BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013561
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 11/163 (6%)
Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
+KP V++LG+GWGA FLK IDTK Y+ ISPR++ +FTPLL S VGT++ +S+ EP+
Sbjct: 41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPI 100
Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEP------HQ---FKVAY 218
+ +L N +Y A I+ D++ V ++++ ++P HQ ++ Y
Sbjct: 101 --VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKY 158
Query: 219 DKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL 261
D L+ A GAEP TFGI GV + +FL+E+ ++ EIR+ NL
Sbjct: 159 DYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANL 201
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDG 352
+ V+++L+ ++FA+GD A LP AQVA ++ +YLA+ F+K +
Sbjct: 353 LAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQVAHQEAEYLAKNFDKMAQIPNF 405
Query: 353 GKALSAK--------DINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSW 404
K LS++ + N PF Y LG++A +G +A+ +R K + G +++
Sbjct: 406 QKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGK-RTFYTGGGLMTF 464
Query: 405 LIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRD 437
+WR YL+ +LS R+R V +W F RD
Sbjct: 465 YLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 497
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 11/163 (6%)
Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
+KP V++LG+GWGA FLK IDTK Y+ ISPR++ +FTPLL S VGT++ +S+ EP+
Sbjct: 10 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPI 69
Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEP------HQ---FKVAY 218
+ +L N +Y A I+ D++ V ++++ ++P HQ ++ Y
Sbjct: 70 --VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKY 127
Query: 219 DKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL 261
D L+ A GAEP TFGI GV + +FL+E+ ++ EIR+ NL
Sbjct: 128 DYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANL 170
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDG 352
+ V+++L+ ++FA+GD A LP AQVA ++ +YLA+ F+K +
Sbjct: 322 LAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQVAHQEAEYLAKNFDKMAQIPNF 374
Query: 353 GKALSAK--------DINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSW 404
K LS++ + N PF Y LG++A +G +A+ +R K + G +++
Sbjct: 375 QKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGK-RTFYTGGGLMTF 433
Query: 405 LIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRD 437
+WR YL+ +LS R+R V +W F RD
Sbjct: 434 YLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 466
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 138 ISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEV 197
IS R + FTP +G +F ++ P++ + N F ID D + V
Sbjct: 33 ISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKF----NIEFINEKAESIDPDANTV 88
Query: 198 YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
T +GK K+ YD LVIA G + L FG +G +EN+ + HA E +KKL
Sbjct: 89 ---TTQSGK--------KIEYDYLVIATGPK-LVFGAEGQEENSTSICTAEHALETQKKL 136
Query: 258 LLNLMLSENPGDTV 271
L NPG V
Sbjct: 137 ---QELYANPGPVV 147
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 138 ISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEV 197
IS R + FTP +G +F ++ P++ + N F ID D + V
Sbjct: 33 ISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKF----NIEFINEKAESIDPDANTV 88
Query: 198 YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
T +GK K+ YD LVIA G + L FG +G +EN+ + HA E +KKL
Sbjct: 89 ---TTQSGK--------KIEYDYLVIATGPK-LVFGAEGQEENSTSICTAEHALETQKKL 136
Query: 258 LLNLMLSENPGDTV 271
L NPG V
Sbjct: 137 ---QELYANPGPVV 147
>pdb|1N1F|A Chain A, Crystal Structure Of Human Interleukin-19
Length = 159
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 160 FRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYC--ETVNNGKLSHEPHQFKVA 217
F+ EP +I +SS NS+ Y+ + ++ + +C E N ++ H+
Sbjct: 72 FKDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHD------N 125
Query: 218 YDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI 253
YD+L + A A IK + E FL +N E+
Sbjct: 126 YDQLEVHAAA------IKSLGELDVFLAWINKNHEV 155
>pdb|1CP9|B Chain B, Crystal Structure Of Penicillin G Acylase From The Bro1
Mutant Strain Of Providencia Rettgeri
Length = 553
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 28/137 (20%)
Query: 119 WGACRFLKGIDTKI--YDAVCISPR------------NHMVFTPLLASTCVGTLEFRSVA 164
WG+ +K ID +I YD + NH +FTP L G +
Sbjct: 258 WGSADRVKEIDNRIEAYDKLTADDMWAILQQTSRVDLNHRLFTPFLTQATQGLPSNDNSV 317
Query: 165 EPVSRIQ-----TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYD 219
+ VS +Q LSSD Y + S I +D E+ T+ G+ P +D
Sbjct: 318 KLVSMLQQWDGINQLSSDGKHYIHPGSAI-LDIWLKEMLKATL--GQTVPAP------FD 368
Query: 220 KLVIAAGAEPLTFGIKG 236
K +A+G E G G
Sbjct: 369 KWYLASGYETTQEGPTG 385
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 218 YDKLVIAAGAEP----LTFGIKGVKENAYFLREVNHAQEIRKKLLLN 260
YD+LV+A G P + G G N +LR + A+ IR++L+ +
Sbjct: 103 YDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIAD 149
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 218 YDKLVIAAGAEP----LTFGIKGVKENAYFLREVNHAQEIRKKLLLN 260
YD+LV+A G P + G G N +LR + A+ IR++L+ +
Sbjct: 102 YDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIAD 148
>pdb|4EQ5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sibiricus
Length = 571
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 271 VQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQ 330
V+L + +++T F+ +++++ DE L + Q GKP+ P LAQ
Sbjct: 195 VELVERAYMLTSDFGFVAKVAKLEGDEGLAKVKI--------------QVGKPIKPMLAQ 240
Query: 331 VAERQGKYLAEL 342
+A + L E+
Sbjct: 241 MAANVREALVEM 252
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 14/150 (9%)
Query: 111 RVVVLGTGWGA---CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
+V+VLG +GA LK + D I+ F P L +G R V E
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGV---RDVDELK 59
Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227
+ +L + F + ID VY T +G ++ E YD +++ GA
Sbjct: 60 VDLSEALP-EKGIQFQEGTVEKIDAKSSMVYY-TKPDGSMAEE------EYDYVIVGIGA 111
Query: 228 EPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
T +KG + Y + E A ++R+KL
Sbjct: 112 HLATELVKGWDKYGYSVCEPEFATKLREKL 141
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 359 KDINLGDPFVYKHLGSMATVGRYK----ALVDLRQSKDEKGISLAGFLSW 404
K IN+ +PFV+KH+ ++ ++ + ++V + G+S F SW
Sbjct: 295 KQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESW 344
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-EN 240
F I +H+V + + +G+ E YDKL+I+ GA P I G +N
Sbjct: 74 FSNTEITAIQPKEHQVTVKDLVSGEERVE------NYDKLIISPGAVPFELDIPGKDLDN 127
Query: 241 AYFLREVNHAQEIRKK 256
Y +R A ++++K
Sbjct: 128 IYLMRGRQWAIKLKQK 143
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-EN 240
F I +H+V + + +G+ E YDKL+I+ GA P I G +N
Sbjct: 74 FSNTEITAIQPKEHQVTVKDLVSGEERVE------NYDKLIISPGAVPFELDIPGKDLDN 127
Query: 241 AYFLREVNHAQEIRKK 256
Y +R A ++++K
Sbjct: 128 IYLMRGRQWAIKLKQK 143
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-EN 240
F I +H+V + + +G+ E YDKL+I+ GA P I G +N
Sbjct: 74 FSNTEITAIQPKEHQVTVKDLVSGEERVE------NYDKLIISPGAVPFELDIPGKDLDN 127
Query: 241 AYFLREVNHAQEIRKK 256
Y +R A ++++K
Sbjct: 128 IYLMRGRQWAIKLKQK 143
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-EN 240
F I +H+V + + +G+ E YDKL+I+ GA P I G +N
Sbjct: 74 FSNTEITAIQPKEHQVTVKDLVSGEERVE------NYDKLIISPGAVPFELDIPGKDLDN 127
Query: 241 AYFLREVNHAQEIRKK 256
Y +R A ++++K
Sbjct: 128 IYLMRGRQWAIKLKQK 143
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-EN 240
F I +H+V + + +G+ E YDKL+I+ GA P I G +N
Sbjct: 74 FSNTEITAIQPKEHQVTVKDLVSGEERVE------NYDKLIISPGAVPFELDIPGKDLDN 127
Query: 241 AYFLREVNHAQEIRKK 256
Y +R A ++++K
Sbjct: 128 IYLMRGRQWAIKLKQK 143
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-EN 240
F I +H+V + + +G+ E YDKL+I+ GA P I G +N
Sbjct: 74 FSNTEITAIQPKEHQVTVKDLVSGEERVE------NYDKLIISPGAVPFELDIPGKDLDN 127
Query: 241 AYFLREVNHAQEIRKK 256
Y +R A ++++K
Sbjct: 128 IYLMRGRQWAIKLKQK 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,121,260
Number of Sequences: 62578
Number of extensions: 475434
Number of successful extensions: 1199
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1181
Number of HSP's gapped (non-prelim): 27
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)