Query 013560
Match_columns 441
No_of_seqs 349 out of 2597
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02647 acyl-CoA thioesterase 100.0 6E-106 1E-110 826.6 50.3 434 1-434 1-436 (437)
2 KOG2763 Acyl-CoA thioesterase 100.0 5.2E-57 1.1E-61 447.1 25.2 313 76-424 14-329 (357)
3 COG1607 Acyl-CoA hydrolase [Li 100.0 3E-35 6.5E-40 263.3 19.6 147 287-438 10-156 (157)
4 COG1607 Acyl-CoA hydrolase [Li 100.0 4.8E-33 1E-37 249.1 19.4 138 98-246 18-155 (157)
5 PLN02647 acyl-CoA thioesterase 100.0 7.1E-29 1.5E-33 256.1 22.4 150 284-438 81-247 (437)
6 PRK10694 acyl-CoA esterase; Pr 100.0 8.4E-28 1.8E-32 212.0 16.6 120 288-412 9-131 (133)
7 PRK10694 acyl-CoA esterase; Pr 99.9 2.6E-24 5.5E-29 189.9 16.5 115 98-221 16-131 (133)
8 cd03442 BFIT_BACH Brown fat-in 99.7 1.6E-16 3.6E-21 136.2 17.2 122 285-411 2-123 (123)
9 cd03442 BFIT_BACH Brown fat-in 99.7 3.3E-16 7.1E-21 134.3 16.8 121 83-220 3-123 (123)
10 KOG2763 Acyl-CoA thioesterase 99.7 3.3E-17 7.2E-22 163.5 11.0 144 290-438 8-162 (357)
11 PLN02322 acyl-CoA thioesterase 99.5 1.5E-12 3.3E-17 117.4 15.6 112 282-401 19-134 (154)
12 TIGR02286 PaaD phenylacetic ac 99.5 2E-12 4.4E-17 110.7 14.4 106 282-399 7-112 (114)
13 PRK10293 acyl-CoA esterase; Pr 99.4 4.2E-12 9E-17 112.6 14.7 109 280-400 25-135 (136)
14 PRK10254 thioesterase; Provisi 99.4 1.3E-11 2.8E-16 109.5 15.8 109 281-401 26-136 (137)
15 COG0824 FcbC Predicted thioest 99.4 4.7E-12 1E-16 112.4 12.5 119 94-222 6-126 (137)
16 TIGR02799 thio_ybgC tol-pal sy 99.4 1.1E-11 2.4E-16 107.1 13.9 116 97-222 4-122 (126)
17 PRK10800 acyl-CoA thioesterase 99.4 1.4E-11 3E-16 107.7 13.5 118 95-221 4-123 (130)
18 COG2050 PaaI HGG motif-contain 99.3 2E-11 4.4E-16 108.6 14.3 111 281-402 26-138 (141)
19 TIGR00369 unchar_dom_1 unchara 99.3 2.4E-11 5.1E-16 104.5 13.7 106 282-399 9-116 (117)
20 PRK11688 hypothetical protein; 99.3 5.9E-11 1.3E-15 107.3 15.4 108 281-400 29-153 (154)
21 PLN02322 acyl-CoA thioesterase 99.3 9.7E-11 2.1E-15 105.7 15.5 117 79-211 19-136 (154)
22 PRK10293 acyl-CoA esterase; Pr 99.3 1.5E-10 3.3E-15 102.6 15.3 109 79-208 27-135 (136)
23 PRK10254 thioesterase; Provisi 99.3 1.6E-10 3.5E-15 102.6 15.3 110 78-208 26-135 (137)
24 PF03061 4HBT: Thioesterase su 99.3 8E-11 1.7E-15 92.9 12.0 74 108-188 1-74 (79)
25 TIGR02286 PaaD phenylacetic ac 99.3 1.4E-10 3.1E-15 99.2 14.3 102 83-207 11-112 (114)
26 TIGR00051 acyl-CoA thioester h 99.2 1.4E-10 3E-15 98.5 13.3 114 98-220 2-117 (117)
27 TIGR00369 unchar_dom_1 unchara 99.2 2.6E-10 5.6E-15 98.0 14.6 103 83-206 13-115 (117)
28 PF13279 4HBT_2: Thioesterase- 99.2 6.5E-10 1.4E-14 95.4 14.7 114 100-221 1-115 (121)
29 COG2050 PaaI HGG motif-contain 99.2 6.9E-10 1.5E-14 98.8 14.4 113 79-211 27-139 (141)
30 cd03443 PaaI_thioesterase PaaI 99.1 1.9E-09 4.1E-14 90.9 14.2 105 283-399 6-112 (113)
31 PRK11688 hypothetical protein; 99.1 2.8E-09 6.1E-14 96.3 14.1 114 79-207 30-152 (154)
32 cd03443 PaaI_thioesterase PaaI 99.1 4.5E-09 9.7E-14 88.6 14.4 103 84-207 10-112 (113)
33 cd00586 4HBT 4-hydroxybenzoyl- 99.0 3.8E-09 8.3E-14 87.1 12.2 105 98-210 5-110 (110)
34 KOG3328 HGG motif-containing t 99.0 3.3E-09 7.2E-14 93.7 12.2 83 282-365 30-113 (148)
35 PF03061 4HBT: Thioesterase su 99.0 3.4E-09 7.5E-14 83.4 10.9 70 305-379 1-71 (79)
36 PRK04424 fatty acid biosynthes 98.9 3.5E-08 7.5E-13 92.1 15.1 104 282-400 76-181 (185)
37 PRK07531 bifunctional 3-hydrox 98.9 9.9E-09 2.2E-13 109.5 12.9 116 97-221 349-465 (495)
38 TIGR02447 yiiD_Cterm thioester 98.9 5E-08 1.1E-12 86.7 13.8 105 282-401 15-137 (138)
39 cd00586 4HBT 4-hydroxybenzoyl- 98.7 4.6E-07 1E-11 74.5 13.6 99 293-402 3-110 (110)
40 cd03440 hot_dog The hotdog fol 98.5 2.1E-06 4.6E-11 66.4 12.5 94 99-206 6-99 (100)
41 PLN02370 acyl-ACP thioesterase 98.5 8E-06 1.7E-10 84.9 19.8 219 94-359 140-365 (419)
42 TIGR02447 yiiD_Cterm thioester 98.5 1.7E-06 3.7E-11 76.9 12.7 108 81-209 17-137 (138)
43 KOG3328 HGG motif-containing t 98.5 6.5E-07 1.4E-11 79.2 9.8 114 77-210 28-141 (148)
44 PRK04424 fatty acid biosynthes 98.5 3.6E-06 7.9E-11 78.5 13.7 86 103-208 95-181 (185)
45 cd03440 hot_dog The hotdog fol 98.4 6.8E-06 1.5E-10 63.5 12.9 95 293-398 3-99 (100)
46 PF01643 Acyl-ACP_TE: Acyl-ACP 98.4 0.00013 2.8E-09 71.7 23.7 215 97-363 7-233 (261)
47 TIGR02799 thio_ybgC tol-pal sy 98.4 1.1E-05 2.3E-10 69.5 13.5 110 293-414 3-123 (126)
48 cd00556 Thioesterase_II Thioes 98.3 6.4E-06 1.4E-10 67.7 10.3 85 108-207 14-98 (99)
49 PF13279 4HBT_2: Thioesterase- 98.2 4.9E-05 1.1E-09 65.0 14.4 107 297-412 1-115 (121)
50 PF14539 DUF4442: Domain of un 98.2 3.4E-05 7.5E-10 67.9 13.6 109 281-399 21-131 (132)
51 cd00556 Thioesterase_II Thioes 98.2 2.2E-05 4.9E-10 64.4 11.4 84 305-399 14-98 (99)
52 PRK10800 acyl-CoA thioesterase 98.1 0.00013 2.8E-09 63.5 15.5 110 292-412 4-123 (130)
53 TIGR00051 acyl-CoA thioester h 98.1 0.00011 2.3E-09 62.1 13.1 106 295-411 2-117 (117)
54 COG0824 FcbC Predicted thioest 98.1 0.00017 3.7E-09 64.0 14.8 113 289-414 4-127 (137)
55 TIGR00189 tesB acyl-CoA thioes 97.8 0.011 2.5E-07 57.9 24.8 81 109-210 21-101 (271)
56 PRK00006 fabZ (3R)-hydroxymyri 97.8 0.0015 3.3E-08 58.1 16.6 111 87-210 36-146 (147)
57 PF09500 YiiD_Cterm: Putative 97.8 0.00049 1.1E-08 61.6 13.2 111 283-401 22-143 (144)
58 PF14539 DUF4442: Domain of un 97.8 0.00038 8.2E-09 61.3 11.7 106 79-206 22-130 (132)
59 cd01288 FabZ FabZ is a 17kD be 97.7 0.0021 4.6E-08 55.5 15.4 110 87-208 21-130 (131)
60 PRK10526 acyl-CoA thioesterase 97.6 0.052 1.1E-06 54.1 25.8 82 108-210 31-112 (286)
61 KOG4781 Uncharacterized conser 97.5 0.0014 3.1E-08 62.2 12.5 92 286-383 122-214 (237)
62 cd03445 Thioesterase_II_repeat 97.4 0.0029 6.2E-08 52.5 11.6 79 107-206 14-92 (94)
63 PRK07531 bifunctional 3-hydrox 97.4 0.0035 7.5E-08 67.2 14.8 116 286-412 341-465 (495)
64 PRK00006 fabZ (3R)-hydroxymyri 97.4 0.012 2.7E-07 52.3 16.2 109 283-402 28-146 (147)
65 cd03445 Thioesterase_II_repeat 97.3 0.0037 8E-08 51.8 11.2 79 304-398 14-92 (94)
66 cd01288 FabZ FabZ is a 17kD be 97.3 0.017 3.6E-07 49.8 15.2 105 285-400 15-130 (131)
67 COG4109 Predicted transcriptio 97.2 0.00069 1.5E-08 68.0 6.6 144 41-205 276-427 (432)
68 PF13622 4HBT_3: Thioesterase- 97.2 0.0073 1.6E-07 58.4 13.2 83 108-211 9-91 (255)
69 cd03449 R_hydratase (R)-hydrat 96.9 0.025 5.4E-07 48.4 12.8 79 110-207 47-127 (128)
70 TIGR01750 fabZ beta-hydroxyacy 96.9 0.06 1.3E-06 47.4 15.2 112 86-207 28-139 (140)
71 PF13622 4HBT_3: Thioesterase- 96.8 0.017 3.6E-07 55.9 12.4 82 305-403 9-91 (255)
72 cd03449 R_hydratase (R)-hydrat 96.7 0.024 5.3E-07 48.4 11.3 81 306-398 46-126 (128)
73 PLN02868 acyl-CoA thioesterase 96.7 0.36 7.8E-06 50.5 22.0 82 108-210 157-238 (413)
74 PLN02864 enoyl-CoA hydratase 96.6 0.064 1.4E-06 54.1 15.1 62 143-211 93-158 (310)
75 KOG4781 Uncharacterized conser 96.5 0.01 2.2E-07 56.5 7.9 90 84-187 123-212 (237)
76 cd00493 FabA_FabZ FabA/Z, beta 96.4 0.32 6.9E-06 41.6 16.4 110 87-206 20-129 (131)
77 PF09500 YiiD_Cterm: Putative 96.4 0.04 8.7E-07 49.4 10.8 109 79-209 21-143 (144)
78 PF07977 FabA: FabA-like domai 96.3 0.33 7.2E-06 42.6 16.1 108 86-202 25-137 (138)
79 TIGR01750 fabZ beta-hydroxyacy 96.2 0.21 4.5E-06 43.9 14.4 106 283-399 21-139 (140)
80 TIGR00189 tesB acyl-CoA thioes 96.1 0.05 1.1E-06 53.3 10.8 80 306-401 21-100 (271)
81 cd03451 FkbR2 FkbR2 is a Strep 96.0 0.061 1.3E-06 47.4 10.0 88 307-400 55-142 (146)
82 cd00493 FabA_FabZ FabA/Z, beta 95.9 0.63 1.4E-05 39.7 15.6 82 283-364 12-106 (131)
83 COG1946 TesB Acyl-CoA thioeste 95.8 0.5 1.1E-05 46.9 16.2 87 103-210 25-112 (289)
84 COG4109 Predicted transcriptio 95.8 0.064 1.4E-06 54.3 10.1 82 295-382 337-418 (432)
85 cd03450 NodN NodN (nodulation 95.7 0.11 2.4E-06 46.7 10.2 73 307-382 58-133 (149)
86 cd03441 R_hydratase_like (R)-h 95.6 0.079 1.7E-06 45.0 8.9 74 304-383 41-114 (127)
87 cd03446 MaoC_like MoaC_like 95.6 0.12 2.5E-06 45.2 10.1 75 307-383 52-126 (140)
88 cd03447 FAS_MaoC FAS_MaoC, the 95.6 0.27 5.9E-06 42.8 12.2 53 307-363 44-97 (126)
89 PRK13188 bifunctional UDP-3-O- 95.5 0.63 1.4E-05 49.5 16.7 114 85-210 347-461 (464)
90 PF01575 MaoC_dehydratas: MaoC 95.5 0.14 3.1E-06 44.0 9.9 56 306-364 51-106 (122)
91 cd03455 SAV4209 SAV4209 is a S 95.4 0.23 5E-06 42.6 11.1 66 307-383 45-110 (123)
92 cd01287 FabA FabA, beta-hydrox 95.4 1 2.3E-05 40.5 15.6 115 87-209 28-147 (150)
93 KOG3016 Acyl-CoA thioesterase 95.4 1.6 3.5E-05 43.3 17.8 81 106-207 35-115 (294)
94 cd01289 FabA_like Domain of un 94.9 1.8 3.9E-05 38.2 15.5 91 107-207 43-135 (138)
95 cd01289 FabA_like Domain of un 94.7 2.3 4.9E-05 37.6 15.6 108 283-400 19-136 (138)
96 cd03452 MaoC_C MaoC_C The C-t 94.7 0.28 6.1E-06 43.4 9.7 84 307-397 52-135 (142)
97 PRK10526 acyl-CoA thioesterase 94.7 0.31 6.8E-06 48.5 11.0 82 304-401 30-111 (286)
98 PRK13188 bifunctional UDP-3-O- 94.4 1.4 3.1E-05 46.8 15.7 111 282-402 341-461 (464)
99 cd03446 MaoC_like MoaC_like 94.2 0.41 8.8E-06 41.7 9.7 55 145-206 78-138 (140)
100 cd03454 YdeM YdeM is a Bacillu 93.9 0.76 1.6E-05 40.2 10.7 59 334-397 76-136 (140)
101 PF07977 FabA: FabA-like domai 93.8 1.6 3.5E-05 38.2 12.6 71 291-361 27-112 (138)
102 PRK13692 (3R)-hydroxyacyl-ACP 93.7 0.56 1.2E-05 42.6 9.7 57 150-213 89-149 (159)
103 COG0764 FabA 3-hydroxymyristoy 93.7 1.4 3.1E-05 39.6 12.0 85 307-401 56-144 (147)
104 cd03441 R_hydratase_like (R)-h 93.6 0.97 2.1E-05 38.2 10.6 67 109-186 43-113 (127)
105 cd03453 SAV4209_like SAV4209_l 93.6 1.7 3.6E-05 37.5 12.2 52 307-363 46-97 (127)
106 cd03455 SAV4209 SAV4209 is a S 93.3 1.5 3.2E-05 37.5 11.3 77 111-206 46-122 (123)
107 PLN02868 acyl-CoA thioesterase 92.8 0.65 1.4E-05 48.6 9.8 83 303-401 155-237 (413)
108 COG2030 MaoC Acyl dehydratase 92.7 0.79 1.7E-05 41.6 9.0 31 334-364 94-124 (159)
109 COG3884 FatA Acyl-ACP thioeste 92.6 6.4 0.00014 38.0 15.1 166 140-364 53-221 (250)
110 PF01643 Acyl-ACP_TE: Acyl-ACP 92.5 0.93 2E-05 44.4 9.9 90 97-206 169-259 (261)
111 COG0764 FabA 3-hydroxymyristoy 92.4 8 0.00017 34.8 16.0 88 111-210 57-145 (147)
112 PRK13692 (3R)-hydroxyacyl-ACP 92.1 0.98 2.1E-05 41.0 8.9 57 339-401 89-145 (159)
113 PRK13691 (3R)-hydroxyacyl-ACP 91.7 1.7 3.6E-05 39.8 10.0 55 150-211 89-147 (166)
114 cd03451 FkbR2 FkbR2 is a Strep 91.1 1.2 2.6E-05 39.1 8.2 56 147-209 81-143 (146)
115 PRK08190 bifunctional enoyl-Co 90.4 3.1 6.7E-05 44.4 12.0 83 307-401 60-142 (466)
116 cd03454 YdeM YdeM is a Bacillu 90.3 1.9 4.1E-05 37.6 8.7 56 145-207 76-138 (140)
117 PLN02370 acyl-ACP thioesterase 90.0 12 0.00026 39.4 15.7 112 291-412 140-267 (419)
118 PRK13691 (3R)-hydroxyacyl-ACP 89.9 2.6 5.7E-05 38.6 9.6 60 339-404 89-148 (166)
119 cd03447 FAS_MaoC FAS_MaoC, the 89.7 8.7 0.00019 33.3 12.3 50 151-206 74-123 (126)
120 cd03452 MaoC_C MaoC_C The C-t 89.4 2.3 4.9E-05 37.6 8.5 54 147-207 78-137 (142)
121 KOG3016 Acyl-CoA thioesterase 89.2 2 4.4E-05 42.6 8.7 97 303-415 35-133 (294)
122 COG5496 Predicted thioesterase 89.0 13 0.00029 32.5 12.4 85 110-211 30-116 (130)
123 PF03756 AfsA: A-factor biosyn 88.6 15 0.00033 31.7 15.3 88 107-207 39-131 (132)
124 cd03453 SAV4209_like SAV4209_l 88.4 12 0.00025 32.1 12.2 41 147-188 71-115 (127)
125 cd03448 HDE_HSD HDE_HSD The R 88.2 5 0.00011 34.7 9.6 49 308-359 47-95 (122)
126 PF01575 MaoC_dehydratas: MaoC 88.0 6.3 0.00014 33.6 10.2 66 110-186 52-117 (122)
127 cd03450 NodN NodN (nodulation 87.6 3.8 8.2E-05 36.8 8.8 26 148-173 88-113 (149)
128 TIGR01749 fabA beta-hydroxyacy 86.4 26 0.00057 32.1 14.3 95 87-188 51-149 (169)
129 PF13452 MaoC_dehydrat_N: N-te 86.4 3.7 8E-05 35.3 7.9 51 332-383 74-124 (132)
130 PRK05174 3-hydroxydecanoyl-(ac 85.4 30 0.00065 31.8 15.9 107 87-208 54-164 (172)
131 PRK13693 (3R)-hydroxyacyl-ACP 85.4 16 0.00035 32.3 11.6 52 307-363 56-112 (142)
132 PRK11563 bifunctional aldehyde 84.8 4.4 9.4E-05 45.3 9.3 47 336-383 613-659 (675)
133 TIGR02278 PaaN-DH phenylacetic 84.1 4.8 0.0001 45.0 9.2 27 337-363 602-628 (663)
134 COG1946 TesB Acyl-CoA thioeste 83.9 4.2 9.2E-05 40.4 7.7 87 299-401 24-111 (289)
135 cd01287 FabA FabA, beta-hydrox 82.4 37 0.0008 30.5 14.8 90 290-380 28-132 (150)
136 PRK08190 bifunctional enoyl-Co 81.6 21 0.00046 38.1 12.6 66 150-222 88-156 (466)
137 COG3884 FatA Acyl-ACP thioeste 80.6 3.2 6.9E-05 40.0 5.3 65 97-174 156-220 (250)
138 cd03444 Thioesterase_II_repeat 76.8 37 0.0008 28.2 10.2 82 111-203 17-99 (104)
139 PF13452 MaoC_dehydrat_N: N-te 75.4 15 0.00033 31.4 7.8 33 143-176 74-106 (132)
140 cd03448 HDE_HSD HDE_HSD The R 69.9 58 0.0013 28.0 10.1 31 151-184 76-106 (122)
141 PRK13693 (3R)-hydroxyacyl-ACP 67.6 88 0.0019 27.6 11.7 39 148-187 82-127 (142)
142 COG5496 Predicted thioesterase 66.3 92 0.002 27.4 14.9 102 290-402 6-115 (130)
143 PLN02864 enoyl-CoA hydratase 63.1 61 0.0013 32.7 10.1 60 339-403 99-158 (310)
144 COG2030 MaoC Acyl dehydratase 61.6 52 0.0011 29.6 8.5 28 146-173 95-122 (159)
145 PRK11563 bifunctional aldehyde 59.7 24 0.00052 39.5 7.1 51 148-205 614-670 (675)
146 TIGR02278 PaaN-DH phenylacetic 59.1 28 0.0006 39.0 7.4 50 149-205 603-658 (663)
147 TIGR01749 fabA beta-hydroxyacy 57.2 1.6E+02 0.0034 27.0 12.9 89 290-380 51-147 (169)
148 PF14765 PS-DH: Polyketide syn 56.2 1.9E+02 0.0042 27.8 23.7 263 89-401 19-289 (295)
149 PRK05174 3-hydroxydecanoyl-(ac 46.4 2.4E+02 0.0051 25.9 13.5 89 290-380 54-150 (172)
150 COG3908 Uncharacterized protei 42.1 45 0.00098 26.0 3.9 53 174-236 7-59 (77)
151 PF14765 PS-DH: Polyketide syn 34.3 4.3E+02 0.0092 25.4 11.5 63 143-211 228-291 (295)
152 PF09458 H_lectin: H-type lect 33.4 2.1E+02 0.0046 21.6 8.9 55 143-210 17-71 (72)
153 cd03444 Thioesterase_II_repeat 33.2 2.8E+02 0.006 22.9 10.1 77 308-394 17-98 (104)
154 PF03756 AfsA: A-factor biosyn 27.7 3.8E+02 0.0083 22.8 14.1 106 288-400 19-132 (132)
155 TIGR02728 spore_gerQ spore coa 25.0 2.8E+02 0.0061 22.2 5.9 62 327-403 13-74 (82)
No 1
>PLN02647 acyl-CoA thioesterase
Probab=100.00 E-value=6.2e-106 Score=826.63 Aligned_cols=434 Identities=83% Similarity=1.228 Sum_probs=412.7
Q ss_pred CCCCCCCCcccccccccCCCCCCCCCCCCCCCcccccccccCCcccccchhhHHHHHhhHhhhhcCCCCCCCCCCCcCCC
Q 013560 1 MEFNSSSPRTIPVVSTFASPFGSSSPALNEDPKTNRKPISLWPGMYHSPVTNALWEARSKIFERLLDPPKDAPPQSELLT 80 (441)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~r~~~~~~~~~~~~~~~~~~~l~~ 80 (441)
+++++++++|||++|++++|.+.......|....+|||++|||||||||||++||++|++++|+..+++.++++|.+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 80 (437)
T PLN02647 1 PEFASNSPRPIPVVSTFASPSLSPGNGSIDAGSSTRKPLSLWPGMYHSPVTNALWEARSSIFERLLDPPKDAPPQSELLT 80 (437)
T ss_pred CCCCCCCCCcceeeecccCcccCCCCcccCCCccccCccccCCccccChHHHHHHHHHHHHhhhccCcccccCccccccc
Confidence 47899999999999999999888777778888889999999999999999999999999999998888889999999999
Q ss_pred cCCCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCC
Q 013560 81 KTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISV 160 (441)
Q Consensus 81 r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~ 160 (441)
|+|++|++++.+||++|..|+++|+|++|+||||+||+|||.+|+++|++||+.+++.+.|+.+|||+||+|+|++|+++
T Consensus 81 k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~ 160 (437)
T PLN02647 81 KTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIRV 160 (437)
T ss_pred cccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCcC
Confidence 99999999999999999999999999999999999999999999999999999867788888999999999999999999
Q ss_pred CCEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeeccccCCCCHHHHHHHHHHHHHH
Q 013560 161 DIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRLSPQTEREKSLFEEAEARS 240 (441)
Q Consensus 161 gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~l~p~t~~E~~l~~~a~~r~ 240 (441)
|++|++.|+|+|+|+|||||.++|++++.+..++...++++|+|||||+|+++|||+|||+|+|+|++|+++|++|++|+
T Consensus 161 g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~~~gkp~pVp~l~pete~Ek~~~e~a~~R~ 240 (437)
T PLN02647 161 DVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDSKTGKSAPVNRLSPETEEEKLLFEEAEARN 240 (437)
T ss_pred CcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcCCCCCeeeCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999864334567789999999999999878999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHhcccccCCCCcccCCceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHH
Q 013560 241 KLRKRKTGGDRRELDNGEVNRLEALLAEGRVICDMPALADRNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFEL 320 (441)
Q Consensus 241 ~~R~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~p~~~~~~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~ 320 (441)
++|+++|.+....++++|.++||+||.+++.++++|.++|+|++||++|++++.++|+|+|+|.||+||||+||+||||+
T Consensus 241 ~~Rk~~r~~~~~~~~~~e~~~l~~l~~~~~~~~~~p~l~~~~~v~m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~ 320 (437)
T PLN02647 241 KLRKKKRGEQKREFENGEAERLEALLAEGRVFCDMPALADRNSILIRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFEL 320 (437)
T ss_pred HHHHHHHHhhcccCCchHHHHHHHHHHhccccccCcccCCccceeccccceEEEEEeCccccCCCCcEeHHHHHHHHHHH
Confidence 99988887776666677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEE
Q 013560 321 AFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTV 400 (441)
Q Consensus 321 A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~ 400 (441)
||++|++|+++++||+++|+|+|++||++||+|+++|+|+|+|.+++++++|+|+|.|++.++++++++++|+|||||++
T Consensus 321 A~i~A~r~a~~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva 400 (437)
T PLN02647 321 AFSTAYAFAGLRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTV 400 (437)
T ss_pred HHHHHHHHcCCceEEEEecceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999989999999999999999999998999999999999
Q ss_pred ecc--CCCCccCCccccCCHHHHHHHHHHHHHHHHh
Q 013560 401 SKA--VTNGFRIRNVVPGTQEEARHILERMDAKALQ 434 (441)
Q Consensus 401 ~d~--~~~~~~v~~v~P~t~~E~~~~~~a~~r~~~~ 434 (441)
.|+ +|+|.+||+|+|+||+|+++|+++.+|+.+.
T Consensus 401 ~d~~~~g~p~~Vp~V~P~T~eE~~~~~e~~~~~~~~ 436 (437)
T PLN02647 401 RPEAAMKNGFKIRNVVPATEEEARRILERMDAEHLV 436 (437)
T ss_pred eccccCCCCccCCeeecCCHHHHHHHHHhcCccccc
Confidence 987 7899999999999999999999999998764
No 2
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=100.00 E-value=5.2e-57 Score=447.09 Aligned_cols=313 Identities=42% Similarity=0.625 Sum_probs=266.6
Q ss_pred CcCCCcCCCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCC-CCCCCCceEEEEEEeeEEE
Q 013560 76 SELLTKTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDD-DSMTRPLLLVTASVDKIAL 154 (441)
Q Consensus 76 ~~l~~r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~-~~~~~p~~~VTasvD~i~F 154 (441)
..|++++| +|+.+...| +.|++||.+|.+|+ |+||..+ .+.+.|+.+|||+||+|+|
T Consensus 14 ~~lp~~a~-~s~~~~~~p------------------rigk~lE~ld~~a~---~~hc~~~~~~~~~p~~~VtAsV~~i~f 71 (357)
T KOG2763|consen 14 EVLPPRAN-HSGNTFVGP------------------RIGKILEDLDALAV---YRHCSEAEEGATLPRTIVTASVDRIDF 71 (357)
T ss_pred cCCCCccc-cccceecch------------------HHHHHHHHhhhhhh---eeecccccccCccceEEEEeeEEEEEe
Confidence 36777888 777776555 66777777776665 9999874 5778899999999999999
Q ss_pred ccCCCCC-CEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeeccccCCCCHHHHHHH
Q 013560 155 KKSISVD-IDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRLSPQTEREKSLF 233 (441)
Q Consensus 155 ~~Pi~~g-d~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~l~p~t~~E~~l~ 233 (441)
.+|...| .++.+.|.|+|+|+|||||.+.|.|+| ..++...++++|+||||++|++++ ++|+|++.|.|+.|+.+|
T Consensus 72 ~~~~~~~~~d~i~~a~Vt~a~~sSMEv~i~V~q~~--~~~~~~~~~~kA~f~fVard~~~~-~~~l~~l~p~te~e~~~~ 148 (357)
T KOG2763|consen 72 EKPSEVGQVDIIIVAKVTWAGKSSMEVSIYVMQED--LATGEKSLVLKATFTFVARDATNG-KAPLNGLTPETEDEKVLY 148 (357)
T ss_pred eccccccceeEEEEEEEEeccccceEEEEEEEEeh--hccchhhheeeeEEEEEEecCCCC-ccccCCccCCCCccceeh
Confidence 9977777 789999999999999999999999955 457788999999999999999877 899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcccccCCCCc-ccCCceeecCCeEEEEEEeCCCCCCCCCCCcHHH
Q 013560 234 EEAEARSKLRKRKTGGDRRELDNGEVNRLEALLAEGRVICDMPAL-ADRNSILLRDTRLENALICQPQQRNIHGRIFGGF 312 (441)
Q Consensus 234 ~~a~~r~~~R~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~p~~-~~~~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~ 312 (441)
++|++|++.|+........ +.++..+.+...++|++.+ ++++++||+||.+++..+|+|+|+|+||++||||
T Consensus 149 ~~aeer~k~R~~~~~~~~~-------~~~~~~l~~~~~~~d~~~lv~~~~~~~m~dT~v~sseI~~P~~~N~~G~iFGGf 221 (357)
T KOG2763|consen 149 REAEERNKVRKVSEDISSC-------KQLEEELAERWVPGDMVALVLSPKMVWMKDTKVSSSEICQPEHRNIHGTIFGGF 221 (357)
T ss_pred hhHHHhhhhhccccccchh-------HHHHHHhhcccccCCceeeecCCcceEeeccceeEEEeecCcccCccCceehHH
Confidence 9999999998775443222 3455666777778899986 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEE
Q 013560 313 LMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSN 392 (441)
Q Consensus 313 lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n 392 (441)
||++|+|+|+++|++||++++.+.+||+|+|.+||.+|++|+++|.|+||..++ .+++|++.+.+.+.+.+..++++
T Consensus 222 lMrka~ElA~~~A~~f~~~~p~~rsVD~i~F~~pVdvG~~L~f~s~V~yT~~k~---~~vqv~~~~~v~s~~~r~~~i~~ 298 (357)
T KOG2763|consen 222 LMRKALELAEITAKLFCKGRPATRSVDDIEFQKPVDVGCVLTFSSFVTYTDNKS---IYVQVKAVASVDSSQGRSREITN 298 (357)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEechhhccCcceeeeEEEEeeEEEEecCCc---eeEEEEEeccccccccccceecc
Confidence 999999999999999999999999999999999999999999999999999854 48999999999999888889999
Q ss_pred EEEEEEEEeccCCCCccCCccccCCHHHHHHH
Q 013560 393 TFYFTFTVSKAVTNGFRIRNVVPGTQEEARHI 424 (441)
Q Consensus 393 ~~~fTfv~~d~~~~~~~v~~v~P~t~~E~~~~ 424 (441)
.|||||-+.+. ++-.+++...+..+.+..++
T Consensus 299 ~F~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~ 329 (357)
T KOG2763|consen 299 AFHFTFSEERV-GNLLPVGFYGESEEDEKGRR 329 (357)
T ss_pred ceeeechhhhc-cccCCCccccceeeccchhe
Confidence 99999976532 33334444444444443333
No 3
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=100.00 E-value=3e-35 Score=263.28 Aligned_cols=147 Identities=24% Similarity=0.299 Sum_probs=141.2
Q ss_pred cCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccC
Q 013560 287 RDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELEN 366 (441)
Q Consensus 287 ~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~ 366 (441)
.++.+....+++|.|.|++|++|||.||+|+|++|+++|.+||++++||+++|+|+|++||++||+|++.|+|+|+|+
T Consensus 10 ~~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~Gr-- 87 (157)
T COG1607 10 PEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGR-- 87 (157)
T ss_pred CCceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEEEEEEEEeecCc--
Confidence 378888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEeccCCCCccCCccccCCHHHHHHHHHHHHHHHHhhhhc
Q 013560 367 PDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKAVTNGFRIRNVVPGTQEEARHILERMDAKALQLSKG 438 (441)
Q Consensus 367 ~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~~~~~~~v~~v~P~t~~E~~~~~~a~~r~~~~~~~~ 438 (441)
+||+|.|+|++.+..+++..+++.++||||++|++|+|.+||++.|++++|+.+|..|.+|++.|+.+.
T Consensus 88 ---TSm~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~~gkP~~vp~~~~~~~~e~~~~~~A~~r~~~r~~~~ 156 (157)
T COG1607 88 ---TSMEVGVEVWAEDIRSGERRLATSAYFTFVAVDEDGKPTPVPREEPETEEEKRRYAAAGARREERAERE 156 (157)
T ss_pred ---ccEEEEEEEEEecccCCcceEeeeEEEEEEEECCCCCcccCCccCCccHHHHhhhhhhHHHHHHHHHhc
Confidence 489999999999999999899999999999999999999999999999999999999999999988764
No 4
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=100.00 E-value=4.8e-33 Score=249.09 Aligned_cols=138 Identities=31% Similarity=0.445 Sum_probs=130.6
Q ss_pred cccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccE
Q 013560 98 DILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSS 177 (441)
Q Consensus 98 ~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSS 177 (441)
..+.|.++|++|++|||++|.|||.+|+++|.+||+. .+||+++|+|+|.+|+++||.|.+.|+|+++||||
T Consensus 18 ~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~--------~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTS 89 (157)
T COG1607 18 TLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGG--------RVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTS 89 (157)
T ss_pred EEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCC--------eEEEEEeceEEEccccccCcEEEEEEEEeecCccc
Confidence 4677899999999999999999999999999999998 79999999999999999999999999999999999
Q ss_pred EEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013560 178 IEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRLSPQTEREKSLFEEAEARSKLRKRK 246 (441)
Q Consensus 178 meV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~l~p~t~~E~~l~~~a~~r~~~R~~~ 246 (441)
|+|.|+++.++ ..+++..++++|+|||||+|. +|||.|||++.|++++|+.+++.|.+|++.|++.
T Consensus 90 m~V~Vev~~~~--~~~~~~~~~t~~~ft~VAvd~-~gkP~~vp~~~~~~~~e~~~~~~A~~r~~~r~~~ 155 (157)
T COG1607 90 MEVGVEVWAED--IRSGERRLATSAYFTFVAVDE-DGKPTPVPREEPETEEEKRRYAAAGARREERAER 155 (157)
T ss_pred EEEEEEEEEec--ccCCcceEeeeEEEEEEEECC-CCCcccCCccCCccHHHHhhhhhhHHHHHHHHHh
Confidence 99999999998 456778889999999999998 6999999999999999999999999999988764
No 5
>PLN02647 acyl-CoA thioesterase
Probab=99.96 E-value=7.1e-29 Score=256.07 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=134.9
Q ss_pred eeecCCeEEEEE------EeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCC--------CcEEEEEceEEEcCccCc
Q 013560 284 ILLRDTRLENAL------ICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGL--------MPCFLEVDHVDFLRPVDV 349 (441)
Q Consensus 284 v~~~dt~~~~~~------~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~~--------~~vt~~vd~i~F~~Pv~v 349 (441)
..|++++.+..+ .++|+++|.+|++|||.||.|+|++|+++|++||+. .+||++||+|+|++|+++
T Consensus 81 k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~ 160 (437)
T PLN02647 81 KTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIRV 160 (437)
T ss_pred cccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCcC
Confidence 356789999999 567777999999999999999999999999999988 699999999999999999
Q ss_pred CcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeC--CCcceeEEEEEEEEEEEecc-CCCCccCCccccCCHHHHHHHHH
Q 013560 350 GDFLRFKSCVLYTELENPDQPLINIEVVAHVTRP--EFRSSEVSNTFYFTFTVSKA-VTNGFRIRNVVPGTQEEARHILE 426 (441)
Q Consensus 350 Gd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~--~~~~~~~~n~~~fTfv~~d~-~~~~~~v~~v~P~t~~E~~~~~~ 426 (441)
|++|++.|+|+|+|++ ||+|.|.+...+. .+++..++++++||||++|+ +|+|.+||+++|+|++|+++|.+
T Consensus 161 g~~v~l~g~Vt~vGrS-----SMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~~~gkp~pVp~l~pete~Ek~~~e~ 235 (437)
T PLN02647 161 DVDLKIVGAVTWVGRS-----SMEIQLEVIQPTKDESNTSDSVALTANFTFVARDSKTGKSAPVNRLSPETEEEKLLFEE 235 (437)
T ss_pred CcEEEEEEEEEEecCC-----eEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcCCCCCeeeCCCCCCCCHHHHHHHHH
Confidence 9999999999999985 6777777766543 34567799999999999998 79999999999999999999999
Q ss_pred HHHHHHHhhhhc
Q 013560 427 RMDAKALQLSKG 438 (441)
Q Consensus 427 a~~r~~~~~~~~ 438 (441)
|++|+++|+.+|
T Consensus 236 a~~R~~~Rk~~r 247 (437)
T PLN02647 236 AEARNKLRKKKR 247 (437)
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 6
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.96 E-value=8.4e-28 Score=212.01 Aligned_cols=120 Identities=23% Similarity=0.236 Sum_probs=109.7
Q ss_pred CCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCC
Q 013560 288 DTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENP 367 (441)
Q Consensus 288 dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~ 367 (441)
++.+....+++|+|+|.+|++|||+||+|+|++|+++|.++++.+++|+++|+|+|++|+++||+|+++|+|+|+|++
T Consensus 9 ~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~s-- 86 (133)
T PRK10694 9 QGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTT-- 86 (133)
T ss_pred CCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEccCc--
Confidence 667888899999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCeEEEEEEEEEeeCCC---cceeEEEEEEEEEEEeccCCCCccCCc
Q 013560 368 DQPLINIEVVAHVTRPEF---RSSEVSNTFYFTFTVSKAVTNGFRIRN 412 (441)
Q Consensus 368 ~~~~~~VeV~~~v~~~~~---~~~~~~n~~~fTfv~~d~~~~~~~v~~ 412 (441)
||.|++.+++.+... ++..++++++||||++|++|+|.++|+
T Consensus 87 ---S~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~~g~p~~vp~ 131 (133)
T PRK10694 87 ---SISINIEVWVKKVASEPIGQRYKATEALFTYVAVDPEGKPRALPV 131 (133)
T ss_pred ---eEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECCCCCEEeCCC
Confidence 788888887755432 567789999999999999999988874
No 7
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.92 E-value=2.6e-24 Score=189.86 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=103.9
Q ss_pred cccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccE
Q 013560 98 DILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSS 177 (441)
Q Consensus 98 ~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSS 177 (441)
..+.|+|+|++|++|||.||+|+|++|+++|.++++. .++|+++|.|+|++|+++||.|++.++|+++|+||
T Consensus 16 ~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~~--------~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~sS 87 (133)
T PRK10694 16 TLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHG--------RVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTTS 87 (133)
T ss_pred EEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcCC--------ceEEEEECceEECCCcccCcEEEEEEEEEEccCce
Confidence 3578899999999999999999999999999999986 69999999999999999999999999999999999
Q ss_pred EEEEEEEEEccccc-cCCCceEEEEEEEEEEEeeCCCCceeeccc
Q 013560 178 IEIQLEVIQSTKEV-SDTSDSVVLTANFIFVARDSKTGKAAPVNR 221 (441)
Q Consensus 178 meV~v~v~~~~~~~-~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~ 221 (441)
|+|.++++.++... ..++..++++|+||||++|. +|+|.|||+
T Consensus 88 ~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~-~g~p~~vp~ 131 (133)
T PRK10694 88 ISINIEVWVKKVASEPIGQRYKATEALFTYVAVDP-EGKPRALPV 131 (133)
T ss_pred EEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECC-CCCEEeCCC
Confidence 99999999754211 13567889999999999997 999999985
No 8
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.73 E-value=1.6e-16 Score=136.16 Aligned_cols=122 Identities=31% Similarity=0.455 Sum_probs=104.7
Q ss_pred eecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeec
Q 013560 285 LLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTEL 364 (441)
Q Consensus 285 ~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~ 364 (441)
+++++..+..+.+.|+|+|.+|++|||.+++++|++++.++..+.+...+++.+++++|++|++.||.|.++++|++.|+
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~ 81 (123)
T cd03442 2 PMEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGR 81 (123)
T ss_pred CCCccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEecC
Confidence 57789999999999999999999999999999999999888777666788999989999999999999999999999998
Q ss_pred cCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEeccCCCCccCC
Q 013560 365 ENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKAVTNGFRIR 411 (441)
Q Consensus 365 ~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~~~~~~~v~ 411 (441)
+ ++.+++.++..+...++.++++.+.+||+++|..++|.++|
T Consensus 82 ~-----~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~~~~~~~~~p 123 (123)
T cd03442 82 T-----SMEVGVEVEAEDPLTGERRLVTSAYFTFVALDEDGKPRPVP 123 (123)
T ss_pred C-----eEEEEEEEEEecCCCCcEEEEEEEEEEEEEECCCCCeeeCC
Confidence 5 66777666654432345679999999999998767766655
No 9
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.72 E-value=3.3e-16 Score=134.30 Aligned_cols=121 Identities=31% Similarity=0.429 Sum_probs=102.1
Q ss_pred CCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCC
Q 013560 83 SSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDI 162 (441)
Q Consensus 83 ~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd 162 (441)
+++++.+. ...+++.|+|+.|++|||.|++++|+++++.+..+... .++++.+++++|++|+..||
T Consensus 3 ~~~~~~~~------~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~~--------~~~~~~~~~~~f~~p~~~gd 68 (123)
T cd03442 3 MEDTELST------RELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGG--------RVVTASVDRIDFLKPVRVGD 68 (123)
T ss_pred CCccceEE------EEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhCC--------cEEEEEECceEEcCccccCc
Confidence 45555665 34678899999999999999999999998877665432 47888898899999999999
Q ss_pred EEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeecc
Q 013560 163 DLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVN 220 (441)
Q Consensus 163 ~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp 220 (441)
.|.++++|.++|++|+++.+++++.+. .++...++++|.+++|++|. +++|.++|
T Consensus 69 ~l~i~~~v~~~g~~~~~~~~~i~~~~~--~~~~~~~~a~~~~~~v~~~~-~~~~~~~p 123 (123)
T cd03442 69 VVELSARVVYTGRTSMEVGVEVEAEDP--LTGERRLVTSAYFTFVALDE-DGKPRPVP 123 (123)
T ss_pred EEEEEEEEEEecCCeEEEEEEEEEecC--CCCcEEEEEEEEEEEEEECC-CCCeeeCC
Confidence 999999999999999999999998652 12346899999999999995 78998886
No 10
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=99.71 E-value=3.3e-17 Score=163.53 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=126.7
Q ss_pred eEEEEEEeCCCCCCCCCCCcHH-HHHHHHHHHHHHHHHhhcCC---------CcEEEEEceEEEcCccCcCc-EEEEEEE
Q 013560 290 RLENALICQPQQRNIHGRIFGG-FLMLRAFELAFSTAYAFAGL---------MPCFLEVDHVDFLRPVDVGD-FLRFKSC 358 (441)
Q Consensus 290 ~~~~~~~v~P~~~N~~G~vfGG-~lm~~ade~A~~~A~~~~~~---------~~vt~~vd~i~F~~Pv~vGd-~l~~~a~ 358 (441)
..+....+.|.+.|..|..||| .|++|+++++.++.++||.. .+||+++|.|+|.+|..+|+ .+.+.|.
T Consensus 8 ~~~~~~~~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~ 87 (357)
T KOG2763|consen 8 AVESKREVLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAK 87 (357)
T ss_pred hhhhcccCCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccceeEEEEEE
Confidence 4455556999999999999999 89999999999999888864 36999999999999999994 5667899
Q ss_pred EeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEeccCCCCccCCccccCCHHHHHHHHHHHHHHHHhhhhc
Q 013560 359 VLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKAVTNGFRIRNVVPGTQEEARHILERMDAKALQLSKG 438 (441)
Q Consensus 359 Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~~~~~~~v~~v~P~t~~E~~~~~~a~~r~~~~~~~~ 438 (441)
|+|+|++ ||+|.|.+...|..+++..+++++.||||++|+...+.+++++.|+++.|+.+|.+|.+|++.|+...
T Consensus 88 Vt~a~~s-----SMEv~i~V~q~~~~~~~~~~~~kA~f~fVard~~~~~~~l~~l~p~te~e~~~~~~aeer~k~R~~~~ 162 (357)
T KOG2763|consen 88 VTWAGKS-----SMEVSIYVMQEDLATGEKSLVLKATFTFVARDATNGKAPLNGLTPETEDEKVLYREAEERNKVRKVSE 162 (357)
T ss_pred EEecccc-----ceEEEEEEEEehhccchhhheeeeEEEEEEecCCCCccccCCccCCCCccceehhhHHHhhhhhcccc
Confidence 9999985 67777777767788888889999999999999987799999999999999999999999999998653
No 11
>PLN02322 acyl-CoA thioesterase
Probab=99.47 E-value=1.5e-12 Score=117.38 Aligned_cols=112 Identities=19% Similarity=0.132 Sum_probs=91.1
Q ss_pred CceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcC-CCcEEEEEceEEEcCccCcCcEEEEEEEEe
Q 013560 282 NSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAG-LMPCFLEVDHVDFLRPVDVGDFLRFKSCVL 360 (441)
Q Consensus 282 ~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~-~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv 360 (441)
..+.++++++...+.+.|+++|++|.+|||.++.++|.+++++++...+ ..++|+.+ +|+|++|++.|+.|+++|+|+
T Consensus 19 ~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel-~infLrpa~~G~~L~Aea~vv 97 (154)
T PLN02322 19 EFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQL-SINHLKSADLGDLVFAEATPV 97 (154)
T ss_pred EEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEE-EEEEeccCCCCCEEEEEEEEE
Confidence 4678889999999999999999999999999999999887766643333 46788887 899999999999999999999
Q ss_pred eeeccCCCCCeEEEEEEEEEeeCCCc---ceeEEEEEEEEEEEe
Q 013560 361 YTELENPDQPLINIEVVAHVTRPEFR---SSEVSNTFYFTFTVS 401 (441)
Q Consensus 361 ~tg~~~~~~~~~~VeV~~~v~~~~~~---~~~~~n~~~fTfv~~ 401 (441)
+.|++ ...+++.+ ++...+ +.++++++..|+.+.
T Consensus 98 ~~Gr~-----~~~~ev~V--~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 98 STGKT-----IQVWEVKL--WKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred ecCCC-----EEEEEEEE--EECCCCcccCCeEEEEEEEEEEEc
Confidence 99985 34444444 453222 258999999999765
No 12
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.45 E-value=2e-12 Score=110.73 Aligned_cols=106 Identities=21% Similarity=0.179 Sum_probs=86.7
Q ss_pred CceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEee
Q 013560 282 NSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLY 361 (441)
Q Consensus 282 ~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~ 361 (441)
..+.+++++....+.+.|+|+|.+|.+|||.++.++|.++++++... +..++|+.+ +++|++|++.||.|.++|+|..
T Consensus 7 ~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~-~~~~~t~~~-~i~f~rp~~~G~~l~~~a~v~~ 84 (114)
T TIGR02286 7 DILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSY-GDAAVAAQC-TIDFLRPGRAGERLEAEAVEVS 84 (114)
T ss_pred EEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCC-CCceEEEEE-EEEEecCCCCCCEEEEEEEEEE
Confidence 35667899999999999999999999999999999999988776443 334567776 8999999999999999999999
Q ss_pred eeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEE
Q 013560 362 TELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFT 399 (441)
Q Consensus 362 tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv 399 (441)
.|++ . ..+.+++++. ..++++++..||.
T Consensus 85 ~g~~-----~--~~~~~~i~~~---~~~~va~~~~t~~ 112 (114)
T TIGR02286 85 RGGR-----T--GTYDVEVVNQ---EGELVALFRGTSR 112 (114)
T ss_pred eCCc-----E--EEEEEEEEcC---CCCEEEEEEEEEE
Confidence 9984 2 3455555663 3568888888885
No 13
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.42 E-value=4.2e-12 Score=112.60 Aligned_cols=109 Identities=15% Similarity=0.107 Sum_probs=88.9
Q ss_pred cCCceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhc--CCCcEEEEEceEEEcCccCcCcEEEEEE
Q 013560 280 DRNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFA--GLMPCFLEVDHVDFLRPVDVGDFLRFKS 357 (441)
Q Consensus 280 ~~~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~--~~~~vt~~vd~i~F~~Pv~vGd~l~~~a 357 (441)
.-....+++++++..+.+.|+++|++|.+|||.++.++|.++++++.... +..++|+.+ +|+|++|++.| .|+++|
T Consensus 25 Gi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel-~infl~p~~~g-~l~a~a 102 (136)
T PRK10293 25 DIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEI-NANHVRSAREG-RVRGVC 102 (136)
T ss_pred CcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEE-EeEEecccCCc-eEEEEE
Confidence 34567788999999999999999999999999999999998887775433 335688887 89999999988 589999
Q ss_pred EEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEE
Q 013560 358 CVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTV 400 (441)
Q Consensus 358 ~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~ 400 (441)
+|++.|++ . ..+.++++|. +.++++.+.+||..
T Consensus 103 ~vv~~Gr~-----~--~~~~~~v~d~---~g~l~A~~~~t~~i 135 (136)
T PRK10293 103 KPLHLGSR-----H--QVWQIEIFDE---KGRLCCSSRLTTAI 135 (136)
T ss_pred EEEecCCC-----E--EEEEEEEEeC---CCCEEEEEEEEEEE
Confidence 99999985 3 3344555564 35789999999864
No 14
>PRK10254 thioesterase; Provisional
Probab=99.39 E-value=1.3e-11 Score=109.53 Aligned_cols=109 Identities=18% Similarity=0.068 Sum_probs=89.2
Q ss_pred CCceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhh--cCCCcEEEEEceEEEcCccCcCcEEEEEEE
Q 013560 281 RNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAF--AGLMPCFLEVDHVDFLRPVDVGDFLRFKSC 358 (441)
Q Consensus 281 ~~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~--~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~ 358 (441)
-....+++++++..+.+.|+++|++|.+|||.++.++|.+++++++.. .+..++|+.+ +|+|++|++.| .|+++|+
T Consensus 26 i~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel-~in~Lrp~~~g-~l~a~a~ 103 (137)
T PRK10254 26 IVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTEL-NATHHRPVSEG-KVRGVCQ 103 (137)
T ss_pred cEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEE-EeEEeccCcCC-eEEEEEE
Confidence 346788999999999999999999999999999999999988887632 3456788887 89999999987 6899999
Q ss_pred EeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEe
Q 013560 359 VLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVS 401 (441)
Q Consensus 359 Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~ 401 (441)
|++.|++ .+. +.+++++. +.++++.+.+|+..+
T Consensus 104 vi~~Gr~-----~~v--~~~~v~d~---~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 104 PLHLGRQ-----NQS--WEIVVFDE---QGRRCCTCRLGTAVL 136 (137)
T ss_pred EEecCcC-----EEE--EEEEEEcC---CCCEEEEEEEEEEEe
Confidence 9999985 333 44444563 467888998887653
No 15
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.38 E-value=4.7e-12 Score=112.39 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=99.1
Q ss_pred ccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCC--CCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEE
Q 013560 94 FSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDD--SMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVI 171 (441)
Q Consensus 94 ~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~--~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~ 171 (441)
|.....+++.++|..|+|+.++++.|++.+..- .++..+... .....+.++++.. +|+|++|++.||.|.++.++.
T Consensus 6 ~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~-~l~~~g~~~~~~~~~~~~~~v~~~-~i~y~~p~~~~d~l~v~~~v~ 83 (137)
T COG0824 6 FSTPIRVRYEDTDAMGHVNNANYLVFFEEARTE-FLRALGFDYADLEEGGIAFVVVEA-EIDYLRPARLGDVLTVRTRVE 83 (137)
T ss_pred eEEEEEEEhhhcCcccEEecchHHHHHHHHHHH-HHHHcCCCHHHHhhCCcEEEEEEE-EeEECCCccCCCEEEEEEEEE
Confidence 344567899999999999999999999888653 444433321 1112356888888 899999999999999999999
Q ss_pred EEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeecccc
Q 013560 172 WVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRL 222 (441)
Q Consensus 172 ~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~l 222 (441)
..|++|+.+..+++..+ .++++|..++|++|..++||.++|+-
T Consensus 84 ~~~~~s~~~~~~i~~~~--------~l~a~~~~~~V~v~~~~~kp~~~P~~ 126 (137)
T COG0824 84 ELGGKSLTLGYEIVNED--------ELLATGETTLVCVDLKTGKPVPLPPE 126 (137)
T ss_pred eecCeEEEEEEEEEeCC--------EEEEEEEEEEEEEECCCCCcccCCHH
Confidence 99999999999998764 79999999999999999999999973
No 16
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.37 E-value=1.1e-11 Score=107.15 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=94.4
Q ss_pred CcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCC--C-CCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEE
Q 013560 97 DDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDD--S-MTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWV 173 (441)
Q Consensus 97 d~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~--~-~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~v 173 (441)
...+|+.++|+.|++++++|+.|++++..... +..+.+. . .......+.+.. +++|++|++.||.|.+.++|...
T Consensus 4 ~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~-~~~g~~~~~~~~~~~~~~vv~~~-~i~y~~~~~~gd~v~v~~~v~~~ 81 (126)
T TIGR02799 4 PIRVYYEDTDAGGVVYHANYLKFMERARTEWL-RALGFEQSALLEETGLVFVVRSM-ELDYLKPARLDDLLTVTTRVVEL 81 (126)
T ss_pred eEEEEEeccCCCceEEechHHHHHHHHHHHHH-HHcCCCHHHHhhcCCcEEEEEEE-EEEEcCcccCCCEEEEEEEEEec
Confidence 45689999999999999999999998865433 3333221 1 122335666676 89999999999999999999999
Q ss_pred cccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeecccc
Q 013560 174 GRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRL 222 (441)
Q Consensus 174 GrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~l 222 (441)
|++|+.+..+++. + ..+++.|.+++|++|..++||.++|+-
T Consensus 82 ~~~~~~~~~~i~~-~-------g~~~a~~~~~~v~vd~~~~~~~~~p~~ 122 (126)
T TIGR02799 82 KGASLVFAQEVRR-G-------DTLLCEATVEVACVDASDMRPRRLPAE 122 (126)
T ss_pred CceEEEEEEEEEe-C-------CEEEEEEEEEEEEEECCCCcCcCCCHH
Confidence 9999999999994 2 368999999999999989999999873
No 17
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.35 E-value=1.4e-11 Score=107.72 Aligned_cols=118 Identities=9% Similarity=0.093 Sum_probs=96.1
Q ss_pred cCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCC--CCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEE
Q 013560 95 STDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDD--SMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIW 172 (441)
Q Consensus 95 ~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~--~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~ 172 (441)
.....+|+.++|+.|+|+.+.|+.|+++++.... +..+.+. ........+.+.. +++|++|+..||.|.++..+..
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~-~~~g~~~~~~~~~~~~~~v~~~-~i~y~~~~~~~d~i~v~t~v~~ 81 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEML-RHHHFSQQALLAERVAFVVRKM-TVEYYAPARLDDMLEVQSEITS 81 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHH-HHcCCCHHHHHhCCCEEEEEEE-EEEEcCcccCCCEEEEEEEEEe
Confidence 3456789999999999999999999999876433 3333211 1122346677777 7999999999999999999999
Q ss_pred EcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeeccc
Q 013560 173 VGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNR 221 (441)
Q Consensus 173 vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~ 221 (441)
.|++|+.+..+++..+ ..+++.|.+++|.+|.+++||.++|+
T Consensus 82 ~~~~s~~~~~~i~~~~-------g~~~a~~~~~~v~~d~~~~r~~~iP~ 123 (130)
T PRK10800 82 MRGTSLTFTQRIVNAE-------GTLLNEAEVLIVCVDPLKMKPRALPK 123 (130)
T ss_pred eCcEEEEEEEEEEcCC-------CeEEEEEEEEEEEEECCCCcCcCCCH
Confidence 9999999999988643 47899999999999998899999987
No 18
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.35 E-value=2e-11 Score=108.60 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=91.5
Q ss_pred CCceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcC--CCcEEEEEceEEEcCccCcCcEEEEEEE
Q 013560 281 RNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAG--LMPCFLEVDHVDFLRPVDVGDFLRFKSC 358 (441)
Q Consensus 281 ~~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~--~~~vt~~vd~i~F~~Pv~vGd~l~~~a~ 358 (441)
...+.+.+.+++..+.+.|++.|.+|++|||++|++||.++++++..... ...+|+.+ +|+|++|++.|+ |.++|+
T Consensus 26 ~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l-~i~flr~~~~g~-v~a~a~ 103 (141)
T COG2050 26 IEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLEL-NINFLRPVKEGD-VTAEAR 103 (141)
T ss_pred cEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEE-EehhccCCCCCe-EEEEEE
Confidence 35778889999999999999999999999999999999999999876544 34467887 899999999999 999999
Q ss_pred EeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEec
Q 013560 359 VLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSK 402 (441)
Q Consensus 359 Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d 402 (441)
|++.|++ +.+ +.+++.+. ...++++.+.+||...+
T Consensus 104 v~~~G~~------~~v-~~i~v~~~--~~~~lva~~~~t~~v~~ 138 (141)
T COG2050 104 VLHLGRR------VAV-VEIEVKND--EGGRLVAKGTGTYAVLR 138 (141)
T ss_pred EEeeCCE------EEE-EEEEEEEC--CCCeEEEEEEEEEEEec
Confidence 9999984 222 45555542 23479999999998764
No 19
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.34 E-value=2.4e-11 Score=104.45 Aligned_cols=106 Identities=18% Similarity=0.113 Sum_probs=85.7
Q ss_pred CceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhh--cCCCcEEEEEceEEEcCccCcCcEEEEEEEE
Q 013560 282 NSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAF--AGLMPCFLEVDHVDFLRPVDVGDFLRFKSCV 359 (441)
Q Consensus 282 ~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~--~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~V 359 (441)
..+..++++++..+.+.|+++|..|++|||.|+.++|.++++++... .+..++|+.+ +|+|++|++.| .|+++|+|
T Consensus 9 ~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l-~i~f~~p~~~g-~l~a~a~v 86 (117)
T TIGR00369 9 EIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLEL-NANHLRPAREG-KVRAIAQV 86 (117)
T ss_pred EEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEE-EeeeccccCCC-EEEEEEEE
Confidence 45667899999999999999999999999999999998887765432 3345678886 89999999999 89999999
Q ss_pred eeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEE
Q 013560 360 LYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFT 399 (441)
Q Consensus 360 v~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv 399 (441)
++.|++ . ..+.+++++. +.++++.+..||.
T Consensus 87 ~~~gr~-----~--~~~~~~i~~~---~g~~va~~~~t~~ 116 (117)
T TIGR00369 87 VHLGRQ-----T--GVAEIEIVDE---QGRLCALSRGTTA 116 (117)
T ss_pred EecCce-----E--EEEEEEEECC---CCCEEEEEEEEEc
Confidence 999985 3 3344444564 3568888888874
No 20
>PRK11688 hypothetical protein; Provisional
Probab=99.31 E-value=5.9e-11 Score=107.32 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=86.4
Q ss_pred CCceeecCCeEEEEEEeCCCCCC--CCCCCcHHHHHHHHHHHHHHHHHhhcC---------------CCcEEEEEceEEE
Q 013560 281 RNSILLRDTRLENALICQPQQRN--IHGRIFGGFLMLRAFELAFSTAYAFAG---------------LMPCFLEVDHVDF 343 (441)
Q Consensus 281 ~~~v~~~dt~~~~~~~v~P~~~N--~~G~vfGG~lm~~ade~A~~~A~~~~~---------------~~~vt~~vd~i~F 343 (441)
...+.+.+..+...+.+.|+++| .+|.+|||.|+.++|.+++.+++.... ..++|+.+ +++|
T Consensus 29 ~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l-~i~f 107 (154)
T PRK11688 29 LELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDL-RVDY 107 (154)
T ss_pred cEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEE-EEEe
Confidence 34566788999999999999996 689999999999999999998865321 13578888 8999
Q ss_pred cCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEE
Q 013560 344 LRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTV 400 (441)
Q Consensus 344 ~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~ 400 (441)
++|++ |+.|.++|+|++.|++ .+. +++++.+. ..++++++.-||..
T Consensus 108 l~p~~-g~~l~a~a~v~~~g~r-----~~~--~~~~i~~~---~g~lvA~a~~t~~v 153 (154)
T PRK11688 108 LRPGR-GERFTATSSVLRAGNK-----VAV--ARMELHNE---QGVHIASGTATYLV 153 (154)
T ss_pred eccCC-CCeEEEEEEEEEccCC-----EEE--EEEEEECC---CCCEEEEEEEEEEe
Confidence 99996 9999999999999985 334 44445554 35788888888853
No 21
>PLN02322 acyl-CoA thioesterase
Probab=99.29 E-value=9.7e-11 Score=105.71 Aligned_cols=117 Identities=10% Similarity=0.029 Sum_probs=93.9
Q ss_pred CCcCCCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCC
Q 013560 79 LTKTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSI 158 (441)
Q Consensus 79 ~~r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi 158 (441)
..-...+.+..+.+|+ +++++|++|.+|||.++.++|.+++++++..... ..+||..+ +|+|++|+
T Consensus 19 ~l~ei~~G~~~~~m~v------~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~-------~~~vTiel-~infLrpa 84 (154)
T PLN02322 19 EFDELSPTRVTGRLPV------SPMCCQPFKVLHGGVSALIAESLASLGAHMASGF-------KRVAGIQL-SINHLKSA 84 (154)
T ss_pred EEEEEECCEEEEEEEC------CHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCC-------CceEEEEE-EEEEeccC
Confidence 3345677888888775 6688999999999999999999888665332211 14799998 89999999
Q ss_pred CCCCEEEEEEEEEEEcccEEEEEEEEEEccccccCC-CceEEEEEEEEEEEeeC
Q 013560 159 SVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDT-SDSVVLTANFIFVARDS 211 (441)
Q Consensus 159 ~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~-~~~~v~~a~ft~Va~D~ 211 (441)
+.|+.|+.+|+|.+.|++...++++|+.... ..+ ..++++.|.+|+..+.+
T Consensus 85 ~~G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~--~~~~~~~lva~a~~T~~~~~~ 136 (154)
T PLN02322 85 DLGDLVFAEATPVSTGKTIQVWEVKLWKTTD--KDKANKILISSSRVTLICNLP 136 (154)
T ss_pred CCCCEEEEEEEEEecCCCEEEEEEEEEECCC--CcccCCeEEEEEEEEEEEccC
Confidence 9999999999999999999999999998532 111 26899999999976543
No 22
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.27 E-value=1.5e-10 Score=102.63 Aligned_cols=109 Identities=7% Similarity=0.081 Sum_probs=91.2
Q ss_pred CCcCCCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCC
Q 013560 79 LTKTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSI 158 (441)
Q Consensus 79 ~~r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi 158 (441)
..-...+.+.++.+|+ +++++|++|.+|||.++.++|.+++++++.+...+ ..+||..+ +++|++|+
T Consensus 27 ~i~~~~~g~~~~~~~v------~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~------~~~vTiel-~infl~p~ 93 (136)
T PRK10293 27 RFEHIGDDTLEATMPV------DSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGE------QKVVGLEI-NANHVRSA 93 (136)
T ss_pred EEEEEeCCEEEEEEEc------CHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCC------ceEEEEEE-EeEEeccc
Confidence 3345577888888875 56889999999999999999999887765554321 15899999 89999999
Q ss_pred CCCCEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEE
Q 013560 159 SVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVA 208 (441)
Q Consensus 159 ~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va 208 (441)
+.| .|+.+|+|.+.|++.+.+.++++.++ .++++.+.++|..
T Consensus 94 ~~g-~l~a~a~vv~~Gr~~~~~~~~v~d~~-------g~l~A~~~~t~~i 135 (136)
T PRK10293 94 REG-RVRGVCKPLHLGSRHQVWQIEIFDEK-------GRLCCSSRLTTAI 135 (136)
T ss_pred CCc-eEEEEEEEEecCCCEEEEEEEEEeCC-------CCEEEEEEEEEEE
Confidence 988 69999999999999999999999765 5899999998864
No 23
>PRK10254 thioesterase; Provisional
Probab=99.27 E-value=1.6e-10 Score=102.56 Aligned_cols=110 Identities=10% Similarity=0.103 Sum_probs=92.6
Q ss_pred CCCcCCCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccC
Q 013560 78 LLTKTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKS 157 (441)
Q Consensus 78 l~~r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~P 157 (441)
+......+.+.++.+|+ ++++.|++|.+|||.++.++|.+++++++.+...+ ..+||..+ +++|++|
T Consensus 26 i~i~ei~~g~~~~~l~v------~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g------~~~vTiel-~in~Lrp 92 (137)
T PRK10254 26 IVYTRLGDDVLEAEMPV------DTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDG------QCVVGTEL-NATHHRP 92 (137)
T ss_pred cEEEEEeCCEEEEEEEc------CccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCC------CeEEEEEE-EeEEecc
Confidence 34566788999998886 55789999999999999999999988776544321 26899999 8999999
Q ss_pred CCCCCEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEE
Q 013560 158 ISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVA 208 (441)
Q Consensus 158 i~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va 208 (441)
+..| .|+.+|+|.+.||+.+.+.++++.++ .++++.+.++.-.
T Consensus 93 ~~~g-~l~a~a~vi~~Gr~~~v~~~~v~d~~-------g~l~a~~~~t~~i 135 (137)
T PRK10254 93 VSEG-KVRGVCQPLHLGRQNQSWEIVVFDEQ-------GRRCCTCRLGTAV 135 (137)
T ss_pred CcCC-eEEEEEEEEecCcCEEEEEEEEEcCC-------CCEEEEEEEEEEE
Confidence 9877 79999999999999999999999765 5888998888754
No 24
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.27 E-value=8e-11 Score=92.85 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=65.2
Q ss_pred CCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEc
Q 013560 108 WNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQS 187 (441)
Q Consensus 108 ~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~ 187 (441)
+|+||||.++.|+|.++..++..+... ...++++.+ +++|++|++.||.|++.+++.++|++|+.+.++++++
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~------~~~~~~~~~-~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~ 73 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGD------GRGVVTVEL-SIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSE 73 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSS------TEEEEEEEE-EEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEET
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccC------CcceEEEEE-EEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEEC
Confidence 599999999999999999888887764 125666666 8999999999999999999999999999999999998
Q ss_pred c
Q 013560 188 T 188 (441)
Q Consensus 188 ~ 188 (441)
+
T Consensus 74 ~ 74 (79)
T PF03061_consen 74 D 74 (79)
T ss_dssp T
T ss_pred C
Confidence 7
No 25
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.26 E-value=1.4e-10 Score=99.22 Aligned_cols=102 Identities=12% Similarity=0.025 Sum_probs=83.8
Q ss_pred CCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCC
Q 013560 83 SSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDI 162 (441)
Q Consensus 83 ~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd 162 (441)
+.+.+..+.++ +++++.|+.|.+|||.++.++|.++++.+... . + ..+|+.+ +++|++|++.|+
T Consensus 11 ~~~g~~~~~l~------~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~--~------~-~~~t~~~-~i~f~rp~~~G~ 74 (114)
T TIGR02286 11 LGPGFARVAMT------VRADMLNGHGTAHGGFLFSLADSAFAYACNSY--G------D-AAVAAQC-TIDFLRPGRAGE 74 (114)
T ss_pred ecCCEEEEEEE------CCHHHcCcCCCchHHHHHHHHHHHHHHHhcCC--C------C-ceEEEEE-EEEEecCCCCCC
Confidence 35666776665 56789999999999999999999988765332 1 1 3678888 899999999999
Q ss_pred EEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEE
Q 013560 163 DLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 163 ~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~V 207 (441)
.|.++++|.+.|++...+.++++..+ .++++.+..||-
T Consensus 75 ~l~~~a~v~~~g~~~~~~~~~i~~~~-------~~~va~~~~t~~ 112 (114)
T TIGR02286 75 RLEAEAVEVSRGGRTGTYDVEVVNQE-------GELVALFRGTSR 112 (114)
T ss_pred EEEEEEEEEEeCCcEEEEEEEEEcCC-------CCEEEEEEEEEE
Confidence 99999999999999999999998643 478888888773
No 26
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.25 E-value=1.4e-10 Score=98.46 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=88.9
Q ss_pred cccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCC--CCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcc
Q 013560 98 DILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDD--DSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGR 175 (441)
Q Consensus 98 ~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~--~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGr 175 (441)
..+++.++|+.|+++.+.|+.|+++++...... .+.+ .........+++.. +++|++|+..||.|.++.++..+|+
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~-~g~~~~~~~~~~~~~~v~~~-~i~y~~~~~~gd~v~v~~~~~~~~~ 79 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRS-LGFPQSVLRAEGVAFVVVNI-NIEYKKPARLDDVLEIRTQIEELNG 79 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHH-cCCCHHHHHhCCCEEEEEEE-EEEECCcccCCCEEEEEEEEEecCc
Confidence 357889999999999999999999987643322 2211 01112235566666 7999999999999999999999999
Q ss_pred cEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeecc
Q 013560 176 SSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVN 220 (441)
Q Consensus 176 SSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp 220 (441)
+|+.+..+++..+ ..+++.+..+.|.+|.+++||.|+|
T Consensus 80 ~s~~~~~~i~~~~-------~~~~~~~~~~~v~~d~~~~r~~~ip 117 (117)
T TIGR00051 80 FSFVFSQEIFNED-------EALLKAATVIVVCVDPKKQKPVAIP 117 (117)
T ss_pred EEEEEEEEEEeCC-------CcEEEeeEEEEEEEECCCCeEcCCC
Confidence 9999999998754 2455666666889999899999887
No 27
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.24 E-value=2.6e-10 Score=97.96 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=85.8
Q ss_pred CCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCC
Q 013560 83 SSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDI 162 (441)
Q Consensus 83 ~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd 162 (441)
..+.+.++.+|+ .+++.|+.|.+|||.++.++|.++++++....... ..++|+.+ +|+|++|++.|
T Consensus 13 ~~~g~~~~~~~v------~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~------~~~vt~~l-~i~f~~p~~~g- 78 (117)
T TIGR00369 13 LGDGFLEATMPV------DERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGG------QAVVGLEL-NANHLRPAREG- 78 (117)
T ss_pred ecCCEEEEEEEc------CHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCC------ceEEEEEE-EeeeccccCCC-
Confidence 456777777764 66899999999999999999999876554433221 15789988 89999999999
Q ss_pred EEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEE
Q 013560 163 DLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIF 206 (441)
Q Consensus 163 ~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~ 206 (441)
.|+++++|.+.|++.+.+.++++.++ .++++.|..+|
T Consensus 79 ~l~a~a~v~~~gr~~~~~~~~i~~~~-------g~~va~~~~t~ 115 (117)
T TIGR00369 79 KVRAIAQVVHLGRQTGVAEIEIVDEQ-------GRLCALSRGTT 115 (117)
T ss_pred EEEEEEEEEecCceEEEEEEEEECCC-------CCEEEEEEEEE
Confidence 99999999999999999999998764 47899998887
No 28
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.19 E-value=6.5e-10 Score=95.43 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=81.3
Q ss_pred cCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCC-CCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEE
Q 013560 100 LREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSD-DDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSI 178 (441)
Q Consensus 100 lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~-~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSm 178 (441)
||+.++| +|+++.++++.|++.+... .+...+. .........++++.. +++|++|+..||.+++..++...|++|+
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~-~~~~~g~~~~~~~~~~~~~v~~~-~i~y~~~~~~~d~~~v~~~~~~~~~~s~ 77 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREE-FLEELGLYDELQGQGIGFVVAES-EIDYLRPLRFGDRLEVETRVEEIGGKSF 77 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHH-HHHHHTSCHHHTTTTEEEEEEEE-EEEE-S--BTTSEEEEEEEEEEEESSEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHH-HHHhcchhhHHHhcCceEEEEEE-EEEEcccccCCCEEEEEEEEEEECCcEE
Confidence 5789999 9999999999999996543 2222221 111222336777887 8999999999999999999999999999
Q ss_pred EEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeeccc
Q 013560 179 EIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNR 221 (441)
Q Consensus 179 eV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~ 221 (441)
.+..+++... +++..++++|..++|.+|..+ ++.|+|+
T Consensus 78 ~~~~~i~~~~----~g~~~~~a~~~~~~v~~d~~~-r~~~~P~ 115 (121)
T PF13279_consen 78 RFEQEIFRPA----DGKGELAATGRTVMVFVDYKT-RSVPIPD 115 (121)
T ss_dssp EEEEEEEECS----TTEEEEEEEEEEEEEEEETTT-CE-B--H
T ss_pred EEEEEEEEcC----CCceEEEEEEEEEEEEEeCCC-CcCCCCH
Confidence 9999999832 234577999999999999855 6888886
No 29
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.17 E-value=6.9e-10 Score=98.76 Aligned_cols=113 Identities=13% Similarity=0.124 Sum_probs=94.5
Q ss_pred CCcCCCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCC
Q 013560 79 LTKTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSI 158 (441)
Q Consensus 79 ~~r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi 158 (441)
..-...+.+.++.+|+ .+++.|++|.+|||.++.++|.++++++....... ...||..+ +|+|++|+
T Consensus 27 ~~~~~~~g~~~~~l~~------~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~------~~~~ti~l-~i~flr~~ 93 (141)
T COG2050 27 EIEEIEEGEAEATLPV------DPELLNPGGILHGGVIAALADSAAGLAANSLLGVV------ALAVTLEL-NINFLRPV 93 (141)
T ss_pred EEEEEecceEEEEeec------CHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCcc------ceeEEEEE-EehhccCC
Confidence 3455677888888886 44778899999999999999999998887766542 14588888 89999999
Q ss_pred CCCCEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeC
Q 013560 159 SVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDS 211 (441)
Q Consensus 159 ~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~ 211 (441)
+.|+ |...|+|.+.|++-..+.+++++.+. .++++++.+||.-.+.
T Consensus 94 ~~g~-v~a~a~v~~~G~~~~v~~i~v~~~~~------~~lva~~~~t~~v~~~ 139 (141)
T COG2050 94 KEGD-VTAEARVLHLGRRVAVVEIEVKNDEG------GRLVAKGTGTYAVLRK 139 (141)
T ss_pred CCCe-EEEEEEEEeeCCEEEEEEEEEEECCC------CeEEEEEEEEEEEecC
Confidence 9999 99999999999999999999997542 5899999999987653
No 30
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.12 E-value=1.9e-09 Score=90.90 Aligned_cols=105 Identities=21% Similarity=0.219 Sum_probs=85.6
Q ss_pred ceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhc--CCCcEEEEEceEEEcCccCcCcEEEEEEEEe
Q 013560 283 SILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFA--GLMPCFLEVDHVDFLRPVDVGDFLRFKSCVL 360 (441)
Q Consensus 283 ~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~--~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv 360 (441)
....++..++..+.+.+.+.|..|.+|||.++.++|.+++.++.... +...++.++ +++|++|++. +.|.++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~-~i~f~~p~~~-~~v~~~~~v~ 83 (113)
T cd03443 6 VVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDL-NVNYLRPARG-GDLTARARVV 83 (113)
T ss_pred EEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEE-EEeEEcCCCC-CeEEEEEEEE
Confidence 34566889999999999999999999999999999999998876654 556788888 8999999999 8999999999
Q ss_pred eeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEE
Q 013560 361 YTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFT 399 (441)
Q Consensus 361 ~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv 399 (441)
..|++ ++.+ .+.+.+.+ .++++++..+|+
T Consensus 84 ~~g~~-----~~~~--~~~~~~~~---~~~~a~a~~~~~ 112 (113)
T cd03443 84 KLGRR-----LAVV--EVEVTDED---GKLVATARGTFA 112 (113)
T ss_pred ecCce-----EEEE--EEEEECCC---CCEEEEEEEEEe
Confidence 99885 4444 44444542 457778877775
No 31
>PRK11688 hypothetical protein; Provisional
Probab=99.07 E-value=2.8e-09 Score=96.34 Aligned_cols=114 Identities=10% Similarity=0.111 Sum_probs=88.9
Q ss_pred CCcCCCCCeeEEEEcccCCcccCccccC--CCCcccHhHHHHHHHHHHHHHHHHhcCCCCC--C-----CCCceEEEEEE
Q 013560 79 LTKTSSQSRTSILYNFSTDDILREQYRD--PWNEVRIGKLLEDLDALAGTISVKHCSDDDS--M-----TRPLLLVTASV 149 (441)
Q Consensus 79 ~~r~~~dS~~~~~~p~~sd~~lr~~~~N--~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~--~-----~~p~~~VTasv 149 (441)
......+.+.++.+|+ +++++| ++|.+|||.++.++|.+++++++........ . .....+||..+
T Consensus 30 ~~~~~~~g~~~~~l~~------~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l 103 (154)
T PRK11688 30 ELERLEPDFVELSFKM------QPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDL 103 (154)
T ss_pred EEEEEeCCEEEEEeeC------CHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEE
Confidence 3344556778877764 668885 5799999999999999999888764421100 0 01124789999
Q ss_pred eeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEE
Q 013560 150 DKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 150 D~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~V 207 (441)
+++|++|+. |+.|.++|+|.+.|++.+.+.++++.++ .+++++|..+|.
T Consensus 104 -~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~i~~~~-------g~lvA~a~~t~~ 152 (154)
T PRK11688 104 -RVDYLRPGR-GERFTATSSVLRAGNKVAVARMELHNEQ-------GVHIASGTATYL 152 (154)
T ss_pred -EEEeeccCC-CCeEEEEEEEEEccCCEEEEEEEEECCC-------CCEEEEEEEEEE
Confidence 899999996 9999999999999999999999998654 488999998885
No 32
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.07 E-value=4.5e-09 Score=88.58 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=84.2
Q ss_pred CCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCE
Q 013560 84 SQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDID 163 (441)
Q Consensus 84 ~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~ 163 (441)
.+.+..+.++ +.+.+.|+.|.+|||.++.++|.+++..+......+ ...+++++ +++|++|++. +.
T Consensus 10 ~~~~~~~~~~------~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~------~~~~~~~~-~i~f~~p~~~-~~ 75 (113)
T cd03443 10 GPGRVVLRLP------VRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPG------ALAVTVDL-NVNYLRPARG-GD 75 (113)
T ss_pred cCCeEEEEee------CcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCC------CceEEEEE-EEeEEcCCCC-Ce
Confidence 4455565554 456789999999999999999999987665554211 15788899 7999999999 99
Q ss_pred EEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEE
Q 013560 164 LKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 164 l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~V 207 (441)
|.+++++...|++++.+.+++++++ .+++++|..+|+
T Consensus 76 v~~~~~v~~~g~~~~~~~~~~~~~~-------~~~~a~a~~~~~ 112 (113)
T cd03443 76 LTARARVVKLGRRLAVVEVEVTDED-------GKLVATARGTFA 112 (113)
T ss_pred EEEEEEEEecCceEEEEEEEEECCC-------CCEEEEEEEEEe
Confidence 9999999999999999999999764 368889988876
No 33
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.03 E-value=3.8e-09 Score=87.07 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=84.0
Q ss_pred cccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCC-CCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEccc
Q 013560 98 DILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDS-MTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRS 176 (441)
Q Consensus 98 ~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~-~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrS 176 (441)
..+++.++|..|++++|.+++|+|+++...+......... .......++... +++|++|++.|+.|++.+++...+++
T Consensus 5 ~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~i~v~~~~~~~~~~ 83 (110)
T cd00586 5 IRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVEL-EIDYLRPLRLGDRLTVETRVLRLGRK 83 (110)
T ss_pred EEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEe-EeeEcCccCCCCEEEEEEEEEecCcE
Confidence 4567899999999999999999999988655554322110 011125666776 79999999999999999999999999
Q ss_pred EEEEEEEEEEccccccCCCceEEEEEEEEEEEee
Q 013560 177 SIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARD 210 (441)
Q Consensus 177 SmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D 210 (441)
++.+.++++.++ .++++.+..+++.+|
T Consensus 84 ~~~~~~~~~~~~-------g~~~a~~~~~~~~~d 110 (110)
T cd00586 84 SFTFEQEIFRED-------GELLATAETVLVCVD 110 (110)
T ss_pred EEEEEEEEECCC-------CeEEEEEEEEEEEeC
Confidence 999999998753 478999999998875
No 34
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.03 E-value=3.3e-09 Score=93.65 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=71.8
Q ss_pred CceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCC-CcEEEEEceEEEcCccCcCcEEEEEEEEe
Q 013560 282 NSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGL-MPCFLEVDHVDFLRPVDVGDFLRFKSCVL 360 (441)
Q Consensus 282 ~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~~-~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv 360 (441)
..+...++++++.+.|.|+++|..|++|||.++.++|.++..++..-.+. +.|.+.+ +|+|+.|+++||.|.++|.++
T Consensus 30 ~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdL-svsyL~~AklGe~l~i~a~~v 108 (148)
T KOG3328|consen 30 RIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDL-SVSYLSSAKLGEELEIEATVV 108 (148)
T ss_pred EEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccCCCCceEEEE-EhhhccccCCCCeEEEEEEEe
Confidence 35667788999999999999999999999999999999999876543343 4455665 899999999999999999999
Q ss_pred eeecc
Q 013560 361 YTELE 365 (441)
Q Consensus 361 ~tg~~ 365 (441)
.+|++
T Consensus 109 r~Gk~ 113 (148)
T KOG3328|consen 109 RVGKT 113 (148)
T ss_pred ecCce
Confidence 99984
No 35
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.02 E-value=3.4e-09 Score=83.43 Aligned_cols=70 Identities=27% Similarity=0.302 Sum_probs=56.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhcCC-CcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEE
Q 013560 305 HGRIFGGFLMLRAFELAFSTAYAFAGL-MPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAH 379 (441)
Q Consensus 305 ~G~vfGG~lm~~ade~A~~~A~~~~~~-~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~ 379 (441)
+|++|||.++.|+|++++.++..+... ....+.-.+++|++|++.||.|.+++++++.|++ ++.+++.++
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~-----~~~~~~~v~ 71 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRK-----SFTVEVEVY 71 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESS-----EEEEEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCE-----EEEEEEEEE
Confidence 699999999999999999998887664 3333333599999999999999999999999985 556665554
No 36
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=98.92 E-value=3.5e-08 Score=92.05 Aligned_cols=104 Identities=21% Similarity=0.141 Sum_probs=82.9
Q ss_pred CceeecCC-eEEEEEEeCCCCC-CCCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEE
Q 013560 282 NSILLRDT-RLENALICQPQQR-NIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCV 359 (441)
Q Consensus 282 ~~v~~~dt-~~~~~~~v~P~~~-N~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~V 359 (441)
..+.+.++ .......+..++. |.+|.+|||++|.++|-++..+ .++..+++.++++.|++||.+||.|.++++|
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~----~~~~~~~~~i~~irF~kPV~pGD~L~~ea~v 151 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV----IDAELALTGVANIRFKRPVKLGERVVAKAEV 151 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh----cCCcEEEEEeeeEEEccCCCCCCEEEEEEEE
Confidence 46677777 6888899999999 9999999999999998764332 2566688888999999999999999999999
Q ss_pred eeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEE
Q 013560 360 LYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTV 400 (441)
Q Consensus 360 v~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~ 400 (441)
+..+.+ ...+.+.+++ .+.++..+.|+|++
T Consensus 152 ~~~~~~-----~~~v~~~~~v------~g~~V~ege~~~~~ 181 (185)
T PRK04424 152 VRKKGN-----KYIVEVKSYV------GDELVFRGKFIMYR 181 (185)
T ss_pred EEccCC-----EEEEEEEEEE------CCEEEEEEEEEEEE
Confidence 976653 3345555442 24688999999987
No 37
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.91 E-value=9.9e-09 Score=109.48 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=93.8
Q ss_pred CcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCC-CCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcc
Q 013560 97 DDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDS-MTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGR 175 (441)
Q Consensus 97 d~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~-~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGr 175 (441)
...|++.++|.+|+|+.++|+.|++++..-.... .+.+.. ......++++.. +|+|++|++.||.|+++.+|...|+
T Consensus 349 ~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~-~G~~~~~~~~~~~~vvv~~-~i~y~rp~~~gD~v~I~t~v~~~~~ 426 (495)
T PRK07531 349 ETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRL-IGVDAAYVAAGHSYYTVET-HIRHLGEAKAGQALHVETQLLSGDE 426 (495)
T ss_pred eEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHH-cCCCHHHHhcCCcEEEEEE-EEEEcccCCCCCEEEEEEEEEecCC
Confidence 5678999999999999999999999887643333 222110 001224566777 8999999999999999999999999
Q ss_pred cEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeeccc
Q 013560 176 SSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNR 221 (441)
Q Consensus 176 SSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~ 221 (441)
+|+.+..+++..+ .+++++|..++|++|.+++||+++|+
T Consensus 427 ~s~~~~~~i~~~~-------g~l~A~g~~~~v~vD~~trr~~~iP~ 465 (495)
T PRK07531 427 KRLHLFHTLYDAG-------GELIATAEHMLLHVDLKAGKAVPAPA 465 (495)
T ss_pred cEEEEEEEEECCC-------CcEEEEEEEEEEEEECCCCccCCCCH
Confidence 9999999998633 46899999999999998899888876
No 38
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=98.87 E-value=5e-08 Score=86.69 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=75.1
Q ss_pred CceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHh-h----cCCCcEEEEEceEEEcCccCcCcEEEEE
Q 013560 282 NSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYA-F----AGLMPCFLEVDHVDFLRPVDVGDFLRFK 356 (441)
Q Consensus 282 ~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~-~----~~~~~vt~~vd~i~F~~Pv~vGd~l~~~ 356 (441)
....++++++...+.+.|. +|++|++|||.|+.++|.++|.++.. + .+..+|++.+ +|+|++|++- + +.++
T Consensus 15 ~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~-~i~yl~P~~~-~-~~a~ 90 (138)
T TIGR02447 15 AVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADS-HIRYLAPVTG-D-PVAN 90 (138)
T ss_pred EEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEe-eeEEcCCcCC-C-eEEE
Confidence 3567788999999999995 99999999999999998665554422 1 2346788886 8999999985 4 4455
Q ss_pred EEE-------------eeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEe
Q 013560 357 SCV-------------LYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVS 401 (441)
Q Consensus 357 a~V-------------v~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~ 401 (441)
+.+ ..-|+ ..+.+++++ .+. .++++++.-||++.
T Consensus 91 ~~~~~~~~~~~~~~~l~~~gr-----~~~~~~~~v--~~~----~~lvA~~~g~~~~~ 137 (138)
T TIGR02447 91 CEAPDLESWEAFLATLQRGGK-----ARVKLEAQI--SSD----GKLAATFSGEYVAL 137 (138)
T ss_pred EEcCCHHHHHHHHHHHHhCCc-----eEEEEEEEE--EEC----CEEEEEEEEEEEEe
Confidence 555 22233 344444444 442 37899999999874
No 39
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=98.70 E-value=4.6e-07 Score=74.50 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=77.1
Q ss_pred EEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhc---------CCCcEEEEEceEEEcCccCcCcEEEEEEEEeeee
Q 013560 293 NALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFA---------GLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTE 363 (441)
Q Consensus 293 ~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~---------~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg 363 (441)
..+.+.|.|+|..|.+++|.+++++++++...+.... +...++... ++.|++|++.||.|.+++++...+
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~i~v~~~~~~~~ 81 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVEL-EIDYLRPLRLGDRLTVETRVLRLG 81 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEe-EeeEcCccCCCCEEEEEEEEEecC
Confidence 4578999999999999999999999999987765532 233455555 899999999999999999999988
Q ss_pred ccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEec
Q 013560 364 LENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSK 402 (441)
Q Consensus 364 ~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d 402 (441)
++ ++.+.+.+ .+. ++++++.+..+++..|
T Consensus 82 ~~-----~~~~~~~~--~~~---~g~~~a~~~~~~~~~d 110 (110)
T cd00586 82 RK-----SFTFEQEI--FRE---DGELLATAETVLVCVD 110 (110)
T ss_pred cE-----EEEEEEEE--ECC---CCeEEEEEEEEEEEeC
Confidence 74 44444444 443 3567888888887654
No 40
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.54 E-value=2.1e-06 Score=66.41 Aligned_cols=94 Identities=28% Similarity=0.302 Sum_probs=76.3
Q ss_pred ccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEE
Q 013560 99 ILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSI 178 (441)
Q Consensus 99 ~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSm 178 (441)
.+++.+.|..|+++||.++.++|.++...+...... ....+++.++ ++|.+|+..|+.|.+.+++...+++++
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~g~~v~~~~~~~~~~~~~~ 78 (100)
T cd03440 6 TVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGR------GLGAVTLSLD-VRFLRPVRPGDTLTVEAEVVRVGRSSV 78 (100)
T ss_pred EeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccC------CCeEEEEEEE-eEEecCCCCCCEEEEEEEEEeccccEE
Confidence 456788899999999999999999987655443310 1146777884 999999999999999999999999999
Q ss_pred EEEEEEEEccccccCCCceEEEEEEEEE
Q 013560 179 EIQLEVIQSTKEVSDTSDSVVLTANFIF 206 (441)
Q Consensus 179 eV~v~v~~~~~~~~~~~~~~v~~a~ft~ 206 (441)
.+.+.++..+ ..+++.+.+++
T Consensus 79 ~~~~~~~~~~-------~~~~~~~~~~~ 99 (100)
T cd03440 79 TVEVEVRNED-------GKLVATATATF 99 (100)
T ss_pred EEEEEEECCC-------CCEEEEEEEEe
Confidence 9999998763 36777777665
No 41
>PLN02370 acyl-ACP thioesterase
Probab=98.53 E-value=8e-06 Score=84.90 Aligned_cols=219 Identities=11% Similarity=0.050 Sum_probs=148.7
Q ss_pred ccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCC-------CCCCCCCceEEEEEEeeEEEccCCCCCCEEEE
Q 013560 94 FSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSD-------DDSMTRPLLLVTASVDKIALKKSISVDIDLKI 166 (441)
Q Consensus 94 ~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~-------~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i 166 (441)
|..+..+|.-+++..|.+....||.+|-++|..-+....-. +......+..|.+.. +|+|.+|...||.|++
T Consensus 140 y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~-~I~~~R~P~~gD~V~V 218 (419)
T PLN02370 140 FRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRM-QVLVDRYPTWGDVVQV 218 (419)
T ss_pred EEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEE-EEEeCcCCCCCCEEEE
Confidence 34467889999999999999999999999876543222110 011123445777777 7999999999999999
Q ss_pred EEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 013560 167 VGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRLSPQTEREKSLFEEAEARSKLRKRK 246 (441)
Q Consensus 167 ~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~l~p~t~~E~~l~~~a~~r~~~R~~~ 246 (441)
..++...|+.++....+++..+. +++++.|..++|.+|.+++||.++|+.+ +..++...
T Consensus 219 ~Twv~~~~k~~~~Rdf~I~D~~~------Ge~la~A~SvWV~mD~~TRRpvRIP~Ev------r~~i~~y~--------- 277 (419)
T PLN02370 219 DTWVSASGKNGMRRDWLVRDCKT------GETLTRASSVWVMMNKLTRRLSKIPEEV------RGEIEPYF--------- 277 (419)
T ss_pred EEEEeeCCCCEEEEEEEEEECCC------CeEEEEEEEEEEEEECCCCcccCCCHHH------HHhhhhcc---------
Confidence 99999999999999999887531 5899999999999999999999988511 11111000
Q ss_pred hcCCCCCCCchhHHHHHHHHHhcccccCCCCcccCCceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 013560 247 TGGDRRELDNGEVNRLEALLAEGRVICDMPALADRNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAY 326 (441)
Q Consensus 247 ~~~~~~~~~~~e~~~l~~l~~~~~~~~~~p~~~~~~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~ 326 (441)
....+..++ ..+.+...+ ..........+.|+..|+..+|.|-=...+.|+.|..-.--.
T Consensus 278 ---~~~~~~i~~---------------~~~kl~~l~--~~~~~~~~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l 337 (419)
T PLN02370 278 ---LNSDPVVNE---------------DSRKLPKLD--DKTADYIRKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIM 337 (419)
T ss_pred ---ccccccccc---------------ccccCCccc--cccccceeeeeeecHHHCcccCccccHHHHHHHHhhCchhhh
Confidence 000000000 000000000 000112344488999999999999999999999886653322
Q ss_pred hhcCCCcEEEEEceEEEcCccCcCcEEEEEEEE
Q 013560 327 AFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCV 359 (441)
Q Consensus 327 ~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~V 359 (441)
. .....++ +|.|.+-+.-||.|.....+
T Consensus 338 ~----~~~l~~i-~I~Y~kE~~~gd~V~s~~~~ 365 (419)
T PLN02370 338 E----SHELAAI-TLEYRRECGRDSVLQSLTAV 365 (419)
T ss_pred h----cceEEEE-EEEEcccCCCCCEEEEEEee
Confidence 1 2245666 68999999999999866554
No 42
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=98.52 E-value=1.7e-06 Score=76.88 Aligned_cols=108 Identities=9% Similarity=0.004 Sum_probs=77.2
Q ss_pred cCCCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCC
Q 013560 81 KTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISV 160 (441)
Q Consensus 81 r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~ 160 (441)
....+.+..+.+|+ .+. +|++|.+|||.++.++|.+++..++.+.... .. ...+||..+ +|+|++|+..
T Consensus 17 ~e~~~g~~~v~~pl------~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~-~~--~~~~vt~~~-~i~yl~P~~~ 85 (138)
T TIGR02447 17 SSYTGGELRLSAPL------AAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQEL-GI--DGDIVIADS-HIRYLAPVTG 85 (138)
T ss_pred EEeeCCEEEEEeEC------CCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHh-CC--CCcEEEEEe-eeEEcCCcCC
Confidence 34566788888875 344 7999999999999999855443232211110 00 125799888 8999999975
Q ss_pred CCEEEEEEEE-------------EEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEe
Q 013560 161 DIDLKIVGAV-------------IWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVAR 209 (441)
Q Consensus 161 gd~l~i~~~V-------------~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~ 209 (441)
++.+.+.+ ..-||+.+.+.++|+.+ +++++.+..+|+++
T Consensus 86 --~~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~~--------~~lvA~~~g~~~~~ 137 (138)
T TIGR02447 86 --DPVANCEAPDLESWEAFLATLQRGGKARVKLEAQISSD--------GKLAATFSGEYVAL 137 (138)
T ss_pred --CeEEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEEC--------CEEEEEEEEEEEEe
Confidence 36666555 57789999999999843 38999999999875
No 43
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=98.52 E-value=6.5e-07 Score=79.25 Aligned_cols=114 Identities=11% Similarity=0.134 Sum_probs=88.9
Q ss_pred cCCCcCCCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEcc
Q 013560 77 ELLTKTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKK 156 (441)
Q Consensus 77 ~l~~r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~ 156 (441)
+...-...+++.+..+ .|.++++|+.|++|||....+.|.++..++..-.+.. ..|.+-+ +|.|+.
T Consensus 28 ~i~~~~~~~Grv~ce~------kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~-------~gvsvdL-svsyL~ 93 (148)
T KOG3328|consen 28 NIRIVSAEPGRVSCEL------KVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFK-------PGVSVDL-SVSYLS 93 (148)
T ss_pred ceEEeeccCceEEEEE------EeCHHHcCccccccccchhhHHHHHhhHHHHhccCCC-------CceEEEE-Ehhhcc
Confidence 3344555677777644 5678999999999999999999999987543332221 4677777 899999
Q ss_pred CCCCCCEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEee
Q 013560 157 SISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARD 210 (441)
Q Consensus 157 Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D 210 (441)
|+.+|++|.++++|.++|++--.+.|+++...+ ..+.+.+.-|+--..
T Consensus 94 ~AklGe~l~i~a~~vr~Gk~la~t~v~l~~K~t------~kiia~grhtk~~~~ 141 (148)
T KOG3328|consen 94 SAKLGEELEIEATVVRVGKTLAFTDVELRRKST------GKIIAKGRHTKYFRP 141 (148)
T ss_pred ccCCCCeEEEEEEEeecCceEEEEEEEEEEcCC------CeEEEecceEEEeec
Confidence 999999999999999999999999999998763 466676666665443
No 44
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=98.45 E-value=3.6e-06 Score=78.49 Aligned_cols=86 Identities=14% Similarity=0.188 Sum_probs=71.0
Q ss_pred ccc-CCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEE
Q 013560 103 QYR-DPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQ 181 (441)
Q Consensus 103 ~~~-N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~ 181 (441)
.+. |.+|.+|||.++..+|.++..+ .+. ..+.+.++++.|++|+.+||.|.+++.|...+++...+.
T Consensus 95 ne~fn~~~i~hG~f~~aqa~~la~~~----~~~--------~~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~ 162 (185)
T PRK04424 95 EMVFSKTGIARGHHLFAQANSLAVAV----IDA--------ELALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVE 162 (185)
T ss_pred hhccCCCCeecHHHHHHHHHHHHHHh----cCC--------cEEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEE
Confidence 444 7899999999999998864321 121 345678889999999999999999999999998888888
Q ss_pred EEEEEccccccCCCceEEEEEEEEEEE
Q 013560 182 LEVIQSTKEVSDTSDSVVLTANFIFVA 208 (441)
Q Consensus 182 v~v~~~~~~~~~~~~~~v~~a~ft~Va 208 (441)
+++++++ .+++.|.+++|+
T Consensus 163 ~~~~v~g--------~~V~ege~~~~~ 181 (185)
T PRK04424 163 VKSYVGD--------ELVFRGKFIMYR 181 (185)
T ss_pred EEEEECC--------EEEEEEEEEEEE
Confidence 8888643 789999999998
No 45
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.44 E-value=6.8e-06 Score=63.50 Aligned_cols=95 Identities=31% Similarity=0.370 Sum_probs=73.0
Q ss_pred EEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhc--CCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCC
Q 013560 293 NALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFA--GLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQP 370 (441)
Q Consensus 293 ~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~--~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~ 370 (441)
....+.+.+.|..|.+|||.++.+++.++...+.... +...++..++ +.|.+|++.||.|.+++++...++.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~v~~~~~~~~~~~~----- 76 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLD-VRFLRPVRPGDTLTVEAEVVRVGRS----- 76 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEE-eEEecCCCCCCEEEEEEEEEecccc-----
Confidence 3567888899999999999999999999988876543 3456777775 9999999999999999999999874
Q ss_pred eEEEEEEEEEeeCCCcceeEEEEEEEEE
Q 013560 371 LINIEVVAHVTRPEFRSSEVSNTFYFTF 398 (441)
Q Consensus 371 ~~~VeV~~~v~~~~~~~~~~~n~~~fTf 398 (441)
++.+++.+ .+. ..++++.+.+++
T Consensus 77 ~~~~~~~~--~~~---~~~~~~~~~~~~ 99 (100)
T cd03440 77 SVTVEVEV--RNE---DGKLVATATATF 99 (100)
T ss_pred EEEEEEEE--ECC---CCCEEEEEEEEe
Confidence 44444444 443 245666666554
No 46
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=98.40 E-value=0.00013 Score=71.68 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=131.3
Q ss_pred CcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCC-C------CCCCCceEEEEEEeeEEEccCCCCCCEEEEEEE
Q 013560 97 DDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDD-D------SMTRPLLLVTASVDKIALKKSISVDIDLKIVGA 169 (441)
Q Consensus 97 d~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~-~------~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~ 169 (441)
...++..++|..|.+....|+.+|-++|+.-+.....+. . .....+..|.... .|++.++...|+.|+++.+
T Consensus 7 ~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~-~i~i~r~P~~~e~i~i~Tw 85 (261)
T PF01643_consen 7 EFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRY-QIEIHRYPRWGEKITIETW 85 (261)
T ss_dssp EEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEE-EEEESS--BTT-EEEEEEE
T ss_pred EEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEE-EEEEEecCCCCCEEEEEEE
Confidence 456788999999999999999999999886554332110 1 1122335666666 7999999999999999999
Q ss_pred EEEEcccEEEEEEEEEE-ccccccCCCceEEEEEEEEEEEeeCCCCceeeccccCCCCHH----HHHHHHHHHHHHHHHH
Q 013560 170 VIWVGRSSIEIQLEVIQ-STKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRLSPQTER----EKSLFEEAEARSKLRK 244 (441)
Q Consensus 170 V~~vGrSSmeV~v~v~~-~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~l~p~t~~----E~~l~~~a~~r~~~R~ 244 (441)
+...++-.+.=..+++. ++ +++++.|...+|.+|..++||..+|+-..+... +. +-+
T Consensus 86 ~~~~~~~~~~R~f~i~d~~~-------G~~l~~a~s~WvliD~~trr~~ri~~~~~~~~~~~~~~~-~~~---------- 147 (261)
T PF01643_consen 86 PSGFKRFFAYRDFEIYDAED-------GELLARATSIWVLIDLETRRPVRIPEEIIEEYGPFFPDE-LPE---------- 147 (261)
T ss_dssp EEEE-SSEEEEEEEEE--TT-------S-EEEEEEEEEEEEETTT-SEE---GGCTCCGGGGB-----T-----------
T ss_pred eccCCCcEEEEEEEEEECCC-------CcEEEEEEEEEEEEEhhhCCcccCCHHHHhhhhhhcccc-ccc----------
Confidence 99999998888888887 44 588999999999999999999999875444221 10 000
Q ss_pred HHhcCCCCCCCchhHHHHHHHHHhcccccCCCCcccCCceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 013560 245 RKTGGDRRELDNGEVNRLEALLAEGRVICDMPALADRNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFST 324 (441)
Q Consensus 245 ~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~p~~~~~~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~ 324 (441)
.... .++.+ + .....+......+.|+..|...+|.|.=-.-++|+.++.-..
T Consensus 148 --~~~~-----------------------~~~~~-~--~~~~~~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~ 199 (261)
T PF01643_consen 148 --EDIR-----------------------KLPKI-P--KNPPEEPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEE 199 (261)
T ss_dssp --EESS-----------------------S-------------TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HH
T ss_pred --cccc-----------------------ccccc-c--ccCChhhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcch
Confidence 0000 00000 0 001123445667889999999999999999999997776554
Q ss_pred HHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeee
Q 013560 325 AYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTE 363 (441)
Q Consensus 325 A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg 363 (441)
... .....++ +|.|.+.+..||.|.+...+...+
T Consensus 200 ~~~----~~~~~~i-~I~y~~E~~~gd~i~~~~~~~~~~ 233 (261)
T PF01643_consen 200 FLE----KYQIKSI-DINYKKEIRYGDTITSYTEVEKDE 233 (261)
T ss_dssp HHC----CEEEEEE-EEEE-S--BTT-EEEEEEEEEEEC
T ss_pred hhc----cCCcEEE-EEEEccccCCCCEEEEEEEEcccc
Confidence 322 2235566 789999999999999877766444
No 47
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=98.36 E-value=1.1e-05 Score=69.51 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=81.7
Q ss_pred EEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhc----------CCCcEEEEEceEEEcCccCcCcEEEEEEEEeee
Q 013560 293 NALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFA----------GLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYT 362 (441)
Q Consensus 293 ~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~----------~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~t 362 (441)
..+.|++.|++.+|.++.|.++.+++++...-..... +...+++.. +++|++|++.||.|.++++|...
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~-~i~y~~~~~~gd~v~v~~~v~~~ 81 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSM-ELDYLKPARLDDLLTVTTRVVEL 81 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEE-EEEEcCcccCCCEEEEEEEEEec
Confidence 3467999999999999999999999765543322111 112344444 89999999999999999999998
Q ss_pred eccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEecc-CCCCccCCccc
Q 013560 363 ELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKA-VTNGFRIRNVV 414 (441)
Q Consensus 363 g~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~-~~~~~~v~~v~ 414 (441)
|++ ++.+...+. + .+++++.+..+++++|. .++|.++|+-+
T Consensus 82 ~~~-----~~~~~~~i~--~----~g~~~a~~~~~~v~vd~~~~~~~~~p~~~ 123 (126)
T TIGR02799 82 KGA-----SLVFAQEVR--R----GDTLLCEATVEVACVDASDMRPRRLPAEL 123 (126)
T ss_pred Cce-----EEEEEEEEE--e----CCEEEEEEEEEEEEEECCCCcCcCCCHHH
Confidence 874 555555544 3 13578999999999987 57787777643
No 48
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.30 E-value=6.4e-06 Score=67.66 Aligned_cols=85 Identities=18% Similarity=0.028 Sum_probs=71.1
Q ss_pred CCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEc
Q 013560 108 WNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQS 187 (441)
Q Consensus 108 ~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~ 187 (441)
.|.+|||.++.++|.+++..+....+. ...+|.++ +++|++|...|+++.+++++.+.|++...+.+++++.
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~-------~~~~t~~~-~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 85 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGA-------SGFASLDH-HIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR 85 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCC-------CCeeeeEE-EEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECC
Confidence 689999999999999988766543321 14677777 8999999999999999999999999999999999987
Q ss_pred cccccCCCceEEEEEEEEEE
Q 013560 188 TKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 188 ~~~~~~~~~~~v~~a~ft~V 207 (441)
+ .++++++..+|.
T Consensus 86 ~-------G~lva~~~~~~~ 98 (99)
T cd00556 86 D-------GKLVASATQSFL 98 (99)
T ss_pred C-------CcEEEEEEEeEc
Confidence 5 478888877663
No 49
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=98.22 E-value=4.9e-05 Score=64.96 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=72.8
Q ss_pred eCCCCCCCCCCCcHHHHHHHHHHHHHHHHHh------hc--CCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCC
Q 013560 297 CQPQQRNIHGRIFGGFLMLRAFELAFSTAYA------FA--GLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPD 368 (441)
Q Consensus 297 v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~------~~--~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~ 368 (441)
|.+.|++ +|.++-+..+++++++-.--... +. +-.++++.. +++|++|++.||.+.++..+...|.+
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~-~i~y~~~~~~~d~~~v~~~~~~~~~~--- 75 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAES-EIDYLRPLRFGDRLEVETRVEEIGGK--- 75 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEE-EEEE-S--BTTSEEEEEEEEEEEESS---
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEE-EEEEcccccCCCEEEEEEEEEEECCc---
Confidence 5788999 99999999999998754333221 11 124566665 89999999999999999999998875
Q ss_pred CCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEeccCCCCccCCc
Q 013560 369 QPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKAVTNGFRIRN 412 (441)
Q Consensus 369 ~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~~~~~~~v~~ 412 (441)
++.++-.+ .++..+..++++++..++++.|...++.|+|+
T Consensus 76 --s~~~~~~i--~~~~~g~~~~~a~~~~~~v~~d~~~r~~~~P~ 115 (121)
T PF13279_consen 76 --SFRFEQEI--FRPADGKGELAATGRTVMVFVDYKTRSVPIPD 115 (121)
T ss_dssp --EEEEEEEE--EECSTTEEEEEEEEEEEEEEEETTTCE-B--H
T ss_pred --EEEEEEEE--EEcCCCceEEEEEEEEEEEEEeCCCCcCCCCH
Confidence 55555444 45555677789999999999988776666665
No 50
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=98.22 E-value=3.4e-05 Score=67.94 Aligned_cols=109 Identities=20% Similarity=0.155 Sum_probs=71.2
Q ss_pred CCceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCC--CcEEEEEceEEEcCccCcCcEEEEEEE
Q 013560 281 RNSILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGL--MPCFLEVDHVDFLRPVDVGDFLRFKSC 358 (441)
Q Consensus 281 ~~~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~~--~~vt~~vd~i~F~~Pv~vGd~l~~~a~ 358 (441)
.....+++++++..+...|..+|+.|++|||.|..++|-++++.+....+. .++..++ +|+|++|.+ |+ |++++.
T Consensus 21 ~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~-~i~f~kpa~-g~-v~a~~~ 97 (132)
T PF14539_consen 21 IRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSA-EIDFLKPAR-GD-VTATAE 97 (132)
T ss_dssp -EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEE-EEEE-S----S--EEEEEE
T ss_pred eEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEee-EEEEEeccC-Cc-EEEEEE
Confidence 346678899999999999999999999999999999999999887765554 3445565 899999987 54 456777
Q ss_pred EeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEE
Q 013560 359 VLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFT 399 (441)
Q Consensus 359 Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv 399 (441)
+.-... + ......+.+.+.|. ++++++.+.+|..
T Consensus 98 ~~~e~~---~-~~~~~~~~v~i~D~---~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 98 LTEEQI---G-ERGELTVPVEITDA---DGEVVAEATITWY 131 (132)
T ss_dssp -TCCHC---C-HEEEEEEEEEEEET---TC-EEEEEEEEEE
T ss_pred cCHHHh---C-CCcEEEEEEEEEEC---CCCEEEEEEEEEE
Confidence 655211 1 13456666666775 3567888888874
No 51
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.20 E-value=2.2e-05 Score=64.38 Aligned_cols=84 Identities=21% Similarity=0.182 Sum_probs=64.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhcC-CCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeC
Q 013560 305 HGRIFGGFLMLRAFELAFSTAYAFAG-LMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRP 383 (441)
Q Consensus 305 ~G~vfGG~lm~~ade~A~~~A~~~~~-~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~ 383 (441)
.|.+|||.++.++|.+++.++....+ ...++.++ +++|++|++.|+.+.+++++++.|++ ...+++.+ .+.
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~-~i~F~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~i--~~~ 85 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDH-HIYFHRPGDADEWLLYEVESLRDGRS-----RALRRGRA--YQR 85 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEE-EEEEcCCCCCCccEEEEEEecccCCC-----ceEEEEEE--ECC
Confidence 79999999999999999887765332 34566666 89999999999999999999999985 44445544 443
Q ss_pred CCcceeEEEEEEEEEE
Q 013560 384 EFRSSEVSNTFYFTFT 399 (441)
Q Consensus 384 ~~~~~~~~n~~~fTfv 399 (441)
++++++++.-+|.
T Consensus 86 ---~G~lva~~~~~~~ 98 (99)
T cd00556 86 ---DGKLVASATQSFL 98 (99)
T ss_pred ---CCcEEEEEEEeEc
Confidence 3567777776663
No 52
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=98.13 E-value=0.00013 Score=63.47 Aligned_cols=110 Identities=6% Similarity=0.030 Sum_probs=83.0
Q ss_pred EEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhc---------CCCcEEEEEceEEEcCccCcCcEEEEEEEEeee
Q 013560 292 ENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFA---------GLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYT 362 (441)
Q Consensus 292 ~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~---------~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~t 362 (441)
.....|.+.|++..|.++=+.++.|+++++.-....+. +-..+++.. +++|++|++.||.|.++..+...
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~-~i~y~~~~~~~d~i~v~t~v~~~ 82 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKM-TVEYYAPARLDDMLEVQSEITSM 82 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEE-EEEEcCcccCCCEEEEEEEEEee
Confidence 46678999999999999999999999888765433221 113345554 89999999999999999999999
Q ss_pred eccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEeccC-CCCccCCc
Q 013560 363 ELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKAV-TNGFRIRN 412 (441)
Q Consensus 363 g~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~~-~~~~~v~~ 412 (441)
|+. ++.+... +.+. ++++++++..++++.|.. ++|.++|+
T Consensus 83 ~~~-----s~~~~~~--i~~~---~g~~~a~~~~~~v~~d~~~~r~~~iP~ 123 (130)
T PRK10800 83 RGT-----SLTFTQR--IVNA---EGTLLNEAEVLIVCVDPLKMKPRALPK 123 (130)
T ss_pred CcE-----EEEEEEE--EEcC---CCeEEEEEEEEEEEEECCCCcCcCCCH
Confidence 874 4444444 3343 356889999999999865 56777776
No 53
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=98.06 E-value=0.00011 Score=62.07 Aligned_cols=106 Identities=6% Similarity=0.070 Sum_probs=73.4
Q ss_pred EEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhc---------CCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeecc
Q 013560 295 LICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFA---------GLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELE 365 (441)
Q Consensus 295 ~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~---------~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~ 365 (441)
+.|.+.|++.+|.++-+.++.++++++..-...+. +-..+++.. +++|++|++.||.|.++..+...|++
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~-~i~y~~~~~~gd~v~v~~~~~~~~~~ 80 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNI-NIEYKKPARLDDVLEIRTQIEELNGF 80 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEE-EEEECCcccCCCEEEEEEEEEecCcE
Confidence 46889999999999999999999988654432221 122355555 89999999999999999999998874
Q ss_pred CCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEecc-CCCCccCC
Q 013560 366 NPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKA-VTNGFRIR 411 (441)
Q Consensus 366 ~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~-~~~~~~v~ 411 (441)
++.+...+ .+.+ ...+.....+.++.|. .+++.++|
T Consensus 81 -----s~~~~~~i--~~~~---~~~~~~~~~~~v~~d~~~~r~~~ip 117 (117)
T TIGR00051 81 -----SFVFSQEI--FNED---EALLKAATVIVVCVDPKKQKPVAIP 117 (117)
T ss_pred -----EEEEEEEE--EeCC---CcEEEeeEEEEEEEECCCCeEcCCC
Confidence 55555444 3432 2334444444667774 35666654
No 54
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=98.06 E-value=0.00017 Score=63.98 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=87.1
Q ss_pred CeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcC----------CCcEEEEEceEEEcCccCcCcEEEEEEE
Q 013560 289 TRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAG----------LMPCFLEVDHVDFLRPVDVGDFLRFKSC 358 (441)
Q Consensus 289 t~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~----------~~~vt~~vd~i~F~~Pv~vGd~l~~~a~ 358 (441)
........|...|.+..|.++=+..+.+++++-.-.... .| ...+++.. +++|++|++.||.|.++.+
T Consensus 4 ~~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~-~g~~~~~~~~~~~~~~v~~~-~i~y~~p~~~~d~l~v~~~ 81 (137)
T COG0824 4 FPFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRA-LGFDYADLEEGGIAFVVVEA-EIDYLRPARLGDVLTVRTR 81 (137)
T ss_pred cceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHH-cCCCHHHHhhCCcEEEEEEE-EeEECCCccCCCEEEEEEE
Confidence 355677899999999999999999999997665433322 22 12566665 8999999999999999999
Q ss_pred EeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEecc-CCCCccCCccc
Q 013560 359 VLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKA-VTNGFRIRNVV 414 (441)
Q Consensus 359 Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~-~~~~~~v~~v~ 414 (441)
|...|+. ++...-. +.+.+ ++++++..++|++|. .++|.++|+-+
T Consensus 82 v~~~~~~-----s~~~~~~--i~~~~----~l~a~~~~~~V~v~~~~~kp~~~P~~~ 127 (137)
T COG0824 82 VEELGGK-----SLTLGYE--IVNED----ELLATGETTLVCVDLKTGKPVPLPPEL 127 (137)
T ss_pred EEeecCe-----EEEEEEE--EEeCC----EEEEEEEEEEEEEECCCCCcccCCHHH
Confidence 9999985 4444444 44542 799999999999984 57888888744
No 55
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=97.84 E-value=0.011 Score=57.87 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=63.5
Q ss_pred CcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEcc
Q 013560 109 NEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQST 188 (441)
Q Consensus 109 G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~ 188 (441)
+.+|||.++..+=. +|.+++..+ ..--|+ ++.|++|...+..|.++..+.+-|||.....++++|.+
T Consensus 21 ~~~fGG~~~Aqal~----Aa~~tv~~~--------~~~~S~-h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q~g 87 (271)
T TIGR00189 21 NRVFGGQVVGQALA----AASKTVPEE--------FIPHSL-HSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQHG 87 (271)
T ss_pred CceEccHHHHHHHH----HHHhcCCCC--------CCccee-EEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEECC
Confidence 58999999987633 344555421 112355 78999999999999999999999999999999999975
Q ss_pred ccccCCCceEEEEEEEEEEEee
Q 013560 189 KEVSDTSDSVVLTANFIFVARD 210 (441)
Q Consensus 189 ~~~~~~~~~~v~~a~ft~Va~D 210 (441)
+++.++.+.|....
T Consensus 88 --------~~~~~a~asf~~~~ 101 (271)
T TIGR00189 88 --------KTIFTLQASFQAEE 101 (271)
T ss_pred --------EEEEEEEEEcccCC
Confidence 68888888887543
No 56
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=97.81 E-value=0.0015 Score=58.14 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=78.3
Q ss_pred eeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEE
Q 013560 87 RTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKI 166 (441)
Q Consensus 87 ~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i 166 (441)
+.+...-++.|...-..|--....+.|=.+++++-.++++.+...... .+...+..+++++.|++|+.+||.|++
T Consensus 36 ~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~-----~~~~~~l~gi~~~kF~~pv~pGd~l~i 110 (147)
T PRK00006 36 SIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEEN-----KGKLVYFAGIDKARFKRPVVPGDQLIL 110 (147)
T ss_pred EEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCc-----CCcEEEEeeeeEEEEccccCCCCEEEE
Confidence 455555555554332222222344667788899999888755432111 122456778889999999999999999
Q ss_pred EEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEee
Q 013560 167 VGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARD 210 (441)
Q Consensus 167 ~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D 210 (441)
.+.|...++....+.+++++. ...++.|.++++-.|
T Consensus 111 ~~~i~~~~~~~v~~~~~~~~~--------g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 111 EVELLKQRRGIWKFKGVATVD--------GKLVAEAELMFAIRD 146 (147)
T ss_pred EEEEEEeeCCEEEEEEEEEEC--------CEEEEEEEEEEEEEc
Confidence 999999988888899988764 378899999998654
No 57
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=97.81 E-value=0.00049 Score=61.59 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=62.5
Q ss_pred ceeecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhc---C--CCcEEEEEceEEEcCccCcCcEEEEEE
Q 013560 283 SILLRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFA---G--LMPCFLEVDHVDFLRPVDVGDFLRFKS 357 (441)
Q Consensus 283 ~v~~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~---~--~~~vt~~vd~i~F~~Pv~vGd~l~~~a 357 (441)
....++..+.......| +.|.||++|||-|..+|--++|....... + +..|.+. .+|.|++||. || +++++
T Consensus 22 v~~~~~~~l~~~APL~p-N~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~~~IVi~~-~~i~Y~~Pv~-~d-~~A~~ 97 (144)
T PF09500_consen 22 VTSYTGQRLELSAPLAP-NINHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLNGDIVIAD-SNIRYLKPVT-GD-FTARC 97 (144)
T ss_dssp EEEEETTEEEEE--SGG-GB-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT---EEEEEE-EEEEE-S----S---EEEE
T ss_pred EEEEcCCEEEEeccCCC-CcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEe-CceEEcCCCC-CC-cEEEE
Confidence 55677888898888888 89999999999999999766666665432 2 4556665 5999999997 66 33344
Q ss_pred EEe----eee-ccC-CCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEe
Q 013560 358 CVL----YTE-LEN-PDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVS 401 (441)
Q Consensus 358 ~Vv----~tg-~~~-~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~ 401 (441)
..- +.+ ... ..+....+.+.+.+.+. .+.+.+|.-.||+.
T Consensus 98 ~~~~~~~~~~~~~~l~~~grari~l~~~i~~~----~~~~a~f~G~yv~l 143 (144)
T PF09500_consen 98 SLPEPEDWERFLQTLARGGRARITLEVEIYSG----GELAAEFTGRYVAL 143 (144)
T ss_dssp E-------S---GGGGCTS-EEEEEEEEEEET----TEEEEEEEEEEEEE
T ss_pred eccccchhHHHHHHHHcCCcEEEEEEEEEEEC----CEEEEEEEEEEEEE
Confidence 433 000 000 01123344444444553 35688999999875
No 58
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=97.77 E-value=0.00038 Score=61.30 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=70.5
Q ss_pred CCcCCCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCC
Q 013560 79 LTKTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSI 158 (441)
Q Consensus 79 ~~r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi 158 (441)
....+++.+..+.+|+ ++...|+.|++|||.|...+|.++++.+..+.+.. +.++..++ +|+|++|.
T Consensus 22 ~i~~~~~~~~~v~l~~------~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~------~~~~~k~~-~i~f~kpa 88 (132)
T PF14539_consen 22 RIEEVDPGRVVVRLPL------RPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDK------YRVWDKSA-EIDFLKPA 88 (132)
T ss_dssp EEEEEETTEEEEEE-S-------CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TT------EEEEEEEE-EEEE-S--
T ss_pred EEEEEcCCEEEEEEcC------CccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCc------EEEEEEee-EEEEEecc
Confidence 3455666789998886 55788999999999999999999998888877652 34555666 89999997
Q ss_pred CCCCEEEEEEEEEEE--c-ccEEEEEEEEEEccccccCCCceEEEEEEEEE
Q 013560 159 SVDIDLKIVGAVIWV--G-RSSIEIQLEVIQSTKEVSDTSDSVVLTANFIF 206 (441)
Q Consensus 159 ~~gd~l~i~~~V~~v--G-rSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~ 206 (441)
+ .+|.+.+.++.- + +...++.++++..+ ...++.+.+++
T Consensus 89 ~--g~v~a~~~~~~e~~~~~~~~~~~v~i~D~~-------G~~Va~~~~t~ 130 (132)
T PF14539_consen 89 R--GDVTATAELTEEQIGERGELTVPVEITDAD-------GEVVAEATITW 130 (132)
T ss_dssp ---S-EEEEEE-TCCHCCHEEEEEEEEEEEETT-------C-EEEEEEEEE
T ss_pred C--CcEEEEEEcCHHHhCCCcEEEEEEEEEECC-------CCEEEEEEEEE
Confidence 4 566777766552 2 55677777777654 46788888876
No 59
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=97.71 E-value=0.0021 Score=55.49 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=77.5
Q ss_pred eeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEE
Q 013560 87 RTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKI 166 (441)
Q Consensus 87 ~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i 166 (441)
+.+...-++.|...-..|--....+.|=.++|++..++++........ ..+...+...+.++.|.+|+.+|+.|++
T Consensus 21 ~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~----~~~~~~~l~~~~~~kf~~pv~pgd~l~i 96 (131)
T cd01288 21 SIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLED----FEGKLVYFAGIDKARFRKPVVPGDQLIL 96 (131)
T ss_pred EEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccc----cCCcEEEEeeecccEEccccCCCCEEEE
Confidence 444444444554432222222255777788899999988754332110 1112566778899999999999999999
Q ss_pred EEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEE
Q 013560 167 VGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVA 208 (441)
Q Consensus 167 ~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va 208 (441)
++++...+.....+.++++.++ +.+++|.++|+.
T Consensus 97 ~~~v~~~~~~~~~~~~~~~~~g--------~~v~~~~~~~~~ 130 (131)
T cd01288 97 EVELLKLRRGIGKFKGKAYVDG--------KLVAEAELMFAI 130 (131)
T ss_pred EEEEEEeeCCEEEEEEEEEECC--------EEEEEEEEEEEE
Confidence 9999999999989999887654 788999998874
No 60
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=97.62 E-value=0.052 Score=54.07 Aligned_cols=82 Identities=11% Similarity=0.049 Sum_probs=64.1
Q ss_pred CCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEc
Q 013560 108 WNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQS 187 (441)
Q Consensus 108 ~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~ 187 (441)
...+|||.++...=. +|.+.+..+ ...-|+ ++.|++|...+..|.++....+-|||.....|.++|.
T Consensus 31 ~r~~fGGqv~AQal~----AA~~tv~~~--------~~~hSl-h~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q~ 97 (286)
T PRK10526 31 LRQVFGGQVVGQALY----AAKETVPEE--------RLVHSF-HSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQN 97 (286)
T ss_pred CCceechHHHHHHHH----HHHhcCCCC--------CCceEE-EEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEEC
Confidence 467999999987633 344555421 222355 7899999999999999999999999999999999996
Q ss_pred cccccCCCceEEEEEEEEEEEee
Q 013560 188 TKEVSDTSDSVVLTANFIFVARD 210 (441)
Q Consensus 188 ~~~~~~~~~~~v~~a~ft~Va~D 210 (441)
+ +++.++.+.|-..+
T Consensus 98 g--------~~if~~~~sF~~~e 112 (286)
T PRK10526 98 G--------KPIFYMTASFQAPE 112 (286)
T ss_pred C--------EEEEEEEEEeccCC
Confidence 5 67888888887554
No 61
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.0014 Score=62.24 Aligned_cols=92 Identities=11% Similarity=0.066 Sum_probs=74.8
Q ss_pred ecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhh-cCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeec
Q 013560 286 LRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAF-AGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTEL 364 (441)
Q Consensus 286 ~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~-~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~ 364 (441)
-+..++.+...+.++-.+.-|.||||.|..++||+..+|+..- .....+|+.. +++|..|++...++.+.+.+..+.+
T Consensus 122 ~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanL-sisy~~pip~~~f~vi~t~~~~~~G 200 (237)
T KOG4781|consen 122 PSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANL-SISYKRPIPTNHFVVIRTQLDKVEG 200 (237)
T ss_pred cCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCCchhheeeec-ccccCCCcccceEEEEecchhhhcC
Confidence 3455778888999999999999999999999999999998753 3346799998 7999999999999999999988876
Q ss_pred cCCCCCeEEEEEEEEEeeC
Q 013560 365 ENPDQPLINIEVVAHVTRP 383 (441)
Q Consensus 365 ~~~~~~~~~VeV~~~v~~~ 383 (441)
+ .......+.+.+.
T Consensus 201 r-----k~~~~g~l~~~~~ 214 (237)
T KOG4781|consen 201 R-----KCKTFGELNVQSG 214 (237)
T ss_pred c-----ccceeeEEEEecC
Confidence 4 3445555555554
No 62
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.42 E-value=0.0029 Score=52.45 Aligned_cols=79 Identities=22% Similarity=0.182 Sum_probs=61.8
Q ss_pred CCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEE
Q 013560 107 PWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQ 186 (441)
Q Consensus 107 ~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~ 186 (441)
..+.+|||.++.....+| .+....+ ....++ ++.|++|...+..+.++..+.+-|||.....++++|
T Consensus 14 ~~~~~~GG~l~a~a~~Aa----~~~~~~~--------~~~~s~-~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q 80 (94)
T cd03445 14 QGRGVFGGQVLAQALVAA----ARTVPDD--------RVPHSL-HSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ 80 (94)
T ss_pred CCCceEHHHHHHHHHHHH----HhhCCCC--------CCeEEE-EEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE
Confidence 467899999999775554 3444321 222355 689999999999999999999999999999999998
Q ss_pred ccccccCCCceEEEEEEEEE
Q 013560 187 STKEVSDTSDSVVLTANFIF 206 (441)
Q Consensus 187 ~~~~~~~~~~~~v~~a~ft~ 206 (441)
++ +++..+..+|
T Consensus 81 ~g--------~~~~~a~~sf 92 (94)
T cd03445 81 NG--------KVIFTATASF 92 (94)
T ss_pred CC--------EEEEEEEEEE
Confidence 75 6777777766
No 63
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.38 E-value=0.0035 Score=67.22 Aligned_cols=116 Identities=10% Similarity=0.013 Sum_probs=87.0
Q ss_pred ecCCeEEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhc--------CCCcEEEEEceEEEcCccCcCcEEEEEE
Q 013560 286 LRDTRLENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFA--------GLMPCFLEVDHVDFLRPVDVGDFLRFKS 357 (441)
Q Consensus 286 ~~dt~~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~--------~~~~vt~~vd~i~F~~Pv~vGd~l~~~a 357 (441)
.+...+...+.|.|.+++.+|.++=+..+.++++...-....+. +...+++.. +|+|++|++.||.|+++.
T Consensus 341 ~~~~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~-~i~y~rp~~~gD~v~I~t 419 (495)
T PRK07531 341 LSQPLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVET-HIRHLGEAKAGQALHVET 419 (495)
T ss_pred CCCceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEE-EEEEcccCCCCCEEEEEE
Confidence 44566678999999999999999999999999877654433221 223456665 899999999999999999
Q ss_pred EEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEeccC-CCCccCCc
Q 013560 358 CVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKAV-TNGFRIRN 412 (441)
Q Consensus 358 ~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~~-~~~~~v~~ 412 (441)
+|...+++ ++.++..+ .+. ++++++++..+++++|.. +++.++|+
T Consensus 420 ~v~~~~~~-----s~~~~~~i--~~~---~g~l~A~g~~~~v~vD~~trr~~~iP~ 465 (495)
T PRK07531 420 QLLSGDEK-----RLHLFHTL--YDA---GGELIATAEHMLLHVDLKAGKAVPAPA 465 (495)
T ss_pred EEEecCCc-----EEEEEEEE--ECC---CCcEEEEEEEEEEEEECCCCccCCCCH
Confidence 99998874 55555444 342 346889999999999864 45555544
No 64
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=97.38 E-value=0.012 Score=52.26 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=74.6
Q ss_pred ceeec-CCeEEEEEEeCCCCCCCCCC------CcHHHHHHHHHHHHHHHHHhhc---CCCcEEEEEceEEEcCccCcCcE
Q 013560 283 SILLR-DTRLENALICQPQQRNIHGR------IFGGFLMLRAFELAFSTAYAFA---GLMPCFLEVDHVDFLRPVDVGDF 352 (441)
Q Consensus 283 ~v~~~-dt~~~~~~~v~P~~~N~~G~------vfGG~lm~~ade~A~~~A~~~~---~~~~vt~~vd~i~F~~Pv~vGd~ 352 (441)
...++ +..++....+.+++.-..|. +.|=.++.++..++++.+.... +...+..+++++.|++||++||.
T Consensus 28 i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~ 107 (147)
T PRK00006 28 VLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQ 107 (147)
T ss_pred EEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCE
Confidence 44454 36788888888876544443 5565666777777776554332 23346788899999999999999
Q ss_pred EEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEec
Q 013560 353 LRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSK 402 (441)
Q Consensus 353 l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d 402 (441)
|++++.|..... ..+.+++.+. . .++++..+.++|...|
T Consensus 108 l~i~~~i~~~~~-----~~v~~~~~~~--~----~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 108 LILEVELLKQRR-----GIWKFKGVAT--V----DGKLVAEAELMFAIRD 146 (147)
T ss_pred EEEEEEEEEeeC-----CEEEEEEEEE--E----CCEEEEEEEEEEEEEc
Confidence 999999997754 3445555553 2 2467888888887543
No 65
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.32 E-value=0.0037 Score=51.78 Aligned_cols=79 Identities=23% Similarity=0.182 Sum_probs=56.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeC
Q 013560 304 IHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRP 383 (441)
Q Consensus 304 ~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~ 383 (441)
..+.+|||+++.++..+|..+ ........++ +..|++|+..+.-+.++..+++.|++ ..+..|.+. ..
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~----~~~~~~~~s~-~~~Fl~p~~~~~pv~~~v~~lr~GRs-----~~~~~V~~~--Q~ 81 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAART----VPDDRVPHSL-HSYFLRPGDPDQPIEYEVERLRDGRS-----FATRRVRAV--QN 81 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhh----CCCCCCeEEE-EEEecCCCCCCCCEEEEEEEEECCCc-----EEEEEEEEE--EC
Confidence 578999999999886555433 3333445565 67999999988889999999999984 556666663 32
Q ss_pred CCcceeEEEEEEEEE
Q 013560 384 EFRSSEVSNTFYFTF 398 (441)
Q Consensus 384 ~~~~~~~~n~~~fTf 398 (441)
.+++.++..+|
T Consensus 82 ----g~~~~~a~~sf 92 (94)
T cd03445 82 ----GKVIFTATASF 92 (94)
T ss_pred ----CEEEEEEEEEE
Confidence 34566666666
No 66
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=97.25 E-value=0.017 Score=49.81 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=72.7
Q ss_pred eec-CCeEEEEEEeCCCCCCCC------CCCcHHHHHHHHHHHHHHHHHhh----cCCCcEEEEEceEEEcCccCcCcEE
Q 013560 285 LLR-DTRLENALICQPQQRNIH------GRIFGGFLMLRAFELAFSTAYAF----AGLMPCFLEVDHVDFLRPVDVGDFL 353 (441)
Q Consensus 285 ~~~-dt~~~~~~~v~P~~~N~~------G~vfGG~lm~~ade~A~~~A~~~----~~~~~vt~~vd~i~F~~Pv~vGd~l 353 (441)
.+. +..++....+.+++--.- ..+.|=.++.++..++++..... .+...+...+.++.|.+||.+||.|
T Consensus 15 ~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd~l 94 (131)
T cd01288 15 ELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQL 94 (131)
T ss_pred EEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCCEE
Confidence 344 456777777777753222 44667677788888887765432 2345667888999999999999999
Q ss_pred EEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEE
Q 013560 354 RFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTV 400 (441)
Q Consensus 354 ~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~ 400 (441)
+++++++..+.. ...+++.+++ ..++..++.++|+.
T Consensus 95 ~i~~~v~~~~~~-----~~~~~~~~~~------~g~~v~~~~~~~~~ 130 (131)
T cd01288 95 ILEVELLKLRRG-----IGKFKGKAYV------DGKLVAEAELMFAI 130 (131)
T ss_pred EEEEEEEEeeCC-----EEEEEEEEEE------CCEEEEEEEEEEEE
Confidence 999999987753 4444444432 13577788888763
No 67
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.21 E-value=0.00069 Score=68.04 Aligned_cols=144 Identities=17% Similarity=0.245 Sum_probs=97.7
Q ss_pred cCCcccccchhhHHHH-----HhhHhhhhcCC---CCCCCCCCCcCCCcCCCCCeeEEEEcccCCcccCccccCCCCccc
Q 013560 41 LWPGMYHSPVTNALWE-----ARSKIFERLLD---PPKDAPPQSELLTKTSSQSRTSILYNFSTDDILREQYRDPWNEVR 112 (441)
Q Consensus 41 ~~~~~~~~~~~~~lw~-----~r~~~~~~~~~---~~~~~~~~~~l~~r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~ 112 (441)
+|-|...-||+..=-+ .|...++.... .|-....-+|.-.+..+++..+...- ..+-|+.+|+.|++-
T Consensus 276 iwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpqvget~~d~I~~~l~e~~~~~~~t----~~V~P~M~n~~Gtis 351 (432)
T COG4109 276 IWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQVGETISDQIANNLSEKGDEYGVT----VEVEPQMINSLGTIS 351 (432)
T ss_pred HhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCCcccccHHHHHHhhhhhhccccceE----EEechhhccccccch
Confidence 5666666666654332 45555543322 11111222344556666554443221 357789999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEcccccc
Q 013560 113 IGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVS 192 (441)
Q Consensus 113 gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~ 192 (441)
.|.+-+++-+.+-..-.+..+. .++--++ .+.|++|+..++.|++..+|...||.+--+.++++.++
T Consensus 352 ~gv~~~ll~e~~qr~l~k~~~~--------niiIE~i-~iyflk~vqid~~l~I~prIl~~gR~~a~idvei~~~~---- 418 (432)
T COG4109 352 NGVFTELLTEVVQRVLRKKKKR--------NIIIENI-TIYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEIYHDG---- 418 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--------ceEEEee-eeeeecceecccEEEEeeeeeccccccceeEEEEeeCc----
Confidence 9999999988876544444333 4565666 78999999999999999999999999999999999876
Q ss_pred CCCceEEEEEEEE
Q 013560 193 DTSDSVVLTANFI 205 (441)
Q Consensus 193 ~~~~~~v~~a~ft 205 (441)
..++.|.++
T Consensus 419 ----~ivaKAiv~ 427 (432)
T COG4109 419 ----QIVAKAIVT 427 (432)
T ss_pred ----chhhhheee
Confidence 456666554
No 68
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.16 E-value=0.0073 Score=58.41 Aligned_cols=83 Identities=23% Similarity=0.161 Sum_probs=57.6
Q ss_pred CCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEc
Q 013560 108 WNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQS 187 (441)
Q Consensus 108 ~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~ 187 (441)
.+.+|||.++..+-.+ +..+...+ .....++ +++|++|+..| .++++.++.+.||+.-.+.++++|.
T Consensus 9 g~~~~GG~~a~~~~~A----~~~~~~~~-------~~~~~s~-~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q~ 75 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAA----ARTHAPPP-------GFDPHSL-HVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQD 75 (255)
T ss_dssp TTCE-HHHHHHHHHHH----HHHCHTTT-------SSEEEEE-EEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEET
T ss_pred CCcChhHHHHHHHHHH----HHHhccCC-------CCceEEE-EeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEEC
Confidence 5679999555444222 22222111 1344566 78999999999 9999999999999999999999997
Q ss_pred cccccCCCceEEEEEEEEEEEeeC
Q 013560 188 TKEVSDTSDSVVLTANFIFVARDS 211 (441)
Q Consensus 188 ~~~~~~~~~~~v~~a~ft~Va~D~ 211 (441)
+ ++++.|..+|...+.
T Consensus 76 ~--------~~~~~a~~~f~~~~~ 91 (255)
T PF13622_consen 76 G--------KVVATATASFGRPEP 91 (255)
T ss_dssp T--------EEEEEEEEEEE--TT
T ss_pred C--------cCEEEEEEEEccCcC
Confidence 5 688999999988764
No 69
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=96.90 E-value=0.025 Score=48.39 Aligned_cols=79 Identities=9% Similarity=0.056 Sum_probs=55.7
Q ss_pred cccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcc--cEEEEEEEEEEc
Q 013560 110 EVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGR--SSIEIQLEVIQS 187 (441)
Q Consensus 110 ~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGr--SSmeV~v~v~~~ 187 (441)
.++|..++.+++.+.+ ..... + ..+.... ++.|++|+.+||.|.+.++|+.... ..+.+.+++...
T Consensus 47 i~~g~~~~~~~~~~~~----~~~~g------~-~~~~~~~-~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~ 114 (128)
T cd03449 47 IAHGMLTASLISAVLG----TLLPG------P-GTIYLSQ-SLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQ 114 (128)
T ss_pred eecHHHHHHHHHHHHh----ccCCC------c-eEEEEEE-EEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeC
Confidence 5788888877755421 11111 1 3444554 8999999999999999999998765 577777777665
Q ss_pred cccccCCCceEEEEEEEEEE
Q 013560 188 TKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 188 ~~~~~~~~~~~v~~a~ft~V 207 (441)
+ ..+++.+.+++.
T Consensus 115 ~-------g~~v~~g~~~~~ 127 (128)
T cd03449 115 N-------GEVVIEGEAVVL 127 (128)
T ss_pred C-------CCEEEEEEEEEe
Confidence 4 467888888765
No 70
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=96.86 E-value=0.06 Score=47.35 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=72.2
Q ss_pred CeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEE
Q 013560 86 SRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLK 165 (441)
Q Consensus 86 S~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~ 165 (441)
.+.+...-++.|...-..|--....+=|=.++|++-.++++.+....... ...+......+++++.|.+|+++||.|+
T Consensus 28 ~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~kF~~~v~pGd~l~ 105 (140)
T TIGR01750 28 KRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGE--IGKGKLVYFAGIDKAKFRRPVVPGDQLI 105 (140)
T ss_pred CEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHhecccccc--CCCCcEEEEeecceeEECCccCCCCEEE
Confidence 34555454445443322221112334566788999888876543322210 1112245677889999999999999999
Q ss_pred EEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEE
Q 013560 166 IVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 166 i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~V 207 (441)
+.+.+......-..+.+++.++ .++++.|..+|+
T Consensus 106 i~~~i~~~~~~~~~~~~~~~~~--------g~~va~~~~~~~ 139 (140)
T TIGR01750 106 LHAEFLKKRRKIGKFKGEATVD--------GKVVAEAEITFA 139 (140)
T ss_pred EEEEEEEccCCEEEEEEEEEEC--------CEEEEEEEEEEE
Confidence 9999998877767777777654 378888888774
No 71
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=96.82 E-value=0.017 Score=55.89 Aligned_cols=82 Identities=24% Similarity=0.204 Sum_probs=52.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhc-CCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeC
Q 013560 305 HGRIFGGFLMLRAFELAFSTAYAFA-GLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRP 383 (441)
Q Consensus 305 ~G~vfGG~lm~~ade~A~~~A~~~~-~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~ 383 (441)
.+.+|||+++..+- .| +..+. +......++ +++|++|+..| -+.++.++++.|++ +-.++|.+. +.
T Consensus 9 g~~~~GG~~a~~~~-~A---~~~~~~~~~~~~~s~-~~~fl~p~~~~-~~~~~v~~~r~Gr~-----~~~~~v~~~--q~ 75 (255)
T PF13622_consen 9 GRVVHGGYLAQLLA-AA---ARTHAPPPGFDPHSL-HVYFLRPVPPG-PVEYRVEVLRDGRS-----FSTRQVELS--QD 75 (255)
T ss_dssp TTCE-HHHHHHHHH-HH---HHHCHTTTSSEEEEE-EEEESS--BSC-EEEEEEEEEEESSS-----EEEEEEEEE--ET
T ss_pred CCcChhHHHHHHHH-HH---HHHhccCCCCceEEE-EeEeccccccC-CEEEEEEEeeCCCc-----EEEEEEEEE--EC
Confidence 66799996665442 22 22232 334677777 78999999999 89999999999985 445555553 32
Q ss_pred CCcceeEEEEEEEEEEEecc
Q 013560 384 EFRSSEVSNTFYFTFTVSKA 403 (441)
Q Consensus 384 ~~~~~~~~n~~~fTfv~~d~ 403 (441)
++++.++..+|...+.
T Consensus 76 ----~~~~~~a~~~f~~~~~ 91 (255)
T PF13622_consen 76 ----GKVVATATASFGRPEP 91 (255)
T ss_dssp ----TEEEEEEEEEEE--TT
T ss_pred ----CcCEEEEEEEEccCcC
Confidence 3488888889987643
No 72
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=96.72 E-value=0.024 Score=48.43 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCC
Q 013560 306 GRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEF 385 (441)
Q Consensus 306 G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~ 385 (441)
-.+||++++.++..+. +..+.+...+... .++.|++||..||.|+++++|+..... +.. +.+.+.+.+.
T Consensus 46 ~i~~g~~~~~~~~~~~---~~~~~g~~~~~~~-~~~~f~~Pv~~gd~l~~~~~v~~~~~~---~~~--v~~~~~~~~~-- 114 (128)
T cd03449 46 RIAHGMLTASLISAVL---GTLLPGPGTIYLS-QSLRFLRPVFIGDTVTATVTVTEKRED---KKR--VTLETVCTNQ-- 114 (128)
T ss_pred ceecHHHHHHHHHHHH---hccCCCceEEEEE-EEEEECCCccCCCEEEEEEEEEEEecC---CCE--EEEEEEEEeC--
Confidence 4789999998876542 2223333344445 499999999999999999999977542 123 3444444453
Q ss_pred cceeEEEEEEEEE
Q 013560 386 RSSEVSNTFYFTF 398 (441)
Q Consensus 386 ~~~~~~n~~~fTf 398 (441)
..+++..+..+.
T Consensus 115 -~g~~v~~g~~~~ 126 (128)
T cd03449 115 -NGEVVIEGEAVV 126 (128)
T ss_pred -CCCEEEEEEEEE
Confidence 234566666554
No 73
>PLN02868 acyl-CoA thioesterase family protein
Probab=96.69 E-value=0.36 Score=50.52 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=62.4
Q ss_pred CCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEc
Q 013560 108 WNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQS 187 (441)
Q Consensus 108 ~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~ 187 (441)
.+.+|||.++..+ ..+|.+++... . .+. ++ ++.|+.|...+..+.++..+.+-|||.....|+++|.
T Consensus 157 ~~~~fGG~~~aqa----l~Aa~~~~~~~----~--~~~--s~-~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~Q~ 223 (413)
T PLN02868 157 FGKVFGGQLVGQA----LAAASKTVDPL----K--LVH--SL-HAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAIQK 223 (413)
T ss_pred cccccchHHHHHH----HHHHHccCCCC----C--Cce--Ee-eeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEEEC
Confidence 4789999999865 23344554321 0 233 44 6899999888888999999999999999999999997
Q ss_pred cccccCCCceEEEEEEEEEEEee
Q 013560 188 TKEVSDTSDSVVLTANFIFVARD 210 (441)
Q Consensus 188 ~~~~~~~~~~~v~~a~ft~Va~D 210 (441)
+ +++.++.++|...+
T Consensus 224 g--------~~~~~~~~sf~~~~ 238 (413)
T PLN02868 224 G--------KVIFTLFASFQKEE 238 (413)
T ss_pred C--------eeEEEEeeccccCC
Confidence 5 67788888887654
No 74
>PLN02864 enoyl-CoA hydratase
Probab=96.61 E-value=0.064 Score=54.14 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=44.7
Q ss_pred eEEEEEEeeEEEccCCCCCCEEEEEEEEEEE---cccE-EEEEEEEEEccccccCCCceEEEEEEEEEEEeeC
Q 013560 143 LLVTASVDKIALKKSISVDIDLKIVGAVIWV---GRSS-IEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDS 211 (441)
Q Consensus 143 ~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~v---GrSS-meV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~ 211 (441)
.+|-..= +|.+.+|++.++.|++.++|+.+ |+-. +++...+.... ...++++...|++++..
T Consensus 93 ~lVHgeq-~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~------~Ge~v~t~~st~~~Rg~ 158 (310)
T PLN02864 93 LLLHGQQ-YIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKD------SGELLCMNRSTIFLRGA 158 (310)
T ss_pred heeeccc-eEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCC------CCcEEEEEEEEEEEeCC
Confidence 3554443 78999999999999999999987 3322 34444444322 25788999999999975
No 75
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.01 Score=56.52 Aligned_cols=90 Identities=17% Similarity=0.115 Sum_probs=68.0
Q ss_pred CCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCE
Q 013560 84 SQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDID 163 (441)
Q Consensus 84 ~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~ 163 (441)
+.-...+++.++.+ -.+..|.||||.|...||++.+.|++-..++. ..|||.+ ++.|..|+.....
T Consensus 123 s~~e~v~i~h~G~~------L~gy~~~iHgG~IATllde~L~~c~fl~~pnk-------~~vTanL-sisy~~pip~~~f 188 (237)
T KOG4781|consen 123 SHREMVVIFHLGKD------LTGYPGLVHGGAIATLLDEALAMCAFLALPNK-------IGVTANL-SISYKRPIPTNHF 188 (237)
T ss_pred CCCeEEEEEecccc------ccCCCCccchHHHHHHHHHHHHHhhcccCCch-------hheeeec-ccccCCCcccceE
Confidence 34445555555553 35667999999999999999988876654432 5799999 7999999999999
Q ss_pred EEEEEEEEEEcccEEEEEEEEEEc
Q 013560 164 LKIVGAVIWVGRSSIEIQLEVIQS 187 (441)
Q Consensus 164 l~i~~~V~~vGrSSmeV~v~v~~~ 187 (441)
+.+++++.|+-..-.-+..++.+.
T Consensus 189 ~vi~t~~~~~~Grk~~~~g~l~~~ 212 (237)
T KOG4781|consen 189 VVIRTQLDKVEGRKCKTFGELNVQ 212 (237)
T ss_pred EEEecchhhhcCcccceeeEEEEe
Confidence 999999999966555555555443
No 76
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=96.42 E-value=0.32 Score=41.60 Aligned_cols=110 Identities=13% Similarity=0.014 Sum_probs=73.5
Q ss_pred eeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEE
Q 013560 87 RTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKI 166 (441)
Q Consensus 87 ~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i 166 (441)
+.+...-++.|...-..|--..+.+-|-.++|++-.++++.+....... + ..+...+..+++++.|.+|+.+|+.|++
T Consensus 20 ~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~kf~~~v~pgd~l~i 97 (131)
T cd00493 20 RIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGK-G-NPPRLGYLAGVRKVKFRGPVLPGDTLTL 97 (131)
T ss_pred EEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhccccc-c-cCCcEEEEEEcceeEECCCcCCCCEEEE
Confidence 3444444444444333333333667788888999888877654433211 1 1222466778889999999999999999
Q ss_pred EEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEE
Q 013560 167 VGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIF 206 (441)
Q Consensus 167 ~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~ 206 (441)
+.++...+..-..+.++++.. .++++.+..++
T Consensus 98 ~~~i~~~~~~~~~~~~~~~~~--------g~~v~~~~~~~ 129 (131)
T cd00493 98 EVELLKVRRGLGKFDGRAYVD--------GKLVAEAELMA 129 (131)
T ss_pred EEEEEEeeCCEEEEEEEEEEC--------CEEEEEEEEEE
Confidence 999999877677777777663 36777777444
No 77
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=96.40 E-value=0.04 Score=49.36 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=63.9
Q ss_pred CCcCCCCCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHH-HHhcCCCCCCCCCceEEEEEEeeEEEccC
Q 013560 79 LTKTSSQSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTIS-VKHCSDDDSMTRPLLLVTASVDKIALKKS 157 (441)
Q Consensus 79 ~~r~~~dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a-~rh~~~~~~~~~p~~~VTasvD~i~F~~P 157 (441)
......+...++..||..+ +|++|++|||-+...+ .++||.. +...... + -.+ .+|-+.- +|.|++|
T Consensus 21 ~v~~~~~~~l~~~APL~pN-------~N~~~T~FgGSl~sla-tLaGW~lv~l~l~e~-~-~~~-~IVi~~~-~i~Y~~P 88 (144)
T PF09500_consen 21 KVTSYTGQRLELSAPLAPN-------INHHGTMFGGSLYSLA-TLAGWGLVWLQLKEA-G-LNG-DIVIADS-NIRYLKP 88 (144)
T ss_dssp EEEEEETTEEEEE--SGGG-------B-TTSSB-HHHHHHHH-HHHHHHHHHHHHHHH-T-----EEEEEEE-EEEE-S-
T ss_pred EEEEEcCCEEEEeccCCCC-------cCCCCCcchHHHHHHH-HHHHHHHHHHHHHHh-C-CCC-cEEEEeC-ceEEcCC
Confidence 3344566678888888664 6999999999999999 5555533 2222110 0 001 5666655 8999999
Q ss_pred CCCCCEEEEEEEEE-------------EEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEe
Q 013560 158 ISVDIDLKIVGAVI-------------WVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVAR 209 (441)
Q Consensus 158 i~~gd~l~i~~~V~-------------~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~ 209 (441)
+. .+++..+... .-||-.+.+.++++.++ ..++...-.||+.
T Consensus 89 v~--~d~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~~~--------~~~a~f~G~yv~l 143 (144)
T PF09500_consen 89 VT--GDFTARCSLPEPEDWERFLQTLARGGRARITLEVEIYSGG--------ELAAEFTGRYVAL 143 (144)
T ss_dssp ----S--EEEEE-------S---GGGGCTS-EEEEEEEEEEETT--------EEEEEEEEEEEEE
T ss_pred CC--CCcEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEECC--------EEEEEEEEEEEEE
Confidence 85 4455555555 33778899999998765 5688888888874
No 78
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=96.30 E-value=0.33 Score=42.61 Aligned_cols=108 Identities=11% Similarity=0.000 Sum_probs=71.6
Q ss_pred CeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCC-ceEEEEEEeeEEEccCCCCCC-E
Q 013560 86 SRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRP-LLLVTASVDKIALKKSISVDI-D 163 (441)
Q Consensus 86 S~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p-~~~VTasvD~i~F~~Pi~~gd-~ 163 (441)
.+.+..+-++.|...-..|-.....+=|-.++|.+=.++++.+....... ....+ .....+.++++.|.+|+.+|+ .
T Consensus 25 g~~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~ 103 (138)
T PF07977_consen 25 GRIVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAE-GTGEARKVPFLAGIRNVKFRGPVYPGDKT 103 (138)
T ss_dssp EEEEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSS-SCCCCCEEEEEEEEEEEEE-S-B-TTE-E
T ss_pred EEEEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccc-cCCCcceEEEeccccEEEECccEeCCCcE
Confidence 34666666666665555555555667788888999899988777764311 11111 245668899999999999999 9
Q ss_pred EEEEEEEEE---EcccEEEEEEEEEEccccccCCCceEEEEE
Q 013560 164 LKIVGAVIW---VGRSSIEIQLEVIQSTKEVSDTSDSVVLTA 202 (441)
Q Consensus 164 l~i~~~V~~---vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a 202 (441)
|+++.++.. .+..-..+...++.++ +.+++|
T Consensus 104 l~~~v~i~~~~~~~~~~~~~~~~~~vdg--------~~v~~~ 137 (138)
T PF07977_consen 104 LRIEVEIKKIRRREGGMAIFDGTAYVDG--------ELVAEA 137 (138)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEETT--------EEEEEE
T ss_pred EEEEEEEEEeecccCCEEEEEEEEEECC--------EEEEEE
Confidence 999999999 6777777888887765 566655
No 79
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=96.22 E-value=0.21 Score=43.92 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=69.5
Q ss_pred ceeec-CCeEEEEEEeCCCCCCCCCC------CcHHHHHHHHHHHHHHHHHhhcC------CCcEEEEEceEEEcCccCc
Q 013560 283 SILLR-DTRLENALICQPQQRNIHGR------IFGGFLMLRAFELAFSTAYAFAG------LMPCFLEVDHVDFLRPVDV 349 (441)
Q Consensus 283 ~v~~~-dt~~~~~~~v~P~~~N~~G~------vfGG~lm~~ade~A~~~A~~~~~------~~~vt~~vd~i~F~~Pv~v 349 (441)
.+.++ +..++....+.+++--..|. +-|=.++.++-.++++.+....+ ......+++++.|.+||++
T Consensus 21 i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~p 100 (140)
T TIGR01750 21 ILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVP 100 (140)
T ss_pred EEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCC
Confidence 44455 56788888888887544432 33555667777777654422111 2346788899999999999
Q ss_pred CcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEE
Q 013560 350 GDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFT 399 (441)
Q Consensus 350 Gd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv 399 (441)
||.|++++.+..... ....+.+.+++ ..++++.+.++|.
T Consensus 101 Gd~l~i~~~i~~~~~-----~~~~~~~~~~~------~g~~va~~~~~~~ 139 (140)
T TIGR01750 101 GDQLILHAEFLKKRR-----KIGKFKGEATV------DGKVVAEAEITFA 139 (140)
T ss_pred CCEEEEEEEEEEccC-----CEEEEEEEEEE------CCEEEEEEEEEEE
Confidence 999999999986553 23344444432 2457777777763
No 80
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=96.10 E-value=0.05 Score=53.33 Aligned_cols=80 Identities=20% Similarity=0.149 Sum_probs=57.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCC
Q 013560 306 GRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEF 385 (441)
Q Consensus 306 G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~ 385 (441)
+.+|||+++.++..+|. +.........++ ++.|++|+..+.-+.++..+++.|++ ..+.+|.+. ..
T Consensus 21 ~~~fGG~~~Aqal~Aa~----~tv~~~~~~~S~-h~~Fl~~~~~~~pv~~~V~~lR~GRs-----~~~r~V~~~--Q~-- 86 (271)
T TIGR00189 21 NRVFGGQVVGQALAAAS----KTVPEEFIPHSL-HSYFVRAGDPKKPIIYDVERLRDGRS-----FITRRVKAV--QH-- 86 (271)
T ss_pred CceEccHHHHHHHHHHH----hcCCCCCCccee-EEEecCCCCCCCCEEEEEEEeeCCCc-----eEEEEEEEE--EC--
Confidence 58999999999865554 333433334455 77999999999999999999999984 556666664 21
Q ss_pred cceeEEEEEEEEEEEe
Q 013560 386 RSSEVSNTFYFTFTVS 401 (441)
Q Consensus 386 ~~~~~~n~~~fTfv~~ 401 (441)
.+++.++..+|...
T Consensus 87 --g~~~~~a~asf~~~ 100 (271)
T TIGR00189 87 --GKTIFTLQASFQAE 100 (271)
T ss_pred --CEEEEEEEEEcccC
Confidence 35677777777643
No 81
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=96.01 E-value=0.061 Score=47.37 Aligned_cols=88 Identities=22% Similarity=0.049 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCc
Q 013560 307 RIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFR 386 (441)
Q Consensus 307 ~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~ 386 (441)
.+||.+++.++.. ..+..+.+.......++++.|.+||.+||.|+++++|+....+......--|.+.+.+.+.
T Consensus 55 ia~G~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq--- 128 (146)
T cd03451 55 LVNSLFTLSLALG---LSVNDTSLTAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQ--- 128 (146)
T ss_pred cccHHhHHHHHhh---heehhccccceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECC---
Confidence 4677777655421 1111122223334566799999999999999999999976532100111234455555553
Q ss_pred ceeEEEEEEEEEEE
Q 013560 387 SSEVSNTFYFTFTV 400 (441)
Q Consensus 387 ~~~~~n~~~fTfv~ 400 (441)
..+++.++..+...
T Consensus 129 ~g~~V~~~~~~~~~ 142 (146)
T cd03451 129 DGEPVLSFERTALV 142 (146)
T ss_pred CCCEEEEEEehhEE
Confidence 23456666555543
No 82
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=95.88 E-value=0.63 Score=39.71 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=57.5
Q ss_pred ceeecC-CeEEEEEEeCCCCCCCC------CCCcHHHHHHHHHHHHHHHHHhhcC------CCcEEEEEceEEEcCccCc
Q 013560 283 SILLRD-TRLENALICQPQQRNIH------GRIFGGFLMLRAFELAFSTAYAFAG------LMPCFLEVDHVDFLRPVDV 349 (441)
Q Consensus 283 ~v~~~d-t~~~~~~~v~P~~~N~~------G~vfGG~lm~~ade~A~~~A~~~~~------~~~vt~~vd~i~F~~Pv~v 349 (441)
.+.+.+ ..+.....+.+++-... +.+-|=.++.++-.++++.+..... ...+..++.++.|.+|+..
T Consensus 12 i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~p 91 (131)
T cd00493 12 VLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLP 91 (131)
T ss_pred EEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcCC
Confidence 334444 67788888888765444 3455555566666666665543321 2367788899999999999
Q ss_pred CcEEEEEEEEeeeec
Q 013560 350 GDFLRFKSCVLYTEL 364 (441)
Q Consensus 350 Gd~l~~~a~Vv~tg~ 364 (441)
||.|+++++++..+.
T Consensus 92 gd~l~i~~~i~~~~~ 106 (131)
T cd00493 92 GDTLTLEVELLKVRR 106 (131)
T ss_pred CCEEEEEEEEEEeeC
Confidence 999999999998764
No 83
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=95.83 E-value=0.5 Score=46.86 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=64.1
Q ss_pred cccCC-CCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEE
Q 013560 103 QYRDP-WNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQ 181 (441)
Q Consensus 103 ~~~N~-~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~ 181 (441)
...+. .-.+|||.++...= .+|.++...+ .+|. |+ +..|++|......|.......+=|+|-...+
T Consensus 25 ~s~~~g~~~vFGGqvvaQAL----~Aa~~TV~~~-------r~vh-Sl-h~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rr 91 (289)
T COG1946 25 SSPDSGLRRVFGGQVVAQAL----VAALRTVPED-------RVVH-SL-HSYFLRPGDPEQPIIYDVERLRDGRSFSTRR 91 (289)
T ss_pred CCCCcCCccccccchHHHHH----HHHHhhcCCC-------CCcc-ee-hhhhcCCCCcCCceEEEEEeccCCCceEeEE
Confidence 33343 35599999987652 3355655532 3444 44 5689999999999999999999999999999
Q ss_pred EEEEEccccccCCCceEEEEEEEEEEEee
Q 013560 182 LEVIQSTKEVSDTSDSVVLTANFIFVARD 210 (441)
Q Consensus 182 v~v~~~~~~~~~~~~~~v~~a~ft~Va~D 210 (441)
|..+|.+ +++..+...|-.-+
T Consensus 92 V~aiQ~g--------~~If~~~ASF~~~e 112 (289)
T COG1946 92 VDAIQHG--------KLIFSATASFQVPE 112 (289)
T ss_pred EEEEECC--------EEEEEEEeeccCCC
Confidence 9999976 66777776665533
No 84
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=95.83 E-value=0.064 Score=54.28 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=68.9
Q ss_pred EEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEE
Q 013560 295 LICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINI 374 (441)
Q Consensus 295 ~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~V 374 (441)
..|.|+..|..|++--|.+-.+.-+++-..-..+.+.+.+.-++ .+.|++||.+.+.|++..+|...|+. +-.+
T Consensus 337 ~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~~niiIE~i-~iyflk~vqid~~l~I~prIl~~gR~-----~a~i 410 (432)
T COG4109 337 VEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKKRNIIIENI-TIYFLKPVQIDSVLEIYPRILEEGRK-----FAKI 410 (432)
T ss_pred EEechhhccccccchHHHHHHHHHHHHHHHHHHhcCCceEEEee-eeeeecceecccEEEEeeeeeccccc-----ccee
Confidence 77999999999999999999999888876666677777777777 89999999999999999999999986 3356
Q ss_pred EEEEEEee
Q 013560 375 EVVAHVTR 382 (441)
Q Consensus 375 eV~~~v~~ 382 (441)
+|+.+..+
T Consensus 411 dvei~~~~ 418 (432)
T COG4109 411 DVEIYHDG 418 (432)
T ss_pred EEEEeeCc
Confidence 66665444
No 85
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=95.66 E-value=0.11 Score=46.68 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=43.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCc---EEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEee
Q 013560 307 RIFGGFLMLRAFELAFSTAYAFAGLMP---CFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTR 382 (441)
Q Consensus 307 ~vfGG~lm~~ade~A~~~A~~~~~~~~---vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~ 382 (441)
.+||-+++.++..+. +........ .....+++.|++||.+||.|+++++|.....+..++..+..++.+++..
T Consensus 58 Ia~G~~t~sl~~~l~---~~~~~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~ 133 (149)
T cd03450 58 IAHGFLTLSLLPALT---PQLFRVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEG 133 (149)
T ss_pred EECHHHHHHHHHHHH---HhcccCCCceEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeC
Confidence 467777776654332 111111111 2334578999999999999999999998765432212444455554443
No 86
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=95.64 E-value=0.079 Score=45.02 Aligned_cols=74 Identities=23% Similarity=0.150 Sum_probs=48.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeC
Q 013560 304 IHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRP 383 (441)
Q Consensus 304 ~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~ 383 (441)
..-.+||++++.++..++.- .+.+.........++.|.+||.+||.|+++++|+...... +.. .+.+.+.+.+.
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~-~~~--~v~~~~~~~n~ 114 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQ---WLPGTDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSK-GRG--VVTVRTEARNQ 114 (127)
T ss_pred CCceechHHHHHHHHhhhhh---hccCcccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccC-CCc--EEEEEEEEEeC
Confidence 34579999999988665432 2222123344446899999999999999999999875431 112 34455555554
No 87
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=95.64 E-value=0.12 Score=45.23 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeC
Q 013560 307 RIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRP 383 (441)
Q Consensus 307 ~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~ 383 (441)
.+||.+++.++..+.... ....+.......++++.|.+||.+||.|+++++|+....++.+ ..-.|.+.+.+.|.
T Consensus 52 ia~G~~~~a~~~~~~~~~-~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~-~~~~v~~~~~~~nq 126 (140)
T cd03446 52 IAHGLLTLSIATGLLQRL-GVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGE-DAGVVTRRIEVVNQ 126 (140)
T ss_pred eeccccHHHHHhhHhhhc-ccccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCC-CceEEEEEEEEEcC
Confidence 467777766653322110 0001112234566799999999999999999999977532211 11235555555554
No 88
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=95.61 E-value=0.27 Score=42.77 Aligned_cols=53 Identities=13% Similarity=-0.065 Sum_probs=35.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcC-CCcEEEEEceEEEcCccCcCcEEEEEEEEeeee
Q 013560 307 RIFGGFLMLRAFELAFSTAYAFAG-LMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTE 363 (441)
Q Consensus 307 ~vfGG~lm~~ade~A~~~A~~~~~-~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg 363 (441)
.+||-..+..+-.+. .. .+.+ ........ ++.|++||.+||.|+++.+|+...
T Consensus 44 iahG~l~~~~~~~~~--~~-~~~~~~~~~~~~~-~~rf~~PV~~gdtl~~~~~v~~~~ 97 (126)
T cd03447 44 ITHGMYTSAAVRALV--ET-WAADNDRSRVRSF-TASFVGMVLPNDELEVRLEHVGMV 97 (126)
T ss_pred eechhHHHHHHHHHH--HH-hccCCCcceEEEE-EEEEcccCcCCCEEEEEEEEEEEe
Confidence 367766666663332 22 2333 23344443 899999999999999999998764
No 89
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=95.51 E-value=0.63 Score=49.46 Aligned_cols=114 Identities=10% Similarity=0.074 Sum_probs=73.2
Q ss_pred CCeeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEE
Q 013560 85 QSRTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDL 164 (441)
Q Consensus 85 dS~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l 164 (441)
+.+.+....++.|...-..|--....+.|=.++|+|=.++++.+...... ..+......+++++.|.+|+.+||.|
T Consensus 347 ~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~----~~g~lg~LlgI~kvKF~~PV~PGDtL 422 (464)
T PRK13188 347 DTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPD----PENYSTYFMKIDKVKFRQKVVPGDTL 422 (464)
T ss_pred CCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCC----CCCceEEEEeccEEEEcCCCCCCCEE
Confidence 44555555555554332222222344666667899888877554322111 11114556888999999999999999
Q ss_pred EEEEEEEE-EcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEee
Q 013560 165 KIVGAVIW-VGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARD 210 (441)
Q Consensus 165 ~i~~~V~~-vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D 210 (441)
++.+.++. ..+.-..+.+++++. .++++.|.++++..+
T Consensus 423 ~I~veI~~~~~~giv~f~g~~~vd--------GelVaeael~~~v~~ 461 (464)
T PRK13188 423 IFKVELLSPIRRGICQMQGKAYVN--------GKLVCEAELMAQIVK 461 (464)
T ss_pred EEEEEEEEEecCCEEEEEEEEEEC--------CEEEEEEEEEEEEec
Confidence 99999987 334455677777754 378899999887654
No 90
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=95.48 E-value=0.14 Score=43.96 Aligned_cols=56 Identities=21% Similarity=0.043 Sum_probs=37.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeec
Q 013560 306 GRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTEL 364 (441)
Q Consensus 306 G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~ 364 (441)
-.+||-.++.++.. +.+..+.+.......-.++.|.+||.+||.|++++.|+....
T Consensus 51 ~ivhG~~~~a~~~~---~~~~~~~~~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~ 106 (122)
T PF01575_consen 51 PIVHGMLTLALASG---LLGDWLGPNPPARLGRFNVRFRAPVFPGDTLTAEVEVTEKRE 106 (122)
T ss_dssp SB-BHHHHHHHHHH---HHHHHHSTTECEEEEEEEEEESS--BTTEEEEEEEEEEEEEE
T ss_pred EEEccHHHHHHHHH---HHHHhccCccceEEEEEEEEEeccccCCCEEEEEEEEEEEEE
Confidence 46889988877743 233344443344455568999999999999999999997554
No 91
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=95.42 E-value=0.23 Score=42.61 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=44.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeC
Q 013560 307 RIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRP 383 (441)
Q Consensus 307 ~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~ 383 (441)
.+||.+++.++..+.. .+.+........ ++.|.+||.+||.|+++++|+..... . .|.+.+.+.|.
T Consensus 45 ia~G~~~~~~~~~~~~----~~~~~~~~~~~~-~~rf~~pv~~Gdtl~~~~~v~~~~~~----~--~v~~~~~~~nq 110 (123)
T cd03455 45 YVNGPTLAGLVIRYVT----DWAGPDARVKSF-AFRLGAPLYAGDTLRFGGRVTAKRDD----E--VVTVELWARNS 110 (123)
T ss_pred EEEHHHHHHHHHHHHH----HccCCcceEEEE-EEEeeccccCCCEEEEEEEEEeeccC----c--EEEEEEEEEcC
Confidence 3788888877764421 222323344555 79999999999999999999865432 1 45566666664
No 92
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=95.42 E-value=1 Score=40.51 Aligned_cols=115 Identities=11% Similarity=-0.094 Sum_probs=74.4
Q ss_pred eeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCC-EEE
Q 013560 87 RTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDI-DLK 165 (441)
Q Consensus 87 ~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd-~l~ 165 (441)
+......++.|...-..|--....+-|=.++|-|=.++++.+............+...+..+++++.|..|+.+|+ .|.
T Consensus 28 ~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~ 107 (150)
T cd01287 28 YLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKVT 107 (150)
T ss_pred EEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEEE
Confidence 4555555555543322222233446677778888888777655432210111112245668889999999999999 899
Q ss_pred EEEEEEEEcc----cEEEEEEEEEEccccccCCCceEEEEEEEEEEEe
Q 013560 166 IVGAVIWVGR----SSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVAR 209 (441)
Q Consensus 166 i~~~V~~vGr----SSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~ 209 (441)
++++++..+. .-+.+...++.++ +.++.|...=|.+
T Consensus 108 ~e~~i~~~~~~~~~~~~~~~~~~~vdg--------~~v~~a~~~~~~~ 147 (150)
T cd01287 108 YEVHIKEVGRDGPRPYIIADASLWVDG--------LRIYEAKDIAVRL 147 (150)
T ss_pred EEEEEEEEEccCCccEEEEEEEEEECC--------EEEEEEEccEEEe
Confidence 9999999975 6677777777754 6777777665554
No 93
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=95.39 E-value=1.6 Score=43.29 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=63.9
Q ss_pred CCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEE
Q 013560 106 DPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVI 185 (441)
Q Consensus 106 N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~ 185 (441)
++.+.+|||.++...=.+ |...+.. .++--|+ ++.|.+-..+...|...-.-.+-|++-..=.|+++
T Consensus 35 ~~~~~~fGG~i~sQaLaA----A~~TV~e--------~f~p~Sl-H~YFI~~gd~~~pI~Y~V~rirdGr~F~~R~V~Av 101 (294)
T KOG3016|consen 35 IPSNHAYGGQIASQALAA----ASKTVEE--------MFIPHSL-HCYFILVGDPNIPIIYDVKRIRDGRNFATRSVDAV 101 (294)
T ss_pred ccCcccccceehHHHHHH----HHhcccc--------cccccee-eeeeeecCCCCCceEEEeeeecCCceeEEEEEEEE
Confidence 677899999999876333 2333333 3455567 79999999889999999999999999999999999
Q ss_pred EccccccCCCceEEEEEEEEEE
Q 013560 186 QSTKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 186 ~~~~~~~~~~~~~v~~a~ft~V 207 (441)
|.+ +++.++.+.|-
T Consensus 102 Q~~--------k~If~~qiSF~ 115 (294)
T KOG3016|consen 102 QKG--------KTIFTLQISFQ 115 (294)
T ss_pred ECC--------eEEEEEEEEEc
Confidence 986 67788888776
No 94
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=94.94 E-value=1.8 Score=38.23 Aligned_cols=91 Identities=10% Similarity=-0.057 Sum_probs=65.5
Q ss_pred CCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCC-CCEEEEEEEEEEEcc-cEEEEEEEE
Q 013560 107 PWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISV-DIDLKIVGAVIWVGR-SSIEIQLEV 184 (441)
Q Consensus 107 ~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~-gd~l~i~~~V~~vGr-SSmeV~v~v 184 (441)
++|.+-|=.++|.|=.+++.++....... +. .+.....++++++.|.+++.+ ||.|.+......... .-..+.+++
T Consensus 43 ~~~~~P~~l~iE~mAQa~a~~~g~~~~~~-~~-~~~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~~~~~ 120 (138)
T cd01289 43 AHGRLPAWVGIEYMAQAIAAHGGLLARQQ-GN-PPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTI 120 (138)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHhc-CC-CCCcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEEEEEEE
Confidence 34778889999999888776543222111 11 112345678999999999766 999999999988875 777778887
Q ss_pred EEccccccCCCceEEEEEEEEEE
Q 013560 185 IQSTKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 185 ~~~~~~~~~~~~~~v~~a~ft~V 207 (441)
+..+ +++++|.++++
T Consensus 121 ~v~~--------~~va~a~l~~~ 135 (138)
T cd01289 121 EDQG--------GVLASGRLNVY 135 (138)
T ss_pred EECC--------EEEEEEEEEEE
Confidence 7653 78898988765
No 95
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=94.75 E-value=2.3 Score=37.55 Aligned_cols=108 Identities=13% Similarity=-0.050 Sum_probs=70.4
Q ss_pred ceeecCCeEEEEEEeCCCCCCC---CCCCcHHHHHHHHHHHHHHHHHh---hcC---CCcEEEEEceEEEcCccCc-CcE
Q 013560 283 SILLRDTRLENALICQPQQRNI---HGRIFGGFLMLRAFELAFSTAYA---FAG---LMPCFLEVDHVDFLRPVDV-GDF 352 (441)
Q Consensus 283 ~v~~~dt~~~~~~~v~P~~~N~---~G~vfGG~lm~~ade~A~~~A~~---~~~---~~~vt~~vd~i~F~~Pv~v-Gd~ 352 (441)
.+.+.++.+.+...+..+.-.. +|.+-|=.++..|-.++++.+.. -.+ .....++++++.|.+|+.. ||.
T Consensus 19 v~~~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~ 98 (138)
T cd01289 19 VISWDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGST 98 (138)
T ss_pred EEEEcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCCe
Confidence 4455566677776666654332 25666777777777776665422 122 2457899999999999755 999
Q ss_pred EEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEE
Q 013560 353 LRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTV 400 (441)
Q Consensus 353 l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~ 400 (441)
|.+++..+....+ ....+...+++. .++++.+.++++.
T Consensus 99 l~i~~~~~~~~~~----~~~~~~~~~~v~------~~~va~a~l~~~~ 136 (138)
T cd01289 99 LLIVVAELLQGDS----GLGVFECTIEDQ------GGVLASGRLNVYQ 136 (138)
T ss_pred eEEEeeeeeeCCC----cEEEEEEEEEEC------CEEEEEEEEEEEc
Confidence 9999998887642 233445555432 3578888887753
No 96
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=94.71 E-value=0.28 Score=43.43 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCc
Q 013560 307 RIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFR 386 (441)
Q Consensus 307 ~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~ 386 (441)
.+||.+++.++..+. +....+........+++.|++||.+||.|++++.|+....++. ...-.|.+.+.+.|.+
T Consensus 52 ia~G~l~~s~~~~l~---~~~~~~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~-~~~~~v~~~~~~~nq~-- 125 (142)
T cd03452 52 VAHGYFVLSAAAGLF---VDPAPGPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDG-QDYGVVRWDAEVTNQN-- 125 (142)
T ss_pred eecHHHHHHHHhhhC---ccCCcccEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCC-CCcEEEEEEEEEEecC--
Confidence 356666666654321 1111121112233579999999999999999999987653221 1112344455555542
Q ss_pred ceeEEEEEEEE
Q 013560 387 SSEVSNTFYFT 397 (441)
Q Consensus 387 ~~~~~n~~~fT 397 (441)
++++.++..+
T Consensus 126 -g~~V~~~~~~ 135 (142)
T cd03452 126 -GELVASYDIL 135 (142)
T ss_pred -CCEEEEEEeh
Confidence 3344444433
No 97
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=94.67 E-value=0.31 Score=48.50 Aligned_cols=82 Identities=20% Similarity=0.129 Sum_probs=58.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeC
Q 013560 304 IHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRP 383 (441)
Q Consensus 304 ~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~ 383 (441)
....+|||.++.++-.+|.-+ .......-++ ++.|++|+..+.-|.++...+..|++ +.+..|.+. ..
T Consensus 30 ~~r~~fGGqv~AQal~AA~~t----v~~~~~~hSl-h~~Fl~pg~~~~pi~y~Ve~lRdGRS-----fstr~V~a~--Q~ 97 (286)
T PRK10526 30 GLRQVFGGQVVGQALYAAKET----VPEERLVHSF-HSYFLRPGDSQKPIIYDVETLRDGNS-----FSARRVAAI--QN 97 (286)
T ss_pred CCCceechHHHHHHHHHHHhc----CCCCCCceEE-EEEcCCCCCCCCCEEEEEEEEeCCCc-----eEeEEEEEE--EC
Confidence 357899999999986555433 3323334454 67999999999989999999999984 556677664 32
Q ss_pred CCcceeEEEEEEEEEEEe
Q 013560 384 EFRSSEVSNTFYFTFTVS 401 (441)
Q Consensus 384 ~~~~~~~~n~~~fTfv~~ 401 (441)
.+++.++..+|...
T Consensus 98 ----g~~if~~~~sF~~~ 111 (286)
T PRK10526 98 ----GKPIFYMTASFQAP 111 (286)
T ss_pred ----CEEEEEEEEEeccC
Confidence 35677777777654
No 98
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=94.42 E-value=1.4 Score=46.82 Aligned_cols=111 Identities=18% Similarity=0.145 Sum_probs=73.0
Q ss_pred CceeecCCeEEEEEEeCCCCCCCCC------CCcHHHHHHHHHHHHHHHHHhh-c---CCCcEEEEEceEEEcCccCcCc
Q 013560 282 NSILLRDTRLENALICQPQQRNIHG------RIFGGFLMLRAFELAFSTAYAF-A---GLMPCFLEVDHVDFLRPVDVGD 351 (441)
Q Consensus 282 ~~v~~~dt~~~~~~~v~P~~~N~~G------~vfGG~lm~~ade~A~~~A~~~-~---~~~~vt~~vd~i~F~~Pv~vGd 351 (441)
..+.+.+..++....+.+++--..| .+.|=.++.+|-.++++.+... . +...+..+++++.|.+||.+||
T Consensus 341 rIl~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGD 420 (464)
T PRK13188 341 KIIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGD 420 (464)
T ss_pred EEeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCC
Confidence 4566667788888888887644333 3445455666666665554322 1 1234788899999999999999
Q ss_pred EEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEec
Q 013560 352 FLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSK 402 (441)
Q Consensus 352 ~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d 402 (441)
.|++++.++...++ ..+.+...+.+ .+++++.+.++|...+
T Consensus 421 tL~I~veI~~~~~~----giv~f~g~~~v------dGelVaeael~~~v~~ 461 (464)
T PRK13188 421 TLIFKVELLSPIRR----GICQMQGKAYV------NGKLVCEAELMAQIVK 461 (464)
T ss_pred EEEEEEEEEEEecC----CEEEEEEEEEE------CCEEEEEEEEEEEEec
Confidence 99999999873332 23344444442 2467788888886543
No 99
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=94.25 E-value=0.41 Score=41.74 Aligned_cols=55 Identities=11% Similarity=0.221 Sum_probs=37.8
Q ss_pred EEEEEeeEEEccCCCCCCEEEEEEEEEEEccc------EEEEEEEEEEccccccCCCceEEEEEEEEE
Q 013560 145 VTASVDKIALKKSISVDIDLKIVGAVIWVGRS------SIEIQLEVIQSTKEVSDTSDSVVLTANFIF 206 (441)
Q Consensus 145 VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrS------SmeV~v~v~~~~~~~~~~~~~~v~~a~ft~ 206 (441)
....++++.|.+|+++||.|++.++|..+..+ -+++.+.+...+ ...++++..+.
T Consensus 78 ~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~-------g~~v~~~~~~~ 138 (140)
T cd03446 78 AFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQR-------GEVVQSGEMSL 138 (140)
T ss_pred EEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCC-------CCEEEEEEEee
Confidence 34566799999999999999999999877422 344444444322 45666666554
No 100
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=93.89 E-value=0.76 Score=40.17 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=37.5
Q ss_pred EEEEEceEEEcCccCcCcEEEEEEEEeeeecc-C-CCCCeEEEEEEEEEeeCCCcceeEEEEEEEE
Q 013560 334 CFLEVDHVDFLRPVDVGDFLRFKSCVLYTELE-N-PDQPLINIEVVAHVTRPEFRSSEVSNTFYFT 397 (441)
Q Consensus 334 vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~-~-~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fT 397 (441)
....++++.|.+||.+||.|+++++|...... + .++.. |.+.+.+.|.+ .+++.++..+
T Consensus 76 ~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~--v~~~~~~~nq~---g~~v~~~~~~ 136 (140)
T cd03454 76 GSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGI--VTLRSETLNQR---GEVVLTFEAT 136 (140)
T ss_pred EEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeE--EEEEEEEEcCC---CCEEEEEEeh
Confidence 34455799999999999999999999877532 1 12223 55555555542 3344444433
No 101
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=93.80 E-value=1.6 Score=38.19 Aligned_cols=71 Identities=20% Similarity=0.112 Sum_probs=48.5
Q ss_pred EEEEEEeCCCCCCCC------CCCcHHHHHHHHHHHHHHHHHhhcC----C----CcEEEEEceEEEcCccCcCc-EEEE
Q 013560 291 LENALICQPQQRNIH------GRIFGGFLMLRAFELAFSTAYAFAG----L----MPCFLEVDHVDFLRPVDVGD-FLRF 355 (441)
Q Consensus 291 ~~~~~~v~P~~~N~~------G~vfGG~lm~~ade~A~~~A~~~~~----~----~~vt~~vd~i~F~~Pv~vGd-~l~~ 355 (441)
+.....+.+++--.. ..+-|=.++..+-.++++.+..... + .+....++++.|++||..|| .|++
T Consensus 27 ~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~ 106 (138)
T PF07977_consen 27 IVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGDKTLRI 106 (138)
T ss_dssp EEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE-EEEE
T ss_pred EEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCCcEEEE
Confidence 788888888876443 3455666666777777777655421 1 25678899999999999999 9999
Q ss_pred EEEEee
Q 013560 356 KSCVLY 361 (441)
Q Consensus 356 ~a~Vv~ 361 (441)
++++..
T Consensus 107 ~v~i~~ 112 (138)
T PF07977_consen 107 EVEIKK 112 (138)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999998
No 102
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=93.71 E-value=0.56 Score=42.60 Aligned_cols=57 Identities=19% Similarity=0.102 Sum_probs=42.4
Q ss_pred eeEEEccCCCCCCEEEEEEEEEEE----cccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCC
Q 013560 150 DKIALKKSISVDIDLKIVGAVIWV----GRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKT 213 (441)
Q Consensus 150 D~i~F~~Pi~~gd~l~i~~~V~~v----GrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~ 213 (441)
+++.|++|+++||.|.++..|..+ ++--+.+.+++... ...+++.+..+++.+..+.
T Consensus 89 q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq-------~Ge~V~~~~~~~~~r~~~~ 149 (159)
T PRK13692 89 QVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNE-------EGDVVQETYTTLAGRAGED 149 (159)
T ss_pred eEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcC-------CCCEEEEEEEEEEEecCCc
Confidence 479999999999999999999754 22345555555532 2578899999999987533
No 103
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=93.65 E-value=1.4 Score=39.56 Aligned_cols=85 Identities=26% Similarity=0.256 Sum_probs=55.9
Q ss_pred CCcHHHHHHH-HHHHHHHHHHhhcC---CCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEee
Q 013560 307 RIFGGFLMLR-AFELAFSTAYAFAG---LMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTR 382 (441)
Q Consensus 307 ~vfGG~lm~~-ade~A~~~A~~~~~---~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~ 382 (441)
=++.|.|+-. +-.+++..+....+ ..+..+++|++.|.+||..||.+.++..++...... .-.....+.|
T Consensus 56 PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~----~~~~~~~a~V-- 129 (147)
T COG0764 56 PIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLG----IGKAKGVATV-- 129 (147)
T ss_pred CCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCCCEEEEEEEEEEecccc----eEEEEEEEEE--
Confidence 3667776544 44455444433222 267899999999999999999999999998877431 1223333332
Q ss_pred CCCcceeEEEEEEEEEEEe
Q 013560 383 PEFRSSEVSNTFYFTFTVS 401 (441)
Q Consensus 383 ~~~~~~~~~n~~~fTfv~~ 401 (441)
.+++++.+.++|...
T Consensus 130 ----dg~~v~~a~~~~~~~ 144 (147)
T COG0764 130 ----DGKVVAEAELLFAGV 144 (147)
T ss_pred ----CCEEEEEEEEEEEEe
Confidence 235688888888754
No 104
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=93.60 E-value=0.97 Score=38.18 Aligned_cols=67 Identities=10% Similarity=-0.055 Sum_probs=43.8
Q ss_pred CcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEccc----EEEEEEEE
Q 013560 109 NEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRS----SIEIQLEV 184 (441)
Q Consensus 109 G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrS----SmeV~v~v 184 (441)
-.++|+.++.++..+... +.... + ..+... .++.|.+|+.+||.|++.++|.....+ -+.+.+++
T Consensus 43 ~i~~g~~~~~~~~~~~~~----~~~~~-----~-~~~~~~-~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~ 111 (127)
T cd03441 43 RIAHGMLTLSLASGLLVQ----WLPGT-----D-GANLGS-QSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEA 111 (127)
T ss_pred ceechHHHHHHHHhhhhh----hccCc-----c-cceeEE-eEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEE
Confidence 458888888888765432 22210 1 223333 389999999999999999999987432 34455555
Q ss_pred EE
Q 013560 185 IQ 186 (441)
Q Consensus 185 ~~ 186 (441)
..
T Consensus 112 ~n 113 (127)
T cd03441 112 RN 113 (127)
T ss_pred Ee
Confidence 43
No 105
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=93.59 E-value=1.7 Score=37.47 Aligned_cols=52 Identities=21% Similarity=0.098 Sum_probs=34.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeee
Q 013560 307 RIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTE 363 (441)
Q Consensus 307 ~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg 363 (441)
.+||-+++.++..+. +..+.+.. ..+.. ++.|++||.+||.|+++++|+...
T Consensus 46 i~~G~~~~~~~~~~~---~~~~~~~~-~i~~~-~~rf~~Pv~~Gdtl~~~~~v~~~~ 97 (127)
T cd03453 46 IAHGMLTMGLLGRLV---TDWVGDPG-RVVSF-GVRFTKPVPVPDTLTCTGIVVEKT 97 (127)
T ss_pred EecHHHHHHHHHHHH---HHHcCCcc-ceEEE-EEEECCcCcCCCEEEEEEEEEEEE
Confidence 466777666663222 22222222 23454 589999999999999999998654
No 106
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=93.32 E-value=1.5 Score=37.52 Aligned_cols=77 Identities=12% Similarity=0.029 Sum_probs=46.8
Q ss_pred ccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEcccc
Q 013560 111 VRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKE 190 (441)
Q Consensus 111 v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~ 190 (441)
++|..++.++..+.. .+.+. .....+. ++.|.+|+.+||.|++.++|.....+. .+.++++..+
T Consensus 46 a~G~~~~~~~~~~~~----~~~~~--------~~~~~~~-~~rf~~pv~~Gdtl~~~~~v~~~~~~~-~v~~~~~~~n-- 109 (123)
T cd03455 46 VNGPTLAGLVIRYVT----DWAGP--------DARVKSF-AFRLGAPLYAGDTLRFGGRVTAKRDDE-VVTVELWARN-- 109 (123)
T ss_pred EEHHHHHHHHHHHHH----HccCC--------cceEEEE-EEEeeccccCCCEEEEEEEEEeeccCc-EEEEEEEEEc--
Confidence 677777777764432 22221 1122344 799999999999999999999765443 4444444333
Q ss_pred ccCCCceEEEEEEEEE
Q 013560 191 VSDTSDSVVLTANFIF 206 (441)
Q Consensus 191 ~~~~~~~~v~~a~ft~ 206 (441)
+...++..+..+.
T Consensus 110 ---q~G~~v~~g~a~v 122 (123)
T cd03455 110 ---SEGDHVMAGTATV 122 (123)
T ss_pred ---CCCCEEEeEEEEE
Confidence 1245666666553
No 107
>PLN02868 acyl-CoA thioesterase family protein
Probab=92.75 E-value=0.65 Score=48.59 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=56.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEee
Q 013560 303 NIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTR 382 (441)
Q Consensus 303 N~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~ 382 (441)
+..+++|||+++.++-.+|. +.........++ ++.|+.|...+.-+.++..++..|++ ..+..|.+. .
T Consensus 155 ~~~~~~fGG~~~aqal~Aa~----~~~~~~~~~~s~-~~~Fl~~~~~~~pv~~~V~~lr~Grs-----~~~r~v~~~--Q 222 (413)
T PLN02868 155 PTFGKVFGGQLVGQALAAAS----KTVDPLKLVHSL-HAYFLLVGDINLPIIYQVERIRDGHN-----FATRRVDAI--Q 222 (413)
T ss_pred cccccccchHHHHHHHHHHH----ccCCCCCCceEe-eeeecCCCCCCCCEEEEEEEEcCCCc-----eEeeEEEEE--E
Confidence 34688999999998754443 333322223344 56999888877668899999999984 556666663 2
Q ss_pred CCCcceeEEEEEEEEEEEe
Q 013560 383 PEFRSSEVSNTFYFTFTVS 401 (441)
Q Consensus 383 ~~~~~~~~~n~~~fTfv~~ 401 (441)
. .+++.++..+|...
T Consensus 223 ~----g~~~~~~~~sf~~~ 237 (413)
T PLN02868 223 K----GKVIFTLFASFQKE 237 (413)
T ss_pred C----CeeEEEEeeccccC
Confidence 1 35667777787654
No 108
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=92.68 E-value=0.79 Score=41.56 Aligned_cols=31 Identities=39% Similarity=0.417 Sum_probs=26.3
Q ss_pred EEEEEceEEEcCccCcCcEEEEEEEEeeeec
Q 013560 334 CFLEVDHVDFLRPVDVGDFLRFKSCVLYTEL 364 (441)
Q Consensus 334 vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~ 364 (441)
.-...+++.|.+||.+||.|+.++.|+....
T Consensus 94 ~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~ 124 (159)
T COG2030 94 ANLGGDEVRFVKPVFPGDTLRARVEVLDKRP 124 (159)
T ss_pred eeccccceEecCCCCCCCEEEEEEEEEEeee
Confidence 3556799999999999999999999987643
No 109
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=92.56 E-value=6.4 Score=38.00 Aligned_cols=166 Identities=12% Similarity=0.059 Sum_probs=101.5
Q ss_pred CCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeec
Q 013560 140 RPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPV 219 (441)
Q Consensus 140 ~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pV 219 (441)
.|..+|--. .|++.+|...|+.|+++....-..+--+.-.+.+... ......+..+++.+|.++.||+.+
T Consensus 53 ~l~WiV~~~--~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~~~--------gg~Lie~~a~wilmn~dTrkp~ri 122 (250)
T COG3884 53 HLLWIVRRT--EIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLDGR--------GGGLIEIEAFWILMNRDTRKPARI 122 (250)
T ss_pred CceEEEEEE--EEEEeeccccCCcceEEEeeccccceEEEEEEEEecC--------CCcEEEEEEEEEEEccccccceec
Confidence 454555443 5999999999999999999988888777777777652 345677788888888889999888
Q ss_pred cccC--C-CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHhcccccCCCCcccCCceeecCCeEEEEEE
Q 013560 220 NRLS--P-QTEREKSLFEEAEARSKLRKRKTGGDRRELDNGEVNRLEALLAEGRVICDMPALADRNSILLRDTRLENALI 296 (441)
Q Consensus 220 p~l~--p-~t~~E~~l~~~a~~r~~~R~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~p~~~~~~~v~~~dt~~~~~~~ 296 (441)
++-. | .+..|+. .+|-. ....+ +. +......+.
T Consensus 123 ~~d~la~~~~t~~~k---------~~r~~----~~l~~-~~------------------------------e~s~~~~f~ 158 (250)
T COG3884 123 TDDLLAPFNLTTEKK---------RLRWP----KYLSS-RL------------------------------EASEIHDFP 158 (250)
T ss_pred cHHHhhhhcccchhh---------eeccc----cccCc-cc------------------------------cccccccce
Confidence 7511 1 1111110 00000 00000 00 111111233
Q ss_pred eCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeec
Q 013560 297 CQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTEL 364 (441)
Q Consensus 297 v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~ 364 (441)
|+=-|...+|.+---.-..|+.|..++-+..+-+. .- + .+.+.+||..|+.|++...+-..+.
T Consensus 159 vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~p--~r--~-~l~y~keva~G~~iti~~e~~~~~s 221 (250)
T COG3884 159 VRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYGP--LR--L-TLEYVKEVAPGEKITIVYEVHPLES 221 (250)
T ss_pred eEEEeeccccccccceehHHHHHHHhhhhHhhccc--ce--e-EEEEEcccCCCCeEEEEEEEcccCc
Confidence 44445555555555667888988887666554331 11 1 4688999999999997666654443
No 110
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=92.46 E-value=0.93 Score=44.41 Aligned_cols=90 Identities=14% Similarity=0.011 Sum_probs=57.4
Q ss_pred CcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEc-c
Q 013560 97 DDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVG-R 175 (441)
Q Consensus 97 d~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vG-r 175 (441)
...+|..|+|.+|||.+.+|++|+-++.....+. .. .+ .++ .|.|.+.+..|+.|.+...+...+ .
T Consensus 169 ~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~~--~~--------~~--~~i-~I~y~~E~~~gd~i~~~~~~~~~~~~ 235 (261)
T PF01643_consen 169 EFTVRYSDIDMNGHVNNARYLDWALDALPEEFLE--KY--------QI--KSI-DINYKKEIRYGDTITSYTEVEKDEEE 235 (261)
T ss_dssp EEE--GGGEETTTCE-HHHHHHHHHCCS-HHHHC--CE--------EE--EEE-EEEE-S--BTT-EEEEEEEEEEECCT
T ss_pred cccccHHHCCCCCCcCHHHHHHHHHHhCcchhhc--cC--------Cc--EEE-EEEEccccCCCCEEEEEEEEcccccC
Confidence 4467899999999999999999996665433222 11 22 455 699999999999999999887554 3
Q ss_pred cEEEEEEEEEEccccccCCCceEEEEEEEEE
Q 013560 176 SSIEIQLEVIQSTKEVSDTSDSVVLTANFIF 206 (441)
Q Consensus 176 SSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~ 206 (441)
........+...+ +..++.+.+.+
T Consensus 236 ~~~~~~h~i~~~~-------g~~~~~~~~~W 259 (261)
T PF01643_consen 236 DGLSTLHEIRNED-------GEEVARARTEW 259 (261)
T ss_dssp TEEEEEEEEECT--------TCEEEEEEEEE
T ss_pred CceEEEEEEEcCC-------CceEEEEEEEE
Confidence 4566777776553 36667776654
No 111
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=92.40 E-value=8 Score=34.79 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=59.2
Q ss_pred ccHhHH-HHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEccc
Q 013560 111 VRIGKL-LEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTK 189 (441)
Q Consensus 111 v~gG~l-Le~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~ 189 (441)
+.-|.| ++.|=.+++..+.+..... .....-+++|++.|++|+.+||-+.+.......+..-+.+.--....|
T Consensus 57 imPGVLileamaQ~~g~~~~~~~~~~-----~~~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~Vd- 130 (147)
T COG0764 57 IMPGVLILEAMAQAAGFLLGWLLGNK-----GKLGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVATVD- 130 (147)
T ss_pred CcchhHHHHHHHHHHHHHHhccccCC-----ccEEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEEEC-
Confidence 666665 4555555555444332211 024566899999999999999999999999988855555533332222
Q ss_pred cccCCCceEEEEEEEEEEEee
Q 013560 190 EVSDTSDSVVLTANFIFVARD 210 (441)
Q Consensus 190 ~~~~~~~~~v~~a~ft~Va~D 210 (441)
.++++.|.++++-++
T Consensus 131 ------g~~v~~a~~~~~~~~ 145 (147)
T COG0764 131 ------GKVVAEAELLFAGVE 145 (147)
T ss_pred ------CEEEEEEEEEEEEee
Confidence 367999999987754
No 112
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=92.08 E-value=0.98 Score=41.02 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=38.9
Q ss_pred ceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEe
Q 013560 339 DHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVS 401 (441)
Q Consensus 339 d~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~ 401 (441)
+++.|++||++||.|+++.+|+..-.+ .++.. |.....+.|. ..+++..+.-|++.+
T Consensus 89 q~~~f~~PV~~GDtL~~~~eV~~~~~~-~~~gi--v~~~~~v~Nq---~Ge~V~~~~~~~~~r 145 (159)
T PRK13692 89 QVLKFEKPIVAGDKLYCDVYVDSVREA-HGTQI--IVTKNIVTNE---EGDVVQETYTTLAGR 145 (159)
T ss_pred eEEEEeCCccCCCEEEEEEEEEEEEEc-CCceE--EEEEEEEEcC---CCCEEEEEEEEEEEe
Confidence 689999999999999999999854321 12223 4444444554 245677777777765
No 113
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=91.68 E-value=1.7 Score=39.83 Aligned_cols=55 Identities=9% Similarity=0.081 Sum_probs=41.5
Q ss_pred eeEEEccCCCCCCEEEEEEEEEEEc----ccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeC
Q 013560 150 DKIALKKSISVDIDLKIVGAVIWVG----RSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDS 211 (441)
Q Consensus 150 D~i~F~~Pi~~gd~l~i~~~V~~vG----rSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~ 211 (441)
.++.|++|+.+||.|+++..|..+- +..+.+..++.. +...+++.+..+++.++.
T Consensus 89 q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~N-------Q~Ge~V~~~~~~~~~~~~ 147 (166)
T PRK13691 89 QRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTN-------DDGELVMEAYTTLMGQQG 147 (166)
T ss_pred eEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEC-------CCCCEEEEEEEEEEEecC
Confidence 5788999999999999999998662 223444444443 235788999999999886
No 114
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=91.15 E-value=1.2 Score=39.08 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=40.7
Q ss_pred EEEeeEEEccCCCCCCEEEEEEEEEEEcc-------cEEEEEEEEEEccccccCCCceEEEEEEEEEEEe
Q 013560 147 ASVDKIALKKSISVDIDLKIVGAVIWVGR-------SSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVAR 209 (441)
Q Consensus 147 asvD~i~F~~Pi~~gd~l~i~~~V~~vGr-------SSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~ 209 (441)
..++++.|.+|+.+||.|+++++|+..-. .-+++.+++...+ ..+++.+..+....
T Consensus 81 ~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~-------g~~V~~~~~~~~~~ 143 (146)
T cd03451 81 LGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQD-------GEPVLSFERTALVP 143 (146)
T ss_pred cCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCC-------CCEEEEEEehhEEE
Confidence 45568999999999999999999997632 2455555555322 46788888776553
No 115
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=90.41 E-value=3.1 Score=44.41 Aligned_cols=83 Identities=19% Similarity=0.147 Sum_probs=49.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCc
Q 013560 307 RIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFR 386 (441)
Q Consensus 307 ~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~ 386 (441)
.+||-+++.++-.+ .+..+.+...+... .++.|.+||.+||.|+++.+|+..... +. .|.+.+++.|.
T Consensus 60 IahG~l~~s~~~~l---~~~~~~g~~~~~~~-~~~rF~~PV~~GDtl~~~~~V~~~~~~---~~--~v~~~~~~~nq--- 127 (466)
T PRK08190 60 VAHGMWGGALISAV---LGTRLPGPGTIYLG-QSLRFRRPVRIGDTLTVTVTVREKDPE---KR--IVVLDCRCTNQ--- 127 (466)
T ss_pred eeCHHHHHHHHHHH---HhhhCCCcceEEEE-EEEEEeCCcCCCCEEEEEEEEEEEECC---CC--EEEEEEEEEeC---
Confidence 46776666655322 12223333333334 589999999999999999999865321 22 34455555563
Q ss_pred ceeEEEEEEEEEEEe
Q 013560 387 SSEVSNTFYFTFTVS 401 (441)
Q Consensus 387 ~~~~~n~~~fTfv~~ 401 (441)
..+++.++..++...
T Consensus 128 ~G~~V~~g~~~~l~~ 142 (466)
T PRK08190 128 DGEVVITGTAEVIAP 142 (466)
T ss_pred CCCEEEEEEEEeecc
Confidence 234556666666554
No 116
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=90.26 E-value=1.9 Score=37.59 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=38.0
Q ss_pred EEEEEeeEEEccCCCCCCEEEEEEEEEEEcc-------cEEEEEEEEEEccccccCCCceEEEEEEEEEE
Q 013560 145 VTASVDKIALKKSISVDIDLKIVGAVIWVGR-------SSIEIQLEVIQSTKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 145 VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGr-------SSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~V 207 (441)
+....+++.|.+|+.+||.|++.+.|..+-. .-+.+.+.+...+ ..+++.+..+.+
T Consensus 76 ~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~-------g~~v~~~~~~~~ 138 (140)
T cd03454 76 GSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQR-------GEVVLTFEATVL 138 (140)
T ss_pred EEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCC-------CCEEEEEEehhe
Confidence 3345568999999999999999999987632 2444455544332 456677665543
No 117
>PLN02370 acyl-ACP thioesterase
Probab=90.03 E-value=12 Score=39.41 Aligned_cols=112 Identities=12% Similarity=-0.011 Sum_probs=84.1
Q ss_pred EEEEEEeCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhc---------------CCCcEEEEEceEEEcCccCcCcEEEE
Q 013560 291 LENALICQPQQRNIHGRIFGGFLMLRAFELAFSTAYAFA---------------GLMPCFLEVDHVDFLRPVDVGDFLRF 355 (441)
Q Consensus 291 ~~~~~~v~P~~~N~~G~vfGG~lm~~ade~A~~~A~~~~---------------~~~~vt~~vd~i~F~~Pv~vGd~l~~ 355 (441)
.+-.+.|..-+++..|++.=..||.++-++|..-+.... +...|...+ +|+|.+|.+.||.|++
T Consensus 140 y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~-~I~~~R~P~~gD~V~V 218 (419)
T PLN02370 140 FRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRM-QVLVDRYPTWGDVVQV 218 (419)
T ss_pred EEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEE-EEEeCcCCCCCCEEEE
Confidence 466788999999999999999999999999877764321 113566666 8999999999999999
Q ss_pred EEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEecc-CCCCccCCc
Q 013560 356 KSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKA-VTNGFRIRN 412 (441)
Q Consensus 356 ~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~-~~~~~~v~~ 412 (441)
+..+...++. ++.. .-.+.+.+ +++++..+.-+++..|- .++|.++|+
T Consensus 219 ~Twv~~~~k~-----~~~R--df~I~D~~--~Ge~la~A~SvWV~mD~~TRRpvRIP~ 267 (419)
T PLN02370 219 DTWVSASGKN-----GMRR--DWLVRDCK--TGETLTRASSVWVMMNKLTRRLSKIPE 267 (419)
T ss_pred EEEEeeCCCC-----EEEE--EEEEEECC--CCeEEEEEEEEEEEEECCCCcccCCCH
Confidence 9999887763 3332 33334532 35678888888888875 467777775
No 118
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=89.92 E-value=2.6 Score=38.55 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=41.6
Q ss_pred ceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEeccC
Q 013560 339 DHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKAV 404 (441)
Q Consensus 339 d~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~~ 404 (441)
.++.|++||.+||.|+++.+|..... ..++.. |.....+.|. .++++.++..+++..+..
T Consensus 89 q~~~f~rPV~~GDtL~~~~~V~~~~~-~~~~g~--V~~~~~~~NQ---~Ge~V~~~~~~~~~~~~~ 148 (166)
T PRK13691 89 QRFVFHKPVLAGDKLWARMDIHSVDE-RFGADI--VVTRNVCTND---DGELVMEAYTTLMGQQGD 148 (166)
T ss_pred eEEEEeCCcCCCCEEEEEEEEEEEEE-cCCCcE--EEEEEEEECC---CCCEEEEEEEEEEEecCC
Confidence 57889999999999999999986642 112223 4455555554 345777888888776543
No 119
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=89.68 E-value=8.7 Score=33.27 Aligned_cols=50 Identities=10% Similarity=0.049 Sum_probs=35.2
Q ss_pred eEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEE
Q 013560 151 KIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIF 206 (441)
Q Consensus 151 ~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~ 206 (441)
++.|.+|+.+||.|+++++|+..-.--+.+.+++...+. ...++.+..+.
T Consensus 74 ~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq~~------g~~V~~g~~~v 123 (126)
T cd03447 74 TASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNEET------GELVLRGEAEV 123 (126)
T ss_pred EEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEECCC------CCEEEEEEEEE
Confidence 789999999999999999998865444555555554320 24566665544
No 120
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=89.40 E-value=2.3 Score=37.59 Aligned_cols=54 Identities=6% Similarity=0.073 Sum_probs=38.2
Q ss_pred EEEeeEEEccCCCCCCEEEEEEEEEEEcc------cEEEEEEEEEEccccccCCCceEEEEEEEEEE
Q 013560 147 ASVDKIALKKSISVDIDLKIVGAVIWVGR------SSIEIQLEVIQSTKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 147 asvD~i~F~~Pi~~gd~l~i~~~V~~vGr------SSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~V 207 (441)
...+++.|.+|+.+||.|++.+.|..+-. -.+.+.+++...+ ...++.+..++.
T Consensus 78 ~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~-------g~~V~~~~~~~~ 137 (142)
T cd03452 78 YGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQN-------GELVASYDILTL 137 (142)
T ss_pred eccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecC-------CCEEEEEEehHe
Confidence 34579999999999999999999988732 1455666665433 456666665543
No 121
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=89.22 E-value=2 Score=42.58 Aligned_cols=97 Identities=16% Similarity=0.129 Sum_probs=63.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEee
Q 013560 303 NIHGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTR 382 (441)
Q Consensus 303 N~~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~ 382 (441)
+++|.+|||.|+.++-.+|..+ .+...+.-++ +..|++.+.+---+...-.-+.-|++ .+.=.|.|. .
T Consensus 35 ~~~~~~fGG~i~sQaLaAA~~T----V~e~f~p~Sl-H~YFI~~gd~~~pI~Y~V~rirdGr~-----F~~R~V~Av--Q 102 (294)
T KOG3016|consen 35 IPSNHAYGGQIASQALAAASKT----VEEMFIPHSL-HCYFILVGDPNIPIIYDVKRIRDGRN-----FATRSVDAV--Q 102 (294)
T ss_pred ccCcccccceehHHHHHHHHhc----ccccccccee-eeeeeecCCCCCceEEEeeeecCCce-----eEEEEEEEE--E
Confidence 7889999999999996555322 3445555666 67999988877777777777766653 444344443 2
Q ss_pred CCCcceeEEEEEEEEEEEe--ccCCCCccCCcccc
Q 013560 383 PEFRSSEVSNTFYFTFTVS--KAVTNGFRIRNVVP 415 (441)
Q Consensus 383 ~~~~~~~~~n~~~fTfv~~--d~~~~~~~v~~v~P 415 (441)
..+++.++++.|-.. |..-...+.|++.|
T Consensus 103 ----~~k~If~~qiSF~~~~ks~~~h~~e~P~v~~ 133 (294)
T KOG3016|consen 103 ----KGKTIFTLQISFQQSEKSSIIHQCEMPEVPP 133 (294)
T ss_pred ----CCeEEEEEEEEEccccCCCccccCCCCCCCC
Confidence 246888999999733 22223345566555
No 122
>COG5496 Predicted thioesterase [General function prediction only]
Probab=88.96 E-value=13 Score=32.51 Aligned_cols=85 Identities=5% Similarity=0.025 Sum_probs=64.6
Q ss_pred cccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEE--ccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEc
Q 013560 110 EVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIAL--KKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQS 187 (441)
Q Consensus 110 ~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F--~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~ 187 (441)
.+--+.++.++..++.-++..|...+ .-|+.. ++++ +.|+.+|..|++.+.+..+-..-..+.+.+...
T Consensus 30 VlATp~mi~~~E~a~~el~~~~Ld~g--------~ttVG~-ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~~~ 100 (130)
T COG5496 30 VLATPAMIGFMENASYELLQPYLDNG--------ETTVGT-EVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAMEG 100 (130)
T ss_pred eeehHHHHHHHHHHHHHHHHhhCcCC--------cceeeE-EEEeeeccCCCCCCeEEEEEEEEEEeccEEEEEEEEeeC
Confidence 34578899999988888888887653 223333 3454 579999999999999999977777777777632
Q ss_pred cccccCCCceEEEEEEEEEEEeeC
Q 013560 188 TKEVSDTSDSVVLTANFIFVARDS 211 (441)
Q Consensus 188 ~~~~~~~~~~~v~~a~ft~Va~D~ 211 (441)
...+..+.++=+-+|.
T Consensus 101 --------~~~Ig~g~h~R~iv~~ 116 (130)
T COG5496 101 --------GDKIGEGTHTRVIVPR 116 (130)
T ss_pred --------CcEEeeeEEEEEEecH
Confidence 3688899998888775
No 123
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=88.62 E-value=15 Score=31.73 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=65.3
Q ss_pred CCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcc-----cEEEEE
Q 013560 107 PWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGR-----SSIEIQ 181 (441)
Q Consensus 107 ~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGr-----SSmeV~ 181 (441)
+.+++-|=.|+|-+=.++-.+++.+.+.+. +..++..++ +++|..++..+..+.+...+..... +.+.+.
T Consensus 39 ~~dh~~gmll~Ea~RQa~~~~~h~~~~vp~----~~~~~~~~l-~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~ 113 (132)
T PF03756_consen 39 PGDHVPGMLLLEAARQAGIALAHRFYGVPL----DHQFVLTSL-DFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFR 113 (132)
T ss_pred CCCccChHHHHHHHHHHHHHhhccccCCCC----CceEEEEEE-EEEEccccccCCCEEEEEEEEeccccCCccceEEEE
Confidence 456788888999998888777766654421 224666677 6899988877778888888776544 488899
Q ss_pred EEEEEccccccCCCceEEEEEEEEEE
Q 013560 182 LEVIQSTKEVSDTSDSVVLTANFIFV 207 (441)
Q Consensus 182 v~v~~~~~~~~~~~~~~v~~a~ft~V 207 (441)
+.++|.+ ..++++.+++-
T Consensus 114 v~~~q~g--------~~~a~~~~~~t 131 (132)
T PF03756_consen 114 VTVSQGG--------RVVATASMTFT 131 (132)
T ss_pred EEEEECC--------EEEEEEEEEEE
Confidence 9999875 78888888764
No 124
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=88.40 E-value=12 Score=32.13 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=30.0
Q ss_pred EEEeeEEEccCCCCCCEEEEEEEEEEE----cccEEEEEEEEEEcc
Q 013560 147 ASVDKIALKKSISVDIDLKIVGAVIWV----GRSSIEIQLEVIQST 188 (441)
Q Consensus 147 asvD~i~F~~Pi~~gd~l~i~~~V~~v----GrSSmeV~v~v~~~~ 188 (441)
+.. ++.|.+|+.+||.|.+.++|+.. |+.-+.+.+++...+
T Consensus 71 ~~~-~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq~ 115 (127)
T cd03453 71 VSF-GVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQA 115 (127)
T ss_pred EEE-EEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEcC
Confidence 345 58999999999999999999764 233455666665443
No 125
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=88.18 E-value=5 Score=34.67 Aligned_cols=49 Identities=27% Similarity=0.159 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEE
Q 013560 308 IFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCV 359 (441)
Q Consensus 308 vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~V 359 (441)
+||-.++..+..+. . ..+.++......-.++.|.+||.+||.|+++..+
T Consensus 47 ahG~~t~a~~~~~~--~-~~~~~~~~~~~~~~~~rF~~PV~~gDtl~~~~~~ 95 (122)
T cd03448 47 LHGLCTYGFAARAV--L-EAFADGDPARFKAIKVRFSSPVFPGETLRTEMWK 95 (122)
T ss_pred ehhHHHHHHHHHHH--H-HHhcCCCcceeEEEEEEEcCCccCCCEEEEEEEE
Confidence 66766666553322 1 1233322232333489999999999999987764
No 126
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=88.00 E-value=6.3 Score=33.61 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=40.3
Q ss_pred cccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEE
Q 013560 110 EVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQ 186 (441)
Q Consensus 110 ~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~ 186 (441)
.+||-.++.++-.+.+ ...... + ......+ ++.|.+|+.+||.|.+.+.|+..-..+-.+.+++..
T Consensus 52 ivhG~~~~a~~~~~~~---~~~~~~------~-~~~~~~~-~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~~~ 117 (122)
T PF01575_consen 52 IVHGMLTLALASGLLG---DWLGPN------P-PARLGRF-NVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTVTV 117 (122)
T ss_dssp B-BHHHHHHHHHHHHH---HHHSTT------E-CEEEEEE-EEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred EEccHHHHHHHHHHHH---HhccCc------c-ceEEEEE-EEEEeccccCCCEEEEEEEEEEEEEcCceEEEEEEE
Confidence 4778777776644332 222221 0 1233333 899999999999999999999876666555555544
No 127
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=87.60 E-value=3.8 Score=36.75 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.3
Q ss_pred EEeeEEEccCCCCCCEEEEEEEEEEE
Q 013560 148 SVDKIALKKSISVDIDLKIVGAVIWV 173 (441)
Q Consensus 148 svD~i~F~~Pi~~gd~l~i~~~V~~v 173 (441)
..+++.|++|+.+||.|++.++|..+
T Consensus 88 g~~~~rF~~PV~~GDtl~~~~~V~~~ 113 (149)
T cd03450 88 GLDKVRFPAPVPVGSRVRGRFTLLSV 113 (149)
T ss_pred eccEEEeCcceeCCcEEEEEEEEEEE
Confidence 44689999999999999999999876
No 128
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=86.44 E-value=26 Score=32.12 Aligned_cols=95 Identities=8% Similarity=-0.214 Sum_probs=59.5
Q ss_pred eeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEE-E
Q 013560 87 RTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDL-K 165 (441)
Q Consensus 87 ~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l-~ 165 (441)
+.+....++.|...-..|--....+=|=.++|.|=.+++..+...... . ....+++++..|.+|+.+|+.+ +
T Consensus 51 ~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~------~-~g~l~gi~~~kfr~~v~Pgd~~~~ 123 (169)
T TIGR01749 51 YVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGP------G-RGRALGVGEVKFTGQVLPTAKKVT 123 (169)
T ss_pred EEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccC------C-ceEEeeccEEEEccCEecCCeEEE
Confidence 455555555554433233233344667778898888887665432211 1 1245678899999999999996 8
Q ss_pred EEEEEEEEcc---cEEEEEEEEEEcc
Q 013560 166 IVGAVIWVGR---SSIEIQLEVIQST 188 (441)
Q Consensus 166 i~~~V~~vGr---SSmeV~v~v~~~~ 188 (441)
++.++....+ .-..+.++++.++
T Consensus 124 l~v~i~~~~~~~~~~~~~~~~i~v~g 149 (169)
T TIGR01749 124 YRIHFKRVINRRLVMGIADGEVLVDG 149 (169)
T ss_pred EEEEEEEEeecCCcEEEEEEEEEECC
Confidence 9999888633 3455667776543
No 129
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=86.41 E-value=3.7 Score=35.33 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=33.5
Q ss_pred CcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeC
Q 013560 332 MPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRP 383 (441)
Q Consensus 332 ~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~ 383 (441)
+.+-.+ .++.|.+|+++||.|+++++|.....+.......-|.+.....|.
T Consensus 74 ~~vh~~-~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~ 124 (132)
T PF13452_consen 74 RLVHGE-QDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQ 124 (132)
T ss_dssp GEEEEE-EEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-C
T ss_pred hEEecC-cEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECC
Confidence 445555 489999999999999999999988765311234456666665554
No 130
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=85.40 E-value=30 Score=31.84 Aligned_cols=107 Identities=9% Similarity=-0.160 Sum_probs=66.3
Q ss_pred eeEEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCE-EE
Q 013560 87 RTSILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDID-LK 165 (441)
Q Consensus 87 ~~~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~-l~ 165 (441)
+.+....++.|...-..|--....+=|=.++|.|=.++++.+....... ....+++++..|..++.+|+. ++
T Consensus 54 ~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~-------~g~l~g~~~~kfr~~v~Pgd~~l~ 126 (172)
T PRK05174 54 YIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPG-------KGRALGVGEVKFTGQVLPTAKKVT 126 (172)
T ss_pred EEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhcccccC-------ceEEeeccEEEECccCcCCCEEEE
Confidence 3444444444443322222222335567788888888877664332211 123467889999999999998 89
Q ss_pred EEEEEEEEcc---cEEEEEEEEEEccccccCCCceEEEEEEEEEEE
Q 013560 166 IVGAVIWVGR---SSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVA 208 (441)
Q Consensus 166 i~~~V~~vGr---SSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va 208 (441)
++.++..+++ .-..+.++++.++ ++++.|...=|.
T Consensus 127 l~v~i~~~~~~~~~~~~~~~~i~v~g--------~~va~a~~~~l~ 164 (172)
T PRK05174 127 YEIDIKRVINRKLVMGIADGRVLVDG--------EEIYTAKDLKVG 164 (172)
T ss_pred EEEEEEEEecCCCCEEEEEEEEEECC--------EEEEEEEeeEEE
Confidence 9999999743 3456677777654 566776544443
No 131
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=85.35 E-value=16 Score=32.33 Aligned_cols=52 Identities=21% Similarity=0.029 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcC-----cEEEEEEEEeeee
Q 013560 307 RIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVG-----DFLRFKSCVLYTE 363 (441)
Q Consensus 307 ~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vG-----d~l~~~a~Vv~tg 363 (441)
.+||.+++.++-.+. . ..+.+...+ ... ++.|.+||.+| +.|+++++|+...
T Consensus 56 iahG~~~~a~~~~~~--~-~~~~~~~~~-~~~-~~rF~~pv~~g~D~~~~~l~~~~~V~~~~ 112 (142)
T PRK13693 56 IAHGMLTMGLGGGYV--T-SWVGDPGAV-TEY-NVRFTAVVPVPNDGKGAELVFNGRVKSVD 112 (142)
T ss_pred EecHHHHHHHHHHHH--H-HhcCCCcce-EEE-EEEecccEECCCCccceEEEEEEEEEEec
Confidence 377888777774421 1 122222223 344 79999999975 3899999999874
No 132
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=84.77 E-value=4.4 Score=45.35 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=31.8
Q ss_pred EEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeC
Q 013560 336 LEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRP 383 (441)
Q Consensus 336 ~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~ 383 (441)
..++++.|.+||.+||.|+++++|+....+..+ ..-.|.+.+.+.+.
T Consensus 613 ~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~-~~~~v~~~~~~~nq 659 (675)
T PRK11563 613 YGLENLRFLTPVKPGDTIQVRLTCKRKTPRRQA-PYGVVRWDVEVTNQ 659 (675)
T ss_pred cccceEEEcCCCCCCCEEEEEEEEEEEEecCCC-CceEEEEEEEEEEC
Confidence 345799999999999999999999877432111 11234555555553
No 133
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=84.13 E-value=4.8 Score=44.96 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.8
Q ss_pred EEceEEEcCccCcCcEEEEEEEEeeee
Q 013560 337 EVDHVDFLRPVDVGDFLRFKSCVLYTE 363 (441)
Q Consensus 337 ~vd~i~F~~Pv~vGd~l~~~a~Vv~tg 363 (441)
..+++.|++||++||.|+++++|+-..
T Consensus 602 g~~~~rF~~PV~~GDtl~~~~~V~e~~ 628 (663)
T TIGR02278 602 GLENLRFLEPVGPGDTIQVRLTVKRKT 628 (663)
T ss_pred ccceEEEcCCCCCCCEEEEEEEEEEEE
Confidence 347999999999999999999998664
No 134
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=83.95 E-value=4.2 Score=40.44 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=59.0
Q ss_pred CCCCCCC-CCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEE
Q 013560 299 PQQRNIH-GRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVV 377 (441)
Q Consensus 299 P~~~N~~-G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~ 377 (441)
....+.. -.+|||.++.++..+| .+......+.=|+ +..|++|...-.-+.+......-|++ ..+..|.
T Consensus 24 G~s~~~g~~~vFGGqvvaQAL~Aa----~~TV~~~r~vhSl-h~yFl~pgd~~~pi~y~Ve~lRdG~s-----fs~rrV~ 93 (289)
T COG1946 24 GSSPDSGLRRVFGGQVVAQALVAA----LRTVPEDRVVHSL-HSYFLRPGDPEQPIIYDVERLRDGRS-----FSTRRVD 93 (289)
T ss_pred cCCCCcCCccccccchHHHHHHHH----HhhcCCCCCccee-hhhhcCCCCcCCceEEEEEeccCCCc-----eEeEEEE
Confidence 3334443 4699999999985444 4444544444454 45999999999999998888887763 5677777
Q ss_pred EEEeeCCCcceeEEEEEEEEEEEe
Q 013560 378 AHVTRPEFRSSEVSNTFYFTFTVS 401 (441)
Q Consensus 378 ~~v~~~~~~~~~~~n~~~fTfv~~ 401 (441)
|.-- .+++..+...|-..
T Consensus 94 aiQ~------g~~If~~~ASF~~~ 111 (289)
T COG1946 94 AIQH------GKLIFSATASFQVP 111 (289)
T ss_pred EEEC------CEEEEEEEeeccCC
Confidence 6522 35666777777654
No 135
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=82.40 E-value=37 Score=30.50 Aligned_cols=90 Identities=8% Similarity=-0.043 Sum_probs=58.2
Q ss_pred eEEEEEEeCCCCCCCC------CCCcHHHHHHHHHHHHHHHHHhhcC--C------CcEEEEEceEEEcCccCcCc-EEE
Q 013560 290 RLENALICQPQQRNIH------GRIFGGFLMLRAFELAFSTAYAFAG--L------MPCFLEVDHVDFLRPVDVGD-FLR 354 (441)
Q Consensus 290 ~~~~~~~v~P~~~N~~------G~vfGG~lm~~ade~A~~~A~~~~~--~------~~vt~~vd~i~F~~Pv~vGd-~l~ 354 (441)
++.....+.|++--.. ..+-|=.++..|-.++++.+..... . .+++.+++++.|.+||..|| .|.
T Consensus 28 ~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~ 107 (150)
T cd01287 28 YLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKVT 107 (150)
T ss_pred EEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEEE
Confidence 5777777777653322 2344444555565665555433221 1 24578889999999999999 899
Q ss_pred EEEEEeeeeccCCCCCeEEEEEEEEE
Q 013560 355 FKSCVLYTELENPDQPLINIEVVAHV 380 (441)
Q Consensus 355 ~~a~Vv~tg~~~~~~~~~~VeV~~~v 380 (441)
++++++..+..+ .++.+.+...++|
T Consensus 108 ~e~~i~~~~~~~-~~~~~~~~~~~~v 132 (150)
T cd01287 108 YEVHIKEVGRDG-PRPYIIADASLWV 132 (150)
T ss_pred EEEEEEEEEccC-CccEEEEEEEEEE
Confidence 999999887421 1245666666665
No 136
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=81.60 E-value=21 Score=38.08 Aligned_cols=66 Identities=11% Similarity=0.187 Sum_probs=43.7
Q ss_pred eeEEEccCCCCCCEEEEEEEEEEE--cccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCce-eecccc
Q 013560 150 DKIALKKSISVDIDLKIVGAVIWV--GRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKA-APVNRL 222 (441)
Q Consensus 150 D~i~F~~Pi~~gd~l~i~~~V~~v--GrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp-~pVp~l 222 (441)
.++.|.+|+++||.|++.++|+.. ++--+.+.+++...+ ..++..+..+++.....--.| +.+|++
T Consensus 88 ~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq~-------G~~V~~g~~~~l~~~~~~~~~~~~~~~~ 156 (466)
T PRK08190 88 QSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQD-------GEVVITGTAEVIAPTEKVRRPRVVLPEV 156 (466)
T ss_pred EEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEeCC-------CCEEEEEEEEeecccccccccccccccc
Confidence 489999999999999999999876 333344444444333 467788888877655422222 235555
No 137
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=80.63 E-value=3.2 Score=40.01 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=53.0
Q ss_pred CcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCCCCEEEEEEEEEEEc
Q 013560 97 DDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISVDIDLKIVGAVIWVG 174 (441)
Q Consensus 97 d~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vG 174 (441)
+..+|.-+++..|||.+-+|+.|+-+..++-..++-. |+.+ .+.+.+|+.+|+.|++..++...|
T Consensus 156 ~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~-------p~r~------~l~y~keva~G~~iti~~e~~~~~ 220 (250)
T COG3884 156 DFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYG-------PLRL------TLEYVKEVAPGEKITIVYEVHPLE 220 (250)
T ss_pred cceeEEEeeccccccccceehHHHHHHHhhhhHhhcc-------ccee------EEEEEcccCCCCeEEEEEEEcccC
Confidence 4567889999999999999999999998866666543 3222 578999999999999999987655
No 138
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=76.82 E-value=37 Score=28.24 Aligned_cols=82 Identities=13% Similarity=0.005 Sum_probs=58.5
Q ss_pred ccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEe-eEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEccc
Q 013560 111 VRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVD-KIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTK 189 (441)
Q Consensus 111 v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD-~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~ 189 (441)
++-.-|....|......+.++.+.... .....+++| .|.|..|....+++-.+.+..+.|+.-.....+++..+
T Consensus 17 ~~~a~lA~~SD~~~l~~~~~~~~~~~~----~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~~- 91 (104)
T cd03444 17 LHAAALAYLSDSLLLGTALRPHGLPLF----DASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTRD- 91 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcc----cCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECCC-
Confidence 555666666676665555555443110 123556776 78999999889999999999999999999999999876
Q ss_pred cccCCCceEEEEEE
Q 013560 190 EVSDTSDSVVLTAN 203 (441)
Q Consensus 190 ~~~~~~~~~v~~a~ 203 (441)
+++++++.
T Consensus 92 ------G~LvAs~~ 99 (104)
T cd03444 92 ------GELVASVA 99 (104)
T ss_pred ------CCEEEEEE
Confidence 36666543
No 139
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=75.39 E-value=15 Score=31.42 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=25.8
Q ss_pred eEEEEEEeeEEEccCCCCCCEEEEEEEEEEEccc
Q 013560 143 LLVTASVDKIALKKSISVDIDLKIVGAVIWVGRS 176 (441)
Q Consensus 143 ~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrS 176 (441)
.++-++- ++.|.+|+++||.|++.++|..+-..
T Consensus 74 ~~vh~~~-~~~~h~Pl~~Gd~l~~~~~v~~v~~k 106 (132)
T PF13452_consen 74 RLVHGEQ-DIEFHRPLRPGDTLTATSRVTDVYDK 106 (132)
T ss_dssp GEEEEEE-EEEESS--BSSEEEEEEEEEEEEEEE
T ss_pred hEEecCc-EEEEeCCCCCCCEEEEEEEEEEEEEe
Confidence 5666665 79999999999999999999887544
No 140
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=69.93 E-value=58 Score=27.95 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=23.2
Q ss_pred eEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEE
Q 013560 151 KIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEV 184 (441)
Q Consensus 151 ~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v 184 (441)
++.|.+|+.+||.|+++..+ .|+ .+.+.+++
T Consensus 76 ~~rF~~PV~~gDtl~~~~~~--~~~-~v~~~~~~ 106 (122)
T cd03448 76 KVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKV 106 (122)
T ss_pred EEEEcCCccCCCEEEEEEEE--eCC-EEEEEEEE
Confidence 79999999999999998874 444 44444444
No 141
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=67.56 E-value=88 Score=27.58 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=27.9
Q ss_pred EEeeEEEccCCCCC-C----EEEEEEEEEEEc--ccEEEEEEEEEEc
Q 013560 148 SVDKIALKKSISVD-I----DLKIVGAVIWVG--RSSIEIQLEVIQS 187 (441)
Q Consensus 148 svD~i~F~~Pi~~g-d----~l~i~~~V~~vG--rSSmeV~v~v~~~ 187 (441)
+. ++.|.+|+.+| | .|++.+.|+.+- +...++.+.+.+.
T Consensus 82 ~~-~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~~ 127 (142)
T PRK13693 82 EY-NVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTG 127 (142)
T ss_pred EE-EEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEEC
Confidence 44 79999999864 3 899999999874 3355555555543
No 142
>COG5496 Predicted thioesterase [General function prediction only]
Probab=66.29 E-value=92 Score=27.37 Aligned_cols=102 Identities=8% Similarity=0.002 Sum_probs=67.9
Q ss_pred eEEEEEEeCCCCCCC-------CCCCcHHHHHHHHHHHHHHHHHhhcCCCcEEEEEc-eEEEcCccCcCcEEEEEEEEee
Q 013560 290 RLENALICQPQQRNI-------HGRIFGGFLMLRAFELAFSTAYAFAGLMPCFLEVD-HVDFLRPVDVGDFLRFKSCVLY 361 (441)
Q Consensus 290 ~~~~~~~v~P~~~N~-------~G~vfGG~lm~~ade~A~~~A~~~~~~~~vt~~vd-~i~F~~Pv~vGd~l~~~a~Vv~ 361 (441)
.++..+++.+.+.-. ++.+=-+++..++.+++.-++..|-.....++..+ ++.=++|+.+|+.|.+.+.+..
T Consensus 6 ~~e~~~lv~dn~t~~~~~~~~~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~ 85 (130)
T COG5496 6 TLEGEFLVRDNHTVPPAEGSGMLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEK 85 (130)
T ss_pred eeEEEEEecccccCchhHhCCccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEE
Confidence 455566666666552 33444689999999999999988866544444432 6677889999999999999998
Q ss_pred eeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEec
Q 013560 362 TELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSK 402 (441)
Q Consensus 362 tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d 402 (441)
..++ .+...+.|. + .......+++|=+.++
T Consensus 86 v~Gr-----~v~f~i~a~--~----~~~~Ig~g~h~R~iv~ 115 (130)
T COG5496 86 VEGR-----KVKFRIIAM--E----GGDKIGEGTHTRVIVP 115 (130)
T ss_pred Eecc-----EEEEEEEEe--e----CCcEEeeeEEEEEEec
Confidence 8775 233333332 2 1345666766665543
No 143
>PLN02864 enoyl-CoA hydratase
Probab=63.13 E-value=61 Score=32.68 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=42.2
Q ss_pred ceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEecc
Q 013560 339 DHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKA 403 (441)
Q Consensus 339 d~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~ 403 (441)
.+|.+.+|++.|+.|.++++|.....+ + .-.-+++...+.+... .+++.+...|+++...
T Consensus 99 q~i~~~rPlp~~~~l~~~~~v~~v~dk--G-~ga~v~~~~~~~d~~~--Ge~v~t~~st~~~Rg~ 158 (310)
T PLN02864 99 QYIEIYKPIPSSASVRNKVSIAGLHDK--G-KAAILELETLSYEKDS--GELLCMNRSTIFLRGA 158 (310)
T ss_pred ceEEEECCCCCCCEEEEEEEEEEEEeC--C-CcEEEEEEEEEEeCCC--CcEEEEEEEEEEEeCC
Confidence 489999999999999999999987432 1 1122445555455333 4577888889988854
No 144
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=61.65 E-value=52 Score=29.61 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=24.8
Q ss_pred EEEEeeEEEccCCCCCCEEEEEEEEEEE
Q 013560 146 TASVDKIALKKSISVDIDLKIVGAVIWV 173 (441)
Q Consensus 146 TasvD~i~F~~Pi~~gd~l~i~~~V~~v 173 (441)
-...|++.|.+|+.+||.|+.+..|...
T Consensus 95 ~~g~~~vRF~~PV~~Gdtl~~~~~v~~~ 122 (159)
T COG2030 95 NLGGDEVRFVKPVFPGDTLRARVEVLDK 122 (159)
T ss_pred eccccceEecCCCCCCCEEEEEEEEEEe
Confidence 3466899999999999999999999866
No 145
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=59.70 E-value=24 Score=39.53 Aligned_cols=51 Identities=8% Similarity=0.141 Sum_probs=35.6
Q ss_pred EEeeEEEccCCCCCCEEEEEEEEEEEccc------EEEEEEEEEEccccccCCCceEEEEEEEE
Q 013560 148 SVDKIALKKSISVDIDLKIVGAVIWVGRS------SIEIQLEVIQSTKEVSDTSDSVVLTANFI 205 (441)
Q Consensus 148 svD~i~F~~Pi~~gd~l~i~~~V~~vGrS------SmeV~v~v~~~~~~~~~~~~~~v~~a~ft 205 (441)
.++++.|.+|+++||.|++++.|..+-.+ -+.+.+.+...+ ...++++...
T Consensus 614 g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~-------G~~V~~~~~~ 670 (675)
T PRK11563 614 GLENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQD-------GELVATYDIL 670 (675)
T ss_pred ccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEECC-------CCEEEEEEEH
Confidence 45789999999999999999999977321 345555555332 3566665553
No 146
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=59.09 E-value=28 Score=39.00 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=34.9
Q ss_pred EeeEEEccCCCCCCEEEEEEEEEEEccc------EEEEEEEEEEccccccCCCceEEEEEEEE
Q 013560 149 VDKIALKKSISVDIDLKIVGAVIWVGRS------SIEIQLEVIQSTKEVSDTSDSVVLTANFI 205 (441)
Q Consensus 149 vD~i~F~~Pi~~gd~l~i~~~V~~vGrS------SmeV~v~v~~~~~~~~~~~~~~v~~a~ft 205 (441)
.+++.|++|+++||.|++++.|+.+-.+ -+.+.+.+...+ .+.++++...
T Consensus 603 ~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq~-------G~~Vl~~~~~ 658 (663)
T TIGR02278 603 LENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQN-------GEPVATYDVL 658 (663)
T ss_pred cceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcCC-------CCEEEEEEEH
Confidence 4689999999999999999999866311 345555555332 3566666553
No 147
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=57.18 E-value=1.6e+02 Score=27.02 Aligned_cols=89 Identities=13% Similarity=-0.073 Sum_probs=56.3
Q ss_pred eEEEEEEeCCCCCCCCC------CCcHHHHHHHHHHHHHHHHHhhcC-CCcEEEEEceEEEcCccCcCcEE-EEEEEEee
Q 013560 290 RLENALICQPQQRNIHG------RIFGGFLMLRAFELAFSTAYAFAG-LMPCFLEVDHVDFLRPVDVGDFL-RFKSCVLY 361 (441)
Q Consensus 290 ~~~~~~~v~P~~~N~~G------~vfGG~lm~~ade~A~~~A~~~~~-~~~vt~~vd~i~F~~Pv~vGd~l-~~~a~Vv~ 361 (441)
.+.....+.|++--..| .+-|=.++..|-.++++.+..... ...+.++++++.|.+||..||.+ +++.+++.
T Consensus 51 ~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~ 130 (169)
T TIGR01749 51 YVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYRIHFKR 130 (169)
T ss_pred EEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEEEEEEE
Confidence 67788888887753322 244445556666666655532222 23478889999999999999986 88888887
Q ss_pred eeccCCCCCeEEEEEEEEE
Q 013560 362 TELENPDQPLINIEVVAHV 380 (441)
Q Consensus 362 tg~~~~~~~~~~VeV~~~v 380 (441)
..... +........+.+
T Consensus 131 ~~~~~--~~~~~~~~~i~v 147 (169)
T TIGR01749 131 VINRR--LVMGIADGEVLV 147 (169)
T ss_pred EeecC--CcEEEEEEEEEE
Confidence 64321 123444554443
No 148
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=56.24 E-value=1.9e+02 Score=27.80 Aligned_cols=263 Identities=13% Similarity=0.065 Sum_probs=127.8
Q ss_pred EEEEcccCCcccCccccCCCCcccHhHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEEeeEEEccCCCC--CCEEEE
Q 013560 89 SILYNFSTDDILREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDDDSMTRPLLLVTASVDKIALKKSISV--DIDLKI 166 (441)
Q Consensus 89 ~~~~p~~sd~~lr~~~~N~~G~v~gG~lLe~lD~~A~~~a~rh~~~~~~~~~p~~~VTasvD~i~F~~Pi~~--gd~l~i 166 (441)
+..+-......++.+-.+..-.+=|..+++++-+++. ..... . ...+.++.|.+|+.+ +....+
T Consensus 19 ~~~l~~~~~~~l~dH~v~g~~i~Pga~~le~~~~Aa~-----~~~~~-------~--~~~l~~~~~~~pl~l~~~~~~~l 84 (295)
T PF14765_consen 19 ESRLSPDEHPFLRDHRVQGQPILPGAAYLEMALEAAR-----QLSPS-------S--VVELRDLRFHRPLVLDEGEPREL 84 (295)
T ss_dssp EEEECTTTTGGGGGEEETTEEEE-HHHHHHHHHHHHH-----HHTCS-------S--EEEEEEEEE-S-EEE-TTTEEEE
T ss_pred EEEECCccCchhhcCEECCEeeehhHHHHHHHHHHHH-----HhhCc-------c--cceEEEeEecccEEecCCCcEEE
Confidence 3344433444555443333333557778887755442 22221 2 345669999999853 578888
Q ss_pred EEEEEEE-ccc-EEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHH
Q 013560 167 VGAVIWV-GRS-SIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRLSPQTEREKSLFEEAEARSKLRK 244 (441)
Q Consensus 167 ~~~V~~v-GrS-SmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~l~p~t~~E~~l~~~a~~r~~~R~ 244 (441)
...+... +.+ ...+.++++....+ .+.+...++|.+.+..-+.....+..++.+ +.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~s~~~~--~~~~~~h~~g~v~~~~~~~~~~~~~~~~~l------------------~~~~ 144 (295)
T PF14765_consen 85 RVELDPEEDGSGSMEWRFEIFSRNKD--DSGWTLHASGQVSLDKDPPPEPPPLDLESL------------------KARC 144 (295)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEST--CCGEEEEEEEEEEEESSHC-SGGBGBHHHH------------------HHHH
T ss_pred EEEEEEccCCCCccceEEEEEEecCC--CcceEEeeeeEEEeeecccccccccccccc------------------cccc
Confidence 8888888 333 57778888776531 112466666666654321100011111111 0111
Q ss_pred HHhcCCCCCCCchhHHHHHHHHHhcccccCCCCcccCCceeecCCeEEEEEEeCCCCC-CCCCCCcHHHHHHHHHHHHHH
Q 013560 245 RKTGGDRRELDNGEVNRLEALLAEGRVICDMPALADRNSILLRDTRLENALICQPQQR-NIHGRIFGGFLMLRAFELAFS 323 (441)
Q Consensus 245 ~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~p~~~~~~~v~~~dt~~~~~~~v~P~~~-N~~G~vfGG~lm~~ade~A~~ 323 (441)
. ... ....-+.+.+|+.+.+.-. .--|.+..-..++. ........+.+... +..+..+=..||--+..+++.
T Consensus 145 ~-~~~---~~~~~~~~~~Y~~~~~~gl-~~g~~fr~i~~i~~--~~~~~~~~~~~~~~~~~~~~~l~P~llD~~lq~~~~ 217 (295)
T PF14765_consen 145 P-EPP---DGEPLDIEEFYERLAERGL-FYGPRFRGIESIRR--GEALAEVRLPDDPASDPDPFVLHPALLDAALQAAGL 217 (295)
T ss_dssp H-EEC---CCEEEHHHHHHHHHHHTTE-EEHGGGHHEEEEEE--SEEEEEEECGTTTGGGGGGSSS-HHHHHHHHHGHGC
T ss_pred c-ccc---cccccchHHHHHhHHhcCC-ccCCcccchhhhhh--ccceEEEEEEeeccCCCCceeECHHHHHHHHHHHHH
Confidence 1 000 0001124456666643322 11133322334555 44555544443322 222344334455444443322
Q ss_pred HHH--hhcCCCcEEEEEceEEEcC-ccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEE
Q 013560 324 TAY--AFAGLMPCFLEVDHVDFLR-PVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTV 400 (441)
Q Consensus 324 ~A~--~~~~~~~vt~~vd~i~F~~-Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~ 400 (441)
+.. .-.+...+-.+++.+.|.+ |.+.|+.+.+.++....+.. .+...+.+.|.+ | .-+.-.--++|..
T Consensus 218 ~~~~~~~~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~dv~v~d~~-G-~~~~~~~gl~~~~ 288 (295)
T PF14765_consen 218 ALWEDDDRGRVFLPVSIERIRIFRAPPPPGDRLYVYARLVKSDDD-------TITGDVTVFDED-G-RVVAELEGLTFRR 288 (295)
T ss_dssp CHTSTTTTTSEEEEEEEEEEEESSS--SSTSEEEEEEEEESTTTT-------EEEEEEEEEETT-S-BEEEEEEEEEEEE
T ss_pred HhccccCCCCEEcccEeCEEEEEeccCCCCCEEEEEEEEecccce-------EEEEEEEEECCC-C-CEEEEEccEEEEE
Confidence 111 1123467889999999994 88889999988888544432 355666667742 2 2344444566655
Q ss_pred e
Q 013560 401 S 401 (441)
Q Consensus 401 ~ 401 (441)
+
T Consensus 289 ~ 289 (295)
T PF14765_consen 289 V 289 (295)
T ss_dssp E
T ss_pred C
Confidence 4
No 149
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=46.40 E-value=2.4e+02 Score=25.91 Aligned_cols=89 Identities=12% Similarity=-0.066 Sum_probs=57.3
Q ss_pred eEEEEEEeCCCCCCCCCC------CcHHHHHHHHHHHHHHHHHhhcC-CCcEEEEEceEEEcCccCcCcE-EEEEEEEee
Q 013560 290 RLENALICQPQQRNIHGR------IFGGFLMLRAFELAFSTAYAFAG-LMPCFLEVDHVDFLRPVDVGDF-LRFKSCVLY 361 (441)
Q Consensus 290 ~~~~~~~v~P~~~N~~G~------vfGG~lm~~ade~A~~~A~~~~~-~~~vt~~vd~i~F~~Pv~vGd~-l~~~a~Vv~ 361 (441)
.+.....+.|++--..|. +-|=.++..|-.++++.+..... ...+++++++..|.++|..||. ++++..|+.
T Consensus 54 ~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~ 133 (172)
T PRK05174 54 YIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKR 133 (172)
T ss_pred EEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEEEEEE
Confidence 588888888887533332 33445556666666555532221 1347788999999999999998 899999988
Q ss_pred eeccCCCCCeEEEEEEEEE
Q 013560 362 TELENPDQPLINIEVVAHV 380 (441)
Q Consensus 362 tg~~~~~~~~~~VeV~~~v 380 (441)
..... +......+.+.+
T Consensus 134 ~~~~~--~~~~~~~~~i~v 150 (172)
T PRK05174 134 VINRK--LVMGIADGRVLV 150 (172)
T ss_pred EecCC--CCEEEEEEEEEE
Confidence 75421 134445555543
No 150
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.06 E-value=45 Score=25.98 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=35.9
Q ss_pred cccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeCCCCceeeccccCCCCHHHHHHHHHH
Q 013560 174 GRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDSKTGKAAPVNRLSPQTEREKSLFEEA 236 (441)
Q Consensus 174 GrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~~~~kp~pVp~l~p~t~~E~~l~~~a 236 (441)
|..|-|..++-... ..+++..+.|+..|+ +||++|+-.|..=+..-++-|..+
T Consensus 7 g~~~~ea~iryldg-------df~vv~~GsfV~CAV---tgk~IPldeLrYWSvarQEaYv~~ 59 (77)
T COG3908 7 GPGSREAVIRYLDG-------DFQVVSPGSFVLCAV---TGKPIPLDELRYWSVARQEAYVDA 59 (77)
T ss_pred CCCCceeEEEEecC-------ceEEEcCCcEEEEEe---cCCcccHHHhhhcchhhhhccccH
Confidence 44455555554433 368899999999997 689999988876665555545433
No 151
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=34.30 E-value=4.3e+02 Score=25.36 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=48.5
Q ss_pred eEEEEEEeeEEEcc-CCCCCCEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEeeC
Q 013560 143 LLVTASVDKIALKK-SISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARDS 211 (441)
Q Consensus 143 ~~VTasvD~i~F~~-Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D~ 211 (441)
.++-.+++++.|.+ +...++.+.+.++....+...+...+.++.++. ..++---.++|..++.
T Consensus 228 ~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~v~d~~G------~~~~~~~gl~~~~~~~ 291 (295)
T PF14765_consen 228 VFLPVSIERIRIFRAPPPPGDRLYVYARLVKSDDDTITGDVTVFDEDG------RVVAELEGLTFRRVPS 291 (295)
T ss_dssp EEEEEEEEEEEESSS--SSTSEEEEEEEEESTTTTEEEEEEEEEETTS------BEEEEEEEEEEEEEEH
T ss_pred EEcccEeCEEEEEeccCCCCCEEEEEEEEecccceEEEEEEEEECCCC------CEEEEEccEEEEECCc
Confidence 67778999999994 888999999999998778889999999998652 3445556677766653
No 152
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=33.42 E-value=2.1e+02 Score=21.61 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=41.2
Q ss_pred eEEEEEEeeEEEccCCCCCCEEEEEEEEEEEcccEEEEEEEEEEccccccCCCceEEEEEEEEEEEee
Q 013560 143 LLVTASVDKIALKKSISVDIDLKIVGAVIWVGRSSIEIQLEVIQSTKEVSDTSDSVVLTANFIFVARD 210 (441)
Q Consensus 143 ~~VTasvD~i~F~~Pi~~gd~l~i~~~V~~vGrSSmeV~v~v~~~~~~~~~~~~~~v~~a~ft~Va~D 210 (441)
+.|.+++..+++.. +..+.+...+..+.++++.+.+..+.. ..+..+.+.++|.+
T Consensus 17 P~V~~~i~~~d~~~----~~~~~~~~~v~~Vt~~gF~i~~~~~~~---------~~~~~~~v~wlA~~ 71 (72)
T PF09458_consen 17 PQVIVSINGLDFDS----SQNIRFQVQVSNVTTTGFTIQIQTWSD---------SQIYSLKVSWLAID 71 (72)
T ss_dssp -EEEEEEEEEEE-B----TTEEEEEEEEESEESSEEEEEEEE-TT----------EEEEEEEEEEEEE
T ss_pred CEEEEEEEEEEcCC----CCceeEEEEEEEECcCCEEEEEEecCC---------CEEEEEEEEEEEEe
Confidence 46777777777543 578899999999999999998887643 35677888888876
No 153
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=33.24 E-value=2.8e+02 Score=22.89 Aligned_cols=77 Identities=18% Similarity=0.155 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCC----cEEEEEc-eEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEee
Q 013560 308 IFGGFLMLRAFELAFSTAYAFAGLM----PCFLEVD-HVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTR 382 (441)
Q Consensus 308 vfGG~lm~~ade~A~~~A~~~~~~~----~vt~~vd-~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~ 382 (441)
+|-..|....|-.....+.+..+.. ...+++| .|.|..|....+.+.++.+..+.+.. + .....++.+
T Consensus 17 ~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~g-----r--~~~~~~l~~ 89 (104)
T cd03444 17 LHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNG-----R--GLVEGRIFT 89 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCC-----e--eEEEEEEEC
Confidence 4555666666655555555544432 3567787 88999999988999888888887763 2 334455556
Q ss_pred CCCcceeEEEEE
Q 013560 383 PEFRSSEVSNTF 394 (441)
Q Consensus 383 ~~~~~~~~~n~~ 394 (441)
. ++++++++
T Consensus 90 ~---~G~LvAs~ 98 (104)
T cd03444 90 R---DGELVASV 98 (104)
T ss_pred C---CCCEEEEE
Confidence 5 24555554
No 154
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=27.69 E-value=3.8e+02 Score=22.79 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=61.2
Q ss_pred CCeEEEEEEeCCCCCCC----CCCCcHHHHHHHHHHHHHHHHHhhcC----CCcEEEEEceEEEcCccCcCcEEEEEEEE
Q 013560 288 DTRLENALICQPQQRNI----HGRIFGGFLMLRAFELAFSTAYAFAG----LMPCFLEVDHVDFLRPVDVGDFLRFKSCV 359 (441)
Q Consensus 288 dt~~~~~~~v~P~~~N~----~G~vfGG~lm~~ade~A~~~A~~~~~----~~~vt~~vd~i~F~~Pv~vGd~l~~~a~V 359 (441)
+........+-..|.-. .+.+-|=.|+.-+-.++...+..+.+ ...+..++ +++|..++....-+.++..+
T Consensus 19 ~~~~~~~~~~p~~h~~~~dh~~dh~~gmll~Ea~RQa~~~~~h~~~~vp~~~~~~~~~l-~~~f~~~~e~~~P~~~~~~~ 97 (132)
T PF03756_consen 19 DGRFRARLQWPRSHPFFFDHPGDHVPGMLLLEAARQAGIALAHRFYGVPLDHQFVLTSL-DFTFSRFAELDVPADLTVRI 97 (132)
T ss_pred CCEEEEEEEcCCCCccccCCCCCccChHHHHHHHHHHHHHhhccccCCCCCceEEEEEE-EEEEccccccCCCEEEEEEE
Confidence 34444444444433332 23455666666666666666666543 33466666 78999998877777777777
Q ss_pred eeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEE
Q 013560 360 LYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTV 400 (441)
Q Consensus 360 v~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~ 400 (441)
.-......+...+.+.|.+ .. .++.++++.++|.|
T Consensus 98 ~~~~~~~~~~~~~~~~v~~--~q----~g~~~a~~~~~~tc 132 (132)
T PF03756_consen 98 TCRDRRGGRPRGLRFRVTV--SQ----GGRVVATASMTFTC 132 (132)
T ss_pred EeccccCCccceEEEEEEE--EE----CCEEEEEEEEEEEC
Confidence 6554431122233444443 33 24678888888754
No 155
>TIGR02728 spore_gerQ spore coat protein GerQ. Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=24.98 E-value=2.8e+02 Score=22.24 Aligned_cols=62 Identities=6% Similarity=0.074 Sum_probs=49.6
Q ss_pred hhcCCCcEEEEEceEEEcCccCcCcEEEEEEEEeeeeccCCCCCeEEEEEEEEEeeCCCcceeEEEEEEEEEEEecc
Q 013560 327 AFAGLMPCFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENPDQPLINIEVVAHVTRPEFRSSEVSNTFYFTFTVSKA 403 (441)
Q Consensus 327 ~~~~~~~vt~~vd~i~F~~Pv~vGd~l~~~a~Vv~tg~~~~~~~~~~VeV~~~v~~~~~~~~~~~n~~~fTfv~~d~ 403 (441)
|...+...|..+ +|-...+-++.+ +.+.|.-+|+.+ +-+.+|.++.+-+.-.-|+-|+.-|+
T Consensus 13 RlN~GK~~T~y~---Tfenn~ew~akv-f~G~iE~AGRDh-----------iiisdp~tg~RyLl~mvyldyvtFde 74 (82)
T TIGR02728 13 RMNRGKTATVYM---TFENSPEWAARV-FRGQIENAGRDH-----------IVISDPQSGMRYLLLMVYLDYLTFDE 74 (82)
T ss_pred HhcCCceEEEEE---EEcCChHhhhhh-eeeehhhcCcce-----------EEEcCCCCCcEEEeeEeeeeeEEecc
Confidence 566788888886 899988888866 789999999862 22359999999888888888888765
Done!