence 45799999999999999999999999999999988877766643
No 311
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=51.65 E-value=58 Score=26.03 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=44.2
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC---eEEEecCCchhHHHHHHHHHH
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK---ILYARHADQRNATFQRVLQTG 412 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g---vv~~~~~d~r~~~~~~~i~~~ 412 (441)
..++...+|+.+|++...+-+.|.+|...|-|.-+-|..++ .|..+ +.-...+.++....
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT--~~G~~~~~~~~~~~ 114 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVN--AQQRKKIESLLSRV 114 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECC--SHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC--HHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999876666554 44433 22334444444443
No 312
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=51.30 E-value=61 Score=26.19 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=36.3
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCe
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKI 392 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gv 392 (441)
+..++...+|+.+|++...+-+.|.+|...|-|.-.-|..++-
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 4579999999999999999999999999999998777665553
No 313
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=50.77 E-value=44 Score=33.09 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=59.9
Q ss_pred HHhHHHHHHHHcC---CHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH----hcCHHHHHhHHHHHhcccccCChhh
Q 013559 141 GYNDFGDFYYAHG---ALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE----MGQFTHVTSYVSKAEQTPEALEPVT 213 (441)
Q Consensus 141 ~~~~la~~~~~~G---d~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~----~~~~~~~~~~~~ka~~~~~~~d~~~ 213 (441)
+++.||..|...| ++.+|+++|.+.-+........ ++.+..+... .+|+..+...+.++- .+++..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~---~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQR---VDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPAS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHH---HHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHH
Confidence 7899999999999 9999999999886654332221 1122222211 258888888888876 234443
Q ss_pred hhhHHHHHHHH-h--cccccHHHHHHHHHhcC
Q 013559 214 IAKLRCAAGLA-H--LEARKYKLAARKFLEVG 242 (441)
Q Consensus 214 ~~~l~~~~gl~-~--l~~r~y~~Aa~~Fl~~~ 242 (441)
...+ |.+ + ...+++.+|..+|..+.
T Consensus 251 ~~~L----g~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 251 WVSL----AQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHH----HHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHH----HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3322 332 2 45889999999988875
No 314
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=50.20 E-value=48 Score=26.40 Aligned_cols=43 Identities=7% Similarity=0.187 Sum_probs=38.4
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCe
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKI 392 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gv 392 (441)
+..++...+|+.+|++...+-+.|.+|...|-|.-..|..++-
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 4578999999999999999999999999999998887776664
No 315
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=49.63 E-value=43 Score=29.10 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=34.8
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCC-CCeEEEec
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSH-NKILYARH 397 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~-~gvv~~~~ 397 (441)
-.++...||+.+|++.+.+-+.+.+|..+|-|. .. .|.|...+
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~~i~i~d 209 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE----RVNQRTLLLKD 209 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----ESSSSEEEESC
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----EcCCCEEEEcC
Confidence 468899999999999999999999999999763 32 45566553
No 316
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.61 E-value=31 Score=35.22 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHhHHhHHHHHHHHcCCHHHHHHHHH-HHHhhhcCchhHHHHHHH
Q 013559 105 EAWCDSVDRRAEQRKEKLENELNAYRTNLIKES--IRMGYNDFGDFYYAHGALGDAFKSYV-RTRDYCTTSKHIIHMCMS 181 (441)
Q Consensus 105 ~~~~~~~~~~~~~~~~~Le~el~~~~~n~~~es--ir~~~~~la~~~~~~Gd~~~A~~~~~-~~r~~~~~~~~~~~~~l~ 181 (441)
+..+++.++.....+++|..++.+++.|.-..+ ++..+..|-.=+-..++.++...-|. .++......+.+++..+
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl- 130 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV- 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 455778888888888888888887754432211 22222333233344446666555555 34443333445555555
Q ss_pred HHHHHHHhcCHHHHHhHHHHHhcccc
Q 013559 182 AILVSIEMGQFTHVTSYVSKAEQTPE 207 (441)
Q Consensus 182 ~i~~~i~~~~~~~~~~~~~ka~~~~~ 207 (441)
-++.++.++.......+.|++..++
T Consensus 131 -snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 131 -QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446677777777777788776654
No 317
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=49.53 E-value=40 Score=28.88 Aligned_cols=63 Identities=8% Similarity=0.041 Sum_probs=38.4
Q ss_pred hHHhHHHHHHHHcCCH----------HHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHh-----------cCHHHHHhH
Q 013559 140 MGYNDFGDFYYAHGAL----------GDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEM-----------GQFTHVTSY 198 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~----------~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~-----------~~~~~~~~~ 198 (441)
.++..+|..+.+.|++ ++|+.+|.+....... ..+.++++-.+.... |+|+.+..+
T Consensus 37 ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~ 113 (158)
T 1zu2_A 37 DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQF 113 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHH
Confidence 4677788888887775 4888888887665432 233344443333333 466666666
Q ss_pred HHHHhcc
Q 013559 199 VSKAEQT 205 (441)
Q Consensus 199 ~~ka~~~ 205 (441)
+.||-.+
T Consensus 114 ~~kAl~l 120 (158)
T 1zu2_A 114 FQQAVDE 120 (158)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666553
No 318
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=49.21 E-value=94 Score=27.08 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=49.4
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
-+..||+.-...|+++-|.+||.+..++. .+.-++...||-+.+.+....+.. .+++ . .
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-----------~L~~Ly~~tg~~e~L~kla~iA~~---~g~~------n-~ 94 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQHSFD-----------KLSFLYLVTGDVNKLSKMQNIAQT---REDF------G-S 94 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHH-----------HHHHHHHHHTCHHHHHHHHHHHHH---TTCH------H-H
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHhCCHH-----------HHHHHHHHhCCHHHHHHHHHHHHH---CccH------H-H
Confidence 46789999999999999999999876663 122234445665555432222211 1121 1 1
Q ss_pred HHHHhcccccHHHHHHHHHhcC
Q 013559 221 AGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 221 ~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
....++..|++.++.+.|.++-
T Consensus 95 af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 95 MLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHCC
Confidence 2334567788888888887764
No 319
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=49.17 E-value=54 Score=26.37 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=36.1
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
..++...+|+.+|+|...+.+-+..|...|-+..+=....|..-..++
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCH
Confidence 568999999999999999999999999999986543223344444433
No 320
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=49.10 E-value=57 Score=26.87 Aligned_cols=42 Identities=7% Similarity=0.217 Sum_probs=36.0
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
...++...+|+.+|++...+-+.|.+|...|-|.-+-|..++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 103 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDR 103 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 467999999999999999999999999999999887766655
No 321
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=48.84 E-value=30 Score=27.76 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=37.2
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
+..++...+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 457999999999999999999999999999999877765544
No 322
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=48.59 E-value=49 Score=26.56 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=37.4
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
...++...+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 457999999999999999999999999999999887766554
No 323
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=48.31 E-value=16 Score=23.40 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.5
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHH
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEAL 376 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~L 376 (441)
.-.+...+|+.||+|...+.+|+..+
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 55789999999999999999988654
No 324
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=48.05 E-value=1.3e+02 Score=29.49 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHhHHhHHHHHHHHcCCHHHHHHHHHHH-HhhhcCchhHHHHHHH
Q 013559 105 EAWCDSVDRRAEQRKEKLENELNAYRTNL--IKESIRMGYNDFGDFYYAHGALGDAFKSYVRT-RDYCTTSKHIIHMCMS 181 (441)
Q Consensus 105 ~~~~~~~~~~~~~~~~~Le~el~~~~~n~--~~esir~~~~~la~~~~~~Gd~~~A~~~~~~~-r~~~~~~~~~~~~~l~ 181 (441)
...+++.++.+...+++|..+|.+++.+. +..-++..+..+..-+....|.++...-|..- +....-.+.+++.-+.
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44566777888888899999988774332 44455666777778888899999888877753 3333333444554444
Q ss_pred HHHHHHHhcCHHHHHhHHHHHhcccc
Q 013559 182 AILVSIEMGQFTHVTSYVSKAEQTPE 207 (441)
Q Consensus 182 ~i~~~i~~~~~~~~~~~~~ka~~~~~ 207 (441)
++.++..+.......+.|++..++
T Consensus 135 --~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 135 --RINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777778888877765
No 325
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=48.03 E-value=31 Score=31.13 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCC--CCeEEEecC
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSH--NKILYARHA 398 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~--~gvv~~~~~ 398 (441)
.+.+++.||..++..-+.|=..+ +-..||+.||||...+-+-|..|-.+|-+..+--+. .|+.+...+
T Consensus 6 ~~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~ 76 (239)
T 2di3_A 6 HESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAAP 76 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCCc
Confidence 46788999999999999999999 688999999999999999999999999886521344 577766543
No 326
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=47.92 E-value=39 Score=30.05 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=44.6
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhc--CchhHHHHHHHHHHHHHHhcCHH
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCT--TSKHIIHMCMSAILVSIEMGQFT 193 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~--~~~~~~~~~l~~i~~~i~~~~~~ 193 (441)
.+...=+|-+|+++.-.+||.+|.+.+......|. +.+++.-+...++-+.+..|...
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34445678899999999999999999999988885 33556666666777788888743
No 327
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=47.78 E-value=27 Score=29.56 Aligned_cols=39 Identities=13% Similarity=-0.064 Sum_probs=32.8
Q ss_pred HHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhH
Q 013559 137 SIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHI 175 (441)
Q Consensus 137 sir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~ 175 (441)
.-|+.+|-||-=+|+.|||++|.++...+.+.-....|.
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 467889999999999999999999999887776555553
No 328
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=47.78 E-value=52 Score=27.42 Aligned_cols=48 Identities=13% Similarity=-0.008 Sum_probs=37.0
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
=..++.+.+|+.+|+|+..+++.+..|...|-+..+=- ..|..-..+|
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~~p 75 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLKDL 75 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCCCh
Confidence 35799999999999999999999999999999876444 3444444444
No 329
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=47.75 E-value=87 Score=26.09 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=37.7
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
...++...||+.+|++...+-+.|.+|...|-|.-..|..++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 457999999999999999999999999999999887776655
No 330
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=47.58 E-value=96 Score=23.99 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=34.8
Q ss_pred hHHHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCc--hhHHHHHHHHHH
Q 013559 134 IKESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTS--KHIIHMCMSAIL 184 (441)
Q Consensus 134 ~~esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~--~~~~~~~l~~i~ 184 (441)
.++.-.+...+-|+-+|+.|+|.+|+-.+.++...+..+ +.+.+++++-.+
T Consensus 48 l~e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 48 LKEKKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 333334577888999999999999999999987665332 333445554433
No 331
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=47.44 E-value=47 Score=30.00 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=29.9
Q ss_pred cccHHhHHHHcCCChHHHHHHHHHHHHcCccc
Q 013559 352 SVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ 383 (441)
.++...||..+|++.+.+-+.|.+|..+|-|.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 57899999999999999999999999999875
No 332
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=47.43 E-value=74 Score=31.36 Aligned_cols=57 Identities=7% Similarity=0.051 Sum_probs=29.0
Q ss_pred hHHHHHHHHc----CCHHHHHHHHHHHHhhhcCchhHHHHHHHHH-HHHHHhcCHHHHHhHHHHHh
Q 013559 143 NDFGDFYYAH----GALGDAFKSYVRTRDYCTTSKHIIHMCMSAI-LVSIEMGQFTHVTSYVSKAE 203 (441)
Q Consensus 143 ~~la~~~~~~----Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i-~~~i~~~~~~~~~~~~~ka~ 203 (441)
+.||.+|..- +|+.+|.++|.+.- ...+. .-..++.+ --....+|+..+...+.++-
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~--a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA--PGYPA--SWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTH--HHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 6677766554 57777777776654 11111 11112221 10123567777776666654
No 333
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=47.28 E-value=88 Score=25.51 Aligned_cols=42 Identities=12% Similarity=0.264 Sum_probs=37.0
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
...++...+|+.+|++...+-+.|.+|...|-|.-+-|..++
T Consensus 56 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 56 FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 357999999999999999999999999999999877765554
No 334
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=46.74 E-value=73 Score=25.33 Aligned_cols=40 Identities=8% Similarity=0.118 Sum_probs=36.1
Q ss_pred cccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 352 SVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
.++...+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 7999999999999999999999999999999877665554
No 335
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=46.43 E-value=87 Score=25.71 Aligned_cols=42 Identities=12% Similarity=0.213 Sum_probs=35.8
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
...++...+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 467999999999999999999999999999999876655444
No 336
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=46.33 E-value=52 Score=25.07 Aligned_cols=68 Identities=9% Similarity=-0.001 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccC-C-hhhhhhHHHHHHHHhcccccHHHHHHHHHhcCc
Q 013559 176 IHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEAL-E-PVTIAKLRCAAGLAHLEARKYKLAARKFLEVGP 243 (441)
Q Consensus 176 ~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~-d-~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~~ 243 (441)
.+-|+.+.+..+..++|.++..-+.+|-...... . ..-...+...-|..+...|++..|...+-.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3568888999999999999999999887654311 1 112334556678888899999999988877753
No 337
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=46.05 E-value=38 Score=26.37 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=43.3
Q ss_pred HHHHhhccCchhhHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 013559 37 VEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIKKGENTQLFREVVKKID 94 (441)
Q Consensus 37 l~~y~~~y~g~~~i~rL~fi~~~~~~~~~~~~a~~~~~~~lk~t~~~~~Y~~~~~~l~ 94 (441)
||..|.+++.|.....-.|-.... --.-..--+.++++++++ +.+.|..+++.|+
T Consensus 35 LT~rI~~L~~Hlk~hkKD~~srRg--L~~lv~kRrrLL~YLk~~-d~~rY~~li~~Lg 89 (93)
T 3ulw_A 35 LTARIAELTEHLKIYKKDFSSRLG--LLKLVGQRKRLLSYLKRK-DYNSYSKLITELN 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH-CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcccchhhHHH--HHHHHHHHHHHHHHHHHc-CHHHHHHHHHHhC
Confidence 578888888888888888887776 444455556788999887 7999999999876
No 338
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=45.92 E-value=62 Score=28.11 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=33.8
Q ss_pred cccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 352 SVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
.++-+.||..+|++.+.+-+.|.+|..+|-|.- ..|.|...
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~ 227 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHA----RGKTVVLY 227 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE----CCCEEEEe
Confidence 478999999999999999999999999998852 23555554
No 339
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=45.85 E-value=1.1e+02 Score=26.72 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceE
Q 013559 332 ETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQAR 385 (441)
Q Consensus 332 ~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ak 385 (441)
..+....|.+++. ++. -..++...||+.+|+|...+-+.|..|...|-|...
T Consensus 15 k~l~d~~~~~IL~-~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILK-LLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHH-HHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHH-HHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3344445544443 444 368999999999999999999999999999999654
No 340
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=45.78 E-value=93 Score=25.20 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=37.3
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
+..++...+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 49 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 567999999999999999999999999999999877766554
No 341
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=45.69 E-value=97 Score=24.81 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=34.4
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
...++...+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~ 89 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDG 89 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCC
Confidence 567999999999999999999999999999999776555443
No 342
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=45.65 E-value=44 Score=29.18 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=35.5
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEec
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARH 397 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~ 397 (441)
-.++-..||..+|++.+.+-+.+.+|..+|-|.- ..|.|...+
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d 218 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISD 218 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESC
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcC
Confidence 3578999999999999999999999999998743 346666653
No 343
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=45.52 E-value=40 Score=27.33 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=32.9
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
+..++...+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 52 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp SSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 558999999999999999999999999999999766555444
No 344
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=45.50 E-value=66 Score=28.57 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=36.0
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
-.++...||..+|++.+.+-+.|.+|..+|-|.- ..|.|...++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~----~~~~i~I~d~ 235 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISI----HKKKITVHKP 235 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEECC-
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE----cCCEEEECCH
Confidence 4678899999999999999999999999998853 2466666644
No 345
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=45.43 E-value=79 Score=24.44 Aligned_cols=47 Identities=13% Similarity=-0.034 Sum_probs=39.8
Q ss_pred cccccHHhHHHHc-CCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 350 FVSVDLHMMANAF-KTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 350 Ys~I~L~~mA~~f-g~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
....+...+|+.+ |++...+-..|..|...|-|.-+.|..++-....
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y 83 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEY 83 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEE
Confidence 4678999999999 5999999999999999999998888766543333
No 346
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=45.38 E-value=96 Score=23.35 Aligned_cols=62 Identities=3% Similarity=-0.213 Sum_probs=41.0
Q ss_pred HHhHHHHHHHHcCC---HHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 141 GYNDFGDFYYAHGA---LGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 141 ~~~~la~~~~~~Gd---~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+..+|..++-.|+ ..+|...+.+....-.. + ....+.+....+..|+|..+..+..++-..
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--N-EAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677777765555 68888888887655322 1 334444555677788888888888777554
No 347
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=45.36 E-value=75 Score=25.52 Aligned_cols=47 Identities=4% Similarity=0.039 Sum_probs=37.2
Q ss_pred HhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 345 QYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 345 qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
.++.-+..++.+.+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 43 ~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~ 89 (140)
T 3hsr_A 43 MAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDE 89 (140)
T ss_dssp HHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred HHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCc
Confidence 34444678999999999999999999999999999999877766555
No 348
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=45.29 E-value=55 Score=24.67 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=30.8
Q ss_pred cccHHhHHHHcCCChHH-HHHHHHHHHHcCccc
Q 013559 352 SVDLHMMANAFKTSVAG-IEKELEALITDNQIQ 383 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~-~E~~L~~LI~~g~L~ 383 (441)
.++...+|+.+|++... +-+.|.+|...|-|.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 69999999999999999 999999999999997
No 349
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=45.19 E-value=88 Score=25.08 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=38.8
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC---eEEEe
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK---ILYAR 396 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g---vv~~~ 396 (441)
+..++...+|+.+|++...+-+.|.+|...|-|.-+-|..++ .|..+
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT 92 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLT 92 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEC
Confidence 456999999999999999999999999999999866655544 44444
No 350
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=45.06 E-value=83 Score=27.39 Aligned_cols=44 Identities=9% Similarity=0.168 Sum_probs=36.1
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
..++-+.||..+|++.+.+-+.+.+|..+|-|.- ..|.|...++
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~ 222 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLAL----DGKRIKIIDC 222 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee----CCCEEEEeCH
Confidence 4689999999999999999999999999998743 2456666643
No 351
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=45.00 E-value=52 Score=28.10 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=29.9
Q ss_pred cccHHhHHHHcCCChHHHHHHHHHHHHcCccc
Q 013559 352 SVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ 383 (441)
.++...||..+|++.+.+-+.+.+|..+|-|.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 58899999999999999999999999999874
No 352
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=44.94 E-value=46 Score=26.86 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=29.9
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
+..++.+.+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 457999999999999999999999999999999877666555
No 353
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.84 E-value=51 Score=24.13 Aligned_cols=44 Identities=7% Similarity=0.070 Sum_probs=36.8
Q ss_pred HHHHHhcccc--ccccHHhHHHHc-----CCChHHHHHHHHHHHHcCccce
Q 013559 341 KALIQYTHPF--VSVDLHMMANAF-----KTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 341 ~~i~qy~~pY--s~I~L~~mA~~f-----g~s~~~~E~~L~~LI~~g~L~a 384 (441)
..|.+++... ..++...+++.+ +++...+-+.|..|...|-|.-
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 4455565544 579999999999 9999999999999999999863
No 354
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=44.67 E-value=72 Score=32.32 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhc
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQ 204 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~ 204 (441)
.+..+-.-|++.|+.++|.+.+.++.+....+. ...+-.+|......|+++.|...+.+.+.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd--~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPE--EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 344455556666666666666666655443333 22334455555666666666666666554
No 355
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=44.44 E-value=33 Score=29.23 Aligned_cols=44 Identities=7% Similarity=0.059 Sum_probs=39.3
Q ss_pred HHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc
Q 013559 339 RNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 339 R~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ 383 (441)
|.+.+..|++ .-+++...+|+++|+|-..+.-.|-.|=++|.+.
T Consensus 12 rk~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~ 55 (165)
T 2vxz_A 12 RLRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVT 55 (165)
T ss_dssp HHHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceE
Confidence 3467778889 9999999999999999999999999999999884
No 356
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=43.92 E-value=59 Score=27.31 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCC
Q 013559 332 ETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHN 390 (441)
Q Consensus 332 ~~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~ 390 (441)
..|-...|.+++.... ...++...||+.+|++...+-.-|..|...|-|..+-|...
T Consensus 53 ~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 53 EVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRF 109 (151)
T ss_dssp HHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCE
Confidence 3444566666665543 46799999999999999999999999999999988766554
No 357
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=43.84 E-value=47 Score=26.67 Aligned_cols=43 Identities=7% Similarity=0.091 Sum_probs=37.7
Q ss_pred ccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 349 PFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 349 pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
....++...+|+.+|++...+-+.|.+|...|-|.-+-|..++
T Consensus 48 ~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 48 DESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp HSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 3567999999999999999999999999999999887775554
No 358
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=43.70 E-value=5.2 Score=32.70 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=35.8
Q ss_pred HHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEec
Q 013559 339 RNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARID 387 (441)
Q Consensus 339 R~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID 387 (441)
|.-++.|++.|=.+=.|++++-.=-=-...+|..|..|...|+|..|||
T Consensus 42 r~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~li~laq~Gql~~ki~ 90 (116)
T 2hvu_A 42 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 90 (116)
T ss_dssp SSTTTTTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCBC
T ss_pred HHHHHHHHcCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 3446677777777767776654322234579999999999999999886
No 359
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=43.60 E-value=93 Score=25.08 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=36.7
Q ss_pred ccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 349 PFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 349 pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
....++...+|+.+|++...+-+.|..|...|-|.-+ ..+.+..+
T Consensus 19 ~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT 63 (142)
T 1on2_A 19 EKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLT 63 (142)
T ss_dssp HHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEEC
T ss_pred hcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEc
Confidence 3467999999999999999999999999999988654 23455554
No 360
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=43.19 E-value=95 Score=25.23 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=35.9
Q ss_pred hccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 346 YTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 346 y~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
++..+..++...+|+.+|++...+-+.|.+|...|-|.-..|..++
T Consensus 51 ~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 51 CLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDK 96 (155)
T ss_dssp HHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-----
T ss_pred HHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcC
Confidence 4444668999999999999999999999999999999765544433
No 361
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=43.03 E-value=5.8 Score=32.98 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=35.3
Q ss_pred HHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEec
Q 013559 339 RNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARID 387 (441)
Q Consensus 339 R~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID 387 (441)
|..++.|++.|=.+-.|++++=.=-=-...||..|..|...|+|.+||+
T Consensus 42 r~~iL~qiL~peAreRL~rI~lVkPekA~~VE~~Li~lAq~Gql~~kVs 90 (127)
T 2jxn_A 42 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 90 (127)
T ss_dssp TTHHHHTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCBC
T ss_pred HHHHHHHHcCHHHHHHHhcccccCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 3456777777776666666654322224579999999999999999885
No 362
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=42.79 E-value=1.2e+02 Score=23.69 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=36.6
Q ss_pred HHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEec
Q 013559 339 RNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARID 387 (441)
Q Consensus 339 R~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID 387 (441)
|.+++....+ ...++..+|+.+|++...+-+.|..|...|-+.-.-|
T Consensus 34 ~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~ 80 (119)
T 2lkp_A 34 RLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRA 80 (119)
T ss_dssp HHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 4444444433 4689999999999999999999999999998865433
No 363
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=41.92 E-value=1.2e+02 Score=24.92 Aligned_cols=35 Identities=23% Similarity=0.095 Sum_probs=31.3
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceE
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQAR 385 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ak 385 (441)
..++...+|+.||+|...+-+.|..|...|-|.-+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56889999999999999999999999999977544
No 364
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=41.53 E-value=24 Score=28.71 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=30.8
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCc-cc
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQ-IQ 383 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~-L~ 383 (441)
+-.++..+|+.-|++...++..|+.+|.+|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 6789999999999999999999999999995 64
No 365
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=41.33 E-value=31 Score=24.39 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=28.9
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCcc
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQI 382 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L 382 (441)
--++++..|+.+|++.+++-+-|.+|=..|-|
T Consensus 24 GildI~~~a~kygV~kdeV~~~LrrLe~KGLI 55 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLI 55 (59)
T ss_dssp SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCe
Confidence 45899999999999999999999999888866
No 366
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=41.26 E-value=36 Score=28.35 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=36.6
Q ss_pred cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 354 DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 354 ~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
+++.+|+.+|+|+.++++-+..|...|-|...=. .-|..-..+|
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar~p 68 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLKKDP 68 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEESSCG
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceecCCH
Confidence 9999999999999999999999999999876544 4555555544
No 367
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=40.92 E-value=32 Score=32.89 Aligned_cols=45 Identities=16% Similarity=-0.036 Sum_probs=38.5
Q ss_pred HHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc
Q 013559 339 RNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 339 R~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ 383 (441)
|...+.+++.....++.+.||+.||+|...+-+.|..|-..|-+-
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 455666777777889999999999999999999999998888663
No 368
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=40.59 E-value=1.4e+02 Score=23.76 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=37.1
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
..++...+|+.+|++...+-+-|..|...|-+.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 57999999999999999999999999999999887766654
No 369
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=40.59 E-value=36 Score=27.86 Aligned_cols=47 Identities=6% Similarity=0.094 Sum_probs=38.1
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccce--EecCCCC---eEEEe
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQA--RIDSHNK---ILYAR 396 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a--kID~~~g---vv~~~ 396 (441)
...++...+|+.+|++...+-+.|.+|+..|-|.- +-|..++ .+..+
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT 104 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLS 104 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEEC
Confidence 45699999999999999999999999999999987 6665555 44444
No 370
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=40.28 E-value=36 Score=27.86 Aligned_cols=42 Identities=7% Similarity=0.041 Sum_probs=34.4
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
+..++...+|+.+|++...+-+.|.+|...|-|.-..|..++
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 567999999999999999999999999999999876655444
No 371
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=40.17 E-value=83 Score=25.79 Aligned_cols=42 Identities=5% Similarity=0.181 Sum_probs=32.9
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
...++...+|+.+|++...+-+.|.+|+..|-|.-+-|..++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 568999999999999999999999999999999766554444
No 372
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=39.45 E-value=54 Score=26.76 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=35.4
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC---eEEEe
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK---ILYAR 396 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g---vv~~~ 396 (441)
+..++...+|+.+|++...+-+.|.+|...|-|.-+-|..++ .|..+
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 102 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLT 102 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeEC
Confidence 577999999999999999999999999999999876665554 44444
No 373
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=39.45 E-value=47 Score=29.61 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=34.9
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
-.++...||..+|++.+.+-+.+.+|..+|-|.- ..|.+...
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~ 217 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDK----KKNKIIVY 217 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSEEEES
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe----CCCEEEEe
Confidence 4679999999999999999999999999998743 34555555
No 374
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=39.39 E-value=75 Score=26.22 Aligned_cols=47 Identities=6% Similarity=0.135 Sum_probs=37.5
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC---eEEEe
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK---ILYAR 396 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g---vv~~~ 396 (441)
+..++...+|+.+|++...+-+.|.+|...|-|.-+-|..++ .|..+
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT 114 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLT 114 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeEC
Confidence 358999999999999999999999999999999776655444 45554
No 375
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=38.95 E-value=62 Score=27.59 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=42.3
Q ss_pred HHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 337 QIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 337 ~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
-+|...+... .+=..++.+.||+.+|+|..++++-+..|-..|-+..+=-..-|..-..+|
T Consensus 14 Alr~l~~La~-~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (162)
T 3k69_A 14 AVHSILYLDA-HRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLAL 74 (162)
T ss_dssp HHHHHHHHHT-TTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCG
T ss_pred HHHHHHHHHh-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEecCCh
Confidence 3444444433 233569999999999999999999999999999886553333344444433
No 376
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=38.92 E-value=35 Score=33.54 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=37.9
Q ss_pred HHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 343 LIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 343 i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
+..++...-.++.+.+++.+|+|...+.+.|.+|+..|-|. ++....+.++..
T Consensus 302 ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~-~~~~gR~~~y~~ 354 (373)
T 3eqx_A 302 LVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLE-EVQSGKEKLFVH 354 (373)
T ss_dssp HHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE-EC--CCSCEEEC
T ss_pred HHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEE-EeCCCCceEeeh
Confidence 33444334458899999999999999999999999999985 333333444433
No 377
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=38.33 E-value=30 Score=30.32 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.2
Q ss_pred cccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 352 SVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
..++..||+.||++...+-+.|..|-..|-|.-
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEe
Confidence 489999999999999999999999999998843
No 378
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=38.31 E-value=47 Score=26.81 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=34.3
Q ss_pred HhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 345 QYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 345 qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
........+++..+|+.+|++...+-+.|..|...|-|.-
T Consensus 24 ~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 24 RYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp HHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 3334567899999999999999999999999999997754
No 379
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=38.28 E-value=1.6e+02 Score=31.17 Aligned_cols=103 Identities=6% Similarity=0.010 Sum_probs=66.8
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhc---------Cch----------hHHHHHHHHHHHHHHhcCHHHHHhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCT---------TSK----------HIIHMCMSAILVSIEMGQFTHVTSYVSK 201 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~---------~~~----------~~~~~~l~~i~~~i~~~~~~~~~~~~~k 201 (441)
.++.++.+....|+++.|.+.|.++.+... .+. ....+.+..+++....|+.+.+...+.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 457889999999999999999998866421 010 1122445556666667888888888888
Q ss_pred HhcccccCChhhhhhHHHHHHHHhcc-cccHHHHHHHHHhcCcCCCC
Q 013559 202 AEQTPEALEPVTIAKLRCAAGLAHLE-ARKYKLAARKFLEVGPDLGN 247 (441)
Q Consensus 202 a~~~~~~~d~~~~~~l~~~~gl~~l~-~r~y~~Aa~~Fl~~~~t~~~ 247 (441)
|........| .+.+..+..... .+++..|...|-.....++.
T Consensus 460 A~~~~~~~~~----~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 460 CRRLKKLVTP----DIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHTGGGSCT----HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCh----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 8766221223 233344444333 45688988888887765543
No 380
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=38.15 E-value=1.6e+02 Score=24.00 Aligned_cols=65 Identities=5% Similarity=-0.042 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHHHHHHhcccccHHHHHHHHH
Q 013559 171 TSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFL 239 (441)
Q Consensus 171 ~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl 239 (441)
+...++++.|.+++ .++-..+..-+.=++++....+|..+-....+-|+.+.-.|+|..|.+++=
T Consensus 34 s~~~~F~yAw~Lv~----S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 34 SKSTQFEYAWCLVR----TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp CHHHHHHHHHHHTT----SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44455555555544 345555555555555555433354444445556777777777777755443
No 381
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=37.82 E-value=1.4e+02 Score=24.84 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=35.8
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC---eEEEe
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK---ILYAR 396 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g---vv~~~ 396 (441)
...++...||+.+|++...+-+.|.+|...|-|.-.-|..++ .|..+
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 115 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLT 115 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEEC
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEEC
Confidence 346999999999999999999999999999999877655444 45554
No 382
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=37.69 E-value=1.7e+02 Score=28.69 Aligned_cols=61 Identities=10% Similarity=-0.119 Sum_probs=42.0
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
++..+|-.+.-.|++++|...+.+..... +. .......-.+....|+++.+...+.+|-.+
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLE--MS--WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 56667777777799999999888887764 22 122223344566788888888888877665
No 383
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=37.65 E-value=37 Score=33.23 Aligned_cols=34 Identities=6% Similarity=-0.043 Sum_probs=30.6
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
-.++++.+++.+|+|...+.+.|.+|+..|-|.-
T Consensus 310 p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~ 343 (373)
T 2qc0_A 310 PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEE 343 (373)
T ss_dssp SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEE
Confidence 3478889999999999999999999999999963
No 384
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=37.26 E-value=37 Score=27.51 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=36.3
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
...++...+|+.+|++...+-+.|.+|...|-+.-..|..++
T Consensus 52 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 52 HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCC
Confidence 457999999999999999999999999999999766655443
No 385
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=37.24 E-value=34 Score=33.11 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=36.0
Q ss_pred hccccccccHHhHHHHc--CCChHHHHHHHHHHHHcCccc
Q 013559 346 YTHPFVSVDLHMMANAF--KTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 346 y~~pYs~I~L~~mA~~f--g~s~~~~E~~L~~LI~~g~L~ 383 (441)
|++....|+.+.+|+.| |+|+..+-+.+..|=..|.|.
T Consensus 30 yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~ 69 (338)
T 1stz_A 30 YIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIY 69 (338)
T ss_dssp HHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 89989999999999999 999999999999999999884
No 386
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=37.01 E-value=32 Score=27.62 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=38.5
Q ss_pred HHHHHhccccccccHHhHHHHc--CCChHHHHHHHHHHHHcCccceE
Q 013559 341 KALIQYTHPFVSVDLHMMANAF--KTSVAGIEKELEALITDNQIQAR 385 (441)
Q Consensus 341 ~~i~qy~~pYs~I~L~~mA~~f--g~s~~~~E~~L~~LI~~g~L~ak 385 (441)
+.|..++.....++...||+.+ |+|...+-+-|..|...|-|...
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 3344556666799999999999 99999999999999999999874
No 387
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=36.99 E-value=45 Score=25.31 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcC
Q 013559 338 IRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDN 380 (441)
Q Consensus 338 iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g 380 (441)
.+..++..|+.. ...++..+|..||++...+-+|+..+-..|
T Consensus 10 ~k~~~v~~~~~~-~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 10 FKRDAVALYENS-DGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp HHHHHHHHHTTG-GGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHc-CCChHHHHHHHHCcCHHHHHHHHHHHhhcC
Confidence 345566666432 157899999999999999999998875544
No 388
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=36.66 E-value=1.4e+02 Score=26.99 Aligned_cols=38 Identities=3% Similarity=0.074 Sum_probs=34.1
Q ss_pred hccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc
Q 013559 346 YTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 346 y~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ 383 (441)
|.-.+-..+.+.+|+.+|+++..++..|.+|...|-+.
T Consensus 172 ~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~ 209 (232)
T 2qlz_A 172 YLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVK 209 (232)
T ss_dssp HHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE
T ss_pred HHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE
Confidence 44456899999999999999999999999999999886
No 389
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=36.27 E-value=1.5e+02 Score=23.63 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=38.4
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEE
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILY 394 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~ 394 (441)
... +.+.+|+.+|++...+-+.|.+|...|-+.-+-|..++-..
T Consensus 49 ~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~ 92 (144)
T 3f3x_A 49 EPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIV 92 (144)
T ss_dssp SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred CCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceE
Confidence 344 99999999999999999999999999999988888776433
No 390
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=35.89 E-value=56 Score=25.97 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecC
Q 013559 334 LYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDS 388 (441)
Q Consensus 334 l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~ 388 (441)
+-...|.+++..+.. ...+...+|+.+|+|...+-+.|..|...|-+..+-|.
T Consensus 18 L~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 18 LADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG 70 (118)
T ss_dssp HSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECS
T ss_pred hCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC
Confidence 334455555554332 35788999999999999999999999999999876553
No 391
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=35.88 E-value=1.7e+02 Score=23.60 Aligned_cols=47 Identities=11% Similarity=-0.070 Sum_probs=40.5
Q ss_pred cccccHHhHHHHc-CCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 350 FVSVDLHMMANAF-KTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 350 Ys~I~L~~mA~~f-g~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
....+...|++.+ |++...+-+.|..|...|-|.-+.|..++-....
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y 93 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEY 93 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEE
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEE
Confidence 5678999999999 7999999999999999999998888776644333
No 392
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=35.66 E-value=55 Score=24.62 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=27.9
Q ss_pred HHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHH
Q 013559 337 QIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALI 377 (441)
Q Consensus 337 ~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI 377 (441)
.-|.-+...| +.-.+...+|+.+|+|+..+...+.+..
T Consensus 41 ~~r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 41 EHRAVIQRSY---YRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3333344446 6777999999999999999888776643
No 393
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=35.46 E-value=77 Score=25.73 Aligned_cols=43 Identities=5% Similarity=0.177 Sum_probs=33.8
Q ss_pred ccccccHHhHHHHcCCChHHHHHHHHHHHHcCccce--EecCCCC
Q 013559 349 PFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQA--RIDSHNK 391 (441)
Q Consensus 349 pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a--kID~~~g 391 (441)
....++...+|+.+|++...+-+.|.+|...|-|.- ..|..++
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~ 92 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQ 92 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC---------
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCC
Confidence 468899999999999999999999999999999976 2355554
No 394
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=35.11 E-value=48 Score=32.43 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCcc
Q 013559 337 QIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382 (441)
Q Consensus 337 ~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L 382 (441)
....+.+.+++..+..+|-..+|+.+|+|...+-+-+.+|+..|-+
T Consensus 15 ~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i 60 (406)
T 1z6r_A 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLV 60 (406)
T ss_dssp HHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 3444567777788899999999999999999999999999998866
No 395
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=34.95 E-value=1.3e+02 Score=24.88 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=38.0
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
....+.+.|++.+|++...+-+.|..|...|-|.-+.+..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 467899999999999999999999999999999988876665
No 396
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=34.72 E-value=47 Score=28.18 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=31.6
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccce-EecCCCCeEEEe
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQA-RIDSHNKILYAR 396 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a-kID~~~gvv~~~ 396 (441)
.-+++...|+.||++... +-+||.+|+|-| |++ +...+.
T Consensus 30 ~~LTv~EVAe~LgVs~sr----V~~LIr~G~L~AVr~G---r~~rVP 69 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSK----VAQQLREGHLVAVRRA---GGVVIP 69 (148)
T ss_dssp CEEEHHHHHHHHTCCHHH----HHHHHHTTSCCCEEET---TEEEEE
T ss_pred ceEcHHHHHHHhCCCHHH----HHHHHHCCCceEEEEC---CEEEec
Confidence 568999999999999887 567899999987 886 555443
No 397
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=34.64 E-value=52 Score=25.41 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.6
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~ 375 (441)
...++++.||+.+|+|+..+.+...+
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45699999999999999887776654
No 398
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.11 E-value=62 Score=22.74 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=24.6
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALIT 378 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~ 378 (441)
+.-.+...+|+.+|+|+..+...+.+...
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45669999999999999999988887653
No 399
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=34.02 E-value=1.6e+02 Score=22.52 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=31.4
Q ss_pred ccHHhHHHHcCCChHHHHHHHHHHHHcCccceE
Q 013559 353 VDLHMMANAFKTSVAGIEKELEALITDNQIQAR 385 (441)
Q Consensus 353 I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ak 385 (441)
++...+|..+|++...+.+.+-.|...|-|.-.
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999999999999765
No 400
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=33.68 E-value=87 Score=27.59 Aligned_cols=43 Identities=9% Similarity=0.225 Sum_probs=35.5
Q ss_pred cccHHhHHHHcCCCh-HHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 352 SVDLHMMANAFKTSV-AGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~-~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
.++...||..+|++. +.+-+.|.+|..+|-|.- ..|.|...++
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~----~~~~i~I~d~ 212 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY----KNSCFYVQNL 212 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe----cCCEEEEeCH
Confidence 688899999999999 899999999999998743 3566776643
No 401
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=33.58 E-value=32 Score=28.08 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=31.6
Q ss_pred ccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecC
Q 013559 353 VDLHMMANAFKTSVAGIEKELEALITDNQIQARIDS 388 (441)
Q Consensus 353 I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~ 388 (441)
++.+.||+.+|+++..+.+.|..|+..|-|.=+-|.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC--
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEE
Confidence 799999999999999999999999999988655443
No 402
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.38 E-value=3.5e+02 Score=26.69 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=58.0
Q ss_pred HHHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH-hcCHHHHHhHHHHHhcccc--cCCh-
Q 013559 136 ESIRMGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIE-MGQFTHVTSYVSKAEQTPE--ALEP- 211 (441)
Q Consensus 136 esir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~-~~~~~~~~~~~~ka~~~~~--~~d~- 211 (441)
.+..++...+.+.+++.|+++...+.+.-+....+..++.+.-....+--.+. ..+.+ ....+.....+-. .+..
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d-~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLD-LNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHHHCCSSSSSCCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHhccchH
Confidence 34456677888999999999998887766544444334333222111111111 11111 1112222222222 1111
Q ss_pred --hhhhhHHHHHHHHhcccccHHHHHHHHHhcC
Q 013559 212 --VTIAKLRCAAGLAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 212 --~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~~ 242 (441)
.-++++...-+-.+...|+|.+|+....+..
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~ 164 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQ 164 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1255666666667888999999999888865
No 403
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=33.35 E-value=69 Score=27.51 Aligned_cols=43 Identities=7% Similarity=0.176 Sum_probs=32.3
Q ss_pred hHHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 013559 140 MGYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSA 182 (441)
Q Consensus 140 ~~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~ 182 (441)
-.+..+|+|-.+.|++..|.+.+.+....|.-+.+.+++.+.-
T Consensus 95 Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 95 FVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 3567778888888888888888888888777777766655443
No 404
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=32.72 E-value=85 Score=33.33 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=47.3
Q ss_pred HHhHHHHHHHHcCC-HHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhccc
Q 013559 141 GYNDFGDFYYAHGA-LGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTP 206 (441)
Q Consensus 141 ~~~~la~~~~~~Gd-~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~ 206 (441)
.+...|.+.+.+|+ ++.|.+.|.+....|..... +.+..+...+..|+...+...+.++-...
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~---~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKYFATDGE---YINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH---HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 45677777777764 89999999998888765443 34455666677899999999999886643
No 405
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=32.37 E-value=73 Score=27.90 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=34.2
Q ss_pred cccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 352 SVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
.++-..||..+|++.+.+-+.+.+|..+| | .+ ..|.|...++
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~--~~~~i~I~d~ 219 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V--TV--KRNHAEIEDI 219 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--EC--CTTEEEESCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--Ee--eCCEEEEcCH
Confidence 35678999999999999999999999999 6 33 4577777643
No 406
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=32.29 E-value=38 Score=25.09 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.9
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~ 375 (441)
|=+.++..+|..+|++.+++|+-|..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 66789999999999999999987754
No 407
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=32.15 E-value=61 Score=24.22 Aligned_cols=27 Identities=4% Similarity=-0.184 Sum_probs=23.2
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHH
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALI 377 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI 377 (441)
...++..+|..||++...+-+|+.+.=
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357899999999999999999997653
No 408
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=31.62 E-value=22 Score=30.36 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALIT 378 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~ 378 (441)
...++-+.||..+|++.+.+-+.+.++|.
T Consensus 166 ~~~~t~~~iA~~lG~sretlsR~l~~l~~ 194 (194)
T 3dn7_A 166 IQRVPQYLLASYLGFTPEYLSEIRKKYIS 194 (194)
T ss_dssp -----------------------------
T ss_pred HHHCCHHHHHHHhCCCHHHHHHHHHhhcC
Confidence 45688999999999999999888888763
No 409
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.38 E-value=69 Score=36.17 Aligned_cols=100 Identities=9% Similarity=0.001 Sum_probs=63.2
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHhhh--------------------cCchhHHHHHHHHHHHHHHhcCHHHHHhHHHH
Q 013559 142 YNDFGDFYYAHGALGDAFKSYVRTRDYC--------------------TTSKHIIHMCMSAILVSIEMGQFTHVTSYVSK 201 (441)
Q Consensus 142 ~~~la~~~~~~Gd~~~A~~~~~~~r~~~--------------------~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~k 201 (441)
.+-+|..|..+|++++|.++|.+.-.-. ....-...++++++++-=..+-++++......
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3778999999999999999998641100 00011224566676666566778888777777
Q ss_pred HhcccccCChhhhhhHHHHHHHHhcccccHHHHHHHHHhc
Q 013559 202 AEQTPEALEPVTIAKLRCAAGLAHLEARKYKLAARKFLEV 241 (441)
Q Consensus 202 a~~~~~~~d~~~~~~l~~~~gl~~l~~r~y~~Aa~~Fl~~ 241 (441)
|-+.....++..+..+..---..++..++|.+|....+..
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 6554444565555443322233567778888887776654
No 410
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=31.00 E-value=87 Score=23.81 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=21.1
Q ss_pred cccHHhHHHHcCCChHHHHHHHHH
Q 013559 352 SVDLHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~~E~~L~~ 375 (441)
.++++.+|+.+|+|+..+.+.+.+
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 789999999999999988777655
No 411
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=30.78 E-value=52 Score=32.54 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCcc
Q 013559 336 DQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382 (441)
Q Consensus 336 ~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L 382 (441)
+....+.+.+++.....+|-..+|+.+|+|...+-+-+.+|+..|-+
T Consensus 37 r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli 83 (429)
T 1z05_A 37 KQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLI 83 (429)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 33444556677777889999999999999999999999999999865
No 412
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=30.72 E-value=4.2e+02 Score=26.49 Aligned_cols=94 Identities=9% Similarity=0.092 Sum_probs=66.5
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHH
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCA 220 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~ 220 (441)
.+..+-+.|.+.|++++|.+.+.++......++ ...+-.+|......|+++.+...+.+.... +..|+.. .|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--G~~Pd~~----ty 178 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--LRSYGPALFGFCRKGDADKAYEVDAHMVES--EVVPEEP----EL 178 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCCCCHH----HH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--cceehHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCCHH----HH
Confidence 567788899999999999999999987755554 334455677777889999998887776542 2233222 23
Q ss_pred HHH--HhcccccHHHHHHHHHhcC
Q 013559 221 AGL--AHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 221 ~gl--~~l~~r~y~~Aa~~Fl~~~ 242 (441)
..+ .+...|++.+|.+.|-+.-
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHH
Confidence 333 2345788999988888764
No 413
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=30.54 E-value=1e+02 Score=23.16 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCcc
Q 013559 336 DQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382 (441)
Q Consensus 336 ~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L 382 (441)
..+.++++.-+=+.=+-++-..+|+..|++-.++.+-|-+|=.+|+|
T Consensus 18 ~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 18 GHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 34455555555555678999999999999999999999999999987
No 414
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=30.40 E-value=2.5e+02 Score=23.78 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=39.2
Q ss_pred ccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 349 PFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 349 pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
|...++.+.+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 4568999999999999999999999999999999888877766
No 415
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=29.97 E-value=17 Score=35.49 Aligned_cols=42 Identities=5% Similarity=0.048 Sum_probs=37.6
Q ss_pred HHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCcc
Q 013559 340 NKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382 (441)
Q Consensus 340 ~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L 382 (441)
.+.+.+++. ...+|-..+|+.+|+|...+-+-+.+|+.+|-|
T Consensus 22 ~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli 63 (380)
T 2hoe_A 22 ISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIV 63 (380)
T ss_dssp CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 345677888 899999999999999999999999999999866
No 416
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=29.81 E-value=80 Score=24.29 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=22.1
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~ 375 (441)
...++++.||+.+|+|+..+.+...+
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999988877755
No 417
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=29.73 E-value=73 Score=30.06 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=35.6
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDS 388 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~ 388 (441)
...++.+.+|+.||+|...+-+.|..+=..|.+.=||..
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g 57 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINY 57 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecC
Confidence 677999999999999999999999999999999877754
No 418
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=29.71 E-value=76 Score=24.66 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=33.1
Q ss_pred HHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccc
Q 013559 338 IRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 338 iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~ 383 (441)
.|.+++.-+. .-.+...+|..||++...+-+|+..+-..|.+.
T Consensus 22 ~r~~i~~~~~---~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~ 64 (128)
T 1pdn_C 22 IRLKIVEMAA---DGIRPCVISRQLRVSHGCVSKILNRYQETGSIR 64 (128)
T ss_dssp HHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcc
Confidence 3445554442 457889999999999999999999988777653
No 419
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=29.41 E-value=1.7e+02 Score=24.11 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=35.5
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCe
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKI 392 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gv 392 (441)
..++...||+.+|++...+-+.|.+|...|-|.-+-|..++-
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 102 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRR 102 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCC
Confidence 479999999999999999999999999999999888887774
No 420
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=28.75 E-value=11 Score=32.15 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 335 YDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 335 ~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
++.++.+++. .+.|-.+++...+|+.||+|...+-+-|..|..+|-|..
T Consensus 11 ~d~l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3445556666 778889999999999999999999999999999998863
No 421
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.68 E-value=1.2e+02 Score=24.46 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhHHhHHHHHHHHcCCHHHHHHHHHHH
Q 013559 114 RAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKSYVRT 165 (441)
Q Consensus 114 ~~~~~~~~Le~el~~~~~n~~~esir~~~~~la~~~~~~Gd~~~A~~~~~~~ 165 (441)
+..++++.|-..|+ ++.+.+.+...+..++. ..+.|||..|.+....+
T Consensus 40 D~~KRL~~LfdkLn---~~~Ls~~v~~~L~~l~~-al~~~dy~~A~~ih~~l 87 (118)
T 2yru_A 40 DISRRLALLREQWA---GGKLSIPVKKRMALLVQ-ELLHHQWDAADDIHRSL 87 (118)
T ss_dssp HHHHHHHHHHHHHH---HTCSCHHHHHHHHHHHH-HHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Confidence 34455555655554 55567888888999988 56788999999988765
No 422
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=28.58 E-value=99 Score=21.57 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=26.1
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHc
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITD 379 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~ 379 (441)
+.-.+...+|+.+|+|+..+...+.+.+..
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 478899999999999999999988876643
No 423
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=28.48 E-value=23 Score=27.44 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh
Q 013559 70 LRMAYDEIKKGENTQLFREVVKKID 94 (441)
Q Consensus 70 ~~~~~~~lk~t~~~~~Y~~~~~~l~ 94 (441)
-+.++++++++ |.+.|..+++.|+
T Consensus 63 RrkLL~YLk~~-d~~rY~~li~~Lg 86 (89)
T 2vqe_O 63 RRRLLRYLQRE-DPERYRALIEKLG 86 (89)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CHHHHHHHHHHhC
Confidence 34678888877 6899999999876
No 424
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=28.34 E-value=69 Score=24.64 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=21.5
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHH
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~ 375 (441)
..++++.||+.+|+|+..+.+...+
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 5799999999999999988776654
No 425
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.00 E-value=2.1e+02 Score=22.22 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=22.9
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 013559 142 YNDFGDFYYAHGALGDAFKSYVRTRDYC 169 (441)
Q Consensus 142 ~~~la~~~~~~Gd~~~A~~~~~~~r~~~ 169 (441)
+-..|+.+...|.|++|++|....-.|.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3467888999999999999998876554
No 426
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=27.95 E-value=21 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=21.5
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHH
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALI 377 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI 377 (441)
+.-.+..+|+.||++++++-.+|...|
T Consensus 53 ~~~~~~~ia~~l~v~~~~l~~~l~~~~ 79 (80)
T 3kz3_A 53 NAYNAALLAKILKVSVEEFSPSIAREI 79 (80)
T ss_dssp CHHHHHHHHHHHTSCGGGTCHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHhHHHHhhC
Confidence 344677899999999998888887765
No 427
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=27.66 E-value=74 Score=26.10 Aligned_cols=45 Identities=4% Similarity=0.146 Sum_probs=37.7
Q ss_pred cccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCe
Q 013559 348 HPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKI 392 (441)
Q Consensus 348 ~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gv 392 (441)
.+...++.+.+|+.+|++...+-+.|.+|...|-|.-+-|..++-
T Consensus 47 ~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR 91 (147)
T 4b8x_A 47 SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGR 91 (147)
T ss_dssp SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCc
Confidence 455679999999999999999999999999999999888887763
No 428
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=27.61 E-value=1.2e+02 Score=24.69 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=33.7
Q ss_pred ccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 349 PFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 349 pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
....++...+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~ 101 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDR 101 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC------
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCC
Confidence 3467999999999999999999999999999999765554443
No 429
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=27.33 E-value=90 Score=22.02 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=31.1
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccce
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQA 384 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~a 384 (441)
+-+|-...|..||+|.+..-.-|.+|..+|.|.-
T Consensus 17 QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 17 QGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred ccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 5688899999999999999999999999999853
No 430
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=27.20 E-value=1e+02 Score=26.30 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=29.0
Q ss_pred HHHHhHHhHHHHHHHHcC-----------CHHHHHHHHHHHHhhhcC
Q 013559 136 ESIRMGYNDFGDFYYAHG-----------ALGDAFKSYVRTRDYCTT 171 (441)
Q Consensus 136 esir~~~~~la~~~~~~G-----------d~~~A~~~~~~~r~~~~~ 171 (441)
+.--.+++.+|..|.+.| ++++|.++|.+..+.-.+
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 334458899999999875 899999999998777544
No 431
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=27.03 E-value=43 Score=25.80 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=29.6
Q ss_pred HHHHhhccCchhhHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 013559 37 VEAYASLYQGRTKITRLMFIADHCDIASMQLEALRMAYDEIKKGENTQLFREVVKKID 94 (441)
Q Consensus 37 l~~y~~~y~g~~~i~rL~fi~~~~~~~~~~~~a~~~~~~~lk~t~~~~~Y~~~~~~l~ 94 (441)
||..|.+++.|.....-.|-.... --.-..--+.++++++++ +.+.|..+++.|+
T Consensus 31 LT~rI~~L~~Hlk~hkKD~~srRg--L~~lv~kRrrLL~YLk~~-d~~rY~~li~~Lg 85 (88)
T 4a5u_B 31 LTAQINHLQGHFAEHKKDHHSRRG--LLRMVSQRRKLLDYLKRK-DVARYTQLIERLG 85 (88)
T ss_dssp HHHHHHHHHHHC--------CHHH--HHHHHHHHHHHHHHHHHH-CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcccchhhHHH--HHHHHHHHHHHHHHHHHc-CHHHHHHHHHHhC
Confidence 455566666555544444433333 222233345688888877 7899999998875
No 432
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.94 E-value=74 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=21.5
Q ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 013559 142 YNDFGDFYYAHGALGDAFKSYVRTRD 167 (441)
Q Consensus 142 ~~~la~~~~~~Gd~~~A~~~~~~~r~ 167 (441)
...+|+=|.-.|||+.|..+|..+.+
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45678889999999999999997643
No 433
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.90 E-value=3.6e+02 Score=27.04 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHhHHhHHHHHHHHcCCHHHHHHHHHHH-HhhhcCchhHHHHHHH
Q 013559 105 EAWCDSVDRRAEQRKEKLENELNAYRTN--LIKESIRMGYNDFGDFYYAHGALGDAFKSYVRT-RDYCTTSKHIIHMCMS 181 (441)
Q Consensus 105 ~~~~~~~~~~~~~~~~~Le~el~~~~~n--~~~esir~~~~~la~~~~~~Gd~~~A~~~~~~~-r~~~~~~~~~~~~~l~ 181 (441)
+..+.+.++.+...+++|...|.++..+ -+..-++..+..+..-+...+|.++...-|..- +..-.-.+.+++.-+
T Consensus 53 qglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi- 131 (491)
T 1m1j_A 53 QGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV- 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5678888999999999999999887432 344455566667777788888888887777753 333333345555554
Q ss_pred HHHHHHHhcCHHHHHhHHHHHhcccc
Q 013559 182 AILVSIEMGQFTHVTSYVSKAEQTPE 207 (441)
Q Consensus 182 ~i~~~i~~~~~~~~~~~~~ka~~~~~ 207 (441)
-++.++.++.......+.|++..++
T Consensus 132 -~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 132 -NRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777888776543
No 434
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=26.86 E-value=16 Score=33.62 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 331 VETLYDQIRNKALIQYTHPFVSV-DLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 331 ~~~l~~~iR~~~i~qy~~pYs~I-~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
...+++.|+.++...-+.|-..+ +...||+.||+|...+-+-|..|..+|-|..+ +..|+.+..
T Consensus 18 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 82 (247)
T 2ra5_A 18 YFQLSQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR--RGVGTQVVH 82 (247)
T ss_dssp --------------------------------------------------CEEEEE--C--------
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--cCceeEEec
Confidence 44677777777777777888999 99999999999999999999999999988543 344665543
No 435
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=26.09 E-value=1.1e+02 Score=21.70 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=23.9
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHH
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALIT 378 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~ 378 (441)
.-.+...+|+.+|+|+..+...+.+.+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999988776553
No 436
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=26.05 E-value=85 Score=23.82 Aligned_cols=33 Identities=6% Similarity=0.058 Sum_probs=27.5
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCcc
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L 382 (441)
+.-.+...+|+.+|+|+..+...+.+....=+.
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 677899999999999999999998887654443
No 437
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=26.04 E-value=1e+02 Score=22.68 Aligned_cols=30 Identities=7% Similarity=0.192 Sum_probs=25.8
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHc
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITD 379 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~ 379 (441)
+.-.+...+|+.+|+|...+...+.+....
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 577899999999999999999988876543
No 438
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=25.83 E-value=5.1e+02 Score=26.65 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=52.0
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcccccCChhhhhhHHHHHH
Q 013559 143 NDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQTPEALEPVTIAKLRCAAG 222 (441)
Q Consensus 143 ~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~~~~~d~~~~~~l~~~~g 222 (441)
...+.++.+.|.++.|.+... ++.+.+ .+++..|+|+.|.+... .+-+...| ..-|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~-------~~~~~f-------~~~l~~~~~~~A~~~~~---~~~~~~~W-------~~la 688 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP-------DQDQKF-------ELALKVGQLTLARDLLT---DESAEMKW-------RALG 688 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-------CHHHHH-------HHHHHHTCHHHHHHHHT---TCCCHHHH-------HHHH
T ss_pred HHHHHHHHhCCChHHheecCC-------Ccchhe-------ehhhhcCCHHHHHHHHH---hhCcHhHH-------HHHH
Confidence 567788899999999886552 334433 45688899999876532 22222233 2345
Q ss_pred HHhcccccHHHHHHHHHhcC
Q 013559 223 LAHLEARKYKLAARKFLEVG 242 (441)
Q Consensus 223 l~~l~~r~y~~Aa~~Fl~~~ 242 (441)
-+.+..++|..|.+.|..+-
T Consensus 689 ~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 689 DASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHcc
Confidence 67788999999999998873
No 439
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=25.81 E-value=1.1e+02 Score=21.82 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=25.9
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHc
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITD 379 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~ 379 (441)
+.-.+...+|+.+|+|+..+...+.+....
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 677899999999999999999888876654
No 440
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=25.31 E-value=1.2e+02 Score=25.44 Aligned_cols=51 Identities=6% Similarity=0.108 Sum_probs=44.9
Q ss_pred ccc-ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecC
Q 013559 348 HPF-VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHA 398 (441)
Q Consensus 348 ~pY-s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~ 398 (441)
-.| +-||-..+++.|+++..-.-+-|..|-..|.|.--.-.....|++..+
T Consensus 58 pk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTra~ 109 (143)
T 2xzm_8 58 SKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSVIG 109 (143)
T ss_dssp TTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEETT
T ss_pred cccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEecCC
Confidence 568 999999999999999999999999999999998877777777777644
No 441
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=25.21 E-value=84 Score=21.44 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.1
Q ss_pred HHhHHHHcCCChHHHHHHHHH
Q 013559 355 LHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 355 L~~mA~~fg~s~~~~E~~L~~ 375 (441)
+..+|..||++...+-+|+..
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 899999999999999999754
No 442
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.17 E-value=1.2e+02 Score=20.93 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=23.5
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALI 377 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI 377 (441)
+.-.+...+|+.+|+|+..+...+.+..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567999999999999999888776654
No 443
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.13 E-value=98 Score=25.26 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=33.7
Q ss_pred HHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCcc
Q 013559 337 QIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQI 382 (441)
Q Consensus 337 ~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L 382 (441)
+.|.+++..+. .-.+...+|..||++...+-+|+.++-..|.+
T Consensus 36 e~r~~iv~~~~---~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~ 78 (149)
T 1k78_A 36 VVRQRIVELAH---QGVRPCDISRQLRVSHGCVSKILGRYYETGSI 78 (149)
T ss_dssp HHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 34555555552 45788999999999999999999999888764
No 444
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=25.03 E-value=29 Score=26.81 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhh
Q 013559 71 RMAYDEIKKGENTQLFREVVKKID 94 (441)
Q Consensus 71 ~~~~~~lk~t~~~~~Y~~~~~~l~ 94 (441)
+.++++++++ |.+.|..+++.|+
T Consensus 63 rkLL~YL~~~-d~~rY~~li~~Lg 85 (88)
T 1a32_A 63 RRLLAYLRNK-DVARYREIVEKLG 85 (88)
T ss_dssp HHHHHHHHHH-CHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CHHHHHHHHHHhC
Confidence 4678888877 6799999999876
No 445
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=24.74 E-value=79 Score=24.39 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=31.4
Q ss_pred HHHHHHHhccc---cc--cccHHhHHHHcCCChHHHHHHHHHHHHcCc
Q 013559 339 RNKALIQYTHP---FV--SVDLHMMANAFKTSVAGIEKELEALITDNQ 381 (441)
Q Consensus 339 R~~~i~qy~~p---Ys--~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~ 381 (441)
+..++..++.. |. -.++..+|..||+++..+-+|+...-.+|.
T Consensus 12 K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 12 RQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 44555555432 11 168899999999999999999998766553
No 446
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=24.71 E-value=69 Score=24.92 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=21.9
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~ 375 (441)
...++++.||+.+|+|+..+.+.+.+
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35699999999999999988777655
No 447
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=24.55 E-value=1.2e+02 Score=25.76 Aligned_cols=43 Identities=7% Similarity=-0.159 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhccccc--cccHHhHHHHcCCChHHHHHHHH
Q 013559 332 ETLYDQIRNKALIQYTHPFV--SVDLHMMANAFKTSVAGIEKELE 374 (441)
Q Consensus 332 ~~l~~~iR~~~i~qy~~pYs--~I~L~~mA~~fg~s~~~~E~~L~ 374 (441)
..+-..++.++..+++-|+. .+++..+|+.+|+|...+-+|..
T Consensus 26 ~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 26 AKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp HHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 34555565566667876666 59999999999999999999887
No 448
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=24.50 E-value=1.3e+02 Score=27.42 Aligned_cols=45 Identities=7% Similarity=0.091 Sum_probs=37.7
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
...+++..||+.+|++...+-+.|..|...|-+.-. ...+.+..+
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEEC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEEC
Confidence 467999999999999999999999999999999764 445555554
No 449
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.48 E-value=57 Score=24.04 Aligned_cols=31 Identities=16% Similarity=-0.050 Sum_probs=25.6
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCcc
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQI 382 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L 382 (441)
+.-.|..||..+|++.+.|..|..+.= .|++
T Consensus 31 s~eei~~LA~~lgL~~~VVrVWFqNrR-a~~~ 61 (71)
T 2da7_A 31 NSDELLKISIAVGLPQEFVKEWFEQRK-VYQY 61 (71)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHhhcc-cccc
Confidence 566799999999999999999999853 3443
No 450
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=24.03 E-value=97 Score=22.97 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=24.4
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHH
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALIT 378 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~ 378 (441)
.-.+...+|+.+|+|+..+...+.+.+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999988877654
No 451
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=23.82 E-value=1.8e+02 Score=23.28 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=31.9
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
..++...||+.+|++...+-+.|.+|...|-|.-+-|..++
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 35899999999999999999999999999999776666555
No 452
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=23.78 E-value=68 Score=25.97 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=27.3
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCe
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKI 392 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gv 392 (441)
..++...+|+.+|++...+-+.|.+|...|-|.-.-|..++-
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR 97 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNAR 97 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCch
Confidence 679999999999999999999999999999998777666553
No 453
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=23.76 E-value=1.2e+02 Score=24.02 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=52.2
Q ss_pred HHhhhhchhHH---HHHHHHHHHHHHHHHHHhc-cccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecC
Q 013559 318 KANLLLDIHLH---DHVETLYDQIRNKALIQYT-HPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDS 388 (441)
Q Consensus 318 ~~~l~~D~~L~---~h~~~l~~~iR~~~i~qy~-~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~ 388 (441)
+.....++|-. .+....|-.+|..++..|- .|..-+|.......+.-++..+-+-..=|=.=|-||--+|+
T Consensus 29 Ek~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN~~v~~ 103 (104)
T 2fq3_A 29 EVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLINYQVDS 103 (104)
T ss_dssp HHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSSSCC--
T ss_pred HHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHHHHHcCeeccCCCC
Confidence 33444555543 3567899999999999994 79999999999999977887777766666666777766664
No 454
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=23.63 E-value=3e+02 Score=22.40 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=44.3
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC---eEEEecCCchhHHHHHHHHH
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK---ILYARHADQRNATFQRVLQT 411 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g---vv~~~~~d~r~~~~~~~i~~ 411 (441)
..++.+.+|+.+|++...+-+.|.+|...|-|.-.-|..++ .|..++. -...++++...
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~--G~~~~~~~~~~ 106 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQ--SSPIIEQVDGV 106 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGG--GHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHH--HHHHHHHHHHH
Confidence 45677899999999999999999999999999888888777 3444422 33444444443
No 455
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=23.57 E-value=90 Score=24.96 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=21.6
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~ 375 (441)
...++++.||+.+|+|+..+.+.+.+
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34599999999999999988776655
No 456
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=23.55 E-value=1e+02 Score=20.77 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=24.5
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALIT 378 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~ 378 (441)
+.-.+...+|+.+|+|+..+...+.+...
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45668899999999999999988887654
No 457
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=23.52 E-value=97 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.0
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHH
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~ 375 (441)
...++++.||+.+|+|+..+.+.+.+
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45799999999999999988777654
No 458
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=23.36 E-value=1.3e+02 Score=26.33 Aligned_cols=42 Identities=10% Similarity=-0.038 Sum_probs=35.2
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCC
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNK 391 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~g 391 (441)
...++...||+.+|++...+-+.|.+|...|-|.-+-|..++
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~Dr 101 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDK 101 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC----
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 357999999999999999999999999999999887776655
No 459
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=23.23 E-value=85 Score=23.51 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=30.0
Q ss_pred ccccHHhHHHHc-CCChHHHHHHHHHHHHcCccc
Q 013559 351 VSVDLHMMANAF-KTSVAGIEKELEALITDNQIQ 383 (441)
Q Consensus 351 s~I~L~~mA~~f-g~s~~~~E~~L~~LI~~g~L~ 383 (441)
+..-++.+++.| ++.+-++.+-+..||.+|+|.
T Consensus 20 skfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 20 SKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp SCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 466788999999 999999999999999999984
No 460
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=22.72 E-value=35 Score=29.71 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=0.0
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEec
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARH 397 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~ 397 (441)
-.++.+.||..+|++.+.+-+.+.+|..+|-|. ...|.|...+
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~----~~~~~i~I~d 205 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVFQELEREGYIE----KHGRRIKVLK 205 (213)
T ss_dssp -----------------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEE----EcCCEEEEec
Confidence 468899999999999999999999999988763 2334455443
No 461
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=22.68 E-value=2.9e+02 Score=24.18 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=41.6
Q ss_pred HHHHHhccccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEe
Q 013559 341 KALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYAR 396 (441)
Q Consensus 341 ~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~ 396 (441)
+++-...+....++...+|+.+|++...+-+.|.+|...|-+.-.=| +.|..+
T Consensus 9 ~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~i~LT 61 (214)
T 3hrs_A 9 KCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK---AGYLLT 61 (214)
T ss_dssp HHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---TEEEEC
T ss_pred HHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC---CCeEEC
Confidence 33444455667899999999999999999999999999998865433 555555
No 462
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=22.65 E-value=1.1e+02 Score=24.44 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=42.4
Q ss_pred cccccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEec
Q 013559 348 HPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARH 397 (441)
Q Consensus 348 ~pYs~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~ 397 (441)
-.|+-||-..+++.|+++..-+-.-|..|-..|-|.--.-.....|++..
T Consensus 55 pk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr~ 104 (108)
T 3u5c_Z 55 PTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRA 104 (108)
T ss_dssp SSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEECC
T ss_pred cCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEecC
Confidence 45899999999999999999999999999999999776655555676654
No 463
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=22.54 E-value=18 Score=33.82 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=0.0
Q ss_pred ccccHHhHHHHc-CCChHHHHHHHHHHHHcCccceEecC
Q 013559 351 VSVDLHMMANAF-KTSVAGIEKELEALITDNQIQARIDS 388 (441)
Q Consensus 351 s~I~L~~mA~~f-g~s~~~~E~~L~~LI~~g~L~akID~ 388 (441)
.=|+++.+++.| +++++++.+.|-.|+.+|.|...||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 568888999999 79999999999999999999998884
No 464
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=22.46 E-value=56 Score=20.99 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=14.9
Q ss_pred cHHhHHHHcCCChHHHHH
Q 013559 354 DLHMMANAFKTSVAGIEK 371 (441)
Q Consensus 354 ~L~~mA~~fg~s~~~~E~ 371 (441)
+|..+|+.||++.+.+.+
T Consensus 12 tl~~Ia~~~~~~~~~l~~ 29 (48)
T 1e0g_A 12 SLSSIAKRHGVNIKDVMR 29 (48)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHH
Confidence 688999999999877644
No 465
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.44 E-value=94 Score=23.21 Aligned_cols=30 Identities=7% Similarity=0.164 Sum_probs=25.8
Q ss_pred cccccHHhHHHHcCCChHHHHHHHHHHHHc
Q 013559 350 FVSVDLHMMANAFKTSVAGIEKELEALITD 379 (441)
Q Consensus 350 Ys~I~L~~mA~~fg~s~~~~E~~L~~LI~~ 379 (441)
+.-.+...+|+.+|+|+..+...+.+....
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567889999999999999999998886653
No 466
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=20.95 E-value=3.9e+02 Score=23.84 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=49.5
Q ss_pred HHHhccccc-cccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCeEEEecCCchhHHHHHHHHHHhhHHHHHHH
Q 013559 343 LIQYTHPFV-SVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRA 421 (441)
Q Consensus 343 i~qy~~pYs-~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gvv~~~~~d~r~~~~~~~i~~~~~~~~~~~~ 421 (441)
+..++.... .+++..||+.+|++...+-+.|..|...|-+.-. .+|..... ++.-..-........+...++.
T Consensus 13 iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~---~~~~Y~lg---~~~~~l~~~~~~~~~l~~~a~p 86 (249)
T 1mkm_A 13 ILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK---KDKRYVPG---YKLIEYGSFVLRRFNIRDIAHD 86 (249)
T ss_dssp HHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC---TTSCEEEC---THHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC---CCCcEEEC---HHHHHHHHHHHhcCCHHHHHHH
Confidence 334444343 6999999999999999999999999999998653 34433332 2222222222333445555555
Q ss_pred HHHHHH
Q 013559 422 MLLRAN 427 (441)
Q Consensus 422 l~lR~~ 427 (441)
.+-++.
T Consensus 87 ~l~~L~ 92 (249)
T 1mkm_A 87 HLVDIM 92 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 467
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=20.47 E-value=1e+02 Score=27.67 Aligned_cols=41 Identities=17% Similarity=-0.003 Sum_probs=34.6
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCccceEecCCCCe
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKI 392 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~L~akID~~~gv 392 (441)
..||...+|..||+++.-+...|-.++.+|-+-- =|+..|.
T Consensus 167 g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~-D~~~eg~ 207 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCR-DDSVEGL 207 (218)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-EESSSCE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEE-ECCCCce
Confidence 5799999999999999999999999999998732 2466673
No 468
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.45 E-value=66 Score=20.93 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=19.6
Q ss_pred cccHHhHHHHcCCChHHHHHHHHH
Q 013559 352 SVDLHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 352 ~I~L~~mA~~fg~s~~~~E~~L~~ 375 (441)
.+++..+|+.+|+++..+-..+.+
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~ 25 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFAD 25 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHH
Confidence 367889999999999987666654
No 469
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=20.39 E-value=33 Score=28.08 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhccccccccHHhHHHHcCCChHHHHHHHHH
Q 013559 333 TLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEA 375 (441)
Q Consensus 333 ~l~~~iR~~~i~qy~~pYs~I~L~~mA~~fg~s~~~~E~~L~~ 375 (441)
..++.|..|++..| ++..=-+--+|++||+|.+++++-+++
T Consensus 5 e~~~~MK~ril~S~--~w~edviiPlSk~lgis~ee~~~I~~~ 45 (126)
T 1nxh_A 5 ELMRLMKRRILESY--RWQEDVVKPLSRELEIDVEEFQDILMD 45 (126)
T ss_dssp HHHHHHHHHHHTSH--HHHHHTTTTTTTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--hHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 56778888888876 333333445788999999999887765
No 470
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=20.32 E-value=61 Score=25.17 Aligned_cols=31 Identities=6% Similarity=-0.043 Sum_probs=26.9
Q ss_pred ccccHHhHHHHcCCChHHHHHHHHHHHHcCc
Q 013559 351 VSVDLHMMANAFKTSVAGIEKELEALITDNQ 381 (441)
Q Consensus 351 s~I~L~~mA~~fg~s~~~~E~~L~~LI~~g~ 381 (441)
-.+++...|..||++.+.+..|...+-..|.
T Consensus 48 g~~s~~e~arry~Is~s~i~~W~r~~~~~G~ 78 (95)
T 2jrt_A 48 GLITEREALDRYSLSEEEFALWRSAVAAHGE 78 (95)
T ss_dssp TSSCHHHHHHHTTCCHHHHHHHHHHTTTCCT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhH
Confidence 5678999999999999999999998766654
No 471
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.25 E-value=1.4e+02 Score=30.04 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=42.9
Q ss_pred HHHhHHhHHHHHHHHcCCHHHHHHHHHHHHhh-hcC-------chhHHHHHHHHHHHHHHhcCHH
Q 013559 137 SIRMGYNDFGDFYYAHGALGDAFKSYVRTRDY-CTT-------SKHIIHMCMSAILVSIEMGQFT 193 (441)
Q Consensus 137 sir~~~~~la~~~~~~Gd~~~A~~~~~~~r~~-~~~-------~~~~~~~~l~~i~~~i~~~~~~ 193 (441)
+...=+|-+|+++.-.++|.+|.+.+...... |.. .+++.-+..-+|=+.+..|...
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P 282 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMV 282 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 44456788999999999999999999999777 753 3455555555666777777543
No 472
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=20.20 E-value=37 Score=26.16 Aligned_cols=23 Identities=13% Similarity=0.433 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhh
Q 013559 71 RMAYDEIKKGENTQLFREVVKKID 94 (441)
Q Consensus 71 ~~~~~~lk~t~~~~~Y~~~~~~l~ 94 (441)
+.++++++++ |.+.|..+++.|+
T Consensus 63 rkLL~YL~~~-d~~rY~~li~~Lg 85 (88)
T 3r8n_O 63 RKLLDYLKRK-DVARYTQLIERLG 85 (88)
T ss_dssp HHHHHHHHHS-CHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CHHHHHHHHHHhC
Confidence 3577777776 6799999999876
No 473
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=20.19 E-value=2.5e+02 Score=24.01 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=43.6
Q ss_pred HHhHHHHHHHHcCCHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhcCHHHHHhHHHHHhcc
Q 013559 141 GYNDFGDFYYAHGALGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFTHVTSYVSKAEQT 205 (441)
Q Consensus 141 ~~~~la~~~~~~Gd~~~A~~~~~~~r~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~ka~~~ 205 (441)
.+..+|.+ .+++|.+.|.+.|..++..|..= .-+.+...+-.|-.||...+.+-+.++-..
T Consensus 63 LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 63 IQVRFAEL-KAIQEPDDARDYFQMARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 55677766 78899999999999987764322 223334444566788888888888887764
Done!