BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013561
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWA1|NDA1_ARATH Alternative NAD(P)H dehydrogenase 1, mitochondrial OS=Arabidopsis
thaliana GN=NDA1 PE=2 SV=1
Length = 510
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 136/230 (59%), Positives = 164/230 (71%), Gaps = 12/230 (5%)
Query: 39 SPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSY 98
S S+ NV RN P S +++ + + + T Q E +V E + Y
Sbjct: 15 SSSVGNVFRN------PESYTLSSRFCTALQKQQVTDTVQAK--EDVVNALEPQ----RY 62
Query: 99 PGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTL 158
GL TK GEKPRV+VLG+GW CR LKGIDT IYD VC+SPRNHMVFTPLLASTCVGTL
Sbjct: 63 DGLAPTKEGEKPRVLVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVGTL 122
Query: 159 EFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAY 218
EFRSVAEP+SRIQ ++S +P SY++LA+C +D D HEV+CETV G + +P +FK+AY
Sbjct: 123 EFRSVAEPISRIQPAISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKIAY 182
Query: 219 DKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
DKLV+A GAE TFGI GV ENA FLREV+HAQEIR+KLLLNLMLSE PG
Sbjct: 183 DKLVLACGAEASTFGINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPG 232
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 116/150 (77%), Positives = 136/150 (90%), Gaps = 1/150 (0%)
Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQD 351
+IG+DEW+R PSV+DVFA+GDC+G+LE TGK LPALAQVAER+GKYLA LFN +G+
Sbjct: 362 RIGIDEWMRVPSVQDVFAIGDCSGYLESTGKSTLPALAQVAEREGKYLANLFNV-MGKAG 420
Query: 352 GGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAY 411
GG+A SAK++ LG+PFVYKHLGSMAT+GRYKALVDLR+SK+ KGIS+AGFLSW IWRSAY
Sbjct: 421 GGRANSAKEMELGEPFVYKHLGSMATIGRYKALVDLRESKEGKGISMAGFLSWFIWRSAY 480
Query: 412 LTRVLSWRNRFYVAVNWATTFVFGRDISRI 441
LTRV+SWRNRFYVA+NW TTFVFGRDISRI
Sbjct: 481 LTRVVSWRNRFYVAINWLTTFVFGRDISRI 510
>sp|O80874|NDA2_ARATH Alternative NAD(P)H dehydrogenase 2, mitochondrial OS=Arabidopsis
thaliana GN=NDA2 PE=1 SV=1
Length = 508
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 120/171 (70%), Positives = 144/171 (84%)
Query: 98 YPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGT 157
Y GL T+ GEKPRVVVLG+GW CR +KGIDT +YD VC+SPRNHMVFTPLLASTCVGT
Sbjct: 60 YSGLPPTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGT 119
Query: 158 LEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVA 217
LEFRSVAEP+SRIQ ++S +P S+F+LA+C +D D HEV+CET+ +G + +P +FK+A
Sbjct: 120 LEFRSVAEPISRIQPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTLKPWKFKIA 179
Query: 218 YDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
YDKLVIA+GAE TFGI GV ENA FLREV+HAQEIR+KLLLNLMLS+ PG
Sbjct: 180 YDKLVIASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPG 230
Score = 255 bits (651), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 117/150 (78%), Positives = 135/150 (90%), Gaps = 1/150 (0%)
Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQD 351
+IG+DEW+R PSV+DVFA+GDC+G+LE TGKP LPALAQVAER+GKYLA L N IG+ +
Sbjct: 360 RIGIDEWMRVPSVQDVFAIGDCSGYLETTGKPTLPALAQVAEREGKYLANLLNA-IGKGN 418
Query: 352 GGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAY 411
GG+A SAK+I LG PFVYKHLGSMAT+GRYKALVDLR+SKD KGIS+ GF+SW IWRSAY
Sbjct: 419 GGRANSAKEIELGVPFVYKHLGSMATIGRYKALVDLRESKDAKGISMTGFVSWFIWRSAY 478
Query: 412 LTRVLSWRNRFYVAVNWATTFVFGRDISRI 441
LTRV+SWRNRFYVA+NW TTFVFGRDISRI
Sbjct: 479 LTRVISWRNRFYVAINWFTTFVFGRDISRI 508
>sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum
GN=DDB_G0270104 PE=3 SV=2
Length = 451
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 100/152 (65%), Gaps = 11/152 (7%)
Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
E ++++LG GWG+ FLK +++ YD ISPRNH +FTPLL S+ VGTLEFRS+AEPV
Sbjct: 38 ENEKLIILGCGWGSYSFLKNLNSIKYDITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPV 97
Query: 168 SRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG 226
+ D N + Y+ AS I+ + + V ++ H F++ YDKLVI G
Sbjct: 98 -----RTTRDINEFKYIQASVTSINPENNSVLVKST-----FHNEKPFEMKYDKLVIGVG 147
Query: 227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
+ TFGIKGV+ENA FL+E++HA+EIR+K++
Sbjct: 148 SRNNTFGIKGVEENANFLKELHHAREIRQKII 179
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 75/148 (50%), Gaps = 20/148 (13%)
Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQD 351
+I VD+ LR + +VF+ GDCA + P AQVA + YLA+ FN
Sbjct: 322 RIIVDDHLRVKNYSNVFSFGDCANVENKN----YPPTAQVASQSAVYLAKEFNN------ 371
Query: 352 GGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAY 411
L + N PF +K LG +A G+ ++ L+GF+ ++ WRSAY
Sbjct: 372 ----LEKLNPNPPKPFAFKFLGLLAYTGKKSGILQ------TDFFDLSGFIGFITWRSAY 421
Query: 412 LTRVLSWRNRFYVAVNWATTFVFGRDIS 439
LTR+ S R++ V +W T +FGRDIS
Sbjct: 422 LTRLGSLRSKIQVPFDWMRTLIFGRDIS 449
>sp|Q94BV7|NDB2_ARATH NAD(P)H dehydrogenase B2, mitochondrial OS=Arabidopsis thaliana
GN=NDB2 PE=1 SV=1
Length = 582
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 90/151 (59%), Gaps = 4/151 (2%)
Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
+K +VV+LGTGW FLK ++ Y+ ISPRN+ FTPLL S GT+E RSV EP+
Sbjct: 57 KKKKVVLLGTGWAGTSFLKNLNNSQYEVQIISPRNYFAFTPLLPSVTCGTVEARSVVEPI 116
Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227
I + ++ + A C ID +VYC + G S+ +F V YD LVIA GA
Sbjct: 117 RNIG---RKNVDTSYLEAECFKIDPASKKVYCRS-KQGLSSNGKKEFSVDYDYLVIATGA 172
Query: 228 EPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
+ TF I GV+EN +FL+EV AQ IRK ++
Sbjct: 173 QSNTFNIPGVEENCHFLKEVEDAQRIRKTVI 203
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 325 LPALAQVAERQGKYLAELFNKKI---GEQDGGKALSAKDINLGDPFVYKHLGSMATVGRY 381
LPA AQVA +QG YLA+ F++ +G + + + PF Y+HLG A +G
Sbjct: 468 LPATAQVAAQQGAYLAKCFDRMEECEKSPEGPIRMRGEGRHRFRPFRYRHLGQFAPLGGE 527
Query: 382 KALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI 441
+ L +S+ WL W S Y ++ +SWR R V +W F+FGRD S I
Sbjct: 528 QTAAQLPGD----WVSIGHSSQWL-WYSVYASKQVSWRTRVLVVSDWMRRFIFGRDSSSI 582
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 293 IGVDEWLRAPSVEDVFALGDCA 314
+ DEWLR ++++ALGDCA
Sbjct: 352 LATDEWLRVEGTDNIYALGDCA 373
>sp|F4JJJ3|NDB3_ARATH NAD(P)H dehydrogenase B3, mitochondrial OS=Arabidopsis thaliana
GN=NDB3 PE=2 SV=1
Length = 580
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVS 168
K +VV+LGTGW FLK ++ Y+ ISPRN+ FTPLL S GT+E RSV EP+
Sbjct: 55 KRKVVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFAFTPLLPSVTCGTVEARSVVEPIR 114
Query: 169 RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE 228
I + + F A C ID +VYC + G S +F V YD LVIA GA+
Sbjct: 115 NI--ARKQNVEMSFLEAECFKIDPGSKKVYCRS-KQGVNSKGKKEFDVDYDYLVIATGAQ 171
Query: 229 PLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
TF I GV+EN +FL+EV AQ IR ++ + + PG
Sbjct: 172 SNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKASLPG 211
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 324 VLPALAQVAERQGKYLAELFNK-KIGEQ--DGGKALSAKDINLGDPFVYKHLGSMATVGR 380
+LPA QVA +QG YLA+ F++ ++ E+ +G + + + PF Y+HLG A +G
Sbjct: 465 LLPATGQVAAQQGTYLAKCFDRMEVCEKNPEGPIRIRGEGRHRFRPFRYRHLGQFAPLGG 524
Query: 381 YKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISR 440
+ L +S+ WL W S Y ++ +SWR R V +W F+FGRD SR
Sbjct: 525 EQTAAQLPGD----WVSIGHSSQWL-WYSVYASKQVSWRTRVLVVSDWMRRFIFGRDSSR 579
Query: 441 I 441
I
Sbjct: 580 I 580
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQ 335
+ DEWLR ++++ALGDCA ++ + A+ + A+++
Sbjct: 350 LATDEWLRVEGCDNIYALGDCATINQRKVMEDIAAIFKKADKE 392
>sp|P32340|NDI1_YEAST Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NDI1 PE=1 SV=1
Length = 513
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 11/163 (6%)
Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
+KP V++LG+GWGA FLK IDTK Y+ ISPR++ +FTPLL S VGT++ +S+ EP+
Sbjct: 52 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPI 111
Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEP------HQ---FKVAY 218
+ +L N +Y A I+ D++ V ++++ ++P HQ ++ Y
Sbjct: 112 --VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKY 169
Query: 219 DKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL 261
D L+ A GAEP TFGI GV + +FL+E+ ++ EIR+ NL
Sbjct: 170 DYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANL 212
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDG 352
+ V+++L+ ++FA+GD A LP AQVA ++ +YLA+ F+K +
Sbjct: 364 LAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQVAHQEAEYLAKNFDKMAQIPNF 416
Query: 353 GKALSAK--------DINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSW 404
K LS++ + N PF Y LG++A +G +A+ +R K + G +++
Sbjct: 417 QKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGK-RTFYTGGGLMTF 475
Query: 405 LIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRD 437
+WR YL+ +LS R+R V +W F RD
Sbjct: 476 YLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 508
>sp|P40215|NDH1_YEAST External NADH-ubiquinone oxidoreductase 1, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NDE1 PE=1 SV=1
Length = 560
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 6/151 (3%)
Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
++ +V+LG+GWG+ LK +DT +Y+ V +SPRN+ +FTPLL ST VGT+E +S+ EPV
Sbjct: 111 KRKTLVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLFTPLLPSTPVGTIELKSIVEPV 170
Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227
I + S ++Y A +D + + ++ + + + YD LV+ GA
Sbjct: 171 RTI--ARRSHGEVHYYEAEAYDVDPENKTIKVKS----SAKNNDYDLDLKYDYLVVGVGA 224
Query: 228 EPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
+P TFG GV E + FL+E++ AQEIR K++
Sbjct: 225 QPNTFGTPGVYEYSSFLKEISDAQEIRLKIM 255
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 77/148 (52%), Gaps = 23/148 (15%)
Query: 307 VFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG-EQDGGKALSAKD----- 360
+FA+GDC T P L AQVA ++G+YLA+ F K +Q K AKD
Sbjct: 420 IFAIGDC------TFHPGLFPTAQVAHQEGEYLAQYFKKAYKIDQLNWKMTHAKDDSEVA 473
Query: 361 ---------INLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAY 411
+ + F Y H G++A +G KA+ DL + E LAG ++L W+SAY
Sbjct: 474 RLKNQIVKTQSQIEDFKYNHKGALAYIGSDKAIADL--AVGEAKYRLAGSFTFLFWKSAY 531
Query: 412 LTRVLSWRNRFYVAVNWATTFVFGRDIS 439
L LS+RNR VA++WA + GRD S
Sbjct: 532 LAMCLSFRNRVLVAMDWAKVYFLGRDSS 559
>sp|Q1JPL4|NDB1_ARATH NAD(P)H dehydrogenase B1, mitochondrial OS=Arabidopsis thaliana
GN=NDB1 PE=1 SV=1
Length = 571
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 130/262 (49%), Gaps = 23/262 (8%)
Query: 112 VVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQ 171
VVVLGTGW FLK +D YD +SP+N+ FTPLL S GT+E RS+ E V I
Sbjct: 52 VVVLGTGWAGISFLKDLDITSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIVESVRNIT 111
Query: 172 TSLSSDPNSYFYLASCIGIDTDKHEVYCETV--NNGKLSHEPHQFKVAYDKLVIAAGAEP 229
+ + + A C ID +V+C V ++ + S E F + YD L++A GA+
Sbjct: 112 KKKNGEIE--LWEADCFKIDHVNQKVHCRPVFKDDPEASQE---FSLGYDYLIVAVGAQV 166
Query: 230 LTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK--YFVIT----IT 283
TFG GV EN +FL+EV AQ IR+ ++ + PG T + + +FVI
Sbjct: 167 NTFGTPGVLENCHFLKEVEDAQRIRRGVIDCFEKAILPGLTEEQRRRKLHFVIVGGGPTG 226
Query: 284 LSFLVRLSQIGVDEWLRA-PSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAEL 342
+ F L +++ + PSV+++ + L Q+G +L ER + +
Sbjct: 227 VEFAAELHDFIIEDITKIYPSVKELVKIT-----LIQSGDHILNTF---DERISSFAEQK 278
Query: 343 FNKK-IGEQDGGKALSAKDINL 363
F + I Q G + +S D ++
Sbjct: 279 FTRDGIDVQTGMRVMSVTDKDI 300
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 325 LPALAQVAERQGKYLAELFNKKIGEQ-----DGGKALSAKDINLGDPFVYKHLGSMATVG 379
LPA AQVA +QG YLA+ FN+ EQ +G K + PF YKH G A +G
Sbjct: 457 LPATAQVAAQQGAYLAKCFNRM--EQCKELPEGPKRFRTGGHHQFRPFQYKHFGQFAPLG 514
Query: 380 RYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDIS 439
+A +L G S WL W S Y ++ +SWR R V +W ++FGRD S
Sbjct: 515 GDQAAAELPGDWVSAGKSA----QWL-WYSVYASKQVSWRTRALVVSDWTRRYIFGRDSS 569
Query: 440 RI 441
RI
Sbjct: 570 RI 571
>sp|Q07500|NDH2_YEAST External NADH-ubiquinone oxidoreductase 2, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NDE2 PE=1 SV=1
Length = 545
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 8/152 (5%)
Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
+K +V+LGTGWGA LK +DT +Y+ +SPR+ +FTPLL ST VGT+E +S+ EPV
Sbjct: 96 KKKELVILGTGWGAISLLKKLDTSLYNVTVVSPRSFFLFTPLLPSTPVGTIEMKSIVEPV 155
Query: 168 SRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG 226
I P Y+ A + +D +V ++V+ E ++YD LV++ G
Sbjct: 156 RSIA---RRTPGEVHYIEAEALDVDPKAKKVMVQSVS----EDEYFVSSLSYDYLVVSVG 208
Query: 227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
A+ TF I GV NA FL+E+ AQ IR KL+
Sbjct: 209 AKTTTFNIPGVYGNANFLKEIEDAQNIRMKLM 240
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 23/152 (15%)
Query: 303 SVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG-EQDGGKALSA--- 358
S ++A+GDC TG P AQVA ++G+YLA++ +KK+ EQ L++
Sbjct: 401 SENSIYAIGDCTA---HTG--FFPT-AQVAHQEGEYLAKILDKKLQIEQLEWDMLNSTDE 454
Query: 359 -------KDINLG----DPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIW 407
K++NL D F YKH+G++A +G A+ DL + L G ++L W
Sbjct: 455 TEVSRLQKEVNLRKSKLDKFNYKHMGALAYIGSETAIADLHMG--DSSYQLKGMFAFLFW 512
Query: 408 RSAYLTRVLSWRNRFYVAVNWATTFVFGRDIS 439
+SAYL LS RNR +A++W + GRD S
Sbjct: 513 KSAYLAMCLSIRNRILIAMDWTKVYFLGRDSS 544
>sp|F2Z699|NDH2_YARLI External alternative NADH-ubiquinone oxidoreductase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2
PE=1 SV=1
Length = 582
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Query: 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVS 168
K +VVLG+GWG+ FLK +DT Y+ + +SPRN+ +FTPLL S GT+E RS+ EP+
Sbjct: 112 KKTLVVLGSGWGSVSFLKKLDTSNYNVIVVSPRNYFLFTPLLPSCPTGTIEHRSIMEPIR 171
Query: 169 RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE 228
I ++ + A ID +K V + + S E ++ +D LV+ GA
Sbjct: 172 GIIRHKQAE--CQYLEADATKIDHEKRIVTIRSAVSEN-SKEEVIKEIPFDYLVVGVGAM 228
Query: 229 PLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
TFGI GV+ENA FL+E+ AQ+IR+ L+
Sbjct: 229 SSTFGIPGVQENACFLKEIPDAQQIRRTLM 258
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 79/177 (44%), Gaps = 40/177 (22%)
Query: 295 VDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN---------- 344
V+E+L E ++ALGDC+ AQVA ++G YLA L N
Sbjct: 414 VNEYLVVEGTEGIWALGDCSA-------TKYAPTAQVASQEGSYLANLLNGIAKTEDLNN 466
Query: 345 ------------------KKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVD 386
K I Q K+ + PF Y H GS+A +G +A+ D
Sbjct: 467 EITNLEKQSEHTFDEQERKNIFAQLESKSRKLRRSRAMLPFEYSHQGSLAYIGSDRAVAD 526
Query: 387 LRQSKDEKGI---SLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISR 440
L S + GI S G +++ WRSAY++ S RN+ V ++W VFGRDISR
Sbjct: 527 L--SFNFWGIMNWSSGGTMTYYFWRSAYVSMCFSMRNKILVCIDWMKVRVFGRDISR 581
>sp|Q9SKT7|NDB4_ARATH NAD(P)H dehydrogenase B4, mitochondrial OS=Arabidopsis thaliana
GN=NDB4 PE=1 SV=1
Length = 582
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAE 165
P K +VVVLG+GW FL ++ YD +SPRN +FTPLL S GT+E RS+ E
Sbjct: 60 PIRKKKVVVLGSGWSGYSFLSYLNNPNYDVQVVSPRNFFLFTPLLPSVTNGTVEARSIVE 119
Query: 166 PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA 225
P+ L + A C+ ID +++C + L +F + YD L++A
Sbjct: 120 PIR----GLMRKKGFEYKEAECVKIDASNKKIHCRSKEGSSLKGTT-EFDMDYDILILAV 174
Query: 226 GAEPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
GA+P TF GV+E+AYFL+E A IR ++
Sbjct: 175 GAKPNTFNTPGVEEHAYFLKEAEDALNIRHSVI 207
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 325 LPALAQVAERQGKYLAELFNKKIG---EQDGGKALSAKDINLGDPFVYKHLGSMATVGRY 381
LPA AQVA +QGKYLA+ FNK + +G + + PF Y+H GS A +G
Sbjct: 468 LPATAQVASQQGKYLAKCFNKMEKCEKKPEGPLRFRGEGRHRFQPFRYRHFGSFAPLGGE 527
Query: 382 KALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI 441
+ +L +S+ WL W S Y ++++SWR R V +W FVFGRD S I
Sbjct: 528 QTAAELPGD----WVSIGHSSQWL-WYSVYASKLVSWRTRMLVISDWTRRFVFGRDSSSI 582
>sp|O14121|NDH1_SCHPO Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC3A11.07 PE=3 SV=1
Length = 551
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVS 168
K +VVLG GWGA L+ IDT +++ + +SPRN+ +FT LL ST G++ RS+ +P+
Sbjct: 91 KKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRSIVQPIR 150
Query: 169 RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE 228
+ S FY A C +D DK ++ + + E ++ YD LV + GAE
Sbjct: 151 YMLRHKSC--YVKFYEAECTDVDADKKVIHIKKTTTDGVDLEQ---EIKYDYLVCSHGAE 205
Query: 229 PLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
TF I G+ E FL+E+ AQ+IR ++L
Sbjct: 206 TQTFNIPGIAEYGCFLKEIWDAQKIRARIL 235
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 85/169 (50%), Gaps = 30/169 (17%)
Query: 295 VDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGK 354
VDE+L+ +D+FALGDC T P AQVA +QG YL +LFNK +G + K
Sbjct: 391 VDEYLKLKGYKDIFALGDC------THTAYAPT-AQVASQQGAYLGQLFNK-LGSLNFEK 442
Query: 355 ALSAKDINLGD----------------------PFVYKHLGSMATVGRYKALVDLRQSKD 392
+ I LGD PF Y H GS+A VG KA+ D+
Sbjct: 443 PSEDRHIALGDEMDSSTLISLANEKHASTKVFLPFKYSHQGSLAYVGHEKAIADIEVPWF 502
Query: 393 EKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI 441
K + +G L++ WRS YL+ + S RNR V ++W +FGRDIS +
Sbjct: 503 GKQLHASGALAFYFWRSVYLSELYSLRNRTNVTLDWIRVKLFGRDISSL 551
>sp|O43090|NDH2_SCHPO Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC947.15c PE=3 SV=1
Length = 551
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVS 168
K +VVLG+GWGA +K +D +Y+ +SPR+H +FTP+L S VGTL S+ EP+
Sbjct: 90 KKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLPSITEPIV 149
Query: 169 RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE 228
+ DP S + A C IDT +V T+ ++E + + YD LV A GA
Sbjct: 150 ALFKG-KIDP-SNIHQAECTAIDTSAKKV---TIRGTTEANEGKEAVIPYDTLVFAIGAG 204
Query: 229 PLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
TFGI+GV+++ FL+E A+++ ++
Sbjct: 205 NQTFGIQGVRDHGCFLKEAGDAKKVFNRIF 234
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 29/163 (17%)
Query: 295 VDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN---------- 344
VDE+ R V +++A+GDCA +G LPA AQVA +QG +LA+ N
Sbjct: 392 VDEFFRVKGVPEMYAVGDCAF----SG---LPATAQVANQQGAWLAKNLNVEGKKFALHE 444
Query: 345 ------KKIGEQDG-----GKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDE 393
K++GE++ G + + L +PF Y H G++A VG KA+ DL+ +
Sbjct: 445 RIQALEKQLGEKEAPSQVAGLKQQVEQLKL-EPFKYHHQGALAYVGDEKAIADLKLPFMK 503
Query: 394 KGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGR 436
K + L G + WR AYL ++S R++F V ++W T +FGR
Sbjct: 504 KMLPLQGIVGHTFWRLAYLNELISARSQFMVLIDWLKTRLFGR 546
>sp|Q8GXR9|DHNA_ARATH NADH dehydrogenase C1, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=NDC1 PE=1 SV=2
Length = 519
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQD 351
Q DE LR +FALGD + + GK +LP AQVA ++ +
Sbjct: 376 QAETDETLRVKGHPRIFALGDSSSLRDSNGK-ILPTTAQVAFQEADF------------T 422
Query: 352 GGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAY 411
G +A + PF +++LG M T+GRY A + +G++L G + + AY
Sbjct: 423 GWNIWAAINNRPLLPFRFQNLGEMMTLGRYDAAI---SPSFIEGLTLEGPIGHAARKLAY 479
Query: 412 LTRVLSWRNRFYVAVNW 428
L R+ + +RF V ++W
Sbjct: 480 LIRLPTDEHRFKVGISW 496
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 18/180 (10%)
Query: 86 VEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIY------DAVCIS 139
+ ++E+ + S+P ++PRV +LG G+G +++ ++ V +
Sbjct: 63 ISDNETAPRTYSWPD------NKRPRVCILGGGFGGLYTALRLESLVWPEDKKPQVVLVD 116
Query: 140 PRNHMVFTPLLASTCVGTLEFRSVAEPVSRI--QTSLSSDPNSYFYLASCIGIDTDKHEV 197
VF P+L G ++ +A S + T + + L C + + E+
Sbjct: 117 QSERFVFKPMLYELLSGEVDVWEIAPRFSDLLTNTGIQFLRDRVKTLLPCDHLGVNGSEI 176
Query: 198 YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
+V G + E FK+ YD LV+A GAE + G E A+ + A + +KL
Sbjct: 177 ---SVTGGTVLLE-SGFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLEDAIRVNEKL 232
>sp|O05267|YUMB_BACSU NADH dehydrogenase-like protein YumB OS=Bacillus subtilis (strain
168) GN=yumB PE=3 SV=1
Length = 406
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 20/157 (12%)
Query: 109 KPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVA 164
KP++V+LG G+G R K + D ++ N+ T + GTL
Sbjct: 5 KPKIVILGAGYGGLMTVTRLTKYVGPNDADITLVNKHNYHYETTWMHEASAGTLHHDRCR 64
Query: 165 EPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIA 224
+ + + F + I D+ +V + NG+L YD LVI
Sbjct: 65 YQIKDVINQSRVN----FVQDTVKAIKIDEKKV---VLANGELQ---------YDYLVIG 108
Query: 225 AGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL 261
GA P TFGIKG+KE A+ + +N ++ +R+ + L
Sbjct: 109 LGAVPETFGIKGLKEYAFPIANINTSRLLREHIELQF 145
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI 347
++ V+ LRAP ++VF LGD + F+ + + P AQ+A +QG +A+ + I
Sbjct: 282 GRVKVNPDLRAPGHDNVFILGDSSLFMNEDTERPYPPTAQIAMQQGITVAKNLGRLI 338
>sp|Q5HHE4|Y944_STAAC NADH dehydrogenase-like protein SACOL0944 OS=Staphylococcus aureus
(strain COL) GN=SACOL0944 PE=3 SV=1
Length = 402
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K I T+ + I+ + L GTL + V
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDV 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + L D + F A ID D +V E +Q +D LV+
Sbjct: 64 LYPVESV---LKKDKVN-FVQAEVTKIDRDAKKV------------ETNQGIYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
A G TFGI+G+K++A+ + V A+E+ + +
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHI 141
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
V+ +I + L +++F +GDC+ F+ + LP AQ+A +QG+ +A+
Sbjct: 278 VKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAK 331
>sp|Q99VE0|Y941_STAAM NADH dehydrogenase-like protein SAV0941 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV0941 PE=1 SV=1
Length = 402
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K I T+ + I+ + L GTL + V
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDV 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + L D + F A ID D +V E +Q +D LV+
Sbjct: 64 LYPVESV---LKKDKVN-FVQAEVTKIDRDAKKV------------ETNQGIYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
A G TFGI+G+K++A+ + V A+E+ + +
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHI 141
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
V+ +I + L +++F +GDC+ F+ + LP AQ+A +QG+ +A+
Sbjct: 278 VKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAK 331
>sp|Q6GIE7|Y903_STAAR NADH dehydrogenase-like protein SAR0903 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR0903 PE=3 SV=1
Length = 402
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K I T+ + I+ + L GTL + V
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDV 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + L D + F A ID D +V E +Q +D LV+
Sbjct: 64 LYPVESV---LKKDKVN-FVQAEVTKIDRDAKKV------------ETNQGIYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
A G TFGI+G+K++A+ + V A+E+ + +
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHI 141
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
V+ +I + L +++F +GDC+ F+ + LP AQ+A +QG+ +A+
Sbjct: 278 VKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAK 331
>sp|Q2FZV7|Y878_STAA8 NADH dehydrogenase-like protein SAOUHSC_00878 OS=Staphylococcus
aureus (strain NCTC 8325) GN=SAOUHSC_00878 PE=3 SV=1
Length = 402
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K I T+ + I+ + L GTL + V
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDV 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + L D + F A ID D +V E +Q +D LV+
Sbjct: 64 LYPVESV---LKKDKVN-FVQAEVTKIDRDAKKV------------ETNQGIYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
A G TFGI+G+K++A+ + V A+E+ + +
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHI 141
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
V+ +I + L +++F +GDC+ F+ + LP AQ+A +QG+ +A+
Sbjct: 278 VKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAK 331
>sp|Q2FID4|Y844_STAA3 NADH dehydrogenase-like protein SAUSA300_0844 OS=Staphylococcus
aureus (strain USA300) GN=SAUSA300_0844 PE=3 SV=1
Length = 402
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K I T+ + I+ + L GTL + V
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDV 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + L D + F A ID D +V E +Q +D LV+
Sbjct: 64 LYPVESV---LKKDKVN-FVQAEVTKIDRDAKKV------------ETNQGIYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
A G TFGI+G+K++A+ + V A+E+ + +
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHI 141
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
V+ +I + L +++F +GDC+ F+ + LP AQ+A +QG+ +A+
Sbjct: 278 VKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAK 331
>sp|Q7A6J4|Y802_STAAN NADH dehydrogenase-like protein SA0802 OS=Staphylococcus aureus
(strain N315) GN=SA0802 PE=1 SV=1
Length = 402
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K I T+ + I+ + L GTL + V
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDV 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + L D + F A ID D +V E +Q +D LV+
Sbjct: 64 LYPVESV---LKKDKVN-FVQAEVTKIDRDAKKV------------ETNQGIYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
A G TFGI+G+K++A+ + V A+E+ + +
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHI 141
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
V+ +I + L +++F +GDC+ F+ + LP AQ+A +QG+ +A+
Sbjct: 278 VKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAK 331
>sp|Q8NXG0|Y823_STAAW NADH dehydrogenase-like protein MW0823 OS=Staphylococcus aureus
(strain MW2) GN=MW0823 PE=3 SV=1
Length = 402
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K I T+ + I+ + L GTL + V
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDV 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + L D + F A ID D +V E +Q +D LV+
Sbjct: 64 LYPVESV---LKKDKVN-FVQAEVTKIDRDAKKV------------ETNQGIYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
A G TFGI+G+K++A+ + V A+E+ + +
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHI 141
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
V+ +I + L +++F +GDC+ F+ + LP AQ+A +QG+ +A+
Sbjct: 278 VKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAK 331
>sp|Q6GAY5|Y811_STAAS NADH dehydrogenase-like protein SAS0811 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS0811 PE=3 SV=1
Length = 402
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K I T+ + I+ + L GTL + V
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDV 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + L D + F A ID D +V E +Q +D LV+
Sbjct: 64 LYPVESV---LKKDKVN-FVQAEVTKIDRDAKKV------------ETNQGIYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
A G TFGI+G+K++A+ + V A+E+ + +
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHI 141
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
V+ +I + L +++F +GDC+ F+ + LP AQ+A +QG+ +A+
Sbjct: 278 VKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAK 331
>sp|P00393|DHNA_ECOLI NADH dehydrogenase OS=Escherichia coli (strain K12) GN=ndh PE=1
SV=2
Length = 434
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 136 VCISPRNH-MVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSY-FYLASCIGIDTD 193
+ + RNH ++ PLL G+L+ E V + + + + F L S I ID +
Sbjct: 36 ITLVDRNHSHLWKPLLHEVATGSLD-----EGVDALSYLAHARNHGFQFQLGSVIDIDRE 90
Query: 194 KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI 253
+ + + K + K+AYD LV+A G+ F GVKEN FL + A+
Sbjct: 91 AKTITIAELRDEKGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRF 150
Query: 254 RKKLLLNLML 263
++ +LNL L
Sbjct: 151 HQE-MLNLFL 159
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 289 RLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG 348
R++Q+ V+ L+ D++A+GDCA G V P AQ A + +A I
Sbjct: 292 RINQLVVEPTLQTTRDPDIYAIGDCASCPRPEGGFV-PPRAQAAHQ----MATCAMNNIL 346
Query: 349 EQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWR 408
Q GK L + YK GS+ ++ + + L + + + G ++ ++
Sbjct: 347 AQMNGKPLKN--------YQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRIARFVYI 398
Query: 409 SAYLTRVLSWRNRF 422
S Y ++ F
Sbjct: 399 SLYRMHQIALHGYF 412
>sp|Q2YWP9|Y807_STAAB NADH dehydrogenase-like protein SAB0807 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=SAB0807 PE=3 SV=1
Length = 402
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K I T+ + I+ + L GTL + V
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKTISTEEAEITLINKNEYHYEATWLHEASAGTLNYEDV 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + L D + F A ID D +V E +Q +D LV+
Sbjct: 64 LYPVESV---LKKDKVN-FVQAEVTKIDRDAKKV------------ETNQGIYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
A G TFGI+G+K++A+ + V A+E+ + +
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHI 141
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
V+ +I + L +++F +GDC+ F+ + LP AQ+A +QG+ +A+
Sbjct: 278 VKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEERPLPTTAQIAMQQGESVAK 331
>sp|Q4L4V6|Y2010_STAHJ NADH dehydrogenase-like protein SH2010 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2010 PE=3 SV=1
Length = 402
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K + D I+ + L GTL + +
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKELSADEADITLINKNKYHYEATWLHEASAGTLNYEDL 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
P+ S+ + F A ID + +V N+G YD LV+
Sbjct: 64 IYPIE----SVIKEDKVKFINAEVTKIDRNAKKV---ETNHGIYD---------YDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
A G E TFGI G+K+ A+ + + A+++ + +
Sbjct: 108 ALGFESETFGINGMKDYAFQIENIETARKLSRHI 141
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
V+ +I + L +D+F +GD + F+ + LP AQ+A +QG+++A+
Sbjct: 278 VKRGRIVTKQDLTIEGHDDIFVIGDVSAFIPAGEERPLPTTAQIAMQQGEHVAK 331
>sp|P44856|DHNA_HAEIN NADH dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=ndh PE=3 SV=1
Length = 444
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 281 TITLSF----LVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQG 336
T+T F + R++Q+ V + L+ + +FA+GDCA ++ GK V P AQ A +
Sbjct: 290 TVTQQFDGLEINRINQLVVKDTLQTTVDDSIFAIGDCAALIQSNGKLV-PPRAQAAHQMA 348
Query: 337 KYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGI 396
K A K I K L + F Y G++ ++ + AL L + +
Sbjct: 349 KACA----KNIFALFENKPLKS--------FKYNDKGTLVSLSNFTALGSLTNKFGKNPL 396
Query: 397 SLAGFLSWLIWRSAY 411
++ G + + S Y
Sbjct: 397 TVQGKFAQFAYVSLY 411
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 215 KVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLL-LNLMLSEN 266
++ YD LVIA G++ F KGV +N FL A + KLL L L SEN
Sbjct: 108 RIPYDYLVIAIGSKSNDFNTKGVADNCIFLDSSKQALRFQHKLLELFLKFSEN 160
>sp|Q5L404|RPOC_GEOKA DNA-directed RNA polymerase subunit beta' OS=Geobacillus
kaustophilus (strain HTA426) GN=rpoC PE=3 SV=1
Length = 1199
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 25/168 (14%)
Query: 179 NSYFYLASCIGIDTD--KHEVYCETVNN-------GKLSHE---PHQFKVAYDKLVIAAG 226
N Y +L S I I K+E + E NN GKL P+ F
Sbjct: 528 NGYVHLHSRIAIHAGSLKNETFTEEQNNKLLLTTVGKLIFNEILPNSFPYI--------- 578
Query: 227 AEPLTFGIKGVKENAYFL-REVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLS 285
EP T I+G + YFL + VN +EIRK+ L+ + G + K F IT T
Sbjct: 579 NEPTTENIEGRTPDKYFLDKGVNVREEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSK 638
Query: 286 FLVRLSQIGVDEWLRAP---SVEDVFALGDCAGFLEQTGKPVLPALAQ 330
L R+ +G +A V D+ L + L++ V L Q
Sbjct: 639 MLDRMKDLGFQYSTKAGITIGVADIVVLPEKQEILDEAQAKVDTVLKQ 686
>sp|Q49W80|Y1834_STAS1 NADH dehydrogenase-like protein SSP1834 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1834 PE=3 SV=1
Length = 402
Score = 38.5 bits (88), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 30/138 (21%)
Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI 347
V+ +I + L +D+F +GDC+ F+ + LP AQ+A +QG++ A+
Sbjct: 278 VKRGRIVTKQDLTIEGYDDIFVIGDCSAFIPAGEERPLPTTAQIATQQGEHTAK------ 331
Query: 348 GEQDGGKALSAKDINLGDP---FVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSW 404
+ K+I G P F Y G++ ++G + V + +D +G
Sbjct: 332 ---------NVKNILEGQPTNEFEYVDRGTVCSLGAHDG-VGVVYGRDIQG--------- 372
Query: 405 LIWRSAYLTRVLSWRNRF 422
++A++ +V+ R F
Sbjct: 373 --KKAAFMKKVIDTRAVF 388
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 108 EKPRVVVLGTGWGACRFLKGIDTKI----YDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + + + +I + I+ ++ L GT+ + +
Sbjct: 4 DRKKVLVLGAGYAGLQTITKLQKQISADEAEVTLINKNDYHYEATWLHEASAGTISYEDL 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV S+ + F A ID N K+ + F +D LV+
Sbjct: 64 LYPVE----SVVNKDKVNFVKAEVTKIDR----------NAKKVETDAGIFD--FDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
+ G E TFGIKG+K+ A+ + V A+++ + +
Sbjct: 108 SLGFESETFGIKGMKDYAFQIENVLTARKLSRHI 141
>sp|Q8CPV5|Y635_STAES NADH dehydrogenase-like protein SE_0635 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_0635 PE=3 SV=1
Length = 402
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 306 DVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLA 340
D+F +GDC+ F+ + LP AQ+A +QG++ A
Sbjct: 296 DIFVIGDCSAFIPADEERPLPTTAQIAMQQGEHTA 330
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K + + I+ + + L GT+ + +
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKELSADAAEITLINKNEYHYESTWLHEASAGTINYEDL 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + T + N F +A ID + V E + +D LV+
Sbjct: 64 LYPVEK--TVNKNKVN--FVVAEVTKIDRNAKRV------------ETDKGVYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREV 247
A G TFGI G+KE+A+ + V
Sbjct: 108 ALGFVSETFGIDGMKEHAFQIENV 131
>sp|Q5HQM1|Y527_STAEQ NADH dehydrogenase-like protein SERP0527 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP0527 PE=3
SV=1
Length = 402
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Query: 108 EKPRVVVLGTGWGA----CRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV 163
++ +V+VLG G+ + K + + I+ + + L GT+ + +
Sbjct: 4 DRKKVLVLGAGYAGLQTVTKLQKELSADAAEITLINKNEYHYESTWLHEASAGTINYEDL 63
Query: 164 AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
PV + +++ D + F +A ID + V E + +D LV+
Sbjct: 64 LYPVEK---TVNKDKVN-FVVAEVTKIDRNAKRV------------ETDKGVYDFDILVV 107
Query: 224 AAGAEPLTFGIKGVKENAYFLREV 247
A G TFGI G+KE+A+ + V
Sbjct: 108 ALGFVSETFGIDGMKEHAFQIENV 131
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 306 DVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLA 340
D+F +GDC+ F+ + LP AQ+A +QG++ A
Sbjct: 296 DIFVIGDCSAFIPAGEERPLPTTAQIAMQQGEHTA 330
>sp|A4IJI2|RPOC_GEOTN DNA-directed RNA polymerase subunit beta' OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=rpoC PE=3 SV=2
Length = 1199
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 179 NSYFYLASCIGIDTD--KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA---EPLTFG 233
N Y +L S I I K+E + NN L K+ +++++ + EP T
Sbjct: 528 NGYVHLHSRIAIHAGSLKNETFTPEQNNKLLLTTVG--KLIFNEILPKSFPYINEPTTEN 585
Query: 234 IKGVKENAYFL-REVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQ 292
I+G + YFL + V+ +EIRK+ L+ + G + K F IT T L R+
Sbjct: 586 IEGRTPDKYFLDKGVDVREEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDRMKD 645
Query: 293 IGVDEWLRAP---SVEDVFALGDCAGFLEQTGKPVLPALAQ 330
+G +A V D+ L + L++ V L Q
Sbjct: 646 LGFQYSTKAGITIGVSDIVVLPEKQEILDEAQAKVDTVLKQ 686
>sp|P80861|YJLD_BACSU NADH dehydrogenase-like protein YjlD OS=Bacillus subtilis (strain
168) GN=yjlD PE=1 SV=3
Length = 392
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 295 VDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLA 340
V+++L++ S EDVF GD A + G+P P AQ+A + G+ +
Sbjct: 278 VNDFLQSTSHEDVFVAGDSAVYFGPDGRP-YPPTAQIAWQMGELIG 322
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 21/148 (14%)
Query: 111 RVVVLGTGWG---ACRFLKGIDTKIYDAVCISPR--NHMVFTPLLASTCVGTLEFRSVAE 165
+V+LG G+G + ++ TK V + + H + T L G + ++VA
Sbjct: 4 HIVILGAGYGGVLSALTVRKHYTKEQARVTVVNKYPTHQIITEL-HRLAAGNVSEKAVAM 62
Query: 166 PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA 225
P+ ++ D +A DK EV + +G + YD LV+
Sbjct: 63 PLEKLFKGKDID----LKIAEVSSFSVDKKEV---ALADGS--------TLTYDALVVGL 107
Query: 226 GAEPLTFGIKGVKENAYFLREVNHAQEI 253
G+ FGI G++EN+ L+ A ++
Sbjct: 108 GSVTAYFGIPGLEENSMVLKSAADANKV 135
>sp|P42433|NASB_BACSU Assimilatory nitrate reductase electron transfer subunit
OS=Bacillus subtilis (strain 168) GN=nasB PE=2 SV=2
Length = 771
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 36/197 (18%)
Query: 108 EKPRVVVLGTGWGACRFLKGI---DTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVA 164
+K R+V+ G G R ++ + + +++ V H + +L S+ L+ +
Sbjct: 2 KKQRLVLAGNGMAGIRCIEEVLKLNRHMFEIVIFGSEPHPNYNRILLSS---VLQGEASL 58
Query: 165 EPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
+ ++ Y + I IDTD+ +V + + ++YDKL++
Sbjct: 59 DDITLNSKDWYDKHGITLYTGETVIQIDTDQQQVITD-----------RKRTLSYDKLIV 107
Query: 224 AAGAEPLTFGIKGV-KENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVI-- 280
A G+ P I G K+ Y R + Q L+N+ Q F K VI
Sbjct: 108 ATGSSPHILPIPGADKKGVYGFRTIEDCQA-----LMNM---------AQHFQKAAVIGA 153
Query: 281 -TITLSFLVRLSQIGVD 296
+ L V L +G+D
Sbjct: 154 GLLGLEAAVGLQHLGMD 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,262,047
Number of Sequences: 539616
Number of extensions: 6922775
Number of successful extensions: 16084
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15974
Number of HSP's gapped (non-prelim): 72
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)