Query 013561
Match_columns 441
No_of_seqs 502 out of 3899
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2495 NADH-dehydrogenase (ub 100.0 4.4E-53 9.6E-58 410.6 19.2 323 105-441 51-491 (491)
2 COG1252 Ndh NADH dehydrogenase 100.0 6.9E-51 1.5E-55 405.7 27.1 295 108-438 2-404 (405)
3 PTZ00318 NADH dehydrogenase-li 100.0 1.4E-46 3E-51 386.3 27.7 309 106-441 7-424 (424)
4 KOG0399 Glutamate synthase [Am 100.0 1.5E-39 3.2E-44 340.6 10.3 195 27-254 1708-1903(2142)
5 PRK12779 putative bifunctional 100.0 2.2E-37 4.7E-42 342.0 9.8 191 27-243 222-420 (944)
6 PRK12831 putative oxidoreducta 100.0 2.8E-36 6.1E-41 312.6 9.7 192 26-244 61-257 (464)
7 TIGR03169 Nterm_to_SelD pyridi 100.0 3.4E-34 7.4E-39 288.9 21.9 269 111-417 1-363 (364)
8 TIGR01316 gltA glutamate synth 100.0 6.7E-36 1.4E-40 309.0 7.8 191 26-243 49-246 (449)
9 PRK12778 putative bifunctional 100.0 3.2E-34 7E-39 313.8 11.3 191 27-243 351-545 (752)
10 PRK09853 putative selenate red 100.0 2.8E-34 6.1E-39 313.2 10.5 189 26-242 460-649 (1019)
11 PRK12775 putative trifunctiona 100.0 3.6E-34 7.7E-39 319.0 11.0 190 26-243 352-545 (1006)
12 PRK12810 gltD glutamate syntha 100.0 6.8E-34 1.5E-38 295.9 10.5 189 26-242 65-255 (471)
13 PRK12769 putative oxidoreducta 100.0 1.9E-33 4E-38 303.4 11.1 184 27-238 248-434 (654)
14 TIGR03315 Se_ygfK putative sel 100.0 2.2E-33 4.7E-38 307.7 11.1 186 26-239 458-644 (1012)
15 COG0493 GltD NADPH-dependent g 100.0 5E-33 1.1E-37 284.2 12.3 184 27-238 44-230 (457)
16 PRK11749 dihydropyrimidine deh 100.0 3.8E-32 8.3E-37 282.0 11.8 183 27-238 62-247 (457)
17 PRK12809 putative oxidoreducta 100.0 4E-32 8.7E-37 292.0 12.2 184 27-238 231-417 (639)
18 PRK12814 putative NADPH-depend 100.0 3E-32 6.4E-37 293.2 11.0 185 26-238 115-300 (652)
19 TIGR01317 GOGAT_sm_gam glutama 100.0 2.3E-32 5E-37 284.9 9.0 189 26-242 65-255 (485)
20 TIGR01318 gltD_gamma_fam gluta 100.0 1E-31 2.3E-36 278.9 10.1 185 26-238 61-248 (467)
21 PRK13984 putative oxidoreducta 100.0 2.6E-31 5.6E-36 284.8 10.0 184 27-238 205-390 (604)
22 PRK12771 putative glutamate sy 100.0 9E-30 1.9E-34 270.6 8.6 113 27-145 61-173 (564)
23 PRK09754 phenylpropionate diox 99.9 3.7E-25 7.9E-30 225.7 20.5 242 109-381 3-334 (396)
24 PRK13512 coenzyme A disulfide 99.9 1.3E-24 2.8E-29 224.5 19.4 223 110-344 2-310 (438)
25 PRK09564 coenzyme A disulfide 99.9 2.5E-24 5.3E-29 222.9 16.5 223 110-344 1-315 (444)
26 PRK06567 putative bifunctional 99.9 6.3E-26 1.4E-30 245.0 4.4 190 28-238 293-519 (1028)
27 PRK04965 NADH:flavorubredoxin 99.9 2.5E-23 5.3E-28 210.9 18.5 212 109-344 2-300 (377)
28 PRK14989 nitrite reductase sub 99.9 3.2E-23 6.9E-28 227.7 19.8 213 109-344 3-308 (847)
29 TIGR02374 nitri_red_nirB nitri 99.9 1.1E-22 2.3E-27 223.4 19.1 211 112-344 1-299 (785)
30 COG1249 Lpd Pyruvate/2-oxoglut 99.9 5.4E-21 1.2E-25 195.7 19.9 188 109-381 173-361 (454)
31 TIGR01424 gluta_reduc_2 glutat 99.9 1.8E-21 3.9E-26 201.6 13.9 115 110-238 3-151 (446)
32 PLN02507 glutathione reductase 99.9 6.4E-21 1.4E-25 199.7 18.1 211 109-344 25-361 (499)
33 PRK06467 dihydrolipoamide dehy 99.9 1.7E-21 3.7E-26 202.9 13.0 211 109-344 4-335 (471)
34 PRK14694 putative mercuric red 99.9 5.6E-21 1.2E-25 199.1 16.4 213 108-344 5-333 (468)
35 PRK06370 mercuric reductase; V 99.9 9.8E-21 2.1E-25 197.0 17.2 118 107-238 3-154 (463)
36 PRK08010 pyridine nucleotide-d 99.9 3.2E-21 6.9E-26 199.5 12.4 120 109-238 3-140 (441)
37 PRK05249 soluble pyridine nucl 99.8 6.9E-21 1.5E-25 198.1 13.2 120 109-237 5-157 (461)
38 TIGR01292 TRX_reduct thioredox 99.8 1.7E-20 3.6E-25 183.4 13.3 114 111-238 2-121 (300)
39 PRK07251 pyridine nucleotide-d 99.8 2.1E-20 4.5E-25 193.3 13.9 120 109-238 3-139 (438)
40 PRK13748 putative mercuric red 99.8 4.9E-20 1.1E-24 196.3 16.8 212 109-344 98-426 (561)
41 PRK06116 glutathione reductase 99.8 3E-20 6.4E-25 192.8 14.7 115 109-238 4-152 (450)
42 TIGR01423 trypano_reduc trypan 99.8 8.6E-20 1.9E-24 190.3 16.6 215 109-344 3-349 (486)
43 PTZ00058 glutathione reductase 99.8 4.9E-20 1.1E-24 194.4 15.0 53 291-344 353-430 (561)
44 PRK06416 dihydrolipoamide dehy 99.8 2.4E-20 5.3E-25 194.0 12.5 44 291-344 289-332 (462)
45 PRK14727 putative mercuric red 99.8 6.1E-20 1.3E-24 191.7 15.4 120 109-238 16-171 (479)
46 PRK07845 flavoprotein disulfid 99.8 8.6E-20 1.9E-24 190.0 16.4 213 109-344 1-335 (466)
47 PLN02546 glutathione reductase 99.8 6.2E-20 1.3E-24 193.7 15.0 116 109-238 79-237 (558)
48 TIGR02053 MerA mercuric reduct 99.8 4.9E-20 1.1E-24 191.8 13.8 114 111-238 2-149 (463)
49 TIGR01421 gluta_reduc_1 glutat 99.8 5E-20 1.1E-24 190.9 13.7 44 291-344 283-326 (450)
50 PRK07846 mycothione reductase; 99.8 1.8E-19 4E-24 186.6 17.4 206 110-344 2-323 (451)
51 PRK06115 dihydrolipoamide dehy 99.8 8.9E-20 1.9E-24 189.9 13.6 43 292-344 294-336 (466)
52 PRK06912 acoL dihydrolipoamide 99.8 1.5E-19 3.2E-24 187.9 14.5 117 111-237 2-152 (458)
53 PRK05976 dihydrolipoamide dehy 99.8 1.4E-19 3.1E-24 188.8 13.8 116 109-232 4-157 (472)
54 TIGR01438 TGR thioredoxin and 99.8 2.8E-19 6.1E-24 186.6 15.7 121 110-239 3-165 (484)
55 TIGR03143 AhpF_homolog putativ 99.8 1.5E-19 3.3E-24 191.7 13.7 118 109-238 4-123 (555)
56 PRK10262 thioredoxin reductase 99.8 9.5E-20 2.1E-24 180.7 10.7 118 109-238 6-126 (321)
57 TIGR01350 lipoamide_DH dihydro 99.8 7.4E-19 1.6E-23 182.8 16.0 44 291-344 287-330 (461)
58 TIGR03385 CoA_CoA_reduc CoA-di 99.8 1.2E-18 2.6E-23 179.5 15.7 208 123-344 1-302 (427)
59 KOG1336 Monodehydroascorbate/f 99.8 1.8E-18 4E-23 172.3 14.2 219 109-345 74-382 (478)
60 COG1251 NirB NAD(P)H-nitrite r 99.8 1.6E-18 3.6E-23 179.9 14.0 216 109-347 3-307 (793)
61 PRK06292 dihydrolipoamide dehy 99.8 1.3E-18 2.9E-23 180.9 13.2 45 291-345 286-330 (460)
62 PTZ00052 thioredoxin reductase 99.8 4E-18 8.7E-23 178.7 16.0 122 109-240 5-168 (499)
63 TIGR03140 AhpF alkyl hydropero 99.8 1.1E-18 2.4E-23 183.7 10.4 117 108-238 211-332 (515)
64 PF07992 Pyr_redox_2: Pyridine 99.8 1.9E-19 4E-24 165.8 1.7 185 111-317 1-200 (201)
65 COG0492 TrxB Thioredoxin reduc 99.7 1.2E-17 2.6E-22 163.2 12.9 218 109-348 3-301 (305)
66 PRK12770 putative glutamate sy 99.7 2.5E-17 5.4E-22 165.5 13.5 48 291-348 303-350 (352)
67 PRK15317 alkyl hydroperoxide r 99.7 2.3E-17 4.9E-22 173.9 12.2 114 109-238 211-331 (517)
68 PRK07818 dihydrolipoamide dehy 99.7 3.8E-16 8.3E-21 162.7 19.4 162 109-344 172-334 (466)
69 PRK06327 dihydrolipoamide dehy 99.7 4.7E-16 1E-20 162.4 19.4 162 109-344 183-345 (475)
70 TIGR03452 mycothione_red mycot 99.7 2.7E-16 5.8E-21 163.2 16.2 157 109-344 169-326 (452)
71 PTZ00153 lipoamide dehydrogena 99.7 5.8E-16 1.3E-20 165.9 18.1 167 109-344 312-493 (659)
72 PLN02852 ferredoxin-NADP+ redu 99.7 3E-16 6.4E-21 162.5 10.1 108 108-238 25-136 (491)
73 KOG1335 Dihydrolipoamide dehyd 99.6 3.7E-16 8E-21 151.1 9.3 176 83-344 196-375 (506)
74 KOG3851 Sulfide:quinone oxidor 99.6 2.2E-16 4.7E-21 149.4 7.1 132 109-256 39-177 (446)
75 KOG4716 Thioredoxin reductase 99.6 3.8E-15 8.2E-20 142.0 10.0 46 291-345 319-364 (503)
76 KOG0405 Pyridine nucleotide-di 99.6 1.6E-14 3.5E-19 138.2 13.4 211 109-344 20-348 (478)
77 TIGR01372 soxA sarcosine oxida 99.5 1.9E-13 4.1E-18 154.0 17.4 133 109-244 163-302 (985)
78 COG0446 HcaD Uncharacterized N 99.5 2.2E-13 4.7E-18 138.8 13.9 215 112-345 1-309 (415)
79 COG3634 AhpF Alkyl hydroperoxi 99.3 4.4E-13 9.4E-18 128.5 1.1 118 107-239 209-335 (520)
80 KOG0404 Thioredoxin reductase 99.3 7.7E-12 1.7E-16 113.4 7.7 115 109-238 8-133 (322)
81 COG2081 Predicted flavoprotein 99.3 1.5E-10 3.3E-15 114.2 16.4 53 291-347 351-407 (408)
82 PLN02172 flavin-containing mon 99.3 1.3E-11 2.8E-16 128.1 9.1 127 107-238 8-184 (461)
83 COG1249 Lpd Pyruvate/2-oxoglut 99.2 1.3E-11 2.8E-16 126.9 6.6 166 109-290 4-216 (454)
84 KOG1346 Programmed cell death 99.2 3.2E-11 6.9E-16 118.1 8.7 219 111-344 180-517 (659)
85 PF14691 Fer4_20: Dihydroprymi 99.1 5.4E-13 1.2E-17 110.5 -7.2 63 27-92 44-108 (111)
86 KOG2755 Oxidoreductase [Genera 99.1 7.2E-11 1.6E-15 109.5 4.1 130 111-259 1-133 (334)
87 PTZ00188 adrenodoxin reductase 99.0 5.7E-10 1.2E-14 114.6 7.4 102 108-231 38-140 (506)
88 PF00743 FMO-like: Flavin-bind 99.0 1.7E-10 3.6E-15 121.6 2.3 123 109-238 1-163 (531)
89 PRK07818 dihydrolipoamide dehy 98.9 1.1E-09 2.4E-14 114.3 6.4 33 109-141 4-36 (466)
90 PF03486 HI0933_like: HI0933-l 98.9 3.4E-09 7.4E-14 108.1 9.2 48 291-342 358-409 (409)
91 PLN02463 lycopene beta cyclase 98.9 7.4E-08 1.6E-12 99.7 19.0 112 109-230 28-170 (447)
92 COG2072 TrkA Predicted flavopr 98.8 7.2E-09 1.6E-13 107.2 8.3 126 107-239 6-156 (443)
93 PRK06327 dihydrolipoamide dehy 98.8 1.2E-08 2.7E-13 106.6 9.8 152 109-275 4-199 (475)
94 PRK07251 pyridine nucleotide-d 98.8 2.8E-08 6E-13 103.0 11.5 157 109-344 157-314 (438)
95 PRK06912 acoL dihydrolipoamide 98.8 4.2E-08 9.2E-13 102.2 11.9 158 109-344 170-328 (458)
96 PTZ00153 lipoamide dehydrogena 98.8 1.1E-08 2.4E-13 110.1 7.4 33 109-141 116-148 (659)
97 TIGR03452 mycothione_red mycot 98.7 3.4E-08 7.5E-13 102.7 9.6 147 109-275 2-185 (452)
98 PRK06467 dihydrolipoamide dehy 98.7 6E-08 1.3E-12 101.4 11.4 104 109-233 174-278 (471)
99 KOG1800 Ferredoxin/adrenodoxin 98.7 2.3E-08 4.9E-13 97.7 7.5 108 109-238 20-130 (468)
100 KOG1399 Flavin-containing mono 98.7 4.6E-08 1E-12 100.4 9.8 125 107-237 4-163 (448)
101 PF13738 Pyr_redox_3: Pyridine 98.7 1.4E-08 3.1E-13 93.4 5.5 115 113-236 1-147 (203)
102 PRK05976 dihydrolipoamide dehy 98.7 1E-07 2.2E-12 99.7 11.9 159 109-344 180-341 (472)
103 COG1148 HdrA Heterodisulfide r 98.7 2.7E-06 5.8E-11 85.8 20.3 45 101-145 116-160 (622)
104 PRK06370 mercuric reductase; V 98.7 1.5E-07 3.3E-12 98.1 11.9 161 109-344 171-332 (463)
105 PRK07846 mycothione reductase; 98.7 1.6E-07 3.5E-12 97.6 11.8 101 109-234 166-267 (451)
106 TIGR02053 MerA mercuric reduct 98.6 1.7E-07 3.7E-12 97.7 11.7 161 109-344 166-327 (463)
107 PRK06115 dihydrolipoamide dehy 98.6 2.3E-07 4.9E-12 97.0 12.2 104 109-233 174-280 (466)
108 PRK05249 soluble pyridine nucl 98.6 2.1E-07 4.5E-12 97.0 11.4 158 109-344 175-333 (461)
109 TIGR01350 lipoamide_DH dihydro 98.6 2E-07 4.3E-12 97.1 11.1 102 109-232 170-272 (461)
110 PLN02697 lycopene epsilon cycl 98.6 1.3E-06 2.8E-11 92.0 17.1 34 109-142 108-141 (529)
111 PRK07845 flavoprotein disulfid 98.6 2.5E-07 5.3E-12 96.7 11.6 101 109-233 177-278 (466)
112 PRK08010 pyridine nucleotide-d 98.6 2.9E-07 6.4E-12 95.4 11.9 157 109-344 158-315 (441)
113 PRK06416 dihydrolipoamide dehy 98.6 2E-07 4.4E-12 97.2 9.9 104 109-233 172-276 (462)
114 TIGR01424 gluta_reduc_2 glutat 98.6 3.6E-07 7.8E-12 94.9 11.4 158 109-344 166-324 (446)
115 PRK06116 glutathione reductase 98.6 3.3E-07 7.2E-12 95.3 11.0 158 109-344 167-326 (450)
116 PLN02507 glutathione reductase 98.6 3.7E-07 8.1E-12 96.1 11.0 101 109-233 203-304 (499)
117 TIGR01421 gluta_reduc_1 glutat 98.5 4E-07 8.7E-12 94.6 10.8 102 109-233 166-269 (450)
118 PF00070 Pyr_redox: Pyridine n 98.5 1.7E-07 3.6E-12 73.3 5.7 71 111-196 1-72 (80)
119 TIGR01423 trypano_reduc trypan 98.5 6.2E-07 1.3E-11 94.0 11.2 101 109-233 187-292 (486)
120 PRK14694 putative mercuric red 98.5 1.1E-06 2.3E-11 91.9 12.0 99 109-233 178-277 (468)
121 PRK04176 ribulose-1,5-biphosph 98.4 2.4E-06 5.2E-11 82.1 12.7 37 109-145 25-61 (257)
122 PRK04965 NADH:flavorubredoxin 98.4 1E-06 2.2E-11 89.5 10.6 100 109-231 141-241 (377)
123 PRK09754 phenylpropionate diox 98.4 8.5E-07 1.8E-11 90.7 10.0 100 109-232 144-244 (396)
124 TIGR01438 TGR thioredoxin and 98.4 1.2E-06 2.7E-11 91.8 11.2 162 109-344 180-342 (484)
125 PRK13512 coenzyme A disulfide 98.4 6.8E-07 1.5E-11 92.6 9.0 96 109-232 148-244 (438)
126 TIGR00292 thiazole biosynthesi 98.4 1.2E-05 2.6E-10 77.0 16.8 37 109-145 21-57 (254)
127 PTZ00052 thioredoxin reductase 98.4 1.3E-06 2.9E-11 91.9 11.0 157 109-344 182-339 (499)
128 PTZ00058 glutathione reductase 98.4 1.1E-06 2.4E-11 93.4 10.4 102 109-233 237-340 (561)
129 PF01134 GIDA: Glucose inhibit 98.4 5E-07 1.1E-11 90.9 7.2 109 111-227 1-150 (392)
130 TIGR00136 gidA glucose-inhibit 98.4 1.2E-05 2.6E-10 85.2 17.9 32 111-142 2-33 (617)
131 TIGR03385 CoA_CoA_reduc CoA-di 98.4 1.1E-06 2.3E-11 90.8 9.7 99 109-232 137-236 (427)
132 PRK06847 hypothetical protein; 98.4 1.8E-06 3.9E-11 87.3 11.2 35 109-143 4-38 (375)
133 TIGR02032 GG-red-SF geranylger 98.4 8.4E-07 1.8E-11 86.1 8.5 34 111-144 2-35 (295)
134 PRK06292 dihydrolipoamide dehy 98.4 1.2E-06 2.7E-11 91.2 10.2 102 109-233 169-272 (460)
135 PF05834 Lycopene_cycl: Lycope 98.4 9.9E-06 2.1E-10 82.2 15.3 110 111-230 1-143 (374)
136 PLN02661 Putative thiazole syn 98.4 2.9E-05 6.2E-10 77.2 18.0 36 109-144 92-128 (357)
137 KOG1335 Dihydrolipoamide dehyd 98.3 7.5E-07 1.6E-11 87.3 6.4 152 109-275 39-227 (506)
138 PRK07236 hypothetical protein; 98.3 2E-06 4.4E-11 87.5 9.9 37 107-143 4-40 (386)
139 COG0029 NadB Aspartate oxidase 98.3 1.5E-05 3.2E-10 81.1 15.6 32 111-143 9-40 (518)
140 COG0644 FixC Dehydrogenases (f 98.3 2.4E-06 5.1E-11 87.4 10.2 39 109-147 3-41 (396)
141 PRK13748 putative mercuric red 98.3 2.2E-06 4.8E-11 91.6 10.4 99 109-233 270-369 (561)
142 PRK14727 putative mercuric red 98.3 2.4E-06 5.2E-11 89.6 10.2 156 109-344 188-344 (479)
143 PRK09564 coenzyme A disulfide 98.3 3.4E-06 7.3E-11 87.5 10.2 100 109-232 149-249 (444)
144 PLN02546 glutathione reductase 98.3 4.2E-06 9.2E-11 89.0 10.9 158 109-344 252-411 (558)
145 PRK10262 thioredoxin reductase 98.3 8.3E-06 1.8E-10 80.8 12.0 161 109-348 146-315 (321)
146 PRK05192 tRNA uridine 5-carbox 98.3 4.1E-06 9E-11 88.8 10.1 34 109-142 4-37 (618)
147 TIGR01790 carotene-cycl lycope 98.3 5E-06 1.1E-10 84.5 10.5 34 111-144 1-34 (388)
148 PRK10157 putative oxidoreducta 98.3 5.4E-06 1.2E-10 85.7 10.8 37 109-145 5-41 (428)
149 PRK08163 salicylate hydroxylas 98.2 1E-05 2.2E-10 82.4 12.5 36 109-144 4-39 (396)
150 PRK10015 oxidoreductase; Provi 98.2 6.3E-06 1.4E-10 85.2 10.9 37 109-145 5-41 (429)
151 PRK07608 ubiquinone biosynthes 98.2 7.3E-06 1.6E-10 83.2 10.8 36 109-144 5-40 (388)
152 PRK07494 2-octaprenyl-6-methox 98.2 1.5E-05 3.2E-10 81.1 12.4 35 109-143 7-41 (388)
153 PRK07364 2-octaprenyl-6-methox 98.2 6.7E-06 1.4E-10 84.4 9.9 36 109-144 18-53 (415)
154 PRK05868 hypothetical protein; 98.2 1.3E-05 2.8E-10 81.3 11.5 36 109-144 1-36 (372)
155 TIGR02374 nitri_red_nirB nitri 98.2 8.2E-06 1.8E-10 90.5 10.7 101 109-232 140-241 (785)
156 TIGR03140 AhpF alkyl hydropero 98.1 1.3E-05 2.9E-10 84.7 11.1 158 109-348 352-513 (515)
157 COG3380 Predicted NAD/FAD-depe 98.1 7.4E-06 1.6E-10 77.2 8.0 33 111-143 3-35 (331)
158 PRK14989 nitrite reductase sub 98.1 8.1E-06 1.8E-10 90.8 9.7 101 109-232 145-248 (847)
159 PRK09126 hypothetical protein; 98.1 1.5E-05 3.2E-10 81.1 11.0 35 109-143 3-37 (392)
160 TIGR02023 BchP-ChlP geranylger 98.1 8.4E-06 1.8E-10 83.1 9.0 31 111-141 2-32 (388)
161 PRK08773 2-octaprenyl-3-methyl 98.1 1.8E-05 4E-10 80.6 11.3 37 107-143 4-40 (392)
162 PF13450 NAD_binding_8: NAD(P) 98.1 3E-06 6.6E-11 64.1 4.1 32 114-145 1-32 (68)
163 PRK09897 hypothetical protein; 98.1 1.7E-05 3.6E-10 83.8 11.0 37 109-145 1-39 (534)
164 COG0446 HcaD Uncharacterized N 98.1 8E-06 1.7E-10 83.1 8.4 101 109-231 136-239 (415)
165 TIGR01292 TRX_reduct thioredox 98.1 3E-05 6.6E-10 75.4 11.6 157 109-347 141-300 (300)
166 PRK08849 2-octaprenyl-3-methyl 98.1 1.6E-05 3.5E-10 80.9 9.9 33 110-142 4-36 (384)
167 KOG0405 Pyridine nucleotide-di 98.1 4.7E-06 1E-10 80.8 5.5 131 65-233 160-291 (478)
168 PF13454 NAD_binding_9: FAD-NA 98.1 3.5E-05 7.5E-10 68.3 10.8 31 113-143 1-36 (156)
169 PRK06834 hypothetical protein; 98.1 2.1E-05 4.5E-10 82.7 10.8 35 109-143 3-37 (488)
170 KOG1336 Monodehydroascorbate/f 98.1 2E-05 4.3E-10 79.8 10.0 104 109-235 213-319 (478)
171 PRK15317 alkyl hydroperoxide r 98.1 2.3E-05 4.9E-10 83.0 10.9 158 109-348 351-512 (517)
172 PRK08850 2-octaprenyl-6-methox 98.0 3.7E-05 8E-10 78.8 11.8 33 109-141 4-36 (405)
173 PRK06184 hypothetical protein; 98.0 1.6E-05 3.4E-10 83.9 9.3 36 109-144 3-38 (502)
174 PRK05714 2-octaprenyl-3-methyl 98.0 3.3E-05 7.2E-10 79.1 11.1 33 110-142 3-35 (405)
175 TIGR01984 UbiH 2-polyprenyl-6- 98.0 4E-05 8.6E-10 77.7 11.6 34 111-144 1-35 (382)
176 TIGR02028 ChlP geranylgeranyl 98.0 2.9E-05 6.2E-10 79.5 10.5 33 111-143 2-34 (398)
177 PRK06126 hypothetical protein; 98.0 3E-05 6.5E-10 82.7 11.1 35 109-143 7-41 (545)
178 PRK08244 hypothetical protein; 98.0 2.8E-05 6.2E-10 81.8 10.7 35 110-144 3-37 (493)
179 PRK06753 hypothetical protein; 98.0 1.8E-05 4E-10 79.9 8.8 34 111-144 2-35 (373)
180 PTZ00318 NADH dehydrogenase-li 98.0 2.2E-05 4.7E-10 81.1 9.3 93 110-230 174-281 (424)
181 PRK07588 hypothetical protein; 98.0 3.3E-05 7.1E-10 78.7 10.5 34 111-144 2-35 (391)
182 PRK05732 2-octaprenyl-6-methox 98.0 5.8E-05 1.3E-09 76.8 12.1 33 109-141 3-38 (395)
183 PRK08020 ubiF 2-octaprenyl-3-m 98.0 2.7E-05 5.8E-10 79.2 9.3 34 109-142 5-38 (391)
184 KOG0029 Amine oxidase [Seconda 98.0 7.8E-06 1.7E-10 85.5 4.8 40 106-145 12-51 (501)
185 PRK06183 mhpA 3-(3-hydroxyphen 97.9 6.2E-05 1.3E-09 80.1 11.1 37 108-144 9-45 (538)
186 PLN02487 zeta-carotene desatur 97.9 1.5E-05 3.3E-10 84.8 6.2 64 81-145 47-111 (569)
187 COG0654 UbiH 2-polyprenyl-6-me 97.9 4.1E-05 9E-10 78.0 9.2 33 109-141 2-34 (387)
188 PRK08132 FAD-dependent oxidore 97.9 8.9E-05 1.9E-09 79.1 12.1 36 109-144 23-58 (547)
189 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 2.2E-05 4.8E-10 80.3 7.0 34 111-144 2-35 (433)
190 PRK11445 putative oxidoreducta 97.9 9.3E-05 2E-09 74.4 11.4 33 110-143 2-34 (351)
191 TIGR01316 gltA glutamate synth 97.9 5.6E-05 1.2E-09 78.6 10.0 165 108-347 271-449 (449)
192 PRK07333 2-octaprenyl-6-methox 97.9 4.6E-05 1E-09 77.8 9.2 34 110-143 2-37 (403)
193 COG1635 THI4 Ribulose 1,5-bisp 97.9 9.7E-06 2.1E-10 74.2 3.6 35 111-145 32-66 (262)
194 PLN02985 squalene monooxygenas 97.9 8E-05 1.7E-09 78.7 10.8 35 108-142 42-76 (514)
195 PRK05329 anaerobic glycerol-3- 97.8 0.00011 2.3E-09 75.6 11.0 183 113-346 219-419 (422)
196 PRK07190 hypothetical protein; 97.8 8.9E-05 1.9E-09 77.9 10.4 36 109-144 5-40 (487)
197 PRK12831 putative oxidoreducta 97.8 0.00016 3.5E-09 75.5 11.3 167 108-348 280-461 (464)
198 TIGR03169 Nterm_to_SelD pyridi 97.8 9.2E-05 2E-09 74.6 9.1 94 109-231 145-245 (364)
199 PRK07208 hypothetical protein; 97.8 2.5E-05 5.5E-10 81.8 5.0 39 107-145 2-40 (479)
200 PF01946 Thi4: Thi4 family; PD 97.8 2E-05 4.2E-10 72.5 3.5 36 110-145 18-53 (230)
201 PRK12770 putative glutamate sy 97.8 9.3E-05 2E-09 74.4 8.8 105 109-232 172-289 (352)
202 COG3349 Uncharacterized conser 97.8 2.3E-05 4.9E-10 80.5 4.2 37 110-146 1-37 (485)
203 TIGR03143 AhpF_homolog putativ 97.7 0.0002 4.4E-09 76.5 11.3 159 109-349 143-310 (555)
204 PRK11883 protoporphyrinogen ox 97.7 2.6E-05 5.7E-10 80.7 4.4 36 110-145 1-38 (451)
205 COG1233 Phytoene dehydrogenase 97.7 2.9E-05 6.3E-10 81.6 4.7 37 109-145 3-39 (487)
206 TIGR00275 flavoprotein, HI0933 97.7 9.6E-05 2.1E-09 75.7 8.4 33 113-145 1-33 (400)
207 PF01494 FAD_binding_3: FAD bi 97.7 3.1E-05 6.6E-10 76.9 4.4 34 111-144 3-36 (356)
208 TIGR01789 lycopene_cycl lycope 97.7 0.00017 3.8E-09 73.0 9.9 33 111-143 1-35 (370)
209 PRK12810 gltD glutamate syntha 97.7 0.00027 5.9E-09 74.0 11.5 174 108-348 280-465 (471)
210 COG2509 Uncharacterized FAD-de 97.7 0.0017 3.8E-08 65.7 16.3 46 292-347 438-483 (486)
211 COG1252 Ndh NADH dehydrogenase 97.7 5.4E-05 1.2E-09 76.7 5.6 97 109-232 155-265 (405)
212 PRK11749 dihydropyrimidine deh 97.7 0.00014 3.1E-09 75.8 8.9 167 108-348 272-452 (457)
213 PLN02268 probable polyamine ox 97.6 5.3E-05 1.2E-09 78.3 4.8 36 110-145 1-36 (435)
214 PRK06475 salicylate hydroxylas 97.6 5.7E-05 1.2E-09 77.3 4.7 36 109-144 2-37 (400)
215 PLN00093 geranylgeranyl diphos 97.6 6.7E-05 1.4E-09 78.0 5.2 34 109-142 39-72 (450)
216 PRK07045 putative monooxygenas 97.6 5.8E-05 1.3E-09 76.8 4.7 36 109-144 5-40 (388)
217 PRK07233 hypothetical protein; 97.6 5.9E-05 1.3E-09 77.6 4.3 35 111-145 1-35 (434)
218 PRK08013 oxidoreductase; Provi 97.6 7.2E-05 1.6E-09 76.5 4.9 35 109-143 3-37 (400)
219 TIGR02360 pbenz_hydroxyl 4-hyd 97.5 7.7E-05 1.7E-09 76.1 4.5 35 109-143 2-36 (390)
220 PRK12778 putative bifunctional 97.5 0.00049 1.1E-08 76.3 10.9 167 108-348 569-750 (752)
221 KOG2495 NADH-dehydrogenase (ub 97.5 4.9E-05 1.1E-09 75.9 2.7 99 109-231 218-331 (491)
222 PRK05335 tRNA (uracil-5-)-meth 97.5 8.9E-05 1.9E-09 75.6 4.6 36 109-144 2-37 (436)
223 TIGR00562 proto_IX_ox protopor 97.5 8.5E-05 1.8E-09 77.3 4.6 37 109-145 2-42 (462)
224 PRK12814 putative NADPH-depend 97.5 0.00066 1.4E-08 73.9 11.2 166 108-348 322-501 (652)
225 TIGR01988 Ubi-OHases Ubiquinon 97.5 0.00011 2.4E-09 74.3 4.7 33 111-143 1-33 (385)
226 PRK12416 protoporphyrinogen ox 97.5 0.00011 2.3E-09 76.8 4.4 37 109-145 1-43 (463)
227 PRK08243 4-hydroxybenzoate 3-m 97.4 0.00012 2.6E-09 74.7 4.5 35 109-143 2-36 (392)
228 PLN02529 lysine-specific histo 97.4 0.00015 3.2E-09 79.2 5.2 37 107-143 158-194 (738)
229 TIGR02733 desat_CrtD C-3',4' d 97.4 0.00012 2.7E-09 76.9 4.6 36 110-145 2-37 (492)
230 PRK06185 hypothetical protein; 97.4 0.00015 3.2E-09 74.2 4.8 35 109-143 6-40 (407)
231 PLN02576 protoporphyrinogen ox 97.4 0.00014 3E-09 76.5 4.8 37 109-145 12-49 (496)
232 PRK07538 hypothetical protein; 97.4 0.00014 3E-09 74.8 4.4 34 111-144 2-35 (413)
233 KOG4716 Thioredoxin reductase 97.4 0.00017 3.7E-09 70.0 4.4 132 65-232 168-303 (503)
234 COG0445 GidA Flavin-dependent 97.4 0.00016 3.5E-09 74.5 4.4 34 109-142 4-37 (621)
235 TIGR02731 phytoene_desat phyto 97.4 0.00015 3.2E-09 75.4 4.3 35 111-145 1-35 (453)
236 PRK12409 D-amino acid dehydrog 97.4 0.00016 3.6E-09 74.0 4.5 34 110-143 2-35 (410)
237 PRK13977 myosin-cross-reactive 97.4 0.00023 4.9E-09 75.1 5.6 41 105-145 18-62 (576)
238 TIGR02734 crtI_fam phytoene de 97.4 0.00014 3E-09 76.8 4.0 34 112-145 1-34 (502)
239 PRK06617 2-octaprenyl-6-methox 97.4 0.00018 3.9E-09 72.9 4.6 32 110-141 2-33 (374)
240 COG2907 Predicted NAD/FAD-bind 97.4 0.00017 3.6E-09 70.4 4.0 36 109-145 8-43 (447)
241 COG1232 HemY Protoporphyrinoge 97.4 0.00016 3.5E-09 74.3 4.1 36 110-145 1-38 (444)
242 COG0492 TrxB Thioredoxin reduc 97.4 0.0014 3E-08 64.5 10.5 97 109-232 143-241 (305)
243 TIGR03219 salicylate_mono sali 97.3 0.00019 4E-09 73.8 4.5 34 111-144 2-36 (414)
244 PLN02568 polyamine oxidase 97.3 0.00023 5.1E-09 75.5 5.2 38 108-145 4-46 (539)
245 PLN02172 flavin-containing mon 97.3 0.00058 1.3E-08 71.2 8.1 92 108-235 203-294 (461)
246 PLN02927 antheraxanthin epoxid 97.3 0.00022 4.8E-09 76.9 4.6 35 108-142 80-114 (668)
247 PRK01438 murD UDP-N-acetylmura 97.3 0.00028 6.1E-09 74.0 5.2 34 109-142 16-49 (480)
248 PF01266 DAO: FAD dependent ox 97.3 0.00023 5E-09 70.6 4.3 31 111-141 1-31 (358)
249 COG0665 DadA Glycine/D-amino a 97.3 0.00027 5.9E-09 71.6 4.7 35 108-142 3-37 (387)
250 PLN02328 lysine-specific histo 97.2 0.00035 7.7E-09 76.8 5.2 38 107-144 236-273 (808)
251 PRK11259 solA N-methyltryptoph 97.2 0.00032 6.9E-09 70.8 4.6 34 109-142 3-36 (376)
252 COG1231 Monoamine oxidase [Ami 97.2 0.00042 9E-09 70.2 5.2 40 107-146 5-44 (450)
253 PF12831 FAD_oxidored: FAD dep 97.2 0.00029 6.4E-09 72.8 4.3 35 111-145 1-35 (428)
254 TIGR00031 UDP-GALP_mutase UDP- 97.2 0.00036 7.8E-09 70.6 4.8 36 110-145 2-37 (377)
255 PLN02612 phytoene desaturase 97.2 0.00047 1E-08 73.8 5.4 38 107-144 91-128 (567)
256 PTZ00367 squalene epoxidase; P 97.1 0.00048 1E-08 73.5 5.1 34 109-142 33-66 (567)
257 PF13434 K_oxygenase: L-lysine 97.1 0.00044 9.5E-09 69.3 4.5 39 110-148 3-42 (341)
258 PRK12779 putative bifunctional 97.1 0.0012 2.6E-08 74.5 8.5 167 108-348 446-627 (944)
259 PRK08294 phenol 2-monooxygenas 97.1 0.00054 1.2E-08 74.3 5.5 36 109-144 32-68 (634)
260 TIGR02732 zeta_caro_desat caro 97.1 0.00039 8.5E-09 72.8 4.2 35 111-145 1-35 (474)
261 TIGR01989 COQ6 Ubiquinone bios 97.1 0.00047 1E-08 71.4 4.7 32 111-142 2-37 (437)
262 COG4529 Uncharacterized protei 97.1 0.0025 5.5E-08 65.2 9.7 37 109-145 1-40 (474)
263 TIGR03315 Se_ygfK putative sel 97.1 0.0027 5.9E-08 71.6 10.7 191 109-380 666-872 (1012)
264 TIGR01377 soxA_mon sarcosine o 97.1 0.00047 1E-08 69.7 4.2 33 111-143 2-34 (380)
265 PRK12266 glpD glycerol-3-phosp 97.1 0.00061 1.3E-08 72.0 5.0 36 108-143 5-40 (508)
266 PRK12769 putative oxidoreducta 97.1 0.0031 6.7E-08 68.8 10.5 166 108-348 467-652 (654)
267 TIGR01318 gltD_gamma_fam gluta 97.1 0.0026 5.7E-08 66.5 9.5 165 108-347 281-465 (467)
268 PRK11728 hydroxyglutarate oxid 97.0 0.00068 1.5E-08 69.2 4.6 33 110-142 3-37 (393)
269 TIGR02730 carot_isom carotene 97.0 0.00065 1.4E-08 71.6 4.4 35 111-145 2-36 (493)
270 PRK09853 putative selenate red 97.0 0.0027 5.9E-08 71.3 9.4 164 109-348 668-842 (1019)
271 KOG0685 Flavin-containing amin 97.0 0.0008 1.7E-08 68.4 4.5 37 109-145 21-58 (498)
272 PRK13369 glycerol-3-phosphate 97.0 0.00083 1.8E-08 70.9 4.9 36 108-143 5-40 (502)
273 PRK00711 D-amino acid dehydrog 97.0 0.00074 1.6E-08 69.2 4.4 33 111-143 2-34 (416)
274 TIGR03364 HpnW_proposed FAD de 97.0 0.00076 1.7E-08 67.9 4.4 32 111-142 2-33 (365)
275 PLN02676 polyamine oxidase 96.9 0.00089 1.9E-08 70.4 4.9 37 109-145 26-63 (487)
276 PRK08255 salicylyl-CoA 5-hydro 96.9 0.00083 1.8E-08 74.5 4.4 34 111-144 2-37 (765)
277 PRK08274 tricarballylate dehyd 96.9 0.0011 2.3E-08 69.4 4.7 34 109-142 4-37 (466)
278 PRK06996 hypothetical protein; 96.9 0.0012 2.7E-08 67.4 5.0 34 109-142 11-48 (398)
279 PRK06567 putative bifunctional 96.8 0.019 4.1E-07 64.2 14.2 21 328-348 750-770 (1028)
280 PLN03000 amine oxidase 96.8 0.0012 2.7E-08 72.8 5.0 37 108-144 183-219 (881)
281 TIGR01372 soxA sarcosine oxida 96.8 0.0063 1.4E-07 69.4 10.7 151 109-348 317-472 (985)
282 PRK01747 mnmC bifunctional tRN 96.8 0.0013 2.7E-08 72.0 4.9 33 110-142 261-293 (662)
283 PRK13984 putative oxidoreducta 96.8 0.0064 1.4E-07 65.8 10.3 167 109-348 418-602 (604)
284 KOG2614 Kynurenine 3-monooxyge 96.8 0.0013 2.9E-08 65.8 4.5 36 109-144 2-37 (420)
285 PF00890 FAD_binding_2: FAD bi 96.8 0.0012 2.5E-08 67.9 4.2 33 111-143 1-33 (417)
286 TIGR03329 Phn_aa_oxid putative 96.8 0.0018 3.9E-08 67.6 5.5 34 109-142 24-59 (460)
287 PRK08401 L-aspartate oxidase; 96.7 0.0014 3.1E-08 68.5 4.5 33 110-142 2-34 (466)
288 PRK07121 hypothetical protein; 96.7 0.0024 5.1E-08 67.3 6.0 36 109-144 20-55 (492)
289 TIGR01317 GOGAT_sm_gam glutama 96.7 0.0085 1.8E-07 63.0 10.1 48 291-348 431-479 (485)
290 PRK06481 fumarate reductase fl 96.7 0.002 4.3E-08 68.1 5.2 36 109-144 61-96 (506)
291 PRK11101 glpA sn-glycerol-3-ph 96.7 0.0018 3.8E-08 69.2 4.9 34 109-142 6-39 (546)
292 KOG1298 Squalene monooxygenase 96.7 0.006 1.3E-07 60.6 8.0 33 109-141 45-77 (509)
293 TIGR01813 flavo_cyto_c flavocy 96.7 0.0016 3.4E-08 67.5 4.3 34 111-144 1-35 (439)
294 PRK08641 sdhA succinate dehydr 96.7 0.0017 3.7E-08 69.9 4.4 55 291-348 356-411 (589)
295 PRK12809 putative oxidoreducta 96.6 0.018 3.9E-07 62.7 12.0 166 108-348 450-635 (639)
296 PRK12775 putative trifunctiona 96.6 0.0084 1.8E-07 68.4 9.6 167 108-348 570-755 (1006)
297 TIGR01373 soxB sarcosine oxida 96.6 0.0029 6.3E-08 64.8 5.2 34 109-142 30-65 (407)
298 PLN02464 glycerol-3-phosphate 96.5 0.0027 5.7E-08 68.9 4.8 34 109-142 71-104 (627)
299 PF13434 K_oxygenase: L-lysine 96.5 0.0036 7.8E-08 62.7 5.2 36 109-144 190-227 (341)
300 COG0562 Glf UDP-galactopyranos 96.4 0.0038 8.2E-08 60.6 4.5 36 110-145 2-37 (374)
301 PRK12842 putative succinate de 96.4 0.0039 8.4E-08 67.0 5.1 36 109-144 9-44 (574)
302 PTZ00363 rab-GDP dissociation 96.4 0.0042 9E-08 64.4 5.1 37 109-145 4-40 (443)
303 PF00732 GMC_oxred_N: GMC oxid 96.4 0.0038 8.3E-08 60.9 4.6 35 111-145 2-37 (296)
304 PRK12837 3-ketosteroid-delta-1 96.3 0.0035 7.5E-08 66.4 4.2 34 109-143 7-40 (513)
305 TIGR01320 mal_quin_oxido malat 96.3 0.0037 8E-08 65.7 4.1 32 111-142 2-35 (483)
306 TIGR01812 sdhA_frdA_Gneg succi 96.3 0.0037 7.9E-08 67.1 4.1 56 291-348 343-403 (566)
307 PF13241 NAD_binding_7: Putati 96.3 0.0053 1.1E-07 50.3 4.1 34 109-142 7-40 (103)
308 PRK05257 malate:quinone oxidor 96.2 0.0046 1E-07 65.1 4.5 35 109-143 5-41 (494)
309 PRK07804 L-aspartate oxidase; 96.2 0.0052 1.1E-07 65.5 4.9 35 109-143 16-50 (541)
310 KOG1276 Protoporphyrinogen oxi 96.2 0.005 1.1E-07 61.9 4.4 37 109-145 11-49 (491)
311 COG1004 Ugd Predicted UDP-gluc 96.2 0.006 1.3E-07 61.0 4.8 32 111-142 2-33 (414)
312 COG1251 NirB NAD(P)H-nitrite r 96.2 0.006 1.3E-07 65.3 5.1 101 109-232 145-246 (793)
313 PLN02976 amine oxidase 96.2 0.0052 1.1E-07 70.7 4.8 36 109-144 693-728 (1713)
314 PTZ00139 Succinate dehydrogena 96.2 0.0052 1.1E-07 66.5 4.5 35 109-143 29-63 (617)
315 PRK07057 sdhA succinate dehydr 96.1 0.0047 1E-07 66.6 4.1 34 109-142 12-45 (591)
316 KOG2311 NAD/FAD-utilizing prot 96.1 0.0055 1.2E-07 62.3 4.2 33 109-141 28-60 (679)
317 PRK07573 sdhA succinate dehydr 96.1 0.0061 1.3E-07 66.3 4.9 35 109-143 35-69 (640)
318 PRK12834 putative FAD-binding 96.1 0.0058 1.3E-07 65.3 4.7 34 109-142 4-37 (549)
319 KOG2415 Electron transfer flav 96.1 0.0046 9.9E-08 61.9 3.5 37 109-145 76-118 (621)
320 PF04820 Trp_halogenase: Trypt 96.1 0.0043 9.3E-08 64.7 3.6 34 111-144 1-37 (454)
321 COG0579 Predicted dehydrogenas 96.1 0.0058 1.3E-07 62.6 4.4 37 108-144 2-40 (429)
322 PRK07803 sdhA succinate dehydr 96.1 0.0048 1E-07 67.0 4.0 55 291-348 392-448 (626)
323 PRK06854 adenylylsulfate reduc 96.1 0.0054 1.2E-07 66.3 4.1 49 292-348 371-432 (608)
324 COG3634 AhpF Alkyl hydroperoxi 96.1 0.022 4.9E-07 55.9 7.8 158 108-347 353-514 (520)
325 PRK05329 anaerobic glycerol-3- 96.0 0.0067 1.5E-07 62.5 4.5 34 109-142 2-35 (422)
326 PRK06452 sdhA succinate dehydr 96.0 0.0057 1.2E-07 65.6 4.0 57 291-348 347-404 (566)
327 PRK07843 3-ketosteroid-delta-1 96.0 0.0066 1.4E-07 65.0 4.4 36 109-144 7-42 (557)
328 PRK09078 sdhA succinate dehydr 96.0 0.0061 1.3E-07 65.8 4.1 34 109-142 12-45 (598)
329 PRK12835 3-ketosteroid-delta-1 96.0 0.0086 1.9E-07 64.4 5.2 36 109-144 11-46 (584)
330 TIGR01811 sdhA_Bsu succinate d 96.0 0.0053 1.1E-07 66.3 3.4 54 291-347 371-425 (603)
331 PTZ00383 malate:quinone oxidor 95.9 0.008 1.7E-07 63.2 4.6 35 109-143 45-81 (497)
332 PLN00128 Succinate dehydrogena 95.9 0.0069 1.5E-07 65.7 4.1 34 109-142 50-83 (635)
333 PRK12844 3-ketosteroid-delta-1 95.9 0.0075 1.6E-07 64.6 4.3 35 109-143 6-40 (557)
334 TIGR02061 aprA adenosine phosp 95.9 0.0074 1.6E-07 65.1 4.3 44 297-348 400-443 (614)
335 PRK06719 precorrin-2 dehydroge 95.9 0.011 2.4E-07 52.4 4.7 33 108-140 12-44 (157)
336 KOG1346 Programmed cell death 95.9 0.011 2.4E-07 59.1 5.1 100 109-232 347-452 (659)
337 PRK12839 hypothetical protein; 95.9 0.0097 2.1E-07 63.9 5.1 36 109-144 8-43 (572)
338 PRK08958 sdhA succinate dehydr 95.9 0.0073 1.6E-07 65.0 4.1 33 110-142 8-40 (588)
339 PRK13339 malate:quinone oxidor 95.9 0.01 2.2E-07 62.4 5.0 35 109-143 6-42 (497)
340 PRK06134 putative FAD-binding 95.9 0.012 2.6E-07 63.3 5.7 36 109-144 12-47 (581)
341 KOG2404 Fumarate reductase, fl 95.9 0.033 7.2E-07 54.2 8.0 34 111-144 11-44 (477)
342 PRK12771 putative glutamate sy 95.8 0.05 1.1E-06 58.3 10.3 166 108-348 266-444 (564)
343 PRK06175 L-aspartate oxidase; 95.8 0.0099 2.1E-07 61.6 4.6 55 291-347 332-387 (433)
344 PRK12843 putative FAD-binding 95.8 0.013 2.9E-07 62.9 5.7 36 109-144 16-51 (578)
345 PRK06069 sdhA succinate dehydr 95.8 0.0076 1.6E-07 64.8 3.8 56 291-348 353-415 (577)
346 PRK08275 putative oxidoreducta 95.8 0.0084 1.8E-07 64.2 4.1 49 291-348 357-405 (554)
347 PRK08626 fumarate reductase fl 95.8 0.0082 1.8E-07 65.4 4.1 57 291-348 373-430 (657)
348 PRK05945 sdhA succinate dehydr 95.8 0.0088 1.9E-07 64.3 4.2 57 291-348 352-414 (575)
349 TIGR01470 cysG_Nterm siroheme 95.8 0.013 2.8E-07 54.3 4.8 34 109-142 9-42 (205)
350 PRK08071 L-aspartate oxidase; 95.7 0.011 2.3E-07 62.7 4.5 55 291-347 333-388 (510)
351 TIGR02462 pyranose_ox pyranose 95.7 0.011 2.3E-07 62.8 4.5 35 111-145 2-36 (544)
352 PF01210 NAD_Gly3P_dh_N: NAD-d 95.7 0.011 2.5E-07 52.2 4.0 32 111-142 1-32 (157)
353 TIGR00551 nadB L-aspartate oxi 95.7 0.01 2.2E-07 62.5 4.0 55 291-347 334-389 (488)
354 PRK06263 sdhA succinate dehydr 95.6 0.01 2.3E-07 63.3 4.1 55 291-348 349-404 (543)
355 PRK02106 choline dehydrogenase 95.6 0.014 3.1E-07 62.5 5.0 35 109-143 5-40 (560)
356 PRK07395 L-aspartate oxidase; 95.6 0.016 3.4E-07 62.0 5.1 34 109-143 9-42 (553)
357 PLN02815 L-aspartate oxidase 95.5 0.013 2.7E-07 63.2 4.1 55 291-347 378-433 (594)
358 PRK12845 3-ketosteroid-delta-1 95.5 0.016 3.4E-07 62.1 4.8 35 109-144 16-50 (564)
359 KOG0404 Thioredoxin reductase 95.4 0.05 1.1E-06 50.4 7.0 158 109-348 157-319 (322)
360 PF13738 Pyr_redox_3: Pyridine 95.3 0.024 5.2E-07 51.8 4.9 34 109-142 167-200 (203)
361 PF00743 FMO-like: Flavin-bind 95.3 0.043 9.4E-07 58.3 7.4 37 108-144 182-218 (531)
362 PRK06718 precorrin-2 dehydroge 95.3 0.023 5E-07 52.5 4.6 34 108-141 9-42 (202)
363 PRK09231 fumarate reductase fl 95.2 0.016 3.5E-07 62.4 3.8 56 291-348 359-415 (582)
364 TIGR01176 fum_red_Fp fumarate 95.2 0.016 3.5E-07 62.2 3.7 56 291-348 358-414 (580)
365 PRK13800 putative oxidoreducta 95.2 0.018 3.9E-07 65.2 4.2 49 291-348 362-410 (897)
366 PTZ00306 NADH-dependent fumara 95.2 0.022 4.9E-07 66.1 5.0 36 109-144 409-444 (1167)
367 COG0578 GlpA Glycerol-3-phosph 95.2 0.023 5E-07 59.6 4.5 37 108-144 11-47 (532)
368 PF03721 UDPG_MGDP_dh_N: UDP-g 95.1 0.018 3.9E-07 52.5 3.2 34 110-143 1-34 (185)
369 COG3075 GlpB Anaerobic glycero 95.1 0.024 5.2E-07 55.3 4.1 34 109-142 2-35 (421)
370 PRK08205 sdhA succinate dehydr 95.1 0.022 4.9E-07 61.3 4.4 57 291-348 357-419 (583)
371 PRK14106 murD UDP-N-acetylmura 95.1 0.026 5.7E-07 58.6 4.7 35 108-142 4-38 (450)
372 PF02737 3HCDH_N: 3-hydroxyacy 95.0 0.023 5E-07 51.5 3.6 34 111-144 1-34 (180)
373 PRK09077 L-aspartate oxidase; 94.9 0.022 4.7E-07 60.7 3.8 55 291-347 354-409 (536)
374 COG3486 IucD Lysine/ornithine 94.9 0.091 2E-06 52.9 7.8 42 107-148 3-45 (436)
375 TIGR01810 betA choline dehydro 94.9 0.026 5.6E-07 60.1 4.3 33 111-143 1-34 (532)
376 TIGR03378 glycerol3P_GlpB glyc 94.9 0.026 5.7E-07 57.8 4.2 32 111-142 2-33 (419)
377 COG1053 SdhA Succinate dehydro 94.9 0.028 6.1E-07 59.9 4.4 35 109-143 6-40 (562)
378 COG0569 TrkA K+ transport syst 94.8 0.03 6.4E-07 52.7 3.8 33 110-142 1-33 (225)
379 COG1206 Gid NAD(FAD)-utilizing 94.8 0.024 5.2E-07 55.3 3.1 34 109-142 3-36 (439)
380 PRK02705 murD UDP-N-acetylmura 94.7 0.031 6.6E-07 58.3 4.2 34 111-144 2-35 (459)
381 PRK07512 L-aspartate oxidase; 94.7 0.028 6.2E-07 59.5 4.0 56 291-348 342-398 (513)
382 PRK06854 adenylylsulfate reduc 94.7 0.044 9.6E-07 59.3 5.4 34 110-143 12-47 (608)
383 KOG2852 Possible oxidoreductas 94.6 0.015 3.2E-07 55.7 1.4 36 107-142 8-49 (380)
384 PRK07066 3-hydroxybutyryl-CoA 94.6 0.044 9.6E-07 54.3 4.7 35 109-143 7-41 (321)
385 COG2303 BetA Choline dehydroge 94.6 0.046 9.9E-07 58.3 5.1 34 109-142 7-40 (542)
386 PLN02852 ferredoxin-NADP+ redu 94.5 0.16 3.4E-06 53.5 8.8 49 291-348 374-422 (491)
387 PRK11064 wecC UDP-N-acetyl-D-m 94.3 0.044 9.5E-07 56.5 4.1 35 109-143 3-37 (415)
388 PF01262 AlaDh_PNT_C: Alanine 94.3 0.056 1.2E-06 48.4 4.3 34 109-142 20-53 (168)
389 TIGR02485 CobZ_N-term precorri 94.2 0.029 6.3E-07 58.0 2.7 30 114-143 1-30 (432)
390 PRK07819 3-hydroxybutyryl-CoA 94.2 0.054 1.2E-06 52.9 4.4 36 109-144 5-40 (286)
391 PRK07530 3-hydroxybutyryl-CoA 94.2 0.053 1.2E-06 53.0 4.3 35 109-143 4-38 (292)
392 PF01488 Shikimate_DH: Shikima 94.0 0.075 1.6E-06 45.7 4.4 34 109-142 12-46 (135)
393 PRK08275 putative oxidoreducta 93.9 0.078 1.7E-06 56.8 5.2 34 110-143 10-45 (554)
394 PRK06249 2-dehydropantoate 2-r 93.9 0.076 1.6E-06 52.5 4.8 34 109-142 5-38 (313)
395 PRK08293 3-hydroxybutyryl-CoA 93.9 0.068 1.5E-06 52.1 4.4 35 109-143 3-37 (287)
396 PRK06129 3-hydroxyacyl-CoA deh 93.7 0.064 1.4E-06 52.9 3.8 34 110-143 3-36 (308)
397 PRK05808 3-hydroxybutyryl-CoA 93.7 0.068 1.5E-06 51.9 4.0 35 109-143 3-37 (282)
398 PRK09260 3-hydroxybutyryl-CoA 93.6 0.066 1.4E-06 52.2 3.7 34 110-143 2-35 (288)
399 PRK05562 precorrin-2 dehydroge 93.5 0.11 2.3E-06 48.7 4.7 34 108-141 24-57 (223)
400 PLN02545 3-hydroxybutyryl-CoA 93.4 0.092 2E-06 51.4 4.4 35 109-143 4-38 (295)
401 PRK06035 3-hydroxyacyl-CoA deh 93.4 0.089 1.9E-06 51.4 4.2 35 109-143 3-37 (291)
402 PF02558 ApbA: Ketopantoate re 93.2 0.11 2.4E-06 45.1 4.2 31 112-142 1-31 (151)
403 PRK13800 putative oxidoreducta 93.2 0.11 2.3E-06 59.0 5.0 33 110-142 14-46 (897)
404 PRK04148 hypothetical protein; 93.1 0.071 1.5E-06 45.7 2.7 34 109-143 17-50 (134)
405 cd00401 AdoHcyase S-adenosyl-L 93.1 0.11 2.4E-06 53.2 4.6 35 108-142 201-235 (413)
406 PLN02785 Protein HOTHEAD 93.1 0.1 2.2E-06 56.1 4.5 34 109-143 55-88 (587)
407 PRK09231 fumarate reductase fl 93.0 0.16 3.6E-06 54.6 5.9 33 110-142 5-39 (582)
408 PRK06130 3-hydroxybutyryl-CoA 93.0 0.12 2.6E-06 50.9 4.5 34 109-142 4-37 (311)
409 PRK08229 2-dehydropantoate 2-r 92.9 0.11 2.5E-06 51.7 4.2 33 110-142 3-35 (341)
410 TIGR00518 alaDH alanine dehydr 92.8 0.12 2.6E-06 52.4 4.2 34 109-142 167-200 (370)
411 COG0686 Ald Alanine dehydrogen 92.8 0.1 2.2E-06 50.7 3.4 34 109-142 168-201 (371)
412 PRK09424 pntA NAD(P) transhydr 92.7 0.12 2.5E-06 54.5 4.1 34 109-142 165-198 (509)
413 TIGR02964 xanthine_xdhC xanthi 92.7 0.17 3.7E-06 48.2 5.0 35 109-143 100-134 (246)
414 PF13478 XdhC_C: XdhC Rossmann 92.6 0.1 2.3E-06 45.0 3.0 32 112-143 1-32 (136)
415 PRK06522 2-dehydropantoate 2-r 92.6 0.13 2.9E-06 50.2 4.1 32 111-142 2-33 (304)
416 TIGR03378 glycerol3P_GlpB glyc 92.5 0.77 1.7E-05 47.2 9.7 131 178-343 276-418 (419)
417 KOG2820 FAD-dependent oxidored 92.5 0.12 2.6E-06 50.8 3.5 34 109-142 7-40 (399)
418 cd01080 NAD_bind_m-THF_DH_Cycl 92.5 0.2 4.3E-06 44.9 4.7 33 109-141 44-77 (168)
419 cd01075 NAD_bind_Leu_Phe_Val_D 92.4 0.22 4.7E-06 46.0 5.1 35 108-142 27-61 (200)
420 COG3573 Predicted oxidoreducta 92.4 0.18 3.8E-06 49.5 4.5 35 109-143 5-39 (552)
421 PRK05708 2-dehydropantoate 2-r 92.2 0.16 3.5E-06 50.0 4.2 33 110-142 3-35 (305)
422 TIGR00936 ahcY adenosylhomocys 92.2 0.18 4E-06 51.5 4.7 35 108-142 194-228 (406)
423 PLN02695 GDP-D-mannose-3',5'-e 92.1 0.22 4.7E-06 50.5 5.1 36 107-142 19-55 (370)
424 PRK12921 2-dehydropantoate 2-r 92.0 0.16 3.5E-06 49.7 3.9 30 111-140 2-31 (305)
425 PRK08306 dipicolinate synthase 91.9 0.19 4.2E-06 49.3 4.3 35 108-142 151-185 (296)
426 PF00899 ThiF: ThiF family; I 91.9 0.18 4E-06 43.1 3.7 34 109-142 2-36 (135)
427 PRK14619 NAD(P)H-dependent gly 91.9 0.22 4.8E-06 49.1 4.8 34 109-142 4-37 (308)
428 PF00670 AdoHcyase_NAD: S-aden 91.8 0.18 3.9E-06 44.7 3.5 34 109-142 23-56 (162)
429 TIGR03026 NDP-sugDHase nucleot 91.8 0.15 3.3E-06 52.4 3.6 33 111-143 2-34 (411)
430 TIGR02853 spore_dpaA dipicolin 91.8 0.2 4.2E-06 49.0 4.2 35 108-142 150-184 (287)
431 PRK07804 L-aspartate oxidase; 91.8 0.25 5.4E-06 52.8 5.3 55 291-347 358-413 (541)
432 PRK01710 murD UDP-N-acetylmura 91.7 0.2 4.4E-06 52.2 4.5 34 109-142 14-47 (458)
433 PRK14618 NAD(P)H-dependent gly 91.7 0.24 5.1E-06 49.3 4.8 33 110-142 5-37 (328)
434 COG3486 IucD Lysine/ornithine 91.7 1.2 2.6E-05 45.1 9.5 120 109-232 187-343 (436)
435 PRK00094 gpsA NAD(P)H-dependen 91.6 0.19 4.1E-06 49.6 4.1 33 110-142 2-34 (325)
436 TIGR02354 thiF_fam2 thiamine b 91.6 0.24 5.1E-06 45.7 4.4 33 109-141 21-54 (200)
437 PRK08071 L-aspartate oxidase; 91.3 0.33 7.1E-06 51.5 5.6 34 109-143 3-36 (510)
438 PRK06263 sdhA succinate dehydr 91.2 0.35 7.6E-06 51.7 5.8 32 110-142 8-39 (543)
439 PRK05476 S-adenosyl-L-homocyst 91.2 0.27 5.8E-06 50.6 4.7 35 108-142 211-245 (425)
440 KOG2853 Possible oxidoreductas 91.2 0.18 3.9E-06 49.6 3.1 36 109-144 86-125 (509)
441 PRK09077 L-aspartate oxidase; 91.2 0.35 7.7E-06 51.5 5.7 33 110-143 9-41 (536)
442 PRK02472 murD UDP-N-acetylmura 91.2 0.27 5.9E-06 51.0 4.8 34 109-142 5-38 (447)
443 COG1648 CysG Siroheme synthase 91.1 0.32 6.9E-06 45.2 4.7 35 108-142 11-45 (210)
444 PF02254 TrkA_N: TrkA-N domain 91.1 0.25 5.4E-06 40.8 3.6 31 112-142 1-31 (116)
445 TIGR02061 aprA adenosine phosp 91.1 0.28 6.1E-06 53.1 4.9 32 111-142 1-36 (614)
446 TIGR01176 fum_red_Fp fumarate 91.0 0.39 8.5E-06 51.7 5.9 34 110-143 4-39 (580)
447 COG1748 LYS9 Saccharopine dehy 90.9 0.28 6.1E-06 49.7 4.3 34 109-142 1-35 (389)
448 cd01078 NAD_bind_H4MPT_DH NADP 90.8 0.34 7.5E-06 44.2 4.6 33 109-141 28-61 (194)
449 PF03446 NAD_binding_2: NAD bi 90.8 0.28 6.2E-06 43.5 3.9 34 109-142 1-34 (163)
450 KOG3923 D-aspartate oxidase [A 90.8 0.2 4.3E-06 48.4 3.0 34 109-142 3-43 (342)
451 PRK12475 thiamine/molybdopteri 90.8 0.3 6.5E-06 48.9 4.4 34 109-142 24-58 (338)
452 PRK04308 murD UDP-N-acetylmura 90.8 0.31 6.7E-06 50.6 4.8 35 109-143 5-39 (445)
453 TIGR00551 nadB L-aspartate oxi 90.7 0.44 9.5E-06 50.2 5.8 32 110-142 3-34 (488)
454 PLN02494 adenosylhomocysteinas 90.6 0.33 7.1E-06 50.4 4.6 35 108-142 253-287 (477)
455 KOG4254 Phytoene desaturase [C 90.5 0.2 4.4E-06 51.0 2.9 37 109-145 14-50 (561)
456 PRK03369 murD UDP-N-acetylmura 90.5 0.3 6.5E-06 51.4 4.4 33 109-141 12-44 (488)
457 PRK07531 bifunctional 3-hydrox 90.4 0.32 6.9E-06 51.4 4.5 34 110-143 5-38 (495)
458 PRK12549 shikimate 5-dehydroge 90.3 0.36 7.8E-06 47.1 4.5 34 109-142 127-161 (284)
459 TIGR02356 adenyl_thiF thiazole 90.2 0.39 8.6E-06 44.3 4.4 34 109-142 21-55 (202)
460 PF02826 2-Hacid_dh_C: D-isome 90.2 0.45 9.7E-06 42.9 4.7 37 107-143 34-70 (178)
461 cd05292 LDH_2 A subgroup of L- 90.2 0.35 7.6E-06 47.7 4.3 32 111-142 2-35 (308)
462 TIGR01763 MalateDH_bact malate 89.9 0.42 9E-06 47.1 4.6 33 110-142 2-35 (305)
463 cd05291 HicDH_like L-2-hydroxy 89.9 0.4 8.6E-06 47.3 4.4 33 110-142 1-35 (306)
464 TIGR01812 sdhA_frdA_Gneg succi 89.8 0.52 1.1E-05 50.6 5.7 33 111-143 1-33 (566)
465 PTZ00075 Adenosylhomocysteinas 89.8 0.43 9.3E-06 49.6 4.6 35 108-142 253-287 (476)
466 TIGR00561 pntA NAD(P) transhyd 89.7 0.36 7.8E-06 50.8 4.1 34 109-142 164-197 (511)
467 PLN02353 probable UDP-glucose 89.7 0.37 8E-06 50.4 4.2 33 111-143 3-37 (473)
468 PRK15116 sulfur acceptor prote 89.7 0.45 9.7E-06 45.9 4.5 34 109-142 30-64 (268)
469 PF01593 Amino_oxidase: Flavin 89.7 0.29 6.2E-06 49.4 3.4 27 119-145 1-27 (450)
470 cd01483 E1_enzyme_family Super 89.6 0.47 1E-05 40.9 4.2 32 111-142 1-33 (143)
471 PRK08401 L-aspartate oxidase; 89.6 0.55 1.2E-05 49.1 5.5 54 291-346 311-365 (466)
472 PRK14620 NAD(P)H-dependent gly 89.6 0.38 8.3E-06 47.7 4.1 32 111-142 2-33 (326)
473 PRK06223 malate dehydrogenase; 89.6 0.45 9.7E-06 46.8 4.5 34 110-143 3-37 (307)
474 PRK04690 murD UDP-N-acetylmura 89.6 0.39 8.5E-06 50.3 4.3 34 109-142 8-41 (468)
475 PRK15057 UDP-glucose 6-dehydro 89.5 0.32 7E-06 49.6 3.6 32 111-143 2-33 (388)
476 PRK08017 oxidoreductase; Provi 89.5 0.43 9.3E-06 45.0 4.3 34 109-142 2-36 (256)
477 COG2072 TrkA Predicted flavopr 89.5 0.68 1.5E-05 48.1 6.0 40 106-145 172-211 (443)
478 PRK15181 Vi polysaccharide bio 89.5 0.45 9.6E-06 47.6 4.5 34 109-142 15-49 (348)
479 PTZ00082 L-lactate dehydrogena 89.5 0.57 1.2E-05 46.5 5.2 35 109-143 6-41 (321)
480 PRK06452 sdhA succinate dehydr 89.4 0.67 1.4E-05 49.8 6.1 33 110-142 6-38 (566)
481 PRK07512 L-aspartate oxidase; 89.4 0.54 1.2E-05 49.9 5.3 33 109-143 9-41 (513)
482 KOG2665 Predicted FAD-dependen 89.4 0.28 6E-06 47.9 2.7 37 109-145 48-86 (453)
483 PRK06849 hypothetical protein; 89.4 0.47 1E-05 48.3 4.7 36 108-143 3-39 (389)
484 PRK09496 trkA potassium transp 89.3 0.42 9.1E-06 49.6 4.3 36 108-143 230-265 (453)
485 PRK08268 3-hydroxy-acyl-CoA de 89.2 0.46 9.9E-06 50.3 4.5 36 109-144 7-42 (507)
486 PRK07688 thiamine/molybdopteri 89.2 0.48 1E-05 47.4 4.5 34 109-142 24-58 (339)
487 cd05191 NAD_bind_amino_acid_DH 89.1 0.78 1.7E-05 35.9 4.8 32 109-140 23-55 (86)
488 cd01065 NAD_bind_Shikimate_DH 89.0 0.6 1.3E-05 40.6 4.5 34 109-142 19-53 (155)
489 PRK12826 3-ketoacyl-(acyl-carr 88.9 0.56 1.2E-05 43.9 4.6 36 107-142 4-40 (251)
490 PRK00066 ldh L-lactate dehydro 88.9 0.67 1.5E-05 45.9 5.3 34 109-142 6-41 (315)
491 PRK08626 fumarate reductase fl 88.9 0.72 1.6E-05 50.4 6.0 34 110-143 6-39 (657)
492 PRK06057 short chain dehydroge 88.9 0.53 1.1E-05 44.6 4.4 35 108-142 6-41 (255)
493 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.9 0.4 8.7E-06 50.6 3.8 36 109-144 5-40 (503)
494 TIGR01915 npdG NADPH-dependent 88.9 0.5 1.1E-05 44.1 4.1 32 111-142 2-34 (219)
495 PRK00421 murC UDP-N-acetylmura 88.8 0.46 1E-05 49.6 4.2 35 108-142 6-41 (461)
496 PRK09496 trkA potassium transp 88.8 0.41 9E-06 49.6 3.9 32 111-142 2-33 (453)
497 PRK05993 short chain dehydroge 88.8 0.61 1.3E-05 44.9 4.8 34 109-142 4-38 (277)
498 PRK01368 murD UDP-N-acetylmura 88.7 0.6 1.3E-05 48.7 4.9 32 109-141 6-37 (454)
499 COG0771 MurD UDP-N-acetylmuram 88.7 0.42 9E-06 49.4 3.6 35 109-143 7-41 (448)
500 PRK05653 fabG 3-ketoacyl-(acyl 88.5 0.64 1.4E-05 43.2 4.6 34 109-142 5-39 (246)
No 1
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=4.4e-53 Score=410.63 Aligned_cols=323 Identities=49% Similarity=0.758 Sum_probs=267.1
Q ss_pred CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561 105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
....+|+|||+|+|++|.++++.|...-|+|+||+++++|.|+|+||..+.|..+.+.+.+|++.+.. .+..++.++.
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r--~k~~~~~y~e 128 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIAR--KKNGEVKYLE 128 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhh--ccCCCceEEe
Confidence 34557899999999999999999999999999999999999999999999999999999999998842 2234789999
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS 264 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a 264 (441)
++...||++.+.|.++....+.. ..+..+.|||||+|+|++++++++||..+++++++.++||.+++.++.++++.+
T Consensus 129 Aec~~iDp~~k~V~~~s~t~~~~---~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a 205 (491)
T KOG2495|consen 129 AECTKIDPDNKKVHCRSLTADSS---DKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKA 205 (491)
T ss_pred cccEeecccccEEEEeeeccCCC---cceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999988644321 344688999999999999999999999999999999999999999887666543
Q ss_pred cC------------------CCCceeEeeC-------------------ceEEE-------EccCCcccC----------
Q 013561 265 EN------------------PGDTVQLFSK-------------------YFVIT-------ITLSFLVRL---------- 290 (441)
Q Consensus 265 ~~------------------~G~~~vE~a~-------------------~v~V~-------il~~~~~~l---------- 290 (441)
.. +|.+|||+|. .++|+ +|+.|+..+
T Consensus 206 ~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 206 ELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVR 285 (491)
T ss_pred hcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhh
Confidence 21 6899999982 24555 233332211
Q ss_pred ----------------------------------------------------------C--ceeeCCCcccCCCCCEEEe
Q 013561 291 ----------------------------------------------------------S--QIGVDEWLRAPSVEDVFAL 310 (441)
Q Consensus 291 ----------------------------------------------------------G--~I~Vd~~lqt~~~~~VfA~ 310 (441)
| ++.||++||+++.+||||+
T Consensus 286 ~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAi 365 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAI 365 (491)
T ss_pred ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEe
Confidence 5 7999999999999999999
Q ss_pred cccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhccccCCCcccc----cCCCCCCCceeecceeEEEecCCceeee
Q 013561 311 GDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSA----KDINLGDPFVYKHLGSMATVGRYKALVD 386 (441)
Q Consensus 311 GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~~~~~g~~~~~----~~~~~~~~f~~~~~g~~~~lG~~~av~~ 386 (441)
|||+.. +..+++||+|.|||.++|+++.....-....+..+. ......+||+|+++|.+++||+.+++++
T Consensus 366 GDca~~------~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAd 439 (491)
T KOG2495|consen 366 GDCADQ------RGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIAD 439 (491)
T ss_pred cccccc------ccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhc
Confidence 999943 236779999999999999999865542111010010 0011139999999999999999999999
Q ss_pred cccccCCCCeEEccHHHHHHHHHHHHhhcCCcchhHHhHHHHHHHhccCCCCCCC
Q 013561 387 LRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI 441 (441)
Q Consensus 387 ~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 441 (441)
++-+ +.+.+.|..+|++|+++|+.++.|||+|++|++||++.+|||||++++
T Consensus 440 l~~g---~~~~~~G~~s~~lWrS~Yls~~~S~R~R~lV~~dW~~~~~fGRd~s~i 491 (491)
T KOG2495|consen 440 LPVG---KMWVSAGGSSFWLWRSAYLSKLVSWRNRFLVAIDWEKTFFFGRDSSSI 491 (491)
T ss_pred CccC---CeeeeccchhhHHHHHHHHHHhhhhhhheeeeeheeeeEEeccccccC
Confidence 9743 348999999999999999999999999999999999999999999985
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=6.9e-51 Score=405.67 Aligned_cols=295 Identities=35% Similarity=0.578 Sum_probs=261.8
Q ss_pred CCCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA 185 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (441)
++++|||||||++|+.+|..|.+. +++||+||+++++.|.|+||+++.|.++.+++..+++++ +....++.|+++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~---~~~~~~v~~~~~ 78 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRAL---LRKSGNVQFVQG 78 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHH---hcccCceEEEEE
Confidence 367999999999999999999886 499999999999999999999999999999999999988 554557999999
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhc----
Q 013561 186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL---- 261 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~---- 261 (441)
+|++||.++++|++.+. .+++||+||||+|++++++++||..|+++++++++||.+++.++...+
T Consensus 79 ~V~~ID~~~k~V~~~~~-----------~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~ 147 (405)
T COG1252 79 EVTDIDRDAKKVTLADL-----------GEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS 147 (405)
T ss_pred EEEEEcccCCEEEeCCC-----------ccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998872 379999999999999999999999999999999999999999886322
Q ss_pred -----------ccccCCCCceeEeeC------------------ceEEE-------EccCCcccC---------------
Q 013561 262 -----------MLSENPGDTVQLFSK------------------YFVIT-------ITLSFLVRL--------------- 290 (441)
Q Consensus 262 -----------~~a~~~G~~~vE~a~------------------~v~V~-------il~~~~~~l--------------- 290 (441)
.+++ +|.+|||+|. +++|+ |||.|++++
T Consensus 148 ~~~~~~~~lti~IvG-gG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v 226 (405)
T COG1252 148 QEEDDRALLTIVIVG-GGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEV 226 (405)
T ss_pred ccccccceeEEEEEC-CChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEE
Confidence 2233 7999999981 12443 444444322
Q ss_pred ---------------------------------------------------CceeeCCCcccCCCCCEEEeccccccccc
Q 013561 291 ---------------------------------------------------SQIGVDEWLRAPSVEDVFALGDCAGFLEQ 319 (441)
Q Consensus 291 ---------------------------------------------------G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~ 319 (441)
|++.||++||++++|+|||+|||+.+.++
T Consensus 227 ~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~ 306 (405)
T COG1252 227 LLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP 306 (405)
T ss_pred EcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence 89999999999999999999999998764
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCCCceeecceeEEEecCCceeeecccccCCCCeEEc
Q 013561 320 TGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLA 399 (441)
Q Consensus 320 ~G~~~~p~~a~~A~~qg~~aA~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~g~~~~lG~~~av~~~~~~~~~~~~~~~ 399 (441)
.+.|++|+.|+|||+++|+||.+.+. |+ ++ +||+|++.|++++||.+.||+.+ +++.++
T Consensus 307 ---~p~P~tAQ~A~Qqg~~~a~ni~~~l~----g~-------~l-~~f~y~~~Gtl~~lG~~~av~~~------g~~~l~ 365 (405)
T COG1252 307 ---RPVPPTAQAAHQQGEYAAKNIKARLK----GK-------PL-KPFKYKDKGTLASLGDFSAVADL------GGVKLK 365 (405)
T ss_pred ---CCCCChhHHHHHHHHHHHHHHHHHhc----CC-------CC-CCCcccceEEEEEccCCceeEEe------cceeec
Confidence 47899999999999999999999996 76 54 99999999999999999999998 358999
Q ss_pred cHHHHHHHHHHHHhhcCCcchhHHhHHHHHHHhccCCCC
Q 013561 400 GFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDI 438 (441)
Q Consensus 400 G~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 438 (441)
|+++|++|+.+|+.++..+++++++..+|+..++++++.
T Consensus 366 G~~a~~~k~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 404 (405)
T COG1252 366 GFLAWLLKRAAYLYYLLGIRSRLAVALYWLTTYLTGRRS 404 (405)
T ss_pred cHHHHHHHHHHHHheecccCcHHHHHHHHhhhhhccccc
Confidence 999999999999999999999999999999999999875
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=386.35 Aligned_cols=309 Identities=48% Similarity=0.802 Sum_probs=250.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA 185 (441)
Q Consensus 106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (441)
.+++++|||||||+||+.+|+.|.+.+++|||||+++++.|.|++++...|..+.+++..+++.. +. ..++.|+.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~~-~~~~~~i~~ 82 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPA---LA-KLPNRYLRA 82 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHH---hc-cCCeEEEEE
Confidence 34577999999999999999999887899999999999999999999998887777666666554 22 346899999
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHh-----
Q 013561 186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLN----- 260 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~----- 260 (441)
+|++||.+++.|.+.....+. ....+..+++||+||||||+.|+.+++||..++++++++++++.++++.+..+
T Consensus 83 ~V~~Id~~~~~v~~~~~~~~~-~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~ 161 (424)
T PTZ00318 83 VVYDVDFEEKRVKCGVVSKSN-NANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERAS 161 (424)
T ss_pred EEEEEEcCCCEEEEecccccc-cccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999884311000 00011247999999999999999999999988999999999999988776432
Q ss_pred --------------cccccCCCCceeEeeC-------------------ceEEE-------EccCCcccC----------
Q 013561 261 --------------LMLSENPGDTVQLFSK-------------------YFVIT-------ITLSFLVRL---------- 290 (441)
Q Consensus 261 --------------~~~a~~~G~~~vE~a~-------------------~v~V~-------il~~~~~~l---------- 290 (441)
+.+.+ +|..|+|+|. +++|+ +++.+++.+
T Consensus 162 ~~~~~~~~~~~~~~vvVvG-gG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~ 240 (424)
T PTZ00318 162 LPTTSVEERKRLLHFVVVG-GGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRR 240 (424)
T ss_pred CCCCChHHHhccCEEEEEC-CCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHH
Confidence 22222 5677777662 23344 112111110
Q ss_pred ------------------------------------------------------CceeeCCCcccCCCCCEEEecccccc
Q 013561 291 ------------------------------------------------------SQIGVDEWLRAPSVEDVFALGDCAGF 316 (441)
Q Consensus 291 ------------------------------------------------------G~I~Vd~~lqt~~~~~VfA~GD~a~~ 316 (441)
|+|.||++||++++|||||+|||+.+
T Consensus 241 ~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~ 320 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAAN 320 (424)
T ss_pred CCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence 78999999997699999999999976
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCCCceeecceeEEEecCCceeeecccccCCCCe
Q 013561 317 LEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGI 396 (441)
Q Consensus 317 ~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~g~~~~lG~~~av~~~~~~~~~~~~ 396 (441)
.+ .+.|++++.|++||+++|+||.+.|. |++ + .+||.|...|++++||+++||+++ +++
T Consensus 321 ~~----~~~~~~~~~A~~qg~~~A~ni~~~l~----g~~------~-~~~~~~~~~g~~~~lG~~~av~~~------~~~ 379 (424)
T PTZ00318 321 EE----RPLPTLAQVASQQGVYLAKEFNNELK----GKP------M-SKPFVYRSLGSLAYLGNYSAIVQL------GAF 379 (424)
T ss_pred CC----CCCCCchHHHHHHHHHHHHHHHHHhc----CCC------C-CCCCeecCCceEEEecCCceEEEc------CCc
Confidence 42 24688999999999999999999986 551 2 399999999999999999999987 468
Q ss_pred EEccHHHHHHHHHHHHhhcCCcchhHHhHHHHHHHhccCCCCCCC
Q 013561 397 SLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI 441 (441)
Q Consensus 397 ~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 441 (441)
.++|++||++|+++|+.+++++++|++++.+|+.++||+||+.|+
T Consensus 380 ~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 424 (424)
T PTZ00318 380 DLSGFKALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424 (424)
T ss_pred eEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCccccC
Confidence 999999999999999999999999999999999999999999873
No 4
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=340.59 Aligned_cols=195 Identities=17% Similarity=0.155 Sum_probs=155.5
Q ss_pred ccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCC
Q 013561 27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKP 106 (441)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~ 106 (441)
-|||++++++ |++|++.|.+|||||||||||||+|||++|++|+. .+|+.|..+|+.|.|++|+ ++|.+|.+|..
T Consensus 1708 ~~nelvfk~~-wk~al~~ll~tnnfpeftgrvcpapcegactlgii-e~pv~iksie~aiid~af~---egwm~p~pp~~ 1782 (2142)
T KOG0399|consen 1708 KFNELVFKNQ-WKEALEQLLETNNFPEFTGRVCPAPCEGACTLGII-EPPVGIKSIECAIIDKAFE---EGWMKPCPPAF 1782 (2142)
T ss_pred cHHHHHHHHH-HHHHHHHHHhhCCCccccCccCCCCcCcceeeecc-cCCccccchhhHHHHHHHH---hcCCccCCccc
Confidence 5999999999 99999999999999999999999999999999986 5567888899999999998 89999999999
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS 186 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 186 (441)
.++++|+|||+|||||+||.+|.+.||.|||+||.++.+ ..++|+++...++ ...+++... +...++++|+.+.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g-gll~ygipnmkld----k~vv~rrv~-ll~~egi~f~tn~ 1856 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG-GLLMYGIPNMKLD----KFVVQRRVD-LLEQEGIRFVTNT 1856 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC-ceeeecCCccchh----HHHHHHHHH-HHHhhCceEEeec
Confidence 999999999999999999999999999999999999987 2333444433322 223444444 3445789997765
Q ss_pred EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcccccccccCHhHHHHHH
Q 013561 187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVKENAYFLREVNHAQEIR 254 (441)
Q Consensus 187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~~~~~~l~~~~~a~~~~ 254 (441)
-++-+ +.+.. ....+|++|+|+|+. |+.+++||.+ ++++.-|.++.
T Consensus 1857 eigk~-----vs~d~------------l~~~~daiv~a~gst~prdlpv~grd-----~kgv~fame~l 1903 (2142)
T KOG0399|consen 1857 EIGKH-----VSLDE------------LKKENDAIVLATGSTTPRDLPVPGRD-----LKGVHFAMEFL 1903 (2142)
T ss_pred ccccc-----ccHHH------------HhhccCeEEEEeCCCCCcCCCCCCcc-----ccccHHHHHHH
Confidence 54432 33222 245799999999986 8999999985 34444444444
No 5
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=2.2e-37 Score=341.98 Aligned_cols=191 Identities=14% Similarity=0.141 Sum_probs=138.4
Q ss_pred ccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhccccccccc---CCCCC
Q 013561 27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQEL---SYPGL 101 (441)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~---~~~~~ 101 (441)
-||+++++|+ |.+|+++|++|||||++||||||+ +||.+|+++ ..|++|+.+||+|.|++.+.... .+...
T Consensus 222 ~~i~~i~~g~-~~~A~~~i~~~np~p~~~GrVCp~~~~CE~~C~~~---~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~ 297 (944)
T PRK12779 222 EMLDLLGNGK-HREALELIESCNPLPNVTGRVCPQELQCQGVCTHT---KRPIEIGQLEWYLPQHEKLVNPNANERFAGR 297 (944)
T ss_pred HHHHHHHCCC-HHHHHHHHHHhCChhHHhcCcCCCccCHHHhccCC---CcCcchhHHHHHHHHHHHhhchhhhhccccc
Confidence 4999999999 999999999999999999999999 699999998 24788999999999964432211 11111
Q ss_pred -CCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCE
Q 013561 102 -EATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNS 180 (441)
Q Consensus 102 -~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v 180 (441)
.+-.+.++|||+|||||||||+||.+|++.||+|||||+.+.++ +++ .+|+++++.-...+.+..+.+. ..++
T Consensus 298 ~~~~~~~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G--G~l---~yGIP~~rlp~~vi~~~i~~l~-~~Gv 371 (944)
T PRK12779 298 ISPWAAAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG--GVL---RYGIPEFRLPNQLIDDVVEKIK-LLGG 371 (944)
T ss_pred ccccccCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC--ceE---EccCCCCcChHHHHHHHHHHHH-hhcC
Confidence 11112358999999999999999999999999999999998765 333 3455544322222333323233 3578
Q ss_pred EEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc-ccccc
Q 013561 181 YFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK-ENAYF 243 (441)
Q Consensus 181 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~-~~~~~ 243 (441)
.|..+..++. .+++++. ....||+||||||+. |+.+++||.+ +++++
T Consensus 372 ~f~~n~~vG~-----dit~~~l-----------~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~ 420 (944)
T PRK12779 372 RFVKNFVVGK-----TATLEDL-----------KAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMS 420 (944)
T ss_pred eEEEeEEecc-----EEeHHHh-----------ccccCCEEEEeCCCCCCCcCCCCCCcCcCcEE
Confidence 8887765543 3444332 245799999999994 8999999975 44544
No 6
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.8e-36 Score=312.60 Aligned_cols=192 Identities=19% Similarity=0.210 Sum_probs=135.8
Q ss_pred cccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCC
Q 013561 26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEA 103 (441)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~ 103 (441)
+-|+.++++|+ |.+|+++++++||||++||||||+ +||.+|.++.. ..|+.|..+||++.|++++ .++. +..
T Consensus 61 ~~~~~~~~~~~-~~~a~~~~~~~np~p~~~grvC~~~~~Ce~~C~r~~~-~~~v~I~~l~r~~~~~~~~---~~~~-~~~ 134 (464)
T PRK12831 61 PGFISKLKEGD-FEEAAKIIAKYNALPAVCGRVCPQESQCEGKCVLGIK-GEPVAIGKLERFVADWARE---NGID-LSE 134 (464)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHhCCchhhhhccCCCCCChHHHhcCCCC-CCCeehhHHHHHHHHHHHH---cCCC-CCC
Confidence 35999999999 999999999999999999999998 89999999965 4577888999999997766 3332 223
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCcccccc-chhhhhhhhcCCCCEEE
Q 013561 104 TKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAE-PVSRIQTSLSSDPNSYF 182 (441)
Q Consensus 104 ~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~v~~ 182 (441)
+.+.++++|+||||||||+++|..|++.|++|+|||+.+.++ +++ .+|.+.++.-.. .+....+.+. ..++.+
T Consensus 135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G--G~l---~~gip~~~l~~~~~~~~~~~~~~-~~gv~i 208 (464)
T PRK12831 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG--GVL---VYGIPEFRLPKETVVKKEIENIK-KLGVKI 208 (464)
T ss_pred CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC--Cee---eecCCCccCCccHHHHHHHHHHH-HcCCEE
Confidence 344568899999999999999999999999999999987654 222 112222110001 1111112122 246777
Q ss_pred EEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC-CcCCCCCCCcc-cccccc
Q 013561 183 YLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA-EPLTFGIKGVK-ENAYFL 244 (441)
Q Consensus 183 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs-~p~~~~ipG~~-~~~~~l 244 (441)
..+..++ +.+.+.+. ...+.||+||||||+ .|+.+++||.+ +++++.
T Consensus 209 ~~~~~v~-----~~v~~~~~----------~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~ 257 (464)
T PRK12831 209 ETNVVVG-----KTVTIDEL----------LEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSA 257 (464)
T ss_pred EcCCEEC-----CcCCHHHH----------HhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEH
Confidence 6665332 12222211 013579999999998 69999999975 455443
No 7
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=3.4e-34 Score=288.90 Aligned_cols=269 Identities=20% Similarity=0.254 Sum_probs=206.5
Q ss_pred cEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE
Q 013561 111 RVVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC 187 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 187 (441)
+|||||||+||+.+|.+|.+ .+++|||||+++++.|.++++....|....+++..+.++. + +..+++|+.++|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~-~~~gv~~~~~~v 76 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRL---A-RQAGARFVIAEA 76 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHH---H-HhcCCEEEEEEE
Confidence 59999999999999999964 4689999999999999998888877766555555555544 2 235788999999
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhc------
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL------ 261 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~------ 261 (441)
++||.++++|.+.++ .+++||+||||||+.|+.|++||..++++.+++++++.+.+..+...+
T Consensus 77 ~~id~~~~~V~~~~g-----------~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (364)
T TIGR03169 77 TGIDPDRRKVLLANR-----------PPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGT 145 (364)
T ss_pred EEEecccCEEEECCC-----------CcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCC
Confidence 999999998887653 368999999999999999999998788888999998887554443221
Q ss_pred ---ccccCCCCceeEeeCc-----------eEEEEc------cCCccc--------------------------------
Q 013561 262 ---MLSENPGDTVQLFSKY-----------FVITIT------LSFLVR-------------------------------- 289 (441)
Q Consensus 262 ---~~a~~~G~~~vE~a~~-----------v~V~il------~~~~~~-------------------------------- 289 (441)
.+.+ +|..++|+|.. .+|+++ +.+++.
T Consensus 146 ~~vvVvG-~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~ 224 (364)
T TIGR03169 146 KRLAVVG-GGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGALIL 224 (364)
T ss_pred ceEEEEC-CCHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEe
Confidence 1222 45555555410 122211 000000
Q ss_pred --------------------------------CCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHH
Q 013561 290 --------------------------------LSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGK 337 (441)
Q Consensus 290 --------------------------------lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~ 337 (441)
-|+|.||+++|++++|+|||+|||+.+.+ .+.|++++.|++||+
T Consensus 225 ~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~----~~~~~~~~~A~~~g~ 300 (364)
T TIGR03169 225 ADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD----APRPKAGVYAVRQAP 300 (364)
T ss_pred CCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCC----CCCCCchHHHHHhHH
Confidence 07899999999889999999999997643 135778999999999
Q ss_pred HHHHHHHHHhccccCCCcccccCCCCCCCceee-cceeEEEecCCceeeecccccCCCCeEEccHHHHHHHHHHHHhhcC
Q 013561 338 YLAELFNKKIGEQDGGKALSAKDINLGDPFVYK-HLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVL 416 (441)
Q Consensus 338 ~aA~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~-~~g~~~~lG~~~av~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~ 416 (441)
++|+||.+.|. |+ ++ ++|++. ..++++++|++.||++. .++.+.|+++|++|+.+...++.
T Consensus 301 ~~a~ni~~~l~----g~-------~~-~~~~~~~~~~~~~~~G~~~~v~~~------~~~~~~~~~~~~~k~~~~~~~~~ 362 (364)
T TIGR03169 301 ILAANLRASLR----GQ-------PL-RPFRPQRDYLQLLNTGDRRAVASW------GWIIGPGRWLWRLKDWIDRRFMR 362 (364)
T ss_pred HHHHHHHHHhc----CC-------CC-CCCcccccceeEEEcCCCcEEEee------cceeecCccHHHHHHHHhHHHHh
Confidence 99999999986 65 33 788864 56899999999999876 46899999999999988777664
Q ss_pred C
Q 013561 417 S 417 (441)
Q Consensus 417 ~ 417 (441)
.
T Consensus 363 ~ 363 (364)
T TIGR03169 363 R 363 (364)
T ss_pred c
Confidence 3
No 8
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=6.7e-36 Score=309.03 Aligned_cols=191 Identities=15% Similarity=0.118 Sum_probs=133.9
Q ss_pred cccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCc---CCCcccCccchhhhhcccccccccCCCC
Q 013561 26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIK---TTPHYQYHNAERIVEESESEYQELSYPG 100 (441)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~---~~~~~~~~~~e~~i~~~~~~~~~~~~~~ 100 (441)
.-|+.++.+|+ |.+|++.+.++||||++||||||+ +||.+|.++.+ ...++.|+.+++++.|+..+ .++..
T Consensus 49 ~~~~~~~~~g~-~~~A~~~~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~---~~~~~ 124 (449)
T TIGR01316 49 PEFIAKIQEGD-FKGAVDIIKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQ---HGIET 124 (449)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHh---cCCCc
Confidence 45999999999 999999999999999999999999 89999998751 34567888999999997654 23322
Q ss_pred CCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCE
Q 013561 101 LEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNS 180 (441)
Q Consensus 101 ~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v 180 (441)
.+.+.+.++++|+||||||||+++|..|++.|++|+|||+.+..+. .+.+++.......+ + +....+.+. ..++
T Consensus 125 ~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG-~l~~gip~~~~~~~-~---~~~~~~~l~-~~gv 198 (449)
T TIGR01316 125 EPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG-VVTYGIPEFRLPKE-I---VVTEIKTLK-KLGV 198 (449)
T ss_pred CCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc-EeeecCCCccCCHH-H---HHHHHHHHH-hCCc
Confidence 2223445678999999999999999999999999999999876541 11111111111111 1 111111122 3477
Q ss_pred EEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC-CcCCCCCCCcc-ccccc
Q 013561 181 YFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA-EPLTFGIKGVK-ENAYF 243 (441)
Q Consensus 181 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs-~p~~~~ipG~~-~~~~~ 243 (441)
+++.+.+++ +.+.+.. ....||+||||||+ .|+.+++||.+ ++++.
T Consensus 199 ~~~~~~~v~-----~~v~~~~------------~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~ 246 (449)
T TIGR01316 199 TFRMNFLVG-----KTATLEE------------LFSQYDAVFIGTGAGLPKLMNIPGEELCGVYS 246 (449)
T ss_pred EEEeCCccC-----CcCCHHH------------HHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEE
Confidence 787765432 2232221 13479999999998 68988999975 34443
No 9
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=3.2e-34 Score=313.81 Aligned_cols=191 Identities=18% Similarity=0.195 Sum_probs=134.9
Q ss_pred ccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561 27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT 104 (441)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~ 104 (441)
-|++++++|+ |.+|+++++++||||++||||||+ +||.+|++......+++++.+||++.|...+ ..+...+.+
T Consensus 351 ~~~~~~~~g~-~~~a~~~~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~---~~~~~~~~~ 426 (752)
T PRK12778 351 RFIKNIERGN-FLEAAKILKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERE---SGNISVPEV 426 (752)
T ss_pred HHHHHHHCCC-HHHHHHHHHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHH---hCCCCCCCC
Confidence 4999999999 999999999999999999999997 8999999986441567888999999986543 222222222
Q ss_pred CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561 105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
.+.++++|+||||||||++||..|++.|++|||||+.+.++ +++ .+|.++++.-...+.+..+.+. ..+++|..
T Consensus 427 ~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G--G~l---~~gip~~rlp~~~~~~~~~~l~-~~gv~~~~ 500 (752)
T PRK12778 427 AEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG--GVL---KYGIPEFRLPKKIVDVEIENLK-KLGVKFET 500 (752)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC--Cee---eecCCCCCCCHHHHHHHHHHHH-HCCCEEEC
Confidence 34568899999999999999999999999999999977554 222 1233332211111222222222 34778876
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC-CcCCCCCCCcc-ccccc
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA-EPLTFGIKGVK-ENAYF 243 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs-~p~~~~ipG~~-~~~~~ 243 (441)
+..++ +.+++++. ....||+||||||+ .|+.+++||.+ +++++
T Consensus 501 ~~~v~-----~~v~~~~l-----------~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~ 545 (752)
T PRK12778 501 DVIVG-----KTITIEEL-----------EEEGFKGIFIASGAGLPNFMNIPGENSNGVMS 545 (752)
T ss_pred CCEEC-----CcCCHHHH-----------hhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEE
Confidence 64432 22332221 24579999999998 59999999975 34443
No 10
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=2.8e-34 Score=313.23 Aligned_cols=189 Identities=14% Similarity=0.116 Sum_probs=133.3
Q ss_pred cccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC
Q 013561 26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK 105 (441)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~ 105 (441)
+-|++++.+|+ |.+|++++.++||||.+||||||++||.+|.++.. ..+++|..++|++.+++++.....+.. +..
T Consensus 460 p~yi~li~~g~-~~~A~~~I~~~nPlP~icGrVCph~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~~~~~~--~~~ 535 (1019)
T PRK09853 460 PEYIRLVGEGR-YAEALELIYQRNALPAITGHICDHQCQYNCTRLDY-DEAVNIRELKKVALEKGWDEYKQRWHK--PAG 535 (1019)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHhCChhhHhhCcCCchhHHHhcCCCC-CCCeeccHHHHHHHhhHHHhcccccCC--CCc
Confidence 45899999999 99999999999999999999999999999999965 557889999999999765532222211 112
Q ss_pred CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA 185 (441)
Q Consensus 106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (441)
+.++++|+||||||||+++|..|++.|++|||||+.+.++ +++. .+.+.++.-...+.+..+.+. ..++++..+
T Consensus 536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G--G~lr---~~IP~~Rlp~evL~~die~l~-~~GVe~~~g 609 (1019)
T PRK09853 536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG--GVVK---NIIPQFRIPAELIQHDIEFVK-AHGVKFEFG 609 (1019)
T ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC--ccee---eecccccccHHHHHHHHHHHH-HcCCEEEeC
Confidence 3568899999999999999999999999999999988765 2221 112222111111222222222 246788776
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcccccc
Q 013561 186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVKENAY 242 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~~~~~ 242 (441)
..+.++. ... ....||+||||||+. ++.+++||.+++++
T Consensus 610 t~Vdi~l-------e~L-----------~~~gYDaVILATGA~~~~~l~IpG~~~gV~ 649 (1019)
T PRK09853 610 CSPDLTV-------EQL-----------KNEGYDYVVVAIGADKNGGLKLEGGNQNVI 649 (1019)
T ss_pred ceeEEEh-------hhh-----------eeccCCEEEECcCCCCCCCCCCCCccCCce
Confidence 4332222 111 245699999999997 45567888755544
No 11
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=3.6e-34 Score=319.04 Aligned_cols=190 Identities=16% Similarity=0.126 Sum_probs=136.8
Q ss_pred cccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCC
Q 013561 26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEA 103 (441)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~ 103 (441)
.-||+++++|+ |.+|+++++++||||++||||||+ +||.+|+++.. ..|+.|+.+||++.|++++ .++..+
T Consensus 352 p~~~~~i~~g~-~~~A~~~i~~~np~p~~~grvCp~~~~Ce~~C~~~~~-~~pv~I~~ler~~~d~~~~---~~~~~~-- 424 (1006)
T PRK12775 352 PVFIRHVVVRD-FDGALEVIYEASIFPSICGRVCPQETQCEAQCIIAKK-HESVGIGRLERFVGDNARA---KPVKPP-- 424 (1006)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHhCChHHHhcCcCCCCCCHHHhCcCCCC-CCCeeecHHHHHHHHHHHH---cCCCCC--
Confidence 35999999999 999999999999999999999998 89999999965 4578899999999997765 333221
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561 104 TKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY 183 (441)
Q Consensus 104 ~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 183 (441)
+.+.++++|+|||||||||++|.+|++.|++|||||+.+..+ +++ ..|.+.+..-...+.+..+.+. ..+++|.
T Consensus 425 ~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G--G~l---~~gip~~rl~~e~~~~~~~~l~-~~Gv~~~ 498 (1006)
T PRK12775 425 RFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG--GVL---QYGIPSFRLPRDIIDREVQRLV-DIGVKIE 498 (1006)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc--cee---eccCCccCCCHHHHHHHHHHHH-HCCCEEE
Confidence 223357899999999999999999999999999999988664 222 1233332211112222222233 3478887
Q ss_pred EEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc-ccccc
Q 013561 184 LASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK-ENAYF 243 (441)
Q Consensus 184 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~-~~~~~ 243 (441)
.+.+++.+ +++.... ....||+||||||+. |+.+++||.+ ++++.
T Consensus 499 ~~~~vg~~-----~~~~~l~----------~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~ 545 (1006)
T PRK12775 499 TNKVIGKT-----FTVPQLM----------NDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYS 545 (1006)
T ss_pred eCCccCCc-----cCHHHHh----------hccCCCEEEEecCCCCCCCCCCCCcCCCCcEE
Confidence 77554322 2222210 024699999999995 8999999974 44443
No 12
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=6.8e-34 Score=295.90 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=134.1
Q ss_pred cccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC
Q 013561 26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK 105 (441)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~ 105 (441)
.-|+.++.+|+ |.+|++++.++||||.+||||||++||.+|.++.. ..++.|..++|++.|+... ..+..+..+.
T Consensus 65 ~~~~~~~~~~~-~~~a~~~~~~~~p~~~~~g~vC~~~Ce~~C~~~~~-~~~v~i~~l~r~~~~~~~~---~~~~~~~~~~ 139 (471)
T PRK12810 65 PEWNDLVYRGR-WEEAAERLHQTNNFPEFTGRVCPAPCEGACTLNIN-FGPVTIKNIERYIIDKAFE---EGWVKPDPPV 139 (471)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHhCChhHHhcCcCCchhHHhccCCCC-CCCccHHHHHHHHHHHHHH---cCCCCCCCCc
Confidence 45899999999 99999999999999999999999999999999964 5578899999999996654 3331222233
Q ss_pred CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA 185 (441)
Q Consensus 106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (441)
+..+++|+||||||||+++|..|++.|++|+|||+.++++ +.+ ..|.+.+..-...+....+.+. ..++.++.+
T Consensus 140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G--G~l---~~gip~~~~~~~~~~~~~~~~~-~~gv~~~~~ 213 (471)
T PRK12810 140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG--GLL---RYGIPDFKLEKEVIDRRIELME-AEGIEFRTN 213 (471)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC--cee---eecCCcccCCHHHHHHHHHHHH-hCCcEEEeC
Confidence 4457899999999999999999999999999999988764 221 1222222111111222222223 346777766
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc-cccc
Q 013561 186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK-ENAY 242 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~-~~~~ 242 (441)
..+..+... . .....||+||+|||+. ++.+++||.+ .+++
T Consensus 214 ~~v~~~~~~-----~------------~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~ 255 (471)
T PRK12810 214 VEVGKDITA-----E------------ELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVH 255 (471)
T ss_pred CEECCcCCH-----H------------HHHhhCCEEEEecCCCCCCcCCCCCccCCCcE
Confidence 554332111 0 1135799999999997 7788899864 3443
No 13
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=1.9e-33 Score=303.38 Aligned_cols=184 Identities=15% Similarity=0.148 Sum_probs=129.5
Q ss_pred ccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561 27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT 104 (441)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~ 104 (441)
-||+++++|+ |.+|+++|++|||||++||||||+ +||.+|+++.. ..++.|+.+|||+.|++++. ++....++
T Consensus 248 ~~~~~~~~g~-~~~A~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~-~~~v~I~~l~r~~~d~~~~~---~~~~~~~~ 322 (654)
T PRK12769 248 QWIELVKAGN-IDAAVELSHQTNSLPEITGRVCPQDRLCEGACTLRDE-YGAVTIGNIERYISDQALAK---GWRPDLSQ 322 (654)
T ss_pred HHHHHHHCCC-HHHHHHHHHHhCCchhHhcccCCCCCChHHhccCCCC-CCCeecCHHHHHHHHHHHHh---CCCCCCcc
Confidence 4999999999 999999999999999999999996 79999999965 45789999999999987763 33221112
Q ss_pred CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561 105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
.+.++++|+|||||||||++|..|++.|++|+|||+.+.++ +++ ..|.+.++.-...+.+..+.+. ..+++|..
T Consensus 323 ~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G--G~l---~~gip~~~l~~~~~~~~~~~~~-~~Gv~~~~ 396 (654)
T PRK12769 323 VTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG--GLL---TFGIPAFKLDKSLLARRREIFS-AMGIEFEL 396 (654)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--cee---eecCCCccCCHHHHHHHHHHHH-HCCeEEEC
Confidence 23457899999999999999999999999999999988664 222 1233322211111222222222 34677765
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK 238 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~ 238 (441)
+..++.+ +.+.. ....||+||+|||+. +..+++||.+
T Consensus 397 ~~~v~~~-----i~~~~------------~~~~~DavilAtGa~~~~~l~i~g~~ 434 (654)
T PRK12769 397 NCEVGKD-----ISLES------------LLEDYDAVFVGVGTYRSMKAGLPNED 434 (654)
T ss_pred CCEeCCc-----CCHHH------------HHhcCCEEEEeCCCCCCCCCCCCCCC
Confidence 5432211 11111 134799999999986 4566788764
No 14
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=2.2e-33 Score=307.70 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=128.5
Q ss_pred cccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC
Q 013561 26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK 105 (441)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~ 105 (441)
.-|++++.+|+ |.+|+++++++||||.+||||||++||.+|.++.. ..+++|..++|++.|++++.....+..+ ..
T Consensus 458 p~yi~~i~~g~-~~~A~~vi~~~nPlp~icGrVC~h~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~~~~~~~--~~ 533 (1012)
T TIGR03315 458 PEYIRLVGEKR-YLEALEVIYDKNPLPAITGTICDHQCQYKCTRLDY-DESVNIREMKKVAAEKGYDEYKTRWHKP--QG 533 (1012)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHhCChhhHhhCcCCcchHHHhcCCCC-CCCCcccHHHHHHHhhHHHhcCccCCCC--CC
Confidence 34899999999 99999999999999999999999999999999864 5578899999999997655322122211 12
Q ss_pred CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA 185 (441)
Q Consensus 106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (441)
..++++|+|||||||||+||..|++.|++|||||+++..+ +++. .+.+.+..-...+....+.+. ..++++..+
T Consensus 534 ~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG--G~l~---~~IP~~rlp~e~l~~~ie~l~-~~GVe~~~g 607 (1012)
T TIGR03315 534 KSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG--GVVK---NIIPEFRISAESIQKDIELVK-FHGVEFKYG 607 (1012)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC--ceee---ecccccCCCHHHHHHHHHHHH-hcCcEEEEe
Confidence 2457899999999999999999999999999999998764 2221 111121110111222212122 246777665
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCccc
Q 013561 186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVKE 239 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~~ 239 (441)
... .+.+... ....||+||||||+. +..+++||..+
T Consensus 608 ~~~-------d~~ve~l-----------~~~gYDaVIIATGA~~~~~l~I~G~~~ 644 (1012)
T TIGR03315 608 CSP-------DLTVAEL-----------KNQGYKYVILAIGAWKHGPLRLEGGGE 644 (1012)
T ss_pred ccc-------ceEhhhh-----------hcccccEEEECCCCCCCCCCCcCCCCc
Confidence 211 1122211 245799999999997 45557887543
No 15
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=5e-33 Score=284.16 Aligned_cols=184 Identities=17% Similarity=0.166 Sum_probs=144.7
Q ss_pred ccccCCCCCCCCCccccccccCCCcccCCCcccccc--cccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561 27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTT--HMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT 104 (441)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~--ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~ 104 (441)
.||++|++|+ |.+|+++|++||+||++||||||++ ||++|++++. ..+++|+.+++++.|.+++ ++|.....+
T Consensus 44 ~~~~lv~~g~-~~~a~~~i~~tn~~p~~~gRvcp~~~~ceg~cv~~~~-~~~v~i~~le~~i~d~~~~---~g~i~~~~~ 118 (457)
T COG0493 44 EPIGLVREGV-DHEAIKLIHKTNNLPAITGRVCPLGNLCEGACVLGIE-ELPVNIGALERAIGDKADR---EGWIPGELP 118 (457)
T ss_pred CHHHHHhcCC-cHHHHHHHHHhCCCccccCccCCCCCceeeeeeeccC-CCchhhhhHHHHHhhHHHH---hCCCCCCCC
Confidence 4889999999 9999999999999999999999998 9999999864 5578999999999998887 666555555
Q ss_pred CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561 105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
...+.++|+||||||||+++|..|++.||+||++|+.+..+ +++ .+|+++++.-...+++..+.+.+ .+++|..
T Consensus 119 ~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G--Gll---~yGIP~~kl~k~i~d~~i~~l~~-~Gv~~~~ 192 (457)
T COG0493 119 GSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG--GLL---LYGIPDFKLPKDILDRRLELLER-SGVEFKL 192 (457)
T ss_pred CCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc--eeE---EecCchhhccchHHHHHHHHHHH-cCeEEEE
Confidence 56778999999999999999999999999999999999876 332 34555554333334444443443 4588887
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK 238 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~ 238 (441)
+..++.+.+.+.+ ..+||++++|+|+. |+..++||.+
T Consensus 193 ~~~vG~~it~~~L-----------------~~e~Dav~l~~G~~~~~~l~i~g~d 230 (457)
T COG0493 193 NVRVGRDITLEEL-----------------LKEYDAVFLATGAGKPRPLDIPGED 230 (457)
T ss_pred cceECCcCCHHHH-----------------HHhhCEEEEeccccCCCCCCCCCcC
Confidence 7665544332222 34689999999975 8888999984
No 16
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=3.8e-32 Score=281.97 Aligned_cols=183 Identities=20% Similarity=0.242 Sum_probs=127.6
Q ss_pred ccccCCCCCCCCCccccccccCCCcccCCCcccccc--cccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561 27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTT--HMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT 104 (441)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~--ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~ 104 (441)
-|+.++++|+ |.+|++++.++||||++||||||++ ||..|.++.... ++.+..+++++.++++. ..+.. +.+
T Consensus 62 ~~~~~~~~~~-~~~a~~~~~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~-~v~i~~l~~~~~~~~~~---~~~~~-~~~ 135 (457)
T PRK11749 62 EFIRLIAEGN-LKGAAETILETNPLPAVCGRVCPQERLCEGACVRGKKGE-PVAIGRLERYITDWAME---TGWVL-FKR 135 (457)
T ss_pred HHHHHHHCCC-HHHHHHHHHHhCCchhhhcCcCCCccCHHHHhcCCCCCC-CcchHHHHHHHHHHHHh---cCCCC-CCC
Confidence 4999999999 9999999999999999999999998 999999875433 55777899998886654 22211 112
Q ss_pred CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561 105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
.+.++++|+||||||||+++|..|++.|++|+|||+.+.++ +++ ..+.+.+......+......+. ..++.+..
T Consensus 136 ~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g--G~l---~~gip~~~~~~~~~~~~~~~l~-~~gv~~~~ 209 (457)
T PRK11749 136 APKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG--GLL---RYGIPEFRLPKDIVDREVERLL-KLGVEIRT 209 (457)
T ss_pred CccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC--cEe---eccCCCccCCHHHHHHHHHHHH-HcCCEEEe
Confidence 23457899999999999999999999999999999998664 221 1122221110111122222233 24677766
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK 238 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~ 238 (441)
+..++ +.+.+.. ..+.||+||||||+. |+.+++||.+
T Consensus 210 ~~~v~-----~~v~~~~------------~~~~~d~vvlAtGa~~~~~~~i~G~~ 247 (457)
T PRK11749 210 NTEVG-----RDITLDE------------LRAGYDAVFIGTGAGLPRFLGIPGEN 247 (457)
T ss_pred CCEEC-----CccCHHH------------HHhhCCEEEEccCCCCCCCCCCCCcc
Confidence 65431 1222211 136799999999985 7777888864
No 17
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=4e-32 Score=291.97 Aligned_cols=184 Identities=14% Similarity=0.105 Sum_probs=132.3
Q ss_pred ccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561 27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT 104 (441)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~ 104 (441)
-||+++++|+ |.+|+++++++||||++||||||+ +||.+|+++.. ..++.|+.+|||+.|++++ ++|....++
T Consensus 231 ~~~~~~~~g~-~~~a~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~-~~~v~i~~l~r~~~d~~~~---~~~~~~~~~ 305 (639)
T PRK12809 231 DYIRLVQEGK-IIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDH-SGAVSIGNLERYITDTALA---MGWRPDVSK 305 (639)
T ss_pred HHHHHHHCCC-HHHHHHHHHHhCCcchhhcccCCCCCChHHhccCCCc-CCCcChhHHHHHHHHHHHH---hCCCCCCCc
Confidence 4999999999 999999999999999999999996 79999999965 4578899999999998876 444333223
Q ss_pred CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561 105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
.+.++++|+||||||+||++|..|++.|++|||||+.+.++ +++ .+|.+.++.-...+....+.+. ..++++..
T Consensus 306 ~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G--G~l---~~gip~~~l~~~~~~~~~~~~~-~~Gv~~~~ 379 (639)
T PRK12809 306 VVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG--GML---TFGIPPFKLDKTVLSQRREIFT-AMGIDFHL 379 (639)
T ss_pred ccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC--Cee---eccCCcccCCHHHHHHHHHHHH-HCCeEEEc
Confidence 33458999999999999999999999999999999998764 332 2233333211111221222222 35777765
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK 238 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~ 238 (441)
+...+. .+.+.. ....||+||+|||+. +..+++||.+
T Consensus 380 ~~~v~~-----~~~~~~------------l~~~~DaV~latGa~~~~~~~i~g~~ 417 (639)
T PRK12809 380 NCEIGR-----DITFSD------------LTSEYDAVFIGVGTYGMMRADLPHED 417 (639)
T ss_pred CCccCC-----cCCHHH------------HHhcCCEEEEeCCCCCCCCCCCCCCc
Confidence 543221 111111 135799999999987 4566788865
No 18
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=3e-32 Score=293.21 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=127.4
Q ss_pred cccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC
Q 013561 26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK 105 (441)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~ 105 (441)
+-|+.++.+|+ |.+|+++++++||||.+||||||++||..|.+... ..++.+..+++++.+++.+. .+...+.+.
T Consensus 115 ~~~~~~~~~g~-~~~a~~~~~~~~p~p~~~grvC~~~Ce~~C~r~~~-~~~v~i~~l~r~~~~~~~~~---~~~~~~~~~ 189 (652)
T PRK12814 115 PGFIAAIARGD-DREAIRIIKETIPLPGILGRICPAPCEEACRRHGV-DEPVSICALKRYAADRDMES---AERYIPERA 189 (652)
T ss_pred HHHHHHHHCCC-HHHHHHHHHhhCCccceeeCCcCchhhHHHcCCCC-CCCcchhHHHHHHHHHHHhc---CcccCCCCC
Confidence 45899999999 99999999999999999999999999999999854 44667888999998865432 111111223
Q ss_pred CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA 185 (441)
Q Consensus 106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (441)
+.++++|+|||+||||+++|..|++.|++|||||+.++++ +++ ..|.+.+......+....+.+. ..++.+..+
T Consensus 190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G--G~l---~~gip~~~~~~~~~~~~~~~l~-~~Gv~i~~~ 263 (652)
T PRK12814 190 PKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG--GMM---RYGIPRFRLPESVIDADIAPLR-AMGAEFRFN 263 (652)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC--cee---eecCCCCCCCHHHHHHHHHHHH-HcCCEEEeC
Confidence 3457899999999999999999999999999999998764 222 1122221110011111111122 246666655
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCc-CCCCCCCcc
Q 013561 186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEP-LTFGIKGVK 238 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p-~~~~ipG~~ 238 (441)
.+.+++ +.+.. ....||+||||||+.+ ..+++||.+
T Consensus 264 ~~v~~d-----v~~~~------------~~~~~DaVilAtGa~~~~~~~ipG~~ 300 (652)
T PRK12814 264 TVFGRD-----ITLEE------------LQKEFDAVLLAVGAQKASKMGIPGEE 300 (652)
T ss_pred CcccCc-----cCHHH------------HHhhcCEEEEEcCCCCCCCCCCCCcC
Confidence 543332 11111 1235999999999975 567888864
No 19
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=2.3e-32 Score=284.90 Aligned_cols=189 Identities=16% Similarity=0.187 Sum_probs=133.6
Q ss_pred cccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC
Q 013561 26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK 105 (441)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~ 105 (441)
.-|+.++.+|+ |.+|++++.++|+||.+||||||++||..|.++.. ..++.|..+||++.++..+ ..+..+..+.
T Consensus 65 ~~~~~~~~~g~-~~~a~~~~~~~~p~p~~~grvC~~~Ce~~C~~~~~-~~~v~I~~l~r~~~~~~~~---~~~~~~~~~~ 139 (485)
T TIGR01317 65 PEFNDLVFRGR-WKEALDRLHATNNFPEFTGRVCPAPCEGACTLGIS-EDPVGIKSIERIIIDKGFQ---EGWVQPRPPS 139 (485)
T ss_pred HHHHHHHHCCC-HHHHHHHHHhhCCchhHHhCcCChhhHHhccCCCC-CCCcchhHHHHHHHHHHHH---cCCCCCCCCc
Confidence 45899999999 99999999999999999999999999999999964 4567888999999886654 3343332223
Q ss_pred CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA 185 (441)
Q Consensus 106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (441)
+..+++|+|||+|++|+++|..|++.|++|+|||+.++++ +++ .+|.+.+..-...+....+.+. ..++.++.+
T Consensus 140 ~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g--G~l---~~gip~~~~~~~~~~~~~~~~~-~~Gv~~~~~ 213 (485)
T TIGR01317 140 KRTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG--GLL---MYGIPNMKLDKAIVDRRIDLLS-AEGIDFVTN 213 (485)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC--cee---eccCCCccCCHHHHHHHHHHHH-hCCCEEECC
Confidence 3446899999999999999999999999999999998654 222 1122221100011222222222 347777666
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc-cccc
Q 013561 186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK-ENAY 242 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~-~~~~ 242 (441)
..+..+...+ .....||+||+|||+. |..+++||.+ ++++
T Consensus 214 ~~v~~~~~~~-----------------~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~ 255 (485)
T TIGR01317 214 TEIGVDISAD-----------------ELKEQFDAVVLAGGATKPRDLPIPGRELKGIH 255 (485)
T ss_pred CEeCCccCHH-----------------HHHhhCCEEEEccCCCCCCcCCCCCcCCCCcE
Confidence 4433221110 1245799999999998 8888999875 3444
No 20
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=1e-31 Score=278.85 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=128.8
Q ss_pred cccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCC
Q 013561 26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEA 103 (441)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~ 103 (441)
.-|+.++++|+ |.+|++++.++||||.+||||||+ +||.+|.++.. ..|+.|+.+||++.|++.+ .++.....
T Consensus 61 ~~~~~~~~~g~-~~~a~~~~~~~np~~~~~grvC~~~~~Ce~~C~~~~~-~~~v~i~~l~r~~~~~~~~---~~~~~~~~ 135 (467)
T TIGR01318 61 PQWLQLVQEGR-IDEAAELSHQTNTLPEICGRVCPQDRLCEGACTLNDE-FGAVTIGNLERYITDTALA---MGWRPDLS 135 (467)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHhCCchHhhcccCCCCCChHHhCcCCCC-CCCccHHHHHHHHHHHHHH---hCCCCCCC
Confidence 35999999999 999999999999999999999995 89999999854 4578889999999997654 33333222
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561 104 TKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY 183 (441)
Q Consensus 104 ~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 183 (441)
+.+.++++|+|||+||+|+++|..|++.|++|+|||+.+.++ +++ ..|.+.+..-...+....+.+. ..++.+.
T Consensus 136 ~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g--G~l---~~gip~~~~~~~~~~~~~~~~~-~~Gv~~~ 209 (467)
T TIGR01318 136 HVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG--GLL---TFGIPSFKLDKAVLSRRREIFT-AMGIEFH 209 (467)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC--cee---eecCccccCCHHHHHHHHHHHH-HCCCEEE
Confidence 233457899999999999999999999999999999998664 222 1233322111111122222222 3466665
Q ss_pred EEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCc-CCCCCCCcc
Q 013561 184 LASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEP-LTFGIKGVK 238 (441)
Q Consensus 184 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p-~~~~ipG~~ 238 (441)
.+..+. +.+.+.. ....||+||+|||+.+ ..+++||.+
T Consensus 210 ~~~~v~-----~~~~~~~------------~~~~~D~vilAtGa~~~~~~~i~g~~ 248 (467)
T TIGR01318 210 LNCEVG-----RDISLDD------------LLEDYDAVFLGVGTYRSMRGGLPGED 248 (467)
T ss_pred CCCEeC-----CccCHHH------------HHhcCCEEEEEeCCCCCCcCCCCCcC
Confidence 543221 1111111 1347999999999986 456788864
No 21
>PRK13984 putative oxidoreductase; Provisional
Probab=99.97 E-value=2.6e-31 Score=284.79 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=127.3
Q ss_pred ccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCC-CCCCC
Q 013561 27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPG-LEATK 105 (441)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~-~~~~~ 105 (441)
-|++++++++ |.+|++.+.++|+||++||||||++||.+|+++... .++.|..+||++.+...+ ..+.. ...+.
T Consensus 205 ~~~~~i~~~~-~~~a~~~~~~~np~~~~~g~vC~~~Ce~~C~~~~~~-~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~ 279 (604)
T PRK13984 205 QYIKAIYKDD-LEEGLRWLYKTNPLSMVCGRVCTHKCETVCSIGHRG-EPIAIRWLKRYIVDNVPV---EKYSEILDDEP 279 (604)
T ss_pred HHHHHHHcCC-HHHHHHHHHhcCCccchhhCcCCchHHHhhcccCCC-CCeEeCcHHHHHHhHHHH---cCcccccCCCc
Confidence 3889999999 999999999999999999999999999999999654 466777899999986543 22211 11223
Q ss_pred CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA 185 (441)
Q Consensus 106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (441)
..++++|+|||+|+||+++|..|++.|++|+|||+.+..+ +.+ ..+...+......+....+.+. ..++.++.+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g--G~~---~~~i~~~~~~~~~~~~~~~~~~-~~gv~~~~~ 353 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG--GVM---RYGIPSYRLPDEALDKDIAFIE-ALGVKIHLN 353 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--ceE---eecCCcccCCHHHHHHHHHHHH-HCCcEEECC
Confidence 3457899999999999999999999999999999988664 111 1122221100111111112223 346776655
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561 186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK 238 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~ 238 (441)
..+..+ +..+. ...+||+||||||+. |+.+++||.+
T Consensus 354 ~~v~~~-----~~~~~------------~~~~yD~vilAtGa~~~r~l~i~G~~ 390 (604)
T PRK13984 354 TRVGKD-----IPLEE------------LREKHDAVFLSTGFTLGRSTRIPGTD 390 (604)
T ss_pred CEeCCc-----CCHHH------------HHhcCCEEEEEcCcCCCccCCCCCcC
Confidence 433221 11111 245799999999987 6778899974
No 22
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.96 E-value=9e-30 Score=270.61 Aligned_cols=113 Identities=11% Similarity=0.074 Sum_probs=97.0
Q ss_pred ccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCC
Q 013561 27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKP 106 (441)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~ 106 (441)
-|+.++++|+ |.+|+++++++||||.+||||||++||..|.++.. +.++.+..++|++.|++.+ .++..+ .+..
T Consensus 61 ~~~~~~~~g~-~~~a~~~~~~~np~~~~~grvc~~~ce~~C~r~~~-~~~v~i~~l~r~~~~~~~~---~~~~~~-~~~~ 134 (564)
T PRK12771 61 GWLALVRGGD-YEYAWRRLTKDNPFPAVMGRVCYHPCESGCNRGQV-DDAVGINAVERFLGDYAIA---NGWKFP-APAP 134 (564)
T ss_pred HHHHHHHCCC-HHHHHHHHHHhCCcchHhhCcCCchhHHhccCCCC-CCCcCHHHHHHHHHHHHHH---cCCCCC-CCCC
Confidence 4999999999 99999999999999999999999999999999854 5677888899999886654 333222 2234
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
..+++|+|||+||+||++|..|++.|++|+|||+.+.++
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 558899999999999999999999999999999998765
No 23
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.93 E-value=3.7e-25 Score=225.73 Aligned_cols=242 Identities=17% Similarity=0.186 Sum_probs=161.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCCcccc-cch-hhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNHMVFT-PLL-ASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~~~~~-~ll-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
+++|||||||+||++||..|++.|+ +||||++++++.|. +.+ .....+... +.. .+... + +....++.++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~-~~~--~~~~~-~-~~~~~~i~~~~ 77 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSP-QLQ--QVLPA-N-WWQENNVHLHS 77 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCc-ccc--ccCCH-H-HHHHCCCEEEc
Confidence 5689999999999999999998776 79999999888774 333 223332211 111 11111 1 12235788876
Q ss_pred E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCc-ccccccccCHhHHHHHHHHHHH--h
Q 013561 185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-KENAYFLREVNHAQEIRKKLLL--N 260 (441)
Q Consensus 185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~-~~~~~~l~~~~~a~~~~~~i~~--~ 260 (441)
+ .|..+|.+.+.+.+.++ .++.||+||||||++|+.+++++. .++++.+++.+++.++++.+.. .
T Consensus 78 g~~V~~id~~~~~v~~~~g-----------~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~ 146 (396)
T PRK09754 78 GVTIKTLGRDTRELVLTNG-----------ESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERS 146 (396)
T ss_pred CCEEEEEECCCCEEEECCC-----------CEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCe
Confidence 6 68999999888877542 379999999999999988777664 3678889999999888876532 1
Q ss_pred cccccCCCCceeEeeC-----ceEEE------------------------------------------------------
Q 013561 261 LMLSENPGDTVQLFSK-----YFVIT------------------------------------------------------ 281 (441)
Q Consensus 261 ~~~a~~~G~~~vE~a~-----~v~V~------------------------------------------------------ 281 (441)
+.+.+ +|..|+|+|. +.+|+
T Consensus 147 vvViG-gG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g 225 (396)
T PRK09754 147 VVIVG-AGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSG 225 (396)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCC
Confidence 22223 3455544431 01111
Q ss_pred -------EccC--------------CcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHH
Q 013561 282 -------ITLS--------------FLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLA 340 (441)
Q Consensus 282 -------il~~--------------~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA 340 (441)
++-. +..+ ++|.||+++|| +.|+|||+|||+.++++.|....+++++.|++||++||
T Consensus 226 ~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa 303 (396)
T PRK09754 226 ETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRT-CDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAA 303 (396)
T ss_pred CEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCcc-CCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHH
Confidence 0000 0000 67999999999 99999999999987655454445678999999999999
Q ss_pred HHHHHHhccccCCCcccccCCCCCCCceeecc-e-eEEEecCC
Q 013561 341 ELFNKKIGEQDGGKALSAKDINLGDPFVYKHL-G-SMATVGRY 381 (441)
Q Consensus 341 ~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~-g-~~~~lG~~ 381 (441)
+||.. .. ..++. .||.+.+. + .+.++|..
T Consensus 304 ~ni~g--------~~---~~~~~-~p~~~~~~~~~~~~~~G~~ 334 (396)
T PRK09754 304 AAMLG--------LP---LPLLP-PPWFWSDQYSDNLQFIGDM 334 (396)
T ss_pred HHhcC--------CC---CCCCC-CCceEEEeCCccEEEeeCC
Confidence 99972 21 01232 66766643 3 46777743
No 24
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.93 E-value=1.3e-24 Score=224.49 Aligned_cols=223 Identities=19% Similarity=0.250 Sum_probs=152.4
Q ss_pred CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCccccc-chhhhhcCCCCccccccchhhhhhhhcCCCCEEEE-EE
Q 013561 110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTP-LLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY-LA 185 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~-ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~ 185 (441)
+||||||||+||+++|..|++. +++|||||+++++.|.+ .++....+.........++.. +.+.+..++.+. .+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~~~~ 79 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTP--EKFYDRKQITVKTYH 79 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCH--HHHHHhCCCEEEeCC
Confidence 4899999999999999999865 68999999999988875 455555443322211111111 113333467765 47
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH----hc
Q 013561 186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL----NL 261 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~----~~ 261 (441)
+|++||.+++.|.+.+..++ +..+++||+||||||+.|+.|++++ ++++.++++.++..+++.+.. .+
T Consensus 80 ~V~~Id~~~~~v~~~~~~~~------~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~v 151 (438)
T PRK13512 80 EVIAINDERQTVTVLNRKTN------EQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKANQVDKA 151 (438)
T ss_pred EEEEEECCCCEEEEEECCCC------cEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhhcCCCEE
Confidence 99999999999998874221 2235799999999999998877654 567778889998887766532 22
Q ss_pred ccccCCCCceeEeeC-----ceEEEE-------ccCCc------------------------------------------
Q 013561 262 MLSENPGDTVQLFSK-----YFVITI-------TLSFL------------------------------------------ 287 (441)
Q Consensus 262 ~~a~~~G~~~vE~a~-----~v~V~i-------l~~~~------------------------------------------ 287 (441)
.+.+ +|..|+|+|. +.+|++ ++.++
T Consensus 152 vViG-gG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~ 230 (438)
T PRK13512 152 LVVG-AGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHY 230 (438)
T ss_pred EEEC-CCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEe
Confidence 2333 5666666651 111110 00000
Q ss_pred --------------------cc---CCceeeCCCcccCCCCCEEEecccccccc-cCCCCCCCchHHHHHHHHHHHHHHH
Q 013561 288 --------------------VR---LSQIGVDEWLRAPSVEDVFALGDCAGFLE-QTGKPVLPALAQVAERQGKYLAELF 343 (441)
Q Consensus 288 --------------------~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~-~~G~~~~p~~a~~A~~qg~~aA~nI 343 (441)
.. -|+|.||+++|| ++|+|||+|||+.... ..+.+..+++++.|.+||+++|+||
T Consensus 231 D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni 309 (438)
T PRK13512 231 DMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQI 309 (438)
T ss_pred CEEEECcCCCcChHHHHhcCcccCCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHh
Confidence 00 078999999999 9999999999996422 1232335678999999999999999
Q ss_pred H
Q 013561 344 N 344 (441)
Q Consensus 344 ~ 344 (441)
.
T Consensus 310 ~ 310 (438)
T PRK13512 310 A 310 (438)
T ss_pred c
Confidence 6
No 25
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.92 E-value=2.5e-24 Score=222.85 Aligned_cols=223 Identities=20% Similarity=0.287 Sum_probs=150.2
Q ss_pred CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcccccc-hhhhhcCCCC-ccccccchhhhhhhhcCCCCEEEE-E
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMVFTPL-LASTCVGTLE-FRSVAEPVSRIQTSLSSDPNSYFY-L 184 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~~~~l-l~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~v~~~-~ 184 (441)
+||||||||+||+++|..|++.+ ++|||||+++++.|.++ ++....+... ..+......+. +.+ .++.++ .
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~gv~~~~~ 76 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEE---FIK-SGIDVKTE 76 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHH---HHH-CCCeEEec
Confidence 37999999999999999998764 69999999998877653 3333322211 11111111111 232 467765 5
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHH----
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLL---- 259 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~---- 259 (441)
++|++||.+.+.+.+.+..++ +..++.||+||||||++|+.|++||.+ ++++.++++.++.++++.+..
T Consensus 77 ~~V~~id~~~~~v~~~~~~~~------~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~ 150 (444)
T PRK09564 77 HEVVKVDAKNKTITVKNLKTG------SIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIK 150 (444)
T ss_pred CEEEEEECCCCEEEEEECCCC------CEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCC
Confidence 689999999999988763211 112344999999999999999999986 678888888888887766532
Q ss_pred hcccccCCCCceeEeeCc-----eEEE-----------------------------------------------------
Q 013561 260 NLMLSENPGDTVQLFSKY-----FVIT----------------------------------------------------- 281 (441)
Q Consensus 260 ~~~~a~~~G~~~vE~a~~-----v~V~----------------------------------------------------- 281 (441)
.+.+.+ +|..|+|+|.. .+|+
T Consensus 151 ~vvVvG-gG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~ 229 (444)
T PRK09564 151 NIVIIG-AGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD 229 (444)
T ss_pred EEEEEC-CCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC
Confidence 223333 45555444310 0111
Q ss_pred ---------Ec-cCC----------ccc---CCceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHH
Q 013561 282 ---------IT-LSF----------LVR---LSQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGK 337 (441)
Q Consensus 282 ---------il-~~~----------~~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~ 337 (441)
++ .++ +.+ -|+|.||+++|| ++|||||+|||+..++. .+++..+++++.|++||+
T Consensus 230 ~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~ 308 (444)
T PRK09564 230 KGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGR 308 (444)
T ss_pred CCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHH
Confidence 00 000 000 078999999999 99999999999987542 233345789999999999
Q ss_pred HHHHHHH
Q 013561 338 YLAELFN 344 (441)
Q Consensus 338 ~aA~nI~ 344 (441)
++|+||.
T Consensus 309 ~~a~ni~ 315 (444)
T PRK09564 309 MVGENLA 315 (444)
T ss_pred HHHHHhc
Confidence 9999997
No 26
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.92 E-value=6.3e-26 Score=244.97 Aligned_cols=190 Identities=13% Similarity=0.116 Sum_probs=129.4
Q ss_pred cccCCCCCCCCCccccccccCCCcccCCC-cccccccccCcCCCCcCCCcccCccchhhhhcccccc------c--ccCC
Q 013561 28 GIEGLPTNKCFSPSLENVSRNSSLSYLPS-SIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEY------Q--ELSY 98 (441)
Q Consensus 28 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~g-rvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~------~--~~~~ 98 (441)
|+....+|+ |.+|++++.++||||++|| |||| +||.+|.++ . ..|++|+.+||++.|..++. . ...|
T Consensus 293 ~~~~~~~g~-~~~Al~ii~~~NP~p~~~G~RVCp-~CE~aC~r~-~-dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~ 368 (1028)
T PRK06567 293 MNYVKAQGF-NLSALAIIVIDNPMVAATGHRICN-DCSKACIYQ-K-QDPVNIPLIESNILEETLKLPYGLEIYLLLTRW 368 (1028)
T ss_pred HHHHHHCCC-HHHHHHHHHHhCCChHhhCCccCc-chHHHhcCC-C-CCCeehhHHHHHHhhhhhhhccccccccccccc
Confidence 778888999 9999999999999999999 9999 799999998 3 45789999999998853211 0 0112
Q ss_pred CC----CCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC--------------cccccchhhhh---c-C
Q 013561 99 PG----LEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH--------------MVFTPLLASTC---V-G 156 (441)
Q Consensus 99 ~~----~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~--------------~~~~~ll~~~~---~-g 156 (441)
.. .+.+++.+++||+||||||||++||..|++.||+|||||+.+. ..|.+++++.. . |
T Consensus 369 ~~~~~~~~~~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG 448 (1028)
T PRK06567 369 NPLNIYAPLPKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGG 448 (1028)
T ss_pred ccccccCCCCCCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCc
Confidence 11 1123446789999999999999999999999999999998642 12334444333 1 2
Q ss_pred CCCcccccc-----chhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC-CcC
Q 013561 157 TLEFRSVAE-----PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA-EPL 230 (441)
Q Consensus 157 ~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs-~p~ 230 (441)
...+. +.. .++.....+....++.+..+...+.+.+.+.+ ....||+|+||||+ .|+
T Consensus 449 ~~~yG-Ip~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl----------------~~~gyDAV~IATGA~kpr 511 (1028)
T PRK06567 449 VAEYG-ITVRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQA----------------FDLGFDHIAFCIGAGQPK 511 (1028)
T ss_pred ccccC-ccccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHH----------------hhcCCCEEEEeCCCCCCC
Confidence 22222 111 11111111222335666666554443322211 14579999999999 699
Q ss_pred CCCCCCcc
Q 013561 231 TFGIKGVK 238 (441)
Q Consensus 231 ~~~ipG~~ 238 (441)
.+++||.+
T Consensus 512 ~L~IPGed 519 (1028)
T PRK06567 512 VLDIENFE 519 (1028)
T ss_pred CCCCCCcc
Confidence 99999975
No 27
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.91 E-value=2.5e-23 Score=210.94 Aligned_cols=212 Identities=21% Similarity=0.275 Sum_probs=143.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCccc-ccchhhhhcCCCCcccccc-chhhhhhhhcCCCCEEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVF-TPLLASTCVGTLEFRSVAE-PVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~-~~ll~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~~ 184 (441)
+++|||||||+||+++|..|++. +.+||||+++++..| .+.++....+....+++.. .... +.+..++.++.
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~gv~~~~ 77 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGE----FAEQFNLRLFP 77 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHH----HHHhCCCEEEC
Confidence 46899999999999999999874 568999999987666 4556555544333332222 1222 22334677764
Q ss_pred -EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH--hc
Q 013561 185 -ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL--NL 261 (441)
Q Consensus 185 -~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~--~~ 261 (441)
.+|+++|.+.+.+.+.. .++.||+||||||+.|..|++||.+. ++.++++.++..+...+.. .+
T Consensus 78 ~~~V~~id~~~~~v~~~~------------~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~~~~~~v 144 (377)
T PRK04965 78 HTWVTDIDAEAQVVKSQG------------NQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQLRDAQRV 144 (377)
T ss_pred CCEEEEEECCCCEEEECC------------eEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHhhcCCeE
Confidence 58999999888776432 37899999999999999999999754 7778888888777665422 12
Q ss_pred ccccCCCCceeEeeC-----ceEEE-------------------------------------------------------
Q 013561 262 MLSENPGDTVQLFSK-----YFVIT------------------------------------------------------- 281 (441)
Q Consensus 262 ~~a~~~G~~~vE~a~-----~v~V~------------------------------------------------------- 281 (441)
.+.+ +|..|+|+|. ..+|+
T Consensus 145 vViG-gG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g 223 (377)
T PRK04965 145 LVVG-GGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSG 223 (377)
T ss_pred EEEC-CCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCC
Confidence 2222 3444433330 01111
Q ss_pred --------Ec-cCCccc----------C-CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHH
Q 013561 282 --------IT-LSFLVR----------L-SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341 (441)
Q Consensus 282 --------il-~~~~~~----------l-G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~ 341 (441)
++ .++.+. . +.|.||++||| +.|+|||+|||+.+. |. ..+.++.|++||+.+|+
T Consensus 224 ~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~gi~vd~~l~t-s~~~VyA~GD~a~~~---~~--~~~~~~~a~~~g~~~a~ 297 (377)
T PRK04965 224 RSIEVDAVIAAAGLRPNTALARRAGLAVNRGIVVDSYLQT-SAPDIYALGDCAEIN---GQ--VLPFLQPIQLSAMALAK 297 (377)
T ss_pred cEEECCEEEECcCCCcchHHHHHCCCCcCCCEEECCCccc-CCCCEEEeeecEeEC---Cc--eeehHHHHHHHHHHHHH
Confidence 00 000000 0 44999999999 999999999999764 22 23457789999999999
Q ss_pred HHH
Q 013561 342 LFN 344 (441)
Q Consensus 342 nI~ 344 (441)
||.
T Consensus 298 n~~ 300 (377)
T PRK04965 298 NLL 300 (377)
T ss_pred Hhc
Confidence 997
No 28
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.91 E-value=3.2e-23 Score=227.68 Aligned_cols=213 Identities=16% Similarity=0.217 Sum_probs=150.3
Q ss_pred CCcEEEECCCHHHHHHHHhhcc----CCCeEEEEcCCCCcccccc-hhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT----KIYDAVCISPRNHMVFTPL-LASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY 183 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~----~g~~Vtvie~~~~~~~~~l-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 183 (441)
++||||||+|+||+.+|..|.+ .+++||||++++++.|.+. ++....+. ..+++....... .+..+++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~~----~~~~gI~~~ 77 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREGF----YEKHGIKVL 77 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHHH----HHhCCCEEE
Confidence 4589999999999999999864 3589999999999888764 44444332 222333322222 223578888
Q ss_pred EE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHH--
Q 013561 184 LA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLL-- 259 (441)
Q Consensus 184 ~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~-- 259 (441)
.+ .|+.||.+.+.|.+.++ .+++||+||||||+.|+.|++||.+ .+++.+++++++.+++..+..
T Consensus 78 ~g~~V~~Id~~~~~V~~~~G-----------~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k 146 (847)
T PRK14989 78 VGERAITINRQEKVIHSSAG-----------RTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSK 146 (847)
T ss_pred cCCEEEEEeCCCcEEEECCC-----------cEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCC
Confidence 76 69999998887776542 3789999999999999999999986 567888999999888766432
Q ss_pred hcccccCCCCceeEeeC-----ceEEE----------------------------------------Ecc----------
Q 013561 260 NLMLSENPGDTVQLFSK-----YFVIT----------------------------------------ITL---------- 284 (441)
Q Consensus 260 ~~~~a~~~G~~~vE~a~-----~v~V~----------------------------------------il~---------- 284 (441)
.+.+.+ +|..|+|+|. +.+|+ +..
T Consensus 147 ~vvVIG-gG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~ 225 (847)
T PRK14989 147 RGAVVG-GGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMR 225 (847)
T ss_pred eEEEEC-CCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEE
Confidence 222333 4555555441 01111 000
Q ss_pred ----------------C----------CcccC---CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHH
Q 013561 285 ----------------S----------FLVRL---SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQ 335 (441)
Q Consensus 285 ----------------~----------~~~~l---G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~q 335 (441)
+ .+..+ |+|.||++||| +.|+|||+|||+...+ ....++..|.+|
T Consensus 226 ~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~-----~~~gl~~~a~~~ 299 (847)
T PRK14989 226 FADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQT-SDPDIYAIGECASWNN-----RVFGLVAPGYKM 299 (847)
T ss_pred ECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcC-CCCCEEEeecceeEcC-----cccccHHHHHHH
Confidence 0 00000 68999999999 9999999999996632 234578899999
Q ss_pred HHHHHHHHH
Q 013561 336 GKYLAELFN 344 (441)
Q Consensus 336 g~~aA~nI~ 344 (441)
|+++|+||.
T Consensus 300 a~vaa~~i~ 308 (847)
T PRK14989 300 AQVAVDHLL 308 (847)
T ss_pred HHHHHHHhc
Confidence 999999997
No 29
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.90 E-value=1.1e-22 Score=223.38 Aligned_cols=211 Identities=20% Similarity=0.312 Sum_probs=151.2
Q ss_pred EEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCccccc-chhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561 112 VVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMVFTP-LLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S 186 (441)
Q Consensus 112 VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~~~~-ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 186 (441)
|||||+|+||+++|..|.+ .+++||||++++++.|.. .++.+..|....+++.....+. +. ..+++++.+ .
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~---~~-~~gv~~~~g~~ 76 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDW---YE-KHGITLYTGET 76 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHH---HH-HCCCEEEcCCe
Confidence 6999999999999988765 468999999999988774 4666666655544444444443 22 357888776 7
Q ss_pred EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHHh--ccc
Q 013561 187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLLN--LML 263 (441)
Q Consensus 187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~~--~~~ 263 (441)
|+.||.+.+.|.+.++ .++.||+||||||+.|+.|++||.+ ++++.+++++++..+++..... +.+
T Consensus 77 V~~Id~~~k~V~~~~g-----------~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvV 145 (785)
T TIGR02374 77 VIQIDTDQKQVITDAG-----------RTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAV 145 (785)
T ss_pred EEEEECCCCEEEECCC-----------cEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEE
Confidence 9999999888877552 3789999999999999999999986 5788899999998887654321 222
Q ss_pred ccCCCCceeEeeC-----ceEEE----------------------------------------E----------------
Q 013561 264 SENPGDTVQLFSK-----YFVIT----------------------------------------I---------------- 282 (441)
Q Consensus 264 a~~~G~~~vE~a~-----~v~V~----------------------------------------i---------------- 282 (441)
.+ +|..|+|+|. +.+|+ +
T Consensus 146 VG-gG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~ 224 (785)
T TIGR02374 146 IG-GGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSS 224 (785)
T ss_pred EC-CCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCE
Confidence 22 3555544431 00111 0
Q ss_pred ------c--cCCcc----------cC-CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561 283 ------T--LSFLV----------RL-SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF 343 (441)
Q Consensus 283 ------l--~~~~~----------~l-G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI 343 (441)
+ .++.+ +. |.|.||++||| ++|+|||+|||+...+ ....++..|.+||+++|.||
T Consensus 225 i~~D~Vi~a~G~~Pn~~la~~~gl~~~ggI~Vd~~~~T-s~p~IyA~GD~a~~~~-----~~~gl~~~a~~qa~vaA~ni 298 (785)
T TIGR02374 225 LEADLIVMAAGIRPNDELAVSAGIKVNRGIIVNDSMQT-SDPDIYAVGECAEHNG-----RVYGLVAPLYEQAKVLADHI 298 (785)
T ss_pred EEcCEEEECCCCCcCcHHHHhcCCccCCCEEECCCccc-CCCCEEEeeecceeCC-----cccccHHHHHHHHHHHHHHh
Confidence 0 00000 00 67999999999 9999999999997642 12346788999999999999
Q ss_pred H
Q 013561 344 N 344 (441)
Q Consensus 344 ~ 344 (441)
.
T Consensus 299 ~ 299 (785)
T TIGR02374 299 C 299 (785)
T ss_pred c
Confidence 7
No 30
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.87 E-value=5.4e-21 Score=195.66 Aligned_cols=188 Identities=20% Similarity=0.275 Sum_probs=130.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
|++++|||||++|+++|..+++.|.+|||+|+.++++ ...++++...+.+. +.+ .++.+..+ .+
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-----------p~~D~ei~~~~~~~---l~~-~gv~i~~~~~v 237 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-----------PGEDPEISKELTKQ---LEK-GGVKILLNTKV 237 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----------CcCCHHHHHHHHHH---HHh-CCeEEEccceE
Confidence 7899999999999999999999999999999999876 22344455555554 444 56766665 67
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
..++...+.+.+...+. +..++.+|+|++|+|++||+.++ |+ +
T Consensus 238 ~~~~~~~~~v~v~~~~g-------~~~~~~ad~vLvAiGR~Pn~~~L-gL------------------------e----- 280 (454)
T COG1249 238 TAVEKKDDGVLVTLEDG-------EGGTIEADAVLVAIGRKPNTDGL-GL------------------------E----- 280 (454)
T ss_pred EEEEecCCeEEEEEecC-------CCCEEEeeEEEEccCCccCCCCC-Ch------------------------h-----
Confidence 77766555444433211 11268899999999999987642 11 1
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l 347 (441)
..|+|+-+. |+|.||+.+|| ++|||||+|||+ | .|++++.|..||++||+||.. .
T Consensus 281 -~~Gv~~~~r-------------g~I~VD~~~~T-nvp~IyA~GDV~------~---~~~Lah~A~~eg~iaa~~i~g-~ 335 (454)
T COG1249 281 -NAGVELDDR-------------GFIKVDDQMTT-NVPGIYAIGDVI------G---GPMLAHVAMAEGRIAAENIAG-G 335 (454)
T ss_pred -hcCceECCC-------------CCEEeCCcccc-CCCCEEEeeccC------C---CcccHhHHHHHHHHHHHHHhC-C
Confidence 112333221 88999966777 899999999998 2 356999999999999999984 1
Q ss_pred ccccCCCcccccCCCCCCCceeecceeEEEecCC
Q 013561 348 GEQDGGKALSAKDINLGDPFVYKHLGSMATVGRY 381 (441)
Q Consensus 348 ~~~~~g~~~~~~~~~~~~~f~~~~~g~~~~lG~~ 381 (441)
.. ...++.. -|+.--....+.++|..
T Consensus 336 -----~~--~~~d~~~-iP~~ift~Peia~VGlt 361 (454)
T COG1249 336 -----KR--TPIDYRL-IPSVVFTDPEIASVGLT 361 (454)
T ss_pred -----CC--CcCcccC-CCEEEECCCcceeeeCC
Confidence 11 0111222 55554444567777764
No 31
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.86 E-value=1.8e-21 Score=201.57 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=74.1
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----hhhh----------------cCCC------Cccc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----ASTC----------------VGTL------EFRS 162 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----~~~~----------------~g~~------~~~~ 162 (441)
.+|+||||||||++||..+++.|++|+|||+. .++ +.++ |... .|.. +...
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~G-G~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVG-GTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccC-ceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 57999999999999999999999999999985 333 1221 1110 0110 0000
Q ss_pred ccc-------chhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561 163 VAE-------PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIK 235 (441)
Q Consensus 163 ~~~-------~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip 235 (441)
+.. .+....+...+..+++++.+++..++.+ ++.+... + .++.||+||||||++|+.|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~~~--g--------~~~~~d~lIiATGs~p~~p~i~ 148 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVLQD--G--------TTYTAKKILIAVGGRPQKPNLP 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEecC--C--------eEEEcCEEEEecCCcCCCCCCC
Confidence 000 0111111122346789999999888764 4444321 1 3689999999999999999999
Q ss_pred Ccc
Q 013561 236 GVK 238 (441)
Q Consensus 236 G~~ 238 (441)
|.+
T Consensus 149 G~~ 151 (446)
T TIGR01424 149 GHE 151 (446)
T ss_pred Ccc
Confidence 863
No 32
>PLN02507 glutathione reductase
Probab=99.86 E-value=6.4e-21 Score=199.71 Aligned_cols=211 Identities=17% Similarity=0.135 Sum_probs=128.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC---------CCcccc----cchhhhh----------------cCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR---------NHMVFT----PLLASTC----------------VGTLE 159 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~---------~~~~~~----~ll~~~~----------------~g~~~ 159 (441)
..+|+||||||+|+.+|..+++.|.+|+|||+. +.++.+ ++.|... .|...
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 468999999999999999999999999999962 223211 1222111 01110
Q ss_pred ccccccchhhhh--------------hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561 160 FRSVAEPVSRIQ--------------TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA 225 (441)
Q Consensus 160 ~~~~~~~~~~~~--------------~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAt 225 (441)
.......+.++. +.+....+++++.+++..++.+...|...+ +++.++.||+|||||
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~---------g~~~~~~~d~LIIAT 175 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLD---------GTKLRYTAKHILIAT 175 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCC---------CcEEEEEcCEEEEec
Confidence 000111111111 112234689999999999887654444332 122368999999999
Q ss_pred CCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC-----------------------------
Q 013561 226 GAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK----------------------------- 276 (441)
Q Consensus 226 Gs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~----------------------------- 276 (441)
|++|+.|++||.+. . .+.+++..+... ...+.+.+ +|..++|+|.
T Consensus 176 Gs~p~~p~ipG~~~-~---~~~~~~~~l~~~-~k~vvVIG-gG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~ 249 (499)
T PLN02507 176 GSRAQRPNIPGKEL-A---ITSDEALSLEEL-PKRAVVLG-GGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAV 249 (499)
T ss_pred CCCCCCCCCCCccc-e---echHHhhhhhhc-CCeEEEEC-CcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHH
Confidence 99999999999632 1 233444443321 11222222 3444444330
Q ss_pred --------ceE------------------EE-----------Ec------cCCc--------ccC---CceeeCCCcccC
Q 013561 277 --------YFV------------------IT-----------IT------LSFL--------VRL---SQIGVDEWLRAP 302 (441)
Q Consensus 277 --------~v~------------------V~-----------il------~~~~--------~~l---G~I~Vd~~lqt~ 302 (441)
+++ +. ++ |..+ .++ |+|.||+++||
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T- 328 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT- 328 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-
Confidence 000 00 00 0000 000 78999999999
Q ss_pred CCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 303 SVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 303 ~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
+.|||||+|||+. .+.+++.|++||+++|+||.
T Consensus 329 s~p~IyAiGDv~~---------~~~l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 329 NIPSIWAIGDVTN---------RINLTPVALMEGTCFAKTVF 361 (499)
T ss_pred CCCCEEEeeEcCC---------CCccHHHHHHHHHHHHHHHc
Confidence 9999999999992 35689999999999999986
No 33
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.86 E-value=1.7e-21 Score=202.89 Aligned_cols=211 Identities=19% Similarity=0.219 Sum_probs=125.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhhh----------------cCCCCccccccchh
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLASTC----------------VGTLEFRSVAEPVS 168 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~~----------------~g~~~~~~~~~~~~ 168 (441)
..+|+||||||||+++|..+++.|++|+|||+.+.++-+ ++.|... .|. ........+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~-~~~~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGI-VFGEPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCc-ccCCCCcCHH
Confidence 578999999999999999999999999999987654311 1221100 011 0000111111
Q ss_pred hhh--------------hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC-CC
Q 013561 169 RIQ--------------TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT-FG 233 (441)
Q Consensus 169 ~~~--------------~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~-~~ 233 (441)
.+. ..+.+..++.++.+.+..++ .+.+.+...+ ++..++.||+||||||++|.. |.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~~v~v~~~~-------g~~~~~~~d~lViATGs~p~~~p~ 153 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTLEVTGED-------GKTTVIEFDNAIIAAGSRPIQLPF 153 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCC-------CceEEEEcCEEEEeCCCCCCCCCC
Confidence 110 01223458999999887665 4566655421 112478999999999999974 45
Q ss_pred CCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC------------------------------------c
Q 013561 234 IKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK------------------------------------Y 277 (441)
Q Consensus 234 ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~------------------------------------~ 277 (441)
+++..++++ +..++.++... .+.+.+.+ +|..|+|+|. .
T Consensus 154 ~~~~~~~v~---~~~~~~~~~~~-~~~vvIiG-gG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~ 228 (471)
T PRK06467 154 IPHDDPRIW---DSTDALELKEV-PKRLLVMG-GGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ 228 (471)
T ss_pred CCCCCCcEE---ChHHhhccccC-CCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc
Confidence 665433332 22333333211 11122222 2333333220 0
Q ss_pred eE------------------------------EE----Ec-----cCCc--------cc---CCceeeCCCcccCCCCCE
Q 013561 278 FV------------------------------IT----IT-----LSFL--------VR---LSQIGVDEWLRAPSVEDV 307 (441)
Q Consensus 278 v~------------------------------V~----il-----~~~~--------~~---lG~I~Vd~~lqt~~~~~V 307 (441)
++ +. ++ |..+ .+ -|+|.||+++|| ++|+|
T Consensus 229 v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~V 307 (471)
T PRK06467 229 FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHI 307 (471)
T ss_pred eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCE
Confidence 00 00 00 0000 00 078999999999 99999
Q ss_pred EEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 308 FALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 308 fA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
||+|||+ + .|+++..|++||+.+|.||.
T Consensus 308 yAiGDv~------~---~~~la~~A~~eG~~aa~~i~ 335 (471)
T PRK06467 308 FAIGDIV------G---QPMLAHKGVHEGHVAAEVIA 335 (471)
T ss_pred EEehhhc------C---CcccHHHHHHHHHHHHHHHc
Confidence 9999998 2 36799999999999999997
No 34
>PRK14694 putative mercuric reductase; Provisional
Probab=99.86 E-value=5.6e-21 Score=199.05 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=129.6
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh-----------h------cCCC------Cc
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST-----------C------VGTL------EF 160 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~-----------~------~g~~------~~ 160 (441)
...+|+||||||||+++|..|++.|.+|+|||+.. ++-+ ++.|.. . .|.. +.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 83 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDR 83 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCH
Confidence 35689999999999999999999999999999864 2211 111100 0 0111 00
Q ss_pred cccccchhhhh---------hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561 161 RSVAEPVSRIQ---------TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT 231 (441)
Q Consensus 161 ~~~~~~~~~~~---------~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~ 231 (441)
..+....++.. ..+.+..++.++.+++..+|.+...|.+.++ +..+++||+||||||++|+.
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g---------~~~~~~~d~lViATGs~p~~ 154 (468)
T PRK14694 84 SALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDG---------GEQTVHFDRAFIGTGARPAE 154 (468)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCC---------CeEEEECCEEEEeCCCCCCC
Confidence 01110111110 1122345899999999999887766665442 12378999999999999999
Q ss_pred CCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC-----------------------------------
Q 013561 232 FGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK----------------------------------- 276 (441)
Q Consensus 232 ~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~----------------------------------- 276 (441)
|++||.++.. +.+..++.++... ...+.+.+ +|..|+|+|.
T Consensus 155 p~i~G~~~~~--~~~~~~~~~l~~~-~~~vvViG-~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~ 230 (468)
T PRK14694 155 PPVPGLAETP--YLTSTSALELDHI-PERLLVIG-ASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRR 230 (468)
T ss_pred CCCCCCCCCc--eEcchhhhchhcC-CCeEEEEC-CCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHh
Confidence 9999975421 1222333332211 11122222 2333333320
Q ss_pred -ce------------------EE-------E----Ec-----cCCc----------ccCCceeeCCCcccCCCCCEEEec
Q 013561 277 -YF------------------VI-------T----IT-----LSFL----------VRLSQIGVDEWLRAPSVEDVFALG 311 (441)
Q Consensus 277 -~v------------------~V-------~----il-----~~~~----------~~lG~I~Vd~~lqt~~~~~VfA~G 311 (441)
++ .+ . ++ |..+ .+-|+|.||+++|| +.|+|||+|
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T-s~~~IyA~G 309 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQT-TVSGIYAAG 309 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCccc-CCCCEEEEe
Confidence 00 00 0 00 0000 00177999999999 999999999
Q ss_pred ccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 312 DCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 312 D~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
||+. .|..++.|..||+.+|.||.
T Consensus 310 D~~~---------~~~~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 310 DCTD---------QPQFVYVAAAGGSRAAINMT 333 (468)
T ss_pred ecCC---------CcccHHHHHHHHHHHHHHhc
Confidence 9992 36789999999999999996
No 35
>PRK06370 mercuric reductase; Validated
Probab=99.85 E-value=9.8e-21 Score=197.02 Aligned_cols=118 Identities=13% Similarity=0.057 Sum_probs=74.2
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhhh----------------hcCCC-------Cc
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLAST----------------CVGTL-------EF 160 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~~----------------~~g~~-------~~ 160 (441)
+...+|+||||||||+++|..+++.|++|+|||+...-+ ..++.|.. ..|.. +.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 335799999999999999999999999999999864211 11111110 01211 11
Q ss_pred cccccchh--------hhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 161 RSVAEPVS--------RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 161 ~~~~~~~~--------~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
..+....+ .....+.+..++.++.++...++ .+.+.+.. .++.||+||||||++|+.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~--~~~v~v~~------------~~~~~d~lViATGs~p~~p 148 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES--PNTVRVGG------------ETLRAKRIFINTGARAAIP 148 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEcc--CCEEEECc------------EEEEeCEEEEcCCCCCCCC
Confidence 11110010 01111222237888887765443 55665532 2689999999999999999
Q ss_pred CCCCcc
Q 013561 233 GIKGVK 238 (441)
Q Consensus 233 ~ipG~~ 238 (441)
++||.+
T Consensus 149 ~i~G~~ 154 (463)
T PRK06370 149 PIPGLD 154 (463)
T ss_pred CCCCCC
Confidence 999975
No 36
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.85 E-value=3.2e-21 Score=199.49 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----hhhh-----cCCCCccccc-------cchhh-h
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----ASTC-----VGTLEFRSVA-------EPVSR-I 170 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----~~~~-----~g~~~~~~~~-------~~~~~-~ 170 (441)
..+|+||||||||+++|..|++.|++|+|||+.+......++ |... ....++.... ..++. .
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 468999999999999999999999999999997642211121 1100 0000110000 00110 0
Q ss_pred hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561 171 QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK 238 (441)
Q Consensus 171 ~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~ 238 (441)
...+.+..+++++.+++..++.+ .+.+...++ ..++.||+||||||++|..|++||.+
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~--~~~v~~~~g--------~~~~~~d~lviATGs~p~~p~i~G~~ 140 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNH--SLRVHRPEG--------NLEIHGEKIFINTGAQTVVPPIPGIT 140 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCC--EEEEEeCCC--------eEEEEeCEEEEcCCCcCCCCCCCCcc
Confidence 11233345889999998888764 444433211 12689999999999999999999974
No 37
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.84 E-value=6.9e-21 Score=198.06 Aligned_cols=120 Identities=14% Similarity=0.082 Sum_probs=74.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhhh--------cC---CCCcc----ccccchhh
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLASTC--------VG---TLEFR----SVAEPVSR 169 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~~--------~g---~~~~~----~~~~~~~~ 169 (441)
..+|+||||||+|+++|..|++.|++|+|||+.+.++-. .+.|... .. ...+. ........
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFAD 84 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHH
Confidence 568999999999999999999999999999997655311 1111100 00 00000 00001110
Q ss_pred --------------hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561 170 --------------IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIK 235 (441)
Q Consensus 170 --------------~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip 235 (441)
....+.+..++.++.+++..++.+ .+.+...+ ++..++.||+||||||++|+.|+++
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~~~-------g~~~~~~~d~lviATGs~p~~p~~~ 155 (461)
T PRK05249 85 LLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPH--TVEVECPD-------GEVETLTADKIVIATGSRPYRPPDV 155 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCC--EEEEEeCC-------CceEEEEcCEEEEcCCCCCCCCCCC
Confidence 011112335788999988777654 44444321 1123689999999999999988777
Q ss_pred Cc
Q 013561 236 GV 237 (441)
Q Consensus 236 G~ 237 (441)
+.
T Consensus 156 ~~ 157 (461)
T PRK05249 156 DF 157 (461)
T ss_pred CC
Confidence 65
No 38
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.84 E-value=1.7e-20 Score=183.36 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=76.2
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhhhhcCC---CCccccccchhhhhhhhcCCCCEEEEE
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLASTCVGT---LEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
+|+||||||||+++|..|++.|++|+|||+.+..+ ....++..+ +. ....++...+++. +. ..++.++.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~---~~-~~gv~~~~ 76 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYP-GFPEGISGPELMEKMKEQ---AV-KFGAEIIY 76 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccC-CCCCCCChHHHHHHHHHH---HH-HcCCeEEE
Confidence 79999999999999999999999999999876211 000000011 11 0111222222222 22 24577777
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK 238 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~ 238 (441)
++|++++...+.+.+...+ ..++.||+||+|||+.|+.|++||.+
T Consensus 77 ~~v~~v~~~~~~~~v~~~~---------~~~~~~d~liiAtG~~~~~~~i~g~~ 121 (300)
T TIGR01292 77 EEVIKVDLSDRPFKVKTGD---------GKEYTAKAVIIATGASARKLGIPGED 121 (300)
T ss_pred EEEEEEEecCCeeEEEeCC---------CCEEEeCEEEECCCCCcccCCCCChh
Confidence 8999999887766555421 13789999999999999988999864
No 39
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.84 E-value=2.1e-20 Score=193.27 Aligned_cols=120 Identities=13% Similarity=0.181 Sum_probs=76.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccc-----hhhhhc-----CCCCccccccc-------hhhhh
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPL-----LASTCV-----GTLEFRSVAEP-------VSRIQ 171 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~l-----l~~~~~-----g~~~~~~~~~~-------~~~~~ 171 (441)
..+|+||||||||++||..|++.|++|+|||+++......+ +|.... ...+...+... ++...
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999874311112 111110 00011111111 10000
Q ss_pred hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561 172 TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK 238 (441)
Q Consensus 172 ~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~ 238 (441)
.......++.++.+++..+ +.++|.+.... +..++.||+||||||++|+.|++||.+
T Consensus 83 ~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~--------~~~~~~~d~vViATGs~~~~p~i~G~~ 139 (438)
T PRK07251 83 YAMLAGSGVDLYDAEAHFV--SNKVIEVQAGD--------EKIELTAETIVINTGAVSNVLPIPGLA 139 (438)
T ss_pred HHHHHhCCCEEEEEEEEEc--cCCEEEEeeCC--------CcEEEEcCEEEEeCCCCCCCCCCCCcC
Confidence 0122335788888877654 45677766421 123689999999999999999999974
No 40
>PRK13748 putative mercuric reductase; Provisional
Probab=99.83 E-value=4.9e-20 Score=196.27 Aligned_cols=212 Identities=19% Similarity=0.186 Sum_probs=124.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh---------------h--cCCC------Ccc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST---------------C--VGTL------EFR 161 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~---------------~--~g~~------~~~ 161 (441)
..+|+||||||||+++|..|++.|.+|+|||++ .++-+ ++.|.. . .|.. +.+
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 579999999999999999999999999999987 43211 111111 0 0211 000
Q ss_pred ccccchhh---------hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 162 SVAEPVSR---------IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 162 ~~~~~~~~---------~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
.+....+. ....+.+..++.++.+++..++.. .+.+...+ ++..++.||+||||||++|+.|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~~~-------g~~~~~~~d~lviAtGs~p~~p 247 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQ--TLIVRLND-------GGERVVAFDRCLIATGASPAVP 247 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCC--EEEEEeCC-------CceEEEEcCEEEEcCCCCCCCC
Confidence 01000000 001122334789999998887754 44443311 1123689999999999999999
Q ss_pred CCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC------------------------------------
Q 013561 233 GIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK------------------------------------ 276 (441)
Q Consensus 233 ~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~------------------------------------ 276 (441)
++||.++.. .+ +..++.... ...+.+.+.+ +|..|+|+|.
T Consensus 248 ~i~g~~~~~-~~-~~~~~~~~~-~~~~~vvViG-gG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~ 323 (561)
T PRK13748 248 PIPGLKETP-YW-TSTEALVSD-TIPERLAVIG-SSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAE 323 (561)
T ss_pred CCCCCCccc-eE-ccHHHhhcc-cCCCeEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHC
Confidence 999975321 11 112221110 0001122222 2333333320
Q ss_pred ceE------------------E-------E----Ec-----cCCc--------ccC---CceeeCCCcccCCCCCEEEec
Q 013561 277 YFV------------------I-------T----IT-----LSFL--------VRL---SQIGVDEWLRAPSVEDVFALG 311 (441)
Q Consensus 277 ~v~------------------V-------~----il-----~~~~--------~~l---G~I~Vd~~lqt~~~~~VfA~G 311 (441)
+++ + . ++ |... .++ |+|.||+++|| +.|||||+|
T Consensus 324 gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~G 402 (561)
T PRK13748 324 GIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAG 402 (561)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEee
Confidence 000 0 0 00 0000 000 78999999999 999999999
Q ss_pred ccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 312 DCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 312 D~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
||+. .+.++..|+.||++||.||.
T Consensus 403 D~~~---------~~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 403 DCTD---------QPQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred ecCC---------CccchhHHHHHHHHHHHHHc
Confidence 9992 35788999999999999996
No 41
>PRK06116 glutathione reductase; Validated
Probab=99.83 E-value=3e-20 Score=192.75 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=73.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh-----------------hcCCC------Ccc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST-----------------CVGTL------EFR 161 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~-----------------~~g~~------~~~ 161 (441)
..+|+||||||||++||..|++.|++|+|||+. .++-+ .++|.. ..|.. +..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 458999999999999999999999999999986 33211 111110 01110 000
Q ss_pred ccccc----hhhh---hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561 162 SVAEP----VSRI---QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI 234 (441)
Q Consensus 162 ~~~~~----~~~~---~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i 234 (441)
.+... +.++ ........+++++.+++..++. ++|.+ ++ .++.||+||||||+.|+.|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~-~g-----------~~~~~d~lViATGs~p~~p~i 148 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV-NG-----------ERYTADHILIATGGRPSIPDI 148 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE-CC-----------EEEEeCEEEEecCCCCCCCCC
Confidence 00000 0000 0111223578999998887764 56665 21 368999999999999999999
Q ss_pred CCcc
Q 013561 235 KGVK 238 (441)
Q Consensus 235 pG~~ 238 (441)
||.+
T Consensus 149 ~g~~ 152 (450)
T PRK06116 149 PGAE 152 (450)
T ss_pred CCcc
Confidence 9863
No 42
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.83 E-value=8.6e-20 Score=190.27 Aligned_cols=215 Identities=20% Similarity=0.198 Sum_probs=126.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCC--------CCccc----ccchhhhh----------------cCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPR--------NHMVF----TPLLASTC----------------VGTLE 159 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~--------~~~~~----~~ll~~~~----------------~g~~~ 159 (441)
..+|+||||||+|+.+|..+++. |.+|+|||+. +.++- .+|.|... .|...
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~ 82 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEF 82 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeec
Confidence 46899999999999999999996 8999999973 23321 11211111 01100
Q ss_pred c-cccccchhhh--------------h-hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEE
Q 013561 160 F-RSVAEPVSRI--------------Q-TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223 (441)
Q Consensus 160 ~-~~~~~~~~~~--------------~-~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~Lvl 223 (441)
. ......+..+ . .++....+++++.+...-++ .++|.+....++. ..+.+++.||+|||
T Consensus 83 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~---~~~~~~~~~d~lII 157 (486)
T TIGR01423 83 DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPK---SAVKERLQAEHILL 157 (486)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCC---CCcceEEECCEEEE
Confidence 0 0001111111 0 11222358999999876554 5677775421100 01124789999999
Q ss_pred cCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC--------ceEEE-------EccCCc-
Q 013561 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK--------YFVIT-------ITLSFL- 287 (441)
Q Consensus 224 AtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~--------~v~V~-------il~~~~- 287 (441)
|||++|+.|++||.+. ++ +.+++..+... .+.+.+.+ +|..|+|+|. +.+|+ +++.++
T Consensus 158 ATGs~p~~p~i~G~~~-~~---~~~~~~~~~~~-~~~vvIIG-gG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~ 231 (486)
T TIGR01423 158 ATGSWPQMLGIPGIEH-CI---SSNEAFYLDEP-PRRVLTVG-GGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDS 231 (486)
T ss_pred ecCCCCCCCCCCChhh-ee---chhhhhccccC-CCeEEEEC-CCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCH
Confidence 9999999999999642 22 22232222111 11122222 3444444331 11111 000000
Q ss_pred --------------------------------------------------------------------ccC---CceeeC
Q 013561 288 --------------------------------------------------------------------VRL---SQIGVD 296 (441)
Q Consensus 288 --------------------------------------------------------------------~~l---G~I~Vd 296 (441)
.++ |+|.||
T Consensus 232 ~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd 311 (486)
T TIGR01423 232 TLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVD 311 (486)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecC
Confidence 000 789999
Q ss_pred CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 297 EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 297 ~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
+++|| +.|||||+|||+ | .+++++.|++||+++|+||.
T Consensus 312 ~~l~T-s~~~IyA~GDv~------~---~~~l~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 312 EFSRT-NVPNIYAIGDVT------D---RVMLTPVAINEGAAFVDTVF 349 (486)
T ss_pred CCCcC-CCCCEEEeeecC------C---CcccHHHHHHHHHHHHHHHh
Confidence 99999 999999999998 2 46799999999999999997
No 43
>PTZ00058 glutathione reductase; Provisional
Probab=99.83 E-value=4.9e-20 Score=194.40 Aligned_cols=53 Identities=32% Similarity=0.488 Sum_probs=44.2
Q ss_pred CceeeCCCcccCCCCCEEEecccccccc------------------------cCCCCC-CCchHHHHHHHHHHHHHHHH
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLE------------------------QTGKPV-LPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~------------------------~~G~~~-~p~~a~~A~~qg~~aA~nI~ 344 (441)
|+|.||+++|| +.|+|||+|||+.+.+ .+++.. .++++..|..||+++|+||.
T Consensus 353 G~I~VDe~lqT-s~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 353 GYIKVDDNQRT-SVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred CeEEECcCCcc-CCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence 78999999999 9999999999997321 123322 47899999999999999997
No 44
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.83 E-value=2.4e-20 Score=194.04 Aligned_cols=44 Identities=41% Similarity=0.575 Sum_probs=40.4
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
|+|.||+++|| +.|+|||+|||+. .++++..|++||+.+|.||.
T Consensus 289 g~i~vd~~~~t-~~~~VyAiGD~~~---------~~~~~~~A~~~g~~aa~ni~ 332 (462)
T PRK06416 289 GFIEVDEQLRT-NVPNIYAIGDIVG---------GPMLAHKASAEGIIAAEAIA 332 (462)
T ss_pred CEEeECCCCcc-CCCCEEEeeecCC---------CcchHHHHHHHHHHHHHHHc
Confidence 67999999999 9999999999992 36799999999999999997
No 45
>PRK14727 putative mercuric reductase; Provisional
Probab=99.83 E-value=6.1e-20 Score=191.73 Aligned_cols=120 Identities=16% Similarity=0.112 Sum_probs=75.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhh----------------h-c----CCCCcc-cccc-
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLAST----------------C-V----GTLEFR-SVAE- 165 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~----------------~-~----g~~~~~-~~~~- 165 (441)
+.+|+|||+|++|+++|..|++.|.+|+|||+.+.++- .+++.. . . |..... .+..
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG-~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG-CCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee-EeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 56899999999999999999999999999999755431 111110 0 0 111000 0000
Q ss_pred -----------chhh--hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 166 -----------PVSR--IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 166 -----------~~~~--~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
.++. ....+....++.++.+...-++. +.+.+...+ ++..++.||+||||||++|+.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~-------g~~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRLHD-------GGERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecC--CEEEEEeCC-------CceEEEEeCEEEEecCCCCCCC
Confidence 0000 01112223478888888766654 455554321 1123689999999999999999
Q ss_pred CCCCcc
Q 013561 233 GIKGVK 238 (441)
Q Consensus 233 ~ipG~~ 238 (441)
++||.+
T Consensus 166 ~i~G~~ 171 (479)
T PRK14727 166 PIPGLM 171 (479)
T ss_pred CCCCcC
Confidence 999974
No 46
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.83 E-value=8.6e-20 Score=189.97 Aligned_cols=213 Identities=23% Similarity=0.236 Sum_probs=123.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh----------------hcCCCC---------
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST----------------CVGTLE--------- 159 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~----------------~~g~~~--------- 159 (441)
+++|+|||+|++|+++|..+++.|++|+|||+++ ++.+ .+.|.. ..|...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 3589999999999999999999999999999875 2211 111100 012110
Q ss_pred ccccccchhhh-------hhhhcCCCCEEEEEEEEEEEe--CCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561 160 FRSVAEPVSRI-------QTSLSSDPNSYFYLASCIGID--TDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL 230 (441)
Q Consensus 160 ~~~~~~~~~~~-------~~~~~~~~~v~~~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~ 230 (441)
...+....++. .....+..+++++.+++..++ .+.+.+.+...+ ++..++.||+||||||++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~-------g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTAD-------GGEETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCC-------CceEEEecCEEEEcCCCCCC
Confidence 00000001111 001122357899999888755 455666665421 11236899999999999998
Q ss_pred CCCCCCcc-cccccccCHhHHHHHHHHHHHhcccccCCCCceeEee----------------------------------
Q 013561 231 TFGIKGVK-ENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS---------------------------------- 275 (441)
Q Consensus 231 ~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a---------------------------------- 275 (441)
.|+.++.. +.++..+.+.+...+. ..+.+.+ +|..++|+|
T Consensus 153 ~~p~~~~~~~~v~~~~~~~~~~~~~----~~vvVIG-gG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~ 227 (466)
T PRK07845 153 ILPTAEPDGERILTWRQLYDLDELP----EHLIVVG-SGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEV 227 (466)
T ss_pred CCCCCCCCCceEEeehhhhcccccC----CeEEEEC-CCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHH
Confidence 76654432 3333333332221111 1111111 222222222
Q ss_pred ---------------------CceEEE------------Ec-----cCCc--------ccC---CceeeCCCcccCCCCC
Q 013561 276 ---------------------KYFVIT------------IT-----LSFL--------VRL---SQIGVDEWLRAPSVED 306 (441)
Q Consensus 276 ---------------------~~v~V~------------il-----~~~~--------~~l---G~I~Vd~~lqt~~~~~ 306 (441)
+.+.+. ++ |..+ ..+ |+|.||+++|| +.|+
T Consensus 228 L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~ 306 (466)
T PRK07845 228 FARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPG 306 (466)
T ss_pred HHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCC
Confidence 001110 00 0000 001 78999999999 9999
Q ss_pred EEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 307 VFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 307 VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
|||+|||+. .++++..|..||+++|.||.
T Consensus 307 IyA~GD~~~---------~~~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 307 IYAAGDCTG---------VLPLASVAAMQGRIAMYHAL 335 (466)
T ss_pred EEEEeeccC---------CccchhHHHHHHHHHHHHHc
Confidence 999999992 36789999999999999997
No 47
>PLN02546 glutathione reductase
Probab=99.83 E-value=6.2e-20 Score=193.72 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=74.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC---------CCcc----cccchhhhh----------------cCCC-
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR---------NHMV----FTPLLASTC----------------VGTL- 158 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~---------~~~~----~~~ll~~~~----------------~g~~- 158 (441)
..+|+|||+||+|+.+|..+++.|.+|+|||+. ..++ ..+|.|... .|..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 358999999999999999999999999999951 1221 111211111 1110
Q ss_pred ------Ccccccc----chh---hhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561 159 ------EFRSVAE----PVS---RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA 225 (441)
Q Consensus 159 ------~~~~~~~----~~~---~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAt 225 (441)
+...+.. .+. +......+..+++++.+++..++.. .+.+.. .++.||+|||||
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~V~v~G------------~~~~~D~LVIAT 224 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--TVDVDG------------KLYTARNILIAV 224 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--EEEECC------------EEEECCEEEEeC
Confidence 0000000 011 1111123346899999999888763 454421 268999999999
Q ss_pred CCCcCCCCCCCcc
Q 013561 226 GAEPLTFGIKGVK 238 (441)
Q Consensus 226 Gs~p~~~~ipG~~ 238 (441)
|++|..|++||.+
T Consensus 225 Gs~p~~P~IpG~~ 237 (558)
T PLN02546 225 GGRPFIPDIPGIE 237 (558)
T ss_pred CCCCCCCCCCChh
Confidence 9999999999963
No 48
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.82 E-value=4.9e-20 Score=191.80 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=73.0
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----hh-----------hh----cCC------CCccccc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----AS-----------TC----VGT------LEFRSVA 164 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----~~-----------~~----~g~------~~~~~~~ 164 (441)
+|+||||||||+++|..+++.|++|+|||+.+ ++- .++ |. .. .|. .+...+.
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG-~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGG-TCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccC-CeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 69999999999999999999999999999875 321 221 10 00 010 0000000
Q ss_pred cchhhh--------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCC
Q 013561 165 EPVSRI--------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG 236 (441)
Q Consensus 165 ~~~~~~--------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG 236 (441)
...++. ...+.+..+++++.+++..++ .+++.+.++ ...+.||+||||||++|+.|++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~~g----------~~~~~~~~lIiATGs~p~~p~i~G 147 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVDLG----------REVRGAKRFLIATGARPAIPPIPG 147 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEcCC----------eEEEEeCEEEEcCCCCCCCCCCCC
Confidence 000111 011223457888888887654 456665431 125789999999999999999999
Q ss_pred cc
Q 013561 237 VK 238 (441)
Q Consensus 237 ~~ 238 (441)
.+
T Consensus 148 ~~ 149 (463)
T TIGR02053 148 LK 149 (463)
T ss_pred cc
Confidence 75
No 49
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.82 E-value=5e-20 Score=190.86 Aligned_cols=44 Identities=39% Similarity=0.528 Sum_probs=40.2
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
|+|.||+++|| +.|+|||+|||+ + .+.++..|++||+.+|+||.
T Consensus 283 G~i~vd~~~~T-~~p~IyAiGD~~------~---~~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 283 GQIIVDEYQNT-NVPGIYALGDVV------G---KVELTPVAIAAGRKLSERLF 326 (450)
T ss_pred CcEEeCCCCcC-CCCCEEEEEecC------C---CcccHHHHHHHHHHHHHHHh
Confidence 78999999999 999999999999 2 35789999999999999997
No 50
>PRK07846 mycothione reductase; Reviewed
Probab=99.82 E-value=1.8e-19 Score=186.63 Aligned_cols=206 Identities=18% Similarity=0.203 Sum_probs=123.8
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc---ccccchhhhh----------------cCCC------Cccccc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM---VFTPLLASTC----------------VGTL------EFRSVA 164 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~---~~~~ll~~~~----------------~g~~------~~~~~~ 164 (441)
.+|+||||||+|..+|... .|.+|+|||+..-- .+.++.|... .|.. +...+.
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV 79 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence 4799999999999998774 59999999985311 1112322211 1211 010111
Q ss_pred cch----hhhh----hhh-cCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561 165 EPV----SRIQ----TSL-SSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIK 235 (441)
Q Consensus 165 ~~~----~~~~----~~~-~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip 235 (441)
... +++. ... .+..+++++.++...+ +.++|.+.++ .++.||+||||||++|+.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~V~v~~g-----------~~~~~d~lViATGs~p~~p~i~ 146 (451)
T PRK07846 80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPKTLRTGDG-----------EEITADQVVIAAGSRPVIPPVI 146 (451)
T ss_pred HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCCEEEECCC-----------CEEEeCEEEEcCCCCCCCCCCC
Confidence 111 1110 011 2235788888887766 4567776532 2689999999999999999999
Q ss_pred CcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC---------------------------------------
Q 013561 236 GVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK--------------------------------------- 276 (441)
Q Consensus 236 G~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~--------------------------------------- 276 (441)
|.+.. .+.+.+++..+... .+.+.+.+ +|..|+|+|.
T Consensus 147 g~~~~--~~~~~~~~~~l~~~-~~~vvIIG-gG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~~~~v~ 222 (451)
T PRK07846 147 ADSGV--RYHTSDTIMRLPEL-PESLVIVG-GGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWD 222 (451)
T ss_pred CcCCc--cEEchHHHhhhhhc-CCeEEEEC-CCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHhcCeE
Confidence 86421 23444555444321 11222222 3343433320
Q ss_pred ---------------ceEEE------------Ec-----cCCc--------ccC---CceeeCCCcccCCCCCEEEeccc
Q 013561 277 ---------------YFVIT------------IT-----LSFL--------VRL---SQIGVDEWLRAPSVEDVFALGDC 313 (441)
Q Consensus 277 ---------------~v~V~------------il-----~~~~--------~~l---G~I~Vd~~lqt~~~~~VfA~GD~ 313 (441)
.+.++ ++ |..+ .++ |+|.||+++|| ++|+|||+|||
T Consensus 223 i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~ 301 (451)
T PRK07846 223 VRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDV 301 (451)
T ss_pred EEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeec
Confidence 00000 00 0000 000 78999999999 99999999999
Q ss_pred ccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 314 AGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 314 a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
+. .+++++.|.+||+++|+||.
T Consensus 302 ~~---------~~~l~~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 302 SS---------PYQLKHVANHEARVVQHNLL 323 (451)
T ss_pred CC---------CccChhHHHHHHHHHHHHHc
Confidence 92 35789999999999999997
No 51
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.82 E-value=8.9e-20 Score=189.88 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=39.0
Q ss_pred ceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 292 ~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.+.||+++|| +.|+|||+|||+. .|++++.|.+||+++|+||.
T Consensus 294 G~~vd~~~~T-s~~~IyA~GD~~~---------~~~la~~A~~~g~~aa~~i~ 336 (466)
T PRK06115 294 GMLANDHHRT-SVPGVWVIGDVTS---------GPMLAHKAEDEAVACIERIA 336 (466)
T ss_pred CEEECCCeec-CCCCEEEeeecCC---------CcccHHHHHHHHHHHHHHHc
Confidence 4789999999 9999999999992 36799999999999999997
No 52
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.81 E-value=1.5e-19 Score=187.90 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=73.7
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhh----------------hhcCCCCc-cccccchhhh
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLAS----------------TCVGTLEF-RSVAEPVSRI 170 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~----------------~~~g~~~~-~~~~~~~~~~ 170 (441)
+|+||||||||+++|..+++.|.+|+|||+.+..+ ..++.|. ...|.... .....++..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 79999999999999999999999999999975321 1111110 01122110 0111111111
Q ss_pred --------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCC
Q 013561 171 --------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG 236 (441)
Q Consensus 171 --------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG 236 (441)
.+.+.+..+++++.+++..++. +.+.+...+ +..++.||+||||||++|+.+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~--~~v~v~~~~--------~~~~~~~d~lviATGs~p~~~p~~~ 151 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETD--HRVRVEYGD--------KEEVVDAEQFIIAAGSEPTELPFAP 151 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccC--CEEEEeeCC--------CcEEEECCEEEEeCCCCCCCCCCCC
Confidence 1112334688999999887764 445554311 1136899999999999998877777
Q ss_pred c
Q 013561 237 V 237 (441)
Q Consensus 237 ~ 237 (441)
.
T Consensus 152 ~ 152 (458)
T PRK06912 152 F 152 (458)
T ss_pred C
Confidence 5
No 53
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.81 E-value=1.4e-19 Score=188.78 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=71.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh----------------hcCCC------Cccc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST----------------CVGTL------EFRS 162 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~----------------~~g~~------~~~~ 162 (441)
..+|+||||||||+++|..|++.|++|+|||+. .++-+ ++.|.. ..|.. +...
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK 82 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 568999999999999999999999999999986 33211 111110 01110 0000
Q ss_pred cccc-------hhhhhhhhcCCCCEEEEEEEEEEEeCC-----CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561 163 VAEP-------VSRIQTSLSSDPNSYFYLASCIGIDTD-----KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL 230 (441)
Q Consensus 163 ~~~~-------~~~~~~~~~~~~~v~~~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~ 230 (441)
+... +......+.+..+++++.+++..++.+ .+.+.+...+ ++..++.||+||||||++|+
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~-------g~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETET-------GENEMIIPENLLIATGSRPV 155 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCC-------CceEEEEcCEEEEeCCCCCC
Confidence 0000 110011122345899999999998876 3355554321 11247899999999999986
Q ss_pred CC
Q 013561 231 TF 232 (441)
Q Consensus 231 ~~ 232 (441)
.+
T Consensus 156 ~~ 157 (472)
T PRK05976 156 EL 157 (472)
T ss_pred CC
Confidence 54
No 54
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.81 E-value=2.8e-19 Score=186.63 Aligned_cols=121 Identities=16% Similarity=0.089 Sum_probs=75.8
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC--------Cccc----ccchhhh----------------hcCCCCcc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN--------HMVF----TPLLAST----------------CVGTLEFR 161 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~--------~~~~----~~ll~~~----------------~~g~~~~~ 161 (441)
.+|+|||+||+|+.+|..+++.|.+|+|||+.. .++. .++.|.. ..|.....
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~ 82 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVEE 82 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccCC
Confidence 479999999999999999999999999999731 1211 1121110 01111000
Q ss_pred ccccch--------------hhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561 162 SVAEPV--------------SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227 (441)
Q Consensus 162 ~~~~~~--------------~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs 227 (441)
.....+ ......+.+..+++++.+...-++. +++.+...+ ++...++||+||||||+
T Consensus 83 ~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~-------g~~~~~~~d~lVIATGs 153 (484)
T TIGR01438 83 TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNKK-------GKEKIYSAERFLIATGE 153 (484)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEeccC-------CCceEEEeCEEEEecCC
Confidence 001111 1111112344688999998877764 456665321 11246899999999999
Q ss_pred CcCCCCCCCccc
Q 013561 228 EPLTFGIKGVKE 239 (441)
Q Consensus 228 ~p~~~~ipG~~~ 239 (441)
+|+.|++||.++
T Consensus 154 ~p~~p~ipG~~~ 165 (484)
T TIGR01438 154 RPRYPGIPGAKE 165 (484)
T ss_pred CCCCCCCCCccc
Confidence 999999999754
No 55
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.81 E-value=1.5e-19 Score=191.72 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=75.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhh--hcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLAST--CVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS 186 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 186 (441)
..+|+|||||||||+||..|++.|++|+|||+.+..+........ ..+..... .....+.+.. ..+..++.++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~-~~~l~~~l~~-~~~~~gv~~~~~~ 81 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTT-GPELMQEMRQ-QAQDFGVKFLQAE 81 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCC-HHHHHHHHHH-HHHHcCCEEeccE
Confidence 468999999999999999999999999999986532210100000 00110000 0001111111 2223467888889
Q ss_pred EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561 187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK 238 (441)
Q Consensus 187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~ 238 (441)
|++++.+.+...+.... .++.||+||||||+.|+.|++||.+
T Consensus 82 V~~i~~~~~~~~V~~~~----------g~~~a~~lVlATGa~p~~~~ipG~~ 123 (555)
T TIGR03143 82 VLDVDFDGDIKTIKTAR----------GDYKTLAVLIATGASPRKLGFPGEE 123 (555)
T ss_pred EEEEEecCCEEEEEecC----------CEEEEeEEEECCCCccCCCCCCCHH
Confidence 99998866544444321 2578999999999999999999964
No 56
>PRK10262 thioredoxin reductase; Provisional
Probab=99.81 E-value=9.5e-20 Score=180.70 Aligned_cols=118 Identities=13% Similarity=0.071 Sum_probs=74.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA 185 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (441)
.++|+|||||||||+||..|++.|++|++||..+.-+ +.+..+..+ +....-. ...+.+.........+..+..+
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP-GDPNDLT-GPLLMERMHEHATKFETEIIFD 83 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCC-CCCCCCC-HHHHHHHHHHHHHHCCCEEEee
Confidence 6789999999999999999999999999998643211 111111111 1100000 0011111111111223456666
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561 186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK 238 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~ 238 (441)
++.+|+...+.+.+.... ..+.||+||||||+.|+.|++||.+
T Consensus 84 ~v~~v~~~~~~~~v~~~~----------~~~~~d~vilAtG~~~~~~~i~g~~ 126 (321)
T PRK10262 84 HINKVDLQNRPFRLTGDS----------GEYTCDALIIATGASARYLGLPSEE 126 (321)
T ss_pred EEEEEEecCCeEEEEecC----------CEEEECEEEECCCCCCCCCCCCCHH
Confidence 788888877777665421 2689999999999999999999954
No 57
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.80 E-value=7.4e-19 Score=182.83 Aligned_cols=44 Identities=41% Similarity=0.646 Sum_probs=40.5
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
|+|.||+++|| +.|+|||+|||+. .++++..|+.||+.+|+||.
T Consensus 287 g~i~vd~~l~t-~~~~IyaiGD~~~---------~~~~~~~A~~~g~~aa~~i~ 330 (461)
T TIGR01350 287 GRIVVDEYMRT-NVPGIYAIGDVIG---------GPMLAHVASHEGIVAAENIA 330 (461)
T ss_pred CcEeeCCCccc-CCCCEEEeeecCC---------CcccHHHHHHHHHHHHHHHc
Confidence 78999999999 9999999999992 36799999999999999997
No 58
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.79 E-value=1.2e-18 Score=179.48 Aligned_cols=208 Identities=18% Similarity=0.240 Sum_probs=138.7
Q ss_pred HHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCCCc-cc-cccchhhhhhhhcCCCCEEEE-EEEEEEEeCCCCE
Q 013561 123 RFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTLEF-RS-VAEPVSRIQTSLSSDPNSYFY-LASCIGIDTDKHE 196 (441)
Q Consensus 123 ~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~v~~~-~~~v~~id~~~~~ 196 (441)
+||.+|++. +++|||||+++++.|.++ ++....|.... ++ +....+. +....++.++ .++|++||.+++.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~~~~gv~~~~~~~V~~id~~~~~ 76 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEV----FIKKRGIDVKTNHEVIEVNDERQT 76 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHH----HHHhcCCeEEecCEEEEEECCCCE
Confidence 367777664 588999999999988874 66665554332 11 1111222 2223467765 5699999999999
Q ss_pred EEEEecCCCCCCCCCCcceee--CCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHH----HhcccccCCCC
Q 013561 197 VYCETVNNGKLSHEPHQFKVA--YDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLL----LNLMLSENPGD 269 (441)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~i~--yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~----~~~~~a~~~G~ 269 (441)
+.+.+..++ .++. ||+||||||++|+.|++||.+ ++++.++++.++.+++..+. ..+.+.+ +|.
T Consensus 77 v~~~~~~~~--------~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViG-gG~ 147 (427)
T TIGR03385 77 VVVRNNKTN--------ETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIG-GGY 147 (427)
T ss_pred EEEEECCCC--------CEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEEC-CCH
Confidence 988763211 2456 999999999999999999986 67788888888887776652 1222222 344
Q ss_pred ceeEeeC-----ceEEE------------------------------------------------------------Ecc
Q 013561 270 TVQLFSK-----YFVIT------------------------------------------------------------ITL 284 (441)
Q Consensus 270 ~~vE~a~-----~v~V~------------------------------------------------------------il~ 284 (441)
.|+|+|. +.+|+ ++-
T Consensus 148 ~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~ 227 (427)
T TIGR03385 148 IGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVIL 227 (427)
T ss_pred HHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEE
Confidence 4444330 00011 000
Q ss_pred --CC----------ccc---CCceeeCCCcccCCCCCEEEecccccccccC-CCCCCCchHHHHHHHHHHHHHHHH
Q 013561 285 --SF----------LVR---LSQIGVDEWLRAPSVEDVFALGDCAGFLEQT-GKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 285 --~~----------~~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~-G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
+. +.. -|+|.||+++|| +.|+|||+|||+..++.. |++..+++++.|.+||+++|+||.
T Consensus 228 a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 228 ATGIKPNSELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CCCccCCHHHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 00 000 078999999999 999999999999765432 333346799999999999999996
No 59
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.78 E-value=1.8e-18 Score=172.29 Aligned_cols=219 Identities=19% Similarity=0.246 Sum_probs=150.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCccccc-chhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMVFTP-LLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL- 184 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~~~~-ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 184 (441)
-+.++|||+|++|..|+..++..| .+++++-++.++.|.+ .|+....- ..+. ++.....+.+..+++++.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~--~~~~----~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLT--VGEG----LAKRTPEFYKEKGIELILG 147 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceee--cccc----ccccChhhHhhcCceEEEc
Confidence 468999999999999999998866 4799998888877664 22221110 0111 111111123334666554
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHHh-cc
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLLN-LM 262 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~~-~~ 262 (441)
+.|+.+|...+++.+.++ +.+.||+|+||||+.|+.+++||.+ +++.++++++|+..+...+... ..
T Consensus 148 t~v~~~D~~~K~l~~~~G-----------e~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~v 216 (478)
T KOG1336|consen 148 TSVVKADLASKTLVLGNG-----------ETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKV 216 (478)
T ss_pred ceeEEeeccccEEEeCCC-----------ceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceE
Confidence 589999999999988774 4899999999999999999999997 8899999999999887665321 11
Q ss_pred cccCCCCceeEeeCc-----eEEE--------------------------------------------------------
Q 013561 263 LSENPGDTVQLFSKY-----FVIT-------------------------------------------------------- 281 (441)
Q Consensus 263 ~a~~~G~~~vE~a~~-----v~V~-------------------------------------------------------- 281 (441)
+...+|..++|++.. ..|+
T Consensus 217 V~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d 296 (478)
T KOG1336|consen 217 VCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD 296 (478)
T ss_pred EEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc
Confidence 111245555554411 1111
Q ss_pred ---------Ec--------cCCc-----ccCCceeeCCCcccCCCCCEEEecccccccccC-CCCCCCchHHHHHHHHHH
Q 013561 282 ---------IT--------LSFL-----VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQT-GKPVLPALAQVAERQGKY 338 (441)
Q Consensus 282 ---------il--------~~~~-----~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~-G~~~~p~~a~~A~~qg~~ 338 (441)
++ +-+. ...|.|.||+.||| ++|||||+||+++++-+. +.......++.|..+|+.
T Consensus 297 g~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~ 375 (478)
T KOG1336|consen 297 GKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQ 375 (478)
T ss_pred CCEeccCeEEEeeccccccccccccceecccCCEeehhceee-ccCCcccccceeecccccccccccchHHHHHHHHHHh
Confidence 00 0000 00199999999999 899999999999986432 222235789999999998
Q ss_pred HHHHHHH
Q 013561 339 LAELFNK 345 (441)
Q Consensus 339 aA~nI~~ 345 (441)
+...|..
T Consensus 376 av~ai~~ 382 (478)
T KOG1336|consen 376 AVKAIKM 382 (478)
T ss_pred hhhhhhc
Confidence 8888773
No 60
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.78 E-value=1.6e-18 Score=179.95 Aligned_cols=216 Identities=21% Similarity=0.298 Sum_probs=158.1
Q ss_pred CCcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCcccc-cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMVFT-PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~~~-~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
+.++||||.|++|..+..++.. .-++||+|-..++..|. .+|..+..|..+.+++.....++ .+..++..+.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dw----y~~~~i~L~~ 78 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDW----YEENGITLYT 78 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhh----HHHcCcEEEc
Confidence 5689999999999988877755 55899999999988776 56666666655655555444443 3345677666
Q ss_pred E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHHhc-
Q 013561 185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLLNL- 261 (441)
Q Consensus 185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~~~- 261 (441)
+ .|+.||..++.|+.+.+ .++.||.||+||||.|+.+++||.+ ..++.+++++|...+...- ...
T Consensus 79 ~~~v~~idr~~k~V~t~~g-----------~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a-r~~~ 146 (793)
T COG1251 79 GEKVIQIDRANKVVTTDAG-----------RTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA-RNKK 146 (793)
T ss_pred CCeeEEeccCcceEEccCC-----------cEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH-hccC
Confidence 5 89999999999987664 4789999999999999999999987 7889999999998877652 221
Q ss_pred --ccccCCCCceeEeeCc--------------------------------------eEEE-------Ecc----------
Q 013561 262 --MLSENPGDTVQLFSKY--------------------------------------FVIT-------ITL---------- 284 (441)
Q Consensus 262 --~~a~~~G~~~vE~a~~--------------------------------------v~V~-------il~---------- 284 (441)
.+.+ +|.-|+|.|.. +++. ++.
T Consensus 147 ~avVIG-GGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~ 225 (793)
T COG1251 147 KAVVIG-GGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFA 225 (793)
T ss_pred CcEEEc-cchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeec
Confidence 1222 45555554410 1111 000
Q ss_pred --------------CCcccC-----------CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHH
Q 013561 285 --------------SFLVRL-----------SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYL 339 (441)
Q Consensus 285 --------------~~~~~l-----------G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~a 339 (441)
.+-+.. ..|+||++||| +.|+|||+|+|++.. | ....++-.+..||+++
T Consensus 226 DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~mqT-sdpdIYAvGEcae~~---g--~~yGLVaP~yeq~~v~ 299 (793)
T COG1251 226 DGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQT-SDPDIYAVGECAEHR---G--KVYGLVAPLYEQAKVL 299 (793)
T ss_pred CCCcccceeEEEecccccccHhHHhcCcCcCCCeeecccccc-cCCCeeehhhHHHhc---C--ccceehhHHHHHHHHH
Confidence 000000 46999999999 999999999999763 4 3667899999999999
Q ss_pred HHHHHHHh
Q 013561 340 AELFNKKI 347 (441)
Q Consensus 340 A~nI~~~l 347 (441)
|+++....
T Consensus 300 a~hl~~~~ 307 (793)
T COG1251 300 ADHLCGGE 307 (793)
T ss_pred HHHhccCc
Confidence 99998443
No 61
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.78 E-value=1.3e-18 Score=180.89 Aligned_cols=45 Identities=33% Similarity=0.433 Sum_probs=40.9
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK 345 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~ 345 (441)
|+|.||+++|| +.|+|||+|||+. .++++..|+.||+++|.||..
T Consensus 286 g~i~vd~~~~t-s~~~IyA~GD~~~---------~~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 286 GRPVVDEHTQT-SVPGIYAAGDVNG---------KPPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred CcEeECCCccc-CCCCEEEEEecCC---------CccchhHHHHHHHHHHHHhcC
Confidence 78999999999 9999999999992 357899999999999999973
No 62
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.77 E-value=4e-18 Score=178.72 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC--------Cccc----ccchhhh-----------------hcCCC-
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN--------HMVF----TPLLAST-----------------CVGTL- 158 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~--------~~~~----~~ll~~~-----------------~~g~~- 158 (441)
..+|+||||||||++||..+++.|.+|+|||+.+ .++- ..+.|.. ..|..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 4589999999999999999999999999999631 1211 1111210 01111
Q ss_pred ----Cccccccchhhhhh-------hhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561 159 ----EFRSVAEPVSRIQT-------SLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227 (441)
Q Consensus 159 ----~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs 227 (441)
+...+....+...+ ...+..++.++.+++..++ .++|.+.+.. +...+.||+||||||+
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~--~~~v~v~~~~--------~~~~i~~d~lIIATGs 154 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD--EHTVSYGDNS--------QEETITAKYILIATGG 154 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc--CCEEEEeeCC--------CceEEECCEEEEecCC
Confidence 11111111111100 0112257788888776543 4566665321 1236899999999999
Q ss_pred CcCCC-CCCCcccc
Q 013561 228 EPLTF-GIKGVKEN 240 (441)
Q Consensus 228 ~p~~~-~ipG~~~~ 240 (441)
.|+.| ++||.++.
T Consensus 155 ~p~~p~~i~G~~~~ 168 (499)
T PTZ00052 155 RPSIPEDVPGAKEY 168 (499)
T ss_pred CCCCCCCCCCccce
Confidence 99988 49987543
No 63
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.76 E-value=1.1e-18 Score=183.69 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=73.5
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccc----hhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPL----LASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY 183 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~l----l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 183 (441)
..++|+||||||||++||..|++.|++|+||++. ++.... ++... +... .......+.+.+.+.+ .++.+.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~-~~~~-~~~~~l~~~l~~~l~~-~gv~i~ 285 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLI-SVPY-TTGSQLAANLEEHIKQ-YPIDLM 285 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCccccc-ccCC-CCHHHHHHHHHHHHHH-hCCeEE
Confidence 3679999999999999999999999999999753 221110 11110 1100 0000111122121222 356665
Q ss_pred E-EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561 184 L-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK 238 (441)
Q Consensus 184 ~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~ 238 (441)
. .+|.+++.+.+.+.+...+. ..+.||+||+|||+.|+.+++||..
T Consensus 286 ~~~~V~~I~~~~~~~~v~~~~g---------~~i~~d~lIlAtGa~~~~~~ipG~~ 332 (515)
T TIGR03140 286 ENQRAKKIETEDGLIVVTLESG---------EVLKAKSVIVATGARWRKLGVPGEK 332 (515)
T ss_pred cCCEEEEEEecCCeEEEEECCC---------CEEEeCEEEECCCCCcCCCCCCCHH
Confidence 5 57888887665555443211 2689999999999999999999963
No 64
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.75 E-value=1.9e-19 Score=165.80 Aligned_cols=185 Identities=26% Similarity=0.312 Sum_probs=113.7
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc-cchhhhhc-CCCCccccccchh--hhhhhhcCCCCEEE-EEE
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT-PLLASTCV-GTLEFRSVAEPVS--RIQTSLSSDPNSYF-YLA 185 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~-~ll~~~~~-g~~~~~~~~~~~~--~~~~~~~~~~~v~~-~~~ 185 (441)
+|+||||||||++||..|++.+++|+|||+.+...+. ..++.... ............+ ...+.+. ..++.+ +..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLK-NRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHH-HHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccc-cceEEEeecc
Confidence 6999999999999999999999999999998755432 11111110 0000000000000 1111111 235666 557
Q ss_pred EEEEEeCCCCEE-----EEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH-
Q 013561 186 SCIGIDTDKHEV-----YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL- 259 (441)
Q Consensus 186 ~v~~id~~~~~v-----~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~- 259 (441)
++.+|+...+.+ .+.... .++..++.||+||||||+.|+.|++||. +.....+++.++..+......
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~ 152 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVE------TGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELLESP 152 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEE------TTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHSSTT
T ss_pred ccccccccccccccCcccceeec------cCCceEecCCeeeecCccccceeecCCC-cccccccccccccccccccccc
Confidence 889999888853 221110 1234589999999999999999999997 345556778888877765421
Q ss_pred -hcccccCCC---CceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEeccccccc
Q 013561 260 -NLMLSENPG---DTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFL 317 (441)
Q Consensus 260 -~~~~a~~~G---~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~ 317 (441)
.+.+.+... ..++++ ++. |+|.||+++|| +.|+|||+|||+.++
T Consensus 153 ~~v~VvG~~~l~~~~~~~~------------~~~-g~i~vd~~~~t-~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 153 KRVAVVGTEFLAEKLGVEL------------DEN-GFIKVDENLQT-SVPGIYAAGDCAGIY 200 (201)
T ss_dssp SEEEEESTTTSTHHTTSTB------------TTT-SSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccc------------ccc-ccccccccccc-ccccccccccccccC
Confidence 111111000 000111 111 89999999999 899999999999653
No 65
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.2e-17 Score=163.21 Aligned_cols=218 Identities=14% Similarity=0.029 Sum_probs=126.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCccc---ccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVF---TPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~---~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
..+|+|||||||||+||.++++.+.+ ++|+|....-++ ....+..+ |..... ....+.+....+....++++..
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venyp-g~~~~~-~g~~L~~~~~~~a~~~~~~~~~ 80 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYP-GFPGGI-LGPELMEQMKEQAEKFGVEIVE 80 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCC-CCccCC-chHHHHHHHHHHHhhcCeEEEE
Confidence 56899999999999999999999988 666665432211 11111111 111111 1112222222234456888888
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc----cccccccCHhHH----------
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK----ENAYFLREVNHA---------- 250 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~----~~~~~l~~~~~a---------- 250 (441)
..|..++...+.+.+...+ .++.+++||||||+.++.|++||.. .+++++ ...|.
T Consensus 81 ~~v~~v~~~~~~F~v~t~~----------~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc-~~cdg~~~~k~v~Vi 149 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDK----------GTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYC-ATCDGFFKGKDVVVI 149 (305)
T ss_pred EEEEEEeecCceEEEEECC----------CeEEEeEEEECcCCcccCCCCCcchhhcCCceEEe-eecCccccCCeEEEE
Confidence 8899998776455555432 2589999999999999999888753 222222 22222
Q ss_pred ----------HHHHHHH----------------------HHh--ccc------ccCCC--CceeEeeCc---eEEE----
Q 013561 251 ----------QEIRKKL----------------------LLN--LML------SENPG--DTVQLFSKY---FVIT---- 281 (441)
Q Consensus 251 ----------~~~~~~i----------------------~~~--~~~------a~~~G--~~~vE~a~~---v~V~---- 281 (441)
..+.+.. ... +.+ -...| ..++.+... .+..
T Consensus 150 GgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~g 229 (305)
T COG0492 150 GGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDG 229 (305)
T ss_pred cCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEece
Confidence 1111110 000 000 00001 112222210 0000
Q ss_pred ------------EccCCc--ccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 013561 282 ------------ITLSFL--VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 282 ------------il~~~~--~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l 347 (441)
++..+. .+.|+|.||+.++| |+|+|||+||++... .+++..|..+|..||.++.++|
T Consensus 230 vf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~T-svpGifAaGDv~~~~--------~rqi~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 230 VFIAIGHLPNTELLKGLGVLDENGYIVVDEEMET-SVPGIFAAGDVADKN--------GRQIATAAGDGAIAALSAERYL 300 (305)
T ss_pred EEEecCCCCchHHHhhccccCCCCcEEcCCCccc-CCCCEEEeEeeccCc--------ccEEeehhhhHHHHHHHHHHHh
Confidence 000000 01289999999999 999999999999431 2378899999999999999988
Q ss_pred c
Q 013561 348 G 348 (441)
Q Consensus 348 ~ 348 (441)
.
T Consensus 301 ~ 301 (305)
T COG0492 301 E 301 (305)
T ss_pred h
Confidence 5
No 66
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.73 E-value=2.5e-17 Score=165.54 Aligned_cols=48 Identities=31% Similarity=0.289 Sum_probs=43.3
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|+|.||++++| +.|+|||+|||+. .|..+..|+.||+.+|.+|.++|.
T Consensus 303 g~i~vd~~~~t-~~~~vyaiGD~~~---------~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 303 GEIVVDEKHMT-SREGVFAAGDVVT---------GPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CcEeeCCCccc-CCCCEEEEccccc---------CcchHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999 8999999999982 357899999999999999999885
No 67
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.72 E-value=2.3e-17 Score=173.95 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=72.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccccc----chhhhhcCC--CCccccccchhhhhhhhcCCCCEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTP----LLASTCVGT--LEFRSVAEPVSRIQTSLSSDPNSYF 182 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~----ll~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~v~~ 182 (441)
..+|+||||||||++||.+|++.|++|+||++. ++... .++... +. ....++...+... +.+ .++.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~---~~~-~gv~i 283 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFI-SVPETEGPKLAAALEEH---VKE-YDVDI 283 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccC-CCCCCCHHHHHHHHHHH---HHH-CCCEE
Confidence 579999999999999999999999999999864 21110 000000 00 0111111122221 222 34555
Q ss_pred EE-EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561 183 YL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK 238 (441)
Q Consensus 183 ~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~ 238 (441)
.. .+|.+++...+...+...+. .++.||+||+|||+.|+.+++||.+
T Consensus 284 ~~~~~V~~I~~~~~~~~V~~~~g---------~~i~a~~vViAtG~~~r~~~ipG~~ 331 (517)
T PRK15317 284 MNLQRASKLEPAAGLIEVELANG---------AVLKAKTVILATGARWRNMNVPGED 331 (517)
T ss_pred EcCCEEEEEEecCCeEEEEECCC---------CEEEcCEEEECCCCCcCCCCCCCHH
Confidence 54 57889987655554443211 3689999999999999999999864
No 68
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.71 E-value=3.8e-16 Score=162.75 Aligned_cols=162 Identities=22% Similarity=0.309 Sum_probs=112.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||++|+++|..|++.|.+|+|+++.+++. + . .+.++...+.+. +. ..++.++.+ .+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--~--------~-~d~~~~~~l~~~---l~-~~gV~i~~~~~v 236 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL--P--------N-EDAEVSKEIAKQ---YK-KLGVKILTGTKV 236 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC--C--------c-cCHHHHHHHHHH---HH-HCCCEEEECCEE
Confidence 5799999999999999999999999999999887654 1 1 111222222222 33 347777654 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
.+++.+.+.+.+.....+ ++..++++|.||+|+|.+|+...+ +.+
T Consensus 237 ~~i~~~~~~~~v~~~~~~-----g~~~~i~~D~vi~a~G~~pn~~~l-~l~----------------------------- 281 (466)
T PRK07818 237 ESIDDNGSKVTVTVSKKD-----GKAQELEADKVLQAIGFAPRVEGY-GLE----------------------------- 281 (466)
T ss_pred EEEEEeCCeEEEEEEecC-----CCeEEEEeCEEEECcCcccCCCCC-Cch-----------------------------
Confidence 888765554433211000 122468999999999999876421 110
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
..++++. .. |+|.||+++|| +.|+|||+|||+ + .+++++.|++||++||.||.
T Consensus 282 -~~g~~~~------------~~-g~i~vd~~~~T-s~p~IyAiGD~~------~---~~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 282 -KTGVALT------------DR-GAIAIDDYMRT-NVPHIYAIGDVT------A---KLQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred -hcCcEEC------------CC-CcEeeCCCccc-CCCCEEEEeecC------C---CcccHhHHHHHHHHHHHHHc
Confidence 0011111 11 78999999999 999999999998 2 36799999999999999997
No 69
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.71 E-value=4.7e-16 Score=162.41 Aligned_cols=162 Identities=21% Similarity=0.231 Sum_probs=113.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||+|++|+++|..|++.|.+|||+++.+++. + ..+ .++...+.+. +. ..++.++.+ .+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~--------~~d-~~~~~~~~~~---l~-~~gi~i~~~~~v 247 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL--A--------AAD-EQVAKEAAKA---FT-KQGLDIHLGVKI 247 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC--C--------cCC-HHHHHHHHHH---HH-HcCcEEEeCcEE
Confidence 5799999999999999999999999999999988654 1 111 1222222222 33 346777654 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
.+++.+.+.+.+...+.+ +++.++++|.|++|+|.+|+...+... .
T Consensus 248 ~~i~~~~~~v~v~~~~~~-----g~~~~i~~D~vl~a~G~~p~~~~l~~~----------------------~------- 293 (475)
T PRK06327 248 GEIKTGGKGVSVAYTDAD-----GEAQTLEVDKLIVSIGRVPNTDGLGLE----------------------A------- 293 (475)
T ss_pred EEEEEcCCEEEEEEEeCC-----CceeEEEcCEEEEccCCccCCCCCCcH----------------------h-------
Confidence 888866555544321110 222478999999999999986532110 0
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.++++. .. |+|.||+++|| +.|+|||+|||+. .|+++..|..||+.+|+||.
T Consensus 294 --~g~~~~------------~~-G~i~vd~~~~T-s~~~VyA~GD~~~---------~~~~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 294 --VGLKLD------------ER-GFIPVDDHCRT-NVPNVYAIGDVVR---------GPMLAHKAEEEGVAVAERIA 345 (475)
T ss_pred --hCceeC------------CC-CeEeECCCCcc-CCCCEEEEEeccC---------CcchHHHHHHHHHHHHHHHc
Confidence 001111 11 78999999999 9999999999982 36799999999999999996
No 70
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.70 E-value=2.7e-16 Score=163.18 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=112.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
+++|+|||||+.|+++|..|++.|.+||+|++.+++. + ..+ .++...+.+. + + .++.++. ..+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--~--------~~d-~~~~~~l~~~---~-~-~gI~i~~~~~V 232 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--R--------HLD-EDISDRFTEI---A-K-KKWDIRLGRNV 232 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--c--------ccC-HHHHHHHHHH---H-h-cCCEEEeCCEE
Confidence 5799999999999999999999999999999987653 1 111 1222223222 2 2 2466654 478
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
.+++.+++.+.+...+ + .++++|.|++|+|.+|+...+....
T Consensus 233 ~~i~~~~~~v~v~~~~-g--------~~i~~D~vl~a~G~~pn~~~l~~~~----------------------------- 274 (452)
T TIGR03452 233 TAVEQDGDGVTLTLDD-G--------STVTADVLLVATGRVPNGDLLDAEA----------------------------- 274 (452)
T ss_pred EEEEEcCCeEEEEEcC-C--------CEEEcCEEEEeeccCcCCCCcCchh-----------------------------
Confidence 8887655555554321 1 3789999999999999865322110
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.++++.+ . |+|.||+++|| +.|+|||+|||+. .+++++.|.+||+++|+||.
T Consensus 275 --~gl~~~~------------~-G~i~vd~~~~T-s~~~IyA~GD~~~---------~~~l~~~A~~~g~~~a~ni~ 326 (452)
T TIGR03452 275 --AGVEVDE------------D-GRIKVDEYGRT-SARGVWALGDVSS---------PYQLKHVANAEARVVKHNLL 326 (452)
T ss_pred --cCeeECC------------C-CcEeeCCCccc-CCCCEEEeecccC---------cccChhHHHHHHHHHHHHhc
Confidence 0112211 1 78999999999 9999999999992 35789999999999999997
No 71
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.69 E-value=5.8e-16 Score=165.86 Aligned_cols=167 Identities=19% Similarity=0.241 Sum_probs=111.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||++|+++|..|++.|.+||+||+.+++. + ..+ .++...+.+. +.+..++.++.+ .|
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll--~--------~~d-~eis~~l~~~---ll~~~GV~I~~~~~V 377 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL--P--------LLD-ADVAKYFERV---FLKSKPVRVHLNTLI 377 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc--c--------cCC-HHHHHHHHHH---HhhcCCcEEEcCCEE
Confidence 5689999999999999999999999999999988654 1 111 1122222222 223356777655 67
Q ss_pred EEEeCCCC--EEEEEecCCCCCCCC------CCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH
Q 013561 188 IGIDTDKH--EVYCETVNNGKLSHE------PHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL 259 (441)
Q Consensus 188 ~~id~~~~--~v~~~~~~~~~~~~~------~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~ 259 (441)
.+|+..++ .+.+...+....+.. .+..++++|.|++|+|.+|+...+. .+.
T Consensus 378 ~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~-l~~-------------------- 436 (659)
T PTZ00153 378 EYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLG-LDK-------------------- 436 (659)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCC-chh--------------------
Confidence 88875442 244432110000000 0113689999999999999865321 100
Q ss_pred hcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCC------CCCEEEecccccccccCCCCCCCchHHHHH
Q 013561 260 NLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPS------VEDVFALGDCAGFLEQTGKPVLPALAQVAE 333 (441)
Q Consensus 260 ~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~------~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~ 333 (441)
. ++++ + + |+|.||++||| + +|+|||+|||+ | .+++++.|.
T Consensus 437 -~---------gi~~------------~-~-G~I~VDe~lqT-s~~~~~~v~~IYAiGDv~------g---~~~La~~A~ 482 (659)
T PTZ00153 437 -L---------KIQM------------K-R-GFVSVDEHLRV-LREDQEVYDNIFCIGDAN------G---KQMLAHTAS 482 (659)
T ss_pred -c---------CCcc------------c-C-CEEeECCCCCc-CCCCCCCCCCEEEEEecC------C---CccCHHHHH
Confidence 0 0011 0 1 78999999999 5 69999999998 3 368999999
Q ss_pred HHHHHHHHHHH
Q 013561 334 RQGKYLAELFN 344 (441)
Q Consensus 334 ~qg~~aA~nI~ 344 (441)
.||+.+|+||.
T Consensus 483 ~qg~~aa~ni~ 493 (659)
T PTZ00153 483 HQALKVVDWIE 493 (659)
T ss_pred HHHHHHHHHHc
Confidence 99999999997
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.65 E-value=3e-16 Score=162.54 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=69.5
Q ss_pred CCCcEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcccccchhhhhcCC-CCccccccchhhhhhhhcCCCCEEEEE
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMVFTPLLASTCVGT-LEFRSVAEPVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~~~~ll~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (441)
+++||+||||||||++||..|++ .|++|+|||+.+..+ +++ .+|. +++......+..... +....++.|..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg--Glv---r~gvaP~~~~~k~v~~~~~~-~~~~~~v~~~~ 98 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF--GLV---RSGVAPDHPETKNVTNQFSR-VATDDRVSFFG 98 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc--ceE---eeccCCCcchhHHHHHHHHH-HHHHCCeEEEc
Confidence 46799999999999999999986 799999999998654 232 2222 222211111122211 23345677766
Q ss_pred EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCc-CCCCCCCcc
Q 013561 185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEP-LTFGIKGVK 238 (441)
Q Consensus 185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p-~~~~ipG~~ 238 (441)
+..++. .+.+.. ....||+||||||+.+ +.+++||.+
T Consensus 99 nv~vg~-----dvtl~~------------L~~~yDaVIlAtGa~~~~~l~IpG~d 136 (491)
T PLN02852 99 NVTLGR-----DVSLSE------------LRDLYHVVVLAYGAESDRRLGIPGED 136 (491)
T ss_pred CEEECc-----cccHHH------------HhhhCCEEEEecCCCCCCCCCCCCCC
Confidence 533332 233322 1347999999999985 677899864
No 73
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.65 E-value=3.7e-16 Score=151.13 Aligned_cols=176 Identities=19% Similarity=0.305 Sum_probs=129.9
Q ss_pred hhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccc
Q 013561 83 ERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRS 162 (441)
Q Consensus 83 e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~ 162 (441)
+.++++ +..+++.+. |++++|||+|++||+++.-+.+.|.+||++|-.++++ +.++ .+
T Consensus 196 kkIVSS----tgALsL~~v-------Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~----------~~mD-~E 253 (506)
T KOG1335|consen 196 KKIVSS----TGALSLKEV-------PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG----------GVMD-GE 253 (506)
T ss_pred ceEEec----CCccchhhC-------cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc----------cccC-HH
Confidence 345555 556777777 8899999999999999999999999999999888665 2223 34
Q ss_pred cccchhhhhhhhcCCCCEEEEEE-EEEEEeCCCC-EEE--EEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561 163 VAEPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKH-EVY--CETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK 238 (441)
Q Consensus 163 ~~~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~-~v~--~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~ 238 (441)
+...+++. +. ..++.|..+ +|.+++...+ .|. +.+..+ ++..+++.|.|+|++|++|.+-++ |++
T Consensus 254 isk~~qr~---L~-kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~------~k~~tle~DvlLVsiGRrP~t~GL-gle 322 (506)
T KOG1335|consen 254 ISKAFQRV---LQ-KQGIKFKLGTKVTSATRNGDGPVEIEVENAKT------GKKETLECDVLLVSIGRRPFTEGL-GLE 322 (506)
T ss_pred HHHHHHHH---HH-hcCceeEeccEEEEeeccCCCceEEEEEecCC------CceeEEEeeEEEEEccCcccccCC-Chh
Confidence 55555555 33 346777655 7888888766 444 444322 345689999999999999976532 110
Q ss_pred cccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccc
Q 013561 239 ENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLE 318 (441)
Q Consensus 239 ~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~ 318 (441)
+ .|+|. |.. |+|.||+.++| .+|+||++||+.
T Consensus 323 ~------------------------------iGi~~------------D~r-~rv~v~~~f~t-~vP~i~~IGDv~---- 354 (506)
T KOG1335|consen 323 K------------------------------IGIEL------------DKR-GRVIVNTRFQT-KVPHIYAIGDVT---- 354 (506)
T ss_pred h------------------------------ccccc------------ccc-cceeccccccc-cCCceEEecccC----
Confidence 0 01111 112 89999999999 999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 319 QTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 319 ~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
..|++|+.|..||-.+.+.|.
T Consensus 355 -----~gpMLAhkAeeegI~~VE~i~ 375 (506)
T KOG1335|consen 355 -----LGPMLAHKAEEEGIAAVEGIA 375 (506)
T ss_pred -----Ccchhhhhhhhhchhheeeec
Confidence 468999999999999998886
No 74
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.64 E-value=2.2e-16 Score=149.39 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=92.7
Q ss_pred CCcEEEECCCHHHHHHHHhhcc-CC-CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT-KI-YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS 186 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~-~g-~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 186 (441)
..+|+|||||-+|+.+|.++.+ .+ -+|.|+|+.++++|+|...-+.+|...-+.-......+ +. .+...++.+
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~l---iP--~~a~wi~ek 113 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASL---IP--KGATWIKEK 113 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCccccc---cc--CCcHHHHHH
Confidence 5689999999999999988865 33 37999999999999987654444543322222222222 22 245666788
Q ss_pred EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-----cccccccCHhHHHHHHHH
Q 013561 187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-----ENAYFLREVNHAQEIRKK 256 (441)
Q Consensus 187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-----~~~~~l~~~~~a~~~~~~ 256 (441)
|.+.++++++|.++.+ ++|.|||+|||+|-.-++..|+|.. .++....+........+.
T Consensus 114 v~~f~P~~N~v~t~gg-----------~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~ 177 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGG-----------EEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKE 177 (446)
T ss_pred HHhcCCCcCeEEccCC-----------cEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHH
Confidence 9999999999987764 4899999999999998888888864 233334444444444443
No 75
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.8e-15 Score=141.98 Aligned_cols=46 Identities=33% Similarity=0.415 Sum_probs=41.2
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK 345 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~ 345 (441)
|.|.||+.-+| ++|+|||+||+.. + .|.+...|++.||.+|+.+.+
T Consensus 319 ~KI~v~~~e~t-~vp~vyAvGDIl~-----~---kpELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 319 GKIPVDDEEAT-NVPYVYAVGDILE-----D---KPELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred CccccChHHhc-CCCceEEecceec-----C---CcccchhhhhhchHHHHHHhc
Confidence 88999999999 9999999999992 3 588999999999999999874
No 76
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=1.6e-14 Score=138.25 Aligned_cols=211 Identities=17% Similarity=0.119 Sum_probs=131.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cc------hh----------hhhcCCCCcccccc---
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PL------LA----------STCVGTLEFRSVAE--- 165 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~l------l~----------~~~~g~~~~~~~~~--- 165 (441)
..+.+|||||-+|+++|++.+..|.+|.|+|..-.++-+ ++ .+ ..-+|...-.....
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~ 99 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWK 99 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHH
Confidence 357999999999999999999999999999976332211 00 00 00112211111111
Q ss_pred --------chhhhh---hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561 166 --------PVSRIQ---TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI 234 (441)
Q Consensus 166 --------~~~~~~---~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i 234 (441)
.+.++. +.......+.++.+...-+++.+-+|...++. ...+.+.+++||||.+|..|+|
T Consensus 100 ~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~---------~~~Ytak~iLIAtGg~p~~PnI 170 (478)
T KOG0405|consen 100 VIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGT---------KIVYTAKHILIATGGRPIIPNI 170 (478)
T ss_pred HHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCe---------eEEEecceEEEEeCCccCCCCC
Confidence 111111 11223457788888887777665555554431 2357899999999999999999
Q ss_pred CCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCc-------eEEE-----EccCCccc-------------
Q 013561 235 KGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKY-------FVIT-----ITLSFLVR------------- 289 (441)
Q Consensus 235 pG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~-------v~V~-----il~~~~~~------------- 289 (441)
||.+ ..+..+...+..+... ...+.+ +|+.+||+|.- ..+. +|..||+.
T Consensus 171 pG~E-~gidSDgff~Lee~Pk----r~vvvG-aGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~g 244 (478)
T KOG0405|consen 171 PGAE-LGIDSDGFFDLEEQPK----RVVVVG-AGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRG 244 (478)
T ss_pred Cchh-hccccccccchhhcCc----eEEEEc-cceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcc
Confidence 9974 2222222222222222 223333 68888888710 0000 11111110
Q ss_pred -----------------------------------------------C------------CceeeCCCcccCCCCCEEEe
Q 013561 290 -----------------------------------------------L------------SQIGVDEWLRAPSVEDVFAL 310 (441)
Q Consensus 290 -----------------------------------------------l------------G~I~Vd~~lqt~~~~~VfA~ 310 (441)
+ |.|.||+|.+| |+|+|||+
T Consensus 245 invh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~av 323 (478)
T KOG0405|consen 245 INVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAV 323 (478)
T ss_pred eeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEe
Confidence 0 89999999999 99999999
Q ss_pred cccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 311 GDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 311 GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
||++ | ...+...|+..|+.+|+.+.
T Consensus 324 GDv~------g---k~~LTPVAiaagr~la~rlF 348 (478)
T KOG0405|consen 324 GDVT------G---KINLTPVAIAAGRKLANRLF 348 (478)
T ss_pred cccc------C---cEecchHHHhhhhhHHHHhh
Confidence 9999 4 35678889999999998887
No 77
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.52 E-value=1.9e-13 Score=154.00 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=78.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
.++|+|||||||||+||..+++.|++|+|||+.+..+ +.++... ...+.......+.+..+.+....++.+.. ++|
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~G--G~~~~~~-~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAG--GSLLSEA-ETIDGKPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC--Ceeeccc-cccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 5689999999999999999999999999999988764 2221111 01110000111122222244444566654 577
Q ss_pred EEEeCCCCEEEEEecCCC-----CCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccc
Q 013561 188 IGIDTDKHEVYCETVNNG-----KLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFL 244 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~-----~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l 244 (441)
.+++.......+...... .........++.||.||||||+.++.+++||.+ ++++..
T Consensus 240 ~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~ 302 (985)
T TIGR01372 240 FGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLA 302 (985)
T ss_pred EEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEc
Confidence 777653322222211000 000000112588999999999999999999975 455443
No 78
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.50 E-value=2.2e-13 Score=138.81 Aligned_cols=215 Identities=20% Similarity=0.154 Sum_probs=137.4
Q ss_pred EEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcccc--cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE
Q 013561 112 VVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMVFT--PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC 187 (441)
Q Consensus 112 VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~~~--~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 187 (441)
++|||+|++|+++|..|.+ .+.+|+++..++...|. ++.+.+..+....+....... . ..+.....+...+|
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~v 76 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-F---NRATGIDVRTGTEV 76 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-h---HHhhCCEEeeCCEE
Confidence 5899999999999998876 45688877777655443 333333333333322222222 1 11112334445689
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH--hccccc
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL--NLMLSE 265 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~--~~~~a~ 265 (441)
..+|.+.+.+.+.++ ++.||+|++|||++|..++ .......+.++..+++..+...... .+.+.+
T Consensus 77 ~~id~~~~~v~~~~g------------~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG 143 (415)
T COG0446 77 TSIDPENKVVLLDDG------------EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVG 143 (415)
T ss_pred EEecCCCCEEEECCC------------cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhccCeEEEEC
Confidence 999999999987763 6899999999999998876 2223567788999998888765532 111111
Q ss_pred CCCCceeEeeC--------------------------------------ceE---------------------EE-----
Q 013561 266 NPGDTVQLFSK--------------------------------------YFV---------------------IT----- 281 (441)
Q Consensus 266 ~~G~~~vE~a~--------------------------------------~v~---------------------V~----- 281 (441)
+|..|+|+|. +++ +.
T Consensus 144 -~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 222 (415)
T COG0446 144 -AGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE 222 (415)
T ss_pred -CcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc
Confidence 2222211110 000 01
Q ss_pred --------EccCCcc--------------cCCceeeCCCcccCC-CCCEEEecccccccccC-CCCCCCchHHHHHHHHH
Q 013561 282 --------ITLSFLV--------------RLSQIGVDEWLRAPS-VEDVFALGDCAGFLEQT-GKPVLPALAQVAERQGK 337 (441)
Q Consensus 282 --------il~~~~~--------------~lG~I~Vd~~lqt~~-~~~VfA~GD~a~~~~~~-G~~~~p~~a~~A~~qg~ 337 (441)
+.+...+ ..|.|.||+++++ + .++|||+|||+.++... +.....+.++.|..+++
T Consensus 223 ~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~-~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~ 301 (415)
T COG0446 223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGT-SKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGR 301 (415)
T ss_pred EEEeeEEEEeecccccHHHHhhCccceeccCCCEEEcccccc-CCCCCEEeccceEeeecccCCceeeeechhhHhhhhH
Confidence 0000000 0168999999999 6 89999999999887543 33345788999999999
Q ss_pred HHHHHHHH
Q 013561 338 YLAELFNK 345 (441)
Q Consensus 338 ~aA~nI~~ 345 (441)
.++.++..
T Consensus 302 i~~~~~~~ 309 (415)
T COG0446 302 IAAENIAG 309 (415)
T ss_pred HHHHHhcc
Confidence 99999984
No 79
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.4e-13 Score=128.50 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=67.0
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccc---hhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPL---LASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY 183 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~l---l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 183 (441)
+.+.+|+||||||||-++|.+.+++|.+.-|+- ++|+-+.+ -.+...+.++-+ -......+..+.++ -.+.+.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IENfIsv~~te-Gpkl~~ale~Hv~~-Y~vDim 284 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIENFISVPETE-GPKLAAALEAHVKQ-YDVDVM 284 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchhheecccccc-chHHHHHHHHHHhh-cCchhh
Confidence 447899999999999999999999998877662 23332221 000011111111 01111122222222 233333
Q ss_pred EE-EEEEEeCC-----CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCccc
Q 013561 184 LA-SCIGIDTD-----KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKE 239 (441)
Q Consensus 184 ~~-~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~ 239 (441)
+. +.+.+.+. .-+|++.++ -.+....+||+||++-+..++||.++
T Consensus 285 n~qra~~l~~a~~~~~l~ev~l~nG-----------avLkaktvIlstGArWRn~nvPGE~e 335 (520)
T COG3634 285 NLQRASKLEPAAVEGGLIEVELANG-----------AVLKARTVILATGARWRNMNVPGEDE 335 (520)
T ss_pred hhhhhhcceecCCCCccEEEEecCC-----------ceeccceEEEecCcchhcCCCCchHH
Confidence 22 34444432 224445443 26789999999999999999999763
No 80
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.7e-12 Score=113.41 Aligned_cols=115 Identities=14% Similarity=0.049 Sum_probs=78.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc---cc--------hhhhhcCCCCccccccchhhhhhhhcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT---PL--------LASTCVGTLEFRSVAEPVSRIQTSLSSD 177 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~---~l--------l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (441)
..+|+|||+|||+.++|.++++...+-+|||-.---... .+ .|+++-|..-+ .+.+.......+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~-----~l~d~mrkqs~r 82 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGP-----ELMDKMRKQSER 82 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccH-----HHHHHHHHHHHh
Confidence 358999999999999999999988899999863211100 00 12222222111 122222223444
Q ss_pred CCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561 178 PNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK 238 (441)
Q Consensus 178 ~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~ 238 (441)
.+.+++..+|.++|.+.+-+.+... .+.+.+|.+|+|||+..+...+||..
T Consensus 83 ~Gt~i~tEtVskv~~sskpF~l~td----------~~~v~~~avI~atGAsAkRl~~pg~g 133 (322)
T KOG0404|consen 83 FGTEIITETVSKVDLSSKPFKLWTD----------ARPVTADAVILATGASAKRLHLPGEG 133 (322)
T ss_pred hcceeeeeehhhccccCCCeEEEec----------CCceeeeeEEEecccceeeeecCCCC
Confidence 5778888899999999988877663 24789999999999999888888874
No 81
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.26 E-value=1.5e-10 Score=114.16 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=42.8
Q ss_pred CceeeC---C-CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 013561 291 SQIGVD---E-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 291 G~I~Vd---~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l 347 (441)
|.|.++ + +|+...+|++|.+|.+..+...+|+ =.-++|...|..|++.+.+.+
T Consensus 351 GGV~~~eid~kTmesk~vPGLyf~GEvlDv~g~tGG----YN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 351 GGVDTKEIDSKTMESKKVPGLYFAGEVLDVTGWTGG----YNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred CceehhhcCHHHHHhhcCCCcEEEEEEEEeccCCCc----HHHHHHHHHHHHHHHhhhhhc
Confidence 777654 3 4888889999999999988766665 378999999999999987654
No 82
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.26 E-value=1.3e-11 Score=128.06 Aligned_cols=127 Identities=15% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch----------------------hh-h-------hcC
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL----------------------AS-T-------CVG 156 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll----------------------~~-~-------~~g 156 (441)
.+.++|+|||||++||.||+.|.+.|++|+|||+++..+-.... +. . ..+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 34689999999999999999999999999999998866411100 00 0 000
Q ss_pred CCCc---cc------------cccchhhhhhhhcCCCCEE---EEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeC
Q 013561 157 TLEF---RS------------VAEPVSRIQTSLSSDPNSY---FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAY 218 (441)
Q Consensus 157 ~~~~---~~------------~~~~~~~~~~~~~~~~~v~---~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~y 218 (441)
..++ .. ....+.+..+.+.+..++. ..+.+|+.|+...+.+.+.....+ +...+..|
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~-----~~~~~~~~ 162 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG-----GFSKDEIF 162 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC-----CceEEEEc
Confidence 0000 00 0011222222223222322 235689999887776666543211 11225679
Q ss_pred CEEEEcCC--CCcCCCCCCCcc
Q 013561 219 DKLVIAAG--AEPLTFGIKGVK 238 (441)
Q Consensus 219 D~LvlAtG--s~p~~~~ipG~~ 238 (441)
|+|||||| +.|+.|.+||.+
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~ 184 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIK 184 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcc
Confidence 99999999 679999999975
No 83
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.22 E-value=1.3e-11 Score=126.89 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=105.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhh----------------------cCC------CCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTC----------------------VGT------LEF 160 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~----------------------~g~------~~~ 160 (441)
..+++|||+||||..+|.++++.|.+|.+||+...++- .|++..| .|. .++
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGG-tCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG-TCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCc-eEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 57899999999999999999999999999999964431 2211111 111 111
Q ss_pred cccccchhhh-------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 161 RSVAEPVSRI-------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 161 ~~~~~~~~~~-------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
+.+....+.. ...+.+..+++++.+...-++ .++|.+... +.+++.+|++||||||+|..|+
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~---------~~~~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGE---------DKETITADNIIIATGSRPRIPP 151 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCC---------CceEEEeCEEEEcCCCCCcCCC
Confidence 1111111111 112344568888888887766 566766652 1248999999999999999999
Q ss_pred CCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC-----ceEEE-------EccCCcccC
Q 013561 234 IKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK-----YFVIT-------ITLSFLVRL 290 (441)
Q Consensus 234 ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~-----~v~V~-------il~~~~~~l 290 (441)
+||.++.- +-+.+++..+. .+.+.+.+.+ +|+.|+|+|. +.+|| +|+.+|+++
T Consensus 152 ~~~~~~~~--~~~s~~~l~~~-~lP~~lvIiG-gG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei 216 (454)
T COG1249 152 GPGIDGAR--ILDSSDALFLL-ELPKSLVIVG-GGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEI 216 (454)
T ss_pred CCCCCCCe--EEechhhcccc-cCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHH
Confidence 88875321 22233333333 3344555666 7999999983 35555 667777665
No 84
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.22 E-value=3.2e-11 Score=118.14 Aligned_cols=219 Identities=20% Similarity=0.258 Sum_probs=138.2
Q ss_pred cEEEECCCHHHHHHHHhhc--cCCCeEEEEcCCCCcccc--cchhhhh-cCCCC------c-------cccccchhhhh-
Q 013561 111 RVVVLGTGWGACRFLKGID--TKIYDAVCISPRNHMVFT--PLLASTC-VGTLE------F-------RSVAEPVSRIQ- 171 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~--~~g~~Vtvie~~~~~~~~--~ll~~~~-~g~~~------~-------~~~~~~~~~~~- 171 (441)
--+|||+|.+..++++... ..+.+|.+|..++...|. |+..+.- ++.+. + +++........
T Consensus 180 p~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ffv 259 (659)
T KOG1346|consen 180 PYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFFV 259 (659)
T ss_pred ceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCccee
Confidence 4699999999888877665 457899999888877654 2211111 00000 0 01111110000
Q ss_pred --hhh--cCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC-CCCc----cccc
Q 013561 172 --TSL--SSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG-IKGV----KENA 241 (441)
Q Consensus 172 --~~~--~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~-ipG~----~~~~ 241 (441)
+.+ ....++-+.++ +|+.||.+.+.|++.++ .+|.||.++||||.+|.... +... .+.+
T Consensus 260 speDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG-----------~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~ki 328 (659)
T KOG1346|consen 260 SPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDG-----------TTIGYDKCLIATGVRPKKLQVFEEASEEVKQKI 328 (659)
T ss_pred ChhHCcccccCceEEEeccceEEeecccCeEEecCC-----------cEeehhheeeecCcCcccchhhhhcCHHhhhhe
Confidence 001 12356666676 79999999999999885 38999999999999997664 2221 2456
Q ss_pred ccccCHhHHHHHHHHHHHh--cccccCCCCceeEee---------CceEEE-----------Ecc---------------
Q 013561 242 YFLREVNHAQEIRKKLLLN--LMLSENPGDTVQLFS---------KYFVIT-----------ITL--------------- 284 (441)
Q Consensus 242 ~~l~~~~~a~~~~~~i~~~--~~~a~~~G~~~vE~a---------~~v~V~-----------il~--------------- 284 (441)
..++...|..++..-+.+. +.+.+ .|..|-|++ .+++|. |||
T Consensus 329 t~fr~p~DF~rlek~~aek~siTIiG-nGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~G 407 (659)
T KOG1346|consen 329 TYFRYPADFKRLEKGLAEKQSITIIG-NGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGG 407 (659)
T ss_pred eEEecchHHHHHHHhhhhcceEEEEc-CcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcC
Confidence 6788888888877654322 22222 344443333 001110 000
Q ss_pred ----------------------------------------------------CCcccCCceeeCCCcccCCCCCEEEecc
Q 013561 285 ----------------------------------------------------SFLVRLSQIGVDEWLRAPSVEDVFALGD 312 (441)
Q Consensus 285 ----------------------------------------------------~~~~~lG~I~Vd~~lqt~~~~~VfA~GD 312 (441)
.+|..+|.+.||..|+. ..|||++||
T Consensus 408 V~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGd 485 (659)
T KOG1346|consen 408 VDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA--RENVWVAGD 485 (659)
T ss_pred ceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec--ccceeeecc
Confidence 01233388999999998 789999999
Q ss_pred cccccccC-CCCCCCchHHHHHHHHHHHHHHHH
Q 013561 313 CAGFLEQT-GKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 313 ~a~~~~~~-G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
++.+.|.. |. +.-....+|+-.||+|++||.
T Consensus 486 aacF~D~~LGr-RRVehhdhavvSGRLAGENMt 517 (659)
T KOG1346|consen 486 AACFEDGVLGR-RRVEHHDHAVVSGRLAGENMT 517 (659)
T ss_pred hhhhhcccccc-eeccccccceeeceecccccc
Confidence 99998754 43 556678889999999999997
No 85
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=99.12 E-value=5.4e-13 Score=110.54 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=50.8
Q ss_pred ccccCCCCCCCCCccccccccCCCcccCCCcccccc--cccCcCCCCcCCCcccCccchhhhhccccc
Q 013561 27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTT--HMSSWSRGIKTTPHYQYHNAERIVEESESE 92 (441)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~--ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~ 92 (441)
-|+.++++|+ |.+|++++.++|+||++||||||++ ||.+|.++ .. .++.|+.+++++.|++.+
T Consensus 44 ~~i~~i~~g~-~~~A~~~i~~~np~p~vcGrvCp~p~~Ce~~C~r~-~~-~pV~I~~l~r~~~d~~~~ 108 (111)
T PF14691_consen 44 EYIRLIREGN-FKEAYELIREDNPFPAVCGRVCPHPKQCESACRRG-KG-EPVAIRALERFIADYALE 108 (111)
T ss_dssp HHHHHHHCT--HHHHHHHHHHH-TTHHHHHHH--GGGSGGGG-GGG-ST--S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHhCCCcccccCCCCCcchHHHHccCC-CC-CCCcHHHHHHHHHHHHHH
Confidence 4889999999 9999999999999999999999998 99999999 45 577888999999997766
No 86
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.08 E-value=7.2e-11 Score=109.52 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=80.7
Q ss_pred cEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcccccchhhhhcCCCCcccccc-chhhhhhhhcCCCCEEEEEEEE
Q 013561 111 RVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAE-PVSRIQTSLSSDPNSYFYLASC 187 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~v 187 (441)
+.+|||||.||++||.+|+. ...+|.++..++..--...+..+. -.++.-++.+ ....+ .+..+ +|+.. |
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~-~ylekfdv~eq~~~el---g~~f~--~~~~~-v 73 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIG-QYLEKFDVKEQNCHEL---GPDFR--RFLND-V 73 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHH-HHHHhcCccccchhhh---cccHH--HHHHh-h
Confidence 46899999999999999985 346899998876331000000000 0001001110 01111 11101 23333 6
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL 259 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~ 259 (441)
..++.++..+.++++ .++.|++|++|+|++|... .+|.+..+..+++.+.+..++..+..
T Consensus 74 ~~~~s~ehci~t~~g-----------~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~k 133 (334)
T KOG2755|consen 74 VTWDSSEHCIHTQNG-----------EKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLVK 133 (334)
T ss_pred hhhccccceEEecCC-----------ceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHhh
Confidence 777888888888774 3789999999999999765 34456777888888888888877643
No 87
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.01 E-value=5.7e-10 Score=114.62 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=61.7
Q ss_pred CCCcEEEECCCHHHHHHHHhhc-cCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561 108 EKPRVVVLGTGWGACRFLKGID-TKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS 186 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~-~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 186 (441)
.+++|+||||||||+++|..|. +.|++|+|||+.+..+ +++ .+|...++.....+.+.........++.|..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg--GLv---R~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv 112 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY--GLI---RYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNV 112 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc--cEE---EEeCCCCCccHHHHHHHHHHHHhhCCeEEEeee
Confidence 4779999999999999999764 6799999999999775 332 223332221112222221111223567776432
Q ss_pred EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561 187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT 231 (441)
Q Consensus 187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~ 231 (441)
-++.| ++++. ....||+||+|+|+.+..
T Consensus 113 ~VG~D-----vt~ee------------L~~~YDAVIlAtGA~~l~ 140 (506)
T PTZ00188 113 HVGVD-----LKMEE------------LRNHYNCVIFCCGASEVS 140 (506)
T ss_pred EecCc-----cCHHH------------HHhcCCEEEEEcCCCCCC
Confidence 22221 22221 134799999999988543
No 88
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.98 E-value=1.7e-10 Score=121.56 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=66.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----------h-hhhc----------CCCCc------
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----------A-STCV----------GTLEF------ 160 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----------~-~~~~----------g~~~~------ 160 (441)
.|||+|||||++||.+|+.|...|+++|+||+++.++-.-.. + .... ..+.+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 369999999999999999999999999999999877521100 0 0000 00000
Q ss_pred ---cccccchhhhhhhhcCCCCEEEEEEEEEEEeCCC-----CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC--CcC
Q 013561 161 ---RSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDK-----HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA--EPL 230 (441)
Q Consensus 161 ---~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~-----~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs--~p~ 230 (441)
.++...++...+.+.-...++| +++|++++... ....+....+ ++..+..||+||||||. .|+
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~f-nt~V~~v~~~~d~~~~~~W~V~~~~~------g~~~~~~fD~VvvatG~~~~P~ 153 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRF-NTEVVSVERDPDFSATGKWEVTTEND------GKEETEEFDAVVVATGHFSKPN 153 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEET-SEEEEEEEEETTTT-ETEEEEEETTT------TEEEEEEECEEEEEE-SSSCES
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEE-ccEEeEeeeccccCCCceEEEEeecC------CeEEEEEeCeEEEcCCCcCCCC
Confidence 1122222222222222223333 45677776432 3455544221 23345679999999994 688
Q ss_pred CCC--CCCcc
Q 013561 231 TFG--IKGVK 238 (441)
Q Consensus 231 ~~~--ipG~~ 238 (441)
.|. +||.+
T Consensus 154 ~P~~~~~G~e 163 (531)
T PF00743_consen 154 IPEPSFPGLE 163 (531)
T ss_dssp B-----CTGG
T ss_pred CChhhhhhhh
Confidence 884 89975
No 89
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.93 E-value=1.1e-09 Score=114.33 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
..+|+||||||||++||..+++.|.+|+|||++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 468999999999999999999999999999986
No 90
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.92 E-value=3.4e-09 Score=108.11 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=35.0
Q ss_pred Cceee---CC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHH
Q 013561 291 SQIGV---DE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAEL 342 (441)
Q Consensus 291 G~I~V---d~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~n 342 (441)
|.|.+ |+ +|++..+||+|++|.+-.+..+.|+ =.-|+|...|..|+++
T Consensus 358 GGV~~~eid~~TmeSk~~~gLyf~GEvLDvdG~~GG----YNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 358 GGVDLKEIDPKTMESKLVPGLYFAGEVLDVDGPCGG----YNLQWAWSSGYLAGKY 409 (409)
T ss_dssp EEE-GGGB-TTT-BBSSSTTEEE-GGGBSEEE-TTT----HHHHHHHHHHHHHHH-
T ss_pred CCcCHHHCCHhhhcccCCCCeEEEEEEEEeccCcCc----hhHhHHHHHHHHhhCC
Confidence 77765 44 6888889999999999988766665 3789999999999875
No 91
>PLN02463 lycopene beta cyclase
Probab=98.91 E-value=7.4e-08 Score=99.67 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=68.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----c---chh-----h-hhcCCCC-------c--cccccc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----P---LLA-----S-TCVGTLE-------F--RSVAEP 166 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~---ll~-----~-~~~g~~~-------~--~~~~~~ 166 (441)
..+|+||||||||+++|..|++.|++|+|+|+.+...+. . .+. . +...... . .....+
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~ 107 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRP 107 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCc
Confidence 469999999999999999999999999999997643221 0 000 0 0000000 0 000000
Q ss_pred --------hhh-hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561 167 --------VSR-IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL 230 (441)
Q Consensus 167 --------~~~-~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~ 230 (441)
+.+ +.+.. ...++.+..++|++|+..++.+.+...++ .++.+|+||.|+|....
T Consensus 108 y~~V~R~~L~~~Ll~~~-~~~GV~~~~~~V~~I~~~~~~~~V~~~dG---------~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 108 YGRVNRKKLKSKMLERC-IANGVQFHQAKVKKVVHEESKSLVVCDDG---------VKIQASLVLDATGFSRC 170 (447)
T ss_pred ceeEEHHHHHHHHHHHH-hhcCCEEEeeEEEEEEEcCCeEEEEECCC---------CEEEcCEEEECcCCCcC
Confidence 111 11111 23478888889999987766655543211 37899999999997654
No 92
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.84 E-value=7.2e-09 Score=107.18 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=73.5
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcc-------cccc---hhhhhcC---CCC-----cc---ccc
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMV-------FTPL---LASTCVG---TLE-----FR---SVA 164 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~-------~~~l---l~~~~~g---~~~-----~~---~~~ 164 (441)
++..+|+|||||++||.+|..|.+.|.. ++|+|+++..+ |..+ .+....+ .+. +. .+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 3467999999999999999999999998 99999997554 2111 0000001 000 00 011
Q ss_pred cchhhhhhhhcCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCC--CCcCCCCCCCccc
Q 013561 165 EPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG--AEPLTFGIKGVKE 239 (441)
Q Consensus 165 ~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG--s~p~~~~ipG~~~ 239 (441)
..+....+.+.....+.|... ++...+.+.+..++....+. ..++.+|+||+||| +.|+.|.++|.++
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~-------~~~~~a~~vV~ATG~~~~P~iP~~~G~~~ 156 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG-------TGELTADFVVVATGHLSEPYIPDFAGLDE 156 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC-------eeeEecCEEEEeecCCCCCCCCCCCCccC
Confidence 112222222222233344332 33444444455555543221 11277999999999 5799999999863
No 93
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=1.2e-08 Score=106.64 Aligned_cols=152 Identities=15% Similarity=0.098 Sum_probs=84.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcC------CCCccc----ccchhhh-----------------hcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISP------RNHMVF----TPLLAST-----------------CVGTLEFR 161 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~------~~~~~~----~~ll~~~-----------------~~g~~~~~ 161 (441)
..+|+||||||||+++|..+++.|.+|+|||+ ...++. .++.|.. ..|.. ..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~-~~ 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH-VD 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc-CC
Confidence 45899999999999999999999999999998 122211 1111110 00110 00
Q ss_pred ccccch--------------hhhhhhhcCCCCEEEEEEEEEEEeCC--CCEEEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561 162 SVAEPV--------------SRIQTSLSSDPNSYFYLASCIGIDTD--KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA 225 (441)
Q Consensus 162 ~~~~~~--------------~~~~~~~~~~~~v~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAt 225 (441)
.....+ +.....+.+..++.++.+++..++.. ..+|.+.... ..++.||+|||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~---------~~~~~~d~lViAT 153 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGED---------ETVITAKHVIIAT 153 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCC---------CeEEEeCEEEEeC
Confidence 000000 01111123446889999988777643 3455554311 1378999999999
Q ss_pred CCCcCCC-CCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEee
Q 013561 226 GAEPLTF-GIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS 275 (441)
Q Consensus 226 Gs~p~~~-~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a 275 (441)
|+.|+.+ .++.....++ +.+++..+.. ..+.+.+.+ +|..++|+|
T Consensus 154 Gs~p~~~p~~~~~~~~~~---~~~~~~~~~~-~~~~vvVvG-gG~~g~E~A 199 (475)
T PRK06327 154 GSEPRHLPGVPFDNKIIL---DNTGALNFTE-VPKKLAVIG-AGVIGLELG 199 (475)
T ss_pred CCCCCCCCCCCCCCceEE---CcHHHhcccc-cCCeEEEEC-CCHHHHHHH
Confidence 9998654 2332112222 2223322211 112334444 677888877
No 94
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.80 E-value=2.8e-08 Score=102.96 Aligned_cols=157 Identities=22% Similarity=0.293 Sum_probs=111.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||++|+++|..|++.|.+||++++.+++. + .. ..++...+.+. +. ..++.++.+ .+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--~--------~~-~~~~~~~~~~~---l~-~~GI~i~~~~~V 221 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL--P--------RE-EPSVAALAKQY---ME-EDGITFLLNAHT 221 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC--C--------CC-CHHHHHHHHHH---HH-HcCCEEEcCCEE
Confidence 5799999999999999999999999999999988654 1 11 11121122222 22 346777654 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
++++.+.+.+.+... + .+++||.||+|+|.+|+...+ +.+ +
T Consensus 222 ~~i~~~~~~v~v~~~--g--------~~i~~D~viva~G~~p~~~~l-~l~-~--------------------------- 262 (438)
T PRK07251 222 TEVKNDGDQVLVVTE--D--------ETYRFDALLYATGRKPNTEPL-GLE-N--------------------------- 262 (438)
T ss_pred EEEEecCCEEEEEEC--C--------eEEEcCEEEEeeCCCCCcccC-Cch-h---------------------------
Confidence 888876666655431 1 378999999999999985421 110 0
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.++++ +.. |.|.||+++|| +.|+|||+|||+ | .+.++..|..||+.++.++.
T Consensus 263 --~~~~~------------~~~-g~i~vd~~~~t-~~~~IyaiGD~~------~---~~~~~~~a~~~~~~~~~~~~ 314 (438)
T PRK07251 263 --TDIEL------------TER-GAIKVDDYCQT-SVPGVFAVGDVN------G---GPQFTYISLDDFRIVFGYLT 314 (438)
T ss_pred --cCcEE------------CCC-CcEEECCCccc-CCCCEEEeeecC------C---CcccHhHHHHHHHHHHHHHc
Confidence 00011 111 78999999999 999999999998 2 36789999999999998886
No 95
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.78 E-value=4.2e-08 Score=102.17 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=112.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||++|+++|..|++.|.+||++++.+++.. . .+.++...+.+. +. ..++.++.+ .+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~----------~-~d~e~~~~l~~~---L~-~~GI~i~~~~~V 234 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP----------G-EDEDIAHILREK---LE-NDGVKIFTGAAL 234 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc----------c-ccHHHHHHHHHH---HH-HCCCEEEECCEE
Confidence 57999999999999999999999999999999886541 0 111222222222 33 346777665 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
.+++.+.+.+.+... ++..++++|.|++|+|.+|+...+. .+.
T Consensus 235 ~~i~~~~~~v~~~~~--------g~~~~i~~D~vivA~G~~p~~~~l~-l~~---------------------------- 277 (458)
T PRK06912 235 KGLNSYKKQALFEYE--------GSIQEVNAEFVLVSVGRKPRVQQLN-LEK---------------------------- 277 (458)
T ss_pred EEEEEcCCEEEEEEC--------CceEEEEeCEEEEecCCccCCCCCC-chh----------------------------
Confidence 888876666655432 1123689999999999998764321 100
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.++++.+ +.|.||+++|| +.|||||+|||+ + .++++..|++||+++|.||.
T Consensus 278 --~gv~~~~--------------~gi~Vd~~~~t-s~~~VyA~GD~~------~---~~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 278 --AGVQFSN--------------KGISVNEHMQT-NVPHIYACGDVI------G---GIQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred --cCceecC--------------CCEEeCCCeec-CCCCEEEEeecC------C---CcccHHHHHHHHHHHHHHHc
Confidence 0011111 33999999999 999999999999 2 46899999999999999986
No 96
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.77 E-value=1.1e-08 Score=110.14 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
..+|+|||+|++|+.+|..+++.|.+|+|||+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 458999999999999999999999999999975
No 97
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.74 E-value=3.4e-08 Score=102.66 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=84.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc----ccchhhhh----------------cCCC------Cccc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF----TPLLASTC----------------VGTL------EFRS 162 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~----~~ll~~~~----------------~g~~------~~~~ 162 (441)
..+|+|||+||+|..+|... .|.+|+|||++. ++- .+|.|... .|.. +...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 35899999999999987554 599999999853 221 12211110 0110 1111
Q ss_pred cccch-----hhhh---hhh-c--CCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561 163 VAEPV-----SRIQ---TSL-S--SDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT 231 (441)
Q Consensus 163 ~~~~~-----~~~~---~~~-~--~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~ 231 (441)
+.... ..+. ..+ . +..+++++.+...-+ +.++|.+.++ .++.||+||||||++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~V~~~~g-----------~~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRTLRTGDG-----------EEITGDQIVIAAGSRPYI 145 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe--cCCEEEECCC-----------cEEEeCEEEEEECCCCCC
Confidence 11111 0110 001 1 225788888766544 3566665431 268999999999999988
Q ss_pred CCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEee
Q 013561 232 FGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS 275 (441)
Q Consensus 232 ~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a 275 (441)
|++++. .+ ..+.+.+++.++.+. .+.+.+.+ +|..++|+|
T Consensus 146 p~~~~~-~~-~~~~~~~~~~~l~~~-~k~vvVIG-gG~ig~E~A 185 (452)
T TIGR03452 146 PPAIAD-SG-VRYHTNEDIMRLPEL-PESLVIVG-GGYIAAEFA 185 (452)
T ss_pred CCCCCC-CC-CEEEcHHHHHhhhhc-CCcEEEEC-CCHHHHHHH
Confidence 764432 12 235677777766542 23344444 678888887
No 98
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.73 E-value=6e-08 Score=101.40 Aligned_cols=104 Identities=12% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
+++|+|||||+.|+++|..|++.|.+||||++.+++. + . .+.++...+.+. +.+ . +.++. ..+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il--~--------~-~d~~~~~~~~~~---l~~-~-v~i~~~~~v 237 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI--P--------A-ADKDIVKVFTKR---IKK-Q-FNIMLETKV 237 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC--C--------c-CCHHHHHHHHHH---Hhh-c-eEEEcCCEE
Confidence 5799999999999999999999999999999988654 1 1 111222222222 333 2 55544 467
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
..++...+.+.+...+.+ ++..++++|.||+|+|.+|+...
T Consensus 238 ~~i~~~~~~~~v~~~~~~-----~~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 238 TAVEAKEDGIYVTMEGKK-----APAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred EEEEEcCCEEEEEEEeCC-----CcceEEEeCEEEEeecccccCCc
Confidence 777655555544321110 11246899999999999998763
No 99
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.73 E-value=2.3e-08 Score=97.66 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=68.1
Q ss_pred CCcEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS 186 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 186 (441)
.++|.|||+||||+.+|..|.+ .+..|+|+|+.+-.. +..-++++...++-+.+...+.+ ..+.+...|..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF-GLvRyGVAPDHpEvKnvintFt~----~aE~~rfsf~gNv 94 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF-GLVRYGVAPDHPEVKNVINTFTK----TAEHERFSFFGNV 94 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc-ceeeeccCCCCcchhhHHHHHHH----HhhccceEEEecc
Confidence 4499999999999999988876 468999999998543 22223333222222222222222 3444555665542
Q ss_pred EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561 187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK 238 (441)
Q Consensus 187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~ 238 (441)
-++ +.+.+.. .+-.||+||||.|+. ++.++|||.+
T Consensus 95 ~vG-----~dvsl~e------------L~~~ydavvLaYGa~~dR~L~IPGe~ 130 (468)
T KOG1800|consen 95 KVG-----RDVSLKE------------LTDNYDAVVLAYGADGDRRLDIPGEE 130 (468)
T ss_pred eec-----ccccHHH------------HhhcccEEEEEecCCCCcccCCCCcc
Confidence 222 2233332 245799999999986 8999999975
No 100
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.72 E-value=4.6e-08 Score=100.44 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=73.4
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc----c--------c----c---hhhhhcCCCCc---cc--
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF----T--------P----L---LASTCVGTLEF---RS-- 162 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~----~--------~----l---l~~~~~g~~~~---~~-- 162 (441)
++.++|+|||+|+|||.+|+.|.+.|++|+|+|+.+.++. . . + ++..+.+..++ +.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 3478999999999999999999999999999999987641 1 1 0 11111111111 00
Q ss_pred -c---ccchhhhhhhhcCCC----CEEEEEEEEEEEeCCC-CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC--cCC
Q 013561 163 -V---AEPVSRIQTSLSSDP----NSYFYLASCIGIDTDK-HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE--PLT 231 (441)
Q Consensus 163 -~---~~~~~~~~~~~~~~~----~v~~~~~~v~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~--p~~ 231 (441)
. ...+-+.++.+++.. .+.| ..+|..++... +...+...+.. +...+.-||.|+||||-. |+.
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~-----~~~~~~ifd~VvVctGh~~~P~~ 157 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNG-----TQIEEEIFDAVVVCTGHYVEPRI 157 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCC-----cceeEEEeeEEEEcccCcCCCCC
Confidence 0 001111222233322 2333 33566676665 34444432211 012466799999999964 888
Q ss_pred CCCCCc
Q 013561 232 FGIKGV 237 (441)
Q Consensus 232 ~~ipG~ 237 (441)
|.+||.
T Consensus 158 P~~~g~ 163 (448)
T KOG1399|consen 158 PQIPGP 163 (448)
T ss_pred CcCCCC
Confidence 888883
No 101
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.72 E-value=1.4e-08 Score=93.40 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=57.0
Q ss_pred EEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcccccc-------h--hhh---hcCCCCccc----------------c
Q 013561 113 VVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVFTPL-------L--AST---CVGTLEFRS----------------V 163 (441)
Q Consensus 113 vIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~~~l-------l--~~~---~~g~~~~~~----------------~ 163 (441)
+||||||+||++|..|.+.|.+ |+|||+++.++-... + +.. ..+..+... -
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 999999876531100 0 000 000000000 0
Q ss_pred ccchhhhhhhhcCCCCEEE-EEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC--CcCCCCCCC
Q 013561 164 AEPVSRIQTSLSSDPNSYF-YLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA--EPLTFGIKG 236 (441)
Q Consensus 164 ~~~~~~~~~~~~~~~~v~~-~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs--~p~~~~ipG 236 (441)
...+.+..+.+.+..+..+ ...+|++++..++...+...+. .++.+|+||+|||. .|+.|.+||
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~---------~~~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG---------RTIRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS----------EEEEEEEEE---SSCSB---S-TT
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec---------ceeeeeeEEEeeeccCCCCcccccc
Confidence 0001111111222223333 2457888887766566555321 37889999999995 789999999
No 102
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.70 E-value=1e-07 Score=99.71 Aligned_cols=159 Identities=21% Similarity=0.349 Sum_probs=109.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||++|+++|..|++.|.+||++++.+++. + . .+.++...+.+. +. ..++.++.+ .+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il--~--------~-~~~~~~~~l~~~---l~-~~gI~i~~~~~v 244 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL--P--------T-EDAELSKEVARL---LK-KLGVRVVTGAKV 244 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC--C--------c-CCHHHHHHHHHH---HH-hcCCEEEeCcEE
Confidence 5799999999999999999999999999999988653 1 1 111222222222 33 346777655 68
Q ss_pred EEEeC--CCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561 188 IGIDT--DKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSE 265 (441)
Q Consensus 188 ~~id~--~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~ 265 (441)
.+++. +++...+...+ +++.++++|.||+|+|.+|+...+. .+ .. .+
T Consensus 245 ~~i~~~~~~~~~~~~~~~-------g~~~~i~~D~vi~a~G~~p~~~~l~-l~-~~------------------~~---- 293 (472)
T PRK05976 245 LGLTLKKDGGVLIVAEHN-------GEEKTLEADKVLVSVGRRPNTEGIG-LE-NT------------------DI---- 293 (472)
T ss_pred EEEEEecCCCEEEEEEeC-------CceEEEEeCEEEEeeCCccCCCCCC-ch-hc------------------Cc----
Confidence 88864 33332222111 1224689999999999998764321 10 00 00
Q ss_pred CCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
+. .. |.|.||+++|| +.|+|||+|||+ + .+++++.|++||+.+|.||.
T Consensus 294 -------~~-------------~~-g~i~Vd~~l~t-s~~~IyAiGD~~------~---~~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 294 -------DV-------------EG-GFIQIDDFCQT-KERHIYAIGDVI------G---EPQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred -------ee-------------cC-CEEEECCCccc-CCCCEEEeeecC------C---CcccHHHHHHHHHHHHHHHc
Confidence 00 00 77999999999 899999999998 2 36789999999999999986
No 103
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.68 E-value=2.7e-06 Score=85.78 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=39.0
Q ss_pred CCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 101 LEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 101 ~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
+++.+....++++|||||+||++||..|+..|++|+|+|+++.++
T Consensus 116 le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 116 LEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred hhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 333344556899999999999999999999999999999999886
No 104
>PRK06370 mercuric reductase; Validated
Probab=98.66 E-value=1.5e-07 Score=98.11 Aligned_cols=161 Identities=22% Similarity=0.317 Sum_probs=112.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||+.|+++|..|++.|.+|+++++.+++. + . ...++...+.+. +. ..++.++.+ .+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l--~--------~-~~~~~~~~l~~~---l~-~~GV~i~~~~~V 235 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL--P--------R-EDEDVAAAVREI---LE-REGIDVRLNAEC 235 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC--c--------c-cCHHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 5799999999999999999999999999999988654 1 1 111122222222 22 357777654 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
.+++.+++.+.+..... ++..++++|.||+|+|.+|+...+ +.+.
T Consensus 236 ~~i~~~~~~~~v~~~~~------~~~~~i~~D~Vi~A~G~~pn~~~l-~l~~---------------------------- 280 (463)
T PRK06370 236 IRVERDGDGIAVGLDCN------GGAPEITGSHILVAVGRVPNTDDL-GLEA---------------------------- 280 (463)
T ss_pred EEEEEcCCEEEEEEEeC------CCceEEEeCEEEECcCCCcCCCCc-Cchh----------------------------
Confidence 88876554433322100 012478999999999999886432 1100
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.++++. .. |+|.||++||| +.|+|||+|||+. .+.+++.|..||+++|+||.
T Consensus 281 --~g~~~~------------~~-G~i~vd~~l~t-~~~~IyAiGD~~~---------~~~~~~~A~~~g~~aa~ni~ 332 (463)
T PRK06370 281 --AGVETD------------AR-GYIKVDDQLRT-TNPGIYAAGDCNG---------RGAFTHTAYNDARIVAANLL 332 (463)
T ss_pred --hCceEC------------CC-CcEeECcCCcC-CCCCEEEeeecCC---------CcccHHHHHHHHHHHHHHHh
Confidence 001111 11 78999999999 9999999999982 35789999999999999997
No 105
>PRK07846 mycothione reductase; Reviewed
Probab=98.66 E-value=1.6e-07 Score=97.63 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=70.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
+++|+|||||+.|+++|..|++.|.+||++++.+++. + ..+ .++...+.+. + + .++.++. .++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll--~--------~~d-~~~~~~l~~l---~-~-~~v~i~~~~~v 229 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL--R--------HLD-DDISERFTEL---A-S-KRWDVRLGRNV 229 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--c--------ccC-HHHHHHHHHH---H-h-cCeEEEeCCEE
Confidence 5799999999999999999999999999999988654 1 111 1222222222 2 2 3466654 478
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI 234 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i 234 (441)
.+++.+.+.+.+...+ ..++++|.|++|+|.+|+...+
T Consensus 230 ~~i~~~~~~v~v~~~~---------g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 230 VGVSQDGSGVTLRLDD---------GSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred EEEEEcCCEEEEEECC---------CcEeecCEEEEEECCccCcccc
Confidence 8887665555444321 1378999999999999987643
No 106
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.65 E-value=1.7e-07 Score=97.74 Aligned_cols=161 Identities=22% Similarity=0.247 Sum_probs=113.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||+|++|+++|..|++.|.+|||+++.+++. + . .+.++...+.+. +. ..++.++.+ ++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~--------~-~d~~~~~~l~~~---l~-~~gV~i~~~~~V 230 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL--P--------R-EEPEISAAVEEA---LA-EEGIEVVTSAQV 230 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC--C--------c-cCHHHHHHHHHH---HH-HcCCEEEcCcEE
Confidence 4799999999999999999999999999999988654 1 1 111222223332 32 356777665 58
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
..++.+++.+.+..... ++..++++|.||+|+|.+|+..++ +.+..
T Consensus 231 ~~i~~~~~~~~v~~~~~------~~~~~i~~D~ViiA~G~~p~~~~l-~l~~~--------------------------- 276 (463)
T TIGR02053 231 KAVSVRGGGKIITVEKP------GGQGEVEADELLVATGRRPNTDGL-GLEKA--------------------------- 276 (463)
T ss_pred EEEEEcCCEEEEEEEeC------CCceEEEeCEEEEeECCCcCCCCC-Ccccc---------------------------
Confidence 88876544433332110 112478999999999999986533 22100
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
++++. .. |+|.||++||| +.|+|||+|||+. .+.++..|+.||+++|.||.
T Consensus 277 ---g~~~~------------~~-G~i~vd~~~~T-s~~~VyAiGD~~~---------~~~~~~~A~~~g~~aa~ni~ 327 (463)
T TIGR02053 277 ---GVKLD------------ER-GGILVDETLRT-SNPGIYAAGDVTG---------GLQLEYVAAKEGVVAAENAL 327 (463)
T ss_pred ---CCEEC------------CC-CcEeECCCccC-CCCCEEEeeecCC---------CcccHhHHHHHHHHHHHHhc
Confidence 01111 11 78999999999 9999999999992 36789999999999999997
No 107
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.64 E-value=2.3e-07 Score=96.95 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=70.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||+.|+++|..|++.|.+||+||+.+++. + ..+ .+....+.+. +. ..++.++.+ .+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il--~--------~~d-~~~~~~l~~~---l~-~~gV~i~~~~~V 238 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC--P--------GTD-TETAKTLQKA---LT-KQGMKFKLGSKV 238 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC--C--------CCC-HHHHHHHHHH---HH-hcCCEEEECcEE
Confidence 6799999999999999999999999999999988654 1 111 1122223322 33 346777655 78
Q ss_pred EEEeCCCCEEEE--EecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 188 IGIDTDKHEVYC--ETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 188 ~~id~~~~~v~~--~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
.+++.+.+.+.+ ....+ +++.++++|.|++|+|.+|+...
T Consensus 239 ~~i~~~~~~v~v~~~~~~~------g~~~~i~~D~vi~a~G~~pn~~~ 280 (466)
T PRK06115 239 TGATAGADGVSLTLEPAAG------GAAETLQADYVLVAIGRRPYTQG 280 (466)
T ss_pred EEEEEcCCeEEEEEEEcCC------CceeEEEeCEEEEccCCcccccc
Confidence 888765444433 22111 12247899999999999998753
No 108
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.62 E-value=2.1e-07 Score=97.03 Aligned_cols=158 Identities=21% Similarity=0.312 Sum_probs=112.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
+++|+|||||+.|+++|..|++.|.+||++++.+++. + ..+ .++...+.+. +. ..++.++. ..+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~--------~~d-~~~~~~l~~~---l~-~~gI~v~~~~~v 239 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL--S--------FLD-DEISDALSYH---LR-DSGVTIRHNEEV 239 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--C--------cCC-HHHHHHHHHH---HH-HcCCEEEECCEE
Confidence 6799999999999999999999999999999988654 1 111 1222223332 33 34677665 478
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
++++.+++.+.+...+ + .++++|.|++|+|.+|+...+. .+.
T Consensus 240 ~~i~~~~~~~~v~~~~-g--------~~i~~D~vi~a~G~~p~~~~l~-l~~---------------------------- 281 (461)
T PRK05249 240 EKVEGGDDGVIVHLKS-G--------KKIKADCLLYANGRTGNTDGLN-LEN---------------------------- 281 (461)
T ss_pred EEEEEeCCeEEEEECC-C--------CEEEeCEEEEeecCCccccCCC-chh----------------------------
Confidence 8887555555544311 1 3689999999999998865321 100
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.++++. .. |+|.||+++|| +.|+|||+|||+. .|+++..|++||+.+|.||.
T Consensus 282 --~g~~~~------------~~-G~i~vd~~~~t-~~~~IyAiGD~~~---------~~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 282 --AGLEAD------------SR-GQLKVNENYQT-AVPHIYAVGDVIG---------FPSLASASMDQGRIAAQHAV 333 (461)
T ss_pred --hCcEec------------CC-CcEeeCCCccc-CCCCEEEeeecCC---------CcccHhHHHHHHHHHHHHHc
Confidence 001111 11 78999999999 9999999999992 46789999999999999997
No 109
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.62 E-value=2e-07 Score=97.14 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=71.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||++|+++|..|++.|.+||++++.+++. +. .+ .++...+.+. +. ..+++++.+ .+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--~~--------~~-~~~~~~~~~~---l~-~~gi~i~~~~~v 234 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL--PG--------ED-AEVSKVVAKA---LK-KKGVKILTNTKV 234 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC--CC--------CC-HHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence 5799999999999999999999999999999988654 11 11 1122222222 33 346777665 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
.+++.+++.+.+...+ +++.++++|.||+|+|..|+..
T Consensus 235 ~~i~~~~~~v~v~~~~-------g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 235 TAVEKNDDQVVYENKG-------GETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEeCCEEEEEEeC-------CcEEEEEeCEEEEecCCcccCC
Confidence 8887766666654321 1123689999999999999876
No 110
>PLN02697 lycopene epsilon cyclase
Probab=98.61 E-value=1.3e-06 Score=92.04 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+||||||||+++|..|++.|++|+|||+..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 5699999999999999999999999999999853
No 111
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.61 E-value=2.5e-07 Score=96.67 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=70.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||+|+.|+++|..|++.|.+||+|++.+++.- . ...++...+.+. +. ..++.++.+ .+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~----------~-~d~~~~~~l~~~---L~-~~gV~i~~~~~v 241 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP----------G-EDADAAEVLEEV---FA-RRGMTVLKRSRA 241 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC----------C-CCHHHHHHHHHH---HH-HCCcEEEcCCEE
Confidence 56899999999999999999999999999999876541 1 111122223222 33 347777654 68
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
.+++.+.+.+.+...+ + .++++|.|++|+|.+|+...
T Consensus 242 ~~v~~~~~~~~v~~~~-g--------~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 242 ESVERTGDGVVVTLTD-G--------RTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEEEEeCCEEEEEECC-C--------cEEEecEEEEeecCCcCCCC
Confidence 8886555555544321 1 37899999999999998764
No 112
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.60 E-value=2.9e-07 Score=95.40 Aligned_cols=157 Identities=20% Similarity=0.310 Sum_probs=112.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||+|+.|+++|..|++.|.+|||+++.+.+. + . ...++...+.+. +. ..++.++.+ .+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~--------~-~~~~~~~~l~~~---l~-~~gV~v~~~~~v 222 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL--P--------R-EDRDIADNIATI---LR-DQGVDIILNAHV 222 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--C--------C-cCHHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 5699999999999999999999999999999987554 1 1 111122222222 33 357777654 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
.+++.+++.+.+.... .++++|.|++|+|.+|+...+... .
T Consensus 223 ~~i~~~~~~v~v~~~~----------g~i~~D~vl~a~G~~pn~~~l~~~----------------------~------- 263 (441)
T PRK08010 223 ERISHHENQVQVHSEH----------AQLAVDALLIASGRQPATASLHPE----------------------N------- 263 (441)
T ss_pred EEEEEcCCEEEEEEcC----------CeEEeCEEEEeecCCcCCCCcCch----------------------h-------
Confidence 8887665555554311 258899999999999986432110 0
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.++++. .. |+|.||+++|| ++|||||+|||+ + .+++++.|..||+.+++||.
T Consensus 264 --~gl~~~------------~~-G~i~vd~~~~T-s~~~IyA~GD~~------~---~~~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 264 --AGIAVN------------ER-GAIVVDKYLHT-TADNIWAMGDVT------G---GLQFTYISLDDYRIVRDELL 315 (441)
T ss_pred --cCcEEC------------CC-CcEEECCCccc-CCCCEEEeeecC------C---CccchhHHHHHHHHHHHHHc
Confidence 011111 11 78999999999 999999999999 2 35799999999999999986
No 113
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=2e-07 Score=97.16 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||++|+++|..|++.|.+||++++.+++. +. ...++...+.+. +. ..++.++.+ .+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~~---------~~~~~~~~l~~~---l~-~~gV~i~~~~~V 236 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL--PG---------EDKEISKLAERA---LK-KRGIKIKTGAKA 236 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC--Cc---------CCHHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence 5799999999999999999999999999999988654 11 111222223322 33 346777665 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
.+|+.+.+.+.+...++ +++.++++|.||+|+|.+|+...
T Consensus 237 ~~i~~~~~~v~v~~~~g------g~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 237 KKVEQTDDGVTVTLEDG------GKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEEEEeCCEEEEEEEeC------CeeEEEEeCEEEEeeCCccCCCC
Confidence 88887655555443211 12246899999999999998764
No 114
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.57 E-value=3.6e-07 Score=94.91 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=111.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||+|++|+++|..|++.|.+|+++++.+.+.. ..+ .++...+.+. +. ..++.++.+ .+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~----------~~d-~~~~~~l~~~---l~-~~gV~i~~~~~v 230 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR----------GFD-DDMRALLARN---ME-GRGIRIHPQTSL 230 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc----------ccC-HHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence 57999999999999999999999999999999876531 111 1222222222 33 346777655 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
.+++...+.+.+...+ ..++++|.||+|+|..|+...+ +.+
T Consensus 231 ~~i~~~~~~~~v~~~~---------g~~i~~D~viva~G~~pn~~~l-~l~----------------------------- 271 (446)
T TIGR01424 231 TSITKTDDGLKVTLSH---------GEEIVADVVLFATGRSPNTKGL-GLE----------------------------- 271 (446)
T ss_pred EEEEEcCCeEEEEEcC---------CcEeecCEEEEeeCCCcCCCcC-Ccc-----------------------------
Confidence 8887544444443311 1368999999999998876432 110
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
..++++.. + |+|.||+++|| ++|+|||+|||+ + .++++..|++||+++|+||.
T Consensus 272 -~~g~~~~~------------~-G~i~vd~~~~T-s~~~IyA~GD~~------~---~~~l~~~A~~~g~~~a~~i~ 324 (446)
T TIGR01424 272 -AAGVELND------------A-GAIAVDEYSRT-SIPSIYAVGDVT------D---RINLTPVAIMEATCFANTEF 324 (446)
T ss_pred -ccCeEECC------------C-CcEEeCCCCcc-CCCCEEEeeccC------C---CccchhHHHHHHHHHHHHHh
Confidence 00112211 1 78999999999 999999999999 2 35799999999999999997
No 115
>PRK06116 glutathione reductase; Validated
Probab=98.57 E-value=3.3e-07 Score=95.27 Aligned_cols=158 Identities=21% Similarity=0.227 Sum_probs=111.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||+|++|+++|..|++.|.+||++++.+.+. + . ...++...+.+. +. ..++.++.+ .+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~--------~-~~~~~~~~l~~~---L~-~~GV~i~~~~~V 231 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL--R--------G-FDPDIRETLVEE---ME-KKGIRLHTNAVP 231 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc--c--------c-cCHHHHHHHHHH---HH-HCCcEEECCCEE
Confidence 5799999999999999999999999999999987543 1 0 111222222222 22 356777654 78
Q ss_pred EEEeCCCCE-EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccC
Q 013561 188 IGIDTDKHE-VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSEN 266 (441)
Q Consensus 188 ~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~ 266 (441)
.+++.+++. +.+...+ + .++++|.||+|+|.+|+...+.-. .
T Consensus 232 ~~i~~~~~g~~~v~~~~-g--------~~i~~D~Vv~a~G~~p~~~~l~l~----------------------~------ 274 (450)
T PRK06116 232 KAVEKNADGSLTLTLED-G--------ETLTVDCLIWAIGREPNTDGLGLE----------------------N------ 274 (450)
T ss_pred EEEEEcCCceEEEEEcC-C--------cEEEeCEEEEeeCCCcCCCCCCch----------------------h------
Confidence 888754332 4443321 1 368999999999999876532110 0
Q ss_pred CCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 267 PGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 267 ~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.++++. .. |+|.||+++|| ++|+|||+|||+ + .++++..|++||+.+|+||.
T Consensus 275 ---~g~~~~------------~~-G~i~vd~~~~T-s~~~IyA~GD~~------~---~~~~~~~A~~~g~~aa~~i~ 326 (450)
T PRK06116 275 ---AGVKLN------------EK-GYIIVDEYQNT-NVPGIYAVGDVT------G---RVELTPVAIAAGRRLSERLF 326 (450)
T ss_pred ---cCceEC------------CC-CcEecCCCCCc-CCCCEEEEeecC------C---CcCcHHHHHHHHHHHHHHHh
Confidence 011111 11 78999999999 999999999998 2 35789999999999999997
No 116
>PLN02507 glutathione reductase
Probab=98.55 E-value=3.7e-07 Score=96.05 Aligned_cols=101 Identities=17% Similarity=0.105 Sum_probs=70.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||++|+++|..|++.|.+|||+++.++.. + ..+ .++...+.+. +. ..++.++.+ .+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l--~--------~~d-~~~~~~l~~~---l~-~~GI~i~~~~~V 267 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL--R--------GFD-DEMRAVVARN---LE-GRGINLHPRTNL 267 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC--c--------ccC-HHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 5799999999999999999999999999999887543 0 111 1222223322 33 346777655 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
.+++.+.+.+.+...+ ..++++|.|++|+|.+|+...
T Consensus 268 ~~i~~~~~~~~v~~~~---------g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 268 TQLTKTEGGIKVITDH---------GEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEEEEeCCeEEEEECC---------CcEEEcCEEEEeecCCCCCCC
Confidence 8887554555544321 136899999999999998764
No 117
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.54 E-value=4e-07 Score=94.65 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=68.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||+.|+++|..|++.|.+||++++.+++. + . .+.++...+.+. +. ..++.++.+ .+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il--~--------~-~d~~~~~~~~~~---l~-~~gI~i~~~~~v 230 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL--R--------S-FDSMISETITEE---YE-KEGINVHKLSKP 230 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--c--------c-cCHHHHHHHHHH---HH-HcCCEEEcCCEE
Confidence 5799999999999999999999999999999988654 1 1 111222223322 32 346777654 67
Q ss_pred EEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 188 IGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 188 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
.+++.+.. .+.+...+ + +..+++|.|++|+|.+|+...
T Consensus 231 ~~i~~~~~~~~~v~~~~-------g-~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 231 VKVEKTVEGKLVIHFED-------G-KSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred EEEEEeCCceEEEEECC-------C-cEEEEcCEEEEeeCCCcCccc
Confidence 77765322 23332211 1 136899999999999998753
No 118
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.52 E-value=1.7e-07 Score=73.29 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=50.9
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EEEE
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SCIG 189 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~ 189 (441)
||+|||||+.|+++|..|++.|.+||||++++.+. +. .+.++...+.+. +. ..++.++.+ .+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~---------~~~~~~~~~~~~---l~-~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PG---------FDPDAAKILEEY---LR-KRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TT---------SSHHHHHHHHHH---HH-HTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hh---------cCHHHHHHHHHH---HH-HCCCEEEeCCEEEE
Confidence 69999999999999999999999999999999765 11 111222233333 33 347887765 6888
Q ss_pred EeCCCCE
Q 013561 190 IDTDKHE 196 (441)
Q Consensus 190 id~~~~~ 196 (441)
++.+.+.
T Consensus 66 i~~~~~~ 72 (80)
T PF00070_consen 66 IEKDGDG 72 (80)
T ss_dssp EEEETTS
T ss_pred EEEeCCE
Confidence 8776654
No 119
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.51 E-value=6.2e-07 Score=93.99 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=66.2
Q ss_pred CCcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA 185 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (441)
+++|+|||||+.|+++|..++. .|.+|||+++.+++. + . .+.++...+.+. +. ..++.++.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il--~--------~-~d~~~~~~l~~~---L~-~~GI~i~~~ 251 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL--R--------G-FDSTLRKELTKQ---LR-ANGINIMTN 251 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc--c--------c-cCHHHHHHHHHH---HH-HcCCEEEcC
Confidence 5799999999999999976654 489999999988654 1 1 112233333333 33 346776654
Q ss_pred -EEEEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 186 -SCIGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 186 -~v~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
.+.+++.+.+ .+.+...+ + .++++|.|++|+|.+|+...
T Consensus 252 ~~v~~i~~~~~~~~~v~~~~-g--------~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 252 ENPAKVTLNADGSKHVTFES-G--------KTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred CEEEEEEEcCCceEEEEEcC-C--------CEEEcCEEEEeeCCCcCccc
Confidence 6777865322 22222211 1 26899999999999998753
No 120
>PRK14694 putative mercuric reductase; Provisional
Probab=98.48 E-value=1.1e-06 Score=91.93 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||+|++|+++|..|++.|.+||++++.. .. + ..+ .++...+.+. +. ..++.++.+ .+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~-~l--~--------~~~-~~~~~~l~~~---l~-~~GI~v~~~~~v 241 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSR-VL--S--------QED-PAVGEAIEAA---FR-REGIEVLKQTQA 241 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC-CC--C--------CCC-HHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 5799999999999999999999999999998642 22 0 111 1222223332 33 357777765 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
..++.+++.+.+.... .++++|.||+|+|..|+...
T Consensus 242 ~~i~~~~~~~~v~~~~----------~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 242 SEVDYNGREFILETNA----------GTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred EEEEEcCCEEEEEECC----------CEEEeCEEEEccCCCCCcCC
Confidence 8888766655554311 26899999999999998753
No 121
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.45 E-value=2.4e-06 Score=82.12 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
..+|+||||||||+.||..|++.|++|+|+|+++.+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~G 61 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG 61 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 3589999999999999999999999999999987653
No 122
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.44 E-value=1e-06 Score=89.51 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=68.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
.++|+|||||+.|+++|..|.+.|.+|+++++.+++.-. .. +......+.+. +. ..++.++. ..+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------~~-~~~~~~~l~~~---l~-~~gV~i~~~~~v 206 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------LM-PPEVSSRLQHR---LT-EMGVHLLLKSQL 206 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------hC-CHHHHHHHHHH---HH-hCCCEEEECCeE
Confidence 578999999999999999999999999999998865410 01 11122222222 32 34677765 478
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT 231 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~ 231 (441)
.+++.+.+.+.+...+ ..++++|.||+|+|..|+.
T Consensus 207 ~~i~~~~~~~~v~~~~---------g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 207 QGLEKTDSGIRATLDS---------GRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EEEEccCCEEEEEEcC---------CcEEECCEEEECcCCCcch
Confidence 8888765554443321 1378999999999998865
No 123
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.44 E-value=8.5e-07 Score=90.66 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=67.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||+|++|+++|..|++.|.+|||+++.+++.- ..........+.+. +. ..++.++.+ .+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~----------~~~~~~~~~~l~~~---l~-~~GV~i~~~~~V 209 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG----------RNAPPPVQRYLLQR---HQ-QAGVRILLNNAI 209 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh----------hhcCHHHHHHHHHH---HH-HCCCEEEeCCee
Confidence 57899999999999999999999999999999886541 00111111112222 22 346777654 77
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
++++. .+.+.+...+ + .++++|.||+|+|.+|+..
T Consensus 210 ~~i~~-~~~~~v~l~~-g--------~~i~aD~Vv~a~G~~pn~~ 244 (396)
T PRK09754 210 EHVVD-GEKVELTLQS-G--------ETLQADVVIYGIGISANDQ 244 (396)
T ss_pred EEEEc-CCEEEEEECC-C--------CEEECCEEEECCCCChhhH
Confidence 88865 3333333211 1 3689999999999998753
No 124
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.43 E-value=1.2e-06 Score=91.80 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=108.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++++|||||+.|+++|..|++.|.+|||+++. .+. + . .+.++...+.+. +. ..++.++.+ .+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--~--------~-~d~~~~~~l~~~---L~-~~gV~i~~~~~v 243 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL--R--------G-FDQDCANKVGEH---ME-EHGVKFKRQFVP 243 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc--c--------c-cCHHHHHHHHHH---HH-HcCCEEEeCceE
Confidence 568999999999999999999999999999873 222 1 1 111222223332 33 346777655 56
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
..++..++.+.+...+.. +..++++|.|++|+|..|+...+.-.
T Consensus 244 ~~v~~~~~~~~v~~~~~~------~~~~i~~D~vl~a~G~~pn~~~l~l~------------------------------ 287 (484)
T TIGR01438 244 IKVEQIEAKVKVTFTDST------NGIEEEYDTVLLAIGRDACTRKLNLE------------------------------ 287 (484)
T ss_pred EEEEEcCCeEEEEEecCC------cceEEEeCEEEEEecCCcCCCcCCcc------------------------------
Confidence 666544444333221110 01368999999999999876532100
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
..++++. ..-|+|.||+++|| +.|+|||+|||+. ..+.+++.|++||+.+|+||.
T Consensus 288 -~~gv~~~------------~~~G~I~Vd~~~~T-s~p~IyA~GDv~~--------~~~~l~~~A~~~g~~aa~~i~ 342 (484)
T TIGR01438 288 -NVGVKIN------------KKTGKIPADEEEQT-NVPYIYAVGDILE--------DKQELTPVAIQAGRLLAQRLF 342 (484)
T ss_pred -cccceec------------CcCCeEecCCCccc-CCCCEEEEEEecC--------CCccchHHHHHHHHHHHHHHh
Confidence 0011111 00177999999999 9999999999993 135789999999999999997
No 125
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.43 E-value=6.8e-07 Score=92.61 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=68.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
+++|+|||||++|+++|..|++.|.+||++++.+++. + . .+.++...+.+. +. ..++.++. ..+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--~--------~-~d~~~~~~l~~~---l~-~~gI~i~~~~~v 212 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--K--------L-MDADMNQPILDE---LD-KREIPYRLNEEI 212 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--h--------h-cCHHHHHHHHHH---HH-hcCCEEEECCeE
Confidence 5799999999999999999999999999999988643 1 1 111222223332 33 34677765 478
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
.+++. ..+.+.++ .++++|.|++|+|.+|+..
T Consensus 213 ~~i~~--~~v~~~~g-----------~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 213 DAING--NEVTFKSG-----------KVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred EEEeC--CEEEECCC-----------CEEEeCEEEECcCCCcChH
Confidence 88863 34554431 2689999999999999865
No 126
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.42 E-value=1.2e-05 Score=77.04 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
..+|+||||||+|+.+|..|++.|++|+|+|+++.++
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG 57 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 4589999999999999999999999999999998653
No 127
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.42 E-value=1.3e-06 Score=91.92 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=104.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||+.|+++|..|++.|.+|||+++. ... + .. +.++...+.+. +. ..++.++.+ .+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--~--------~~-d~~~~~~l~~~---l~-~~GV~i~~~~~v 245 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL--R--------GF-DRQCSEKVVEY---MK-EQGTLFLEGVVP 245 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc--c--------cC-CHHHHHHHHHH---HH-HcCCEEEcCCeE
Confidence 568999999999999999999999999999864 221 1 11 11222223332 33 346777665 56
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
..++.....+.+...+ + .++++|.|++|+|.+|+...++-..
T Consensus 246 ~~v~~~~~~~~v~~~~-g--------~~i~~D~vl~a~G~~pn~~~l~l~~----------------------------- 287 (499)
T PTZ00052 246 INIEKMDDKIKVLFSD-G--------TTELFDTVLYATGRKPDIKGLNLNA----------------------------- 287 (499)
T ss_pred EEEEEcCCeEEEEECC-C--------CEEEcCEEEEeeCCCCCccccCchh-----------------------------
Confidence 6665443434333211 1 2679999999999999865332110
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.++++. .. |.+.+++. || +.|+|||+|||+. + .|.++..|++||+.+|+||.
T Consensus 288 --~g~~~~------------~~-G~ii~~~~-~T-s~p~IyAiGDv~~-----~---~~~l~~~A~~~g~~aa~ni~ 339 (499)
T PTZ00052 288 --IGVHVN------------KS-NKIIAPND-CT-NIPNIFAVGDVVE-----G---RPELTPVAIKAGILLARRLF 339 (499)
T ss_pred --cCcEEC------------CC-CCEeeCCC-cC-CCCCEEEEEEecC-----C---CcccHHHHHHHHHHHHHHHh
Confidence 001111 11 66666666 88 9999999999982 1 36789999999999999997
No 128
>PTZ00058 glutathione reductase; Provisional
Probab=98.42 E-value=1.1e-06 Score=93.45 Aligned_cols=102 Identities=12% Similarity=0.142 Sum_probs=69.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||+.|+++|..|++.|.+||++++.+++. + . .+.++...+.+. +. ..++.++.+ .+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--~--------~-~d~~i~~~l~~~---L~-~~GV~i~~~~~V 301 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--R--------K-FDETIINELEND---MK-KNNINIITHANV 301 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--c--------c-CCHHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence 5799999999999999999999999999999988654 1 1 112222223332 33 346776654 67
Q ss_pred EEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 188 IGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 188 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
.+++.+.. .+.+...+ +..++++|.|++|+|.+|+...
T Consensus 302 ~~I~~~~~~~v~v~~~~--------~~~~i~aD~VlvA~Gr~Pn~~~ 340 (561)
T PTZ00058 302 EEIEKVKEKNLTIYLSD--------GRKYEHFDYVIYCVGRSPNTED 340 (561)
T ss_pred EEEEecCCCcEEEEECC--------CCEEEECCEEEECcCCCCCccc
Confidence 77875432 33332211 1136899999999999998653
No 129
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.41 E-value=5e-07 Score=90.87 Aligned_cols=109 Identities=18% Similarity=0.247 Sum_probs=63.7
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEE-cCCCCcccccc------------hhhh--hcC----------C--------
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCI-SPRNHMVFTPL------------LAST--CVG----------T-------- 157 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvi-e~~~~~~~~~l------------l~~~--~~g----------~-------- 157 (441)
+|+|||||+||++||..+++.|++|.|+ ...+.+...++ ..++ ..| .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 5999999999999999999999999999 33333322111 0000 000 0
Q ss_pred --CCccccccch-----hh-hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561 158 --LEFRSVAEPV-----SR-IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227 (441)
Q Consensus 158 --~~~~~~~~~~-----~~-~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs 227 (441)
+..+.....+ .+ +.+.+...+++.+++++|++|..+++.|.--....+ ..+.+|.+|+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--------~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--------EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS--------EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC--------CEEecCEEEEeccc
Confidence 0000000001 11 112345568899999999999887777654332222 47899999999998
No 130
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.41 E-value=1.2e-05 Score=85.16 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+|+|||||+||+++|..+++.|.+|+|+|++.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 69999999999999999999999999999874
No 131
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.40 E-value=1.1e-06 Score=90.81 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=68.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
+++|+|||||++|+++|..|++.|.+||++++.+++.. + ..+ ..+...+.+. +. ..+++++. ..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-~--------~~~-~~~~~~~~~~---l~-~~gV~v~~~~~v 202 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-K--------LFD-EEMNQIVEEE---LK-KHEINLRLNEEV 202 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-c--------ccC-HHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence 57999999999999999999999999999999875521 1 011 1122222222 22 34677764 478
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
.+++.+...+.+.++ .++++|.||+|+|.+|+..
T Consensus 203 ~~i~~~~~~v~~~~g-----------~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 203 DSIEGEERVKVFTSG-----------GVYQADMVILATGIKPNSE 236 (427)
T ss_pred EEEecCCCEEEEcCC-----------CEEEeCEEEECCCccCCHH
Confidence 888876553233321 3789999999999998754
No 132
>PRK06847 hypothetical protein; Provisional
Probab=98.40 E-value=1.8e-06 Score=87.29 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+++|+|||||++|+++|..|++.|++|+|+|+++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999999864
No 133
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.40 E-value=8.4e-07 Score=86.08 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=32.0
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+|+|||||++|+++|..|++.|.+|+|||+.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 6999999999999999999999999999998754
No 134
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.40 E-value=1.2e-06 Score=91.18 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=69.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
+++|+|||+|+.|+++|..|++.|.+|+++++.+++. + . .+.++...+.+. +.+ . +.++. ..+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~--------~-~d~~~~~~~~~~---l~~-~-I~i~~~~~v 232 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL--P--------L-EDPEVSKQAQKI---LSK-E-FKIKLGAKV 232 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--c--------c-hhHHHHHHHHHH---Hhh-c-cEEEcCCEE
Confidence 6799999999999999999999999999999988654 1 1 111122222222 333 3 66654 478
Q ss_pred EEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 188 IGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 188 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
.+++.+.+ .+.+...+ +++.++++|.|++|+|.+|+...
T Consensus 233 ~~i~~~~~~~v~~~~~~-------~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 233 TSVEKSGDEKVEELEKG-------GKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EEEEEcCCceEEEEEcC-------CceEEEEeCEEEEccCCccCCCC
Confidence 88875543 44443211 12246899999999999998763
No 135
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.36 E-value=9.9e-06 Score=82.21 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=66.5
Q ss_pred cEEEECCCHHHHHHHHhh--ccCCCeEEEEcCCCCccccc----c--------hhhhhcCCC--------Cccc--cccc
Q 013561 111 RVVVLGTGWGACRFLKGI--DTKIYDAVCISPRNHMVFTP----L--------LASTCVGTL--------EFRS--VAEP 166 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L--~~~g~~Vtvie~~~~~~~~~----l--------l~~~~~g~~--------~~~~--~~~~ 166 (441)
+|+|||||+||+++|..| ++.|.+|+|||+++...+.. + +........ .... ...+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 489999999999999999 78899999999876552110 0 001110000 0000 0000
Q ss_pred ---hh--hh----hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561 167 ---VS--RI----QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL 230 (441)
Q Consensus 167 ---~~--~~----~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~ 230 (441)
++ ++ .+... ..++.++.+.|.+|+.....+.+...++ .++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g---------~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADG---------RTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCC---------CEEEeeEEEECCCcccc
Confidence 10 11 11122 3567788889999998877444433211 37999999999995543
No 136
>PLN02661 Putative thiazole synthesis
Probab=98.35 E-value=2.9e-05 Score=77.20 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~~~ 144 (441)
..+|+|||||++|+.+|..|++. |++|+|||+....
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 45899999999999999999975 8999999998765
No 137
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.35 E-value=7.5e-07 Score=87.30 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=87.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccccc----c------h-----hhhh-------cCCCCccccccc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTP----L------L-----ASTC-------VGTLEFRSVAEP 166 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~----l------l-----~~~~-------~g~~~~~~~~~~ 166 (441)
..+|+|||+||+|..||...++.|.+.++||++..++-+- + | +... .|.. -..+...
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~-vs~~~~d 117 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGID-VSSVSLD 117 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcc-ccceecC
Confidence 4689999999999999999999999999999987664221 1 1 1111 0110 0011112
Q ss_pred hhhh--------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCC
Q 013561 167 VSRI--------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLT 231 (441)
Q Consensus 167 ~~~~--------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~ 231 (441)
+..+ .+.+.+...+.++.+.-.-++++ +|.+...+ ++...+.+.++||||||. +.+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~--~V~v~k~d-------g~~~ii~aKnIiiATGSeV~~~ 188 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN--KVSVKKID-------GEDQIIKAKNIIIATGSEVTPF 188 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc--eEEEeccC-------CCceEEeeeeEEEEeCCccCCC
Confidence 2111 11233446777777766666654 45544422 344688999999999995 444
Q ss_pred CCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEee
Q 013561 232 FGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS 275 (441)
Q Consensus 232 ~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a 275 (441)
|+|.=.++.+. +...|..+.+- .+.+.+.+ +|..|+|+.
T Consensus 189 PGI~IDekkIV---SStgALsL~~v-Pk~~~viG-~G~IGLE~g 227 (506)
T KOG1335|consen 189 PGITIDEKKIV---SSTGALSLKEV-PKKLTVIG-AGYIGLEMG 227 (506)
T ss_pred CCeEecCceEE---ecCCccchhhC-cceEEEEc-Cceeeeehh
Confidence 43221112222 22233333222 22344444 689999987
No 138
>PRK07236 hypothetical protein; Provisional
Probab=98.34 E-value=2e-06 Score=87.51 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=34.1
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+++.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4567999999999999999999999999999999874
No 139
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.33 E-value=1.5e-05 Score=81.14 Aligned_cols=32 Identities=9% Similarity=0.277 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+|+|||+|.|||++|..|.+. ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 799999999999999999988 99999998753
No 140
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.33 E-value=2.4e-06 Score=87.42 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT 147 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~ 147 (441)
..+|+|||+||||++||..|++.|++|.|+|+.+..++.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k 41 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK 41 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence 568999999999999999999999999999998877654
No 141
>PRK13748 putative mercuric reductase; Provisional
Probab=98.33 E-value=2.2e-06 Score=91.61 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=68.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||+.|+++|..|++.|.+|||+++.+ .. . . .+.++...+.+. +. ..++.++.+ .+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l-~---------~-~d~~~~~~l~~~---l~-~~gI~i~~~~~v 333 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST-LF-F---------R-EDPAIGEAVTAA---FR-AEGIEVLEHTQA 333 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cc-c---------c-cCHHHHHHHHHH---HH-HCCCEEEcCCEE
Confidence 5799999999999999999999999999999753 21 0 1 111222223332 32 346776644 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ 233 (441)
..++.++..+.+.... .++++|.|++|+|.+|+...
T Consensus 334 ~~i~~~~~~~~v~~~~----------~~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 334 SQVAHVDGEFVLTTGH----------GELRADKLLVATGRAPNTRS 369 (561)
T ss_pred EEEEecCCEEEEEecC----------CeEEeCEEEEccCCCcCCCC
Confidence 8887655555544321 26899999999999998753
No 142
>PRK14727 putative mercuric reductase; Provisional
Probab=98.32 E-value=2.4e-06 Score=89.57 Aligned_cols=156 Identities=16% Similarity=0.200 Sum_probs=109.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||+|+.|+++|..|++.|.+||++++.. ... ..+ .++...+.+. +. ..++.++.+ .+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l~----------~~d-~~~~~~l~~~---L~-~~GV~i~~~~~V 251 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LLF----------RED-PLLGETLTAC---FE-KEGIEVLNNTQA 251 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CCC----------cch-HHHHHHHHHH---HH-hCCCEEEcCcEE
Confidence 5799999999999999999999999999998743 220 111 1122222222 32 346777654 78
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~ 267 (441)
..++.+.+.+.+.... .++++|.||+|+|..|+...+.-..
T Consensus 252 ~~i~~~~~~~~v~~~~----------g~i~aD~VlvA~G~~pn~~~l~l~~----------------------------- 292 (479)
T PRK14727 252 SLVEHDDNGFVLTTGH----------GELRAEKLLISTGRHANTHDLNLEA----------------------------- 292 (479)
T ss_pred EEEEEeCCEEEEEEcC----------CeEEeCEEEEccCCCCCccCCCchh-----------------------------
Confidence 7887655555554321 2688999999999999875321100
Q ss_pred CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
.++++. .. |+|.||+++|| ++|+|||+|||+. .|.+++.|+.||+.+|.||.
T Consensus 293 --~g~~~~------------~~-G~i~Vd~~~~T-s~~~IyA~GD~~~---------~~~~~~~A~~~G~~aa~~i~ 344 (479)
T PRK14727 293 --VGVTTD------------TS-GAIVVNPAMET-SAPDIYAAGDCSD---------LPQFVYVAAAAGSRAGINMT 344 (479)
T ss_pred --hCceec------------CC-CCEEECCCeec-CCCCEEEeeecCC---------cchhhhHHHHHHHHHHHHHc
Confidence 001111 11 78999999999 9999999999992 36789999999999999997
No 143
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.28 E-value=3.4e-06 Score=87.48 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=67.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
+++|+|||||++|+++|..|++.|.+|+++++.+++.-. ..+ .++...+.+. +. ..+++++. ..+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------~~~-~~~~~~l~~~---l~-~~gI~v~~~~~v 214 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD---------SFD-KEITDVMEEE---LR-ENGVELHLNEFV 214 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch---------hcC-HHHHHHHHHH---HH-HCCCEEEcCCEE
Confidence 579999999999999999999999999999988754310 011 1122222222 22 34666654 478
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
.+++.+.+...+... + .++++|.||+|+|..|+..
T Consensus 215 ~~i~~~~~~~~v~~~--~--------~~i~~d~vi~a~G~~p~~~ 249 (444)
T PRK09564 215 KSLIGEDKVEGVVTD--K--------GEYEADVVIVATGVKPNTE 249 (444)
T ss_pred EEEecCCcEEEEEeC--C--------CEEEcCEEEECcCCCcCHH
Confidence 888765443333221 1 2689999999999988754
No 144
>PLN02546 glutathione reductase
Probab=98.28 E-value=4.2e-06 Score=89.01 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=108.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||+.|+++|..|+..|.+|+|+++.+.+. + ..+ .++...+.+. +. ..++.++.+ .+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il--~--------~~d-~~~~~~l~~~---L~-~~GV~i~~~~~v 316 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL--R--------GFD-EEVRDFVAEQ---MS-LRGIEFHTEESP 316 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc--c--------ccC-HHHHHHHHHH---HH-HCCcEEEeCCEE
Confidence 5799999999999999999999999999999887543 1 111 1122222222 33 357777654 67
Q ss_pred EEEeCC-CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccC
Q 013561 188 IGIDTD-KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSEN 266 (441)
Q Consensus 188 ~~id~~-~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~ 266 (441)
.+++.. .+.+.+...+ .....+|.||+|+|.+|+...+. .+ ..
T Consensus 317 ~~i~~~~~g~v~v~~~~---------g~~~~~D~Viva~G~~Pnt~~L~-le---------------------~~----- 360 (558)
T PLN02546 317 QAIIKSADGSLSLKTNK---------GTVEGFSHVMFATGRKPNTKNLG-LE---------------------EV----- 360 (558)
T ss_pred EEEEEcCCCEEEEEECC---------eEEEecCEEEEeeccccCCCcCC-hh---------------------hc-----
Confidence 777642 3334443311 12345899999999999764321 10 00
Q ss_pred CCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 267 PGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 267 ~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
++++ +.. |+|.||+++|| ++|+|||+|||+. .++++..|+.||+.+|+||.
T Consensus 361 ----gl~~------------d~~-G~I~VD~~l~T-s~p~IYAaGDv~~---------~~~l~~~A~~~g~~~a~~i~ 411 (558)
T PLN02546 361 ----GVKM------------DKN-GAIEVDEYSRT-SVPSIWAVGDVTD---------RINLTPVALMEGGALAKTLF 411 (558)
T ss_pred ----CCcC------------CCC-CcEeECCCcee-CCCCEEEeeccCC---------CcccHHHHHHHHHHHHHHHc
Confidence 0111 111 78999999999 9999999999992 35789999999999999997
No 145
>PRK10262 thioredoxin reductase; Provisional
Probab=98.26 E-value=8.3e-06 Score=80.85 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=111.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
+++|+|||+|+.|+++|..|++.+.+||++++.+.+... .... +.+.+.+ +..++.++. ..+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~-------------~~~~---~~~~~~l-~~~gV~i~~~~~v 208 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE-------------KILI---KRLMDKV-ENGNIILHTNRTL 208 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCC-------------HHHH---HHHHhhc-cCCCeEEEeCCEE
Confidence 679999999999999999999999999999998753210 0011 1111112 345677765 478
Q ss_pred EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561 188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS 264 (441)
Q Consensus 188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a 264 (441)
++++.+.. .+.+.+...+ ++..++++|.||+++|.+|+..-... .+...
T Consensus 209 ~~v~~~~~~~~~v~~~~~~~~-----~~~~~i~~D~vv~a~G~~p~~~l~~~-----------------------~l~~~ 260 (321)
T PRK10262 209 EEVTGDQMGVTGVRLRDTQNS-----DNIESLDVAGLFVAIGHSPNTAIFEG-----------------------QLELE 260 (321)
T ss_pred EEEEcCCccEEEEEEEEcCCC-----CeEEEEECCEEEEEeCCccChhHhhc-----------------------ccccc
Confidence 88876543 3445442111 12247899999999999987642210 00000
Q ss_pred cCCCCceeEeeCceEEEEccCCcccCCceeeCC-----CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHH
Q 013561 265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-----WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYL 339 (441)
Q Consensus 265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-----~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~a 339 (441)
. |+|.||+ ++|| ++|+|||+|||+.. ..+++..|+.+|..|
T Consensus 261 ------------------------~-g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~--------~~~~~~~A~~~g~~A 306 (321)
T PRK10262 261 ------------------------N-GYIKVQSGIHGNATQT-SIPGVFAAGDVMDH--------IYRQAITSAGTGCMA 306 (321)
T ss_pred ------------------------C-CEEEECCCCccccccc-CCCCEEECeeccCC--------CcceEEEEehhHHHH
Confidence 0 6688886 6888 99999999999932 235667799999999
Q ss_pred HHHHHHHhc
Q 013561 340 AELFNKKIG 348 (441)
Q Consensus 340 A~nI~~~l~ 348 (441)
|..|.++|.
T Consensus 307 a~~~~~~l~ 315 (321)
T PRK10262 307 ALDAERYLD 315 (321)
T ss_pred HHHHHHHHH
Confidence 999999996
No 146
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.26 E-value=4.1e-06 Score=88.79 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||+||++||..+++.|.+|+|||++.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 4689999999999999999999999999999983
No 147
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.26 E-value=5e-06 Score=84.54 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+|+|||||+||+++|..|++.|++|+|+|+++..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~ 34 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI 34 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 4899999999999999999999999999998654
No 148
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.25 E-value=5.4e-06 Score=85.68 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
..+|+||||||||+++|..|++.|++|+|+|+.+...
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g 41 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG 41 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 4689999999999999999999999999999987543
No 149
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.24 E-value=1e-05 Score=82.42 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 568999999999999999999999999999998754
No 150
>PRK10015 oxidoreductase; Provisional
Probab=98.24 E-value=6.3e-06 Score=85.16 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
..+|+||||||||++||..|++.|++|+|||+.+...
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 4689999999999999999999999999999987653
No 151
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.22 E-value=7.3e-06 Score=83.25 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 458999999999999999999999999999998754
No 152
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.19 E-value=1.5e-05 Score=81.05 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 45899999999999999999999999999999864
No 153
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.19 E-value=6.7e-06 Score=84.35 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 468999999999999999999999999999998653
No 154
>PRK05868 hypothetical protein; Validated
Probab=98.18 E-value=1.3e-05 Score=81.33 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 358999999999999999999999999999998654
No 155
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.17 E-value=8.2e-06 Score=90.48 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
.++|+|||||+.|+++|..|++.|.+|+|+++.+++.-. .++ ......+.+. +. ..++.++.+ .+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------~ld-~~~~~~l~~~---l~-~~GV~v~~~~~v 205 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------QLD-QTAGRLLQRE---LE-QKGLTFLLEKDT 205 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------hcC-HHHHHHHHHH---HH-HcCCEEEeCCce
Confidence 578999999999999999999999999999988754310 111 1112222222 22 346777665 57
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
+++..+.....+...+ + .++++|.||+|+|.+|+..
T Consensus 206 ~~i~~~~~~~~v~~~d-G--------~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 206 VEIVGATKADRIRFKD-G--------SSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EEEEcCCceEEEEECC-C--------CEEEcCEEEECCCCCcCcH
Confidence 7776544332222211 1 3799999999999998764
No 156
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.14 E-value=1.3e-05 Score=84.74 Aligned_cols=158 Identities=19% Similarity=0.159 Sum_probs=111.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||+.|+++|..|+..+.+|||+++.+.+.. . ..+.+. +.+..++.++.+ .+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~--------------~---~~l~~~---l~~~~gV~i~~~~~v 411 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA--------------D---KVLQDK---LKSLPNVDILTSAQT 411 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh--------------h---HHHHHH---HhcCCCCEEEECCee
Confidence 67999999999999999999999999999998764420 0 011221 333346777665 67
Q ss_pred EEEeCCCCE---EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561 188 IGIDTDKHE---VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS 264 (441)
Q Consensus 188 ~~id~~~~~---v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a 264 (441)
.++..++.. +.+.+..+ +++..+++|.|++|+|..|+...+... +
T Consensus 412 ~~i~~~~~~v~~v~~~~~~~------~~~~~i~~D~vi~a~G~~Pn~~~l~~~-----------------------~--- 459 (515)
T TIGR03140 412 TEIVGDGDKVTGIRYQDRNS------GEEKQLDLDGVFVQIGLVPNTEWLKDA-----------------------V--- 459 (515)
T ss_pred EEEEcCCCEEEEEEEEECCC------CcEEEEEcCEEEEEeCCcCCchHHhhh-----------------------c---
Confidence 777655333 44444221 123478999999999999876422110 0
Q ss_pred cCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
+ ++.. |+|.||+++|| ++|+|||+|||+..+ .+++..|+.||..||.+|.
T Consensus 460 --------~------------~~~~-G~I~vd~~~~T-s~p~IyAaGDv~~~~--------~~~~~~A~~~G~~Aa~~i~ 509 (515)
T TIGR03140 460 --------E------------LNRR-GEIVIDERGRT-SVPGIFAAGDVTTVP--------YKQIIIAMGEGAKAALSAF 509 (515)
T ss_pred --------c------------cCCC-CeEEECCCCCC-CCCCEEEcccccCCc--------cceEEEEEccHHHHHHHHH
Confidence 0 0111 78999999999 999999999999432 2467789999999999999
Q ss_pred HHhc
Q 013561 345 KKIG 348 (441)
Q Consensus 345 ~~l~ 348 (441)
.+|.
T Consensus 510 ~~~~ 513 (515)
T TIGR03140 510 DYLI 513 (515)
T ss_pred HHHh
Confidence 8875
No 157
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.14 E-value=7.4e-06 Score=77.17 Aligned_cols=33 Identities=6% Similarity=0.110 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.|+|||+|++|++||..|+..|.+||||||..-
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 699999999999999999999999999999753
No 158
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.13 E-value=8.1e-06 Score=90.82 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=67.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++++|||||+.|+++|..|++.|.+|+|+++.+++.-. .++ ......+.+. +. ..++.++.+ .+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------~ld-~~~~~~l~~~---L~-~~GV~v~~~~~v 210 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------QLD-QMGGEQLRRK---IE-SMGVRVHTSKNT 210 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------hcC-HHHHHHHHHH---HH-HCCCEEEcCCeE
Confidence 578999999999999999999999999999998754310 111 1122223333 32 346777655 67
Q ss_pred EEEeCCC--CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 188 IGIDTDK--HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 188 ~~id~~~--~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
.+|..+. ....+...+ ..++++|.||+|+|.+|+..
T Consensus 211 ~~I~~~~~~~~~~v~~~d---------G~~i~~D~Vv~A~G~rPn~~ 248 (847)
T PRK14989 211 LEIVQEGVEARKTMRFAD---------GSELEVDFIVFSTGIRPQDK 248 (847)
T ss_pred EEEEecCCCceEEEEECC---------CCEEEcCEEEECCCcccCch
Confidence 7776432 222222211 13799999999999999763
No 159
>PRK09126 hypothetical protein; Provisional
Probab=98.13 E-value=1.5e-05 Score=81.11 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 56899999999999999999999999999999864
No 160
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.13 E-value=8.4e-06 Score=83.06 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
+|+||||||||+++|..|++.|++|+|+|+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 6999999999999999999999999999997
No 161
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.12 E-value=1.8e-05 Score=80.59 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+...+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 3456899999999999999999999999999999763
No 162
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.12 E-value=3e-06 Score=64.06 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=29.6
Q ss_pred EECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 114 VLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 114 IIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
|||||++||++|..|++.|++|+|+|++++.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999999775
No 163
>PRK09897 hypothetical protein; Provisional
Probab=98.11 E-value=1.7e-05 Score=83.77 Aligned_cols=37 Identities=5% Similarity=0.050 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~ 145 (441)
+++|+||||||+|+.+|..|.+. ..+|+|||++..++
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 35899999999999999999764 35899999976553
No 164
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.11 E-value=8e-06 Score=83.07 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
.++++|||+|++|+++|..|++.|++||++|+.++.+-...+ ......+.+. +. ..++.++. ..+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~---l~-~~gi~~~~~~~~ 201 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------PEVAEELAEL---LE-KYGVELLLGTKV 201 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh----------HHHHHHHHHH---HH-HCCcEEEeCCce
Confidence 469999999999999999999999999999999977621100 1122223333 23 34577644 478
Q ss_pred EEEeCCCCEEEEE--ecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561 188 IGIDTDKHEVYCE--TVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT 231 (441)
Q Consensus 188 ~~id~~~~~v~~~--~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~ 231 (441)
.+|+...+..... ... ....+++|.+++++|.+|+.
T Consensus 202 ~~i~~~~~~~~~~~~~~~--------~~~~~~~d~~~~~~g~~p~~ 239 (415)
T COG0446 202 VGVEGKGNTLVVERVVGI--------DGEEIKADLVIIGPGERPNV 239 (415)
T ss_pred EEEEcccCcceeeEEEEe--------CCcEEEeeEEEEeecccccH
Confidence 8898776543321 111 11478999999999999864
No 165
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.08 E-value=3e-05 Score=75.43 Aligned_cols=157 Identities=25% Similarity=0.188 Sum_probs=109.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 187 (441)
+++|+|||+|+.|+++|..|++.+.+|+++++.+.+.. . ..+.+. +.+..++.++. ..+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------------~-----~~~~~~---l~~~~gv~~~~~~~v 200 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------------E-----KILLDR---LRKNPNIEFLWNSTV 200 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------------C-----HHHHHH---HHhCCCeEEEeccEE
Confidence 57999999999999999999998999999998764320 0 111121 33333777764 478
Q ss_pred EEEeCCCCE--EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561 188 IGIDTDKHE--VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSE 265 (441)
Q Consensus 188 ~~id~~~~~--v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~ 265 (441)
.+++.+.+. +.+.+... +++.++++|.+|+|+|.+|+..-+. .. +.
T Consensus 201 ~~i~~~~~~~~v~~~~~~~------g~~~~i~~D~vi~a~G~~~~~~~l~--------------------~~---~~--- 248 (300)
T TIGR01292 201 KEIVGDNKVEGVKIKNTVT------GEEEELKVDGVFIAIGHEPNTELLK--------------------GL---LE--- 248 (300)
T ss_pred EEEEccCcEEEEEEEecCC------CceEEEEccEEEEeeCCCCChHHHH--------------------Hh---he---
Confidence 888765432 33333111 2235789999999999887642100 00 00
Q ss_pred CCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561 266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK 345 (441)
Q Consensus 266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~ 345 (441)
+++. |++.||+++|| ++|+|||+|||+.. .++++..|+.||+.||.+|.+
T Consensus 249 --------------------~~~~-g~i~v~~~~~t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 249 --------------------LDEG-GYIVTDEGMRT-SVPGVFAAGDVRDK--------GYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred --------------------ecCC-CcEEECCCCcc-CCCCEEEeecccCc--------chhhhhhhhhhHHHHHHHHHh
Confidence 0111 78999999999 99999999999942 357899999999999999986
Q ss_pred Hh
Q 013561 346 KI 347 (441)
Q Consensus 346 ~l 347 (441)
+|
T Consensus 299 ~~ 300 (300)
T TIGR01292 299 YL 300 (300)
T ss_pred hC
Confidence 54
No 166
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.08 E-value=1.6e-05 Score=80.89 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 589999999999999999999999999999875
No 167
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=4.7e-06 Score=80.84 Aligned_cols=131 Identities=17% Similarity=0.097 Sum_probs=79.5
Q ss_pred cCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 65 SSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 65 ~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+++.+++. | +|+-.|.-|++ +....+++. |+|++|||+||+++++|--++..|.++.++=|.+.+
T Consensus 160 AtGg~p~~-P---nIpG~E~gidS----Dgff~Lee~-------Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv 224 (478)
T KOG0405|consen 160 ATGGRPII-P---NIPGAELGIDS----DGFFDLEEQ-------PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV 224 (478)
T ss_pred EeCCccCC-C---CCCchhhcccc----ccccchhhc-------CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh
Confidence 45555532 2 35446666666 445666665 889999999999999999999999999999888765
Q ss_pred ccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEE
Q 013561 145 VFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223 (441)
Q Consensus 145 ~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~Lvl 223 (441)
+ +-.++.+...+.+. .+..++++.. ..++.+....+...+.-...+ ....+|.|+.
T Consensus 225 L-----------R~FD~~i~~~v~~~----~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~--------~i~~vd~llw 281 (478)
T KOG0405|consen 225 L-----------RGFDEMISDLVTEH----LEGRGINVHKNSSVTKVIKTDDGLELVITSHG--------TIEDVDTLLW 281 (478)
T ss_pred h-----------cchhHHHHHHHHHH----hhhcceeecccccceeeeecCCCceEEEEecc--------ccccccEEEE
Confidence 4 11112222222222 2234566543 345555433332111111000 1335999999
Q ss_pred cCCCCcCCCC
Q 013561 224 AAGAEPLTFG 233 (441)
Q Consensus 224 AtGs~p~~~~ 233 (441)
|+|+.|++.+
T Consensus 282 AiGR~Pntk~ 291 (478)
T KOG0405|consen 282 AIGRKPNTKG 291 (478)
T ss_pred EecCCCCccc
Confidence 9999998764
No 168
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.08 E-value=3.5e-05 Score=68.28 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=26.9
Q ss_pred EEECCCHHHHHHHHhhccC-----CCeEEEEcCCCC
Q 013561 113 VVLGTGWGACRFLKGIDTK-----IYDAVCISPRNH 143 (441)
Q Consensus 113 vIIGgG~aGl~aA~~L~~~-----g~~Vtvie~~~~ 143 (441)
+|||+|++|++++.+|.+. ..+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 6999999999999999765 579999999654
No 169
>PRK06834 hypothetical protein; Provisional
Probab=98.07 E-value=2.1e-05 Score=82.70 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46899999999999999999999999999999864
No 170
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.07 E-value=2e-05 Score=79.77 Aligned_cols=104 Identities=17% Similarity=0.232 Sum_probs=71.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE-E
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS-C 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v 187 (441)
..+|+++|+|+.|+++|..|...+++||+|++.+... ++ +....+...+..+ .+.+++.|+.++ +
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-----~~-----lf~~~i~~~~~~y----~e~kgVk~~~~t~~ 278 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-----PR-----LFGPSIGQFYEDY----YENKGVKFYLGTVV 278 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-----hh-----hhhHHHHHHHHHH----HHhcCeEEEEecce
Confidence 5689999999999999999999999999999998543 11 1111222333333 345688887764 5
Q ss_pred EEEeCCC-CEEE-EEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561 188 IGIDTDK-HEVY-CETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIK 235 (441)
Q Consensus 188 ~~id~~~-~~v~-~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip 235 (441)
.+++... .+++ +...+ ..++++|.|++++|++|++....
T Consensus 279 s~l~~~~~Gev~~V~l~d---------g~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 279 SSLEGNSDGEVSEVKLKD---------GKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred eecccCCCCcEEEEEecc---------CCEeccCeEEEeecccccccccc
Confidence 5565443 2332 22211 14899999999999999988655
No 171
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.06 E-value=2.3e-05 Score=83.05 Aligned_cols=158 Identities=19% Similarity=0.173 Sum_probs=113.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||+.|+++|..|+..+.+|||+++.+.+.- . ..+.+. +.+..++.++.+ .+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------~-----~~l~~~---l~~~~gI~i~~~~~v 410 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------D-----QVLQDK---LRSLPNVTIITNAQT 410 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------------c-----HHHHHH---HhcCCCcEEEECcEE
Confidence 67999999999999999999999999999988774420 0 112221 333357777664 67
Q ss_pred EEEeCCCCE---EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561 188 IGIDTDKHE---VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS 264 (441)
Q Consensus 188 ~~id~~~~~---v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a 264 (441)
+++..++.. +.+.+..+ +++.++++|.+++++|..|+...++..
T Consensus 411 ~~i~~~~g~v~~v~~~~~~~------g~~~~i~~D~v~~~~G~~p~~~~l~~~--------------------------- 457 (517)
T PRK15317 411 TEVTGDGDKVTGLTYKDRTT------GEEHHLELEGVFVQIGLVPNTEWLKGT--------------------------- 457 (517)
T ss_pred EEEEcCCCcEEEEEEEECCC------CcEEEEEcCEEEEeECCccCchHHhhh---------------------------
Confidence 788765433 34443221 223478999999999999875422110
Q ss_pred cCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561 265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN 344 (441)
Q Consensus 265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~ 344 (441)
+++ +.. |+|.||+++|| ++|+|||+|||+.. ..+.+..|+.+|..||.++.
T Consensus 458 -------v~~------------~~~-g~i~vd~~l~T-s~p~IyAaGDv~~~--------~~k~~~~A~~eG~~Aa~~~~ 508 (517)
T PRK15317 458 -------VEL------------NRR-GEIIVDARGAT-SVPGVFAAGDCTTV--------PYKQIIIAMGEGAKAALSAF 508 (517)
T ss_pred -------eee------------CCC-CcEEECcCCCC-CCCCEEECccccCC--------CCCEEEEhhhhHHHHHHHHH
Confidence 011 011 78999999999 99999999999943 23678899999999999999
Q ss_pred HHhc
Q 013561 345 KKIG 348 (441)
Q Consensus 345 ~~l~ 348 (441)
++|.
T Consensus 509 ~~l~ 512 (517)
T PRK15317 509 DYLI 512 (517)
T ss_pred HHHh
Confidence 9986
No 172
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.05 E-value=3.7e-05 Score=78.79 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
..+|+||||||+|+++|..|++.|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 568999999999999999999999999999986
No 173
>PRK06184 hypothetical protein; Provisional
Probab=98.04 E-value=1.6e-05 Score=83.92 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 458999999999999999999999999999998644
No 174
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.03 E-value=3.3e-05 Score=79.05 Aligned_cols=33 Identities=6% Similarity=0.187 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 479999999999999999999999999999976
No 175
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.03 E-value=4e-05 Score=77.67 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~ 144 (441)
+|+||||||+|+++|..|++.| ++|+|+|+.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 4899999999999999999999 999999998643
No 176
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.02 E-value=2.9e-05 Score=79.53 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+|+||||||||+++|..|++.|++|+|+|+...
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 799999999999999999999999999999754
No 177
>PRK06126 hypothetical protein; Provisional
Probab=98.02 E-value=3e-05 Score=82.65 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 46899999999999999999999999999999864
No 178
>PRK08244 hypothetical protein; Provisional
Probab=98.02 E-value=2.8e-05 Score=81.77 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=32.4
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
.+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 57999999999999999999999999999997643
No 179
>PRK06753 hypothetical protein; Provisional
Probab=98.01 E-value=1.8e-05 Score=79.92 Aligned_cols=34 Identities=9% Similarity=0.233 Sum_probs=32.0
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+|+|||||++|+++|..|++.|++|+|+|+++.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 7999999999999999999999999999998753
No 180
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.00 E-value=2.2e-05 Score=81.07 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=64.2
Q ss_pred CcEEEECCCHHHHHHHHhhcc--------------CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhc
Q 013561 110 PRVVVLGTGWGACRFLKGIDT--------------KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLS 175 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~--------------~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~ 175 (441)
++|+|||||++|+++|..|+. .+.+||||++.+.+. + ..+ ..+...+.+. +.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--~--------~~~-~~~~~~~~~~---L~ 239 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--G--------SFD-QALRKYGQRR---LR 239 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--c--------cCC-HHHHHHHHHH---HH
Confidence 589999999999999998864 378999999987654 1 111 1122222222 33
Q ss_pred CCCCEEEEE-EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561 176 SDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL 230 (441)
Q Consensus 176 ~~~~v~~~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~ 230 (441)
..+++++. ..+.+++. +.+.++++ .++++|.+|+++|.+|+
T Consensus 240 -~~gV~v~~~~~v~~v~~--~~v~~~~g-----------~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 240 -RLGVDIRTKTAVKEVLD--KEVVLKDG-----------EVIPTGLVVWSTGVGPG 281 (424)
T ss_pred -HCCCEEEeCCeEEEEeC--CEEEECCC-----------CEEEccEEEEccCCCCc
Confidence 35788774 47888864 35655442 37899999999998876
No 181
>PRK07588 hypothetical protein; Provisional
Probab=98.00 E-value=3.3e-05 Score=78.72 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 7999999999999999999999999999998654
No 182
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.99 E-value=5.8e-05 Score=76.79 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccC---CCeEEEEcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK---IYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~---g~~Vtvie~~ 141 (441)
..+|+||||||+|+++|..|++. |++|+|||+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 56899999999999999999998 9999999994
No 183
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.98 E-value=2.7e-05 Score=79.25 Aligned_cols=34 Identities=9% Similarity=0.259 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 4689999999999999999999999999999975
No 184
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=7.8e-06 Score=85.52 Aligned_cols=40 Identities=20% Similarity=0.446 Sum_probs=36.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
.+++++|+|||||.|||+||++|...|++|+|+|.+++++
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 3447799999999999999999999999999999998774
No 185
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.92 E-value=6.2e-05 Score=80.14 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
...+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3568999999999999999999999999999998643
No 186
>PLN02487 zeta-carotene desaturase
Probab=97.91 E-value=1.5e-05 Score=84.81 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=47.5
Q ss_pred cchhhhhcccccccccCCCCCCCC-CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 81 NAERIVEESESEYQELSYPGLEAT-KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 81 ~~e~~i~~~~~~~~~~~~~~~~~~-~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
.++|++.|...+.. .++..+.++ +..++++|+|||+|++|+++|..|.+.|++|+|+|+.++.+
T Consensus 47 ~l~r~~~d~~~~~~-~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 47 SLDSNVSDMSVNAP-KGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred HHHHHhhhhhcccc-ccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 58899999766532 233222222 22345699999999999999999999999999999987653
No 187
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.91 E-value=4.1e-05 Score=78.00 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
..+|+||||||+|+++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 458999999999999999999999999999998
No 188
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.90 E-value=8.9e-05 Score=79.10 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 568999999999999999999999999999998754
No 189
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.90 E-value=2.2e-05 Score=80.30 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+|+|||||.+|+++|..|++.|++|+|||+++..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 7999999999999999999999999999987753
No 190
>PRK11445 putative oxidoreductase; Provisional
Probab=97.90 E-value=9.3e-05 Score=74.40 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.+|+||||||||+++|..|++. ++|+|+|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 4799999999999999999999 99999999874
No 191
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.89 E-value=5.6e-05 Score=78.61 Aligned_cols=165 Identities=22% Similarity=0.161 Sum_probs=107.5
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S 186 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 186 (441)
.+++|+|||||+.|+.+|..|.+.|.+||++++.++... .. ....++. + +..++.|+.. .
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~------------~~--~~~~~~~----l-~~~GV~~~~~~~ 331 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM------------TA--RVEEIAH----A-EEEGVKFHFLCQ 331 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC------------CC--CHHHHHH----H-HhCCCEEEeccC
Confidence 368999999999999999999999999999998764210 00 0001111 1 2346666533 4
Q ss_pred EEEEeCC-CCE---EEEEec-----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHH
Q 013561 187 CIGIDTD-KHE---VYCETV-----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI 253 (441)
Q Consensus 187 v~~id~~-~~~---v~~~~~-----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~ 253 (441)
++++..+ ++. +.+... +.++. ...+++.++++|.||+|+|..|+...+.+.
T Consensus 332 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~---------------- 395 (449)
T TIGR01316 332 PVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETT---------------- 395 (449)
T ss_pred cEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhcc----------------
Confidence 5555432 222 222210 00000 012334579999999999998865322111
Q ss_pred HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHH
Q 013561 254 RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAE 333 (441)
Q Consensus 254 ~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~ 333 (441)
. +++ +.. |+|.||+++|| +.|+|||+|||+. .+.++..|+
T Consensus 396 ------g-----------l~~------------~~~-G~i~vd~~~~T-s~~~VfA~GD~~~---------g~~~v~~Ai 435 (449)
T TIGR01316 396 ------R-----------LKT------------SER-GTIVVDEDQRT-SIPGVFAGGDIIL---------GAATVIRAM 435 (449)
T ss_pred ------C-----------ccc------------CCC-CeEEeCCCCcc-CCCCEEEecCCCC---------CcHHHHHHH
Confidence 0 011 111 78999999999 9999999999982 367999999
Q ss_pred HHHHHHHHHHHHHh
Q 013561 334 RQGKYLAELFNKKI 347 (441)
Q Consensus 334 ~qg~~aA~nI~~~l 347 (441)
+||+.||.+|+++|
T Consensus 436 ~~G~~AA~~I~~~L 449 (449)
T TIGR01316 436 GQGKRAAKSINEYL 449 (449)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999765
No 192
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.89 E-value=4.6e-05 Score=77.78 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~ 143 (441)
.+|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 47999999999999999999985 99999999764
No 193
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.88 E-value=9.7e-06 Score=74.22 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=33.6
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
+|+|||+||+||+||++|++.|.+|+|||++.+++
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~G 66 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFG 66 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCCceEEEEEeecccC
Confidence 89999999999999999999999999999998775
No 194
>PLN02985 squalene monooxygenase
Probab=97.87 E-value=8e-05 Score=78.70 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
...+|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 35689999999999999999999999999999974
No 195
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.85 E-value=0.00011 Score=75.56 Aligned_cols=183 Identities=14% Similarity=0.098 Sum_probs=97.4
Q ss_pred EEECCCHHHHHHH-Hhhc----cCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EE
Q 013561 113 VVLGTGWGACRFL-KGID----TKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-AS 186 (441)
Q Consensus 113 vIIGgG~aGl~aA-~~L~----~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~ 186 (441)
+|++.|+.|++.+ ..++ +.|.+|++++..+... +.. .+...+.+. +.+ .++.++. .+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppsl-----pG~--------rL~~aL~~~---l~~-~Gv~I~~g~~ 281 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSV-----PGL--------RLQNALRRA---FER-LGGRIMPGDE 281 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCC-----chH--------HHHHHHHHH---HHh-CCCEEEeCCE
Confidence 7788999999988 5554 4799999998876433 111 122223332 333 3555544 48
Q ss_pred EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC---CCCCcccccccccC--HhHHHHH-HHHHHHh
Q 013561 187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF---GIKGVKENAYFLRE--VNHAQEI-RKKLLLN 260 (441)
Q Consensus 187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~---~ipG~~~~~~~l~~--~~~a~~~-~~~i~~~ 260 (441)
|.+++.++..+....... +++..+.+|.+|+|+|+....- ...++.|-++.+.- ..+-... ...+
T Consensus 282 V~~v~~~~~~V~~v~~~~------g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~--- 352 (422)
T PRK05329 282 VLGAEFEGGRVTAVWTRN------HGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDF--- 352 (422)
T ss_pred EEEEEEeCCEEEEEEeeC------CceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhh---
Confidence 888876665554322111 1234689999999999853211 12233343433321 1111000 0000
Q ss_pred cccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCccc------CCCCCEEEecccccccccCCCCCCCchHHHHHH
Q 013561 261 LMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRA------PSVEDVFALGDCAGFLEQTGKPVLPALAQVAER 334 (441)
Q Consensus 261 ~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt------~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~ 334 (441)
+ +. ... .. =.|.||+.||. +.++|+||+|++..-+++--+ -.-.-+|+.
T Consensus 353 ~--~~-~p~--------------~~-----~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~---~~g~Gva~~ 407 (422)
T PRK05329 353 F--AP-HPF--------------LQ-----FGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIRE---GCGSGVALA 407 (422)
T ss_pred c--cC-Cch--------------hh-----cCceECCCcCcccCCCCeeccceEEeeehhcCCchHHh---CCCchhHHH
Confidence 0 00 000 00 12445555443 168999999999854332100 011237888
Q ss_pred HHHHHHHHHHHH
Q 013561 335 QGKYLAELFNKK 346 (441)
Q Consensus 335 qg~~aA~nI~~~ 346 (441)
.|-.||++|.+.
T Consensus 408 ta~~a~~~~~~~ 419 (422)
T PRK05329 408 TALHAAEQIAEE 419 (422)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 196
>PRK07190 hypothetical protein; Provisional
Probab=97.83 E-value=8.9e-05 Score=77.90 Aligned_cols=36 Identities=14% Similarity=-0.005 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|+||||||+|+.+|..|++.|.+|+|||+.+..
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 358999999999999999999999999999998743
No 197
>PRK12831 putative oxidoreductase; Provisional
Probab=97.79 E-value=0.00016 Score=75.52 Aligned_cols=167 Identities=20% Similarity=0.157 Sum_probs=107.2
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S 186 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 186 (441)
.+++|+|||||+.|+.+|..|.+.|.+||++++.+..... .. ...+... ...++.++.. .
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~-----------a~---~~e~~~a-----~~eGV~i~~~~~ 340 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP-----------AR---VEEVHHA-----KEEGVIFDLLTN 340 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC-----------CC---HHHHHHH-----HHcCCEEEeccc
Confidence 3789999999999999999999999999999886532100 00 0011111 1235555433 3
Q ss_pred EEEEeCC-CCE---EEEEec-----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHH
Q 013561 187 CIGIDTD-KHE---VYCETV-----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI 253 (441)
Q Consensus 187 v~~id~~-~~~---v~~~~~-----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~ 253 (441)
++.+..+ +.. +.+... +.++. ..++++.++++|.||+|+|..|+...+...
T Consensus 341 ~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~---------------- 404 (464)
T PRK12831 341 PVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTT---------------- 404 (464)
T ss_pred ceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhccc----------------
Confidence 4444322 122 222110 00010 012334579999999999998875321110
Q ss_pred HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCC-cccCCCCCEEEecccccccccCCCCCCCchHHHH
Q 013561 254 RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEW-LRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVA 332 (441)
Q Consensus 254 ~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~-lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A 332 (441)
.++++. .. |.|.||++ +|| +.|+|||+|||+ ..+.+++.|
T Consensus 405 ----------------~gl~~~------------~~-G~i~vd~~~~~T-s~pgVfAaGD~~---------~g~~~v~~A 445 (464)
T PRK12831 405 ----------------KGLKIN------------KR-GCIVADEETGLT-SKEGVFAGGDAV---------TGAATVILA 445 (464)
T ss_pred ----------------CCceEC------------CC-CcEEECCCCCcc-CCCCEEEeCCCC---------CCchHHHHH
Confidence 001111 11 78999998 899 999999999998 236789999
Q ss_pred HHHHHHHHHHHHHHhc
Q 013561 333 ERQGKYLAELFNKKIG 348 (441)
Q Consensus 333 ~~qg~~aA~nI~~~l~ 348 (441)
+.+|+.||.+|+++|.
T Consensus 446 i~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 446 MGAGKKAAKAIDEYLS 461 (464)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999985
No 198
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.78 E-value=9.2e-05 Score=74.64 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=60.5
Q ss_pred CCcEEEECCCHHHHHHHHhhcc----CC--CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT----KI--YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYF 182 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~----~g--~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 182 (441)
.++|+|||+|++|+++|..|++ .| .+|+|+ ..+.+.. ... ......+.+. +. ..++++
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~----------~~~-~~~~~~~~~~---l~-~~gV~v 208 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLP----------GFP-AKVRRLVLRL---LA-RRGIEV 208 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccc----------cCC-HHHHHHHHHH---HH-HCCCEE
Confidence 5689999999999999988864 34 589999 3333220 011 1122222222 22 357777
Q ss_pred EEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561 183 YLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT 231 (441)
Q Consensus 183 ~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~ 231 (441)
+.+ .+..++.+ .+.+.++ .++++|.||+|+|.+|+.
T Consensus 209 ~~~~~v~~i~~~--~v~~~~g-----------~~i~~D~vi~a~G~~p~~ 245 (364)
T TIGR03169 209 HEGAPVTRGPDG--ALILADG-----------RTLPADAILWATGARAPP 245 (364)
T ss_pred EeCCeeEEEcCC--eEEeCCC-----------CEEecCEEEEccCCChhh
Confidence 765 67777543 5555432 378999999999998863
No 199
>PRK07208 hypothetical protein; Provisional
Probab=97.76 E-value=2.5e-05 Score=81.77 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
+++++|+|||||++||++|..|.+.|++|+|+|++++++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456789999999999999999999999999999999875
No 200
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.76 E-value=2e-05 Score=72.52 Aligned_cols=36 Identities=11% Similarity=-0.007 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
.+|+|||+||+||+||++|++.|++|.|||++..++
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~G 53 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPG 53 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-B
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 489999999999999999999999999999987664
No 201
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.76 E-value=9.3e-05 Score=74.44 Aligned_cols=105 Identities=17% Similarity=0.080 Sum_probs=62.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S 186 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 186 (441)
.++|+|||+|+.|+++|..|.+.|.+ |+|+++.+... ... ....... +. ..++.++.+ .
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-----------~~~---~~~~~~~----l~-~~gi~i~~~~~ 232 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-----------APA---GKYEIER----LI-ARGVEFLELVT 232 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-----------CCC---CHHHHHH----HH-HcCCEEeeccC
Confidence 57999999999999999999888886 99998765311 000 0111121 22 235666554 5
Q ss_pred EEEEeCCCC--EEEEEecCC-----CC----CCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 187 CIGIDTDKH--EVYCETVNN-----GK----LSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 187 v~~id~~~~--~v~~~~~~~-----~~----~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
+++++.+++ .+.+..... .+ ....+++.++++|.||+|+|.+|+..
T Consensus 233 v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 289 (352)
T PRK12770 233 PVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPP 289 (352)
T ss_pred ceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCch
Confidence 666654433 222221100 00 00112345789999999999998653
No 202
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=2.3e-05 Score=80.50 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=34.8
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF 146 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~ 146 (441)
+||+|+|||.|||+||.+|+..|++|||+|++++.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 4899999999999999999999999999999998863
No 203
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.73 E-value=0.0002 Score=76.49 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=107.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
+++|+|||||+.|+++|..|++.|.+||++++.+.+.. .. .+... +....++.++.+ .+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~-------------~~----~~~~~---~~~~~gV~i~~~~~V 202 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC-------------AK----LIAEK---VKNHPKIEVKFNTEL 202 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc-------------CH----HHHHH---HHhCCCcEEEeCCEE
Confidence 68999999999999999999999999999998875320 00 01111 222346776644 68
Q ss_pred EEEeCCCCE--EEEEecCCCCCCCCCCcce--eeCCE----EEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH
Q 013561 188 IGIDTDKHE--VYCETVNNGKLSHEPHQFK--VAYDK----LVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL 259 (441)
Q Consensus 188 ~~id~~~~~--v~~~~~~~~~~~~~~~~~~--i~yD~----LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~ 259 (441)
.+++.+... +.+....+ +++.+ +++|. |++|+|..|+..-...
T Consensus 203 ~~i~~~~~v~~v~~~~~~~------G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~----------------------- 253 (555)
T TIGR03143 203 KEATGDDGLRYAKFVNNVT------GEITEYKAPKDAGTFGVFVFVGYAPSSELFKG----------------------- 253 (555)
T ss_pred EEEEcCCcEEEEEEEECCC------CCEEEEeccccccceEEEEEeCCCCChhHHhh-----------------------
Confidence 888754432 22222111 11222 23666 9999999987641110
Q ss_pred hcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHH
Q 013561 260 NLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYL 339 (441)
Q Consensus 260 ~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~a 339 (441)
.+ + ++.+ |+|.||+++|| ++|+|||+|||+. ..+..+..|++||+.|
T Consensus 254 ~l-----------~------------l~~~-G~I~vd~~~~T-s~p~IyAaGDv~~--------~~~~~v~~A~~~G~~A 300 (555)
T TIGR03143 254 VV-----------E------------LDKR-GYIPTNEDMET-NVPGVYAAGDLRP--------KELRQVVTAVADGAIA 300 (555)
T ss_pred hc-----------c------------cCCC-CeEEeCCcccc-CCCCEEEceeccC--------CCcchheeHHhhHHHH
Confidence 00 0 1111 78999999999 9999999999972 1245677899999999
Q ss_pred HHHHHHHhcc
Q 013561 340 AELFNKKIGE 349 (441)
Q Consensus 340 A~nI~~~l~~ 349 (441)
|.||.++|..
T Consensus 301 a~~i~~~l~~ 310 (555)
T TIGR03143 301 ATSAERYVKE 310 (555)
T ss_pred HHHHHHHHHh
Confidence 9999999963
No 204
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.73 E-value=2.6e-05 Score=80.71 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=33.4
Q ss_pred CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMV 145 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~ 145 (441)
++|+|||||.+||+||..|++.| ++|+|+|++++++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 47999999999999999999977 9999999999875
No 205
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.73 E-value=2.9e-05 Score=81.56 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=34.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
.++|||||||+.||.+|..|++.|++|+|+|+++..+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 5799999999999999999999999999999988765
No 206
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.72 E-value=9.6e-05 Score=75.71 Aligned_cols=33 Identities=6% Similarity=0.085 Sum_probs=30.4
Q ss_pred EEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 113 VVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 113 vIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
+|||||++|+.||..+++.|++|+|+|+++..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G 33 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG 33 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccc
Confidence 699999999999999999999999999987653
No 207
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.71 E-value=3.1e-05 Score=76.88 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+|+|||||++|+++|..|++.|++|+|||+++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 7999999999999999999999999999998765
No 208
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.71 E-value=0.00017 Score=73.03 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~ 143 (441)
+|+|||||+||+++|..|++. |++|+|+|+.+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 489999999999999999976 999999999873
No 209
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.70 E-value=0.00027 Score=73.99 Aligned_cols=174 Identities=15% Similarity=0.065 Sum_probs=106.9
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCcccccc--chhhhhhhhcCCCCEEEEE
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAE--PVSRIQTSLSSDPNSYFYL 184 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~v~~~~ 184 (441)
.+++|+|||||+.|+.+|..+.+.|. +||+++..+...... ........... .+.. + +..++.++.
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~-~~~GV~i~~ 348 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------NKNNPWPYWPMKLEVSN----A-HEEGVEREF 348 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------ccccCCcccchHHHHHH----H-HHcCCeEEe
Confidence 36899999999999999998888775 799887655322100 00000000000 1111 1 224666655
Q ss_pred E-EEEEEeCCCCEEE---EEecC--CC-CCCCCCCcceeeCCEEEEcCCCCcCCCCC-CCcccccccccCHhHHHHHHHH
Q 013561 185 A-SCIGIDTDKHEVY---CETVN--NG-KLSHEPHQFKVAYDKLVIAAGAEPLTFGI-KGVKENAYFLREVNHAQEIRKK 256 (441)
Q Consensus 185 ~-~v~~id~~~~~v~---~~~~~--~~-~~~~~~~~~~i~yD~LvlAtGs~p~~~~i-pG~~~~~~~l~~~~~a~~~~~~ 256 (441)
. .+++|..++..+. +.... ++ .....+++.++++|.||+|+|..|+...+ ...
T Consensus 349 ~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~------------------- 409 (471)
T PRK12810 349 NVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQF------------------- 409 (471)
T ss_pred ccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhcccc-------------------
Confidence 4 5666654333332 21110 00 00112344679999999999988864321 110
Q ss_pred HHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeC-CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHH
Q 013561 257 LLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVD-EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQ 335 (441)
Q Consensus 257 i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd-~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~q 335 (441)
. +++ +.. |.|.|| +++|| +.|+|||+|||+. .+.++..|+.|
T Consensus 410 ---g-----------l~~------------~~~-g~i~vd~~~~~T-s~~gVfa~GD~~~---------g~~~~~~Av~~ 452 (471)
T PRK12810 410 ---G-----------VEL------------DER-GRVAAPDNAYQT-SNPKVFAAGDMRR---------GQSLVVWAIAE 452 (471)
T ss_pred ---C-----------ccc------------CCC-CCEEeCCCcccC-CCCCEEEccccCC---------CchhHHHHHHH
Confidence 0 000 111 779998 79999 9999999999992 34689999999
Q ss_pred HHHHHHHHHHHhc
Q 013561 336 GKYLAELFNKKIG 348 (441)
Q Consensus 336 g~~aA~nI~~~l~ 348 (441)
|+.||.+|.++|.
T Consensus 453 G~~AA~~i~~~L~ 465 (471)
T PRK12810 453 GRQAARAIDAYLM 465 (471)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999996
No 210
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.69 E-value=0.0017 Score=65.68 Aligned_cols=46 Identities=35% Similarity=0.390 Sum_probs=38.8
Q ss_pred ceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 013561 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 292 ~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l 347 (441)
+|.||+.+.| +.+++|++||++- +..-.+.|...|-.+|+.|....
T Consensus 438 ri~~d~~~~t-~i~gLy~aGdGAG---------~argI~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 438 RIKVDEDLST-SIKGLYPAGDGAG---------LARGIVSAAADGIKAAEGIARKY 483 (486)
T ss_pred eEeeccccee-eecceEEcccccc---------ccchhHHHhhhhHHHHHHHHHHh
Confidence 6889999888 9999999999993 34457778899999999998654
No 211
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.68 E-value=5.4e-05 Score=76.68 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=65.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccC-------------CCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK-------------IYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLS 175 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~-------------g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~ 175 (441)
..+|+|+|||+.|+++|-+|+.. ..+|+|||+.++++ |.+ ++.......+. +
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL--p~~---------~~~l~~~a~~~---L- 219 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL--PMF---------PPKLSKYAERA---L- 219 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--cCC---------CHHHHHHHHHH---H-
Confidence 34799999999999999887531 24999999999776 322 12222223333 2
Q ss_pred CCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 176 SDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 176 ~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
++.+|++..+ .|++++. +.|+++++. .++++|.+|-|+|.+++..
T Consensus 220 ~~~GV~v~l~~~Vt~v~~--~~v~~~~g~----------~~I~~~tvvWaaGv~a~~~ 265 (405)
T COG1252 220 EKLGVEVLLGTPVTEVTP--DGVTLKDGE----------EEIPADTVVWAAGVRASPL 265 (405)
T ss_pred HHCCCEEEcCCceEEECC--CcEEEccCC----------eeEecCEEEEcCCCcCChh
Confidence 3357777665 7888875 456665531 1599999999999886543
No 212
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.68 E-value=0.00014 Score=75.78 Aligned_cols=167 Identities=20% Similarity=0.127 Sum_probs=109.9
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA- 185 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 185 (441)
.+++|+|||||+.|+.+|..|.+.|. +||++++.+..... .... .+.. +. ..++.++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~----------~~~~----~~~~----~~-~~GV~i~~~~ 332 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMP----------ASEE----EVEH----AK-EEGVEFEWLA 332 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC----------CCHH----HHHH----HH-HCCCEEEecC
Confidence 36799999999999999999999988 89999987532210 0000 1111 22 346776654
Q ss_pred EEEEEeCCCCE---EEEEecC-----CCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHH
Q 013561 186 SCIGIDTDKHE---VYCETVN-----NGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIR 254 (441)
Q Consensus 186 ~v~~id~~~~~---v~~~~~~-----~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~ 254 (441)
.+..+..+++. +.+.... ..+. ..++++.++++|.||+|+|..|+..-+...
T Consensus 333 ~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~----------------- 395 (457)
T PRK11749 333 APVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTT----------------- 395 (457)
T ss_pred CcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccc-----------------
Confidence 56666544422 4443210 0000 011234579999999999998874211100
Q ss_pred HHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHH
Q 013561 255 KKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAE 333 (441)
Q Consensus 255 ~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~ 333 (441)
.+++ ++.. |+|.||+ +++| +.|+|||+|||+. .++++..|+
T Consensus 396 ---------------~gl~------------~~~~-g~i~vd~~~~~T-s~~~VfA~GD~~~---------~~~~~~~A~ 437 (457)
T PRK11749 396 ---------------PGLE------------LNRW-GTIIADDETGRT-SLPGVFAGGDIVT---------GAATVVWAV 437 (457)
T ss_pred ---------------cCcc------------CCCC-CCEEeCCCCCcc-CCCCEEEeCCcCC---------CchHHHHHH
Confidence 0001 0111 7899998 7888 9999999999991 357899999
Q ss_pred HHHHHHHHHHHHHhc
Q 013561 334 RQGKYLAELFNKKIG 348 (441)
Q Consensus 334 ~qg~~aA~nI~~~l~ 348 (441)
.||+.+|.+|.++|.
T Consensus 438 ~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 438 GDGKDAAEAIHEYLE 452 (457)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999996
No 213
>PLN02268 probable polyamine oxidase
Probab=97.62 E-value=5.3e-05 Score=78.33 Aligned_cols=36 Identities=17% Similarity=0.415 Sum_probs=33.9
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
++|+|||||.+||+||+.|.+.|++|+|+|++++++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 379999999999999999999999999999999876
No 214
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.61 E-value=5.7e-05 Score=77.28 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
.+||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 468999999999999999999999999999998753
No 215
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.61 E-value=6.7e-05 Score=78.01 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+||||||||+++|..|++.|++|+|+|+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5699999999999999999999999999999975
No 216
>PRK07045 putative monooxygenase; Reviewed
Probab=97.60 E-value=5.8e-05 Score=76.79 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 458999999999999999999999999999998754
No 217
>PRK07233 hypothetical protein; Provisional
Probab=97.58 E-value=5.9e-05 Score=77.57 Aligned_cols=35 Identities=6% Similarity=0.182 Sum_probs=33.3
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
||+|||||.+||+||..|++.|++|+|+|++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 69999999999999999999999999999999775
No 218
>PRK08013 oxidoreductase; Provisional
Probab=97.57 E-value=7.2e-05 Score=76.53 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 46899999999999999999999999999999864
No 219
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.54 E-value=7.7e-05 Score=76.11 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+.+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 45899999999999999999999999999999874
No 220
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.52 E-value=0.00049 Score=76.28 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=107.4
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA- 185 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 185 (441)
.+++|||||||+.|+.+|..+.+.|.+ ||++++++...... .. ..+... +..++.++..
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----------~~----~e~~~~-----~~~GV~i~~~~ 629 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA----------RL----EEVKHA-----KEEGIEFLTLH 629 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC----------CH----HHHHHH-----HHcCCEEEecC
Confidence 368999999999999999999999987 99999876421100 00 001111 1235555433
Q ss_pred EEEEEeCC-CCE---EEEEec-----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHH
Q 013561 186 SCIGIDTD-KHE---VYCETV-----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQE 252 (441)
Q Consensus 186 ~v~~id~~-~~~---v~~~~~-----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~ 252 (441)
.++++..+ +.. +.+... +.++. ..++++.++++|.||+|+|..|+.......
T Consensus 630 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~--------------- 694 (752)
T PRK12778 630 NPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI--------------- 694 (752)
T ss_pred cceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc---------------
Confidence 34444322 222 222110 00110 112344579999999999998875321110
Q ss_pred HHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHH
Q 013561 253 IRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVA 332 (441)
Q Consensus 253 ~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A 332 (441)
.++++. .. |+|.||++++| +.|+|||+|||+. .+.+++.|
T Consensus 695 -----------------~gl~~~------------~~-G~i~vd~~~~T-s~~gVfA~GD~~~---------g~~~vv~A 734 (752)
T PRK12778 695 -----------------PGLELN------------RK-GTIVVDEEMQS-SIPGIYAGGDIVR---------GGATVILA 734 (752)
T ss_pred -----------------cCceEC------------CC-CCEEeCCCCCC-CCCCEEEeCCccC---------CcHHHHHH
Confidence 001111 11 78999999999 9999999999992 36789999
Q ss_pred HHHHHHHHHHHHHHhc
Q 013561 333 ERQGKYLAELFNKKIG 348 (441)
Q Consensus 333 ~~qg~~aA~nI~~~l~ 348 (441)
+.||+.||.+|.++|.
T Consensus 735 v~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 735 MGDGKRAAAAIDEYLS 750 (752)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999985
No 221
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.52 E-value=4.9e-05 Score=75.90 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=65.5
Q ss_pred CCcEEEECCCHHHHHHHHhhcc--------------CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhh
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT--------------KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSL 174 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~--------------~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~ 174 (441)
.-++|||||||.|+++|.+|+. ...+||++|..++++ +++ +. .+.+..+.+
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL--~mF--------dk-----rl~~yae~~ 282 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL--NMF--------DK-----RLVEYAENQ 282 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH--HHH--------HH-----HHHHHHHHH
Confidence 3478999999999999988852 457999999999765 221 11 122222112
Q ss_pred cCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561 175 SSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT 231 (441)
Q Consensus 175 ~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~ 231 (441)
..+.++.+..+ .|..++ .+.++++..+ |+..+++|--||-|||..|+.
T Consensus 283 f~~~~I~~~~~t~Vk~V~--~~~I~~~~~~-------g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 283 FVRDGIDLDTGTMVKKVT--EKTIHAKTKD-------GEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred hhhccceeecccEEEeec--CcEEEEEcCC-------CceeeecceEEEecCCCCCch
Confidence 23456777666 566554 4566666542 334689999999999987653
No 222
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.52 E-value=8.9e-05 Score=75.59 Aligned_cols=36 Identities=14% Similarity=0.042 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
.++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 468999999999999999999999999999976533
No 223
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.52 E-value=8.5e-05 Score=77.34 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=34.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccC----CCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK----IYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~----g~~Vtvie~~~~~~ 145 (441)
+++|+|||||++||++|..|.+. |++|+|+|++++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 46899999999999999999998 99999999999875
No 224
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.49 E-value=0.00066 Score=73.94 Aligned_cols=166 Identities=19% Similarity=0.144 Sum_probs=106.8
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA- 185 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 185 (441)
.+++|+|||||+.|+.+|..+.+.|. +|||+.+.+.... + ... ..+... + ..++.++..
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~m-p---------a~~----~ei~~a---~--~eGV~i~~~~ 382 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEM-P---------ANR----AEIEEA---L--AEGVSLRELA 382 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccC-C---------CCH----HHHHHH---H--HcCCcEEecc
Confidence 37899999999999999999998886 6999988763210 0 000 112221 1 235555543
Q ss_pred EEEEEeCCCCEEEE-----EecC--CCCC----CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHH
Q 013561 186 SCIGIDTDKHEVYC-----ETVN--NGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIR 254 (441)
Q Consensus 186 ~v~~id~~~~~v~~-----~~~~--~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~ 254 (441)
.+.+|..+++.+.+ ..+. ..+. ..++++..+++|.||+|+|..|+...+...
T Consensus 383 ~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~----------------- 445 (652)
T PRK12814 383 APVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAA----------------- 445 (652)
T ss_pred CcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccccccc-----------------
Confidence 34555433333222 1110 0000 112344579999999999988765321110
Q ss_pred HHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHH
Q 013561 255 KKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAE 333 (441)
Q Consensus 255 ~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~ 333 (441)
++++ +.. |+|.||+ +++| +.|+|||+|||+. .|.++..|+
T Consensus 446 ----------------gl~~------------~~~-G~I~vd~~~~~T-s~pgVfA~GDv~~---------g~~~v~~Ai 486 (652)
T PRK12814 446 ----------------GIGT------------SRN-GTVKVDPETLQT-SVAGVFAGGDCVT---------GADIAINAV 486 (652)
T ss_pred ----------------Cccc------------cCC-CcEeeCCCCCcC-CCCCEEEcCCcCC---------CchHHHHHH
Confidence 0011 011 7899997 5788 9999999999982 367899999
Q ss_pred HHHHHHHHHHHHHhc
Q 013561 334 RQGKYLAELFNKKIG 348 (441)
Q Consensus 334 ~qg~~aA~nI~~~l~ 348 (441)
+||+.||.+|.++|.
T Consensus 487 ~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 487 EQGKRAAHAIDLFLN 501 (652)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999996
No 225
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.48 E-value=0.00011 Score=74.30 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 489999999999999999999999999999974
No 226
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.46 E-value=0.00011 Score=76.78 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccC------CCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK------IYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~------g~~Vtvie~~~~~~ 145 (441)
+++|+|||||.+||+||..|.+. |++|+|+|++++++
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 35799999999999999999875 47999999999875
No 227
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.44 E-value=0.00012 Score=74.70 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 45899999999999999999999999999999874
No 228
>PLN02529 lysine-specific histone demethylase 1
Probab=97.44 E-value=0.00015 Score=79.22 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=34.0
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
...++|+|||||++||+||..|++.|++|+|+|++++
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 3467999999999999999999999999999999875
No 229
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.43 E-value=0.00012 Score=76.89 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=33.8
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
++|+|||||++||+||..|++.|++|+|+|+++..+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 479999999999999999999999999999998764
No 230
>PRK06185 hypothetical protein; Provisional
Probab=97.42 E-value=0.00015 Score=74.23 Aligned_cols=35 Identities=9% Similarity=0.056 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 56899999999999999999999999999999753
No 231
>PLN02576 protoporphyrinogen oxidase
Probab=97.42 E-value=0.00014 Score=76.51 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~~~~ 145 (441)
.++|+|||||++||++|..|.+. |++|+|+|++++++
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 45899999999999999999999 99999999999875
No 232
>PRK07538 hypothetical protein; Provisional
Probab=97.41 E-value=0.00014 Score=74.76 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+|+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 7999999999999999999999999999998743
No 233
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00017 Score=70.01 Aligned_cols=132 Identities=18% Similarity=0.098 Sum_probs=78.5
Q ss_pred cCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 65 SSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 65 ~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+++-+|.. + -+-+..|.-|++ +...+++.. +-|-+|||+||.+|+||-.|+..|++|||.=|+--+
T Consensus 168 atG~RPrY-p--~IpG~~Ey~ITS----DDlFsl~~~-------PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L 233 (503)
T KOG4716|consen 168 ATGLRPRY-P--DIPGAKEYGITS----DDLFSLPYE-------PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL 233 (503)
T ss_pred EecCCCCC-C--CCCCceeeeecc----cccccccCC-------CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeec
Confidence 45555532 1 123445555666 444555554 568899999999999999999999999999765311
Q ss_pred ccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE----EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCE
Q 013561 145 VFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA----SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDK 220 (441)
Q Consensus 145 ~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~ 220 (441)
.|. +.++...+... ++..++.|+.. .|..++. +.+.+...... .+++.+-.||.
T Consensus 234 ----------rGF--Dqdmae~v~~~----m~~~Gikf~~~~vp~~Veq~~~--g~l~v~~k~t~----t~~~~~~~ydT 291 (503)
T KOG4716|consen 234 ----------RGF--DQDMAELVAEH----MEERGIKFLRKTVPERVEQIDD--GKLRVFYKNTN----TGEEGEEEYDT 291 (503)
T ss_pred ----------ccc--cHHHHHHHHHH----HHHhCCceeecccceeeeeccC--CcEEEEeeccc----ccccccchhhh
Confidence 121 22333333333 33457777655 3444443 33333322111 12334567999
Q ss_pred EEEcCCCCcCCC
Q 013561 221 LVIAAGAEPLTF 232 (441)
Q Consensus 221 LvlAtGs~p~~~ 232 (441)
|+.|.|+.+.+.
T Consensus 292 Vl~AiGR~~~~~ 303 (503)
T KOG4716|consen 292 VLWAIGRKALTD 303 (503)
T ss_pred hhhhhccccchh
Confidence 999999987543
No 234
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.00016 Score=74.52 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||.||++||...++.|.++.++.-+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 4689999999999999999999999999987653
No 235
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.38 E-value=0.00015 Score=75.43 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=33.0
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
||+|||||++||++|..|.+.|++|+|+|++++++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 59999999999999999999999999999998765
No 236
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.37 E-value=0.00016 Score=74.04 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=32.1
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
++|+|||||.+|+++|.+|++.|++|+|+|+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999864
No 237
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.37 E-value=0.00023 Score=75.09 Aligned_cols=41 Identities=5% Similarity=-0.021 Sum_probs=34.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHhhccC----CCeEEEEcCCCCcc
Q 013561 105 KPGEKPRVVVLGTGWGACRFLKGIDTK----IYDAVCISPRNHMV 145 (441)
Q Consensus 105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~----g~~Vtvie~~~~~~ 145 (441)
...++++|+|||||.|||++|..|.+. |++|+|+|+.+..+
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 344467999999999999999999884 68999999988653
No 238
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.37 E-value=0.00014 Score=76.78 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=32.4
Q ss_pred EEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 112 VVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 112 VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
|||||||.+||+||..|++.|++|+|+|++++++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence 6999999999999999999999999999999875
No 239
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.36 E-value=0.00018 Score=72.92 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
.+|+|||||++|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 47999999999999999999999999999986
No 240
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.36 E-value=0.00017 Score=70.40 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
+.||+|||+|.+||+||..|++. ++|||||.+++.+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlG 43 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLG 43 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEecccccc
Confidence 66999999999999999999987 8999999999876
No 241
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.35 E-value=0.00016 Score=74.27 Aligned_cols=36 Identities=6% Similarity=0.130 Sum_probs=33.7
Q ss_pred CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMV 145 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~ 145 (441)
++|+|||||.+||++|.+|++.+ ++|||+|++++.+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 47999999999999999999998 9999999998876
No 242
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0014 Score=64.51 Aligned_cols=97 Identities=22% Similarity=0.153 Sum_probs=69.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v 187 (441)
.++|+|||||..++..|..|.+.+.+||++-+++.+.- . + ...++ +.+...+.++.+ .+
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------~-~---~~~~~----l~~~~~i~~~~~~~i 202 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------E-E---ILVER----LKKNVKIEVLTNTVV 202 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------------C-H---HHHHH----HHhcCCeEEEeCCce
Confidence 56999999999999999999999889999998885540 0 0 11222 233335666554 77
Q ss_pred EEEeCCC-CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 188 IGIDTDK-HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 188 ~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
.++.-+. ..+.+++.. +++.++.+|.+++++|..|+..
T Consensus 203 ~ei~G~~v~~v~l~~~~-------~~~~~~~~~gvf~~iG~~p~~~ 241 (305)
T COG0492 203 KEILGDDVEGVVLKNVK-------GEEKELPVDGVFIAIGHLPNTE 241 (305)
T ss_pred eEEecCccceEEEEecC-------CceEEEEeceEEEecCCCCchH
Confidence 7777654 566676632 2345889999999999998764
No 243
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.35 E-value=0.00019 Score=73.81 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~ 144 (441)
+|+|||||++||++|..|++.| .+|+|+|+.+.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 7999999999999999999988 599999998764
No 244
>PLN02568 polyamine oxidase
Probab=97.33 E-value=0.00023 Score=75.55 Aligned_cols=38 Identities=18% Similarity=0.418 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCC-----CeEEEEcCCCCcc
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKI-----YDAVCISPRNHMV 145 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g-----~~Vtvie~~~~~~ 145 (441)
+.++|+|||||++||++|..|.+.| ++|+|+|++++.+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 3568999999999999999999876 8999999998764
No 245
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.33 E-value=0.00058 Score=71.19 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=59.4
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC 187 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 187 (441)
..|+|+|||+|..|+..|..|+..+.+|+++.+..... . .... +. ...++ +....+
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~-----------~--~~~~--~~--------~~~~v-~~~~~I 258 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD-----------T--YEKL--PV--------PQNNL-WMHSEI 258 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc-----------c--cccC--cC--------CCCce-EECCcc
Confidence 46899999999999999999999888999998865321 0 0000 00 00111 112223
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIK 235 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip 235 (441)
..+. +++.|.++++ ..+++|.||+|||..+++|-++
T Consensus 259 ~~~~-~~g~V~f~DG-----------~~~~~D~Ii~~TGy~~~~pfL~ 294 (461)
T PLN02172 259 DTAH-EDGSIVFKNG-----------KVVYADTIVHCTGYKYHFPFLE 294 (461)
T ss_pred ccee-cCCeEEECCC-----------CCccCCEEEECCcCCccccccC
Confidence 3332 2344666553 2578999999999999877544
No 246
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.30 E-value=0.00022 Score=76.93 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
++.+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 36789999999999999999999999999999975
No 247
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.29 E-value=0.00028 Score=74.01 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+++|+|||+|++|+++|..|.+.|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5689999999999999999999999999999775
No 248
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.29 E-value=0.00023 Score=70.61 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
+|+|||||.+|+++|..|++.|++|+|+|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 5899999999999999999999999999998
No 249
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00027 Score=71.56 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
++.+|+|||||.+|+++|..|++.|++|+|+|+..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 36799999999999999999999999999999875
No 250
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.23 E-value=0.00035 Score=76.77 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+++|+|||||++|+.+|..|.+.|++|+|+|+++++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 34678999999999999999999999999999998654
No 251
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.22 E-value=0.00032 Score=70.83 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||.+|+++|..|++.|++|+|+|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4589999999999999999999999999999975
No 252
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00042 Score=70.23 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=36.6
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF 146 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~ 146 (441)
+...+|+|||+|.+||.+|..|.+.||+|+|+|.+++++-
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 3367999999999999999999999999999999998863
No 253
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.21 E-value=0.00029 Score=72.81 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
+|||||||+||+.||..+++.|.+|+|||+.+.++
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lG 35 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLG 35 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSST
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCC
Confidence 58999999999999999999999999999998764
No 254
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.21 E-value=0.00036 Score=70.63 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=33.2
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
.+|+|||||++|+++|..|++.|.+|+|+|++++.+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 379999999999999999999999999999988765
No 255
>PLN02612 phytoene desaturase
Probab=97.17 E-value=0.00047 Score=73.83 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=34.2
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+++|+|||||++||++|..|.+.|++|+|+|++++.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~ 128 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL 128 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 33679999999999999999999999999999997653
No 256
>PTZ00367 squalene epoxidase; Provisional
Probab=97.14 E-value=0.00048 Score=73.51 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5689999999999999999999999999999975
No 257
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.14 E-value=0.00044 Score=69.25 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=27.7
Q ss_pred CcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCccccc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMVFTP 148 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~~~~ 148 (441)
.++++||.||++|++|..|...+ .++..+|+.+.+.|.+
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~ 42 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP 42 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC
Confidence 47999999999999999998754 8999999999887654
No 258
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.14 E-value=0.0012 Score=74.52 Aligned_cols=167 Identities=18% Similarity=0.140 Sum_probs=105.3
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S 186 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 186 (441)
.+++|+|||||..|+.+|..+.+.|.+||++.+++...+ | . ....+... . ..++.++.. .
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~m-p----------a---~~~e~~~a---~--eeGV~~~~~~~ 506 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEM-P----------A---RVEELHHA---L--EEGINLAVLRA 506 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccc-c----------c---cHHHHHHH---H--HCCCEEEeCcc
Confidence 478999999999999999999999999999988753211 0 0 00111111 1 235555432 3
Q ss_pred EEEEeCC--CCEEE---EE---e--cCCCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHH
Q 013561 187 CIGIDTD--KHEVY---CE---T--VNNGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI 253 (441)
Q Consensus 187 v~~id~~--~~~v~---~~---~--~~~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~ 253 (441)
++.+..+ ...+. +. . .+..+. ...+++.++++|.||+|+|..|+.. +...
T Consensus 507 p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~~---------------- 569 (944)
T PRK12779 507 PREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKDA---------------- 569 (944)
T ss_pred eEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhhc----------------
Confidence 4444322 11121 11 0 000000 1124456799999999999887632 1100
Q ss_pred HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHH
Q 013561 254 RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVA 332 (441)
Q Consensus 254 ~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A 332 (441)
..++|+. .. |.|.||+ +++| +.|+|||+|||+ ..+.+++.|
T Consensus 570 ---------------~~gle~~------------~~-G~I~vd~~~~~T-s~pgVFAaGD~~---------~G~~~vv~A 611 (944)
T PRK12779 570 ---------------EPGLKTN------------KW-GTIEVEKGSQRT-SIKGVYSGGDAA---------RGGSTAIRA 611 (944)
T ss_pred ---------------ccCceEC------------CC-CCEEECCCCCcc-CCCCEEEEEcCC---------CChHHHHHH
Confidence 0001111 11 7899997 5888 999999999999 235799999
Q ss_pred HHHHHHHHHHHHHHhc
Q 013561 333 ERQGKYLAELFNKKIG 348 (441)
Q Consensus 333 ~~qg~~aA~nI~~~l~ 348 (441)
+.+|+.||.+|.++|.
T Consensus 612 i~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 612 AGDGQAAAKEIVGEIP 627 (944)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999985
No 259
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.13 E-value=0.00054 Score=74.32 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~~~ 144 (441)
..+|+||||||+||++|..|++. |++|+|||+.+..
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~ 68 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR 68 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence 56899999999999999999995 9999999998643
No 260
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.13 E-value=0.00039 Score=72.83 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=32.9
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
+|+|||||.+|+++|..|++.|++|+|+|++++.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999999999999999999999999999998765
No 261
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.12 E-value=0.00047 Score=71.43 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHhhcc----CCCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDT----KIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~----~g~~Vtvie~~~ 142 (441)
+|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 69999999999999999998 799999999943
No 262
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.0025 Score=65.17 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccC---CCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK---IYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~---g~~Vtvie~~~~~~ 145 (441)
+++|+|||||+.|+.+|..|.+. ...|+|||+.+.++
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 35899999999999999999652 12399999998774
No 263
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.10 E-value=0.0027 Score=71.57 Aligned_cols=191 Identities=17% Similarity=0.131 Sum_probs=115.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccC-CC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK-IY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA- 185 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~-g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 185 (441)
+++|+|||||..|+.+|..+.+. |. +|+++++++.... +. .. ..+... + ..++.++..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~M-pa---------~~----eEl~~a---l--eeGVe~~~~~ 726 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYM-PA---------SR----EELEEA---L--EDGVDFKELL 726 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccc-cc---------CH----HHHHHH---H--HcCCEEEeCC
Confidence 78999999999999999988775 75 7999998763210 00 00 112222 1 135665543
Q ss_pred EEEEEeCCCCEEEEEec-----CCCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHH
Q 013561 186 SCIGIDTDKHEVYCETV-----NNGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~~-----~~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i 257 (441)
.+..++ ++.+.+... +..+. ...+++.++++|.||+|+|..|+...++..
T Consensus 727 ~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~-------------------- 784 (1012)
T TIGR03315 727 SPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKN-------------------- 784 (1012)
T ss_pred ceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhc--------------------
Confidence 344444 222332210 00000 012444579999999999988764211100
Q ss_pred HHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCC-cccCCCCCEEEecccccccccCCCCCCCchHHHHHHHH
Q 013561 258 LLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEW-LRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQG 336 (441)
Q Consensus 258 ~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~-lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg 336 (441)
. +++ +.. |+|.||++ ++| +.|+|||+|||+ ..|.++..|+.||
T Consensus 785 --G-----------L~l------------d~~-G~I~VD~~~~~T-s~pgVFAaGD~a---------~GP~tVv~AIaqG 828 (1012)
T TIGR03315 785 --G-----------IPL------------DEY-GWPVVNQATGET-NITNVFVIGDAN---------RGPATIVEAIADG 828 (1012)
T ss_pred --C-----------ccc------------CCC-CCEEeCCCCCcc-CCCCEEEEeCcC---------CCccHHHHHHHHH
Confidence 0 011 111 78999986 888 999999999998 2468999999999
Q ss_pred HHHHHHHHHHhccccCCCccccc----CCCCCCCceeecceeEEEecC
Q 013561 337 KYLAELFNKKIGEQDGGKALSAK----DINLGDPFVYKHLGSMATVGR 380 (441)
Q Consensus 337 ~~aA~nI~~~l~~~~~g~~~~~~----~~~~~~~f~~~~~g~~~~lG~ 380 (441)
+.||.+|.+... .+....+ +.+...+|.|..+|.+...+.
T Consensus 829 r~AA~nIl~~~~----~~~~~~~~~~~~~~~~~~~~Y~~kG~la~~~~ 872 (1012)
T TIGR03315 829 RKAANAILSREG----LNSDVDKVFPINEEVRLAEVYQKKGILVIDDH 872 (1012)
T ss_pred HHHHHHHhcccc----CCcccccccccccccccchhhccCcceeccCc
Confidence 999999986542 1110000 001125677888887765553
No 264
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.09 E-value=0.00047 Score=69.74 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+|+|||||.+|+++|..|++.|++|+|+|+.+.
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 699999999999999999999999999999753
No 265
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.07 E-value=0.00061 Score=72.02 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+..+|+|||||.+|+.+|..|++.|.+|+|+|+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 357899999999999999999999999999999754
No 266
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.06 E-value=0.0031 Score=68.84 Aligned_cols=166 Identities=18% Similarity=0.179 Sum_probs=106.5
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA- 185 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 185 (441)
.+++|+|||||+.|+.+|..+.+.|. +||++.+.+...+ +. ... .+.. + +..++.|+..
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~-~~---------~~~----e~~~----~-~~~Gv~~~~~~ 527 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANM-PG---------SKK----EVKN----A-REEGANFEFNV 527 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCC-CC---------CHH----HHHH----H-HHcCCeEEecc
Confidence 46899999999999999998888886 6999988764321 00 000 1111 1 1245666543
Q ss_pred EEEEEeC-CCCEE---EEEec-----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCC-CCCcccccccccCHhHHH
Q 013561 186 SCIGIDT-DKHEV---YCETV-----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFG-IKGVKENAYFLREVNHAQ 251 (441)
Q Consensus 186 ~v~~id~-~~~~v---~~~~~-----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~-ipG~~~~~~~l~~~~~a~ 251 (441)
.++++.. +++.+ .+... +.++. ...+++.++++|.||+|+|..|+... +...
T Consensus 528 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~-------------- 593 (654)
T PRK12769 528 QPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESH-------------- 593 (654)
T ss_pred CcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccccccc--------------
Confidence 4555532 22222 22110 01110 11244567999999999999887431 1110
Q ss_pred HHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC----CcccCCCCCEEEecccccccccCCCCCCCc
Q 013561 252 EIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE----WLRAPSVEDVFALGDCAGFLEQTGKPVLPA 327 (441)
Q Consensus 252 ~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~----~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~ 327 (441)
++++ +.. |.|.||+ ++|| +.|+|||+||++ ..+.
T Consensus 594 -------------------gl~~------------~~~-G~i~vd~~~~~~~~T-s~~gVfAaGD~~---------~g~~ 631 (654)
T PRK12769 594 -------------------GVTV------------DKW-GRIIADVESQYRYQT-SNPKIFAGGDAV---------RGAD 631 (654)
T ss_pred -------------------CCcC------------CCC-CCEEeCCCcccCccc-CCCCEEEcCCcC---------CCCc
Confidence 0111 111 7799986 4899 999999999998 2357
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 013561 328 LAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 328 ~a~~A~~qg~~aA~nI~~~l~ 348 (441)
+++.|+.||+.||.+|.++|.
T Consensus 632 ~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 632 LVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999984
No 267
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.05 E-value=0.0026 Score=66.52 Aligned_cols=165 Identities=19% Similarity=0.168 Sum_probs=106.2
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA- 185 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 185 (441)
..++|+|||||+.|+.+|..+.+.|. +||||++.+..... . .. ..+.. +. ..++.++..
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~--------~--~~----~e~~~----~~-~~GV~~~~~~ 341 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMP--------G--SR----REVAN----AR-EEGVEFLFNV 341 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCC--------C--CH----HHHHH----HH-hcCCEEEecC
Confidence 36899999999999999999888885 79999987643210 0 00 11111 11 246666554
Q ss_pred EEEEEeCC-CCEE---EEEec-----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCCC-CCcccccccccCHhHHH
Q 013561 186 SCIGIDTD-KHEV---YCETV-----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGI-KGVKENAYFLREVNHAQ 251 (441)
Q Consensus 186 ~v~~id~~-~~~v---~~~~~-----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~i-pG~~~~~~~l~~~~~a~ 251 (441)
.++++..+ +..+ .+... +.++. ..++++..+++|.||+|+|..|+...+ .+.
T Consensus 342 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~-------------- 407 (467)
T TIGR01318 342 QPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGH-------------- 407 (467)
T ss_pred CcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccccccc--------------
Confidence 45555432 2222 22110 00010 012344579999999999998874311 110
Q ss_pred HHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeC----CCcccCCCCCEEEecccccccccCCCCCCCc
Q 013561 252 EIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVD----EWLRAPSVEDVFALGDCAGFLEQTGKPVLPA 327 (441)
Q Consensus 252 ~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd----~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~ 327 (441)
++++ +.. |+|.|| ++++| +.|+|||+|||+. .+.
T Consensus 408 -------------------gl~~------------~~~-g~i~vd~~~~~~~~T-~~~gVfa~GD~~~---------~~~ 445 (467)
T TIGR01318 408 -------------------GITL------------DSW-GRIITGDVSYLPYQT-TNPKIFAGGDAVR---------GAD 445 (467)
T ss_pred -------------------CccC------------CCC-CCEEeCCccccCccC-CCCCEEEECCcCC---------Ccc
Confidence 0011 111 779999 67898 9999999999982 356
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 013561 328 LAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 328 ~a~~A~~qg~~aA~nI~~~l 347 (441)
++..|+.+|+.||.+|.++|
T Consensus 446 ~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 446 LVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999887
No 268
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.01 E-value=0.00068 Score=69.17 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~ 142 (441)
.+|+|||||.+|+++|..|++. |++|+|+|+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 5899999999999999999998 99999999975
No 269
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.00 E-value=0.00065 Score=71.56 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=32.9
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
+|+|||||.+||++|..|++.|++|+|+|+++..+
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 36 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG 36 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 69999999999999999999999999999998764
No 270
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.99 E-value=0.0027 Score=71.34 Aligned_cols=164 Identities=18% Similarity=0.132 Sum_probs=104.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccC-C-CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK-I-YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA- 185 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~-g-~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 185 (441)
+++|||||||..|+.+|..+.+. | .+|+++.+++.... +. . ...+... +. .++.++..
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~M-PA---------~----~eEle~A---le--eGVe~~~~~ 728 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEM-PA---------W----REEYEEA---LE--DGVEFKELL 728 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccc-cc---------c----HHHHHHH---HH--cCCEEEeCC
Confidence 78999999999999999988776 4 38999998763210 10 0 0112222 11 35665543
Q ss_pred EEEEEeCCCCEEEEEe-----cCCCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHH
Q 013561 186 SCIGIDTDKHEVYCET-----VNNGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257 (441)
Q Consensus 186 ~v~~id~~~~~v~~~~-----~~~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i 257 (441)
.+..++.+. .+.+.. .+..+. ...+++.++++|.||+|+|..|+...++..
T Consensus 729 ~p~~I~~dG-~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~-------------------- 787 (1019)
T PRK09853 729 NPESFDADG-TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKAN-------------------- 787 (1019)
T ss_pred ceEEEEcCC-cEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhc--------------------
Confidence 445554322 222210 000000 011334579999999999998764311100
Q ss_pred HHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHH
Q 013561 258 LLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGK 337 (441)
Q Consensus 258 ~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~ 337 (441)
. +++ +.. |+|.||+++|| +.|+|||+|||+ ..|.++..|+.||+
T Consensus 788 --G-----------L~l------------d~~-G~I~VDetlqT-s~pgVFAaGD~a---------~Gp~tvv~Ai~qGr 831 (1019)
T PRK09853 788 --G-----------IPL------------DKK-GWPVVDANGET-SLTNVYMIGDVQ---------RGPSTIVAAIADAR 831 (1019)
T ss_pred --C-----------ccc------------cCC-CCEEeCCCccc-CCCCEEEEeccc---------cCchHHHHHHHHHH
Confidence 0 010 111 78999999999 999999999998 24679999999999
Q ss_pred HHHHHHHHHhc
Q 013561 338 YLAELFNKKIG 348 (441)
Q Consensus 338 ~aA~nI~~~l~ 348 (441)
.||.||...+.
T Consensus 832 ~AA~nI~~~~~ 842 (1019)
T PRK09853 832 RAADAILSREG 842 (1019)
T ss_pred HHHHHHhhhcC
Confidence 99999997663
No 271
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.97 E-value=0.0008 Score=68.35 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~ 145 (441)
..||||||||.|||+||.+|-..| .+|+|+|..++++
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 458999999999999999998655 5899999999886
No 272
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.97 E-value=0.00083 Score=70.92 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 356899999999999999999999999999999863
No 273
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.97 E-value=0.00074 Score=69.25 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+|+|||||.+|+++|.+|++.|++|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999753
No 274
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=96.96 E-value=0.00076 Score=67.91 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+|+|||||.+|+++|..|++.|++|+|+|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 69999999999999999999999999999975
No 275
>PLN02676 polyamine oxidase
Probab=96.95 E-value=0.00089 Score=70.39 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~ 145 (441)
..+|+|||||++||++|..|++.|. +|+|+|++++++
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG 63 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 5689999999999999999999998 699999998764
No 276
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.90 E-value=0.00083 Score=74.53 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=31.6
Q ss_pred cEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~ 144 (441)
+|+||||||||+++|..|++. |++|+|+|+++..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 799999999999999999987 8999999998753
No 277
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.88 E-value=0.0011 Score=69.40 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|||||+|.+|+++|..+++.|.+|+|+|+.+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4589999999999999999999999999999976
No 278
>PRK06996 hypothetical protein; Provisional
Probab=96.86 E-value=0.0012 Score=67.41 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCC----CeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKI----YDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g----~~Vtvie~~~ 142 (441)
..+|+||||||+|+++|..|++.| .+|+|+|+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 468999999999999999999886 4799999974
No 279
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.84 E-value=0.019 Score=64.23 Aligned_cols=21 Identities=24% Similarity=-0.008 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 013561 328 LAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 328 ~a~~A~~qg~~aA~nI~~~l~ 348 (441)
+++.||.+|+.++.+|.++|.
T Consensus 750 tvv~A~as~k~~~~~i~~~l~ 770 (1028)
T PRK06567 750 SVVKALASSKEGYDAINKKLI 770 (1028)
T ss_pred HHHHHHHHHHhHHHHHHHHHh
Confidence 689999999999999998886
No 280
>PLN03000 amine oxidase
Probab=96.84 E-value=0.0012 Score=72.79 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..++|+|||||++|+.+|..|.+.|++|+|+|++++.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 4679999999999999999999999999999997654
No 281
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.82 E-value=0.0063 Score=69.44 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=95.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S 186 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 186 (441)
+++|+|||+|+.|+++|..|.+.|. .|+|+|..+... + .+... +. ..++.++.+ .
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~--~-----------------~l~~~---L~-~~GV~i~~~~~ 373 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS--P-----------------EARAE---AR-ELGIEVLTGHV 373 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh--H-----------------HHHHH---HH-HcCCEEEcCCe
Confidence 6799999999999999999999994 689998775331 0 01111 22 235666654 5
Q ss_pred EEEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561 187 CIGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS 264 (441)
Q Consensus 187 v~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a 264 (441)
++.+..+.+ .|.+.... ++..++++|.|+++.|..|+..-.. . +
T Consensus 374 v~~i~g~~~v~~V~l~~~~-------g~~~~i~~D~V~va~G~~Pnt~L~~--------------------~----l--- 419 (985)
T TIGR01372 374 VAATEGGKRVSGVAVARNG-------GAGQRLEADALAVSGGWTPVVHLFS--------------------Q----R--- 419 (985)
T ss_pred EEEEecCCcEEEEEEEecC-------CceEEEECCEEEEcCCcCchhHHHH--------------------h----c---
Confidence 667765433 24444211 1234789999999999998752100 0 0
Q ss_pred cCCCCceeEeeCceEEEEccCCcccC-CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561 265 ENPGDTVQLFSKYFVITITLSFLVRL-SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF 343 (441)
Q Consensus 265 ~~~G~~~vE~a~~v~V~il~~~~~~l-G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI 343 (441)
|.. +++ +... +++. .| +.|+|||+|||+. +..+..|+.+|+.||.+|
T Consensus 420 ---g~~-~~~------------~~~~~~~~~-----~t-~v~gVyaaGD~~g----------~~~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 420 ---GGK-LAW------------DAAIAAFLP-----GD-AVQGCILAGAANG----------LFGLAAALADGAAAGAAA 467 (985)
T ss_pred ---CCC-eee------------ccccCceec-----CC-CCCCeEEeeccCC----------ccCHHHHHHHHHHHHHHH
Confidence 000 000 0000 1211 14 7899999999982 346778999999999999
Q ss_pred HHHhc
Q 013561 344 NKKIG 348 (441)
Q Consensus 344 ~~~l~ 348 (441)
+..+.
T Consensus 468 ~~~lg 472 (985)
T TIGR01372 468 ARAAG 472 (985)
T ss_pred HHHcC
Confidence 88773
No 282
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.82 E-value=0.0013 Score=72.00 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+|+|||||.+|+++|..|++.|++|+|+|+..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 589999999999999999999999999999975
No 283
>PRK13984 putative oxidoreductase; Provisional
Probab=96.81 E-value=0.0064 Score=65.77 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=99.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCC------CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKI------YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYF 182 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g------~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 182 (441)
+++|+|||||+.|+.+|..|.+.+ .+|+++....... .+ .... ..+.+. . ..++.+
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~--~~-------~~~~----~e~~~~---~--~~GV~i 479 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFE--EM-------PADM----EEIEEG---L--EEGVVI 479 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcc--cC-------CCCH----HHHHHH---H--HcCCEE
Confidence 679999999999999999998764 3788874321110 00 0000 011111 1 135555
Q ss_pred EEE-EEEEEeCCCCEE---EEEec----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHH
Q 013561 183 YLA-SCIGIDTDKHEV---YCETV----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHA 250 (441)
Q Consensus 183 ~~~-~v~~id~~~~~v---~~~~~----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a 250 (441)
+.. .++.+..++..+ .+... +.++. ..++++.++++|.||+|+|..|+...++..
T Consensus 480 ~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~------------- 546 (604)
T PRK13984 480 YPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEE------------- 546 (604)
T ss_pred EeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhh-------------
Confidence 433 233333222221 11110 00000 011234579999999999998875432210
Q ss_pred HHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHH
Q 013561 251 QEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQ 330 (441)
Q Consensus 251 ~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~ 330 (441)
+... +++. . |+|.||+++|| ++|+|||+|||+. .+ .+.
T Consensus 547 ------~~~~-----------l~~~-------------~-G~i~vd~~~~T-s~~gVfAaGD~~~---------~~-~~v 584 (604)
T PRK13984 547 ------LKSK-----------LEFV-------------R-GRILTNEYGQT-SIPWLFAGGDIVH---------GP-DII 584 (604)
T ss_pred ------hccC-----------cccc-------------C-CeEEeCCCCcc-CCCCEEEecCcCC---------ch-HHH
Confidence 0000 0000 1 77999999999 9999999999992 23 457
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 013561 331 VAERQGKYLAELFNKKIG 348 (441)
Q Consensus 331 ~A~~qg~~aA~nI~~~l~ 348 (441)
.|+.+|+.||.+|+++|.
T Consensus 585 ~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 585 HGVADGYWAAEGIDMYLR 602 (604)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 899999999999999985
No 284
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.80 E-value=0.0013 Score=65.77 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|||||||.+|+++|..|.++|++|+|+|++...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 458999999999999999999999999999997644
No 285
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.79 E-value=0.0012 Score=67.86 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+|||||+|.||+.||..+++.|.+|+|+|+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 599999999999999999999999999999876
No 286
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.78 E-value=0.0018 Score=67.60 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~ 142 (441)
..+|+|||||++|+++|.+|++. |.+|+|+|++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 45899999999999999999987 89999999864
No 287
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.75 E-value=0.0014 Score=68.49 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
++|+|||+|.|||.||..+++.|.+|+|+|+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999964
No 288
>PRK07121 hypothetical protein; Validated
Probab=96.73 E-value=0.0024 Score=67.30 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|||||+|.||+.||..+++.|.+|+|+|+.+..
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 348999999999999999999999999999998653
No 289
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.72 E-value=0.0085 Score=63.02 Aligned_cols=48 Identities=25% Similarity=0.291 Sum_probs=41.6
Q ss_pred Ccee-eCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIG-VDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~-Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|. +|+++|| +.|+|||+|||+. .+.++..|+.+|+.||.+|.++|.
T Consensus 431 G~i~~~~~~~~T-s~~gVfAaGD~~~---------g~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 431 GNISAGYDDYST-SIPGVFAAGDCRR---------GQSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred CCEEecCCCceE-CCCCEEEeeccCC---------CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 6674 5678999 9999999999982 356899999999999999999996
No 290
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.70 E-value=0.002 Score=68.15 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|||||+|.||++||..+++.|.+|+|+|+.+..
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~ 96 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA 96 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 458999999999999999999999999999998754
No 291
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.70 E-value=0.0018 Score=69.15 Aligned_cols=34 Identities=9% Similarity=0.256 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||..|+++|..|++.|++|+|||+.+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3589999999999999999999999999999975
No 292
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.70 E-value=0.006 Score=60.57 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
..+|+|||+|.+|.+.|..|++.|-+|+||||+
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 457999999999999999999999999999996
No 293
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.69 E-value=0.0016 Score=67.51 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~ 144 (441)
+|||||+|.||++||..+++.| .+|+|+|+.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 4999999999999999999999 999999998654
No 294
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.65 E-value=0.0017 Score=69.87 Aligned_cols=55 Identities=20% Similarity=0.092 Sum_probs=41.5
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||.+.+| ++|++||+|+|+.- ..|..... .....|+-.|+.+++++.+++.
T Consensus 356 GGi~vd~~~~t-~I~GLyAaGE~~~g--~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 356 GGLWVDYDQMT-NIPGLFAAGECDYS--YHGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred CCeEECCCCCe-ECCCEEECcccccC--CCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 89999999999732 12332121 2456788899999999987764
No 295
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.61 E-value=0.018 Score=62.70 Aligned_cols=166 Identities=19% Similarity=0.145 Sum_probs=105.0
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA- 185 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 185 (441)
.+++|+|||+|..|+.+|..+.+.|. +||++.+++...... ..+ .+... +..++.|+..
T Consensus 450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~----------~~~----e~~~a-----~~eGv~~~~~~ 510 (639)
T PRK12809 450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG----------SRK----EVVNA-----REEGVEFQFNV 510 (639)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC----------CHH----HHHHH-----HHcCCeEEecc
Confidence 47899999999999999998888885 799998876442110 000 11111 1235665544
Q ss_pred EEEEEeCC-CCEEE---E---EecC--CCCC----CCCCCcceeeCCEEEEcCCCCcCCCCC-CCcccccccccCHhHHH
Q 013561 186 SCIGIDTD-KHEVY---C---ETVN--NGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGI-KGVKENAYFLREVNHAQ 251 (441)
Q Consensus 186 ~v~~id~~-~~~v~---~---~~~~--~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~i-pG~~~~~~~l~~~~~a~ 251 (441)
.+++|..+ ++.|. + .... .+++ ...++++.+++|.||+|+|..|+...+ ...
T Consensus 511 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~-------------- 576 (639)
T PRK12809 511 QPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGS-------------- 576 (639)
T ss_pred CCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccccccc--------------
Confidence 34555321 22222 1 1100 0110 112445689999999999988864321 110
Q ss_pred HHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC----CcccCCCCCEEEecccccccccCCCCCCCc
Q 013561 252 EIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE----WLRAPSVEDVFALGDCAGFLEQTGKPVLPA 327 (441)
Q Consensus 252 ~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~----~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~ 327 (441)
++++ +.. |.|.||+ ++|| +.|+|||+|||+. .+.
T Consensus 577 -------------------gl~~------------~~~-G~i~vd~~~~~~~~T-s~~gVfA~GD~~~---------g~~ 614 (639)
T PRK12809 577 -------------------GIKL------------DKW-GLIQTGDVGYLPTQT-HLKKVFAGGDAVH---------GAD 614 (639)
T ss_pred -------------------Cccc------------CCC-CCEEeCCCcccCccc-CCCCEEEcCCCCC---------Cch
Confidence 0010 011 6788875 4889 9999999999982 357
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 013561 328 LAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 328 ~a~~A~~qg~~aA~nI~~~l~ 348 (441)
++..|+.+|+.||.+|+.+|.
T Consensus 615 ~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 615 LVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999986
No 296
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.60 E-value=0.0084 Score=68.38 Aligned_cols=167 Identities=17% Similarity=0.137 Sum_probs=103.3
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA- 185 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 185 (441)
.+++|+|||||..|+.+|..+.+.|.+ |+++.++...... . ....++.. +..++.++..
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~-------------a-~~~e~~~a-----~eeGI~~~~~~ 630 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAP-------------A-RIEEIRHA-----KEEGIDFFFLH 630 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCC-------------C-CHHHHHHH-----HhCCCEEEecC
Confidence 478999999999999999999998874 8888765432100 0 00011111 1235555433
Q ss_pred EEEEEeC-CCCE---EEEEec-----CCCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHH
Q 013561 186 SCIGIDT-DKHE---VYCETV-----NNGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI 253 (441)
Q Consensus 186 ~v~~id~-~~~~---v~~~~~-----~~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~ 253 (441)
.++++.. +++. +.+... +.+++ ...+++.++++|.||+|+|..|+..-+... .
T Consensus 631 ~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~-------------- 695 (1006)
T PRK12775 631 SPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST-P-------------- 695 (1006)
T ss_pred CcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-C--------------
Confidence 3344422 1222 222210 01010 012334579999999999998875321110 0
Q ss_pred HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-----CcccCCCCCEEEecccccccccCCCCCCCch
Q 013561 254 RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-----WLRAPSVEDVFALGDCAGFLEQTGKPVLPAL 328 (441)
Q Consensus 254 ~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-----~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~ 328 (441)
++++ +.. |.|.||+ +++| ++|+|||+|||+ ..+.+
T Consensus 696 -----------------gl~l------------~~~-G~I~vd~~~v~~~~~T-s~pgVFAaGDv~---------~G~~~ 735 (1006)
T PRK12775 696 -----------------GLAL------------NKW-GNIAADDGKLESTQST-NLPGVFAGGDIV---------TGGAT 735 (1006)
T ss_pred -----------------Cccc------------CCC-CcEEeCCCccccCcCC-CCCCEEEecCcC---------CCccH
Confidence 0000 001 6677775 7888 999999999998 23679
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 013561 329 AQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 329 a~~A~~qg~~aA~nI~~~l~ 348 (441)
++.|+.+|+.||.+|.++|.
T Consensus 736 vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 736 VILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999996
No 297
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.57 E-value=0.0029 Score=64.75 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccC-CC-eEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK-IY-DAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~-g~-~Vtvie~~~ 142 (441)
..+|+|||||.+|+++|..|++. |. +|+|+|+..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 56899999999999999999985 85 999999974
No 298
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.52 E-value=0.0027 Score=68.88 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||..|+++|..|++.|++|+|||+.+
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 4689999999999999999999999999999975
No 299
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.49 E-value=0.0036 Score=62.69 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=28.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~ 144 (441)
.++|+|||||-.+.+.+..|.+.+ .+|+++-|+..+
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 679999999999999999998755 589999997644
No 300
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.40 E-value=0.0038 Score=60.62 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=34.0
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
.+++|||+|.+|+.+|..+++.|++|.|+|++++++
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 479999999999999999999999999999999987
No 301
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.40 E-value=0.0039 Score=67.01 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|||||+|.+|+++|..+++.|.+|+|+|+.+..
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~ 44 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 458999999999999999999999999999998653
No 302
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.39 E-value=0.0042 Score=64.41 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=34.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
..+|+|||+|.+|+.+|..|++.|.+|.++|++++.+
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG 40 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG 40 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence 4689999999999999999999999999999999775
No 303
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.38 E-value=0.0038 Score=60.88 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCcc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMV 145 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~ 145 (441)
+++|||||++|..+|.+|++.+ .+|.|+|+.++..
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 6899999999999999999987 7999999987554
No 304
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.32 E-value=0.0035 Score=66.41 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|||||+| +|+++|..+++.|.+|+|+|+.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 3489999999 999999999999999999998764
No 305
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=96.29 E-value=0.0037 Score=65.65 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~ 142 (441)
+|+|||||.+|+++|..|++. |.+|+|+|+.+
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 699999999999999999986 89999999964
No 306
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.27 E-value=0.0037 Score=67.07 Aligned_cols=56 Identities=23% Similarity=0.188 Sum_probs=41.7
Q ss_pred CceeeCCCcc----cCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLR----APSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lq----t~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||...| | ++|+.||+|+|+.. ...|.... -.....|+-.|++|++++.+++.
T Consensus 343 GGi~id~~~~v~~~t-~I~GLyAaGe~a~~-g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 343 GGIPTDYTGRVICET-IVKGLFAAGECACV-SVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred CCeEECcCcccccCc-ccCCeeeccccccc-CcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 7 89999999999731 01222111 13567788999999999987764
No 307
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.26 E-value=0.0053 Score=50.29 Aligned_cols=34 Identities=29% Similarity=0.219 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+++|+|||||..|..-+..|.+.|.+||||.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 6799999999999999999999999999997763
No 308
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.23 E-value=0.0046 Score=65.05 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~ 143 (441)
..+|+|||||..|+++|..|++ .|.+|+|+|+.+.
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 4589999999999999999987 4789999999753
No 309
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.23 E-value=0.0052 Score=65.50 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+|||+|.|||.||..+++.|.+|+|+|+.+.
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 35899999999999999999999999999999764
No 310
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.22 E-value=0.005 Score=61.89 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~~~ 145 (441)
+++|||+|||.+||.+|++|++.+. +|||+|..++.+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 6799999999999999999998764 567799999876
No 311
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.21 E-value=0.006 Score=61.01 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
||.|||+||.||..|.-|+..||+|+.+|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 79999999999999999999999999999876
No 312
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.20 E-value=0.006 Score=65.26 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=62.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE-
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC- 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v- 187 (441)
.++-+|||||--|+++|..|...|.+|+|++-.+... .-.++.. ....+++. + +..++.|+.+..
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM---------erQLD~~-ag~lL~~~---l-e~~Gi~~~l~~~t 210 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM---------ERQLDRT-AGRLLRRK---L-EDLGIKVLLEKNT 210 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH---------HHhhhhH-HHHHHHHH---H-Hhhcceeecccch
Confidence 5678999999999999999999999999997766432 1122211 11122222 1 234666655432
Q ss_pred EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
+.|-.+.+...+...+ + ..+++|.||.|+|-+|+.-
T Consensus 211 ~ei~g~~~~~~vr~~D-G--------~~i~ad~VV~a~GIrPn~e 246 (793)
T COG1251 211 EEIVGEDKVEGVRFAD-G--------TEIPADLVVMAVGIRPNDE 246 (793)
T ss_pred hhhhcCcceeeEeecC-C--------CcccceeEEEecccccccH
Confidence 2222222222222221 1 3789999999999999763
No 313
>PLN02976 amine oxidase
Probab=96.18 E-value=0.0052 Score=70.66 Aligned_cols=36 Identities=11% Similarity=0.374 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
.++|+|||+|++|+.+|..|.+.|++|+|||+++.+
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 578999999999999999999999999999997654
No 314
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.15 E-value=0.0052 Score=66.54 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+|||||.||+.||..+++.|.+|+|+|+...
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 45899999999999999999999999999999754
No 315
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.14 E-value=0.0047 Score=66.59 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||.|||.||..+++.|.+|+|+|+..
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 3489999999999999999999999999999964
No 316
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.0055 Score=62.31 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
..+|||||||.||.++|...++.|.+.+++..+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 568999999999999999999999999998765
No 317
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.13 E-value=0.0061 Score=66.26 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+|||||.|||.||..+++.|.+|+|+|+...
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 45899999999999999999999999999998543
No 318
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.13 E-value=0.0058 Score=65.29 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||+|.|||.||..+++.|.+|+|+|+.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999987
No 319
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.13 E-value=0.0046 Score=61.90 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHhhcc------CCCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT------KIYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~------~g~~Vtvie~~~~~~ 145 (441)
-.+|+|||||||||++|.+|.+ ...+|.|+|+....+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G 118 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG 118 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC
Confidence 4589999999999999998854 457999999987654
No 320
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.13 E-value=0.0043 Score=64.66 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=27.3
Q ss_pred cEEEECCCHHHHHHHHhhccCC---CeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKI---YDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g---~~Vtvie~~~~~ 144 (441)
+|+|||||+||..+|..|++.+ ++|||||..+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 6999999999999999999876 899999998644
No 321
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.12 E-value=0.0058 Score=62.59 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCc
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHM 144 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~ 144 (441)
+..+|+|||||..|+++|..|++.+ ++|+|+|+.+.+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~ 40 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV 40 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence 3568999999999999999999987 999999998754
No 322
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.12 E-value=0.0048 Score=66.96 Aligned_cols=55 Identities=24% Similarity=0.189 Sum_probs=40.4
Q ss_pred CceeeCCCcc-cCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLR-APSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lq-t~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||.+.+ | ++|++||+|+|+.- ..|..... .....|+-.|+.|++++..++.
T Consensus 392 GGi~vd~~~~~t-~IpGLYAaGE~agg--~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~ 448 (626)
T PRK07803 392 GGVEVDPDTGAA-TVPGLFAAGECAGG--MHGSNRLGGNSLSDLLVFGRRAGLGAADYVR 448 (626)
T ss_pred CCEEEcCCCCee-ecCCeeEccccccc--cCcCccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 9999998864 6 89999999998732 12332222 3456788899999999887764
No 323
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.07 E-value=0.0054 Score=66.32 Aligned_cols=49 Identities=22% Similarity=0.141 Sum_probs=41.0
Q ss_pred ceeeC-------------CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561 292 QIGVD-------------EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 292 ~I~Vd-------------~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
.|.|| ++++| ++|++||+|||+.. + ...++..+..+|++++.++..++.
T Consensus 371 Gi~vd~~~~~~~~~~~~~~~~~T-~v~glyA~Ge~~~~----~---~~~l~~~s~~~g~~ag~~~~~~~~ 432 (608)
T PRK06854 371 GYWVSGPEDWVPEEYKWGYNRMT-TVEGLFAAGDVVGG----S---PHKFSSGSFAEGRIAAKAAVRYIL 432 (608)
T ss_pred EEEecCccccccccccccccccc-CCCCEEEeeecCCC----C---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 39999 99999 99999999999731 1 235788889999999999998875
No 324
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.022 Score=55.88 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=105.0
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S 186 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 186 (441)
++|+|+|||||-.|+++|..|+-.-..|||+|-.+.+- .+ ..+.+. +...+++.++.+ .
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk--------------AD---~VLq~k---l~sl~Nv~ii~na~ 412 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK--------------AD---AVLQDK---LRSLPNVTIITNAQ 412 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh--------------hH---HHHHHH---HhcCCCcEEEecce
Confidence 47999999999999999999997656799998665332 11 112222 344456766554 4
Q ss_pred EEEEeCCCCEE---EEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccc
Q 013561 187 CIGIDTDKHEV---YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLML 263 (441)
Q Consensus 187 v~~id~~~~~v---~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~ 263 (441)
-+.|.-+.+.| ...+..+ +++..+.-+-+++-.|--||+.=++|.
T Consensus 413 Ttei~Gdg~kV~Gl~Y~dr~s------ge~~~l~LeGvFVqIGL~PNT~WLkg~-------------------------- 460 (520)
T COG3634 413 TTEVKGDGDKVTGLEYRDRVS------GEEHHLELEGVFVQIGLLPNTEWLKGA-------------------------- 460 (520)
T ss_pred eeEEecCCceecceEEEeccC------CceeEEEeeeeEEEEecccChhHhhch--------------------------
Confidence 44554443333 3333322 345577788899999988887544432
Q ss_pred ccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561 264 SENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF 343 (441)
Q Consensus 264 a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI 343 (441)
||+... |.|.||....| |.|+|||+|||...+ -+....||.+|..++-+-
T Consensus 461 --------vel~~r-------------GEIivD~~g~T-svpGvFAAGD~T~~~--------yKQIIIamG~GA~AaL~A 510 (520)
T COG3634 461 --------VELNRR-------------GEIIVDARGET-NVPGVFAAGDCTTVP--------YKQIIIAMGEGAKASLSA 510 (520)
T ss_pred --------hhcCcC-------------ccEEEecCCCc-CCCceeecCcccCCc--------cceEEEEecCcchhhhhh
Confidence 111111 78999999999 999999999999654 356667777777777655
Q ss_pred HHHh
Q 013561 344 NKKI 347 (441)
Q Consensus 344 ~~~l 347 (441)
..+|
T Consensus 511 FDyL 514 (520)
T COG3634 511 FDYL 514 (520)
T ss_pred hhhh
Confidence 5444
No 325
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.04 E-value=0.0067 Score=62.45 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||+|.+|+.+|..|++.|.+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4589999999999999999999999999999864
No 326
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.03 E-value=0.0057 Score=65.61 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=41.6
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||.+.||+++|++||+|+|+..- ..|.... -.....|+-.|+.|++++.+++.
T Consensus 347 GGi~vd~~~~t~~IpGLyAaGE~a~~g-~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 347 GGIDVDIDGRNPDIVGLFSAGEAACVS-VHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred CCeEECCCCCcCCcCCeEecccccccC-CCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999984499999999997410 1232111 12456788999999999987764
No 327
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.99 E-value=0.0066 Score=64.95 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|||||+|++|+++|..+++.|.+|+|||+.+..
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 347999999999999999999999999999997643
No 328
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.99 E-value=0.0061 Score=65.78 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||.||+.||..+++.|.+|+|+|+..
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 3479999999999999999999999999999964
No 329
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.99 E-value=0.0086 Score=64.43 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|||||+|.||++||..+++.|.+|+|+|+.+..
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 358999999999999999999999999999998754
No 330
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.96 E-value=0.0053 Score=66.30 Aligned_cols=54 Identities=20% Similarity=0.168 Sum_probs=40.3
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHh
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l 347 (441)
|.|.+|.+.+| ++|++||+|+|+.- ..|..... .....+.-.|+.+|+++..++
T Consensus 371 gG~~~d~~~~t-~i~gL~a~Ge~~~~--~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 371 GGLWVDYDQMT-NIPGLFAAGECDFS--QHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CCeeECCCCcc-cCCCEEECcccccC--cCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999732 12322211 344567788999999987765
No 331
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.94 E-value=0.008 Score=63.23 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccC-C-CeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK-I-YDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~-g-~~Vtvie~~~~ 143 (441)
..+|||||||..|+++|..|++. + .+|+|+|+.+.
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 46999999999999999999985 3 69999999864
No 332
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=95.92 E-value=0.0069 Score=65.73 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||.||+.||..+++.|.+|+|+|+..
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 3479999999999999999999999999999975
No 333
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.92 E-value=0.0075 Score=64.56 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+|||+|.+|+++|..+++.|.+|+|||+.+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 34799999999999999999999999999999754
No 334
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=95.92 E-value=0.0074 Score=65.09 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=35.6
Q ss_pred CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561 297 EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 297 ~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
...+| ++|++||+|||+.. | ...++..+..+|.+++.++..++.
T Consensus 400 ~~~~T-~i~gLyA~Ge~~~~----~---~h~l~~nsl~eg~~ag~~a~~~~~ 443 (614)
T TIGR02061 400 YNRMT-TVEGLFTCGDGVGA----S---PHKFSSGSFTEGRIAAKAAVRWIL 443 (614)
T ss_pred cCCcc-ccCCEEeceecccC----c---chhhHHhHHHHHHHHHHHHHHHHH
Confidence 78889 99999999999732 1 124778888999999999988774
No 335
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.91 E-value=0.011 Score=52.40 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISP 140 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~ 140 (441)
++++|+|||||..|..-+..|.+.|++|+||++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 378999999999999999999999999999954
No 336
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.91 E-value=0.011 Score=59.13 Aligned_cols=100 Identities=11% Similarity=0.142 Sum_probs=61.4
Q ss_pred CCcEEEECCCHHHHHHHHhhcc----CCCeEE-EEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT----KIYDAV-CISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY 183 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~----~g~~Vt-vie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 183 (441)
+++|-|||+|+.|-++|..|.+ .|.+|. ||+.+-.+. -.||+.... ..+.. .+..++.++
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~--kiLPeyls~--------wt~ek-----ir~~GV~V~ 411 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME--KILPEYLSQ--------WTIEK-----IRKGGVDVR 411 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh--hhhHHHHHH--------HHHHH-----HHhcCceec
Confidence 5789999999999998888864 567775 444332111 122222211 11111 123566665
Q ss_pred EE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561 184 LA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF 232 (441)
Q Consensus 184 ~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~ 232 (441)
-. .|.++....+.+.++-.++ .++..|.||+|+|..||..
T Consensus 412 pna~v~sv~~~~~nl~lkL~dG---------~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 412 PNAKVESVRKCCKNLVLKLSDG---------SELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred cchhhhhhhhhccceEEEecCC---------CeeeeeeEEEEecCCCchh
Confidence 43 5666655555555544321 4889999999999999876
No 337
>PRK12839 hypothetical protein; Provisional
Probab=95.90 E-value=0.0097 Score=63.86 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|+|||+|.+|+++|..+++.|.+|+|||+.+.+
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 458999999999999999999999999999997643
No 338
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.89 E-value=0.0073 Score=65.04 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+|+|||||.|||.||..+++.|.+|+|+|+..
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~ 40 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVF 40 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 479999999999999999999999999999974
No 339
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=95.88 E-value=0.01 Score=62.37 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~ 143 (441)
..+|||||||.+|+++|..|++. +.+|+|+|+.+.
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~ 42 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDS 42 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCC
Confidence 45899999999999999999987 899999999433
No 340
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=95.88 E-value=0.012 Score=63.32 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|+|||+|.+|+.+|..+++.|.+|+|||+.+..
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 458999999999999999999999999999997643
No 341
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.87 E-value=0.033 Score=54.20 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
.|||||+|-|||+++..+-..|-.|+++|++..+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence 5999999999999999998777779999997554
No 342
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.84 E-value=0.05 Score=58.34 Aligned_cols=166 Identities=19% Similarity=0.196 Sum_probs=105.4
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA- 185 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 185 (441)
..++|+|||+|..|+.+|..+.+.+ .+|+|+.+.+...+. . ....+... . ..++.++..
T Consensus 266 ~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~-----------~---~~~~~~~a----~-~~GVki~~~~ 326 (564)
T PRK12771 266 LGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMP-----------A---HDEEIEEA----L-REGVEINWLR 326 (564)
T ss_pred CCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCC-----------C---CHHHHHHH----H-HcCCEEEecC
Confidence 3789999999999999999888877 679999876532110 0 00111111 1 235555543
Q ss_pred EEEEEeCCC-CE-----EEEEec--CCCCC--CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHH
Q 013561 186 SCIGIDTDK-HE-----VYCETV--NNGKL--SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRK 255 (441)
Q Consensus 186 ~v~~id~~~-~~-----v~~~~~--~~~~~--~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~ 255 (441)
.+..|..++ +. +.+... +.++. ...+++.++++|.||+|+|..|+...+.+..
T Consensus 327 ~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~----------------- 389 (564)
T PRK12771 327 TPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVP----------------- 389 (564)
T ss_pred CcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhcc-----------------
Confidence 455664432 21 111111 01110 0124456899999999999887543221100
Q ss_pred HHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHHH
Q 013561 256 KLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAER 334 (441)
Q Consensus 256 ~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~ 334 (441)
.+ + +.. |+|.||+ +++| ++|+|||+|||+. .|.+++.|++
T Consensus 390 ----gl-----------~-------------~~~-G~i~vd~~~~~t-s~~~Vfa~GD~~~---------g~~~v~~Av~ 430 (564)
T PRK12771 390 ----GV-----------E-------------VGR-GVVQVDPNFMMT-GRPGVFAGGDMVP---------GPRTVTTAIG 430 (564)
T ss_pred ----Cc-----------c-------------cCC-CCEEeCCCCccC-CCCCEEeccCcCC---------CchHHHHHHH
Confidence 00 0 001 7899998 6777 9999999999982 3679999999
Q ss_pred HHHHHHHHHHHHhc
Q 013561 335 QGKYLAELFNKKIG 348 (441)
Q Consensus 335 qg~~aA~nI~~~l~ 348 (441)
||+.+|.+|.++|.
T Consensus 431 ~G~~aA~~i~~~L~ 444 (564)
T PRK12771 431 HGKKAARNIDAFLG 444 (564)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999996
No 343
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.82 E-value=0.0099 Score=61.59 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=40.0
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCC-CCchHHHHHHHHHHHHHHHHHHh
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPV-LPALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~-~p~~a~~A~~qg~~aA~nI~~~l 347 (441)
|.|.||...|| +.|+.||+|.|+.- ...|... .-.....++--|+.||+++...+
T Consensus 332 GGi~vd~~~~t-~i~gLYAaGE~a~~-g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 332 GGIKVDLNSKT-SMKNLYAFGEVSCT-GVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred CCEEECCCccc-cCCCeEeccccccc-CCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 99999999999631 0123211 11245677888999999987655
No 344
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.81 E-value=0.013 Score=62.95 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|+|||+|.+|+.+|..+++.|.+|+|+|+.+..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 347999999999999999999999999999997643
No 345
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.81 E-value=0.0076 Score=64.82 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=41.0
Q ss_pred CceeeCCCcccCC------CCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPS------VEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~------~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||.+.|| . +|+.||+|+|+..- ..|..... .....|+-.|++|++++.+++.
T Consensus 353 GGi~vd~~~~t-~~~~g~~I~GLyAaGE~a~~g-~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~ 415 (577)
T PRK06069 353 GGIHTDVYGRV-LTADGEWVRGLWAAGEAAAVS-VHGANRLGSNSTAECLVWGRIAGEQAAEYAL 415 (577)
T ss_pred CCceECCCCcC-cCCCCCEeCCeEecccccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 6 89999999997410 12321111 2356788899999999887764
No 346
>PRK08275 putative oxidoreductase; Provisional
Probab=95.80 E-value=0.0084 Score=64.15 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=40.0
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||++++| ++|++||+|||+.. + ......|+-.|+.++.++..++.
T Consensus 357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~----~----~~~~~~~~~~G~~a~~~~~~~~~ 405 (554)
T PRK08275 357 SGVWVNEKAET-TVPGLYAAGDMASV----P----HNYMLGAFTYGWFAGENAAEYVA 405 (554)
T ss_pred CcEEECCCCcc-CCCCEEECcccCCc----h----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999 99999999999732 1 13456688899999999887764
No 347
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.79 E-value=0.0082 Score=65.44 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=41.2
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||.+.||.++|++||+|+|+.. ...|.... -.....|+-.|+++++++..++.
T Consensus 373 GGi~vd~~~~t~~I~GLyAaGE~a~~-g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~ 430 (657)
T PRK08626 373 GGIRTNPTGESYGLKGLFSAGEAACW-DMHGFNRLGGNSLAETVVAGMIVGKYVADFCL 430 (657)
T ss_pred CCceECCCCCCcccCCEEeccccccc-CCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999459999999999742 11232111 12346777899999999987764
No 348
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.79 E-value=0.0088 Score=64.29 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=40.8
Q ss_pred CceeeCCCcccC-----CCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAP-----SVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~-----~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||.+.||. ++|++||+|+|+... ..|.... -.....|+-.|+.|++++..++.
T Consensus 352 GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g-~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 414 (575)
T PRK05945 352 GGIPVNTDGRVRRSADGLVEGFFAAGECACVS-VHGANRLGSNSLLECVVYGRRTGAAIAEYVQ 414 (575)
T ss_pred CCeeECCCceeccCCCCccCCeEeeecccccc-ccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 899999998873 589999999997310 1122111 13456788899999999987663
No 349
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.79 E-value=0.013 Score=54.28 Aligned_cols=34 Identities=21% Similarity=0.025 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+++|+|||||..|...+..|.+.|.+|||++++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 6799999999999999999999999999998753
No 350
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.73 E-value=0.011 Score=62.68 Aligned_cols=55 Identities=20% Similarity=0.118 Sum_probs=39.1
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHh
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l 347 (441)
|.|.||.+.|| ++|++||+|+|+.. ...|..... .....|.-.|+.|++++....
T Consensus 333 GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 333 GGVKTNLDGET-SIPGLYAIGEVACT-GVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred CCEEECCCCcc-cCCCeEEccccccc-ccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 88999999999 99999999999731 012321111 245667778889998887543
No 351
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=95.73 E-value=0.011 Score=62.75 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=32.6
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
+|+|||+||+|+.+|..|++.|++|.+||+.....
T Consensus 2 dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 2 DVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred cEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 69999999999999999999999999999987654
No 352
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.72 E-value=0.011 Score=52.21 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
||+|||||..|.++|..|+..|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999998875
No 353
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.66 E-value=0.01 Score=62.50 Aligned_cols=55 Identities=24% Similarity=0.223 Sum_probs=39.8
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHh
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l 347 (441)
|.|.||.+.|| ++|++||+|+|+.. ...|.... -.....|.-.|+.+++++.+..
T Consensus 334 GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 334 GGISVDDHGRT-TVPGLYAIGEVACT-GLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred CCEEECCCCcc-cCCCEEECcccccc-ccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999 99999999999631 01232111 1244677888999999987654
No 354
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.64 E-value=0.01 Score=63.26 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=41.0
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||++.|| .+|++||+|+|+.-. .|.... -.....|+-.|++|++++.+++.
T Consensus 349 GGi~vd~~~~t-~IpGLyAaGE~~gg~--hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~ 404 (543)
T PRK06263 349 GGIRINEDCET-NIPGLFACGEVAGGV--HGANRLGGNALADTQVFGAIAGKSAAKNAE 404 (543)
T ss_pred CCEEECCCCcc-cCCCeEeccccccCC--CCCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 88999999999 999999999986311 122111 12345788999999999987764
No 355
>PRK02106 choline dehydrogenase; Validated
Probab=95.61 E-value=0.014 Score=62.47 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHhhcc-CCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT-KIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~-~g~~Vtvie~~~~ 143 (441)
..+++|||||.+|+.+|.+|++ .|++|.|+|+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 3589999999999999999999 7999999999864
No 356
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.57 E-value=0.016 Score=62.01 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+|||+|.||+.||..+++ |.+|+|+|+.+.
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~ 42 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTL 42 (553)
T ss_pred cCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCC
Confidence 3489999999999999999864 899999999764
No 357
>PLN02815 L-aspartate oxidase
Probab=95.50 E-value=0.013 Score=63.21 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=39.6
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHh
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l 347 (441)
|.|.||.+.|| ++|++||+|+|+.. ...|.... -.....|+-.|+.|++++...+
T Consensus 378 GGi~vD~~~~t-~IpGLyAaGE~a~~-G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 378 GGVRTGLQGET-NVQGLYAAGEVACT-GLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred CCeeECCCCce-ecCCEEeccccccc-CCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 99999999999731 01232111 1245677778899998887554
No 358
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.50 E-value=0.016 Score=62.11 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|||||+| +|++||...++.|.+|+|+|+.+.+
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~ 50 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV 50 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4589999999 8999999999999999999998654
No 359
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.05 Score=50.38 Aligned_cols=158 Identities=19% Similarity=0.130 Sum_probs=104.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE-
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC- 187 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v- 187 (441)
.|-++|||||-+.++=|..|.+.+.+|.++-|++++.-. ....+. ..+.++++++...+
T Consensus 157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs-----------------~~Mq~r---a~~npnI~v~~nt~~ 216 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS-----------------KIMQQR---AEKNPNIEVLYNTVA 216 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH-----------------HHHHHH---HhcCCCeEEEechhh
Confidence 567999999999999999999999999999999876511 011111 22345566554432
Q ss_pred EEEeCC---CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561 188 IGIDTD---KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS 264 (441)
Q Consensus 188 ~~id~~---~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a 264 (441)
++.--+ -..+.+++.. .+++.+++.+-|+.|+|-.|++.-+.|-
T Consensus 217 ~ea~gd~~~l~~l~ikn~~------tge~~dl~v~GlFf~IGH~Pat~~l~gq--------------------------- 263 (322)
T KOG0404|consen 217 VEALGDGKLLNGLRIKNVK------TGEETDLPVSGLFFAIGHSPATKFLKGQ--------------------------- 263 (322)
T ss_pred hhhccCcccccceEEEecc------cCcccccccceeEEEecCCchhhHhcCc---------------------------
Confidence 222111 1234455532 2455688999999999998876544442
Q ss_pred cCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561 265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF 343 (441)
Q Consensus 265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI 343 (441)
||+-. . |+|+|-+ +-.| |+|++||+||+..- .-..++.|...|.++|-.-
T Consensus 264 -------ve~d~------------~-GYi~t~pgts~T-svpG~FAAGDVqD~--------kyRQAvTaAgsGciaaldA 314 (322)
T KOG0404|consen 264 -------VELDE------------D-GYIVTRPGTSLT-SVPGVFAAGDVQDK--------KYRQAVTAAGSGCIAALDA 314 (322)
T ss_pred -------eeecc------------C-ceEEeccCcccc-cccceeeccccchH--------HHHHHHhhhccchhhhhhH
Confidence 22211 1 7888774 5566 99999999999832 2357788888888887666
Q ss_pred HHHhc
Q 013561 344 NKKIG 348 (441)
Q Consensus 344 ~~~l~ 348 (441)
..+|.
T Consensus 315 e~yL~ 319 (322)
T KOG0404|consen 315 ERYLT 319 (322)
T ss_pred HHHhh
Confidence 65553
No 360
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.35 E-value=0.024 Score=51.76 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=29.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.++|+|||+|..++.+|..|.+.|.+|+++-|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 6899999999999999999999999999998876
No 361
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.34 E-value=0.043 Score=58.27 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
.+|||+|||+|..|...|.+|++...+|++.-|+...
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~w 218 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAW 218 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccc
Confidence 4789999999999999999999988889988877543
No 362
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.29 E-value=0.023 Score=52.50 Aligned_cols=34 Identities=32% Similarity=0.265 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
+.++|+|||||-.|...|..|.+.|++||||++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3679999999999999999999999999999753
No 363
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=95.24 E-value=0.016 Score=62.36 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=41.8
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||.+.|| ++|++||+|||+... ..|.... -.....|+-.|++|++++..++.
T Consensus 359 GGi~vd~~~~t-~i~GLyAaGe~~~~g-~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 359 GGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred CCEEECCCCcc-ccCCEEecccccccc-cCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999 999999999997421 1232111 12456788899999999987764
No 364
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=95.19 E-value=0.016 Score=62.24 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=41.4
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||.+.|| ++|++||+|+|+.. ...|..... .....|+-.|+.|++++..++.
T Consensus 358 GGi~~d~~~~t-~i~GLyAaGe~a~~-G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~ 414 (580)
T TIGR01176 358 GGIETDINCET-RIKGLFAVGECASV-GLHGANRLGSNSLAELVVFGRRAGEAAAERAA 414 (580)
T ss_pred CCeeECcCccc-ccCCeEeeeccccc-CcCCCccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 88999999999 99999999999742 112321111 2456788899999999987653
No 365
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.18 E-value=0.018 Score=65.19 Aligned_cols=49 Identities=24% Similarity=0.184 Sum_probs=40.4
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|+|.||.+++| ++||+||+|||+... ......|+-.|+.++.++..++.
T Consensus 362 GGi~vd~~~~T-~v~GLfAaGE~a~~~--------~nsl~~a~v~G~~Ag~~a~~~~~ 410 (897)
T PRK13800 362 SGVWVDEHART-TVPGLYAAGDLACVP--------HNYMIGAFVFGDLAGAHAAGTLA 410 (897)
T ss_pred ceEEecCCCcc-cCCCeEechhccCcc--------hhhhhhHHHhHHHHHHHHHHHHh
Confidence 78999999999 999999999998421 23555688899999999987764
No 366
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.17 E-value=0.022 Score=66.11 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
..+|||||+|.||+.||..++..|.+|+|+|+.+..
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 468999999999999999999999999999998654
No 367
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.15 E-value=0.023 Score=59.64 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
...+|+|||||..|+-+|..++.+|++|+|+|+.+..
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A 47 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA 47 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc
Confidence 3568999999999999999999999999999998754
No 368
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.11 E-value=0.018 Score=52.49 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=27.7
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+||.|||.|+.|+..|..|+..|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 3799999999999999999999999999999874
No 369
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=95.09 E-value=0.024 Score=55.35 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||||-||++|+..|.+.|.++.+|....
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4589999999999999999999999999998865
No 370
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.07 E-value=0.022 Score=61.27 Aligned_cols=57 Identities=16% Similarity=0.066 Sum_probs=40.4
Q ss_pred CceeeCCCccc-----CCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRA-----PSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt-----~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||.+.|+ +++|++||+|+|+... ..|.... -.....|+-.|+.|++++.+++.
T Consensus 357 GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g-~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 419 (583)
T PRK08205 357 GGIPTTVDGEVLRDNTTVVPGLYAAGECACVS-VHGANRLGTNSLLDINVFGRRAGIAAAEYAR 419 (583)
T ss_pred CCeeECCCceEecCCCCCcCCeeeccccccCC-CCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 89999999885 3799999999997410 1232111 12456678899999999987763
No 371
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.06 E-value=0.026 Score=58.62 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+.++|+|+|+|.+|+++|..|++.|++|+++|+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 36799999999999999999999999999999875
No 372
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.99 E-value=0.023 Score=51.48 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
+|.|||+|..|...|..++..|++|+++|.++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence 6999999999999999999999999999998643
No 373
>PRK09077 L-aspartate oxidase; Provisional
Probab=94.95 E-value=0.022 Score=60.74 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=40.6
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHh
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l 347 (441)
|.|.||.+.|| ++|++||+|+|+.. ...|.... -.....|+-.|+.|++++.+.+
T Consensus 354 GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 354 GGVMVDLHGRT-DLDGLYAIGEVSYT-GLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred CCeeECCCCcc-ccCCEEeccccccc-ccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 89999999999 99999999999731 01232111 1345678889999999998664
No 374
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.94 E-value=0.091 Score=52.85 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=36.0
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCccccc
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMVFTP 148 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~~~~ 148 (441)
+...+++.||-||.-|+.|..|...+ .++..+|+.+.+.|.|
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHp 45 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHP 45 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCC
Confidence 34678999999999999999998754 7899999999887764
No 375
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=94.93 E-value=0.026 Score=60.11 Aligned_cols=33 Identities=6% Similarity=0.249 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~ 143 (441)
+++|||||.||+.+|.+|++.+ ++|.|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 4899999999999999999987 79999999864
No 376
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.92 E-value=0.026 Score=57.76 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+|+|||+|++|+.+|..+.+.|.+|+|+|+..
T Consensus 2 Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 2 DVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 69999999999999999999999999999875
No 377
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=94.86 E-value=0.028 Score=59.92 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+|||||.|||.||..++..|.+|+|+|+...
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 45899999999999999999999999999999653
No 378
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.77 E-value=0.03 Score=52.70 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
++++|||+|-.|.+.|+.|.+.|++|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999886
No 379
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.76 E-value=0.024 Score=55.35 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
...|-|||||-||-++|.++++.|+.|.++|.++
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 4579999999999999999999999999999875
No 380
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.74 E-value=0.031 Score=58.30 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=31.6
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
||+|||.|++|+++|+.|.+.|++|+++|+++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6999999999999999999999999999988654
No 381
>PRK07512 L-aspartate oxidase; Provisional
Probab=94.73 E-value=0.028 Score=59.51 Aligned_cols=56 Identities=23% Similarity=0.114 Sum_probs=40.3
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|.|.||.+.|| ++|++||+|+|+.. ...|.... -.....|+-.|+.+++++.....
T Consensus 342 GGi~vd~~~~t-~I~GLyAaGE~a~~-G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~ 398 (513)
T PRK07512 342 GGIAVDADGRS-SLPGLWAAGEVAST-GLHGANRLASNSLLEAVVFAARAAEDIAGTPA 398 (513)
T ss_pred CCEEECCCCcc-ccCCEEeccccccc-CCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 99999999999731 01232111 12455677889999999986653
No 382
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.69 E-value=0.044 Score=59.30 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~ 143 (441)
.+|+|||||.|||.||..+++. |.+|+|||+.+.
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 4799999999999999999987 999999999763
No 383
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=94.65 E-value=0.015 Score=55.74 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCC------CeEEEEcCCC
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKI------YDAVCISPRN 142 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g------~~Vtvie~~~ 142 (441)
.+.++|+|||||..|+.+|.+|.+.+ +.||+||...
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 44689999999999999999998765 8999999864
No 384
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.61 E-value=0.044 Score=54.33 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.++|+|||+|..|...|..++..|++|+++|+.+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998763
No 385
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=94.58 E-value=0.046 Score=58.34 Aligned_cols=34 Identities=9% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..++||||+|.+|..+|.+|+..|++|.|+|+..
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 5689999999999999999999999999999985
No 386
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.51 E-value=0.16 Score=53.45 Aligned_cols=49 Identities=4% Similarity=0.003 Sum_probs=42.3
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG 348 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~ 348 (441)
|+|.+|+.++| +.|+|||+|||.. |. ..+...++.+|+.+|.+|.+++.
T Consensus 374 G~V~~d~~~~T-~ipGvyAaGDi~~-----Gp---~gvI~t~~~dA~~ta~~i~~d~~ 422 (491)
T PLN02852 374 GRVLSSASGAD-TEPGLYVVGWLKR-----GP---TGIIGTNLTCAEETVASIAEDLE 422 (491)
T ss_pred ceEEeCCCCcc-CCCCEEEeeeEec-----CC---CCeeeecHhhHHHHHHHHHHHHH
Confidence 88999988888 9999999999992 31 23778899999999999999986
No 387
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.31 E-value=0.044 Score=56.47 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.++|.|||.|+.|+.+|..|++.|++|+++|.++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998764
No 388
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.31 E-value=0.056 Score=48.36 Aligned_cols=34 Identities=21% Similarity=0.078 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+.+|+|+|+|.+|..|+..|...|++|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 5699999999999999999999999999998764
No 389
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.24 E-value=0.029 Score=58.01 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=28.4
Q ss_pred EECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 114 VLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 114 IIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
|||+|.+|+.||..+++.|.+|+|+|+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999874
No 390
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.22 E-value=0.054 Score=52.88 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
.++|.|||+|..|...|..++..|++|+++|+++..
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 458999999999999999999999999999998743
No 391
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.21 E-value=0.053 Score=52.98 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.++|+|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998763
No 392
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.02 E-value=0.075 Score=45.71 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~ 142 (441)
.++++|||+|-+|-.++..|...|.+ |+|+.|+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 67999999999999999999999987 99998764
No 393
>PRK08275 putative oxidoreductase; Provisional
Probab=93.93 E-value=0.078 Score=56.78 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~ 143 (441)
.+|+|||||.||+.||..+++. |.+|+|+|+.+.
T Consensus 10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4899999999999999999875 689999999864
No 394
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.90 E-value=0.076 Score=52.49 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+|+|||+|-.|...|..|++.|++|+++.+++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4589999999999999999999999999998764
No 395
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.90 E-value=0.068 Score=52.15 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.++|+|||+|..|...|..|++.|++|+++|+++.
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 35899999999999999999999999999998763
No 396
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.71 E-value=0.064 Score=52.92 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
++|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999998863
No 397
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.70 E-value=0.068 Score=51.94 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.++|.|||+|..|...|..|++.|++|+++|.++.
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 45899999999999999999999999999998763
No 398
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.60 E-value=0.066 Score=52.25 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
++|+|||+|..|...|..|++.|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4799999999999999999999999999998864
No 399
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.51 E-value=0.11 Score=48.74 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
++++|+|||||..+..=+..|.+.|.+||||.+.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3679999999999999999999999999999665
No 400
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.40 E-value=0.092 Score=51.38 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.++|.|||+|..|...|..|...|++|+++|+++.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 46899999999999999999999999999998763
No 401
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.39 E-value=0.089 Score=51.42 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
-++|.|||+|..|...|..|+..|++|+++|+++.
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 36899999999999999999999999999998764
No 402
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.23 E-value=0.11 Score=45.15 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 112 VVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 112 VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
|+|+|+|..|...|..|.+.|++|+++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998765
No 403
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.20 E-value=0.11 Score=59.02 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+|+|||||.|||.||..+++.|.+|+|+|+..
T Consensus 14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~ 46 (897)
T PRK13800 14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH 46 (897)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 479999999999999999999999999999976
No 404
>PRK04148 hypothetical protein; Provisional
Probab=93.13 E-value=0.071 Score=45.71 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
++++++||.| .|.++|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 4689999999 888889999999999999998875
No 405
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.11 E-value=0.11 Score=53.16 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+++|+|+|.|+.|+.+|..++..|.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 37899999999999999999999999999998765
No 406
>PLN02785 Protein HOTHEAD
Probab=93.11 E-value=0.1 Score=56.14 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+++|||||.||+.+|.+|++ +++|.|+|+.+.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 5789999999999999999998 589999999864
No 407
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=92.98 E-value=0.16 Score=54.62 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~ 142 (441)
.+|+|||||.|||.||..+++. |.+|+|+|+..
T Consensus 5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~ 39 (582)
T PRK09231 5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY 39 (582)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 4799999999999999999875 57999999975
No 408
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.95 E-value=0.12 Score=50.90 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.++|.|||+|..|...|..|.+.|++|+++++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999999999999865
No 409
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.88 E-value=0.11 Score=51.71 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.||+|||+|..|...|..|.+.|++|+++++.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 479999999999999999999999999998753
No 410
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.76 E-value=0.12 Score=52.36 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+.+|+|||+|.+|+.+|..+...|.+|++++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 5689999999999999999999999999998764
No 411
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.76 E-value=0.1 Score=50.73 Aligned_cols=34 Identities=24% Similarity=0.061 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+-+|+|||||.+|..+|+.+...|.+||++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4589999999999999999999999999999874
No 412
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.74 E-value=0.12 Score=54.50 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+.+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6799999999999999999999999999998876
No 413
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=92.73 E-value=0.17 Score=48.22 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+.+++|+|+|+.+..+|..+...|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 45899999999999999999999999999998875
No 414
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.59 E-value=0.1 Score=44.98 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 112 VVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 112 VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
++|+|+|+.+.++++.++..|++|+|+|+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 68999999999999999999999999999875
No 415
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.55 E-value=0.13 Score=50.16 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+|+|||+|..|...|..|.+.|++|+++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999998854
No 416
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.53 E-value=0.77 Score=47.16 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=70.2
Q ss_pred CCEEEEEE-EEEEEeCCCCEEEE-EecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCC--CCCCcccccccccC--HhHH
Q 013561 178 PNSYFYLA-SCIGIDTDKHEVYC-ETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTF--GIKGVKENAYFLRE--VNHA 250 (441)
Q Consensus 178 ~~v~~~~~-~v~~id~~~~~v~~-~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~--~ipG~~~~~~~l~~--~~~a 250 (441)
.++.++.+ +|.+++.+.+.+.. .... +.+.++.+|.+|||+|+. ..-. ...++.|-++.+.- ..+-
T Consensus 276 ~Gg~il~g~~V~~i~~~~~~v~~V~t~~-------g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r 348 (419)
T TIGR03378 276 LGGVMLPGDRVLRAEFEGNRVTRIHTRN-------HRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDR 348 (419)
T ss_pred CCCEEEECcEEEEEEeeCCeEEEEEecC-------CccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcch
Confidence 46566666 89998877776553 2111 112378999999999987 4322 23333344443321 1111
Q ss_pred HHH-HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCccc----CCCCCEEEecccccccccCCCCCC
Q 013561 251 QEI-RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRA----PSVEDVFALGDCAGFLEQTGKPVL 325 (441)
Q Consensus 251 ~~~-~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt----~~~~~VfA~GD~a~~~~~~G~~~~ 325 (441)
..- ...+ +..-+-..=.|.||+.||. +-++|+||+|-+-.-.|+--+
T Consensus 349 ~~W~~~~f-------------------------f~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~--- 400 (419)
T TIGR03378 349 DQWYQHRF-------------------------FAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE--- 400 (419)
T ss_pred hhhcchhh-------------------------cCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc---
Confidence 000 0000 0000000023789999884 128999999988754442100
Q ss_pred CchHHHHHHHHHHHHHHH
Q 013561 326 PALAQVAERQGKYLAELF 343 (441)
Q Consensus 326 p~~a~~A~~qg~~aA~nI 343 (441)
-.-.-+|+..|-.||++|
T Consensus 401 gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 401 GCGSGVAVSTALHAAEQI 418 (419)
T ss_pred CCCchhHHHHHHHHHHhh
Confidence 011227788888888876
No 417
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=92.49 E-value=0.12 Score=50.79 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
...|+|||+|.-|+++|.+|++.|.++.++|+.+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence 4579999999999999999999999999999865
No 418
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.46 E-value=0.2 Score=44.90 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=30.0
Q ss_pred CCcEEEECCCH-HHHHHHHhhccCCCeEEEEcCC
Q 013561 109 KPRVVVLGTGW-GACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~-aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
+++|+|||+|- +|..+|..|.+.|.+|+++++.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 68999999995 7999999999999999999875
No 419
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.42 E-value=0.22 Score=45.97 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+++|+|+|.|-.|..+|+.|.+.|++|+++|.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 36799999999999999999999999999987653
No 420
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=92.38 E-value=0.18 Score=49.53 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
...|+|||+|.|||-+|.+|+..|.+|.++|.+..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 45799999999999999999999999999998753
No 421
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.22 E-value=0.16 Score=50.00 Aligned_cols=33 Identities=12% Similarity=-0.025 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.||+|||+|..|...|..|.+.|++|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999998864
No 422
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.20 E-value=0.18 Score=51.48 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+++|+|+|.|+.|..+|..+...|.+|+++|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 47899999999999999999999999999998765
No 423
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.08 E-value=0.22 Score=50.47 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=32.3
Q ss_pred CCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 107 GEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 107 ~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
..+++|+|.|| |+.|..++..|.+.|++|+.+++..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 34789999998 9999999999999999999998754
No 424
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.97 E-value=0.16 Score=49.67 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISP 140 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~ 140 (441)
||+|||+|..|...|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999987
No 425
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.90 E-value=0.19 Score=49.29 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+++|+|||.|.+|..++..|.+.|.+|+++++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 36899999999999999999999999999998874
No 426
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.89 E-value=0.18 Score=43.12 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~ 142 (441)
.+||+|+|+|-.|.++|..|++.|. +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3589999999999999999999987 799999864
No 427
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.87 E-value=0.22 Score=49.06 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+++|.|||+|-.|...|..|.+.|++|++++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4589999999999999999999999999999875
No 428
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.80 E-value=0.18 Score=44.69 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=28.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+|+++|+|=|..|-.+|+.|+..|.+|+|.|.++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 7899999999999999999999999999999876
No 429
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.77 E-value=0.15 Score=52.38 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+|.|||.|+.|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998763
No 430
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.77 E-value=0.2 Score=49.00 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+++|+|||.|.+|..+|..|...|.+|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36899999999999999999999999999999875
No 431
>PRK07804 L-aspartate oxidase; Provisional
Probab=91.77 E-value=0.25 Score=52.77 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=36.6
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHh
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKI 347 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l 347 (441)
|.|.||+++|| ++|++||+|||+.. ...|.... -.....+.-.|+.+++++.+..
T Consensus 358 GGi~vd~~~~t-~i~GLyAaGe~~~~-g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~ 413 (541)
T PRK07804 358 GGVVTDVYGRT-SVPGLYAAGEVACT-GVHGANRLASNSLLEGLVVGERAGAAAAAHA 413 (541)
T ss_pred CCEEECCCCcc-cCCCeEEccccccc-ccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999 99999999999631 01122111 1123445667777777776554
No 432
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.70 E-value=0.2 Score=52.25 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.++|+|+|.|..|+++|..|.+.|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 5689999999999999999999999999999875
No 433
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.68 E-value=0.24 Score=49.29 Aligned_cols=33 Identities=24% Similarity=0.099 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+|.|||+|..|...|..|.+.|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999998864
No 434
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.66 E-value=1.2 Score=45.05 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=63.2
Q ss_pred CCcEEEECCCHHHHHHHHhhcc----CCCeEEEEcCCCCcc-----------cccchhhhhcCC-------------CCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT----KIYDAVCISPRNHMV-----------FTPLLASTCVGT-------------LEF 160 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~----~g~~Vtvie~~~~~~-----------~~~ll~~~~~g~-------------~~~ 160 (441)
+..|.|||||=.+.++-..|.. ..+++.-|.|+..+. |.|......++. +.+
T Consensus 187 ~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~Y 266 (436)
T COG3486 187 KRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLY 266 (436)
T ss_pred CceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccc
Confidence 3459999999999988877753 345677788876431 112111111111 111
Q ss_pred ccccc-chhhhhhhh------cCCCCEEEEEE-EEEEEeCCCCE-EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561 161 RSVAE-PVSRIQTSL------SSDPNSYFYLA-SCIGIDTDKHE-VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT 231 (441)
Q Consensus 161 ~~~~~-~~~~~~~~~------~~~~~v~~~~~-~v~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~ 231 (441)
+.+.. .++++...+ ...+.+....+ ++..+..+.+. +.+.... ...++.+++++|.||+|||-+...
T Consensus 267 kgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~----~~~~~~~t~~~D~vIlATGY~~~~ 342 (436)
T COG3486 267 KGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRH----HETGELETVETDAVILATGYRRAV 342 (436)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEee----ccCCCceEEEeeEEEEecccccCC
Confidence 11111 112221111 11234444443 67777776643 4443321 112455688999999999987554
Q ss_pred C
Q 013561 232 F 232 (441)
Q Consensus 232 ~ 232 (441)
|
T Consensus 343 P 343 (436)
T COG3486 343 P 343 (436)
T ss_pred c
Confidence 4
No 435
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=91.65 E-value=0.19 Score=49.62 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+|.|||+|..|...|..|.+.|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 379999999999999999999999999998865
No 436
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.64 E-value=0.24 Score=45.72 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~ 141 (441)
.++|+|||+|-.|...|..|++.|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5689999999999999999999998 69999987
No 437
>PRK08071 L-aspartate oxidase; Provisional
Probab=91.29 E-value=0.33 Score=51.45 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+|||+|.||+.||..+++ |.+|+|+|+.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 3489999999999999999976 899999999764
No 438
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.24 E-value=0.35 Score=51.66 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+|+|||+|.||+.||..+ +.|.+|+|+|+.+
T Consensus 8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~ 39 (543)
T PRK06263 8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL 39 (543)
T ss_pred cCEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence 4899999999999999999 8899999999975
No 439
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.21 E-value=0.27 Score=50.59 Aligned_cols=35 Identities=14% Similarity=-0.041 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+++|+|+|.|+.|..+|..|...|.+|+++|.++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 47899999999999999999999999999998765
No 440
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=91.18 E-value=0.18 Score=49.65 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHhhcc----CCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT----KIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~----~g~~Vtvie~~~~~ 144 (441)
.-.|+|||||-.|.+.|..|.+ .|.+|+|+|+++.+
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 4579999999999999988853 57999999998854
No 441
>PRK09077 L-aspartate oxidase; Provisional
Probab=91.17 E-value=0.35 Score=51.54 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.+|+|||+|.||+.||..+++. .+|+|+|+...
T Consensus 9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~ 41 (536)
T PRK09077 9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL 41 (536)
T ss_pred CCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence 4799999999999999999876 89999999753
No 442
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.15 E-value=0.27 Score=50.99 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+++|+|+|+|.+|+++|+.|++.|++|++.|.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 5789999999999999999999999999998754
No 443
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.13 E-value=0.32 Score=45.19 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
++++|+|||||-.|..=|+.|.+.|.+|+|+.++-
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 37799999999999999999999999999997654
No 444
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.10 E-value=0.25 Score=40.81 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=27.8
Q ss_pred EEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 112 VVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 112 VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
|+|+|.|..|...+..|.+.+.+|+++|.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7899999999999999999777999999876
No 445
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=91.08 E-value=0.28 Score=53.05 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHhhc----cCCCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGID----TKIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~----~~g~~Vtvie~~~ 142 (441)
+|+|||||.|||.||..++ +.|.+|+|+|+..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 4899999999999999998 6799999999965
No 446
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=90.97 E-value=0.39 Score=51.73 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~ 143 (441)
.+|+|||||.|||.||..+++. |.+|+|+|+...
T Consensus 4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 3799999999999999999875 579999999753
No 447
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.86 E-value=0.28 Score=49.70 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~ 142 (441)
+++|+|||+|-.|..+|..|++.+ .+|++.+|+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 358999999999999999999987 9999999984
No 448
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.82 E-value=0.34 Score=44.16 Aligned_cols=33 Identities=21% Similarity=0.071 Sum_probs=30.0
Q ss_pred CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCC
Q 013561 109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
.++++|+|| |..|..++..|.+.|++|+++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 568999997 999999999999999999999765
No 449
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.81 E-value=0.28 Score=43.47 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+++|.+||-|-.|...|..|.+.|++|+++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 3589999999999999999999999999998764
No 450
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=90.79 E-value=0.2 Score=48.41 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHhhcc-------CCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT-------KIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~-------~g~~Vtvie~~~ 142 (441)
+.+|+|||+|.+|++.|..+.+ .-.+|+|++.+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 5689999999999999966654 236899997764
No 451
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.77 E-value=0.3 Score=48.87 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~ 142 (441)
.++|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999998 899999864
No 452
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.77 E-value=0.31 Score=50.61 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.++|+|+|.|.+|+++|+.|++.|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 56899999999999999999999999999987653
No 453
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=90.70 E-value=0.44 Score=50.19 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+|+|||+|.|||.||..+++.|. |+|+|+.+
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 379999999999999999999987 99999985
No 454
>PLN02494 adenosylhomocysteinase
Probab=90.62 E-value=0.33 Score=50.37 Aligned_cols=35 Identities=9% Similarity=-0.052 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+++|+|+|.|+.|..+|..+...|.+|+++|.++
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899999999999999999999999999998875
No 455
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=90.50 E-value=0.2 Score=51.02 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
..+++|||+|.-||.+|..|++.|.+|.|+|+....+
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~g 50 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIG 50 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecC
Confidence 5689999999999999999999999999999985443
No 456
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.47 E-value=0.3 Score=51.45 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
+++|+|+|.|..|++++..|...|++|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 578999999999999999999999999999965
No 457
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.40 E-value=0.32 Score=51.35 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
++|.|||+|..|...|..|.+.|++|+++|+++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998753
No 458
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.32 E-value=0.36 Score=47.07 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~ 142 (441)
.++|+|||+|-+|.++|..|...|. +|+|+++..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 5799999999999999999999887 799998864
No 459
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.22 E-value=0.39 Score=44.28 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~ 142 (441)
..+|+|||.|-.|.++|..|++.|. +++++|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 5689999999999999999999997 899999863
No 460
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.18 E-value=0.45 Score=42.91 Aligned_cols=37 Identities=8% Similarity=-0.008 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
-.+++|.|||.|-+|.++|+.|...|.+|+.+++...
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 3478999999999999999999999999999998764
No 461
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.18 E-value=0.35 Score=47.73 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKI--YDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~ 142 (441)
||.|||+|..|.++|..|...| .+|+++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999888 5899999875
No 462
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.90 E-value=0.42 Score=47.13 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~ 142 (441)
+||.|||+|..|...|..|+..|+ +|+++|..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 379999999999999999998776 899999854
No 463
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.85 E-value=0.4 Score=47.25 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~ 142 (441)
+||+|||+|.+|.++|..|...| ++|+++|++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 37999999999999999999888 6899999875
No 464
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=89.84 E-value=0.52 Score=50.56 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+|+|||||.||+.||..+++.|.+|+|+|+.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 499999999999999999999999999999753
No 465
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=89.75 E-value=0.43 Score=49.62 Aligned_cols=35 Identities=17% Similarity=-0.029 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+++|+|||.|..|..+|..|...|.+|+++|+.+
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp 287 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDP 287 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899999999999999999999999999998765
No 466
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.74 E-value=0.36 Score=50.78 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+.+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5699999999999999999999999999998876
No 467
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.71 E-value=0.37 Score=50.43 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~ 143 (441)
+|+|||.|+.|+.+|..|+.. |++|+.+|.++.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 799999999999999999987 588999998764
No 468
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.67 E-value=0.45 Score=45.92 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~ 142 (441)
..+|+|||.|-.|.++|..|++.| -++||+|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 468999999999999999999999 5899999864
No 469
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=89.65 E-value=0.29 Score=49.36 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=25.0
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 119 WGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 119 ~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
.|||+||.+|++.|++|||+|++++++
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~G 27 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVG 27 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 489999999999999999999998875
No 470
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.62 E-value=0.47 Score=40.94 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~ 142 (441)
+|+|||.|-.|.++|..|.+.|. +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 59999999999999999999997 799998864
No 471
>PRK08401 L-aspartate oxidase; Provisional
Probab=89.60 E-value=0.55 Score=49.13 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=38.8
Q ss_pred CceeeCCCcccCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHH
Q 013561 291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKK 346 (441)
Q Consensus 291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~ 346 (441)
|.|.||.+.|| ++|++||+|+|+.. ...|..... .....|+-.|+.+++++.+.
T Consensus 311 GGi~vd~~~~t-~IpGLyAaGE~a~~-G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 311 GGISVDTFYRT-GIKNLYAIGEAASN-GFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CCEEECCCCcc-cCCCEEECcccccc-CCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999 99999999999731 012321111 23456778899999998743
No 472
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.58 E-value=0.38 Score=47.72 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+|.|||+|..|...|..|++.|++|++++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999864
No 473
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.57 E-value=0.45 Score=46.81 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~ 143 (441)
+||+|||+|..|...|..++..|+ +|+++|.++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 589999999999999999988765 9999998653
No 474
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.56 E-value=0.39 Score=50.30 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+++|+|+|.|-.|.++|+.|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 5789999999999999999999999999999654
No 475
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.54 E-value=0.32 Score=49.63 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+|.|||.|+.|+..|..++. ||+|+++|.++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988875 899999999864
No 476
>PRK08017 oxidoreductase; Provisional
Probab=89.53 E-value=0.43 Score=45.00 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=30.3
Q ss_pred CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.++|+|.|+ |..|.++|+.|.+.|++|+++.++.
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357999998 9999999999999999999997764
No 477
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=89.53 E-value=0.68 Score=48.15 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=35.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV 145 (441)
Q Consensus 106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~ 145 (441)
.-.+|||+|||+|.+|...|-.|.+.|.+||++=+++.+.
T Consensus 172 ~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 172 DLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred ccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 3458999999999999999999999999999998887554
No 478
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=89.48 E-value=0.45 Score=47.63 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=31.0
Q ss_pred CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+++|+|.|| |+.|-.++.+|.+.|++|+.+++..
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 578999997 9999999999999999999998754
No 479
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.46 E-value=0.57 Score=46.51 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~ 143 (441)
.+||+|||+|..|..+|..++..|+ +|+|+|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4689999999999999999988885 8999998764
No 480
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.45 E-value=0.67 Score=49.79 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.+|+|||||.||+.||..+++.|.+|+|+|+.+
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~ 38 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVF 38 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 489999999999999999999999999999974
No 481
>PRK07512 L-aspartate oxidase; Provisional
Probab=89.43 E-value=0.54 Score=49.86 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
..+|+|||+|.||+.||..++ +.+|+|+|+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 358999999999999999997 469999999864
No 482
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=89.40 E-value=0.28 Score=47.90 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMV 145 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~ 145 (441)
..++||||||..|++.|++|.- .+.+|.|+|++..+.
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 6689999999999999999864 488999999987553
No 483
>PRK06849 hypothetical protein; Provisional
Probab=89.38 E-value=0.47 Score=48.34 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=32.3
Q ss_pred CCCcEEEECCCH-HHHHHHHhhccCCCeEEEEcCCCC
Q 013561 108 EKPRVVVLGTGW-GACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 108 ~~k~VvIIGgG~-aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
++++|+|+|++. .|+..|+.|.+.|++|++++..+.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 478999999986 799999999999999999988763
No 484
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.31 E-value=0.42 Score=49.58 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.+++++|+|+|..|..+|..|.+.|++|++||+++.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 367899999999999999999999999999998763
No 485
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.20 E-value=0.46 Score=50.29 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
-++|.|||+|.-|...|..|++.|++|+++|+++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~ 42 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA 42 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 468999999999999999999999999999988743
No 486
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.18 E-value=0.48 Score=47.40 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~ 142 (441)
..+|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4689999999999999999999998 899999863
No 487
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.12 E-value=0.78 Score=35.93 Aligned_cols=32 Identities=25% Similarity=0.126 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISP 140 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~ 140 (441)
.++++|+|.|-.|..++..|... +.+|+++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 67899999999999999999887 678999988
No 488
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.98 E-value=0.6 Score=40.56 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~ 142 (441)
.++|+|||+|..|...+..|.+.| ++|++++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 578999999999999999999885 7899998764
No 489
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.94 E-value=0.56 Score=43.90 Aligned_cols=36 Identities=8% Similarity=-0.056 Sum_probs=31.3
Q ss_pred CCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 107 GEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 107 ~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
.++++|+|.|| |..|..++..|.+.|++|+++.++.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34678999994 8999999999999999999998764
No 490
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.94 E-value=0.67 Score=45.88 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~ 142 (441)
++||+|||+|..|.++|..|...+. ++.|+|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 5699999999999999999988776 899999865
No 491
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=88.93 E-value=0.72 Score=50.44 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
.+|+|||||.|||.||..+++.|.+|+|+|+.+.
T Consensus 6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred ccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4799999999999999999999999999998653
No 492
>PRK06057 short chain dehydrogenase; Provisional
Probab=88.93 E-value=0.53 Score=44.56 Aligned_cols=35 Identities=9% Similarity=-0.105 Sum_probs=31.2
Q ss_pred CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
++++|+|+|| |..|.+++++|.+.|++|++++++.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3679999998 8999999999999999999997754
No 493
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.92 E-value=0.4 Score=50.65 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM 144 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~ 144 (441)
-++|.|||+|.-|...|..+++.|++|+++|+++..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 457999999999999999999999999999998643
No 494
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.92 E-value=0.5 Score=44.08 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=29.2
Q ss_pred cEEEEC-CCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 111 RVVVLG-TGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIG-gG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
||.||| +|..|.++|..|.+.|++|+++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 79999999999999999999998765
No 495
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.80 E-value=0.46 Score=49.60 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHH-HHHhhccCCCeEEEEcCCC
Q 013561 108 EKPRVVVLGTGWGACR-FLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 108 ~~k~VvIIGgG~aGl~-aA~~L~~~g~~Vtvie~~~ 142 (441)
..++|.|||.|-+|++ +|+.|.+.|++|++.|.++
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 3578999999999999 6999999999999999765
No 496
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.79 E-value=0.41 Score=49.61 Aligned_cols=32 Identities=13% Similarity=0.345 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 79999999999999999999999999999865
No 497
>PRK05993 short chain dehydrogenase; Provisional
Probab=88.77 E-value=0.61 Score=44.86 Aligned_cols=34 Identities=6% Similarity=0.150 Sum_probs=30.6
Q ss_pred CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+++|+|.|| |..|.++|+.|.+.|++|+++.++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~ 38 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKE 38 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 568999998 8999999999999999999998764
No 498
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.69 E-value=0.6 Score=48.72 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=29.4
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR 141 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~ 141 (441)
.++|+|+|.|-.|.++|+.|.+ |++|+++|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 6789999999999999999995 9999999954
No 499
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=88.67 E-value=0.42 Score=49.44 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH 143 (441)
Q Consensus 109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~ 143 (441)
+++|+|+|-|-.|+++|+.|.+.|++|+++|.++.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCC
Confidence 67999999999999999999999999999997763
No 500
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=88.53 E-value=0.64 Score=43.22 Aligned_cols=34 Identities=9% Similarity=-0.042 Sum_probs=30.6
Q ss_pred CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561 109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN 142 (441)
Q Consensus 109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~ 142 (441)
+++|+|.|+ |..|..+++.|.+.|++|+++.+++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 568999996 8999999999999999999998764
Done!