BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013560
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SPS|A Chain A, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|B Chain B, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|C Chain C, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|D Chain D, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|E Chain E, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|F Chain F, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
Length = 169
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 114 GKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWV 173
GK+L +D +A ++KH + +VTAS+D + K S +V L++ G V
Sbjct: 44 GKVLAYIDEIAALTAMKHANS--------AVVTASIDSVDFKSSATVGDALELEGFVTHT 95
Query: 174 GRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRLSPQTEREKSLF 233
GR+S+E+ + V + T + + T +F+ + ++GK PV ++ PQTE EK L+
Sbjct: 96 GRTSMEVYVRVHSNNLL---TGERTLTTESFLTMVAVDESGKPKPVPQVEPQTEEEKRLY 152
Query: 234 EEAEARSKLRKRK 246
E A AR + RK++
Sbjct: 153 ETAPARKENRKKR 165
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 287 RDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRP 346
R ++ L+ P ++ G IFGG ++ E+A TA A +D VDF
Sbjct: 21 RSRTIQTRLVLPPDTNHL-GTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDSVDFKSS 79
Query: 347 VDVGDFLRFKSCVLYT 362
VGD L + V +T
Sbjct: 80 ATVGDALELEGFVTHT 95
>pdb|1VPM|A Chain A, Crystal Structure Of Acyl-Coa Hydrolase (Np_241664.1) From
Bacillus Halodurans At 1.66 A Resolution
pdb|1VPM|B Chain B, Crystal Structure Of Acyl-Coa Hydrolase (Np_241664.1) From
Bacillus Halodurans At 1.66 A Resolution
pdb|1VPM|C Chain C, Crystal Structure Of Acyl-Coa Hydrolase (Np_241664.1) From
Bacillus Halodurans At 1.66 A Resolution
Length = 169
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 11/133 (8%)
Query: 114 GKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWV 173
GK+L +D +A + KH + +VTAS+D + K S +V L++ G V
Sbjct: 44 GKVLAYIDEIAALTAXKHANS--------AVVTASIDSVDFKSSATVGDALELEGFVTHT 95
Query: 174 GRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRLSPQTEREKSLF 233
GR+S E+ + V + T + + T +F+ ++GK PV ++ PQTE EK L+
Sbjct: 96 GRTSXEVYVRVHSNNLL---TGERTLTTESFLTXVAVDESGKPKPVPQVEPQTEEEKRLY 152
Query: 234 EEAEARSKLRKRK 246
E A AR + RK++
Sbjct: 153 ETAPARKENRKKR 165
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 287 RDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRP 346
R ++ L+ P ++ G IFGG ++ E+A TA A +D VDF
Sbjct: 21 RSRTIQTRLVLPPDTNHL-GTIFGGKVLAYIDEIAALTAXKHANSAVVTASIDSVDFKSS 79
Query: 347 VDVGDFLRFKSCVLYT 362
VGD L + V +T
Sbjct: 80 ATVGDALELEGFVTHT 95
>pdb|2QQ2|A Chain A, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|B Chain B, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|C Chain C, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|D Chain D, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|E Chain E, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|F Chain F, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|G Chain G, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|H Chain H, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|I Chain I, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|J Chain J, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|K Chain K, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|L Chain L, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
Length = 193
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 52 NALWEARSKIFERLLDPPKDAPPQSELLTKTSSQSRTSILYNFSTDDILREQYRDPWNEV 111
N +++ I + +L+P + T S S++S+++ D + V
Sbjct: 17 NLYFQSMGDIVQPVLNPEPN----------TVSYSQSSLIHLVGPSDCTLHGF------V 60
Query: 112 RIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVI 171
G ++ +D +AG ++ +HC + +VTASVD I I + I G +
Sbjct: 61 HGGVTMKLMDEVAGIVAARHCKTN--------IVTASVDAINFHDKIRKGCVITISGRMT 112
Query: 172 WVGRSSIEIQLEVIQSTKEVSDTSDSVVLTAN--FIFVARDSKTGKAAPVNRLSPQTERE 229
+ S+EI EV+ V D+S A+ F +V+ S+ G++ PV +L P+TE E
Sbjct: 113 FTSNKSMEI--EVLVDADPVVDSSQKRYRAASAFFTYVSL-SQEGRSLPVPQLVPETEDE 169
Query: 230 KSLFEEAEARSKLRKRKTGG 249
K FEE + R K K G
Sbjct: 170 KKRFEEGKGRYLQMKAKRQG 189
>pdb|2Q2B|A Chain A, Crystal Structure Of The C-Terminal Domain Of Mouse
Acyl-Coa Thioesterase 7
pdb|2Q2B|B Chain B, Crystal Structure Of The C-Terminal Domain Of Mouse
Acyl-Coa Thioesterase 7
Length = 179
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 19/170 (11%)
Query: 82 TSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRP 141
T S S++S+++ D + V G ++ +D +AG ++ +HC +
Sbjct: 21 TVSYSQSSLIHLVGPSDCTLHGF------VHGGVTMKLMDEVAGIVAARHCKTN------ 68
Query: 142 LLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLT 201
+VTASVD I I + I G + + S+EI EV+ V D S
Sbjct: 69 --IVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEI--EVLVDADPVVDNSQKRYRA 124
Query: 202 AN--FIFVARDSKTGKAAPVNRLSPQTEREKSLFEEAEARSKLRKRKTGG 249
A+ F +V+ + + GK PV +L P+TE EK FEE + R K K G
Sbjct: 125 ASAFFTYVSLNQE-GKPMPVPQLVPETEDEKKRFEEGKGRYLQMKAKRQG 173
>pdb|3B7K|A Chain A, Human Acyl-Coenzyme A Thioesterase 12
pdb|3B7K|B Chain B, Human Acyl-Coenzyme A Thioesterase 12
pdb|3B7K|C Chain C, Human Acyl-Coenzyme A Thioesterase 12
Length = 333
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 112/279 (40%), Gaps = 32/279 (11%)
Query: 88 TSILYNFSTDDILREQYRDPWN-----EVRIGKLLEDLDALAGTISVKHCSDDDSMTRPL 142
T LY S +++ Q P + E+ G+LL+ +D A + KH +
Sbjct: 15 TENLYFQSMGEVVMSQAIQPAHATARGELSAGQLLKWIDTTACLAAEKHAG--------V 66
Query: 143 LLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTA 202
VTASVD I +++ V + I V +S+EI ++V+ +++ + +V A
Sbjct: 67 SCVTASVDDIQFEETARVGQVITIKAKVTRAFSTSMEISIKVM--VQDMLTGIEKLVSVA 124
Query: 203 NFIFVARDSKTGKA--APVNRLSPQTEREKSLFEEAEARSKLRKRKTGGDRRELDNGEVN 260
FVA+ K PV L+ Q E +L +RR++ +
Sbjct: 125 FSTFVAKPVGKEKIHLKPVTLLTEQDHVEHNL---------------AAERRKVRLQHED 169
Query: 261 RLEALLAEGRVICDMPALADRNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFEL 320
L+ E D+ + ++ R T +++ + P N HG FGG +M +
Sbjct: 170 TFNNLMKESSKFDDLIFDEEEGAVSTRGTSVQSIELVLPPHANHHGNTFGGQIMAWMETV 229
Query: 321 AFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCV 359
A +A P VD F P VGD L F + V
Sbjct: 230 ATISASRLCWAHPFLKSVDMFKFRGPSTVGDRLVFTAIV 268
>pdb|4IEN|A Chain A, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
pdb|4IEN|B Chain B, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
pdb|4IEN|C Chain C, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
pdb|4IEN|D Chain D, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
Length = 163
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 299 PQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSC 358
P N G + GG L+L ++A+S A ++G L VD V F P+ +GD + F +
Sbjct: 23 PDTANFSGNVHGGELLLLLDQVAYSCASRYSGNYCVTLSVDKVLFKEPIHIGDLVTFYAA 82
Query: 359 VLYTELENPDQPLINIEVVAHVTRPEFRSSEV--SNTFYFTFTVSK 402
V YT ++E+ V R+ E+ +N+ YFT K
Sbjct: 83 VNYT-------GRTSMEIGIRVEAQNIRTGEIRHTNSCYFTMVAVK 121
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 111 VRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAV 170
V G+LL LD +A + + ++ + VT SVDK+ K+ I + + AV
Sbjct: 32 VHGGELLLLLDQVAYSCASRYSGN--------YCVTLSVDKVLFKEPIHIGDLVTFYAAV 83
Query: 171 IWVGRSSIEIQLEVIQS---TKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRLSPQTE 227
+ GR+S+EI + V T E+ T+ + F VA K GK PV L T+
Sbjct: 84 NYTGRTSMEIGIRVEAQNIRTGEIRHTN-----SCYFTMVA--VKDGKPVPVPPLEILTD 136
Query: 228 REKSLFEEAEAR 239
R++ +E+A+ R
Sbjct: 137 RQRCRYEKAKKR 148
>pdb|1Y7U|A Chain A, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus
Cereus
pdb|1Y7U|B Chain B, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus
Cereus
pdb|1Y7U|C Chain C, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus
Cereus
Length = 174
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 26/191 (13%)
Query: 76 SELLTKTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDD 135
+E+ KT+++SR F T + D N + GK+L + D +A + +H +
Sbjct: 8 TEVKGKTANESRV-----FKTSRVFPTDLNDH-NTLFGGKILSEXDXVASISASRHSRKE 61
Query: 136 DSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTS 195
VTAS D + + + VIW GR+S E+ ++V+ E +
Sbjct: 62 --------CVTASXDWVDFLHPVRSSDCVSYESFVIWTGRTSXEVFVKVVS---EYLISG 110
Query: 196 DSVVLTANFIFVARDSKTGKAAPVNRLSPQTEREKSLFEEAEARSKLRKRKTGGDRRELD 255
+ + +F+ SK PV R+ P TE EK E+ + LR ++R +
Sbjct: 111 EKRIAATSFVTFVALSKENNPVPVPRVIPDTEEEK----ESHRIAVLR-----AEQRHIR 161
Query: 256 NGEVNRLEALL 266
E ++ LL
Sbjct: 162 KAESKKVATLL 172
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 10/146 (6%)
Query: 299 PQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSC 358
P N H +FGG ++ +A +A + D VDFL PV D + ++S
Sbjct: 28 PTDLNDHNTLFGGKILSEXDXVASISASRHSRKECVTASXDWVDFLHPVRSSDCVSYESF 87
Query: 359 VLYTELENPDQPLINIEVVAHVTRPEFRSSE--VSNTFYFTFTVSKAVTNGFRIRNVVPG 416
V++T + EV V S E ++ T + TF N + V+P
Sbjct: 88 VIWT-------GRTSXEVFVKVVSEYLISGEKRIAATSFVTFVALSKENNPVPVPRVIPD 140
Query: 417 TQEEAR-HILERMDAKALQLSKGVSK 441
T+EE H + + A+ + K SK
Sbjct: 141 TEEEKESHRIAVLRAEQRHIRKAESK 166
>pdb|2GVH|A Chain A, Crystal Structure Of Acyl-Coa Hydrolase (15159470) From
Agrobacterium Tumefaciens At 2.65 A Resolution
pdb|2GVH|B Chain B, Crystal Structure Of Acyl-Coa Hydrolase (15159470) From
Agrobacterium Tumefaciens At 2.65 A Resolution
pdb|2GVH|C Chain C, Crystal Structure Of Acyl-Coa Hydrolase (15159470) From
Agrobacterium Tumefaciens At 2.65 A Resolution
Length = 288
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 296 ICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRF 355
I P Q N GR FGG + + AF A + G + + +DF R +++G+ +
Sbjct: 165 IVFPDQANSAGRXFGGEAIAYXTKAAFVAASRYCGKLVVLASSERIDFARAIEIGEIVEA 224
Query: 356 KSCV 359
++ V
Sbjct: 225 QAHV 228
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 296 ICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRF 355
I P N HG +FGG + +AF A F + +DF +P +G + F
Sbjct: 34 IVFPGDTNHHGTLFGGTGLALXDRVAFIAATRFGRTPFVTASCERIDFRQPARIGHIVEF 93
Query: 356 KS 357
+
Sbjct: 94 TA 95
>pdb|3BJK|A Chain A, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
pdb|3BJK|B Chain B, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
pdb|3BJK|C Chain C, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
pdb|3BJK|D Chain D, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
pdb|3BJK|E Chain E, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
pdb|3BJK|F Chain F, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
Length = 153
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 144 LVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEV-IQSTKEVSDTSDSVVLTA 202
+VT +V+ + K ISV + G + VGRSSI+I++EV ++ V A
Sbjct: 58 VVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKVASEPIGERYCVTDA 117
Query: 203 NFIFVARDSKTGKAAPVNRLSPQTEREKSL 232
F FVA D+ G++ + R + Q E EK+L
Sbjct: 118 VFTFVAVDN-NGRSRTIPRENNQ-ELEKAL 145
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 296 ICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFL 353
+ P N +G IFGG++M + A A + V+ ++F++P+ VGD +
Sbjct: 21 LAMPSDTNANGDIFGGWIMSQMAMGGAILAKEIAHGRVVTVAVESMNFIKPISVGDVV 78
>pdb|1YLI|A Chain A, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase
pdb|1YLI|B Chain B, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase
Length = 153
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 144 LVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEV-IQSTKEVSDTSDSVVLTA 202
+VT +V+ + K ISV + G + VGRSSI+I++EV ++ V A
Sbjct: 58 VVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKVASEPIGERYCVTDA 117
Query: 203 NFIFVARDSKTGKAAPVNRLSPQTEREKSL 232
F FVA D+ G++ + R + Q E EK+L
Sbjct: 118 VFTFVAVDN-NGRSRTIPRENNQ-ELEKAL 145
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 296 ICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFL 353
+ P N +G IFGG++M + A A + V+ ++F++P+ VGD +
Sbjct: 21 LAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIAHGRVVTVAVESMNFIKPISVGDVV 78
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 332 MPCF-LEVDHVDFLRPVDVGDFLRFKSCVLYTEL-ENPDQPLINIEVVAHVTRPEFRSSE 389
MP F + V VD +P ++ +R ++ V+Y E NP L++IE VA + +
Sbjct: 124 MPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLV 183
Query: 390 VSNTF 394
V NTF
Sbjct: 184 VDNTF 188
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 322 FSTAYAF-AGLMPCF-LEVDHVDFLRPVDVGDFLRFKSCVLYTEL-ENPDQPLINIEVVA 378
+ +AF + MP F + V VD +P ++ +R ++ V+Y E NP L++IE VA
Sbjct: 113 YGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVA 172
Query: 379 HVTRPEFRSSEVSNTF 394
+ + V NTF
Sbjct: 173 GIAHQQGALLVVDNTF 188
>pdb|2EIS|A Chain A, X-Ray Structure Of Acyl-Coa Hydrolase-Like Protein,
Tt1379, From Thermus Thermophilus Hb8
pdb|2EIS|B Chain B, X-Ray Structure Of Acyl-Coa Hydrolase-Like Protein,
Tt1379, From Thermus Thermophilus Hb8
Length = 133
Score = 31.6 bits (70), Expect = 0.83, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 299 PQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVG 350
P + N +G +FGG ++ + AF A A + D VDF RPV +G
Sbjct: 12 PGETNHYGTLFGGTVLAWXDQAAFVAATRHARKKVVTVHADAVDFKRPVPLG 63
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 322 FSTAYAF-AGLMPCF-LEVDHVDFLRPVDVGDFLRFKSCVLYTEL-ENPDQPLINIEVVA 378
+ +AF + MP F + V VD +P ++ +R ++ V+Y E NP L++IE VA
Sbjct: 113 YGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVA 172
Query: 379 HVTRPEFRSSEVSNTF 394
+ + V NTF
Sbjct: 173 GIAHQQGALLVVDNTF 188
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 322 FSTAYAF-AGLMPCF-LEVDHVDFLRPVDVGDFLRFKSCVLYTEL-ENPDQPLINIEVVA 378
+ +AF + MP F + V VD +P ++ +R ++ V+Y E NP L++IE VA
Sbjct: 113 YGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVA 172
Query: 379 HVTRPEFRSSEVSNTF 394
+ + V NTF
Sbjct: 173 GIAHQQGALLVVDNTF 188
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 322 FSTAYAF-AGLMPCF-LEVDHVDFLRPVDVGDFLRFKSCVLYTEL-ENPDQPLINIEVVA 378
+ +AF + MP F + V VD +P ++ +R ++ V+Y E NP L++IE VA
Sbjct: 113 YGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVA 172
Query: 379 HVTRPEFRSSEVSNTF 394
+ + V NTF
Sbjct: 173 GIAHQQGALLVVDNTF 188
>pdb|2V1O|A Chain A, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|B Chain B, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|C Chain C, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|D Chain D, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|E Chain E, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|F Chain F, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
Length = 151
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 296 ICQPQQRNIHGRIFGGFL--MLRAFELAFSTAYAFAG----LMPCFLEVDHVDFLRPVDV 349
I +P N+ G + GG + M+ ST + + + V+ DFL P+ +
Sbjct: 5 IMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCI 64
Query: 350 GDFLRFKSCVLYT 362
G+ + + YT
Sbjct: 65 GEVAHVSAEITYT 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,929,687
Number of Sequences: 62578
Number of extensions: 473431
Number of successful extensions: 907
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 29
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)