Query 013562
Match_columns 441
No_of_seqs 180 out of 1447
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00430 glucose-6-phosphate i 100.0 4E-117 9E-122 935.7 37.6 416 9-425 133-552 (552)
2 PLN02649 glucose-6-phosphate i 100.0 3E-116 6E-121 932.0 38.0 416 12-427 140-556 (560)
3 KOG2446 Glucose-6-phosphate is 100.0 3E-116 7E-121 878.2 23.9 401 12-427 143-545 (546)
4 PRK00179 pgi glucose-6-phospha 100.0 6E-113 1E-117 905.7 36.4 400 12-427 138-547 (548)
5 PRK14095 pgi glucose-6-phospha 100.0 6E-111 1E-115 885.0 34.3 388 9-424 142-532 (533)
6 PF00342 PGI: Phosphoglucose i 100.0 7E-111 1E-115 883.8 25.4 393 12-420 89-486 (486)
7 PRK14096 pgi glucose-6-phospha 100.0 4.7E-98 1E-102 786.2 32.5 352 12-397 107-463 (528)
8 PRK14097 pgi glucose-6-phospha 100.0 1.3E-92 2.9E-97 738.6 31.8 351 19-397 73-433 (448)
9 COG0166 Pgi Glucose-6-phosphat 100.0 1.9E-92 4.1E-97 732.5 31.6 367 18-417 78-446 (446)
10 PRK00973 glucose-6-phosphate i 100.0 2.6E-92 5.7E-97 734.2 31.4 351 18-398 70-429 (446)
11 PRK03868 glucose-6-phosphate i 100.0 5.7E-89 1.2E-93 704.8 28.4 347 18-397 57-408 (410)
12 PRK09533 bifunctional transald 100.0 2.6E-63 5.7E-68 550.3 32.9 315 16-401 452-772 (948)
13 cd05016 SIS_PGI_2 Phosphogluco 100.0 5.6E-51 1.2E-55 373.2 12.9 161 209-395 1-164 (164)
14 PRK08674 bifunctional phosphog 100.0 5.1E-35 1.1E-39 296.7 24.1 288 17-392 32-335 (337)
15 cd05015 SIS_PGI_1 Phosphogluco 100.0 7E-32 1.5E-36 246.0 14.9 140 17-162 18-158 (158)
16 cd05798 SIS_TAL_PGI SIS_TAL_PG 100.0 7.4E-31 1.6E-35 230.1 7.2 125 212-395 3-129 (129)
17 TIGR02128 G6PI_arch bifunction 99.7 7.1E-15 1.5E-19 147.8 25.4 279 19-391 21-306 (308)
18 cd05017 SIS_PGI_PMI_1 The memb 99.3 1.3E-11 2.7E-16 107.2 10.6 108 21-155 1-111 (119)
19 PRK11382 frlB fructoselysine-6 98.2 2.6E-05 5.6E-10 79.8 13.4 101 17-141 42-144 (340)
20 cd05710 SIS_1 A subgroup of th 98.1 2E-05 4.4E-10 68.4 10.3 113 21-161 1-115 (120)
21 cd05008 SIS_GlmS_GlmD_1 SIS (S 98.1 1.7E-05 3.7E-10 68.6 8.8 88 21-129 1-90 (126)
22 COG2222 AgaS Predicted phospho 98.1 1.2E-05 2.7E-10 82.1 8.6 91 19-129 39-131 (340)
23 TIGR02815 agaS_fam putative su 98.0 1.4E-05 3.1E-10 82.7 8.5 99 16-131 39-140 (372)
24 cd05014 SIS_Kpsf KpsF-like pro 97.9 5.4E-05 1.2E-09 65.6 8.6 88 21-129 2-91 (128)
25 COG0794 GutQ Predicted sugar p 97.8 0.00011 2.5E-09 69.6 10.1 97 21-142 41-139 (202)
26 PRK13938 phosphoheptose isomer 97.7 0.00026 5.7E-09 67.1 10.5 108 20-143 46-167 (196)
27 TIGR00441 gmhA phosphoheptose 97.7 0.00027 5.9E-09 64.1 10.0 112 19-147 11-137 (154)
28 cd04795 SIS SIS domain. SIS (S 97.7 0.00028 6E-09 56.6 9.0 80 22-121 1-81 (87)
29 cd05006 SIS_GmhA Phosphoheptos 97.7 0.00034 7.3E-09 64.6 10.6 113 19-148 33-160 (177)
30 PRK00331 glucosamine--fructose 97.7 0.00068 1.5E-08 74.5 14.4 94 17-131 287-382 (604)
31 PF01380 SIS: SIS domain SIS d 97.7 0.00032 6.9E-09 60.6 9.5 104 19-146 5-110 (131)
32 cd05005 SIS_PHI Hexulose-6-pho 97.6 0.00045 9.8E-09 63.9 10.9 93 20-142 34-128 (179)
33 TIGR03127 RuMP_HxlB 6-phospho 97.6 0.00048 1E-08 63.6 10.6 94 19-142 30-125 (179)
34 TIGR01135 glmS glucosamine--fr 97.6 0.00057 1.2E-08 75.1 12.6 93 17-130 289-383 (607)
35 PRK11543 gutQ D-arabinose 5-ph 97.4 0.00065 1.4E-08 68.4 8.8 92 20-132 43-136 (321)
36 PRK11557 putative DNA-binding 97.4 0.0012 2.7E-08 65.1 10.6 90 19-129 128-219 (278)
37 cd05013 SIS_RpiR RpiR-like pro 97.3 0.002 4.3E-08 55.6 10.3 99 20-143 14-114 (139)
38 PRK00414 gmhA phosphoheptose i 97.3 0.0014 3E-08 61.9 9.9 105 20-142 45-164 (192)
39 PRK15482 transcriptional regul 97.3 0.0014 3E-08 65.2 10.3 99 19-142 135-235 (285)
40 PRK10886 DnaA initiator-associ 97.3 0.0019 4E-08 61.3 10.2 109 20-143 42-166 (196)
41 PRK13937 phosphoheptose isomer 97.3 0.0015 3.3E-08 61.2 9.4 97 19-128 38-149 (188)
42 PTZ00295 glucosamine-fructose- 97.2 0.00068 1.5E-08 75.1 7.6 94 17-132 320-416 (640)
43 PRK11337 DNA-binding transcrip 97.2 0.0057 1.2E-07 60.9 13.5 100 19-143 140-241 (292)
44 PTZ00394 glucosamine-fructose- 97.2 0.0012 2.5E-08 73.6 9.4 93 18-131 353-447 (670)
45 COG1737 RpiR Transcriptional r 97.2 0.0014 2.9E-08 65.4 8.8 90 19-129 130-221 (281)
46 PLN02981 glucosamine:fructose- 97.2 0.00096 2.1E-08 74.4 8.5 93 17-130 361-455 (680)
47 TIGR00393 kpsF KpsF/GutQ famil 97.1 0.0028 6.1E-08 62.0 9.6 87 21-128 2-90 (268)
48 PRK13936 phosphoheptose isomer 96.9 0.0068 1.5E-07 57.3 10.1 92 20-124 44-148 (197)
49 PRK10892 D-arabinose 5-phospha 96.9 0.005 1.1E-07 62.3 9.5 89 20-129 48-138 (326)
50 PRK11302 DNA-binding transcrip 96.8 0.0075 1.6E-07 59.5 9.6 83 20-123 129-211 (284)
51 PRK14101 bifunctional glucokin 96.2 0.022 4.9E-07 63.1 9.8 89 19-128 468-557 (638)
52 COG0449 GlmS Glucosamine 6-pho 96.0 0.023 4.9E-07 62.0 8.5 93 17-132 281-377 (597)
53 cd05009 SIS_GlmS_GlmD_2 SIS (S 96.0 0.022 4.7E-07 50.5 6.9 88 18-125 12-100 (153)
54 cd05007 SIS_Etherase N-acetylm 95.7 0.069 1.5E-06 52.7 9.7 44 76-129 117-162 (257)
55 PRK12570 N-acetylmuramic acid- 95.5 0.082 1.8E-06 53.3 9.8 43 76-128 126-170 (296)
56 PRK05441 murQ N-acetylmuramic 95.4 0.094 2E-06 52.9 9.7 44 76-129 130-175 (299)
57 PRK02947 hypothetical protein; 95.2 0.066 1.4E-06 52.4 7.6 39 76-124 105-143 (246)
58 TIGR00274 N-acetylmuramic acid 94.6 0.18 4E-06 50.7 9.1 44 76-129 125-170 (291)
59 PF13580 SIS_2: SIS domain; PD 92.9 0.36 7.8E-06 42.8 7.1 89 20-122 36-138 (138)
60 KOG1268 Glucosamine 6-phosphat 91.1 0.49 1.1E-05 50.8 6.4 141 18-183 354-507 (670)
61 COG0279 GmhA Phosphoheptose is 90.2 2.8 6E-05 38.9 9.7 111 20-147 42-167 (176)
62 PTZ00295 glucosamine-fructose- 80.5 5.8 0.00013 44.2 8.2 103 18-142 495-599 (640)
63 COG1434 Uncharacterized conser 70.3 41 0.0009 31.5 10.1 57 69-133 113-175 (223)
64 PRK10494 hypothetical protein; 69.2 25 0.00054 34.8 8.5 66 65-144 140-211 (259)
65 PRK10834 vancomycin high tempe 67.9 32 0.0007 33.8 8.8 59 64-133 99-163 (239)
66 COG0206 FtsZ Cell division GTP 67.1 1E+02 0.0023 31.8 12.7 96 20-133 12-127 (338)
67 PRK02261 methylaspartate mutas 67.0 93 0.002 27.6 11.4 72 22-107 6-81 (137)
68 PF02698 DUF218: DUF218 domain 64.4 43 0.00092 29.6 8.4 63 63-133 55-123 (155)
69 cd02071 MM_CoA_mut_B12_BD meth 63.7 95 0.0021 26.6 10.6 87 30-133 12-104 (122)
70 PRK09533 bifunctional transald 62.5 62 0.0013 38.0 11.1 85 198-295 812-897 (948)
71 PRK13018 cell division protein 61.6 1.1E+02 0.0025 32.0 12.0 135 20-191 29-184 (378)
72 PF02887 PK_C: Pyruvate kinase 59.2 11 0.00024 32.3 3.4 40 80-133 19-58 (117)
73 cd06259 YdcF-like YdcF-like. Y 58.5 86 0.0019 27.4 9.2 60 65-132 54-119 (150)
74 PF05673 DUF815: Protein of un 57.4 82 0.0018 31.2 9.5 152 15-179 48-207 (249)
75 PLN02828 formyltetrahydrofolat 57.1 23 0.0005 35.3 5.8 54 76-142 69-131 (268)
76 PRK09330 cell division protein 57.0 1E+02 0.0022 32.4 10.8 95 20-133 14-129 (384)
77 PRK13010 purU formyltetrahydro 56.7 68 0.0015 32.3 9.1 52 78-142 94-149 (289)
78 TIGR00065 ftsZ cell division p 56.3 99 0.0021 32.0 10.4 38 21-68 19-57 (349)
79 TIGR02370 pyl_corrinoid methyl 56.0 1.2E+02 0.0026 28.5 10.2 98 20-133 85-188 (197)
80 PF01339 CheB_methylest: CheB 55.5 3.5 7.5E-05 38.6 -0.3 63 24-90 1-63 (182)
81 COG0569 TrkA K+ transport syst 54.9 1.1E+02 0.0025 29.3 10.1 83 21-133 2-94 (225)
82 PF02254 TrkA_N: TrkA-N domain 53.9 81 0.0018 26.1 7.9 68 53-133 41-111 (116)
83 COG2185 Sbm Methylmalonyl-CoA 53.9 1.4E+02 0.0031 27.0 9.7 99 16-133 10-117 (143)
84 cd02067 B12-binding B12 bindin 53.8 66 0.0014 27.2 7.4 86 30-133 12-104 (119)
85 PF13419 HAD_2: Haloacid dehal 53.7 49 0.0011 28.7 6.9 76 52-133 92-172 (176)
86 TIGR00655 PurU formyltetrahydr 51.8 96 0.0021 31.1 9.2 93 19-141 42-139 (280)
87 cd06191 FNR_iron_sulfur_bindin 51.4 1.2E+02 0.0025 28.6 9.5 15 19-34 102-116 (231)
88 PF13460 NAD_binding_10: NADH( 50.7 1.7E+02 0.0038 25.9 10.2 91 22-124 1-100 (183)
89 cd01485 E1-1_like Ubiquitin ac 49.3 71 0.0015 30.0 7.5 20 20-41 20-39 (198)
90 PF02056 Glyco_hydro_4: Family 49.0 18 0.00039 34.0 3.4 31 167-197 120-152 (183)
91 PLN02331 phosphoribosylglycina 48.6 28 0.0006 33.4 4.6 50 80-142 2-57 (207)
92 PRK00994 F420-dependent methyl 48.3 1.6E+02 0.0034 29.2 9.6 121 33-174 14-146 (277)
93 cd02201 FtsZ_type1 FtsZ is a G 47.6 36 0.00077 34.3 5.5 39 21-69 2-41 (304)
94 TIGR01501 MthylAspMutase methy 47.6 2.1E+02 0.0045 25.6 10.9 64 31-107 15-79 (134)
95 PRK05442 malate dehydrogenase; 47.5 1.7E+02 0.0037 29.9 10.5 29 126-154 167-198 (326)
96 COG1660 Predicted P-loop-conta 46.9 3.2E+02 0.0069 27.5 15.6 130 20-183 2-137 (286)
97 PF14258 DUF4350: Domain of un 45.6 1.1E+02 0.0024 23.3 6.9 58 32-106 5-62 (70)
98 PF14606 Lipase_GDSL_3: GDSL-l 44.8 2E+02 0.0044 26.9 9.6 56 21-84 35-100 (178)
99 cd06211 phenol_2-monooxygenase 44.5 80 0.0017 30.0 7.2 14 20-34 110-123 (238)
100 PRK06027 purU formyltetrahydro 44.3 49 0.0011 33.2 5.8 53 77-142 89-145 (286)
101 PF00056 Ldh_1_N: lactate/mala 43.8 2E+02 0.0043 25.4 9.2 52 86-138 82-140 (141)
102 cd06185 PDR_like Phthalate dio 42.6 2.1E+02 0.0046 26.3 9.6 97 20-138 99-206 (211)
103 PF06792 UPF0261: Uncharacteri 42.3 62 0.0013 34.2 6.4 29 209-237 306-334 (403)
104 COG2352 Ppc Phosphoenolpyruvat 42.1 56 0.0012 37.6 6.3 121 70-222 443-571 (910)
105 cd06196 FNR_like_1 Ferredoxin 41.8 82 0.0018 29.3 6.7 118 5-137 83-215 (218)
106 PRK10669 putative cation:proto 41.3 77 0.0017 34.6 7.3 10 20-29 418-427 (558)
107 PF03668 ATP_bind_2: P-loop AT 41.3 1.7E+02 0.0038 29.5 9.1 95 20-133 2-102 (284)
108 COG4821 Uncharacterized protei 41.1 33 0.00072 33.0 3.8 37 77-123 104-140 (243)
109 cd02070 corrinoid_protein_B12- 39.7 2E+02 0.0044 26.9 9.0 96 21-133 84-186 (201)
110 cd06213 oxygenase_e_transfer_s 39.2 1.6E+02 0.0035 27.6 8.4 14 20-34 101-114 (227)
111 cd06212 monooxygenase_like The 39.2 1.8E+02 0.0039 27.4 8.7 22 19-41 103-125 (232)
112 cd02191 FtsZ FtsZ is a GTPase 39.1 74 0.0016 32.2 6.2 72 21-107 2-81 (303)
113 PF10432 bact-PGI_C: Bacterial 37.6 83 0.0018 28.6 5.8 52 340-391 101-153 (155)
114 PF05377 FlaC_arch: Flagella a 37.5 27 0.00059 26.5 2.1 20 355-380 35-54 (55)
115 cd05292 LDH_2 A subgroup of L- 36.7 1.1E+02 0.0023 30.9 7.0 9 21-29 2-10 (308)
116 TIGR02853 spore_dpaA dipicolin 36.5 1.5E+02 0.0033 29.6 8.0 27 125-155 249-275 (287)
117 PRK08351 DNA-directed RNA poly 35.6 32 0.00069 26.7 2.3 24 117-150 33-58 (61)
118 PRK13011 formyltetrahydrofolat 34.9 83 0.0018 31.6 5.8 53 76-141 88-144 (286)
119 PRK06222 ferredoxin-NADP(+) re 34.5 3.2E+02 0.0069 26.9 9.9 55 11-74 85-148 (281)
120 PRK10537 voltage-gated potassi 34.4 91 0.002 32.8 6.2 50 88-148 311-363 (393)
121 PF04056 Ssl1: Ssl1-like; Int 34.4 91 0.002 29.6 5.6 51 34-88 86-140 (193)
122 cd02202 FtsZ_type2 FtsZ is a G 32.3 1E+02 0.0022 31.8 6.1 46 21-72 2-49 (349)
123 PRK07609 CDP-6-deoxy-delta-3,4 31.8 2.1E+02 0.0046 28.8 8.3 16 19-35 204-219 (339)
124 PRK06179 short chain dehydroge 31.7 4.4E+02 0.0095 25.0 10.2 66 20-86 5-83 (270)
125 TIGR01662 HAD-SF-IIIA HAD-supe 30.7 3.3E+02 0.0071 23.0 8.6 74 52-133 40-126 (132)
126 PRK01438 murD UDP-N-acetylmura 29.9 74 0.0016 33.8 4.8 46 5-64 5-50 (480)
127 PF02719 Polysacc_synt_2: Poly 29.9 86 0.0019 31.8 4.9 43 22-74 1-43 (293)
128 PF01488 Shikimate_DH: Shikima 29.9 90 0.002 27.3 4.6 44 19-74 12-56 (135)
129 TIGR02253 CTE7 HAD superfamily 29.7 2.7E+02 0.0058 25.7 8.1 25 53-77 110-134 (221)
130 PRK06249 2-dehydropantoate 2-r 28.9 1.8E+02 0.0039 29.1 7.2 17 79-95 74-90 (313)
131 COG0299 PurN Folate-dependent 28.7 1.2E+02 0.0026 29.0 5.4 45 79-133 2-52 (200)
132 cd06209 BenDO_FAD_NAD Benzoate 28.5 3.7E+02 0.008 25.1 8.9 14 20-34 103-116 (228)
133 cd06215 FNR_iron_sulfur_bindin 28.3 1.3E+02 0.0028 28.1 5.7 15 19-34 103-117 (231)
134 PRK09004 FMN-binding protein M 28.1 2.3E+02 0.005 25.2 7.0 67 29-107 9-76 (146)
135 PRK06813 homoserine dehydrogen 28.1 2.9E+02 0.0063 28.6 8.6 14 164-178 191-204 (346)
136 PF04816 DUF633: Family of unk 28.1 1.5E+02 0.0032 28.3 6.0 70 16-92 64-145 (205)
137 cd06194 FNR_N-term_Iron_sulfur 28.0 2E+02 0.0043 26.8 6.9 15 20-35 98-112 (222)
138 cd02072 Glm_B12_BD B12 binding 28.0 4.1E+02 0.009 23.5 8.4 64 31-107 13-77 (128)
139 PF02310 B12-binding: B12 bind 27.8 3.2E+02 0.0069 22.6 7.5 41 29-77 12-53 (121)
140 PF00311 PEPcase: Phosphoenolp 27.4 24 0.00052 40.5 0.6 109 84-222 336-451 (794)
141 PF02083 Urotensin_II: Urotens 27.4 17 0.00037 19.1 -0.3 6 6-11 4-9 (12)
142 PRK12779 putative bifunctional 27.1 4.2E+02 0.009 31.3 10.5 36 5-41 727-772 (944)
143 cd00322 FNR_like Ferredoxin re 27.0 2.5E+02 0.0053 25.8 7.3 15 19-34 97-111 (223)
144 COG2093 DNA-directed RNA polym 26.9 56 0.0012 25.5 2.3 24 117-150 36-61 (64)
145 cd06216 FNR_iron_sulfur_bindin 26.7 4.9E+02 0.011 24.6 9.5 15 19-34 122-136 (243)
146 PRK05708 2-dehydropantoate 2-r 26.4 1.5E+02 0.0032 29.7 6.0 17 79-95 72-88 (305)
147 PRK03659 glutathione-regulated 26.2 7.2E+02 0.016 27.6 11.8 67 54-133 444-513 (601)
148 TIGR01214 rmlD dTDP-4-dehydror 25.4 5.2E+02 0.011 24.7 9.5 55 22-87 2-61 (287)
149 PRK02399 hypothetical protein; 25.0 5.5E+02 0.012 27.3 9.9 25 213-237 311-335 (406)
150 cd06187 O2ase_reductase_like T 25.0 4.3E+02 0.0093 24.4 8.6 28 6-34 79-112 (224)
151 PRK04452 acetyl-CoA decarbonyl 24.9 3.7E+02 0.0081 27.6 8.5 73 52-138 123-207 (319)
152 COG0460 ThrA Homoserine dehydr 24.8 2.6E+02 0.0057 28.9 7.4 13 165-178 183-195 (333)
153 PRK12921 2-dehydropantoate 2-r 24.7 2.8E+02 0.0061 27.1 7.6 17 79-95 70-86 (305)
154 PRK11382 frlB fructoselysine-6 24.6 4E+02 0.0086 27.1 8.8 86 18-122 207-293 (340)
155 TIGR01064 pyruv_kin pyruvate k 24.5 76 0.0016 34.3 3.7 43 77-133 373-415 (473)
156 PRK08219 short chain dehydroge 24.3 5.4E+02 0.012 23.3 10.6 65 20-86 4-81 (227)
157 PLN02252 nitrate reductase [NA 24.2 2.5E+02 0.0054 32.9 8.0 111 19-140 758-888 (888)
158 PRK09496 trkA potassium transp 24.2 5.1E+02 0.011 27.0 9.8 12 18-29 230-241 (453)
159 PRK11468 dihydroxyacetone kina 24.0 2.1E+02 0.0046 29.8 6.6 142 20-184 44-186 (356)
160 cd06217 FNR_iron_sulfur_bindin 23.8 1.6E+02 0.0034 27.7 5.4 15 19-34 107-121 (235)
161 TIGR02160 PA_CoA_Oxy5 phenylac 23.8 5.2E+02 0.011 26.1 9.5 14 20-34 110-123 (352)
162 COG1712 Predicted dinucleotide 23.7 5.4E+02 0.012 25.5 8.8 47 21-76 2-48 (255)
163 TIGR03649 ergot_EASG ergot alk 23.3 5.8E+02 0.012 24.5 9.4 92 22-122 2-105 (285)
164 TIGR01428 HAD_type_II 2-haloal 23.0 4.6E+02 0.01 23.7 8.3 23 53-75 108-130 (198)
165 cd06184 flavohem_like_fad_nad_ 22.7 2.8E+02 0.0061 26.3 7.0 16 19-35 113-128 (247)
166 PRK12815 carB carbamoyl phosph 22.6 4.4E+02 0.0095 31.5 9.8 18 16-33 4-21 (1068)
167 cd05291 HicDH_like L-2-hydroxy 22.6 3.8E+02 0.0082 26.8 8.1 10 21-30 2-11 (306)
168 TIGR01369 CPSaseII_lrg carbamo 22.5 5.1E+02 0.011 30.9 10.2 18 16-33 3-20 (1050)
169 cd02069 methionine_synthase_B1 22.2 3.3E+02 0.0072 26.0 7.2 65 30-107 101-166 (213)
170 cd05212 NAD_bind_m-THF_DH_Cycl 21.9 3.1E+02 0.0066 24.5 6.5 45 20-75 29-73 (140)
171 TIGR01509 HAD-SF-IA-v3 haloaci 21.9 5.4E+02 0.012 22.5 8.6 14 53-66 101-114 (183)
172 PRK08306 dipicolinate synthase 21.5 5.1E+02 0.011 25.9 8.8 27 125-155 250-276 (296)
173 TIGR01759 MalateDH-SF1 malate 21.5 8.7E+02 0.019 24.7 10.6 71 73-154 117-197 (323)
174 cd06198 FNR_like_3 NAD(P) bind 21.5 6.4E+02 0.014 23.2 9.1 28 6-34 77-109 (216)
175 PRK10826 2-deoxyglucose-6-phos 21.0 6E+02 0.013 23.5 8.7 84 52-147 107-198 (222)
176 PF01866 Diphthamide_syn: Puta 21.0 7E+02 0.015 25.0 9.7 76 17-107 147-238 (307)
177 PRK07066 3-hydroxybutyryl-CoA 21.0 1.4E+02 0.003 30.5 4.6 40 17-70 5-46 (321)
178 TIGR00322 diphth2_R diphthamid 20.5 9.3E+02 0.02 24.7 11.4 86 16-107 171-261 (332)
179 cd06210 MMO_FAD_NAD_binding Me 20.4 3.1E+02 0.0067 25.7 6.7 15 19-34 108-122 (236)
180 PRK12743 oxidoreductase; Provi 20.2 3.5E+02 0.0076 25.5 7.1 42 20-71 3-44 (256)
181 PF01993 MTD: methylene-5,6,7, 20.2 2.3E+02 0.0049 28.2 5.5 106 32-155 12-131 (276)
182 PF13344 Hydrolase_6: Haloacid 20.1 2.6E+02 0.0056 23.2 5.3 67 52-132 29-100 (101)
183 cd05293 LDH_1 A subgroup of L- 20.0 9.1E+02 0.02 24.4 11.0 15 20-34 4-20 (312)
No 1
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=4.2e-117 Score=935.72 Aligned_cols=416 Identities=63% Similarity=1.031 Sum_probs=378.9
Q ss_pred eeeeccCCCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCC
Q 013562 9 FWQVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTF 88 (441)
Q Consensus 9 ~~~~g~~g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG 88 (441)
.| +|++|++|++||+||||||+|||+|++++|+++......+.++++||++|+||.++.++++.++|++|||||+||||
T Consensus 133 ~~-~g~tg~~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~Fv~NvDp~~~~~~l~~ldp~~TLfiViSKSg 211 (552)
T PTZ00430 133 EI-LGSTGKKLKNVICIGIGGSYLGTEFVYEALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLDPEETLVVIISKTF 211 (552)
T ss_pred Cc-cCCCCCeeceEEEEcCCccchHHHHHHHHHhhcccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCC
Confidence 35 49999999999999999999999999999987531100112478999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCC-cccCCeEEEEeCChhHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchH
Q 013562 89 TTAETMLNARTLREWISTALGP-SAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSV 167 (441)
Q Consensus 89 ~T~ETl~~~~~~~~~l~~~~g~-~~~~~~~vavT~~~~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~ 167 (441)
+|+||++|++.+++||++++|. ....+|||+||++.+.|+++||+++|+|+||+|||||||+||+|||||+|+++|+|+
T Consensus 212 tT~ETl~n~~~~r~wl~~~~~~~~~~~~h~vavT~~~~~a~~~gi~~~~~f~~~d~VGGRySv~SaVGLlP~al~~G~d~ 291 (552)
T PTZ00430 212 TTAETMLNAKTVRQWLLDNIKSKEALSKHLCAVSTNLKLTSEFGIPDENVFGFWDWVGGRFSVTSAVGILPLSIQFGYDI 291 (552)
T ss_pred CCHHHHHHHHHHHHHHHHhccccccccCeEEEEcCchHHHHHcCCchhcEecCcCCcCCcceeeccchhHHHHHHcChHH
Confidence 9999999999999999876553 335789999999999999999999899999999999999999999999999779998
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccc
Q 013562 168 VEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLP 247 (441)
Q Consensus 168 ~~~lL~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~ 247 (441)
|++||+||++||+||+++|+++|+|++||++.+||.+++|+++++++||+++|++|+.|+||||||||||+++++|++++
T Consensus 292 ~~~lL~GA~~md~hf~~~~~~~N~pvllall~~~~~~~~g~~~~~vlpY~~~L~~f~~wlqQL~mES~GK~v~~~G~~v~ 371 (552)
T PTZ00430 292 VQQFLNGCHDMDEHFRTAPLEENLPVLLGLTSFYNSTFLGYNCVAILPYCQALLKFPAHVQQLLMESNGKSVTLDGNTLD 371 (552)
T ss_pred HHHHHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHHhcCCCCeEEEEecHHHHHHHHHHHHHHHHHhcCCccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCccceeeeeccccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcc
Q 013562 248 FEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKEN 327 (441)
Q Consensus 248 ~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~ 327 (441)
++||+++||++||+|||||+||+|||+.+++|||.+.+++++..+++....+|+.+++||++|.++|++||+.+++.+++
T Consensus 372 ~~tG~~~~G~~Gt~dQHSf~QllhqG~~~~~~FI~~~~~~~~~~i~~~~~~~~~~llan~laq~~aL~~Gk~~~~~~~~~ 451 (552)
T PTZ00430 372 YNTGEIYFGEPGTNGQHSFYQLLHQGRVVPSEFIGFAKSQNPIKLLGEPVSNHDELMSNFFAQPDALAFGKTYEELEKEG 451 (552)
T ss_pred cCccceeeCCCCCCcchhHHHHHHcCCCcceEEEEEeccCCCcCcCccccccHHHHHhhhHHHHHHHHcCCCHHHHHhcc
Confidence 99999999999999999999999999667899999988655544444333578999999999999999999999999888
Q ss_pred cCCCcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHHHHhhcccCC-
Q 013562 328 VAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKR- 406 (441)
Q Consensus 328 ~~~~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~~l~~~~~~~- 406 (441)
..+++.+|++++|||||++|.++++||++||+||++|||+|+++|++||||||||||||+||++|++|++++.+....+
T Consensus 452 ~~~~l~~~~~~~gnrPs~~I~l~~l~p~~lG~LialyEh~v~v~G~lwgINpFDQpGVElGK~la~~i~~~~~~~~~~~~ 531 (552)
T PTZ00430 452 VPEELIPHKVFPGNRPSLLLLFPELNPYTIGQLLALYEHRTVVEGFLWNINSFDQWGVELGKVLAKDVRNLFKDNRSNSS 531 (552)
T ss_pred chhhhhhcccCCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCCccHHHHHHHHHHHHHHHhccccccc
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999998643100
Q ss_pred --CCCCCCCchHHHHHHHHHH
Q 013562 407 --EPIEGFNFSTTTLLTRYLE 425 (441)
Q Consensus 407 --~~~~~~d~st~~l~~~~~~ 425 (441)
.+...||+||++||++|++
T Consensus 532 ~~~~~~~~d~st~~li~~~~~ 552 (552)
T PTZ00430 532 PHAKESKFNGSTKRLLSYYLQ 552 (552)
T ss_pred ccccccCCChHHHHHHHHHhC
Confidence 0134699999999999873
No 2
>PLN02649 glucose-6-phosphate isomerase
Probab=100.00 E-value=2.7e-116 Score=931.98 Aligned_cols=416 Identities=76% Similarity=1.222 Sum_probs=381.0
Q ss_pred eccCCCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCH
Q 013562 12 VGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTA 91 (441)
Q Consensus 12 ~g~~g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ 91 (441)
+|++|++|++||+||||||+|||+|+++||+++......+.++++||++|+||..+.++++.++|++|+|||+||||+|+
T Consensus 140 ~g~tg~~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~p~~TL~iViSKSgtT~ 219 (560)
T PLN02649 140 KGATGKRFTNVVSIGIGGSFLGPLFVHEALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLDPETTLVVVVSKTFTTA 219 (560)
T ss_pred ccCCCCccceEEEEecCcchHHHHHHHHHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCH
Confidence 49999999999999999999999999999997532111123468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCeEEEEeCChhHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHHHH
Q 013562 92 ETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKF 171 (441)
Q Consensus 92 ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~~l 171 (441)
||++|++.+++||++++|...+.+|||+||++.++++.+|++..++|++|+|||||||+||+|||||+|+++|+|+|++|
T Consensus 220 ET~~n~~~~r~~l~~~~g~~~~~~h~vavT~~~~l~~~a~~~~~~~F~~~d~VGGRfSv~SavGLlP~ala~G~d~~~~l 299 (560)
T PLN02649 220 ETMLNARTVRKWLRDALGGLAVAKHMVAVSTNLLLVNKFGIDPWNAFPFWDWVGGRYSVCSAVGLLPLSLQYGFDVVEEF 299 (560)
T ss_pred HHHHHHHHHHHHHHhhcccccccceEEEECCChHHHHHhCcCCccEEeCCCCCCCceeecchhhHHHHHHHhCHHHHHHH
Confidence 99999999999998776644457999999999999999999888899999999999999999999999998899989999
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccccccc
Q 013562 172 LKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAG 251 (441)
Q Consensus 172 L~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~tg 251 (441)
|+||++||+||.++|+++|+|++||++.+|+.+++|+++++++||+++|++|++|+|||+||||||+++++|++++++||
T Consensus 300 L~GA~~md~hf~~~~~~~N~p~llAll~~~~~~~~g~~~~vilpY~~~L~~f~~w~qQL~mES~GK~~~~~G~~v~~~tG 379 (560)
T PLN02649 300 LEGAASMDEHFRTAPLKENIPVLLGLLSVWNSSFLGYPARAILPYSQALLKFAPHIQQLDMESNGKGVDLDGNPLPVNTG 379 (560)
T ss_pred HHHHHHHHHHHhcCChhhCHHHHHHHHHHHHHhcCCCCeEEEeccchhHHHHHHHHHHHHHHhcCCccccCCCCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCccceeeeeccccceeEEEeeccCCccccc-cccccchhhhhhhcccchhHHhCCCCHHHHHhcccCC
Q 013562 252 EIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLK-GEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAP 330 (441)
Q Consensus 252 ~~~~g~~Gt~dqHS~~Qll~qG~~~~~dfi~~~~~~~~~~~~-~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~~~ 330 (441)
|++||++||+|||||+||||||+.+++|||.+.+++++..++ ....++|+.|++||+||.++|++||+.+++++++..+
T Consensus 380 ~~~~g~~Gt~dQHSf~QllhqG~~~~~~FI~~~~~~~~~~i~~~~~~~~~~~L~an~~aq~~aL~~Gk~~~~~~~~~~~~ 459 (560)
T PLN02649 380 EIDFGEPGTNGQHSFYQLIHQGRNIPCDFIGVVRSQQPVHLWLGEGVSNHDELMSNFFAQPDALAYGKTPEQLRAEGVPE 459 (560)
T ss_pred ceEecCCCCCchHHHHHHHHcCCCeeeEEEEECCcCCccccccccccchHHHHHHHHHhhHHHHHcCCCHHHHHhhcchh
Confidence 999999999999999999999966789999988765544343 2223679999999999999999999999999988888
Q ss_pred CcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHHHHhhcccCCCCCC
Q 013562 331 HLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIE 410 (441)
Q Consensus 331 ~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~~l~~~~~~~~~~~ 410 (441)
++++|+.++|||||++|.++++||++||+|||||||+|+++|+|||||||||||||+||++|++|+++|.....++....
T Consensus 460 ~l~~~~~~~gnrPs~~i~l~~l~p~~lG~LialyEh~v~v~G~lw~IN~FDQpGVElGK~la~~i~~~l~~~~~~~~~~~ 539 (560)
T PLN02649 460 ELIPHKVFAGNRPSLSILLPELTAYTVGQLLALYEHRVAVQGFIWNINSFDQWGVELGKALAKRVRAVLNEARTKGEPVE 539 (560)
T ss_pred hhhhcccCCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCchhHHHHHHHHHHHHHHhhcccccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999986422222345
Q ss_pred CCCchHHHHHHHHHHhC
Q 013562 411 GFNFSTTTLLTRYLEAS 427 (441)
Q Consensus 411 ~~d~st~~l~~~~~~~~ 427 (441)
+||+||++||++|+.+.
T Consensus 540 ~~d~sT~~li~~~~~~~ 556 (560)
T PLN02649 540 GFNSSTTALLNHYLANK 556 (560)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 69999999999999776
No 3
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-116 Score=878.18 Aligned_cols=401 Identities=55% Similarity=0.915 Sum_probs=380.9
Q ss_pred eccCCCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCH
Q 013562 12 VGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTA 91 (441)
Q Consensus 12 ~g~~g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ 91 (441)
+|++|++|++||.||||||+|||.|+.+||+++. ..++++||++|+||..+++.+++++||+|||||+||||+|.
T Consensus 143 ~g~tgk~itdVvnIGIGGSdLGP~mVteALk~y~-----~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTftT~ 217 (546)
T KOG2446|consen 143 KGYTGKKITDVVNIGIGGSDLGPLMVTEALKPYG-----PGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTFTTA 217 (546)
T ss_pred CCCCCCeeeeEEEecccccccchHHHHHhhccCC-----CCCceEEEEecCCchhHHHHHhccCccceEEEEEecCcCcH
Confidence 5899999999999999999999999999999985 24689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCcccCCeEEEEeCChhHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHHH
Q 013562 92 ETMLNARTLREWISTAL-GPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEK 170 (441)
Q Consensus 92 ETl~~~~~~~~~l~~~~-g~~~~~~~~vavT~~~~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~~ 170 (441)
||+.|++.+++|++++. .+..+++||||+++|.....+|||+++|+|+||||||||||+||+|| ||+||.+|+++|++
T Consensus 218 ETitnaetak~w~~a~~~d~s~VAkhfvAlstN~~~v~~fgid~~nmF~fwDWVGGRySlwSAvG-LsiaL~iGf~Nfe~ 296 (546)
T KOG2446|consen 218 ETITNAETAKEWFLAKAKDPSAVAKHFVALSTNTAEVEKFGIDPKNMFEFWDWVGGRYSLWSAVG-LSIALYIGFDNFEK 296 (546)
T ss_pred HHHhhHHHHHHHHHhhcCChHHHHHHHHHHhccHHHHHHhCCCcccccchhhhccCeeehhhhcC-cceeeehhHHHHHH
Confidence 99999999999999873 23446799999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCccccccc
Q 013562 171 FLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEA 250 (441)
Q Consensus 171 lL~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~t 250 (441)
||.||+.||+||+++|+++|+|+++|++.+||.++.|+++++++||+++|+.|++|+||+.||||||.++++|.+++|.|
T Consensus 297 ~L~GA~~mDehf~tTp~ekN~p~llal~~vwysn~~G~~t~~vlPYdqyl~rF~~YlQQ~~MESnGK~vt~~g~~v~~~t 376 (546)
T KOG2446|consen 297 LLKGAHAMDEHFRTTPLEKNIPVLLALLSVWYSNFFGAETHAVLPYDQYLHRFAAYLQQLSMESNGKEVTRDGNPVNYST 376 (546)
T ss_pred HhhhhHHHHHHhhcCCcccCHHHHHHHHHHHHhccCCCCceEEeehHHHHHHHHHHHHHhhhhhcCceeecCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccC
Q 013562 251 GEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVA 329 (441)
Q Consensus 251 g~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~~ 329 (441)
|+++||++|||+||||+||+||| +.+|+|||.++++++|.+. -.+|+.+++||+||+++||.|||.+++.+++..
T Consensus 377 G~ivwGepGTn~QHaf~QlihqGtr~ip~dFi~p~ks~~Pi~~----~~hh~~llsNf~aq~ealm~Gkt~~~~~~Eg~~ 452 (546)
T KOG2446|consen 377 GLIVWGEPGTNGQHAFYQLIHQGTRLIPADFIEPLKSHNPIHD----GLHHKMLLSNFLAQTEALMVGKTPEEAKKEGTA 452 (546)
T ss_pred cceeecCCCCCchhHHHHHHhhccccccHHHhhhhhccCCccc----chhHHHHHhhhhcchHHHHcCCCHHHHHhcccc
Confidence 99999999999999999999999 7899999999998887632 268899999999999999999999999999877
Q ss_pred CCcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHHHHhhcccCCCCC
Q 013562 330 PHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPI 409 (441)
Q Consensus 330 ~~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~~l~~~~~~~~~~ 409 (441)
. +.||++|.||||+++|++++++|++||+|||+|||+++++|.+||||+|||||||+||++|++|+++|+... ..
T Consensus 453 ~-l~phk~f~gnRpt~Si~~~kvTP~tlGAlIA~YEh~ifv~g~iw~INSfdQwGVElGKklAk~V~~~l~~~~----~v 527 (546)
T KOG2446|consen 453 S-LLPHKVFSGNRPTISIVLQKVTPFTLGALIALYEHKIFVQGIIWNINSFDQWGVELGKKLAKEVLAELDSSG----TV 527 (546)
T ss_pred c-ccchhhhcCCCCceeEEeeccChHHHHHHHHHHHHHHhhheeEeccccccchhhHHHHHHHHHHHHHHhccc----cc
Confidence 6 889999999999999999999999999999999999999999999999999999999999999999999754 45
Q ss_pred CCCCchHHHHHHHHHHhC
Q 013562 410 EGFNFSTTTLLTRYLEAS 427 (441)
Q Consensus 410 ~~~d~st~~l~~~~~~~~ 427 (441)
..||+||..+|+.+++..
T Consensus 528 ~~~d~stn~li~~lk~~~ 545 (546)
T KOG2446|consen 528 LTHDASTNGLINLLKEIA 545 (546)
T ss_pred cccccccchHHHHHHHhc
Confidence 679999999999998653
No 4
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=100.00 E-value=5.5e-113 Score=905.73 Aligned_cols=400 Identities=50% Similarity=0.869 Sum_probs=369.2
Q ss_pred eccCCCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCH
Q 013562 12 VGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTA 91 (441)
Q Consensus 12 ~g~~g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ 91 (441)
+|++|++|++||+||||||+|||+|++++|.++. ..++++||++|+||.++.++++.++|++|+|||+||||+|+
T Consensus 138 ~g~~g~~~~~vV~IGIGGS~LGp~~~~~al~~~~-----~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL~iViSKSgtT~ 212 (548)
T PRK00179 138 KGYTGKAITDVVNIGIGGSDLGPVMVTEALRPYA-----DPGLRVHFVSNVDGAHLAETLKKLDPETTLFIVASKTFTTQ 212 (548)
T ss_pred cCCCCCccCeEEEECCCcchHHHHHHHHHhhhhc-----cCCCceEEEeCCCHHHHHHHHhcCCcccEEEEEEeCCCCCH
Confidence 5999999999999999999999999999998742 13468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-ccCCeEEEEeCChhHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHHH
Q 013562 92 ETMLNARTLREWISTALGPS-AVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEK 170 (441)
Q Consensus 92 ETl~~~~~~~~~l~~~~g~~-~~~~~~vavT~~~~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~~ 170 (441)
||++|++.+++||.+++|.+ ...+|||+||++.+.++++|++++|+|++|+|||||||+||+|||+|++++ |+|+|++
T Consensus 213 ET~~n~~~~~~~l~~~~~~~~~~~~h~vaVT~~~~~~~~~g~~~~~~F~~~d~VGGRfSvlSavGL~pa~~~-G~d~~~~ 291 (548)
T PRK00179 213 ETLTNAHSARDWFLAAGGDEAAVAKHFVAVSTNAEAVAEFGIDPDNMFGFWDWVGGRYSLWSAIGLSIALAI-GPDNFEE 291 (548)
T ss_pred HHHHHHHHHHHHHHHhcCccccccceEEEEcCCcHHHHHcCCchhcEEECCCCCCCcceecchhhHHHHHHh-CcHHHHH
Confidence 99999999999998776543 468899999999988999999988999999999999999999998888775 9998899
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCccccccc
Q 013562 171 FLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEA 250 (441)
Q Consensus 171 lL~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~t 250 (441)
||+||++||+||.++|+++|+|++||++.+||.+++|+++++++||+++|++|++|+|||+|||+||+++++|+++++++
T Consensus 292 lL~GA~~md~~f~~~~~~~N~p~llall~~~~~~~~g~~~~vllpY~~~L~~f~~w~qQL~mES~GK~~~~~G~~v~~~t 371 (548)
T PRK00179 292 LLAGAHAMDEHFRTAPLEKNLPVLLALIGVWYRNFFGAQSHAVLPYDQYLHRFPAYLQQLEMESNGKSVDRDGTPVDYQT 371 (548)
T ss_pred HHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHHhcCCCCeEEEecchHHHHHHHHHHHHHhhhhcCCccccCCCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhc---
Q 013562 251 GEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKE--- 326 (441)
Q Consensus 251 g~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~--- 326 (441)
+|++||++||+|||||+|||||| +.+++|||.+.+++++. ..+|+.+++||++|.++|+.|++.++++++
T Consensus 372 ~piv~g~~Gt~dQHSf~QllhqG~~~~~~~FI~~~~~~~~~------~~~~~~l~~n~~aq~~al~~Gk~~~~~~~~~~~ 445 (548)
T PRK00179 372 GPIIWGEPGTNGQHAFFQLLHQGTKLVPADFIAPAQPHNPL------GDHHDLLLANCFAQTEALMFGKTAEEVRAELRA 445 (548)
T ss_pred cceeecCCCCchhHHHHHHHhccCCCeeeEEEEEcCCCCcc------chhhHhhcCCccccHHHHhcCCCHHHHHHHHhh
Confidence 99999999999999999999999 57899999988765433 246889999999999999999999998764
Q ss_pred -----ccCCCcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHHHHhh
Q 013562 327 -----NVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHA 401 (441)
Q Consensus 327 -----~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~~l~~ 401 (441)
+..+++++|+.++|||||++|.++++||++||+|||+|||+|+++|+|||||||||||||+||++|++|+..+.+
T Consensus 446 ~~~~~~~~~~l~~~~~~~gnrPs~~i~l~~l~p~~lG~LialyEh~~~v~g~l~gIN~FDQpGVElGK~la~~il~~~~~ 525 (548)
T PRK00179 446 KGLDEAEAEELAPHKVFPGNRPSTTILLDRLTPFTLGALIALYEHKVFVQGVIWGINSFDQWGVELGKQLAKRILPELEG 525 (548)
T ss_pred cccchhHHHHhhhcccCCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCchhHHHHHHHHHHHHHHhcC
Confidence 334567899999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHhC
Q 013562 402 SRMKREPIEGFNFSTTTLLTRYLEAS 427 (441)
Q Consensus 402 ~~~~~~~~~~~d~st~~l~~~~~~~~ 427 (441)
.. ...++|+||++||++|+.++
T Consensus 526 ~~----~~~~~d~sT~~li~~~~~~~ 547 (548)
T PRK00179 526 DS----EASAHDSSTNGLINRYRAWR 547 (548)
T ss_pred CC----CCCCCChHHHHHHHHHHHhc
Confidence 33 23369999999999999764
No 5
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=5.5e-111 Score=884.99 Aligned_cols=388 Identities=42% Similarity=0.694 Sum_probs=354.0
Q ss_pred eeeeccCCCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCC
Q 013562 9 FWQVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTF 88 (441)
Q Consensus 9 ~~~~g~~g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG 88 (441)
.| +|++|++|++||+||||||+|||+|++++|+++. ..+.++||++|+||..+.+++..++|++|||||+||||
T Consensus 142 ~~-~g~tg~~~~~VV~IGIGGS~LGp~av~~AL~~~~-----~~~~~l~fvsNvDp~~~~e~L~~ldpe~TLfiviSKSG 215 (533)
T PRK14095 142 EI-KNSNGKKFTTVVQIGIGGSDLGPKALYLALKNYA-----KKDKRVHFISNVDPDDAAEVLSEIDLAKTLFIVVSKSG 215 (533)
T ss_pred Cc-cCCCCCccceEEEEecCcchHhHHHHHHHHHhhc-----cCCceEEEECCCCHHHHHHHHhcCCcccEEEEEEeCCC
Confidence 35 4999999999999999999999999999999753 13458999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCChhHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHH
Q 013562 89 TTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVV 168 (441)
Q Consensus 89 ~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~ 168 (441)
+|.||++|++.+++|+++. |. .+.+|||+||++.+.+.++ ....++|++|+|||||||+||+|||||+|+++|+|+|
T Consensus 216 tT~ETl~n~~~~r~wl~~~-G~-~~~~h~VaVT~~~s~l~~~-~~~~~~f~~~d~VGGRfSv~SavGLlp~ala~G~d~~ 292 (533)
T PRK14095 216 TTLETAANEEFVRDALKKA-GL-DYKKHFIAVTSEGSPMDDE-SGYLEVFHMWDSIGGRFSSTSMVGGVVLGFAFGFEVF 292 (533)
T ss_pred CCHHHHHHHHHHHHHHHHc-Cc-cccceEEEEECCchHHHhh-cCccccCCCCCCCCCcccccccchHHHHHHHcChHHH
Confidence 9999999999999999775 43 3578999999987655554 3445799999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCccccc
Q 013562 169 EKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPF 248 (441)
Q Consensus 169 ~~lL~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~ 248 (441)
++||+||++||+||.++|+++|+|+++|++.+|+.+++|+++++++||+++|++|++|+|||+||||||+++++|+++++
T Consensus 293 ~~lL~GA~~mD~hf~~~~~~~N~p~l~All~~~~~~~~g~~~~~~lpY~~~L~~f~~~lqQL~mESnGK~v~~~G~~v~~ 372 (533)
T PRK14095 293 KEFLKGAAAMDKAALNPNIRENLPLLAALIGIWNRNFLGYPTTAVIPYSQALERFPAHLQQLDMESNGKSVNRFGEPINF 372 (533)
T ss_pred HHHHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHhccCCCCeEEEecchHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCccceeeeec-cccceeEEEeeccCCcc--ccccccccchhhhhhhcccchhHHhCCCCHHHHHh
Q 013562 249 EAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPV--YLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQK 325 (441)
Q Consensus 249 ~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~--~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~ 325 (441)
+|||++||++||+|||||+|||||| +.+|+|||.+.+++.+. .+++ ..+|+.+++||+||.++|+.||+.+
T Consensus 373 ~t~pi~wg~~Gt~~QHSf~QllhqG~~~~~~dFI~~~~~~~~~d~~i~~--~~~~~~L~an~~Aq~~al~~G~~~~---- 446 (533)
T PRK14095 373 KTGPIIWGEPGTNGQHSFFQLLHQGTDIVPVEFIGFKESQLGQDIVIQG--STSQQKLFANLIAQIIALACGKENT---- 446 (533)
T ss_pred CcccceecCCCCCcHHHHHHHHhcCCCCcceeEEEEcCCCCcccccCCC--CchHHHHHHHHHHHHHHHhcCCccc----
Confidence 9999999999999999999999999 57899999988765322 2332 2468999999999999999999876
Q ss_pred cccCCCcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHHHHhhcccC
Q 013562 326 ENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMK 405 (441)
Q Consensus 326 ~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~~l~~~~~~ 405 (441)
.+|+.++|||||++|.++++||++||+||++|||+|+++|+|||||||||||||+||++|++|+.+|.+.
T Consensus 447 -------~~~~~~~gnrPs~~i~l~~l~p~~lG~LialyEh~v~v~G~lwgIN~FDQ~GVElGK~la~~il~~~~~~--- 516 (533)
T PRK14095 447 -------NPNKNFKGNRPSSLLVAKQLTPYTLGALLAHYENKVMFQGFCWNINSFDQEGVQLGKVLANQILGIMKGE--- 516 (533)
T ss_pred -------hhhhhcCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHheeecCcCCCCchHHHHHHHHHHHHHHHhcCC---
Confidence 2688899999999999999999999999999999999999999999999999999999999999999742
Q ss_pred CCCCCCCCchHHHHHHHHH
Q 013562 406 REPIEGFNFSTTTLLTRYL 424 (441)
Q Consensus 406 ~~~~~~~d~st~~l~~~~~ 424 (441)
. .++|+||++||++|.
T Consensus 517 --~-~~~d~st~~li~~~~ 532 (533)
T PRK14095 517 --A-PGEFPEADGLLKLFN 532 (533)
T ss_pred --C-CCCChHHHHHHHHHh
Confidence 1 469999999999875
No 6
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=100.00 E-value=6.8e-111 Score=883.77 Aligned_cols=393 Identities=50% Similarity=0.793 Sum_probs=353.1
Q ss_pred eccCCCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCH
Q 013562 12 VGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTA 91 (441)
Q Consensus 12 ~g~~g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ 91 (441)
++.++++|++||+||||||+|||+|++++|.++.. ..++++|++|+||.++.++++.+++++|+|||+||||+|+
T Consensus 89 ~~~~~~~~~~vV~IGIGGS~LGp~~~~~al~~~~~-----~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iViSKSgtT~ 163 (486)
T PF00342_consen 89 KGRTGKPITDVVVIGIGGSSLGPRALYEALKPYFS-----NPPRLHFLDNVDPADLARLLERLDPETTLFIVISKSGTTI 163 (486)
T ss_dssp BHTTSSB-SEEEEE--GGGTHHHHHHHHHTGGGTT-----SSCEEEEESSSSHHHHHHHHTTSTGGGEEEEEEESSST-H
T ss_pred ccccCCceeEEEEEecchhhHHHHHHHHHhhhhcc-----cceEEEEeccCChHHHHHHHhcCCCccEEEEEecCCCCCH
Confidence 56889999999999999999999999999998641 3479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC-CcccCCeEEEEeCChhHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHHH
Q 013562 92 ETMLNARTLREWISTALG-PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEK 170 (441)
Q Consensus 92 ETl~~~~~~~~~l~~~~g-~~~~~~~~vavT~~~~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~~ 170 (441)
||+.||+.+++||+++++ ++.+++||||||++.+.+.++|++++++|+||+|||||||+||+|| ||+|++.|+++|++
T Consensus 164 ET~~n~~~~~~~l~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~d~VGGRfSv~SaVG-lp~ala~G~~~~~~ 242 (486)
T PF00342_consen 164 ETLANFRIAREWLEKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIPDWVGGRFSVLSAVG-LPLALAGGFIDFEE 242 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--TTS-GGGTTTSGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccccceEEEeCCCchHHHHHHHHHhcceeccccccccccCCCCCc-hHHHHHcChhhHHH
Confidence 999999999999999987 4557899999999999999999998899999999999999999999 99999877655999
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCccccccc
Q 013562 171 FLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEA 250 (441)
Q Consensus 171 lL~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~t 250 (441)
||+||++||+||.++|+++|+|++||++++|+.+++|+++++++||+++|+.|++|||||||||+||+++.+|+++++.+
T Consensus 243 lL~GA~~md~~f~~~~~~~N~p~~~All~~~~~~~~g~~~~~i~~Y~~~L~~l~~w~qQL~mESlGK~~~~~G~~~~~~t 322 (486)
T PF00342_consen 243 LLAGARAMDEHFRSAPLEKNPPVLYALLRVWNSNFLGYNIEVILPYSPRLRRLPAWLQQLWMESLGKSVDRDGEPVDYGT 322 (486)
T ss_dssp HHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTST-SEEEEEESSGGGTTHHHHHHHHHHHHHSESBTTTSSBESSEE
T ss_pred HHHHHHHHHHHhcCCChhhCHHHHHHHHHHHHHhhhccchhccccCChHHHHHHHHHHHhcccccchhhcccCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccC
Q 013562 251 GEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVA 329 (441)
Q Consensus 251 g~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~~ 329 (441)
+|++||++||+|||||+|||||| +.+++|||.+++..... ..+|+.+++||++|.++|+.||+.++++++...
T Consensus 323 ~pi~~G~~Gt~dqHS~~Qll~qG~~~~~~~fi~~~~~~~~~------~~~~~~l~~n~~~q~~~L~~Gk~~~~~~~~~~~ 396 (486)
T PF00342_consen 323 GPIVWGGVGTNDQHSFFQLLHQGGRDKPVDFILFVKNPHDD------LDIHDILLANCLAQLDALAFGKTLEELNKEAFA 396 (486)
T ss_dssp SEEEEEEETTGGGGTSHHHHHHSSSSCEEEEEEEECCSSSG------CHHHHHHHHHHHHHHHHHHHTBBHHHHHHHHHH
T ss_pred CccccCCCCCccccccceeecccCceEEEEEEEEccccccc------cccchhhhhhhhHHHHHHHCCCCHHHHHhhhcc
Confidence 99999999999999999999998 68899999988775532 356788999999999999999999999886544
Q ss_pred C---CcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHHHHhhcccCC
Q 013562 330 P---HLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKR 406 (441)
Q Consensus 330 ~---~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~~l~~~~~~~ 406 (441)
. ++.+|+.++|||||++|+++++||++||+|||+|||+|+++|+|||||||||||||+||++|++|+..++...
T Consensus 397 ~~~~~l~~~~~~~Gn~Ps~~I~l~~l~~~~lG~Lia~yE~~~~v~g~l~~INpFDQpGVElgK~~a~~il~~~~~~~--- 473 (486)
T PF00342_consen 397 ATAETLAAHKVFPGNRPSTTILLDELDPYSLGALIAFYEHKTFVQGYLWGINPFDQPGVELGKKLAKKILGKLEGEE--- 473 (486)
T ss_dssp THHHHHHHGHHBTTT-EEEEEEESESSHHHHHHHHHHHHHHHHHHHHHHTS-TT--GGGHHHHHHHHHHHHHHSSSS---
T ss_pred ccHHHHHHhhhhcCCcceeeeecccCCchHHHHHHHHHHHHHHHhhhhcCcCCCCCccHHHHHHHHHHHHhhccCCC---
Confidence 4 7889999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred CCCCCCCchHHHHH
Q 013562 407 EPIEGFNFSTTTLL 420 (441)
Q Consensus 407 ~~~~~~d~st~~l~ 420 (441)
...+||+||++||
T Consensus 474 -~~~~~d~st~~l~ 486 (486)
T PF00342_consen 474 -QVSGHDSSTAALI 486 (486)
T ss_dssp -TCCSSHHHHHHHH
T ss_pred -CCCCCChhhhhhC
Confidence 3468999999997
No 7
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=4.7e-98 Score=786.24 Aligned_cols=352 Identities=32% Similarity=0.501 Sum_probs=311.4
Q ss_pred eccCCCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCC--CCcEEEEEECCCCC
Q 013562 12 VGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN--PETTLVVVVSKTFT 89 (441)
Q Consensus 12 ~g~~g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~--~~~TlviviSKSG~ 89 (441)
+|++|++|++||+||||||+|||+++++||++.. .++++||+||+||..+.++++.++ +++|||||+||||+
T Consensus 107 ~~~~g~~~~~vV~IGIGGS~LGp~~v~~AL~~~~------~~~~~~f~dN~Dp~~~~~~l~~l~~~~~~TLviViSKSGt 180 (528)
T PRK14096 107 KPPNGEKFTDVLWIGIGGSALGPQFVAEALQPNS------DGLNIHFIDNTDPDGIDRVLAELGDRLATTLVVVISKSGG 180 (528)
T ss_pred cCCCCCCCCeEEEECCCcchHHHHHHHHHHhhcC------CCCcEEEEcCCCHHHHHHHHHHhcCCCCcEEEEEEeCCCC
Confidence 5899999999999999999999999999998632 346899999999999999999997 99999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCChhHHHHcCCCCC--CeeeeccccCCcchhhhcchhhhhhhccCchH
Q 013562 90 TAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPN--NAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSV 167 (441)
Q Consensus 90 T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~~~A~~~gi~~~--~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~ 167 (441)
|.||++|++.+++|++++ |.+ ..+|+||||++.+.+++++++.. ++|++|+|||||||+||+|||||+|++ |+|
T Consensus 181 T~ET~~n~~~~~~~l~~~-G~~-~~~h~VAVT~~~s~L~~~A~~~g~~~~F~~~d~VGGRfSv~SaVGLlP~al~-G~d- 256 (528)
T PRK14096 181 TPETRNGMLEAKAAYEAA-GLD-FASHAVAITMKGSKLDQLAQSEGWLARFPMWDWVGGRTSETSAVGLLPAALQ-GID- 256 (528)
T ss_pred CHHHHHHHHHHHHHHHhh-ccc-ccceEEEEECCCcHHhhhccccCceeEeeCCCCCCCcccccchhhHHHHHHh-CcC-
Confidence 999999999999999765 333 57899999997766666665543 599999999999999999999999994 999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccc
Q 013562 168 VEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLP 247 (441)
Q Consensus 168 ~~~lL~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~ 247 (441)
|++||+||++||+||+.+|+++|+|++||++.+|+.+++|++.++++||+++|+.|++|+|||+|||+||+++++|+++
T Consensus 257 i~~lL~GA~~md~~~~~~~~~~N~~~llal~~~~~~~~~g~~~~~vlpY~~~L~~f~~wlqQL~mES~GK~~~~~G~~v- 335 (528)
T PRK14096 257 IRAFLAGAKQMDEATRVPDLKNNPAALLALAWYYAGDGKGKKDMVVLPYKDRLLLFSRYLQQLVMESLGKELDLDGNVV- 335 (528)
T ss_pred HHHHHHHHHHHHHHhhcCCcccCHHHHHHHHHHHHHhcCCCCeEEEEECcHHHHHHHHHHHHHhhhccCCccccCCcCc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccCCCCCCCCCCccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhc
Q 013562 248 FEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKE 326 (441)
Q Consensus 248 ~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~ 326 (441)
.+|+++||+.||+|||||+|||||| +.+++|||.+.++.++..+ ++..|++..++...
T Consensus 336 -~~G~~v~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~~~~--------------------~~~~g~~~~~~l~~ 394 (528)
T PRK14096 336 -HQGIAVYGNKGSTDQHAYVQQLRDGVDNFFVTFIEVLEDRQGSSI--------------------EVEPGVTSGDYLSG 394 (528)
T ss_pred -cccCeEecCCCCCchHHHHHHHHccCCCeeEEEEeEcCCCCccch--------------------hhccCCCHHHHHHH
Confidence 4899999999999999999999999 4788999998765322111 01235555555442
Q ss_pred ccCCCcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHH
Q 013562 327 NVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 397 (441)
Q Consensus 327 ~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~ 397 (441)
....+ .++.++|||||++|+++++||++||+||++|||+|+++|+|||||||||||||+||++|++|++
T Consensus 395 ~~~gt--~~al~~g~rPs~~I~l~~l~p~~lGaLialyE~~v~~~g~l~~IN~FDQpGVE~GK~~a~~il~ 463 (528)
T PRK14096 395 FLQGT--RQALYENGRQSITITIPEVNPRTLGALIALFERAVGLYASLVNINAYHQPGVEAGKKAAAAILD 463 (528)
T ss_pred HHhCc--HhhhhcCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCCccHHHHHHHHHHHHH
Confidence 22222 2456799999999999999999999999999999999999999999999999999999999886
No 8
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1.3e-92 Score=738.59 Aligned_cols=351 Identities=26% Similarity=0.402 Sum_probs=302.3
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchh---HHhhhCCceEEEe-cCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLE---AIECARGRQLRFL-ANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETM 94 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~---~~~~~~~~~i~fv-~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl 94 (441)
+++||+||||||+|||+|++++|++... ....+++++++|+ +|+||.++.++++.+++++|+||||||||+|+||+
T Consensus 73 ~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~~l~~l~~~~tl~iViSKSGtT~ET~ 152 (448)
T PRK14097 73 SDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLADLLEYLKDKDFSINVISKSGTTTEPA 152 (448)
T ss_pred CCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHHHHhhCCCCcEEEEEEeCCCCCHHHH
Confidence 5999999999999999999999975210 0001124688877 67999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccCCeEEEEeCCh-----hHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHH
Q 013562 95 LNARTLREWISTALGPSAVAKHMVAVSTNL-----TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVE 169 (441)
Q Consensus 95 ~~~~~~~~~l~~~~g~~~~~~~~vavT~~~-----~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~ 169 (441)
++|+.+++||++++|.+.+.+|+|+||++. ++|++.|+. +|+||+|||||||+||+|||||+|++ |+| |+
T Consensus 153 ~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~---~f~ip~~VGGRfSvlSavGLlP~al~-G~d-i~ 227 (448)
T PRK14097 153 IAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYE---TFVIPDDVGGRFSVLTAVGLLPIAVA-GID-ID 227 (448)
T ss_pred HHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcC---EEeCCCCCCcccccccHhHHHHHHHh-hhh-HH
Confidence 999999999977767555678899999764 378888887 99999999999999999999999997 999 89
Q ss_pred HHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccccc
Q 013562 170 KFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFE 249 (441)
Q Consensus 170 ~lL~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~ 249 (441)
+||+||++|+++|.++++++|+|+++|++++|+. .+|+++++++||+++|+.|++|||||||||+||+ |+++
T Consensus 228 ~lL~GA~~m~~~~~~~~~~~N~a~l~A~~~~~~~-~~g~~~~vl~~Y~~~L~~f~~w~~QL~aESlGK~----g~G~--- 299 (448)
T PRK14097 228 ALMKGAADARKDYSSSDLSENPAYQYAAVRNILY-RKGYTTEILVNYEPSLQYFSEWWKQLFGESEGKD----QKGI--- 299 (448)
T ss_pred HHHHHHHHHHHHhhcCChhhCHHHHHHHHHHHHH-hCCCCeEEEEEChHHHHHHHHHHHHHhccccccC----CCCc---
Confidence 9999999999999999999999999999998887 7899999999999999999999999999999996 4433
Q ss_pred cccccCCCCCCCCCCccceeeeecc-ccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhccc
Q 013562 250 AGEIDFGEPGTNGQHSFYQLIHQGR-VIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENV 328 (441)
Q Consensus 250 tg~~~~g~~Gt~dqHS~~Qll~qG~-~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~ 328 (441)
+|.+++||+|||||+|++|||+ +++++|+.+.+++.+..+++. .++++.+ |++ .|++.++++++..
T Consensus 300 ---~P~~~igt~dqHS~~Ql~~~G~~~~~~t~i~~~~~~~~~~i~~~-~~~~~~l--~~l-------~g~~~~~l~~~~~ 366 (448)
T PRK14097 300 ---FPASANFSTDLHSLGQYIQEGRRNLFETVIKVEKPRKDLTIPED-EEDLDGL--NYL-------AGKTVDFVNKKAF 366 (448)
T ss_pred ---ccccCccCCCcchhhhHHHhCCCcEEEEEEeecCCCCcCCCCcc-cccchhh--hhh-------cCCCHHHHHHhhh
Confidence 4556789999999999999995 555667766555444334322 1222332 333 6999999998888
Q ss_pred CCCcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHH
Q 013562 329 APHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 397 (441)
Q Consensus 329 ~~~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~ 397 (441)
.+++.+|+ ++|||+++|.++++||++||+||++|||+|+++|+|||||||||||||+||+++++++.
T Consensus 367 ~at~~al~--~~~~P~~~I~l~~l~~~~lG~L~~~yE~~t~~~G~l~gINpFDQpGVE~gK~~~~~~l~ 433 (448)
T PRK14097 367 EGTLLAHT--DGGVPNIVVNIPELDEYTFGYLVYFFEKACAISGYLLGVNPFDQPGVEAYKKNMFALLG 433 (448)
T ss_pred hhhHhhHh--hCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCccHHHHHHHHHHHhC
Confidence 88888887 89999999999999999999999999999999999999999999999999999998753
No 9
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-92 Score=732.52 Aligned_cols=367 Identities=47% Similarity=0.741 Sum_probs=337.7
Q ss_pred CcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHH
Q 013562 18 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 97 (441)
Q Consensus 18 ~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~ 97 (441)
++++||+||||||+|||++++++|.++. ..++++||++|+||+++.+++..+++++|+|+|+||||||+||+.||
T Consensus 78 ~~~~IV~IGIGGS~LG~~~~~~aL~~~~-----~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~ 152 (446)
T COG0166 78 KITDIVNIGIGGSDLGPRAVTEALRPYA-----PNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNF 152 (446)
T ss_pred ccceEEEeCCchhHHHHHHHHHHhhhhc-----cCCCceEEecCCCchhhhHHHhccCcccEEEEEEeCCCCcHHHHHHH
Confidence 7999999999999999999999999974 23589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEeCChh-HHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHHHHHHHHH
Q 013562 98 RTLREWISTALGPSAVAKHMVAVSTNLT-LVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAW 176 (441)
Q Consensus 98 ~~~~~~l~~~~g~~~~~~~~vavT~~~~-~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~~lL~GA~ 176 (441)
+.+++|+.++ .+.+.+|+|+++++.. +++.+++...++|.||+|||||||+||+||++|+++. |.| |+++|+||+
T Consensus 153 ~~~r~~~~~~--~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~VGGRfS~~SaVG~l~~a~~-~~~-~~~lL~Ga~ 228 (446)
T COG0166 153 RLARKWLEKK--EEAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVGGRYSVLSAVGLLPLALG-GID-FKELLEGAA 228 (446)
T ss_pred HHHHHHHHhh--hhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCCCCCccchhHHHHHHHHHHh-ccc-HHHHHHHHH
Confidence 9999999887 5556789999988764 4447777766799999999999999999999999985 888 999999999
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccccccccccCC
Q 013562 177 SIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFG 256 (441)
Q Consensus 177 ~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~tg~~~~g 256 (441)
+|+++|.+.++++|+|+++|++++|+.+++|+.+++++||+++|+.|++|+|||+|||+||++..+|.++.+.|++++||
T Consensus 229 ~~d~~~~~~~l~~N~~~l~ali~~~~~~~~G~~~~~i~~Y~~~l~~f~~~~qQL~~ES~GK~~~~~~~~~~~~t~~~~~g 308 (446)
T COG0166 229 AADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPYDPYLEYFPAWLQQLNMESNGKSVKGIGPEVNFHTDPISWG 308 (446)
T ss_pred HHHHHhccCChhhcHHHHHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHHhccCCCccCcCCccccCCCceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCCCCCCccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCcCCc
Q 013562 257 EPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPH 335 (441)
Q Consensus 257 ~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~~~~l~~~ 335 (441)
.+|+++||+|+|++||| +.+|++||.+.+.+.+. ..+|+.+++|+++|..++++|++..+..
T Consensus 309 ~~g~~gqh~ffql~~qgt~~~p~~~I~~~~~~~~~------~~~~~~L~~~~~aq~~~~a~~~t~~~~~----------- 371 (446)
T COG0166 309 EPGTNGQHAFFQLLHQGTDLKPADFIEIEESIEDL------DGHHDKLLSNFLAQTEALAFGKTLLAHT----------- 371 (446)
T ss_pred cccccCceeEEEEEEecccccchhhccccccccCc------cchHHHHHHhHHHHHHHHHhhhhhhHhh-----------
Confidence 99999999999999999 47899999988776543 2368999999999999999998887642
Q ss_pred ccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHHHHhhcccCCCCCCCCCch
Q 013562 336 KTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFS 415 (441)
Q Consensus 336 ~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~~l~~~~~~~~~~~~~d~s 415 (441)
.||||++.|.++++||+++|+|+++|||+|+++|++||||||||||||+||++|++|+..+... +..+.+|+|
T Consensus 372 ---~gn~P~~~i~~~~l~p~~~G~l~a~yE~~~~~~G~l~~in~FdQ~GVElgK~~~~~ll~~~~~~----~~~~~~~~~ 444 (446)
T COG0166 372 ---AGNRPSNLILLRELTPYTLGALIALYEHKTFVQGVLWGINSFDQPGVELGKKLAFALLGKLGGE----LSAELHDSS 444 (446)
T ss_pred ---cCCCCceEEEecCCChhhhHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhhccCC----ccccccccc
Confidence 3899999999999999999999999999999999999999999999999999999999998863 235678988
Q ss_pred HH
Q 013562 416 TT 417 (441)
Q Consensus 416 t~ 417 (441)
|+
T Consensus 445 ~~ 446 (446)
T COG0166 445 TE 446 (446)
T ss_pred cC
Confidence 73
No 10
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=2.6e-92 Score=734.25 Aligned_cols=351 Identities=32% Similarity=0.427 Sum_probs=301.6
Q ss_pred CcCeEEEEccCccchHHHHHHHHhhcchh--H-HhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHH
Q 013562 18 VLKDVVAVGIGGSFLGPLFVHTALQTDLE--A-IECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETM 94 (441)
Q Consensus 18 ~~~~vV~iGiGGS~LG~~~l~~al~~~~~--~-~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl 94 (441)
.+++||+||||||+||++|+++++++... . .+++.+++++|++|+||.++.++++.+++++|+||||||||+|+||+
T Consensus 70 ~~~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~l~~l~~~~Tl~iviSKSGtT~ET~ 149 (446)
T PRK00973 70 NFDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASILDVIDLEKTLFNVISKSGNTAETL 149 (446)
T ss_pred cCCEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHHHHhCCcccEEEEEEeCCCCCHHHH
Confidence 48999999999999999999999986421 0 00112367999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccCCeEEEEeCC-----hhHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHH
Q 013562 95 LNARTLREWISTALGPSAVAKHMVAVSTN-----LTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVE 169 (441)
Q Consensus 95 ~~~~~~~~~l~~~~g~~~~~~~~vavT~~-----~~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~ 169 (441)
++|+.+++|| +++|. ..++|+|+||++ .++|+++|++ +|++|+|||||||+||+|||+|++++ |+| |+
T Consensus 150 ~~f~~~~~~l-~~~g~-~~~~~~vaiTd~~~g~L~~~A~~~g~~---~f~ip~~VGGRfSvlSaVGL~p~a~~-G~d-i~ 222 (446)
T PRK00973 150 ANYLIIRGIL-EKLGL-DPKKHLVFTTDPEKGKLKKIAEKEGYR---TLEIPENVGGRFSVLTPVGLAPAAAL-GID-IE 222 (446)
T ss_pred HHHHHHHHHH-HhcCc-cccceEEEEcCCCccchHHHHHHcCCc---EEeeCCCCCcceeeecHHHHHHHHHh-Ccc-HH
Confidence 9999999999 56663 357799999995 2689999998 99999999999999999999999986 999 89
Q ss_pred HHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccccc
Q 013562 170 KFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFE 249 (441)
Q Consensus 170 ~lL~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~ 249 (441)
+||+||++|+++|.++++++|+|+++|++++|+.+ +|+++++++||+++|++|++|||||||||+||+ |
T Consensus 223 ~lL~GA~~m~~~~~~~~~~~N~a~~~a~~~~~~~~-~g~~~~vl~~Y~~~L~~f~~w~~QL~~ES~GK~----~------ 291 (446)
T PRK00973 223 ELLEGAKEMDKICEKEDIFKNPALLNALIHYLYYN-RGKNISVMMPYSERLKYFGDWYRQLWAESLGKK----G------ 291 (446)
T ss_pred HHHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHHh-CCCCeEEEEEcHHHHHHHHHHHHHHHHHhcCCC----C------
Confidence 99999999999999999999999999999888765 899999999999999999999999999999996 3
Q ss_pred cccccCCCCCCCCCCccceeeeecc-ccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhccc
Q 013562 250 AGEIDFGEPGTNGQHSFYQLIHQGR-VIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENV 328 (441)
Q Consensus 250 tg~~~~g~~Gt~dqHS~~Qll~qG~-~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~ 328 (441)
+|++||+++||+|||||+||+|||+ +++++||.+.+++.+..+++.. .+.+.+ | ++.|++.+++++...
T Consensus 292 ~G~~P~~~~Gt~dqHS~~Ql~~qG~~~~~~tfi~v~~~~~~~~i~~~~-~~~~~l--~-------~l~g~t~~~l~~~~~ 361 (446)
T PRK00973 292 VGQTPVKALGATDQHSQLQLYMEGPKDKIITFLKVEKYRRDVEIPYEY-EDIEEL--S-------YLGGHKLSELINSEQ 361 (446)
T ss_pred CCCceecCCCCccHHHHHHHHHhCCCCeEEEEEEECCCCCccCCCcch-hhhhHH--h-------hhcCCCHHHHHHHHh
Confidence 3668899999999999999999995 6788999877654443233211 111111 2 236999999977554
Q ss_pred CCCcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHHH
Q 013562 329 APHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQ 398 (441)
Q Consensus 329 ~~~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~~ 398 (441)
..+..++ .++|||+++|.++++||++||+||+||||+|+++|+|||||||||||||+||++|++++..
T Consensus 362 ~at~~al--~~~~~P~~~I~l~~l~~~~lG~L~~~~E~~t~~~G~llgINpFDQPGVE~gK~~~~~~l~~ 429 (446)
T PRK00973 362 KGTEIAL--TENGRPNVKITLDELNEYTVGQLFYMYEMQTAFMGELLNINAFDQPGVELGKKITYALLGR 429 (446)
T ss_pred hhhHHHH--hhCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhcCcCCCCCccHHHHHHHHHHHhcC
Confidence 4444333 3689999999999999999999999999999999999999999999999999999998443
No 11
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=5.7e-89 Score=704.76 Aligned_cols=347 Identities=28% Similarity=0.408 Sum_probs=292.9
Q ss_pred CcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHH
Q 013562 18 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 97 (441)
Q Consensus 18 ~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~ 97 (441)
++++||+||||||+||++++++++.++. ..+++++|++|+||.++.++++.+++++|+|||+||||+|.||++++
T Consensus 57 ~~~~VV~iGIGGS~LG~~~l~~al~~~~-----~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGtT~ETl~~~ 131 (410)
T PRK03868 57 SIKNIVVIGIGGSSLGVKAIYSFLKNEK-----NNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGTTIETISIF 131 (410)
T ss_pred CCCEEEEEecChHHHHHHHHHHHHHhhc-----cCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHH
Confidence 6899999999999999999999996531 12468999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEeCCh----hHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHHHHHH
Q 013562 98 RTLREWISTALGPSAVAKHMVAVSTNL----TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLK 173 (441)
Q Consensus 98 ~~~~~~l~~~~g~~~~~~~~vavT~~~----~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~~lL~ 173 (441)
+.+++|+.+. + + ..+|+++||++. +.|++.|++ +|++|+|||||||+||+|||||+|++ |+| +++||+
T Consensus 132 ~~~~~~~~~~-~-~-~~~~~v~vTd~~s~L~~~a~~~g~~---~f~ip~~VGGRfSvlSavGLlP~a~~-G~d-i~~lL~ 203 (410)
T PRK03868 132 KYLLSHFKLD-Q-E-LKKNFLFITDPDSKLEQFAKENNIK---CFNIPKNVGGRFSVLSAVGIVPLALC-GYD-IKALLE 203 (410)
T ss_pred HHHHHHhccc-c-c-cccEEEEEecCCchHHHhHHhcCCc---EEecCCCCCcceeecchhhHHHHHHh-Ccc-HHHHHH
Confidence 9999988432 2 2 467999999754 578889997 99999999999999999999999996 999 799999
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccccccccc
Q 013562 174 GAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEI 253 (441)
Q Consensus 174 GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~tg~~ 253 (441)
||++|++||..++++ ..++++.+|+.++.|+++++++||+++|++|++|||||||||+||+. |... .+|++
T Consensus 204 GA~~m~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~~L~~f~~w~~QL~~ES~GK~~---~~~~--~~G~~ 274 (410)
T PRK03868 204 GAKACKDSFFEQKED----HILKKAYFYATHKNAYNINVLFSYSDALKGFNDWYVQLWGESLGKKQ---GYKT--RVGLT 274 (410)
T ss_pred HHHHHHHHhhcCCHH----HHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHhhhhccccc---cCCC--ceeeE
Confidence 999999999876653 25555567887889999999999999999999999999999999983 2322 58999
Q ss_pred cCCCCCCCCCCccceeeeecc-ccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCc
Q 013562 254 DFGEPGTNGQHSFYQLIHQGR-VIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHL 332 (441)
Q Consensus 254 ~~g~~Gt~dqHS~~Qll~qG~-~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~~~~l 332 (441)
|||++||+|||||+||+|||+ .++++||.+.+.+.+..+++. +...+. . ..++.|++.+++++....++.
T Consensus 275 p~~~~Gt~dqHS~~Ql~~qG~~~~~~tfi~~~~~~~~~~i~~~----~~~~~~----~-~~~l~g~~~~~~~~a~~~at~ 345 (410)
T PRK03868 275 PIGLIGSRDQHSFLQLIMEGPRDKTVTFIKIKDFQNAPKIPNI----SLKGLE----S-LDFVNGVSFNELINAQCDATM 345 (410)
T ss_pred EeccCCCCchhHHHHHHhcCCcCCCeEEEEEcCcCCCcCcccc----cccccc----c-hhhhcCCCHHHHHHHHHHHHH
Confidence 999999999999999999995 788999987665443323321 111111 1 123478999998775444443
Q ss_pred CCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHH
Q 013562 333 IPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 397 (441)
Q Consensus 333 ~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~ 397 (441)
.++ .++|||+++|.++++||++||+||++|||+|+++|+|||||||||||||+||++|++++.
T Consensus 346 ~al--~~~~~P~~~i~l~~l~~~~lG~L~~~yE~~t~~~g~l~~INpFDQpGVE~gK~~~~~~l~ 408 (410)
T PRK03868 346 EAL--IAEDIPVDVITLEKLDEFSIGYLIYYYELLTSAVGKMLGINTYDQPGVEVGKRILKEKLQ 408 (410)
T ss_pred HHH--HhCCcCeEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhcCcCCCCCccHHHHHHHHHHHHh
Confidence 333 468999999999999999999999999999999999999999999999999999999753
No 12
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=100.00 E-value=2.6e-63 Score=550.25 Aligned_cols=315 Identities=27% Similarity=0.356 Sum_probs=252.0
Q ss_pred CCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHH
Q 013562 16 GKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETML 95 (441)
Q Consensus 16 g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~ 95 (441)
+++|++||+||||||+||++++.+++.... ..++++|++|+||..+.++++.+++++|+|||+||||+|.||++
T Consensus 452 ~~~~d~VVviGIGGS~LG~~~l~~~l~~~~------~~p~l~~ldn~DP~~v~~~l~~~~~e~TLvIViSKSGtT~ET~s 525 (948)
T PRK09533 452 AEGFTDAVVLGMGGSSLGPEVLAETFGQRD------GFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGTLEPNI 525 (948)
T ss_pred cCCCCEEEEEccChhHHHHHHHHHHHHhcC------CCceEEEEeCCChHHHHHHHhhCCcccEEEEEEeCCCCCHHHHH
Confidence 456999999999999999999999987531 23678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccCCeEEEEeCCh----hHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHHHH
Q 013562 96 NARTLREWISTALGPSAVAKHMVAVSTNL----TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKF 171 (441)
Q Consensus 96 ~~~~~~~~l~~~~g~~~~~~~~vavT~~~----~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~~l 171 (441)
+++.+++|+.+++|. ..++|||+||++. ++|+++|++ ++|.+|++||||||+||+|||+|++++ |+| ++++
T Consensus 526 a~~~~~~~l~~~~g~-~~~~~~VaVTdpgs~L~~~A~~~G~~--~vf~~~p~VGGRYSVLSavGLvPaa~~-GiD-i~~l 600 (948)
T PRK09533 526 FKDYFFARVKEVLGA-KAGRHFVAVTDPGSSLEKVAKEDGFR--KIFHGDPDIGGRYSVLSPFGLVPAAAA-GID-VRAL 600 (948)
T ss_pred HHHHHHHHhhhhccc-ccCCeEEEEeCCCChHHHHHHHcCCe--eEecCCCCCCcchHHhhhhhhHHHHHh-Cch-HHHH
Confidence 999999999776665 4588999999842 578889996 599999999999999999999999986 999 7999
Q ss_pred HHHHHHHHHHhh-CCCCCCCHHHHHHH-HHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccccc
Q 013562 172 LKGAWSIDQHFI-SAPYEKNIPVLLGL-LSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFE 249 (441)
Q Consensus 172 L~GA~~m~~~~~-~~~~~~N~a~~lA~-l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~ 249 (441)
|+||++|++++. ..|..+|+|++||+ +.+|+. .|+. .++++|+++|+.|+.|++||+|||+||+ |+.+ +|
T Consensus 601 L~GA~~m~~~~~~~~~~~~Npa~~Laaal~~~~~--~Gr~-~V~i~Ys~~L~~f~~W~~QL~aES~GK~----g~Gl-~P 672 (948)
T PRK09533 601 LDSALAMVRSCGPSVPPADNPGVQLGLALGVAAT--QGRD-KVTIVASPAIADFGAWAEQLIAESTGKE----GKGL-IP 672 (948)
T ss_pred HHhHHHHHHHhccCCCcccCHHHHHHHHHHHHHh--CCCc-EEEEEChHHHHHHHHHHHHHHHhhcCCC----CCCc-cC
Confidence 999999999775 45888999999987 456543 4754 5667799999999999999999999997 4332 12
Q ss_pred cccccCCCCCCCCCCccceeeeeccccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccC
Q 013562 250 AGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVA 329 (441)
Q Consensus 250 tg~~~~g~~Gt~dqHS~~Qll~qG~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~~ 329 (441)
..-..++.++++ |... + |+.+...+ .. +. .+.++.++|.
T Consensus 673 v~~e~vg~~~~~-----------g~d~-~-fi~l~~~~---------~~-~~----~~~at~~AL~-------------- 711 (948)
T PRK09533 673 IDGEPLGDPAVY-----------GNDR-V-FVYLRLAG---------EA-DA----AQDAALAALE-------------- 711 (948)
T ss_pred CcceeecccCCC-----------CCCc-E-EEEEeccc---------cc-hH----HHHHHHHHHH--------------
Confidence 211222333332 2111 1 23221110 00 10 1112222221
Q ss_pred CCcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHHHHHHHHHhh
Q 013562 330 PHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHA 401 (441)
Q Consensus 330 ~~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a~~i~~~l~~ 401 (441)
.+|+|+++|.++ ++++||+||++||++|+++|++||||||||||||.+|+.+++++.+++.
T Consensus 712 ---------~~g~P~~~I~l~--~~~~LG~lf~l~E~atav~G~LlGINPFDQPgVE~~K~~~~~ll~~~~~ 772 (948)
T PRK09533 712 ---------AAGHPVVRIVLD--SAEQLGQEFFRWEMATAVAGAVLGINPFDQPDVEASKIKTRELTAAYEK 772 (948)
T ss_pred ---------hcCCCeEEEEeC--ChHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhh
Confidence 368999999998 9999999999999999999999999999999999999999999887754
No 13
>cd05016 SIS_PGI_2 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=100.00 E-value=5.6e-51 Score=373.17 Aligned_cols=161 Identities=55% Similarity=0.906 Sum_probs=143.5
Q ss_pred CcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccccccccccCCCCCCCCCCccceeeeecc-ccceeEEEeeccC
Q 013562 209 PARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGR-VIPCDFIGVVKSQ 287 (441)
Q Consensus 209 ~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~tg~~~~g~~Gt~dqHS~~Qll~qG~-~~~~dfi~~~~~~ 287 (441)
++++++||+++|++|++|+|||||||+||+.+++|+ +++||++|||++||+|||||+|++|||+ .+++|||.+.+++
T Consensus 1 ~~~vl~~Y~~~L~~f~~w~qQL~~ES~GK~~~~~g~--~~~~G~~p~g~~Gt~dqHS~~Ql~~qG~~~~~~~fi~~~~~~ 78 (164)
T cd05016 1 KTHALLPYSQRLERFPAWLQQLDMESNGKSVTRDGE--DYPTGPIPWGAPGTNDQHSFFQLIHQGTKDKPVDFIAVKKPQ 78 (164)
T ss_pred CeEEEEEcHHHHHHHHHHHHHhHhhcCCCccccCCC--cCCceeEEecCCCCCCCCcccchhhcCCCcEEEEEEEECCcC
Confidence 468999999999999999999999999999999998 6789999999999999999999999995 6889999987765
Q ss_pred Ccc--ccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCcCCcccCCCCcceeEEEecCCCcccHHHHHHHHH
Q 013562 288 QPV--YLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYE 365 (441)
Q Consensus 288 ~~~--~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e 365 (441)
.+. ++.+ ...|+.+.+|++||.++|+ +++|||+++|.++++||+++|+||++||
T Consensus 79 ~~~~~~~~~--~~~~~~l~a~~~a~~~aL~----------------------~~g~~P~~~i~l~~l~~~~lG~L~~~yE 134 (164)
T cd05016 79 NDVLDYLAG--KTLHDLLLANCLATREALM----------------------FPGGRPSNTIVLPELTPYTLGALLALYE 134 (164)
T ss_pred cchhhcccC--CcHHHHHHHHHHHHHHHHH----------------------hcCCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 331 1111 3567888889998888874 2689999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcchHHhHHHHHHH
Q 013562 366 HRIAVEGFIWGINSFDQWGVELGKSLATQV 395 (441)
Q Consensus 366 ~~t~v~g~L~gINPFDQpGVE~gK~~a~~i 395 (441)
|+|+++|++||||||||||||+||++|++|
T Consensus 135 ~~t~~~G~l~gINpFDQpgVE~gK~~a~~i 164 (164)
T cd05016 135 HKTAVQGALLGINPFDQPGVELGKKLAKKI 164 (164)
T ss_pred HHHHHHHHhcCcCCCCChhHHHHHHHHhcC
Confidence 999999999999999999999999999864
No 14
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=100.00 E-value=5.1e-35 Score=296.73 Aligned_cols=288 Identities=15% Similarity=0.093 Sum_probs=219.9
Q ss_pred CCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHH
Q 013562 17 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLN 96 (441)
Q Consensus 17 ~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~ 96 (441)
+++++|+++|+|||+++++.+...+... .+.++.++.... ++....++++||++|+||+|.||+.+
T Consensus 32 ~~~~~I~i~G~GgS~~~a~~~~~~l~~~-------~~~~~~~~~~~~-------~~~~~~~~dlvI~iS~SG~T~e~~~a 97 (337)
T PRK08674 32 EKIDNIVISGMGGSGIGGDLLRILLFDE-------LKVPVFVNRDYT-------LPAFVDEKTLVIAVSYSGNTEETLSA 97 (337)
T ss_pred cCCCEEEEEECcHHHHHHHHHHHHHHhc-------CCCcEEEeCccc-------hhhcCCCCcEEEEEcCCCCCHHHHHH
Confidence 3689999999999999999988776331 245555553321 23344789999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEeCCh---hHHHHcCCCCCCeeeeccccCCcch----------hhhcchhhhhhhcc
Q 013562 97 ARTLREWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRYS----------VCSAVGVLPLSLQY 163 (441)
Q Consensus 97 ~~~~~~~l~~~~g~~~~~~~~vavT~~~---~~A~~~gi~~~~~f~ip~~VGGRfS----------v~S~vGLlp~al~~ 163 (441)
++.+++ + +..+|+||++. +.|++.|++ ++.+|.++++|+| +++.+|++|++.+
T Consensus 98 ~~~a~~----~------ga~vIaIT~~~~L~~~a~~~~~~---~i~ip~~~~~r~s~~~ll~~l~~~l~~~Gl~~~~~~- 163 (337)
T PRK08674 98 VEQALK----R------GAKIIAITSGGKLKEMAKEHGLP---VIIVPGGYQPRAALGYLFTPLLKILEKLGLIPDKSA- 163 (337)
T ss_pred HHHHHH----C------CCeEEEECCCchHHHHHHhcCCe---EEEeCCCCcchhhHHHHHHHHHHHHHHcCCCccchh-
Confidence 999986 3 46899999865 456667888 9999999999999 9999999997753
Q ss_pred CchHHHHHHHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccC
Q 013562 164 GFSVVEKFLKGAWSIDQHFIS-APYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSID 242 (441)
Q Consensus 164 G~d~~~~lL~GA~~m~~~~~~-~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~ 242 (441)
| ++++++++.++.+.+.. .+..+|+|..+|.- .+....+++. +..+..++.||+|+|+||.|-
T Consensus 164 --d-~~~~~~~l~~~~~~~~~~~~~~~~~A~~lA~~-------~~~~~pv~~g-s~~~~~~a~~~~~~~~Ena~~----- 227 (337)
T PRK08674 164 --E-VLETKIVLSELAEGLKEKVPTLKNLAKRLAGK-------LYGRIPVIYG-SGLTLAVAYRWKTQINENAKY----- 227 (337)
T ss_pred --h-HHHHHHHHHHHHHhhCcCCCcccCHHHHHHHH-------HhCCCCEEEe-CcccHHHHHHHHHHHHHhcCC-----
Confidence 6 89999999999998864 35568998876651 2234677777 999999999999999999942
Q ss_pred CcccccccccccCCCCCCCCCCccceeeeec-cccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHH
Q 013562 243 GVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPE 321 (441)
Q Consensus 243 G~~~~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~ 321 (441)
.++.+.++++||+..|++++| +..+..++.+.++. . |+.. . .+.++ +.+
T Consensus 228 ----------~~~~~~~pe~~H~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~-~---~~~~~-----t~~ 277 (337)
T PRK08674 228 ----------PAFYNEIPELNHNEIVGYERPQSLLKYFFVVVLRDS----------E-HPRI-K---KRVEI-----TID 277 (337)
T ss_pred ----------ccccccCCcccccceeeccCchhhccceEEEEEcCC----------c-cHHH-H---HHHHH-----HHH
Confidence 123467899999999999999 45443333332221 1 1111 0 01111 111
Q ss_pred HHHhcccCCCcCCcccCCCCcceeEEEec-CCCcccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHHH
Q 013562 322 QLQKENVAPHLIPHKTFSGNRPSLSLLLP-SLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLA 392 (441)
Q Consensus 322 ~l~~~~~~~~l~~~~~~~g~rPs~~I~l~-~l~~~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~a 392 (441)
.+ -..+.|+..|..+ +.+++.+|+|++++++++++.|.++||||||||+||.+|+.+
T Consensus 278 ~~--------------~~~~~~~~~i~~~g~~~~~~l~~L~~~~d~as~~la~~~gvdP~~~~~ie~~K~~~ 335 (337)
T PRK08674 278 IL--------------TEAVINVIEIYPEGNSPLARIFSLIYLGDFASLYLAELRGVDPTPVPIIDYLKRRL 335 (337)
T ss_pred HH--------------HhcCCCeEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHHh
Confidence 11 1347999999999 699999999999999999999999999999999999999865
No 15
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=99.98 E-value=7e-32 Score=246.04 Aligned_cols=140 Identities=51% Similarity=0.742 Sum_probs=122.2
Q ss_pred CCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHH
Q 013562 17 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLN 96 (441)
Q Consensus 17 ~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~ 96 (441)
+++++||++|||||++|++++.+++.... ..+++++|++|+||+.++++++.+++++|+||++||||+|.||+.+
T Consensus 18 ~~~~~iv~~GiGGS~lg~~~~~~~~~~~~-----~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG~T~Et~~~ 92 (158)
T cd05015 18 KKITDVVVIGIGGSDLGPRAVYEALKPYF-----KGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSGTTLETLAN 92 (158)
T ss_pred CCCCEEEEEecCccHHHHHHHHHHHHhhc-----cCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCcCCHHHHHH
Confidence 57999999999999999999999998753 2367899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEeCChhHHHH-cCCCCCCeeeeccccCCcchhhhcchhhhhhhc
Q 013562 97 ARTLREWISTALGPSAVAKHMVAVSTNLTLVEK-FGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQ 162 (441)
Q Consensus 97 ~~~~~~~l~~~~g~~~~~~~~vavT~~~~~A~~-~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~ 162 (441)
++.+++||++++++ ..++|+|+||++.+.+++ .+....++|.+|++||||||++|++||||++++
T Consensus 93 ~~~a~~~l~~~~~~-~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~~~vggR~S~Ls~~gl~p~a~~ 158 (158)
T cd05015 93 ARLAREWLEEAGGD-DLAKHFVAITDNGSGLLKKAGIEGLNTFEIPDWVGGRFSVLSSVGGLPLALA 158 (158)
T ss_pred HHHHHHHHHHhccc-cccceEEEEcCCChHHHHHcCCCcceeeeCCCCCCchHHHHhHHHHHHHHHC
Confidence 99999999998765 358899999997653333 333333499999999999999999999999873
No 16
>cd05798 SIS_TAL_PGI SIS_TAL_PGI: Transaldolase (TAL)/ Phosphoglucose isomerase (PGI). This group represents the SIS (Sugar ISomerase) PGI domain, of a multifunctional protein (TAL-PGI ) having both TAL and PGI activities. TAL_PGI contains an N-terminal TAL domain and a C-terminal PGI domain. TAL catalyzes the reversible conversion of sedoheptulose-7-phosphate (S7P) and glyceraldehyde-3-phosphate (G3P), to fructose-6-phosphate (F6P) and erythrose-4-phosphate (E4P). PGI catalyzes the reversible isomerization of F6P to glucose-6-phosphate (G6P). It has been suggested for Gluconobacter oxydans TAL_PGI that this enzyme generates E4P and G6P directly from S7P and G3P. G. oxydans TAL_PGI contributes to increased xylitol production from D-arabitol. As xylitol is an alternative natural sweetner to sucrose, the microbial conversion of D-arabitol to xylitol is of interest to food and pharmaceutical industries.
Probab=99.97 E-value=7.4e-31 Score=230.14 Aligned_cols=125 Identities=23% Similarity=0.304 Sum_probs=91.2
Q ss_pred EEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccccccccccCCCCCCCCCCccceeeeeccccc-eeEE-EeeccCCc
Q 013562 212 AILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIP-CDFI-GVVKSQQP 289 (441)
Q Consensus 212 ~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~-~dfi-~~~~~~~~ 289 (441)
+.++|+++|++|++|++||||||+||+ |+++ +|. .|||+.| |+.+ -|.+ ..+
T Consensus 3 ~~~~y~~~l~~f~~W~~QL~AES~GK~----G~Gl------~Pv------~~hS~~q-----p~~~~~d~~~i~L----- 56 (129)
T cd05798 3 VTIIASPGIASLGAWLEQLIAESTGKE----GKGI------IPV------DGEPLGD-----PAVYGDDRVFVYL----- 56 (129)
T ss_pred EEEecchhHHhHHHHHHHHHHHhcCCC----Ccee------eec------CCCCCCC-----CCCCCCCeEEEEE-----
Confidence 567899999999999999999999995 6543 322 2999999 3322 1211 011
Q ss_pred cccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCcCCcccCCCCcceeEEEecCCCcccHHHHHHHHHHHHH
Q 013562 290 VYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIA 369 (441)
Q Consensus 290 ~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~lG~Li~~~e~~t~ 369 (441)
+++++++.....++.++ ..+|+|++.|.++ |++++|+||++||++|+
T Consensus 57 -----------------------------~~~~~~~~~~~at~~AL--~~~g~P~~~i~~~--~~~~lG~l~~~~e~ata 103 (129)
T cd05798 57 -----------------------------RLAGEADADQEEALLAL--EAAGHPVIRIDLD--DAYDLGQEFFRWEMATA 103 (129)
T ss_pred -----------------------------echhhhHHHHHHHHHHH--HhCCCCeEEEecC--CHHHHHHHHHHHHHHHH
Confidence 00111111111111122 2468999999997 99999999999999999
Q ss_pred HHHHHhccCCCCCcchHHhHHHHHHH
Q 013562 370 VEGFIWGINSFDQWGVELGKSLATQV 395 (441)
Q Consensus 370 v~g~L~gINPFDQpGVE~gK~~a~~i 395 (441)
++|++||||||||||||+||++++++
T Consensus 104 ~~g~llgINpFDQPgVE~~K~~~~~~ 129 (129)
T cd05798 104 VAGAVLGINPFDQPDVEASKIETRRL 129 (129)
T ss_pred HHHHhcCcCCCCCccHHHHHHHHhcC
Confidence 99999999999999999999999863
No 17
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=99.69 E-value=7.1e-15 Score=147.83 Aligned_cols=279 Identities=13% Similarity=0.084 Sum_probs=182.1
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~ 98 (441)
+++|+++|+|||.++++.+...+.... .+.+++++.+.. +.....+++++|++|+||+|.||+.+++
T Consensus 21 ~~~I~i~G~G~S~~~a~~l~~~l~~~~------~~~~v~~~~d~~-------l~~~~~~~dlvI~iS~SG~t~e~~~a~~ 87 (308)
T TIGR02128 21 YDEIVICGMGGSGIAGRIISILLLEKS------FQGPVFVVKDYR-------LPRFVDGKTLLIAVSYSGNTEETLSAVE 87 (308)
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHHhC------CCccEEEEcCcc-------ccccCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 689999999999999999888776521 024555554432 2344578999999999999999999999
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCCh---hHHHHcCCCCCCeeeeccccCCcchh---hhcchhhhhhhccCchHHHHHH
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRYSV---CSAVGVLPLSLQYGFSVVEKFL 172 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~---~~A~~~gi~~~~~f~ip~~VGGRfSv---~S~vGLlp~al~~G~d~~~~lL 172 (441)
.+++ + +.++|+||++. ++|++.|.+ ++.+|+.++||||+ +++++.++.... |.| +++.-
T Consensus 88 ~A~~----~------g~~ii~iT~~g~L~~~a~~~~~~---~i~vP~~~~~R~s~~~~~~~~l~~l~~~~-g~d-~~~~~ 152 (308)
T TIGR02128 88 EAKK----K------GAKVIAITSGGRLEEMAKERGLD---VIKIPKGLQPRAAFPYLLTPLILMLIKPL-GID-IEEAE 152 (308)
T ss_pred HHHH----c------CCEEEEECCCcHHHHHHHhcCCe---EEEcCCCCCCeeeHHHHHHHHHHHHHHHc-CCC-hHHHH
Confidence 8876 3 45799999764 567777888 89999999999999 778887777654 877 55543
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCccccccccc
Q 013562 173 KGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGE 252 (441)
Q Consensus 173 ~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~tg~ 252 (441)
+-. .. ...+..+|+|..||.- ..|+ .-++..-++ ....+..|++-++|-- |. +.. .
T Consensus 153 ~~l----~~-~~~~~~~n~Ak~LA~~------l~~~-~pvi~~~~~-~~~~A~R~k~~l~ena-k~------~a~--~-- 208 (308)
T TIGR02128 153 LLE----GG-LDTPKLKALAKRLAEE------IYNR-IPVIYSSSP-TRPIAERWKNEINENA-KS------PAY--Y-- 208 (308)
T ss_pred HHh----cC-CccccccCHHHHHHHH------hhCC-CCEEEeCCc-cHHHHHHHHHHHHhhc-CC------ccc--c--
Confidence 221 00 2335678999999983 1242 444544445 7888888888878843 43 110 1
Q ss_pred ccCCCCCCCCCCccceeeeeccccceeEEEeeccCCccccccccccchhhhhhhcccchhHHhCCCCHHHHHhcccCCCc
Q 013562 253 IDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHL 332 (441)
Q Consensus 253 ~~~g~~Gt~dqHS~~Qll~qG~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~~L~~g~~~~~l~~~~~~~~l 332 (441)
..-+...|.....+.. +...+.++.+....+ . + ....+. +. ..++
T Consensus 209 ----~~lpe~~hn~i~~~~~-~~~~~~~~~~~d~~d-~----~-~~~~r~---------~~------~~~~--------- 253 (308)
T TIGR02128 209 ----NILPELNHNEIEGLED-PYGLYEIVFMSDESD-H----S-RCPKRV---------DI------TEKI--------- 253 (308)
T ss_pred ----ccCCcccccceeeecc-ccccceEEEeecccc-c----h-hHHHHH---------HH------HHHH---------
Confidence 1113444433333322 111122222221110 0 0 000000 00 0111
Q ss_pred CCcccCCCCcceeEEEecCCCc-ccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHH
Q 013562 333 IPHKTFSGNRPSLSLLLPSLNA-YNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSL 391 (441)
Q Consensus 333 ~~~~~~~g~rPs~~I~l~~l~~-~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~ 391 (441)
.+.|.+.|.-+.-++ ..+=.|+++-.++.++.+.+.|+||..-|-++..|+.
T Consensus 254 -------~~~~~~~i~~~g~~~l~~l~~li~~~d~as~yLA~~~g~dP~~~~~i~~lk~~ 306 (308)
T TIGR02128 254 -------LGVVFISIYSRGNSLLARILSLIHLAGYVSVKLAELRGVDPEPVPPIDKLKRR 306 (308)
T ss_pred -------hCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccccHHHHHHHh
Confidence 145667777776666 7788999999999999999999999999999888874
No 18
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.31 E-value=1.3e-11 Score=107.16 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=84.0
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHH
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 100 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~ 100 (441)
+|+++|+|+|+..++.+...+... .+.++.+..... +.....+++++|++|+||+|.|++..++.+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~-------~~~~~~~~~~~~-------~~~~~~~~dl~I~iS~SG~t~e~i~~~~~a 66 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDE-------AKIPVYVVKDYT-------LPAFVDRKTLVIAVSYSGNTEETLSAVEQA 66 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhc-------cCCCEEEecCcc-------CcCCCCCCCEEEEEECCCCCHHHHHHHHHH
Confidence 488999999999888777665542 245666654322 122346889999999999999999999988
Q ss_pred HHHHHHhcCCcccCCeEEEEeCCh---hHHHHcCCCCCCeeeeccccCCcchhhhcch
Q 013562 101 REWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVG 155 (441)
Q Consensus 101 ~~~l~~~~g~~~~~~~~vavT~~~---~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vG 155 (441)
++ + +.++|+||++. +++.++|.. ++++|++.+||+|+|.-+-
T Consensus 67 ~~----~------g~~iI~IT~~~~l~~~~~~~~~~---~~~~p~~~~~r~s~~~~~~ 111 (119)
T cd05017 67 KE----R------GAKIVAITSGGKLLEMAREHGVP---VIIIPKGLQPRAAFPYLFT 111 (119)
T ss_pred HH----C------CCEEEEEeCCchHHHHHHHcCCc---EEECCCCCCCceeHHHHHH
Confidence 76 3 56899999764 467777888 8999999999999998764
No 19
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=98.17 E-value=2.6e-05 Score=79.77 Aligned_cols=101 Identities=10% Similarity=0.032 Sum_probs=69.9
Q ss_pred CCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHH
Q 013562 17 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLN 96 (441)
Q Consensus 17 ~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~ 96 (441)
+++++|+++|+|+|+.....+...+... .+.++.+. .+ ..+.........+++++|++|+||.|.||+..
T Consensus 42 ~~~~~I~~~g~GsS~~aa~~~~~~~~k~-------~~i~v~~~--~~-~~~~~~~~~~~~~~~lvI~iS~SGeT~e~i~a 111 (340)
T PRK11382 42 RDIDRIYFVACGSPLNAAQTAKHLADRF-------SDLQVYAI--SG-WEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKA 111 (340)
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHH-------cCCCeEEe--cc-HHHHhcCCcCCCCCCEEEEEcCCCCCHHHHHH
Confidence 4689999999999999988887666543 23344332 33 33333223223577999999999999999998
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeec
Q 013562 97 ARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFW 141 (441)
Q Consensus 97 ~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip 141 (441)
.+.+++ + +.++|+||... .+++...+ ++.+.
T Consensus 112 l~~ak~----~------Ga~~I~IT~~~~S~L~~~ad~----~l~~~ 144 (340)
T PRK11382 112 LELGRA----C------GALTAAFTKRADSPITSAAEF----SIDYQ 144 (340)
T ss_pred HHHHHH----c------CCeEEEEECCCCChHHHhCCE----EEEeC
Confidence 888876 3 56899999754 45554333 45555
No 20
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=98.13 E-value=2e-05 Score=68.40 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=73.5
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHH
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 100 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~ 100 (441)
+|+++|.|+|...+..+...+... .+.++.+. ++..+.........+++++|++|+||+|.|++..++.+
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a 70 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKE-------SKLPVFVY---NAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFA 70 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHh-------cCCceEEE---cHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 488999999998887777666542 13344333 22333333323346789999999999999999999998
Q ss_pred HHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhh
Q 013562 101 REWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSL 161 (441)
Q Consensus 101 ~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al 161 (441)
++ + +..+|+||+.. .+++...+ ++.++.+ .++..++=|+-..+
T Consensus 71 ~~----~------g~~vi~iT~~~~s~la~~ad~----~l~~~~~----~~~~~~~~~~~~~~ 115 (120)
T cd05710 71 KE----K------GATVIGLTDDEDSPLAKLADY----VIVYGFE----IDAVEEKYLLLYML 115 (120)
T ss_pred HH----c------CCeEEEEECCCCCcHHHhCCE----EEEccCC----cCccchHHHHHHHH
Confidence 87 3 46799999854 45554322 5666644 44444555444433
No 21
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=98.09 E-value=1.7e-05 Score=68.62 Aligned_cols=88 Identities=25% Similarity=0.296 Sum_probs=62.8
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHH
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 100 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~ 100 (441)
+|.++|+|+|..-...+...|... .+.++.+.. +..+...... ..+++++|++|.||.|.|++...+.+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~-------~~~~~~~~~---~~~~~~~~~~-~~~~d~~I~iS~sG~t~e~~~~~~~a 69 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERL-------AGIPVEVEA---ASEFRYRRPL-LDEDTLVIAISQSGETADTLAALRLA 69 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHh-------cCCceEEEe---hhHhhhcCCC-CCCCcEEEEEeCCcCCHHHHHHHHHH
Confidence 378999999988777776666542 124455444 3444333333 36889999999999999999999988
Q ss_pred HHHHHHhcCCcccCCeEEEEeCCh--hHHHH
Q 013562 101 REWISTALGPSAVAKHMVAVSTNL--TLVEK 129 (441)
Q Consensus 101 ~~~l~~~~g~~~~~~~~vavT~~~--~~A~~ 129 (441)
++ + +.++|+||++. .+++.
T Consensus 70 ~~----~------g~~vi~iT~~~~s~la~~ 90 (126)
T cd05008 70 KE----K------GAKTVAITNVVGSTLARE 90 (126)
T ss_pred HH----c------CCeEEEEECCCCChHHHh
Confidence 76 3 57899999864 45553
No 22
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=1.2e-05 Score=82.12 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=68.4
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~ 98 (441)
+++|+.+|+|||+-....+..++.... +.+ +..+.+..+...-.....+++++|++|+||+|.||+++++
T Consensus 39 ~~~I~~~g~GsS~~~~~~~~~~~~~~~-------~~~---~~~~~~se~~~~~~~~~~~~~lvi~~S~SG~TpE~vaa~~ 108 (340)
T COG2222 39 IDRILFVGCGSSLHAATPAKYLLEREL-------GLL---VAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAE 108 (340)
T ss_pred CcEEEEEecCchHHHHHHHHHHHHHhh-------Cce---eeeechhHHhccCccccCCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999998888887776532 233 2334444444444555678899999999999999999999
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCCh--hHHHH
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNL--TLVEK 129 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~ 129 (441)
.+++ .+.+.|++|... .+|+.
T Consensus 109 ~a~~----------~ga~~i~lT~~~dSpLa~~ 131 (340)
T COG2222 109 LAKE----------GGALTIALTNEEDSPLARA 131 (340)
T ss_pred Hhcc----------CCCeEEEEecCCCChhhhc
Confidence 8864 267899999764 35554
No 23
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=98.03 E-value=1.4e-05 Score=82.71 Aligned_cols=99 Identities=16% Similarity=0.114 Sum_probs=67.9
Q ss_pred CCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCC-CCcEEEEEECCCCCCHHHH
Q 013562 16 GKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN-PETTLVVVVSKTFTTAETM 94 (441)
Q Consensus 16 g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~-~~~TlviviSKSG~T~ETl 94 (441)
.+++++|+++|+|+|+-....+...+... .+.++......+ ........++ .+++|||.+|+||+|.||+
T Consensus 39 ~~~~~~i~~~g~GsS~~a~~~~~~~~~~~-------~~i~v~~~~~~e--~~~~~~~~~~~~~~~lvi~iSqSGeT~etv 109 (372)
T TIGR02815 39 ARENLRIVLTGAGTSAFIGDALAPWLASH-------TGLNVSAVPTTD--LVSNPRQYLDPTRPTLLVSFARSGNSPESV 109 (372)
T ss_pred hCCCCEEEEEechHHHHHHHHHHHHHHHh-------cCCCEEEEeCcc--cccccccccCCCCCeEEEEEeCCcCcHHHH
Confidence 45688999999999999998888777653 245554442111 1111122223 2579999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccCCeEEEEeCC--hhHHHHcC
Q 013562 95 LNARTLREWISTALGPSAVAKHMVAVSTN--LTLVEKFG 131 (441)
Q Consensus 95 ~~~~~~~~~l~~~~g~~~~~~~~vavT~~--~~~A~~~g 131 (441)
.+.+.+++ +. .+.+.++||.+ ..+++.-.
T Consensus 110 ~a~~~ak~----~~----~g~~~i~it~~~~s~la~~ad 140 (372)
T TIGR02815 110 AAVELADQ----LL----PECYHLVLTCNEEGALYRNAI 140 (372)
T ss_pred HHHHHHHH----hC----CCCcEEEEEcCCCCHHHHhhc
Confidence 99998887 31 14578999974 35666543
No 24
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=97.91 E-value=5.4e-05 Score=65.61 Aligned_cols=88 Identities=20% Similarity=0.222 Sum_probs=63.2
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHH
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 100 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~ 100 (441)
+|.++|.|+|..-++.+...+.. -+.++.++. |.+.+...+..+ .++.++|++|+||.|.|++...+.+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~~~d~vi~iS~sG~t~~~~~~~~~a 70 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSS--------TGTPAFFLH--PTEALHGDLGMV-TPGDVVIAISNSGETDELLNLLPHL 70 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhc--------CCCceEEcc--cchhhccccCcC-CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 58999999999877777666543 245555553 333333334444 5778899999999999999988888
Q ss_pred HHHHHHhcCCcccCCeEEEEeCCh--hHHHH
Q 013562 101 REWISTALGPSAVAKHMVAVSTNL--TLVEK 129 (441)
Q Consensus 101 ~~~l~~~~g~~~~~~~~vavT~~~--~~A~~ 129 (441)
++ + +.++|+||++. .+++.
T Consensus 71 ~~----~------g~~vi~iT~~~~s~la~~ 91 (128)
T cd05014 71 KR----R------GAPIIAITGNPNSTLAKL 91 (128)
T ss_pred HH----C------CCeEEEEeCCCCCchhhh
Confidence 76 3 57899999864 45553
No 25
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=0.00011 Score=69.56 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=72.5
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHH
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 100 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~ 100 (441)
.|||.|+|=|.+-++.+..-|.. -+.+.+||.-.+ ..+-.+.-+. +.-+|+.+|+||.|.|-+.....+
T Consensus 41 kv~V~G~GkSG~Igkk~Aa~L~s--------~G~~a~fv~p~e--a~hgdlg~i~-~~DvviaiS~SGeT~el~~~~~~a 109 (202)
T COG0794 41 KVFVTGVGKSGLIGKKFAARLAS--------TGTPAFFVGPAE--ALHGDLGMIT-PGDVVIAISGSGETKELLNLAPKA 109 (202)
T ss_pred cEEEEcCChhHHHHHHHHHHHHc--------cCCceEEecCch--hccCCccCCC-CCCEEEEEeCCCcHHHHHHHHHHH
Confidence 49999999999999998887765 357899997222 1122266664 567889999999999999988888
Q ss_pred HHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeecc
Q 013562 101 REWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 142 (441)
Q Consensus 101 ~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~ 142 (441)
++ . +..+|+||++. .+|+.-.+ ++.+|.
T Consensus 110 K~----~------g~~liaiT~~~~SsLak~aDv----vl~ip~ 139 (202)
T COG0794 110 KR----L------GAKLIAITSNPDSSLAKAADV----VLVIPV 139 (202)
T ss_pred HH----c------CCcEEEEeCCCCChHHHhcCe----EEEccC
Confidence 76 2 67899999875 47776555 466553
No 26
>PRK13938 phosphoheptose isomerase; Provisional
Probab=97.71 E-value=0.00026 Score=67.07 Aligned_cols=108 Identities=18% Similarity=0.108 Sum_probs=69.2
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChH------------HHHHHhccCCCCcEEEEEECCC
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPI------------DVAKSITGLNPETTLVVVVSKT 87 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~------------~~~~~l~~l~~~~TlviviSKS 87 (441)
..|+++|.|||++-++.+..-|.+.... ++...+...+..-++. .+.+.+...-.++.++|++|.|
T Consensus 46 ~rI~i~G~G~S~~~A~~fa~~L~~~~~~--~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~~~~~~~~DllI~iS~S 123 (196)
T PRK13938 46 ARVFMCGNGGSAADAQHFAAELTGHLIF--DRPPLGAEALHANSSHLTAVANDYDYDTVFARALEGSARPGDTLFAISTS 123 (196)
T ss_pred CEEEEEeCcHHHHHHHHHHHHcCCCccC--CcCccceEEEeCChHHHHHhhccccHHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 5799999999988777776655432110 0112233332211111 2234555556788999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeeccc
Q 013562 88 FTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDW 143 (441)
Q Consensus 88 G~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~~ 143 (441)
|+|.|++..++.+++ + +.++|++|++. .+++.-.+ ++.+|..
T Consensus 124 G~t~~vi~a~~~Ak~----~------G~~vI~iT~~~~s~La~~aD~----~l~v~~~ 167 (196)
T PRK13938 124 GNSMSVLRAAKTARE----L------GVTVVAMTGESGGQLAEFADF----LINVPSR 167 (196)
T ss_pred CCCHHHHHHHHHHHH----C------CCEEEEEeCCCCChhhhhCCE----EEEeCCC
Confidence 999999999998887 3 57899999753 45553222 4666654
No 27
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=97.70 E-value=0.00027 Score=64.11 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=70.4
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHH-------------HHHhccCCCCcEEEEEEC
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-------------AKSITGLNPETTLVVVVS 85 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~-------------~~~l~~l~~~~TlviviS 85 (441)
-+.|.++|.|+|..=++.+...+...... .+.+.++.++. .|+..+ .+.+.....++.++|++|
T Consensus 11 a~rI~~~G~G~S~~~A~~~a~~~~~~~~~--~~~g~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~~i~iS 87 (154)
T TIGR00441 11 GGKVLICGNGGSACDAQHFAAELTGRYRE--NRPGLPAIALS-ADVSHLTCVSNDYGYEDVFSRQVEALGQKGDVLLGIS 87 (154)
T ss_pred CCEEEEEeCcHHHHHHHHHHHHhhccccc--CCCCceEEecC-CcHHHHHHhhccCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 36799999999987666654433221100 12245555544 243222 222233346889999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeeccccCCc
Q 013562 86 KTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWVGGR 147 (441)
Q Consensus 86 KSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~~VGGR 147 (441)
+||.|.|++..++.+++ + +..+|+||++. .+++...+ ++.+|..--||
T Consensus 88 ~sG~t~~~~~~~~~a~~----~------g~~ii~iT~~~~s~l~~~ad~----~l~~~~~~~~~ 137 (154)
T TIGR00441 88 TSGNSKNVLKAIEAAKD----K------GMKTITLAGKDGGKMAGLADI----ELRVPHFYTPR 137 (154)
T ss_pred CCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCCchhhhCCE----EEEeCCCCcHH
Confidence 99999999999998887 3 57899999853 45553222 57777654444
No 28
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=97.69 E-value=0.00028 Score=56.65 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=57.9
Q ss_pred EEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHH-hccCCCCcEEEEEECCCCCCHHHHHHHHHH
Q 013562 22 VVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS-ITGLNPETTLVVVVSKTFTTAETMLNARTL 100 (441)
Q Consensus 22 vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~-l~~l~~~~TlviviSKSG~T~ETl~~~~~~ 100 (441)
|+++|.|+|....+.+...+... .+.++.++.. +...... +.. ..++.+++++|+||+|.|+...++.+
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~-------~~~~~~~~~~--~~~~~~~~~~~-~~~~d~~i~iS~sg~t~~~~~~~~~a 70 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLEL-------TGIEVVALIA--TELEHASLLSL-LRKGDVVIALSYSGRTEELLAALEIA 70 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcc-------cCCceEEeCC--cHHHHHHHHhc-CCCCCEEEEEECCCCCHHHHHHHHHH
Confidence 57899999988887777666542 1456666643 2222222 333 36899999999999999999988888
Q ss_pred HHHHHHhcCCcccCCeEEEEe
Q 013562 101 REWISTALGPSAVAKHMVAVS 121 (441)
Q Consensus 101 ~~~l~~~~g~~~~~~~~vavT 121 (441)
++ + +.++|+||
T Consensus 71 ~~----~------g~~ii~it 81 (87)
T cd04795 71 KE----L------GIPVIAIT 81 (87)
T ss_pred HH----c------CCeEEEEe
Confidence 76 3 56789998
No 29
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=97.68 E-value=0.00034 Score=64.63 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=71.4
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHH-------------HhccCCCCcEEEEEEC
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAK-------------SITGLNPETTLVVVVS 85 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~-------------~l~~l~~~~TlviviS 85 (441)
-++|+++|.|+|..-+.-+..-|...... .+.+++++++. -|+..+.. .+...-.++.++|++|
T Consensus 33 ~~~I~i~G~G~S~~~A~~~~~~l~~~~~~--~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~I~iS 109 (177)
T cd05006 33 GGKILICGNGGSAADAQHFAAELVKRFEK--ERPGLPAIALT-TDTSILTAIANDYGYEEVFSRQVEALGQPGDVLIGIS 109 (177)
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHhchhcc--CCCCCceEecc-CCHHHHHHHhccCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 46799999999988776665544321100 01234555554 13332222 1222236788999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeeccccCCcc
Q 013562 86 KTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWVGGRY 148 (441)
Q Consensus 86 KSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~~VGGRf 148 (441)
.||.|.||+..++.+++ + +.++|+||+.. .+++.-.+ ++.+|..--+|.
T Consensus 110 ~SG~t~~~i~~~~~ak~----~------Ga~vI~IT~~~~s~La~~aD~----~l~~~~~~~~~~ 160 (177)
T cd05006 110 TSGNSPNVLKALEAAKE----R------GMKTIALTGRDGGKLLELADI----EIHVPSDDTPRI 160 (177)
T ss_pred CCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCCchhhhCCE----EEEeCCCChHHH
Confidence 99999999999998876 3 57899999753 45544222 577776655553
No 30
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=97.66 E-value=0.00068 Score=74.46 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=64.4
Q ss_pred CCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHH
Q 013562 17 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLN 96 (441)
Q Consensus 17 ~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~ 96 (441)
++.++|+++|+|+|+.....+...+... .+.++.+... ..+...... ..+++++|++|.||+|.||+..
T Consensus 287 ~~a~~I~~~G~GsS~~aa~~a~~~~~~~-------~~~~~~~~~~---~~~~~~~~~-~~~~dlvI~iS~SG~T~e~i~a 355 (604)
T PRK00331 287 KKIDRIYIVACGTSYHAGLVAKYLIESL-------AGIPVEVEIA---SEFRYRDPV-LSPKTLVIAISQSGETADTLAA 355 (604)
T ss_pred hcCCEEEEEEeecHHHHHHHHHHHHHHH-------cCCCEEEEeh---hhhhccCCC-CCCCeEEEEEcCCCCCHHHHHH
Confidence 3478899999999987777666655432 2334443322 222222222 3688999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcC
Q 013562 97 ARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFG 131 (441)
Q Consensus 97 ~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~g 131 (441)
++.+++ + +.++|+||.+. .+++...
T Consensus 356 ~~~ak~----~------ga~~IaIT~~~~S~La~~aD 382 (604)
T PRK00331 356 LRLAKE----L------GAKTLAICNVPGSTIARESD 382 (604)
T ss_pred HHHHHH----C------CCCEEEEECCCCChhHHhcC
Confidence 998876 3 46899999753 4665543
No 31
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=97.66 E-value=0.00032 Score=60.56 Aligned_cols=104 Identities=15% Similarity=0.075 Sum_probs=69.1
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~ 98 (441)
-++|+++|.|.|..-++.+...+... .+....+.+ ..+.....+..+ .+++++|++|.||.|.|++..++
T Consensus 5 ~~~i~i~G~G~s~~~A~~~~~~l~~~-------~~~~~~~~~--~~~~~~~~~~~~-~~~d~vi~is~sg~~~~~~~~~~ 74 (131)
T PF01380_consen 5 AKRIYIYGSGSSYGVAQYAALKLQKL-------GRIVVISYE--AGEFFHGPLENL-DPDDLVIIISYSGETRELIELLR 74 (131)
T ss_dssp SSEEEEEESTHHHHHHHHHHHHHHHH-------HSSEEEEEE--HHHHHTTGGGGC-STTEEEEEEESSSTTHHHHHHHH
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHh-------cCcceeccc--hHHHhhhhcccc-cccceeEeeeccccchhhhhhhH
Confidence 47899999999987666665555332 122223322 222344546666 47799999999999999999888
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeeccccCC
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWVGG 146 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~~VGG 146 (441)
.+++ + +.++|+||+.. .+++.. +.+|.+|..-.-
T Consensus 75 ~ak~----~------g~~vi~iT~~~~~~l~~~a----d~~l~~~~~~~~ 110 (131)
T PF01380_consen 75 FAKE----R------GAPVILITSNSESPLARLA----DIVLYIPTGEES 110 (131)
T ss_dssp HHHH----T------TSEEEEEESSTTSHHHHHS----SEEEEEESSCGS
T ss_pred HHHh----c------CCeEEEEeCCCCCchhhhC----CEEEEecCCCcc
Confidence 7766 3 56789999753 455543 236777755333
No 32
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=97.65 E-value=0.00045 Score=63.92 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=65.1
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNART 99 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~ 99 (441)
++|.++|+|+|..-++.+..-|.. -+.++++++... ... -.++.++|++|.||.|.|++...+.
T Consensus 34 ~~I~i~G~G~S~~~A~~~~~~l~~--------~g~~~~~~~~~~-------~~~-~~~~D~vI~iS~sG~t~~~i~~~~~ 97 (179)
T cd05005 34 KRIFVYGAGRSGLVAKAFAMRLMH--------LGLNVYVVGETT-------TPA-IGPGDLLIAISGSGETSSVVNAAEK 97 (179)
T ss_pred CeEEEEecChhHHHHHHHHHHHHh--------CCCeEEEeCCCC-------CCC-CCCCCEEEEEcCCCCcHHHHHHHHH
Confidence 789999999998766666555532 245677764321 223 3578889999999999999998888
Q ss_pred HHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeecc
Q 013562 100 LREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 142 (441)
Q Consensus 100 ~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~ 142 (441)
+++ + +.++|+||+.. .+++...+ +|.+|.
T Consensus 98 ak~----~------g~~iI~IT~~~~s~la~~ad~----~l~~~~ 128 (179)
T cd05005 98 AKK----A------GAKVVLITSNPDSPLAKLADV----VVVIPA 128 (179)
T ss_pred HHH----C------CCeEEEEECCCCCchHHhCCE----EEEeCC
Confidence 876 3 57899999853 45553222 466554
No 33
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=97.62 E-value=0.00048 Score=63.64 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=64.8
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~ 98 (441)
-+.|.++|.|+|.+-++.+..-|.. -+++++++.... ... -.++.++|++|+||.|.|++..++
T Consensus 30 a~~I~i~G~G~S~~~A~~~~~~l~~--------~g~~~~~~~~~~-------~~~-~~~~Dv~I~iS~sG~t~~~i~~~~ 93 (179)
T TIGR03127 30 AKRIFVAGAGRSGLVGKAFAMRLMH--------LGFNVYVVGETT-------TPS-IKKGDLLIAISGSGETESLVTVAK 93 (179)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHHh--------CCCeEEEeCCcc-------cCC-CCCCCEEEEEeCCCCcHHHHHHHH
Confidence 3689999999998666555544432 245666664321 123 357889999999999999999888
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeecc
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 142 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~ 142 (441)
.+++ + +..+|+||++. .+++...+ +|.+|.
T Consensus 94 ~ak~----~------g~~ii~IT~~~~s~la~~ad~----~l~~~~ 125 (179)
T TIGR03127 94 KAKE----I------GATVAAITTNPESTLGKLADV----VVEIPA 125 (179)
T ss_pred HHHH----C------CCeEEEEECCCCCchHHhCCE----EEEeCC
Confidence 8876 3 57899999853 45554322 466554
No 34
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=97.59 E-value=0.00057 Score=75.10 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=64.1
Q ss_pred CCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHH
Q 013562 17 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLN 96 (441)
Q Consensus 17 ~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~ 96 (441)
++.++|+++|+|+|+.........+... .+..+.+.. +..+...... ..+++++|++|.||+|.||+.+
T Consensus 289 ~~~~~I~~~G~GsS~~aa~~a~~~~~~~-------~~i~~~~~~---~~~~~~~~~~-~~~~dlvI~iS~SG~T~e~v~a 357 (607)
T TIGR01135 289 KNVDRIQIVACGTSYHAGLVAKYLIERL-------AGIPVEVEI---ASEFRYRKPV-VDKDTLVIAISQSGETADTLAA 357 (607)
T ss_pred ccCCEEEEEEeechHHHHHHHHHHHHHh-------cCCCEEEec---HHHHhhcCCC-CCCCCEEEEEeCCCCCHHHHHH
Confidence 4578899999999987666665554332 234444432 2223222233 3689999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHc
Q 013562 97 ARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKF 130 (441)
Q Consensus 97 ~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~ 130 (441)
++.+++ + +..+|+||.+. .+++..
T Consensus 358 ~~~ak~----~------ga~~IaIT~~~~S~La~~a 383 (607)
T TIGR01135 358 LRLAKE----L------GAKTLGICNVPGSTLVRES 383 (607)
T ss_pred HHHHHH----c------CCcEEEEECCCCChHHhhc
Confidence 998876 3 46789999863 466553
No 35
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.38 E-value=0.00065 Score=68.43 Aligned_cols=92 Identities=16% Similarity=0.108 Sum_probs=65.4
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNART 99 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~ 99 (441)
++|.+.|.|+|+.-++-+..-|.. -+.+.++++ |+..+......+ .++.++|++|+||.|.|++..++.
T Consensus 43 ~~I~i~G~G~S~~~A~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~~~d~~i~iS~sG~t~~~~~~~~~ 111 (321)
T PRK11543 43 GKVVVSGIGKSGHIGKKIAATLAS--------TGTPAFFVH--PAEALHGDLGMI-ESRDVMLFISYSGGAKELDLIIPR 111 (321)
T ss_pred CcEEEEecChhHHHHHHHHHHHHc--------CCCceeecC--hHHHhhCCcCcc-CCCCEEEEEeCCCCcHHHHHHHHH
Confidence 479999999999877776655543 245666664 333333333333 577899999999999999999998
Q ss_pred HHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCC
Q 013562 100 LREWISTALGPSAVAKHMVAVSTNL--TLVEKFGI 132 (441)
Q Consensus 100 ~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi 132 (441)
+++ + +..+|+||+.. .+|+...+
T Consensus 112 ak~----~------g~~vI~iT~~~~s~la~~ad~ 136 (321)
T PRK11543 112 LED----K------SIALLAMTGKPTSPLGLAAKA 136 (321)
T ss_pred HHH----c------CCeEEEEECCCCChhHHhCCE
Confidence 877 3 57899999853 46655433
No 36
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=97.38 E-value=0.0012 Score=65.11 Aligned_cols=90 Identities=18% Similarity=0.149 Sum_probs=65.1
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~ 98 (441)
-++|.++|+|+|..-++-+..-|.. -+.++++. .|+..+...+..++ ++.++|++|.||.|.|++...+
T Consensus 128 a~~I~i~G~G~s~~~A~~~~~~l~~--------~g~~~~~~--~d~~~~~~~~~~~~-~~Dv~I~iS~sg~~~~~~~~~~ 196 (278)
T PRK11557 128 ARRIILTGIGASGLVAQNFAWKLMK--------IGINAVAE--RDMHALLATVQALS-PDDLLLAISYSGERRELNLAAD 196 (278)
T ss_pred CCeEEEEecChhHHHHHHHHHHHhh--------CCCeEEEc--CChHHHHHHHHhCC-CCCEEEEEcCCCCCHHHHHHHH
Confidence 3689999999997666666554443 24455544 56666666666775 5568889999999999999888
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCCh--hHHHH
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNL--TLVEK 129 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~ 129 (441)
.+++ + +..+|+||++. .+++.
T Consensus 197 ~ak~----~------ga~iI~IT~~~~s~la~~ 219 (278)
T PRK11557 197 EALR----V------GAKVLAITGFTPNALQQR 219 (278)
T ss_pred HHHH----c------CCCEEEEcCCCCCchHHh
Confidence 8876 3 57899999863 35553
No 37
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=97.34 E-value=0.002 Score=55.64 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=67.5
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNART 99 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~ 99 (441)
++|+++|.|.|..-.+.+...+.. -+..+.++++ ..........+ .+++++|++|.||.|.|++...+.
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~l~~--------~~~~~~~~~~--~~~~~~~~~~~-~~~~~~i~iS~~g~~~~~~~~~~~ 82 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLR--------LGKPVVLLSD--PHLQLMSAANL-TPGDVVIAISFSGETKETVEAAEI 82 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHHHHH--------cCCceEEecC--HHHHHHHHHcC-CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 789999999998766666666654 2456666643 33334444444 578999999999999999888777
Q ss_pred HHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeeccc
Q 013562 100 LREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDW 143 (441)
Q Consensus 100 ~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~~ 143 (441)
+++ + +.++|+||++. .+++-.. .+|.+|..
T Consensus 83 a~~----~------g~~iv~iT~~~~~~l~~~~d----~~i~~~~~ 114 (139)
T cd05013 83 AKE----R------GAKVIAITDSANSPLAKLAD----IVLLVSSE 114 (139)
T ss_pred HHH----c------CCeEEEEcCCCCChhHHhcC----EEEEcCCC
Confidence 765 3 46799999864 3443221 25666554
No 38
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=97.33 E-value=0.0014 Score=61.85 Aligned_cols=105 Identities=11% Similarity=0.161 Sum_probs=68.9
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHH-------------HHHhccCCCCcEEEEEECC
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-------------AKSITGLNPETTLVVVVSK 86 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~-------------~~~l~~l~~~~TlviviSK 86 (441)
+.|++.|.|+|.+=++.+..-+.+.... .+.+.++..+ .|+..+ .+.......++.++|++|.
T Consensus 45 ~rI~i~G~G~S~~~A~~~a~~l~~~~~~--~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~Dv~I~iS~ 120 (192)
T PRK00414 45 GKVLSCGNGGSHCDAMHFAEELTGRYRE--NRPGYPAIAI--SDVSHLSCVSNDFGYDYVFSRYVEAVGREGDVLLGIST 120 (192)
T ss_pred CEEEEEeCcHHHHHHHHHHHHhcccccC--CCCCceEEec--CcHHHHhhhhccCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 5789999999987666665444321100 1224455554 354332 3334445578899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeecc
Q 013562 87 TFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 142 (441)
Q Consensus 87 SG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~ 142 (441)
||.|.+++...+.+++ + +.++|+||.+. .+++.-.+ ++.+|.
T Consensus 121 SG~t~~~i~~~~~ak~----~------g~~iI~iT~~~~s~l~~~ad~----~l~~~~ 164 (192)
T PRK00414 121 SGNSGNIIKAIEAARA----K------GMKVITLTGKDGGKMAGLADI----EIRVPH 164 (192)
T ss_pred CCCCHHHHHHHHHHHH----C------CCeEEEEeCCCCChhHHhCCE----EEEeCC
Confidence 9999999999998877 3 57899999753 45553222 466665
No 39
>PRK15482 transcriptional regulator MurR; Provisional
Probab=97.33 E-value=0.0014 Score=65.18 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=68.3
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~ 98 (441)
-++|.+.|+|.|..-++.+..-|.. -+.++.+. .|+.........+ .++.++|++|.||.|.|++...+
T Consensus 135 A~~I~i~G~G~S~~~A~~l~~~l~~--------~g~~~~~~--~d~~~~~~~~~~~-~~~Dv~i~iS~sg~t~~~~~~~~ 203 (285)
T PRK15482 135 APFIQITGLGGSALVGRDLSFKLMK--------IGYRVACE--ADTHVQATVSQAL-KKGDVQIAISYSGSKKEIVLCAE 203 (285)
T ss_pred CCeeEEEEeChhHHHHHHHHHHHHh--------CCCeeEEe--ccHhHHHHHHhcC-CCCCEEEEEeCCCCCHHHHHHHH
Confidence 4679999999997766666655543 24455554 3554444444444 46688999999999999999998
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeecc
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 142 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~ 142 (441)
.+++ + +.++|+||+.. .+++..-+ +|.++.
T Consensus 204 ~a~~----~------g~~iI~IT~~~~s~la~~ad~----~l~~~~ 235 (285)
T PRK15482 204 AARK----Q------GATVIAITSLADSPLRRLAHF----TLDTVS 235 (285)
T ss_pred HHHH----C------CCEEEEEeCCCCCchHHhCCE----EEEcCC
Confidence 8876 3 57899999864 45554322 465554
No 40
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=97.29 E-value=0.0019 Score=61.32 Aligned_cols=109 Identities=12% Similarity=0.079 Sum_probs=69.1
Q ss_pred CeEEEEccCccchHHHHHHHHhh-cchhHHhhhCCceEEEecCCChHH-------------HHHHhccCCCCcEEEEEEC
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQ-TDLEAIECARGRQLRFLANVDPID-------------VAKSITGLNPETTLVVVVS 85 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~-~~~~~~~~~~~~~i~fv~n~Dp~~-------------~~~~l~~l~~~~TlviviS 85 (441)
..|.++|.|||+.=++-+..-|. ++.. ++.+.+...+. .|... +.+.++..-.+..+++++|
T Consensus 42 ~rI~~~G~GgSa~~A~~~a~~l~~~~~~---~r~gl~a~~l~-~d~~~~ta~and~~~~~~f~~ql~~~~~~gDvli~iS 117 (196)
T PRK10886 42 NKILCCGNGTSAANAQHFAASMINRFET---ERPSLPAIALN-TDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAIS 117 (196)
T ss_pred CEEEEEECcHHHHHHHHHHHHHhccccc---cCCCcceEEec-CcHHHHHHHhccccHHHHHHHHHHHcCCCCCEEEEEe
Confidence 67999999999876666555442 2210 12344444332 23222 2344455567888999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeeccc
Q 013562 86 KTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDW 143 (441)
Q Consensus 86 KSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~~ 143 (441)
.||+|.+.+..++.+++ + +..+|+||... .+++-.+. .+-.+.+|..
T Consensus 118 ~SG~s~~v~~a~~~Ak~----~------G~~vI~IT~~~~s~l~~l~~~-~D~~i~ip~~ 166 (196)
T PRK10886 118 TRGNSRDIVKAVEAAVT----R------DMTIVALTGYDGGELAGLLGP-QDVEIRIPSH 166 (196)
T ss_pred CCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCChhhhcccc-CCEEEEcCCC
Confidence 99999999998888876 3 57899999753 45543211 1225777754
No 41
>PRK13937 phosphoheptose isomerase; Provisional
Probab=97.27 E-value=0.0015 Score=61.25 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=59.7
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHH-------------HHHHhccCCCCcEEEEEEC
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPID-------------VAKSITGLNPETTLVVVVS 85 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~-------------~~~~l~~l~~~~TlviviS 85 (441)
-+.|.++|.|+|++-++.+..-+...... .+.+.+...+. .|+.. +...+...-.++.++|++|
T Consensus 38 a~rI~i~G~G~S~~~A~~~a~~~~~~~~~--~r~g~~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~Dl~i~iS 114 (188)
T PRK13937 38 GGKILLCGNGGSAADAQHIAAELVGRFKK--ERPALPAIALT-TDTSALTAIGNDYGFERVFSRQVEALGRPGDVLIGIS 114 (188)
T ss_pred CCEEEEEeCcHhHHHHHHHHHHhhccccC--CCCCcceEecc-CcHHHHHHHhccCCHHHHHHHHHHhhCCCCCEEEEEe
Confidence 46799999999986544332222211100 11234444442 23221 1222333346789999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHH
Q 013562 86 KTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVE 128 (441)
Q Consensus 86 KSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~ 128 (441)
.||+|.|++..++.+++ + +..+|+||+.. .+++
T Consensus 115 ~sG~t~~~~~~~~~ak~----~------g~~~I~iT~~~~s~L~~ 149 (188)
T PRK13937 115 TSGNSPNVLAALEKARE----L------GMKTIGLTGRDGGKMKE 149 (188)
T ss_pred CCCCcHHHHHHHHHHHH----C------CCeEEEEeCCCCChhHH
Confidence 99999999999998877 3 56899999753 4554
No 42
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=97.23 E-value=0.00068 Score=75.08 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=65.3
Q ss_pred CCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCc-eEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHH
Q 013562 17 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGR-QLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETML 95 (441)
Q Consensus 17 ~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~-~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~ 95 (441)
.++++|+++|.|+|+..+..+...+... .+. .+.. ..+..+.. .. ...+++++|++|+||.|.||+.
T Consensus 320 ~~~~~I~i~g~GsS~~aa~~~~~~l~~~-------~~~~~v~~---~~~s~~~~-~~-~~~~~~lvI~ISqSGeT~d~i~ 387 (640)
T PTZ00295 320 LNIKNLILVGCGTSYYAALFAASIMQKL-------KCFNTVQV---IDASELTL-YR-LPDEDAGVIFISQSGETLDVVR 387 (640)
T ss_pred hcCCEEEEEEeehHHHHHHHHHHHHHHh-------CCCCceEE---echHHhhh-hc-cCCCCCEEEEEeCCCCcHHHHH
Confidence 3678999999999999988887666542 122 2222 22333322 12 2347899999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCC
Q 013562 96 NARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGI 132 (441)
Q Consensus 96 ~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi 132 (441)
+++.+++ + +..+|+||... .+++...+
T Consensus 388 al~~ak~----~------Ga~~IaITn~~~S~La~~ad~ 416 (640)
T PTZ00295 388 ALNLADE----L------NLPKISVVNTVGSLIARSTDC 416 (640)
T ss_pred HHHHHHH----C------CCCEEEEECCCCChhHHhcCE
Confidence 9998876 3 46799999754 46665433
No 43
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=97.22 E-value=0.0057 Score=60.87 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=66.8
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~ 98 (441)
-+.|.+.|+|+|..-++-+..-|.. -+.++.++. |..........+ .++.++|++|.||.|.|++..++
T Consensus 140 A~~I~i~G~G~S~~~A~~l~~~l~~--------~g~~~~~~~--d~~~~~~~~~~~-~~~Dl~I~iS~sG~t~~~~~~~~ 208 (292)
T PRK11337 140 ARQRDLYGAGGSAAIARDVQHKFLR--------IGVRCQAYD--DAHIMLMSAALL-QEGDVVLVVSHSGRTSDVIEAVE 208 (292)
T ss_pred CCeEEEEEecHHHHHHHHHHHHHhh--------CCCeEEEcC--CHHHHHHHHhcC-CCCCEEEEEeCCCCCHHHHHHHH
Confidence 4678999999997655555443332 245666653 444443333444 56788899999999999999888
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcCCCCCCeeeeccc
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDW 143 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~gi~~~~~f~ip~~ 143 (441)
.+++ + +.++|+||+.. .+++.-.+ +|.+|..
T Consensus 209 ~ak~----~------g~~ii~IT~~~~s~la~~ad~----~l~~~~~ 241 (292)
T PRK11337 209 LAKK----N------GAKIICITNSYHSPIAKLADY----VICSTAQ 241 (292)
T ss_pred HHHH----C------CCeEEEEeCCCCChhHHhCCE----EEEcCCC
Confidence 8876 3 57899999864 45553222 5666643
No 44
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=97.22 E-value=0.0012 Score=73.61 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=64.4
Q ss_pred CcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHH
Q 013562 18 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 97 (441)
Q Consensus 18 ~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~ 97 (441)
++++|+++|.|+|+.....+..++... .+.++.+.. +..+...... ..+++++|++|.||+|.||+.+.
T Consensus 353 ~a~rI~ivG~GtS~~aa~~ak~~~~kl-------~~i~v~v~~---asef~~~~~~-~~~~dlvI~ISqSGeT~dtl~Al 421 (670)
T PTZ00394 353 TSRRILFIACGTSLNSCLAVRPLFEEL-------VPLPISVEN---ASDFLDRRPR-IQRDDVCFFVSQSGETADTLMAL 421 (670)
T ss_pred CCCEEEEEEechHHHHHHHHHHHHHHh-------cCCCEEEec---cchhhhhccC-CCCCCEEEEEECCcCcHHHHHHH
Confidence 568999999999998777766555442 123433322 2222222233 36889999999999999999999
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHcC
Q 013562 98 RTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFG 131 (441)
Q Consensus 98 ~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~g 131 (441)
+.+++ + +.++|+||.+. .+++...
T Consensus 422 ~~Ak~----~------Ga~tIaITn~~~S~La~~AD 447 (670)
T PTZ00394 422 QLCKE----A------GAMCVGITNVVGSSISRLTH 447 (670)
T ss_pred HHHHH----C------CCcEEEEECCCCCHHHHhcC
Confidence 98876 3 46899999753 4666543
No 45
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=97.21 E-value=0.0014 Score=65.43 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=64.0
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~ 98 (441)
-+.|+++|.|.|..-++-+...|.. -+.++..++ |+......+..+ .++.++|++|.||.|.|++..++
T Consensus 130 A~rI~~~G~g~S~~vA~~~~~~l~~--------ig~~~~~~~--d~~~~~~~~~~~-~~~Dv~i~iS~sG~t~e~i~~a~ 198 (281)
T COG1737 130 ARRIYFFGLGSSGLVASDLAYKLMR--------IGLNVVALS--DTHGQLMQLALL-TPGDVVIAISFSGYTREIVEAAE 198 (281)
T ss_pred CCeEEEEEechhHHHHHHHHHHHHH--------cCCceeEec--chHHHHHHHHhC-CCCCEEEEEeCCCCcHHHHHHHH
Confidence 4679999988886655555544443 245666664 444444456666 46788999999999999999999
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCCh--hHHHH
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNL--TLVEK 129 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~ 129 (441)
.+++ + +..+|+||+.. .+|+.
T Consensus 199 ~ak~----~------ga~vIaiT~~~~spla~~ 221 (281)
T COG1737 199 LAKE----R------GAKVIAITDSADSPLAKL 221 (281)
T ss_pred HHHH----C------CCcEEEEcCCCCCchhhh
Confidence 9987 3 67899999863 35554
No 46
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=97.20 E-value=0.00096 Score=74.40 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=64.3
Q ss_pred CCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHH
Q 013562 17 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLN 96 (441)
Q Consensus 17 ~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~ 96 (441)
+++++|+++|.|+|+.....+...+... .+.++.... . ..+...-..+ .+++++|++|.||+|.||+.+
T Consensus 361 ~~~~~I~~~G~GsS~~aa~~a~~~l~kl-------~~i~v~~~~--~-sef~~~~~~~-~~~~lvI~ISqSGeT~eti~A 429 (680)
T PLN02981 361 RRSRRIVFIGCGTSYNAALAARPILEEL-------SGVPVTMEL--A-SDLLDRQGPI-YREDTAVFVSQSGETADTLRA 429 (680)
T ss_pred hcCCEEEEEEecHHHHHHHHHHHHHHHH-------hCCCEEEec--c-hHHHhccccC-CCCCeEEEEeCCcCCHHHHHH
Confidence 4478999999999999988877766543 234444332 2 2222111223 357888899999999999999
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHHc
Q 013562 97 ARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKF 130 (441)
Q Consensus 97 ~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~~ 130 (441)
.+.+++ + +.++|+||.+. .+|+..
T Consensus 430 l~~Ak~----~------Ga~~IaITn~~~S~La~~a 455 (680)
T PLN02981 430 LEYAKE----N------GALCVGITNTVGSAISRGT 455 (680)
T ss_pred HHHHHH----C------CCcEEEEECCCCChhHhcc
Confidence 998876 3 46789999763 566543
No 47
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.09 E-value=0.0028 Score=61.95 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=59.9
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHH
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 100 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~ 100 (441)
.|.+.|.|+|.+-++-+..-|.. -+.++.+++. .+........+ .++.++|++|.||.|.|++...+.+
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~~--~~~~~~~~~~~-~~~d~~i~iS~sG~t~~~~~~~~~a 70 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFAS--------TGTPSFFLHP--TEAMHGDLGMV-EPNDVVLMISYSGESLELLNLIPHL 70 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHh--------cCCceEEeCH--hHHhhcccCCC-CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 48999999997766665544432 2456666542 22222222333 5779999999999999999999988
Q ss_pred HHHHHHhcCCcccCCeEEEEeCCh--hHHH
Q 013562 101 REWISTALGPSAVAKHMVAVSTNL--TLVE 128 (441)
Q Consensus 101 ~~~l~~~~g~~~~~~~~vavT~~~--~~A~ 128 (441)
++ + +..+|+||+.. .+++
T Consensus 71 ~~----~------g~~ii~iT~~~~s~l~~ 90 (268)
T TIGR00393 71 KR----L------SHKIIAFTGSPNSSLAR 90 (268)
T ss_pred HH----c------CCcEEEEECCCCCcccc
Confidence 87 3 56799999853 4554
No 48
>PRK13936 phosphoheptose isomerase; Provisional
Probab=96.91 E-value=0.0068 Score=57.32 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=57.1
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHH-------------HHHhccCCCCcEEEEEECC
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-------------AKSITGLNPETTLVVVVSK 86 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~-------------~~~l~~l~~~~TlviviSK 86 (441)
+.|.+.|.|+|.+-++-+..-+.+... ..+.+.+...+ +.|+... .+.+.....++-++|++|.
T Consensus 44 ~~I~i~G~G~S~~~A~~~~~~l~~r~~--~~r~g~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~a~~~~~~Dv~i~iS~ 120 (197)
T PRK13936 44 GKILACGNGGSAADAQHFSAELLNRFE--RERPSLPAIAL-TTDTSTLTAIANDYSYNEVFSKQVRALGQPGDVLLAIST 120 (197)
T ss_pred CEEEEEeCcHhHHHHHHHHHHccCccC--CCCccceeEec-CCcHHHHHHHhhcCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 679999999998655544443332110 00122333332 1222221 1222333457788999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh
Q 013562 87 TFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL 124 (441)
Q Consensus 87 SG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~ 124 (441)
||+|.|++..++.+++ + +..+|+||+..
T Consensus 121 sG~t~~~~~~~~~ak~----~------g~~iI~IT~~~ 148 (197)
T PRK13936 121 SGNSANVIQAIQAAHE----R------EMHVVALTGRD 148 (197)
T ss_pred CCCcHHHHHHHHHHHH----C------CCeEEEEECCC
Confidence 9999999999988876 3 57899999853
No 49
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.88 E-value=0.005 Score=62.27 Aligned_cols=89 Identities=12% Similarity=0.154 Sum_probs=62.1
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNART 99 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~ 99 (441)
+.|.++|.|.|+.-++.+...|.. -+.++.++.. ..........+ .++.++|++|.||.|.|++..++.
T Consensus 48 ~~I~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~~--~~~~~~~~~~~-~~~d~~I~iS~sG~t~~~~~~~~~ 116 (326)
T PRK10892 48 GKVVVMGMGKSGHIGRKMAATFAS--------TGTPSFFVHP--GEAAHGDLGMV-TPQDVVIAISNSGESSEILALIPV 116 (326)
T ss_pred CeEEEEeCcHhHHHHHHHHHHHhc--------CCceeEEeCh--HHhhccccccC-CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 469999999998877766665543 3456666532 11112223344 467799999999999999999998
Q ss_pred HHHHHHHhcCCcccCCeEEEEeCCh--hHHHH
Q 013562 100 LREWISTALGPSAVAKHMVAVSTNL--TLVEK 129 (441)
Q Consensus 100 ~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~ 129 (441)
+++ + +..+|+||++. .+|+.
T Consensus 117 ak~----~------g~~vi~iT~~~~s~la~~ 138 (326)
T PRK10892 117 LKR----L------HVPLICITGRPESSMARA 138 (326)
T ss_pred HHH----C------CCcEEEEECCCCCccccc
Confidence 876 3 56799999864 45543
No 50
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=96.77 E-value=0.0075 Score=59.52 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=56.4
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNART 99 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~ 99 (441)
+.|.++|.|+|..-+..+...+.. .+.++...+ |..........+ .++.++|++|.||.|.|++..++.
T Consensus 129 ~~I~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~~~D~vI~iS~sG~t~~~~~~~~~ 197 (284)
T PRK11302 129 KKISFFGLGASAAVAHDAQNKFFR--------FNVPVVYFD--DIVMQRMSCMNS-SDGDVVVLISHTGRTKSLVELAQL 197 (284)
T ss_pred CeEEEEEcchHHHHHHHHHHHHHh--------cCCceEecC--CHHHHHHHHHhC-CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 689999999997665544333322 234444443 322222222333 567889999999999999999988
Q ss_pred HHHHHHHhcCCcccCCeEEEEeCC
Q 013562 100 LREWISTALGPSAVAKHMVAVSTN 123 (441)
Q Consensus 100 ~~~~l~~~~g~~~~~~~~vavT~~ 123 (441)
+++ + +.++|+||+.
T Consensus 198 ak~----~------g~~vI~IT~~ 211 (284)
T PRK11302 198 ARE----N------GATVIAITSA 211 (284)
T ss_pred HHH----c------CCeEEEECCC
Confidence 876 3 5789999974
No 51
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.18 E-value=0.022 Score=63.09 Aligned_cols=89 Identities=19% Similarity=0.129 Sum_probs=61.3
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~ 98 (441)
-++|.++|+|.|..-.+.+..-|.. -+.++... .|..........+ .++.++|++|+||.|.|++..++
T Consensus 468 a~rI~i~G~G~S~~~A~~~~~~l~~--------lg~~~~~~--~d~~~~~~~~~~l-~~~DvvI~iS~sG~t~e~i~~~~ 536 (638)
T PRK14101 468 ARRIEFYGLGNSNIVAQDAHYKFFR--------FGIPTIAY--GDLYMQAASAALL-GKGDVIVAVSKSGRAPELLRVLD 536 (638)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHhc--------CCceEEEc--CCHHHHHHHHhcC-CCCCEEEEEeCCCCCHHHHHHHH
Confidence 4679999999998766665544432 23444444 3444433334455 46678899999999999999888
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCCh-hHHH
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNL-TLVE 128 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~-~~A~ 128 (441)
.+++ + +..+|+||+.. .+|+
T Consensus 537 ~Ak~----~------Ga~vIaIT~~~spLa~ 557 (638)
T PRK14101 537 VAMQ----A------GAKVIAITSSNTPLAK 557 (638)
T ss_pred HHHH----C------CCeEEEEcCCCChhHh
Confidence 8876 3 57899999853 3444
No 52
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=96.01 E-value=0.023 Score=62.04 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEE--ecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHH
Q 013562 17 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRF--LANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETM 94 (441)
Q Consensus 17 ~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~f--v~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl 94 (441)
..+++|.+++.|-|+.++.+....+.... +.++.+ .+... .--..+ .+++|+|.+|.||.|.-|+
T Consensus 281 ~~~~rI~IvAcGTSYhAglv~ky~~E~la-------~ipv~Ve~aSEfr-----y~~~~~-~~~~L~I~ISQSGETaDTl 347 (597)
T COG0449 281 REVDRIIIVACGTSYHAGLVAKYFFERLA-------KIPVEVEEASEFR-----YREPAL-NPNTLVIAISQSGETADTL 347 (597)
T ss_pred cccceEEEEECcHHHHHHHHHHHHHHHHh-------CCCeEEEeechhh-----hhccCC-CCCcEEEEEccCcccHHHH
Confidence 57899999999999988877766665432 333333 33221 112223 3559999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccCCeEEEEeCC--hhHHHHcCC
Q 013562 95 LNARTLREWISTALGPSAVAKHMVAVSTN--LTLVEKFGI 132 (441)
Q Consensus 95 ~~~~~~~~~l~~~~g~~~~~~~~vavT~~--~~~A~~~gi 132 (441)
++.+.+++ . +.+.++||.. ..++++-.+
T Consensus 348 ~ALr~ak~----~------G~~tlaItNv~gSti~Resd~ 377 (597)
T COG0449 348 AALRLAKE----Q------GAKTLAITNVPGSTIARESDH 377 (597)
T ss_pred HHHHHHHH----c------CCCEEEEEecCCChhhcccce
Confidence 99999986 3 4678999964 357776433
No 53
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=95.96 E-value=0.022 Score=50.47 Aligned_cols=88 Identities=11% Similarity=0.021 Sum_probs=52.7
Q ss_pred CcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHH-HHHH
Q 013562 18 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAE-TMLN 96 (441)
Q Consensus 18 ~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~E-Tl~~ 96 (441)
..++|+++|.|+|+.-.+-...-+... ...+.... .+.+..+--...+ .+++++|++|.||.|.| +...
T Consensus 12 ~~~~i~~~G~G~s~~~a~e~~~kl~e~-------~~i~~~~~--~~~e~~hg~~~~~-~~~~~vi~is~~g~t~~~~~~~ 81 (153)
T cd05009 12 EAKSFYVLGRGPNYGTALEGALKLKET-------SYIHAEAY--SAGEFKHGPIALV-DEGTPVIFLAPEDRLEEKLESL 81 (153)
T ss_pred ccCcEEEEcCCCCHHHHHHHHHHHHHH-------Hhhcceec--cHHHhccChhhhc-cCCCcEEEEecCChhHHHHHHH
Confidence 468999999999985554443333221 11222222 2233333233334 56888999999998776 5555
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEeCChh
Q 013562 97 ARTLREWISTALGPSAVAKHMVAVSTNLT 125 (441)
Q Consensus 97 ~~~~~~~l~~~~g~~~~~~~~vavT~~~~ 125 (441)
.+.+++ . +.++++||+..+
T Consensus 82 ~~~~~~----~------~~~vi~it~~~~ 100 (153)
T cd05009 82 IKEVKA----R------GAKVIVITDDGD 100 (153)
T ss_pred HHHHHH----c------CCEEEEEecCCc
Confidence 554443 3 578999998653
No 54
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=95.67 E-value=0.069 Score=52.70 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=35.7
Q ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHH
Q 013562 76 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 129 (441)
Q Consensus 76 ~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~ 129 (441)
.++.++|++|.||+|.+++...+.+++ + +..+|+||.+. .+++.
T Consensus 117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~~I~It~~~~s~L~~~ 162 (257)
T cd05007 117 TERDVVIGIAASGRTPYVLGALRYARA----R------GALTIGIACNPGSPLLQL 162 (257)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEECCCCChhHHh
Confidence 577778999999999999999998876 3 57799999864 45554
No 55
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=95.52 E-value=0.082 Score=53.31 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=34.9
Q ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHH
Q 013562 76 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVE 128 (441)
Q Consensus 76 ~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~ 128 (441)
.++.++|++|.||+|.+++..++.+++ + +..+|+||.+. .+++
T Consensus 126 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~~IaIT~~~~s~La~ 170 (296)
T PRK12570 126 TADDVVVGIAASGRTPYVIGALEYAKQ----I------GATTIALSCNPDSPIAK 170 (296)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEECCCCChhHH
Confidence 477889999999999999999988876 3 56789999753 3444
No 56
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=95.38 E-value=0.094 Score=52.91 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=35.0
Q ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHH
Q 013562 76 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 129 (441)
Q Consensus 76 ~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~ 129 (441)
.++.++|++|.||+|.+++...+.+++ + +..+|+||.+. .+++.
T Consensus 130 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~tI~IT~~~~s~La~~ 175 (299)
T PRK05441 130 TAKDVVVGIAASGRTPYVIGALEYARE----R------GALTIGISCNPGSPLSKE 175 (299)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEECCCCChhhHh
Confidence 466788889999999999999998887 3 57899999764 35543
No 57
>PRK02947 hypothetical protein; Provisional
Probab=95.15 E-value=0.066 Score=52.44 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=33.3
Q ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh
Q 013562 76 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL 124 (441)
Q Consensus 76 ~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~ 124 (441)
.++.++|++|.||.|.|++..++.+++ + +..+|+||+..
T Consensus 105 ~~~Dv~i~iS~sG~t~~~i~~~~~a~~----~------g~~vI~iT~~~ 143 (246)
T PRK02947 105 RPGDVLIVVSNSGRNPVPIEMALEAKE----R------GAKVIAVTSLA 143 (246)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCEEEEEcCCc
Confidence 577889999999999999998888876 3 57899999863
No 58
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=94.56 E-value=0.18 Score=50.69 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=35.4
Q ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hHHHH
Q 013562 76 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 129 (441)
Q Consensus 76 ~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~A~~ 129 (441)
.++-++|++|.||+|.+++...+.+++ + +..+|+||.+. .+++.
T Consensus 125 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~tIaIT~~~~s~La~~ 170 (291)
T TIGR00274 125 TKNDVVVGIAASGRTPYVIAGLQYARS----L------GALTISIACNPKSAASEI 170 (291)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHH----C------CCeEEEEECCCCChhHHh
Confidence 467889999999999999999888876 3 57899999764 35554
No 59
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=92.94 E-value=0.36 Score=42.84 Aligned_cols=89 Identities=12% Similarity=0.019 Sum_probs=49.4
Q ss_pred CeEEEEccCccchH-HHHHHHHhhcchhHHhhhCCceEEEecC-----------CChHHHHHHhcc--CCCCcEEEEEEC
Q 013562 20 KDVVAVGIGGSFLG-PLFVHTALQTDLEAIECARGRQLRFLAN-----------VDPIDVAKSITG--LNPETTLVVVVS 85 (441)
Q Consensus 20 ~~vV~iGiGGS~LG-~~~l~~al~~~~~~~~~~~~~~i~fv~n-----------~Dp~~~~~~l~~--l~~~~TlviviS 85 (441)
..|.++|-|||..- ..+..++.+.... .....+...+.+ .|+..-..++.. +. +.-++|++|
T Consensus 36 g~i~~~G~G~S~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gDvli~iS 111 (138)
T PF13580_consen 36 GRIFVCGNGHSAAIASHFAADLGGLFGV---NRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIR-PGDVLIVIS 111 (138)
T ss_dssp --EEEEESTHHHHHHHHHHHHHHCHSSS---TSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT---TT-EEEEEE
T ss_pred CEEEEEcCchhhhHHHHHHHHHhcCcCC---CcccccccccccchHhhhhcccchhhHHHHHHHHHcCCC-CCCEEEEEC
Confidence 35899999999644 4455555433210 011122333321 122334444444 54 455677888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeC
Q 013562 86 KTFTTAETMLNARTLREWISTALGPSAVAKHMVAVST 122 (441)
Q Consensus 86 KSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~ 122 (441)
-||+|.=++.+++.+++ + +-.+|++|+
T Consensus 112 ~SG~s~~vi~a~~~Ak~----~------G~~vIalTg 138 (138)
T PF13580_consen 112 NSGNSPNVIEAAEEAKE----R------GMKVIALTG 138 (138)
T ss_dssp SSS-SHHHHHHHHHHHH----T------T-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHHH----C------CCEEEEEeC
Confidence 99999999999998877 3 567899884
No 60
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=91.05 E-value=0.49 Score=50.76 Aligned_cols=141 Identities=15% Similarity=0.164 Sum_probs=82.4
Q ss_pred CcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHH
Q 013562 18 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 97 (441)
Q Consensus 18 ~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~ 97 (441)
+-+.++.||.|-|+-..-|.+..|... ..+++.+ .+-.+.+.+-.+-+ .+-..+.+|.||.|..|+.+.
T Consensus 354 r~rRli~iacgtSyhs~~A~R~ilEEL-------~eiPV~v--ElAsDflDR~~pif--RdDvc~FvSqSGETaDtllaL 422 (670)
T KOG1268|consen 354 RCRRLIMVACGTSYHSALATRPILEEL-------SEIPVSV--ELASDFLDRNTPIF--RDDVCFFVSQSGETADTLLAL 422 (670)
T ss_pred hccccEEEEecchHHHHHHHHHHHHHH-------hcCCeee--ehhhhhHhcCCCce--eccEEEEEecCCchHHHHHHH
Confidence 456899999999998877776666432 2333332 23333443333333 445677889999999999999
Q ss_pred HHHHHHHHHhcCCcccCCeEEEEeC--ChhHHHHcCCCCCCeeeeccccCCc----c-hhhhcchhhhhhhccCchHH--
Q 013562 98 RTLREWISTALGPSAVAKHMVAVST--NLTLVEKFGIDPNNAFAFWDWVGGR----Y-SVCSAVGVLPLSLQYGFSVV-- 168 (441)
Q Consensus 98 ~~~~~~l~~~~g~~~~~~~~vavT~--~~~~A~~~gi~~~~~f~ip~~VGGR----f-Sv~S~vGLlp~al~~G~d~~-- 168 (441)
+++++ + ++-.|.||. +..++++--.-- .+.--+.||=- | |-+ +.|+-.||.++-|.+
T Consensus 423 ~Yc~~----~------gAl~vGvtNtvGSsIsR~thCGv--HiNaGpEigvAsTKaYTSQ~--i~lvm~aL~~s~d~is~ 488 (670)
T KOG1268|consen 423 RYCKE----R------GALTVGVTNTVGSSISRETHCGV--HINAGPEIGVASTKAYTSQY--IALVMFALWMSEDRVSK 488 (670)
T ss_pred HHHHh----c------CceEEEeecccCcccccccccce--eccCCCccceeechHHHHHH--HHHHHHHHHhccchhhH
Confidence 99987 4 577899985 345666522210 12222233311 1 112 344445554564432
Q ss_pred ----HHHHHHHHHHHHHhh
Q 013562 169 ----EKFLKGAWSIDQHFI 183 (441)
Q Consensus 169 ----~~lL~GA~~m~~~~~ 183 (441)
+|+++|.+.+.+..+
T Consensus 489 ~~RR~eIi~gL~~l~~~ik 507 (670)
T KOG1268|consen 489 QERRKEIIDGLKDLPSQIK 507 (670)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 466777777666654
No 61
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=90.15 E-value=2.8 Score=38.93 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=67.7
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHH-------------HHHhccCCCCcEEEEEECC
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-------------AKSITGLNPETTLVVVVSK 86 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~-------------~~~l~~l~~~~TlviviSK 86 (441)
..|+.+|=|||+-=++-+..-|-+.+. .++++.+-.-++ +|+..+ .+.++.+-.+--+++-+|-
T Consensus 42 ~Kvl~cGNGgSaadAqHfaael~gRf~--~eR~~lpaIaLt-~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigIST 118 (176)
T COG0279 42 NKVLACGNGGSAADAQHFAAELTGRFE--KERPSLPAIALS-TDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGIST 118 (176)
T ss_pred CEEEEECCCcchhhHHHHHHHHhhHHH--hcCCCCCeeEee-cccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 459999999998666555544443321 123333433332 343322 4444555567778899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCC--hhHHHHcCCCCCCeeeeccccCCc
Q 013562 87 TFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN--LTLVEKFGIDPNNAFAFWDWVGGR 147 (441)
Q Consensus 87 SG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~--~~~A~~~gi~~~~~f~ip~~VGGR 147 (441)
|||..-.+.+++.+++ + +-++|+.|.+ ++++.-.-+ -+.+|...-+|
T Consensus 119 SGNS~nVl~Ai~~Ak~----~------gm~vI~ltG~~GG~~~~~~D~----~i~VPs~~t~R 167 (176)
T COG0279 119 SGNSKNVLKAIEAAKE----K------GMTVIALTGKDGGKLAGLLDV----EIRVPSTDTAR 167 (176)
T ss_pred CCCCHHHHHHHHHHHH----c------CCEEEEEecCCCcccccccce----EEecCCCcchh
Confidence 9999999988888876 3 5688999964 444432222 25566554333
No 62
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=80.52 E-value=5.8 Score=44.21 Aligned_cols=103 Identities=11% Similarity=0.099 Sum_probs=56.6
Q ss_pred CcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCC-CcEEEEEECCCCC-CHHHHH
Q 013562 18 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP-ETTLVVVVSKTFT-TAETML 95 (441)
Q Consensus 18 ~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~-~~TlviviSKSG~-T~ETl~ 95 (441)
..++++++|.|.++ +-|.--+|+-. +.. .++...--+.+..+--+..+++ +++.+|++|-+|. +.+++.
T Consensus 495 ~a~~i~~lGrG~~~--~iA~E~ALKLk-----Ei~--~i~ae~~~~~E~~HGp~ali~~~~~~~VI~i~~~~~~~~~~~~ 565 (640)
T PTZ00295 495 NAKSMFILGKGLGY--PIALEGALKIK-----EIT--YIHAEGFSGGALKHGPFALIDKEKNTPVILIILDDEHKELMIN 565 (640)
T ss_pred CCCcEEEEECCCCH--HHHHHHHHHHH-----HHh--hhhhhhcChHHhhhhHHHHhcCCCCCeEEEEEcCCccHHHHHH
Confidence 35789999999886 33333344321 111 1122221223333333444543 5677777777777 667777
Q ss_pred HHHHHHHHHHHhcCCcccCCeEEEEeCChhHHHHcCCCCCCeeeecc
Q 013562 96 NARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWD 142 (441)
Q Consensus 96 ~~~~~~~~l~~~~g~~~~~~~~vavT~~~~~A~~~gi~~~~~f~ip~ 142 (441)
+.+.+++ + +.++++||+......+ .. +.++.+|.
T Consensus 566 ~~~~lk~----r------ga~vi~It~~~~~l~~-~a--d~~i~ip~ 599 (640)
T PTZ00295 566 AAEQVKA----R------GAYIIVITDDEDLVKD-FA--DEIILIPS 599 (640)
T ss_pred HHHHHHH----c------CCEEEEEecCCccccc-cC--CeEEEeCC
Confidence 7776655 3 6789999986431111 11 12677776
No 63
>COG1434 Uncharacterized conserved protein [Function unknown]
Probab=70.31 E-value=41 Score=31.55 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=39.1
Q ss_pred HHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh------hHHHHcCCC
Q 013562 69 KSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGID 133 (441)
Q Consensus 69 ~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~------~~A~~~gi~ 133 (441)
+.+....-....++.--+|.+|.| |++..++++++. + -++++.||++- -.+++.|++
T Consensus 113 ~~~~~~gv~~~~i~~e~~s~~T~e---Na~~s~~~l~~~-~----~~~~ilVTs~~Hm~Ra~~~~~~~g~~ 175 (223)
T COG1434 113 RYLENLGVPAERIILEDRSRNTVE---NARFSRRLLRTQ-G----PESVILVTSPYHMPRALLLFRKLGIS 175 (223)
T ss_pred HHHHHcCCCcccEEecCCCccHHH---HHHHHHHHHHHc-C----CceEEEECCHHHHHHHHHHHHHCCCc
Confidence 444444445566777778877655 566777777765 2 47899999873 467888887
No 64
>PRK10494 hypothetical protein; Provisional
Probab=69.16 E-value=25 Score=34.76 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=45.2
Q ss_pred HHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh------hHHHHcCCCCCCee
Q 013562 65 IDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGIDPNNAF 138 (441)
Q Consensus 65 ~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~------~~A~~~gi~~~~~f 138 (441)
+.+++.+..+.-...-+++-.+|-+|.|-..+.+ +++ + .++++.||+.- ..+++.|++ +.
T Consensus 140 ~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~---~~~----~----~~~iiLVTsa~Hm~RA~~~f~~~Gl~---v~ 205 (259)
T PRK10494 140 EVGARVAQSLGVPREDIITLDLPKDTEEEAAAVK---QAI----G----DAPFLLVTSASHLPRAMIFFQQEGLN---PL 205 (259)
T ss_pred HHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHH---HHh----C----CCCEEEECCHHHHHHHHHHHHHcCCc---ee
Confidence 4456666666445555688889999888766443 322 1 24689999873 467889998 88
Q ss_pred eecccc
Q 013562 139 AFWDWV 144 (441)
Q Consensus 139 ~ip~~V 144 (441)
+.|-+.
T Consensus 206 p~Ptd~ 211 (259)
T PRK10494 206 PAPANQ 211 (259)
T ss_pred ecCCcc
Confidence 888653
No 65
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=67.90 E-value=32 Score=33.78 Aligned_cols=59 Identities=14% Similarity=0.368 Sum_probs=42.9
Q ss_pred hHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh------hHHHHcCCC
Q 013562 64 PIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGID 133 (441)
Q Consensus 64 p~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~------~~A~~~gi~ 133 (441)
+..+++.|-..--...-+++=.+|++|.|++...+...+ .++++.||+.- -+|+++|++
T Consensus 99 a~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~-----------~~~~iIVTq~fHm~RA~~ia~~~Gi~ 163 (239)
T PRK10834 99 PMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFD-----------TNDFIIITQRFHCERALFIALHMGIQ 163 (239)
T ss_pred HHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhC-----------CCCEEEECCHHHHHHHHHHHHHcCCc
Confidence 446676666554455668888999999999876665532 24689999862 478999998
No 66
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=67.08 E-value=1e+02 Score=31.82 Aligned_cols=96 Identities=21% Similarity=0.300 Sum_probs=55.2
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEECC-----CCCCHHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSK-----TFTTAET 93 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviSK-----SG~T~ET 93 (441)
-.|.|||+||. |..++-..+.... . .+.|+. |+|-..+. .....+.+-+=-+. -|.-.|.
T Consensus 12 ~~I~VIGvGg~--G~n~v~~m~~~~~------~--gve~ia~nTD~q~L~----~~~a~~ki~iG~~~t~GlGaGa~P~v 77 (338)
T COG0206 12 ARIKVIGVGGA--GGNAVNRMIEEGV------E--GVEFIAINTDAQALK----SSKADRKILIGESITRGLGAGANPEV 77 (338)
T ss_pred ceEEEEEeCCc--chHHHHHHHHhhh------C--ceEEEEeccCHHHHh----ccccCeEEEeccceeeccCCCCCcHH
Confidence 46899999998 7777766554421 1 255654 89966553 33323333333221 2344444
Q ss_pred H-HHHHHHHHHHHHhcCCcccCCeEEEEeCC-------------hhHHHHcCCC
Q 013562 94 M-LNARTLREWISTALGPSAVAKHMVAVSTN-------------LTLVEKFGID 133 (441)
Q Consensus 94 l-~~~~~~~~~l~~~~g~~~~~~~~vavT~~-------------~~~A~~~gi~ 133 (441)
- .+++..++.+.+.+. +.+++.||+. .+.|++.|+.
T Consensus 78 G~~aAee~~~~I~~~l~----g~dmvfitaG~GGGTGtGaaPVvakiake~g~l 127 (338)
T COG0206 78 GRAAAEESIEEIEEALK----GADMVFVTAGMGGGTGTGAAPVVAEIAKELGAL 127 (338)
T ss_pred HHHHHHHHHHHHHHHhc----cCCeEEEEeeecCCccccccHHHHHHHHhcCCc
Confidence 3 344555555555532 4568888853 2688888887
No 67
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=66.95 E-value=93 Score=27.65 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=48.2
Q ss_pred EEEEccCc--cchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEEC-CCCCCHHHHHHH
Q 013562 22 VVAVGIGG--SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVS-KTFTTAETMLNA 97 (441)
Q Consensus 22 vV~iGiGG--S~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviS-KSG~T~ETl~~~ 97 (441)
||+.-+|| -.+|..++...|.. .+.+++++. ++.++.+.+.....+++ +|.+| .++++.+ .+
T Consensus 6 vl~~~~~gD~H~lG~~iv~~~lr~--------~G~eVi~LG~~vp~e~i~~~a~~~~~d---~V~lS~~~~~~~~---~~ 71 (137)
T PRK02261 6 VVLGVIGADCHAVGNKILDRALTE--------AGFEVINLGVMTSQEEFIDAAIETDAD---AILVSSLYGHGEI---DC 71 (137)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC---EEEEcCccccCHH---HH
Confidence 44444553 47888888877764 478999996 89999998888876654 44444 5554443 34
Q ss_pred HHHHHHHHHh
Q 013562 98 RTLREWISTA 107 (441)
Q Consensus 98 ~~~~~~l~~~ 107 (441)
+.+.+.|++.
T Consensus 72 ~~~~~~L~~~ 81 (137)
T PRK02261 72 RGLREKCIEA 81 (137)
T ss_pred HHHHHHHHhc
Confidence 5566666654
No 68
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=64.44 E-value=43 Score=29.60 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=30.2
Q ss_pred ChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh------hHHHHcCCC
Q 013562 63 DPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGID 133 (441)
Q Consensus 63 Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~------~~A~~~gi~ 133 (441)
..+.+++.+....-....|++-.+|-+|.| |++.+++++.+. | -++++.||++- .++++.+.+
T Consensus 55 ea~~~~~~l~~~gvp~~~I~~e~~s~~T~e---na~~~~~~~~~~-~----~~~iilVT~~~H~~Ra~~~~~~~~~~ 123 (155)
T PF02698_consen 55 EAEAMRDYLIELGVPEERIILEPKSTNTYE---NARFSKRLLKER-G----WQSIILVTSPYHMRRARMIFRKVGPD 123 (155)
T ss_dssp HHHHHHHHHHHT---GGGEEEE----SHHH---HHHHHHHHHHT--S----SS-EEEE--CCCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcccchheeEccCCCCCHHH---HHHHHHHHHHhh-c----CCeEEEECCHHHHHHHHHHHHHhCCC
Confidence 345666766554434455667777777555 555666666654 2 26899999873 345565554
No 69
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=63.73 E-value=95 Score=26.64 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=53.2
Q ss_pred cchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Q 013562 30 SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTAL 108 (441)
Q Consensus 30 S~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~ 108 (441)
-.+|..++...|.. .+.+++++. ++.++.+.+...+.++. +|++|-+- .++...++.+.+.|+++
T Consensus 12 H~lG~~~~~~~l~~--------~G~~vi~lG~~vp~e~~~~~a~~~~~d---~V~iS~~~--~~~~~~~~~~~~~L~~~- 77 (122)
T cd02071 12 HDRGAKVIARALRD--------AGFEVIYTGLRQTPEEIVEAAIQEDVD---VIGLSSLS--GGHMTLFPEVIELLREL- 77 (122)
T ss_pred hHHHHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC---EEEEcccc--hhhHHHHHHHHHHHHhc-
Confidence 36888888888764 578899986 78889888888776554 55554442 23344456666666654
Q ss_pred CCcccCCeEEEEeC--C---hhHHHHcCCC
Q 013562 109 GPSAVAKHMVAVST--N---LTLVEKFGID 133 (441)
Q Consensus 109 g~~~~~~~~vavT~--~---~~~A~~~gi~ 133 (441)
+.. +-.+.+-. . .+..++.|++
T Consensus 78 ~~~---~i~i~~GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 78 GAG---DILVVGGGIIPPEDYELLKEMGVA 104 (122)
T ss_pred CCC---CCEEEEECCCCHHHHHHHHHCCCC
Confidence 221 11233332 1 2345688987
No 70
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=62.49 E-value=62 Score=38.01 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=51.5
Q ss_pred HHHHHHhcCCCCcEEEeeChhhhhhHHHHHhHhhhhhCCCccccCCcccccccccccCCCCCCCCCCccceeeeeccccc
Q 013562 198 LSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIP 277 (441)
Q Consensus 198 l~~~~~~~~g~~~~~l~~Y~~~L~~~~~w~qQL~aESlGK~~~~~G~~~~~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~ 277 (441)
++.+..........+++.|-++....-.++|.+=..---+. |.++. + +-|+.-.||-+|++..||..-
T Consensus 812 l~~~~~~~~~~~y~a~~ay~~~~~~~~~~~~~~r~~~~~~~----~~~~~-------~-~~gPrflhstgq~~kggp~~G 879 (948)
T PRK09533 812 LKAHLGRVKAGDYVALLAYIERNPAHIAALQAIRLAVRDAR----KVATC-------L-EFGPRFLHSTGQAYKGGPDSG 879 (948)
T ss_pred HHHHHhcCCCCCeEEEEEecCCccchHHHHHHHHHHHHHhc----CCCee-------e-eecCccccccCccccCCCCCc
Confidence 34333344566899999999998766677776644332221 22221 1 457899999999999997532
Q ss_pred eeEEEeec-cCCccccccc
Q 013562 278 CDFIGVVK-SQQPVYLKGE 295 (441)
Q Consensus 278 ~dfi~~~~-~~~~~~~~~~ 295 (441)
+ |+.+.. ...++.+|+.
T Consensus 880 v-flqit~~~~~dl~vpg~ 897 (948)
T PRK09533 880 V-FLQITADDAADLPVPGQ 897 (948)
T ss_pred e-EEEEecCccccCCCCCC
Confidence 2 554433 3344545553
No 71
>PRK13018 cell division protein FtsZ; Provisional
Probab=61.62 E-value=1.1e+02 Score=32.01 Aligned_cols=135 Identities=18% Similarity=0.196 Sum_probs=70.0
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEEC---C---CCCCHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVS---K---TFTTAE 92 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviS---K---SG~T~E 92 (441)
-.|.|||+||. |..++-..+... -..+.|+. |+|...+. ... ...-+.+-. + +|+..|
T Consensus 29 ~~I~ViGvGGa--G~N~v~~m~~~~--------~~~v~~iaiNTD~q~L~----~~~-a~~ki~iG~~~t~G~GaG~dp~ 93 (378)
T PRK13018 29 PKIVVVGCGGA--GNNTINRLYEIG--------IEGAETIAINTDAQHLA----MIK-ADKKILIGKSLTRGLGAGGDPE 93 (378)
T ss_pred CeEEEEEeCCc--HHHHHHHHHHcC--------CCCceEEEEECCHHHHh----cCC-CCcEEecCCccCCCCCCCCChH
Confidence 36899999998 778876655431 12345554 78975554 332 233344422 2 466676
Q ss_pred HHHH-HHHHHHHHHHhcCCcccCCeEEEEeCC-------------hhHHHHcCCCCCCeeeeccccCCcchhhhcchhhh
Q 013562 93 TMLN-ARTLREWISTALGPSAVAKHMVAVSTN-------------LTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLP 158 (441)
Q Consensus 93 Tl~~-~~~~~~~l~~~~g~~~~~~~~vavT~~-------------~~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp 158 (441)
.-.. +....+.+++.+. +..+|.||.. .++|+++|+. ++ .+..+|
T Consensus 94 ~G~~aaee~~d~I~~~le----~~D~vfI~aGLGGGTGSGaapvIa~iake~g~l---tv--------------~vVt~P 152 (378)
T PRK13018 94 VGRKAAEESRDEIKEVLK----GADLVFVTAGMGGGTGTGAAPVVAEIAKEQGAL---VV--------------GVVTKP 152 (378)
T ss_pred HHHHHHHHHHHHHHHHhc----CCCEEEEEeeccCcchhhHHHHHHHHHHHcCCC---eE--------------EEEEcC
Confidence 5433 2334455555442 2334555532 1577877654 22 233456
Q ss_pred hhhccCchHHHHHHHHHHHHHHHhhCCCCCCCH
Q 013562 159 LSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNI 191 (441)
Q Consensus 159 ~al~~G~d~~~~lL~GA~~m~~~~~~~~~~~N~ 191 (441)
...- |....+....|.+++.++....-+-+|-
T Consensus 153 f~~E-G~~r~~nA~~gL~~L~e~~D~vividNd 184 (378)
T PRK13018 153 FKFE-GRARMQKAEEGIERLREAADTVIVIDNN 184 (378)
T ss_pred cccc-cHhHHHHHHHHHHHHHHhCCEEEEEecH
Confidence 5543 4443445556666666554332223443
No 72
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=59.21 E-value=11 Score=32.26 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=30.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCChhHHHHcCCC
Q 013562 80 LVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGID 133 (441)
Q Consensus 80 lviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~~~A~~~gi~ 133 (441)
+++|.|+||.|.--++.|| ...-++++|.+.+.+++..+-
T Consensus 19 ~Ivv~T~sG~ta~~isk~R--------------P~~pIiavt~~~~~~r~l~l~ 58 (117)
T PF02887_consen 19 AIVVFTESGRTARLISKYR--------------PKVPIIAVTPNESVARQLSLY 58 (117)
T ss_dssp EEEEE-SSSHHHHHHHHT---------------TSSEEEEEESSHHHHHHGGGS
T ss_pred EEEEECCCchHHHHHHhhC--------------CCCeEEEEcCcHHHHhhhhcc
Confidence 7999999999887765333 246799999999999886554
No 73
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=58.46 E-value=86 Score=27.44 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=37.5
Q ss_pred HHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh------hHHHHcCC
Q 013562 65 IDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGI 132 (441)
Q Consensus 65 ~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~------~~A~~~gi 132 (441)
+.+.+.+....-...-+++-.+|-+|.| |+..+++++.+.. .++++.||++- ..++..+.
T Consensus 54 ~~m~~~l~~~gv~~~~I~~e~~s~~T~e---na~~~~~~~~~~~-----~~~i~lVTs~~H~~Ra~~~~~~~~~ 119 (150)
T cd06259 54 EAMARYLIELGVPAEAILLEDRSTNTYE---NARFSAELLRERG-----IRSVLLVTSAYHMPRALLIFRKAGL 119 (150)
T ss_pred HHHHHHHHHcCCCHHHeeecCCCCCHHH---HHHHHHHHHHhcC-----CCeEEEECCHHHHHHHHHHHHHcCC
Confidence 4556666544333445677778888555 4566677776642 26899999874 35566554
No 74
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=57.43 E-value=82 Score=31.17 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=91.1
Q ss_pred CCCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccC--CCCcEEEEEECCCCCCHH
Q 013562 15 TGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGL--NPETTLVVVVSKTFTTAE 92 (441)
Q Consensus 15 ~g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l--~~~~TlviviSKSG~T~E 92 (441)
.|.+..||++-|--|+ |--.+..++.... ...+.+++-++.-|-..+.+++..+ .|.+.++++-=-||..-|
T Consensus 48 ~G~pannvLL~G~rGt--GKSSlVkall~~y----~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d 121 (249)
T PF05673_consen 48 QGLPANNVLLWGARGT--GKSSLVKALLNEY----ADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGD 121 (249)
T ss_pred cCCCCcceEEecCCCC--CHHHHHHHHHHHH----hhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCc
Confidence 4678899999988877 3333333333322 1246777777654444444444332 368999999999999888
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh-hH-----HHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCch
Q 013562 93 TMLNARTLREWISTALGPSAVAKHMVAVSTNL-TL-----VEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFS 166 (441)
Q Consensus 93 Tl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~-~~-----A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d 166 (441)
+ .|+.++..|+-.+ ...+..-++..|+|. .+ .+..+ ....-+.-.+.+--+-|+.-.+| |-+.+- -.|
T Consensus 122 ~--~yk~LKs~LeGgl-e~~P~NvliyATSNRRHLv~E~~~d~~~-~~~~eih~~d~~eEklSLsDRFG-L~l~F~-~~~ 195 (249)
T PF05673_consen 122 T--EYKALKSVLEGGL-EARPDNVLIYATSNRRHLVPESFSDRED-IQDDEIHPSDTIEEKLSLSDRFG-LWLSFY-PPD 195 (249)
T ss_pred H--HHHHHHHHhcCcc-ccCCCcEEEEEecchhhccchhhhhccC-CCccccCcchHHHHHHhHHHhCC-cEEEec-CCC
Confidence 7 5677777665322 222344456677774 22 22222 11123444566777788888889 456664 677
Q ss_pred HHHHHHHHHHHHH
Q 013562 167 VVEKFLKGAWSID 179 (441)
Q Consensus 167 ~~~~lL~GA~~m~ 179 (441)
-++.|+=.+...
T Consensus 196 -q~~YL~IV~~~~ 207 (249)
T PF05673_consen 196 -QEEYLAIVRHYA 207 (249)
T ss_pred -HHHHHHHHHHHH
Confidence 578887444433
No 75
>PLN02828 formyltetrahydrofolate deformylase
Probab=57.09 E-value=23 Score=35.34 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=34.0
Q ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEE-EeCC--------hhHHHHcCCCCCCeeeecc
Q 013562 76 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVA-VSTN--------LTLVEKFGIDPNNAFAFWD 142 (441)
Q Consensus 76 ~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~va-vT~~--------~~~A~~~gi~~~~~f~ip~ 142 (441)
.+.-+.|.+|++|+..+-+.... +.|. ....+++ ||.+ .+.|+++||| ++.+|.
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~--------~~g~--l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP---~~~~~~ 131 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRW--------QDGR--LPVDITCVISNHERGPNTHVMRFLERHGIP---YHYLPT 131 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhh--------hcCC--CCceEEEEEeCCCCCCCchHHHHHHHcCCC---EEEeCC
Confidence 34568889999999988874321 1122 1234555 4543 2579999999 665654
No 76
>PRK09330 cell division protein FtsZ; Validated
Probab=57.04 E-value=1e+02 Score=32.40 Aligned_cols=95 Identities=22% Similarity=0.313 Sum_probs=52.0
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEECC------CCCCHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSK------TFTTAE 92 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviSK------SG~T~E 92 (441)
-.|.|||+||. |..++-....... ..+.|+. |+|...+. ... ...-+.+-.+ +|+..|
T Consensus 14 ~~IkViGvGG~--G~Nav~~m~~~~~--------~~v~fia~NTD~q~L~----~~~-a~~ki~lG~~~t~GlGaG~~pe 78 (384)
T PRK09330 14 AVIKVIGVGGG--GGNAVNRMIEEGI--------QGVEFIAANTDAQALL----KSK-APVKIQLGEKLTRGLGAGANPE 78 (384)
T ss_pred CeEEEEEECCc--HHHHHHHHHHcCC--------CCceEEEEeCcHHHHh----cCC-CCeEEEcCCcccccCCCCCCHH
Confidence 36999999998 7777766554311 2344543 78976543 333 2333333322 355555
Q ss_pred HHH-HHHHHHHHHHHhcCCcccCCeEEEEeCC-------------hhHHHHcCCC
Q 013562 93 TML-NARTLREWISTALGPSAVAKHMVAVSTN-------------LTLVEKFGID 133 (441)
Q Consensus 93 Tl~-~~~~~~~~l~~~~g~~~~~~~~vavT~~-------------~~~A~~~gi~ 133 (441)
.-. ++...++.+++.+. +..+|.||.+ .++|+++|+.
T Consensus 79 ~G~~aaee~~e~I~~~l~----~~D~vfI~AGmGGGTGTGaapvIA~iake~g~l 129 (384)
T PRK09330 79 VGRKAAEESREEIREALE----GADMVFITAGMGGGTGTGAAPVVAEIAKELGIL 129 (384)
T ss_pred HHHHHHHHHHHHHHHHHc----CCCEEEEEecCCCcccHHHHHHHHHHHHHcCCc
Confidence 432 23334444444431 3566777743 1678888866
No 77
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=56.69 E-value=68 Score=32.31 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=33.6
Q ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEE-EeCCh---hHHHHcCCCCCCeeeecc
Q 013562 78 TTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVA-VSTNL---TLVEKFGIDPNNAFAFWD 142 (441)
Q Consensus 78 ~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~va-vT~~~---~~A~~~gi~~~~~f~ip~ 142 (441)
.-+.|.+|++|+..+.+..+. + -|. ....+++ ||++. +.|+++||| ++.++.
T Consensus 94 ~kiavl~Sg~g~nl~al~~~~------~--~~~--l~~~i~~visn~~~~~~~A~~~gIp---~~~~~~ 149 (289)
T PRK13010 94 PKVVIMVSKFDHCLNDLLYRW------R--MGE--LDMDIVGIISNHPDLQPLAVQHDIP---FHHLPV 149 (289)
T ss_pred eEEEEEEeCCCccHHHHHHHH------H--CCC--CCcEEEEEEECChhHHHHHHHcCCC---EEEeCC
Confidence 357889999999988875332 1 122 1344555 45443 689999999 776653
No 78
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=56.26 E-value=99 Score=32.02 Aligned_cols=38 Identities=24% Similarity=0.477 Sum_probs=24.4
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEe-cCCChHHHH
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFL-ANVDPIDVA 68 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv-~n~Dp~~~~ 68 (441)
.|.+||+||. |..++-...... -..+.|+ -|+|...+.
T Consensus 19 ~i~viGvGg~--G~n~v~~l~~~~--------~~~~~~iainTD~~~L~ 57 (349)
T TIGR00065 19 KIKVIGVGGG--GNNTVNRMLEEG--------VEGVEFIAINTDAQHLK 57 (349)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcC--------CCceEEEEEECCHHHHh
Confidence 5999999998 777776555431 1234454 377975543
No 79
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=55.97 E-value=1.2e+02 Score=28.54 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=64.4
Q ss_pred CeEEEEccCcc--chHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHH
Q 013562 20 KDVVAVGIGGS--FLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLN 96 (441)
Q Consensus 20 ~~vV~iGiGGS--~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~ 96 (441)
..||+.-++|- .+|.+++...|+. .+.+++++. ++.++.+.+.....+|. +|.+|-|-++. +..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~--------~G~~vi~LG~~vp~e~~v~~~~~~~pd---~v~lS~~~~~~--~~~ 151 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRA--------NGFDVIDLGRDVPIDTVVEKVKKEKPL---MLTGSALMTTT--MYG 151 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHh--------CCcEEEECCCCCCHHHHHHHHHHcCCC---EEEEccccccC--HHH
Confidence 35655555543 7899999888865 468999985 89999999998887765 67776653332 334
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEeC---ChhHHHHcCCC
Q 013562 97 ARTLREWISTALGPSAVAKHMVAVST---NLTLVEKFGID 133 (441)
Q Consensus 97 ~~~~~~~l~~~~g~~~~~~~~vavT~---~~~~A~~~gi~ 133 (441)
++.+.+.+++....+ +--|.|.. +.+.+++.|.+
T Consensus 152 ~~~~i~~l~~~~~~~---~v~i~vGG~~~~~~~~~~~gad 188 (197)
T TIGR02370 152 QKDINDKLKEEGYRD---SVKFMVGGAPVTQDWADKIGAD 188 (197)
T ss_pred HHHHHHHHHHcCCCC---CCEEEEEChhcCHHHHHHhCCc
Confidence 566777676653221 11233333 34788888876
No 80
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=55.51 E-value=3.5 Score=38.58 Aligned_cols=63 Identities=19% Similarity=0.120 Sum_probs=34.4
Q ss_pred EEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCC
Q 013562 24 AVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTT 90 (441)
Q Consensus 24 ~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T 90 (441)
+++||+|.=|++++.+.|.... ...+..+.++-.+++.....+.+.|+....+=|..-+.|..
T Consensus 1 vV~IGaSaGG~~al~~il~~lp----~~~~~~ivivqH~~~~~~~~l~~~L~~~t~l~V~~a~~g~~ 63 (182)
T PF01339_consen 1 VVAIGASAGGPEALQEILSALP----ADFPAAIVIVQHMPPGFTSSLAERLARHTSLPVREAEDGEP 63 (182)
T ss_dssp EEEEEE-TTHHHHHCCCHCCS-----TTSSSEEEEEE---TTHHHHHHHHHHHHSSSEEEE--TT-B
T ss_pred CEEEEeCCCCHHHHHHHHHHhc----cCCCceEEEEECCCCCcchHHHHHHhCcCCCeEEEcCCCCE
Confidence 5789999999999988887643 11235777777777765544444444334444444444443
No 81
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=54.94 E-value=1.1e+02 Score=29.32 Aligned_cols=83 Identities=24% Similarity=0.337 Sum_probs=46.6
Q ss_pred eEEEEccC--ccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHH
Q 013562 21 DVVAVGIG--GSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 21 ~vV~iGiG--GS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~ 98 (441)
.++++|.| |+.+.-. |.. .+-.+..++ .|++...+.+.. ...+.+++. +++..++|.
T Consensus 2 ~iiIiG~G~vG~~va~~-----L~~--------~g~~Vv~Id-~d~~~~~~~~~~--~~~~~~v~g--d~t~~~~L~--- 60 (225)
T COG0569 2 KIIIIGAGRVGRSVARE-----LSE--------EGHNVVLID-RDEERVEEFLAD--ELDTHVVIG--DATDEDVLE--- 60 (225)
T ss_pred EEEEECCcHHHHHHHHH-----HHh--------CCCceEEEE-cCHHHHHHHhhh--hcceEEEEe--cCCCHHHHH---
Confidence 58898888 5554333 322 234666776 577777665542 123444444 556666653
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCCh-------hHHHH-cCCC
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNL-------TLVEK-FGID 133 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~-------~~A~~-~gi~ 133 (441)
+.|-+. ...+||+|.+. .+|.+ +|++
T Consensus 61 --------~agi~~-aD~vva~t~~d~~N~i~~~la~~~~gv~ 94 (225)
T COG0569 61 --------EAGIDD-ADAVVAATGNDEVNSVLALLALKEFGVP 94 (225)
T ss_pred --------hcCCCc-CCEEEEeeCCCHHHHHHHHHHHHhcCCC
Confidence 233332 46788888763 24544 7777
No 82
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=53.92 E-value=81 Score=26.12 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=35.3
Q ss_pred CceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh---hHHHH
Q 013562 53 GRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL---TLVEK 129 (441)
Q Consensus 53 ~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~---~~A~~ 129 (441)
+.++++-|-.|++.+.++ .+...+++++.. .+..+++.....+++ .. + ..++++..... +..++
T Consensus 41 ~~~~i~gd~~~~~~l~~a--~i~~a~~vv~~~---~~d~~n~~~~~~~r~----~~-~---~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 41 GVEVIYGDATDPEVLERA--GIEKADAVVILT---DDDEENLLIALLARE----LN-P---DIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp TSEEEES-TTSHHHHHHT--TGGCESEEEEES---SSHHHHHHHHHHHHH----HT-T---TSEEEEEESSHHHHHHHHH
T ss_pred ccccccccchhhhHHhhc--CccccCEEEEcc---CCHHHHHHHHHHHHH----HC-C---CCeEEEEECCHHHHHHHHH
Confidence 345555566666555443 233344444433 355666665555554 22 1 35777777653 46677
Q ss_pred cCCC
Q 013562 130 FGID 133 (441)
Q Consensus 130 ~gi~ 133 (441)
.|++
T Consensus 108 ~g~d 111 (116)
T PF02254_consen 108 AGAD 111 (116)
T ss_dssp TT-S
T ss_pred CCcC
Confidence 8876
No 83
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=53.85 E-value=1.4e+02 Score=27.04 Aligned_cols=99 Identities=18% Similarity=0.241 Sum_probs=64.0
Q ss_pred CCCcCeEEEE--ccCccchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEECCCCCCHH
Q 013562 16 GKVLKDVVAV--GIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAE 92 (441)
Q Consensus 16 g~~~~~vV~i--GiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~E 92 (441)
|++.+ |++. |.=|=+.|.+.+.++|.. .+.+++... ...|+++.+.. ++..--.+.|+|.+|.=.+
T Consensus 10 g~rpr-vlvak~GlDgHd~gakvia~~l~d--------~GfeVi~~g~~~tp~e~v~aA--~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 10 GARPR-VLVAKLGLDGHDRGAKVIARALAD--------AGFEVINLGLFQTPEEAVRAA--VEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred CCCce-EEEeccCccccccchHHHHHHHHh--------CCceEEecCCcCCHHHHHHHH--HhcCCCEEEEEeccchHHH
Confidence 44544 4444 444889999999999986 467887775 56677665554 3344557888888888665
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCeEEEEeCC------hhHHHHcCCC
Q 013562 93 TMLNARTLREWISTALGPSAVAKHMVAVSTN------LTLVEKFGID 133 (441)
Q Consensus 93 Tl~~~~~~~~~l~~~~g~~~~~~~~vavT~~------~~~A~~~gi~ 133 (441)
.. ..+++.|.+++ ..++.++..+ ....++.|+.
T Consensus 79 l~---~~lve~lre~G-----~~~i~v~~GGvip~~d~~~l~~~G~~ 117 (143)
T COG2185 79 LV---PGLVEALREAG-----VEDILVVVGGVIPPGDYQELKEMGVD 117 (143)
T ss_pred HH---HHHHHHHHHhC-----CcceEEeecCccCchhHHHHHHhCcc
Confidence 54 56677677664 2345544332 1456778887
No 84
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=53.85 E-value=66 Score=27.17 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=54.7
Q ss_pred cchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEECCC-CCCHHHHHHHHHHHHHHHHh
Q 013562 30 SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKT-FTTAETMLNARTLREWISTA 107 (441)
Q Consensus 30 S~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviSKS-G~T~ETl~~~~~~~~~l~~~ 107 (441)
-.+|.+++...|+. .+.++.++. ++.++.+.+.+...++. +|++|-| +.+.+.+ +.+.+.+++.
T Consensus 12 H~lG~~~~~~~l~~--------~G~~V~~lg~~~~~~~l~~~~~~~~pd---vV~iS~~~~~~~~~~---~~~i~~l~~~ 77 (119)
T cd02067 12 HDIGKNIVARALRD--------AGFEVIDLGVDVPPEEIVEAAKEEDAD---AIGLSGLLTTHMTLM---KEVIEELKEA 77 (119)
T ss_pred hhHHHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC---EEEEeccccccHHHH---HHHHHHHHHc
Confidence 47899999888865 467888875 88888888888777665 6666655 5555444 4444444444
Q ss_pred cCCcccCCeEEEEeCC-----hhHHHHcCCC
Q 013562 108 LGPSAVAKHMVAVSTN-----LTLVEKFGID 133 (441)
Q Consensus 108 ~g~~~~~~~~vavT~~-----~~~A~~~gi~ 133 (441)
+. .+-.|.+... .+.+++.|++
T Consensus 78 -~~---~~~~i~vGG~~~~~~~~~~~~~G~D 104 (119)
T cd02067 78 -GL---DDIPVLVGGAIVTRDFKFLKEIGVD 104 (119)
T ss_pred -CC---CCCeEEEECCCCChhHHHHHHcCCe
Confidence 22 1222444432 3577888876
No 85
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=53.73 E-value=49 Score=28.65 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=47.9
Q ss_pred CCceEEEecCCChHHHHHHhccCCCCc-EEEEEECC-CCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh---hH
Q 013562 52 RGRQLRFLANVDPIDVAKSITGLNPET-TLVVVVSK-TFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL---TL 126 (441)
Q Consensus 52 ~~~~i~fv~n~Dp~~~~~~l~~l~~~~-TlviviSK-SG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~---~~ 126 (441)
.+.++.+++|.++..+...++.+.... .=.+++|. .|..-.--..|+.+.+ ++|-. .++++.|.+.. +.
T Consensus 92 ~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~----~~~~~--p~~~~~vgD~~~d~~~ 165 (176)
T PF13419_consen 92 KGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALE----KLGIP--PEEILFVGDSPSDVEA 165 (176)
T ss_dssp TTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHH----HHTSS--GGGEEEEESSHHHHHH
T ss_pred ccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHH----HcCCC--cceEEEEeCCHHHHHH
Confidence 468999999999999988888776441 11333443 3322222333444444 33432 46789998864 68
Q ss_pred HHHcCCC
Q 013562 127 VEKFGID 133 (441)
Q Consensus 127 A~~~gi~ 133 (441)
|++.|+.
T Consensus 166 A~~~G~~ 172 (176)
T PF13419_consen 166 AKEAGIK 172 (176)
T ss_dssp HHHTTSE
T ss_pred HHHcCCe
Confidence 8999987
No 86
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=51.84 E-value=96 Score=31.09 Aligned_cols=93 Identities=20% Similarity=0.157 Sum_probs=50.5
Q ss_pred cCeEEEEccCccchHHHHHHHHhhc-chhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHH
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQT-DLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 97 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~-~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~ 97 (441)
|.-++.+-+-++.+.-..+.++|.. ... .-+..+.+-+. | ...-+.|.+|++|+..+.+..+
T Consensus 42 F~mr~~v~~~~~~~~~~~l~~~l~~~~~~----~~~l~i~l~~~-~------------~~~ki~vl~Sg~g~nl~~l~~~ 104 (280)
T TIGR00655 42 FFMRVEFQLEGFRLEESSLLAAFKSALAE----KFEMTWELILA-D------------KLKRVAILVSKEDHCLGDLLWR 104 (280)
T ss_pred EEEEEEEEeCCCCCCHHHHHHHHHHHHHH----HhCCEEEEecC-C------------CCcEEEEEEcCCChhHHHHHHH
Confidence 3334444443333445566666655 331 12445544432 2 2235788999999988887432
Q ss_pred HHHHHHHHHhcCCcccCCeEEEE-eCCh---hHHHHcCCCCCCeeeec
Q 013562 98 RTLREWISTALGPSAVAKHMVAV-STNL---TLVEKFGIDPNNAFAFW 141 (441)
Q Consensus 98 ~~~~~~l~~~~g~~~~~~~~vav-T~~~---~~A~~~gi~~~~~f~ip 141 (441)
. + .|. ....+++| |++. .+|+++||| ++.++
T Consensus 105 ~------~--~g~--l~~~i~~visn~~~~~~~A~~~gIp---~~~~~ 139 (280)
T TIGR00655 105 W------Y--SGE--LDAEIALVISNHEDLRSLVERFGIP---FHYIP 139 (280)
T ss_pred H------H--cCC--CCcEEEEEEEcChhHHHHHHHhCCC---EEEcC
Confidence 2 1 122 12345554 5443 479999999 66554
No 87
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=51.42 E-value=1.2e+02 Score=28.65 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=12.2
Q ss_pred cCeEEEEccCccchHH
Q 013562 19 LKDVVAVGIGGSFLGP 34 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~ 34 (441)
.+++|.|| ||+.++|
T Consensus 102 ~~~~llia-gG~Gitp 116 (231)
T cd06191 102 PGRYLLVA-AGSGITP 116 (231)
T ss_pred CCcEEEEe-cCccHhH
Confidence 46889988 8888887
No 88
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=50.74 E-value=1.7e+02 Score=25.92 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=53.3
Q ss_pred EEEEccCccchHHHHHHHHhhcchh--------H-HhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHH
Q 013562 22 VVAVGIGGSFLGPLFVHTALQTDLE--------A-IECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAE 92 (441)
Q Consensus 22 vV~iGiGGS~LG~~~l~~al~~~~~--------~-~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~E 92 (441)
|+|+|--|- +|-.++.+.+....+ . ..+..+.++...|-.|++.+.+.+.. -+.+|.+++-+.. +
T Consensus 1 I~V~GatG~-vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~---~d~vi~~~~~~~~--~ 74 (183)
T PF13460_consen 1 ILVFGATGF-VGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKG---ADAVIHAAGPPPK--D 74 (183)
T ss_dssp EEEETTTSH-HHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTT---SSEEEECCHSTTT--H
T ss_pred eEEECCCCh-HHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhh---cchhhhhhhhhcc--c
Confidence 456665443 466666555543210 0 01123456666678899888888875 5677887765544 2
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh
Q 013562 93 TMLNARTLREWISTALGPSAVAKHMVAVSTNL 124 (441)
Q Consensus 93 Tl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~ 124 (441)
....+.+.+.+++. | .+|+|.+++..
T Consensus 75 -~~~~~~~~~a~~~~-~----~~~~v~~s~~~ 100 (183)
T PF13460_consen 75 -VDAAKNIIEAAKKA-G----VKRVVYLSSAG 100 (183)
T ss_dssp -HHHHHHHHHHHHHT-T----SSEEEEEEETT
T ss_pred -cccccccccccccc-c----cccceeeeccc
Confidence 55556666655554 2 46888888643
No 89
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=49.28 E-value=71 Score=30.05 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=15.4
Q ss_pred CeEEEEccCccchHHHHHHHHh
Q 013562 20 KDVVAVGIGGSFLGPLFVHTAL 41 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al 41 (441)
.+|+++|.|| +|.+++....
T Consensus 20 s~VlviG~gg--lGsevak~L~ 39 (198)
T cd01485 20 AKVLIIGAGA--LGAEIAKNLV 39 (198)
T ss_pred CcEEEECCCH--HHHHHHHHHH
Confidence 5799999998 7887775543
No 90
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=49.04 E-value=18 Score=34.03 Aligned_cols=31 Identities=16% Similarity=-0.015 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCC--CCCHHHHHHH
Q 013562 167 VVEKFLKGAWSIDQHFISAPY--EKNIPVLLGL 197 (441)
Q Consensus 167 ~~~~lL~GA~~m~~~~~~~~~--~~N~a~~lA~ 197 (441)
.+--+++=|++|.+.+-++=+ -.||......
T Consensus 120 tipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 120 TIPVMLDIARDIEELCPDAWLINYTNPMGIVTE 152 (183)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcEEEeccChHHHHHH
Confidence 477888999999998754322 3688776554
No 91
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=48.62 E-value=28 Score=33.35 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=31.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeE-EEEeCCh-----hHHHHcCCCCCCeeeecc
Q 013562 80 LVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHM-VAVSTNL-----TLVEKFGIDPNNAFAFWD 142 (441)
Q Consensus 80 lviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~-vavT~~~-----~~A~~~gi~~~~~f~ip~ 142 (441)
+.|.+|.+|+..|.+..+ +++. . ...++ ++||++. +.|+++||| ++.++.
T Consensus 2 i~vl~Sg~Gsn~~al~~~------~~~~--~--l~~~i~~visn~~~~~~~~~A~~~gIp---~~~~~~ 57 (207)
T PLN02331 2 LAVFVSGGGSNFRAIHDA------CLDG--R--VNGDVVVVVTNKPGCGGAEYARENGIP---VLVYPK 57 (207)
T ss_pred EEEEEeCCChhHHHHHHH------HHcC--C--CCeEEEEEEEeCCCChHHHHHHHhCCC---EEEecc
Confidence 578899999988886432 2222 1 12344 4456542 679999999 766544
No 92
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=48.32 E-value=1.6e+02 Score=29.20 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=74.7
Q ss_pred HHHHHHHHhhcchhHHhhhCCceEEEec---CCChHHHHHHhccC--CCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHh
Q 013562 33 GPLFVHTALQTDLEAIECARGRQLRFLA---NVDPIDVAKSITGL--NPETTLVVVVSKTFTTAETMLNARTLREWISTA 107 (441)
Q Consensus 33 G~~~l~~al~~~~~~~~~~~~~~i~fv~---n~Dp~~~~~~l~~l--~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~ 107 (441)
|.-.+.+.+.+.. .++.++.++++. -.+|+.+.+....+ +.+--++|++|--+.+.-+- .+|+.|.+.
T Consensus 14 g~s~~idl~lDEr---AdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~----~ARE~l~~~ 86 (277)
T PRK00994 14 GMSPVIDLLLDER---ADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPK----KAREILKAA 86 (277)
T ss_pred chHHHHHHHHHhh---hcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCch----HHHHHHHhc
Confidence 4444555554432 123467888885 48899888665544 33445788888887777664 366666554
Q ss_pred cCCcccCCeEEEEeCCh-----hH--HHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHHHHHHH
Q 013562 108 LGPSAVAKHMVAVSTNL-----TL--VEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKG 174 (441)
Q Consensus 108 ~g~~~~~~~~vavT~~~-----~~--A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~~lL~G 174 (441)
+.-.|+||+.. +. .+-+|+- +.+..+-||-|--+|-++=| ++ +..| +-+.|+.
T Consensus 87 ------~iP~IvI~D~p~~K~~d~l~~~g~GYI---ivk~DpMIGArREFLDP~EM---a~-fNaD-~~kVLa~ 146 (277)
T PRK00994 87 ------GIPCIVIGDAPGKKVKDAMEEQGLGYI---IVKADPMIGARREFLDPVEM---AL-FNAD-VLKVLAG 146 (277)
T ss_pred ------CCCEEEEcCCCccchHHHHHhcCCcEE---EEecCccccchhhccCHHHH---HH-hhhh-HHHHHHh
Confidence 34678899753 22 2345554 56666779999888777763 33 2555 4555553
No 93
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=47.61 E-value=36 Score=34.34 Aligned_cols=39 Identities=28% Similarity=0.525 Sum_probs=24.5
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHH
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAK 69 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~ 69 (441)
.|.+||+||. |..++-...... ...+.|+. |+|...+..
T Consensus 2 ~i~viGvGg~--G~n~v~~l~~~~--------~~~~~~~a~ntD~~~L~~ 41 (304)
T cd02201 2 KIKVIGVGGG--GGNAVNRMIESG--------LEGVEFIAANTDAQALAK 41 (304)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcC--------CCCceEEEEECCHHHHhc
Confidence 4889999998 777776554431 12344433 679766544
No 94
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.55 E-value=2.1e+02 Score=25.56 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=45.9
Q ss_pred chHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHh
Q 013562 31 FLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTA 107 (441)
Q Consensus 31 ~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~ 107 (441)
++|...+...|+. .+.+++.+. .+.|+.+.+...+-++. ++-++|..|+|.|-+ +.+.+.|+++
T Consensus 15 diGk~iv~~~l~~--------~GfeVi~LG~~v~~e~~v~aa~~~~ad--iVglS~l~~~~~~~~---~~~~~~l~~~ 79 (134)
T TIGR01501 15 AVGNKILDHAFTN--------AGFNVVNLGVLSPQEEFIKAAIETKAD--AILVSSLYGHGEIDC---KGLRQKCDEA 79 (134)
T ss_pred hHhHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEecccccCHHHH---HHHHHHHHHC
Confidence 6788888888865 467888886 78999887777664442 566677888877755 4556666554
No 95
>PRK05442 malate dehydrogenase; Provisional
Probab=47.54 E-value=1.7e+02 Score=29.91 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=17.3
Q ss_pred HHHHcCCCCCCee--eeccccCCc-chhhhcc
Q 013562 126 LVEKFGIDPNNAF--AFWDWVGGR-YSVCSAV 154 (441)
Q Consensus 126 ~A~~~gi~~~~~f--~ip~~VGGR-fSv~S~v 154 (441)
+|+++|+++.++- .++.+-|+. |-+||.+
T Consensus 167 la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~ 198 (326)
T PRK05442 167 LAAKAGVPVADIKKMTVWGNHSATQYPDFRHA 198 (326)
T ss_pred HHHHhCcChHHeEEeEEEECCcCceeeccccC
Confidence 5666677666553 346666655 4557765
No 96
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=46.88 E-value=3.2e+02 Score=27.54 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=80.8
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhc---cCC--CCcEEEEEECCCCCCHHHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT---GLN--PETTLVVVVSKTFTTAETM 94 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~---~l~--~~~TlviviSKSG~T~ETl 94 (441)
+=|||-|+-||. --++.+.|.+ .-.+.+||..|+-+-+.+. ..+ -.+..|++-=.|+ |-.
T Consensus 2 ~lvIVTGlSGAG--KsvAl~~lED----------lGyycvDNLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~---~~~ 66 (286)
T COG1660 2 RLVIVTGLSGAG--KSVALRVLED----------LGYYCVDNLPPQLLPKLADLMLTLESRITKVAVVIDVRSR---EFF 66 (286)
T ss_pred cEEEEecCCCCc--HHHHHHHHHh----------cCeeeecCCCHHHHHHHHHHHhhcccCCceEEEEEecccc---hhH
Confidence 458889999984 4445566654 2367789999997766666 222 3566777777776 555
Q ss_pred HHHHHHHHHHHHhcCCcccCCeEEEEeCCh-hHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHHHHHH
Q 013562 95 LNARTLREWISTALGPSAVAKHMVAVSTNL-TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLK 173 (441)
Q Consensus 95 ~~~~~~~~~l~~~~g~~~~~~~~vavT~~~-~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~~lL~ 173 (441)
..+..+.+.|.++. + ..-+++.+-... .+.+.+.-. . |---+|..|++.-++. .+ +++|+
T Consensus 67 ~~l~~~l~~l~~~~--~-~~~~iLFLeA~~~~Lv~RY~et---R---------R~HPL~~~~~l~~~I~--~E--RelL~ 127 (286)
T COG1660 67 GDLEEVLDELKDNG--D-IDPRVLFLEADDETLVRRYSET---R---------RSHPLSEDGLLLEAIA--KE--RELLA 127 (286)
T ss_pred HHHHHHHHHHHhcC--C-CCceEEEEECchhHHHHHHhhh---h---------hcCCCCccCcHHHHHH--HH--HHHHH
Confidence 55666666666542 1 345777777543 455444322 1 1112666776554442 33 79999
Q ss_pred HHHHHHHHhh
Q 013562 174 GAWSIDQHFI 183 (441)
Q Consensus 174 GA~~m~~~~~ 183 (441)
-.+++.+...
T Consensus 128 pLk~~A~~vI 137 (286)
T COG1660 128 PLREIADLVI 137 (286)
T ss_pred HHHHHhhhEe
Confidence 9888887765
No 97
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=45.61 E-value=1.1e+02 Score=23.34 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q 013562 32 LGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWIST 106 (441)
Q Consensus 32 LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~ 106 (441)
.|.+++++.|.. .+.++.-.... .+ .++. ...|++++.+..--+. -..++.+++|+++
T Consensus 5 ~G~~a~~~~L~~--------~g~~v~~~~~~-~~----~l~~--~~~tll~i~~~~~~~~--~~~~~~l~~~v~~ 62 (70)
T PF14258_consen 5 NGTYALYQLLEE--------QGVKVERWRKP-YE----ALEA--DDGTLLVIGPDLRLSE--PEEAEALLEWVEA 62 (70)
T ss_pred hHHHHHHHHHHH--------CCCeeEEeccc-HH----HhCC--CCCEEEEEeCCCCCCc--hHHHHHHHHHHHc
Confidence 477888888865 35666655542 11 2332 5667766666644432 2233567777764
No 98
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=44.78 E-value=2e+02 Score=26.91 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=35.1
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEec---CCChHHHHHHh-------ccCCCCcEEEEEE
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA---NVDPIDVAKSI-------TGLNPETTLVVVV 84 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~---n~Dp~~~~~~l-------~~l~~~~Tlvivi 84 (441)
++|++|.+|+...-..+.+.+... ...+.+++ |.+++.+.+-+ +.-.|++-+++|.
T Consensus 35 ~~iNLGfsG~~~le~~~a~~ia~~--------~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 35 DVINLGFSGNGKLEPEVADLIAEI--------DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp EEEEEE-TCCCS--HHHHHHHHHS----------SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred CeEeeeecCccccCHHHHHHHhcC--------CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 799999999999988888888763 23677775 88888665544 3334555555544
No 99
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=44.49 E-value=80 Score=30.00 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.9
Q ss_pred CeEEEEccCccchHH
Q 013562 20 KDVVAVGIGGSFLGP 34 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~ 34 (441)
+++|+|+ ||+.++|
T Consensus 110 ~~~v~ia-gG~GiaP 123 (238)
T cd06211 110 RPIIFIA-GGSGLSS 123 (238)
T ss_pred CCEEEEe-CCcCHHH
Confidence 6788888 8898888
No 100
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.27 E-value=49 Score=33.22 Aligned_cols=53 Identities=26% Similarity=0.294 Sum_probs=34.1
Q ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEE-EeCCh---hHHHHcCCCCCCeeeecc
Q 013562 77 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVA-VSTNL---TLVEKFGIDPNNAFAFWD 142 (441)
Q Consensus 77 ~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~va-vT~~~---~~A~~~gi~~~~~f~ip~ 142 (441)
..-++|.+|.+|++.|.+..+. + .|. ....+++ ||++. .+|+++||| ++.++.
T Consensus 89 ~~ri~vl~Sg~gsnl~al~~~~------~--~~~--~~~~i~~visn~~~~~~lA~~~gIp---~~~~~~ 145 (286)
T PRK06027 89 RKRVVILVSKEDHCLGDLLWRW------R--SGE--LPVEIAAVISNHDDLRSLVERFGIP---FHHVPV 145 (286)
T ss_pred CcEEEEEEcCCCCCHHHHHHHH------H--cCC--CCcEEEEEEEcChhHHHHHHHhCCC---EEEecc
Confidence 3457889999999998875432 1 121 1344555 45442 589999999 776654
No 101
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=43.84 E-value=2e+02 Score=25.41 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=25.6
Q ss_pred CCCCCHHH--HHHHHHHHHHHHHhcCCcccCCeEEEEeCChh-----HHHHcCCCCCCee
Q 013562 86 KTFTTAET--MLNARTLREWISTALGPSAVAKHMVAVSTNLT-----LVEKFGIDPNNAF 138 (441)
Q Consensus 86 KSG~T~ET--l~~~~~~~~~l~~~~g~~~~~~~~vavT~~~~-----~A~~~gi~~~~~f 138 (441)
|.|.|..- -.|.+.++++..+- .+......++.||.+.+ +.+..|++++++|
T Consensus 82 ~~g~sR~~ll~~N~~i~~~~~~~i-~~~~p~~~vivvtNPvd~~t~~~~~~s~~~~~kvi 140 (141)
T PF00056_consen 82 KPGMSRLDLLEANAKIVKEIAKKI-AKYAPDAIVIVVTNPVDVMTYVAQKYSGFPPNKVI 140 (141)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHH-HHHSTTSEEEE-SSSHHHHHHHHHHHHTSSGGGEE
T ss_pred cccccHHHHHHHhHhHHHHHHHHH-HHhCCccEEEEeCCcHHHHHHHHHHhhCcCcccCc
Confidence 44555433 24555555554331 11112345666776643 3456677766654
No 102
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=42.56 E-value=2.1e+02 Score=26.28 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=46.9
Q ss_pred CeEEEEccCccchHHH-HHHHHhhcchhHHhhhCCceEEEe-c--CCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHH
Q 013562 20 KDVVAVGIGGSFLGPL-FVHTALQTDLEAIECARGRQLRFL-A--NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETML 95 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~-~l~~al~~~~~~~~~~~~~~i~fv-~--n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~ 95 (441)
+.+|+|| ||+.++|- .+.+.+.. ...+++++ . +.+.....+-|+.+.. ..+.+..+.+... ..
T Consensus 99 ~~~v~ia-~GtGiap~~~il~~~~~--------~~~~v~l~~~~r~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~-~~-- 165 (211)
T cd06185 99 RRHLLIA-GGIGITPILSMARALAA--------RGADFELHYAGRSREDAAFLDELAALPG-DRVHLHFDDEGGR-LD-- 165 (211)
T ss_pred CcEEEEe-ccchHhHHHHHHHHHHh--------CCCCEEEEEEeCCCcchhHHHHHhhhcC-CcEEEEECCCCCc-cC--
Confidence 5788888 88888873 23333321 11233333 3 3333334555666642 3344444443211 11
Q ss_pred HHHHHHHHHHHhcCCcccCCeEEEEeCCh-------hHHHHcCCCCCCee
Q 013562 96 NARTLREWISTALGPSAVAKHMVAVSTNL-------TLVEKFGIDPNNAF 138 (441)
Q Consensus 96 ~~~~~~~~l~~~~g~~~~~~~~vavT~~~-------~~A~~~gi~~~~~f 138 (441)
+.+.+.+ .. ....|.++.+. +.+++.|++.+++.
T Consensus 166 ----~~~~~~~-~~----~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~ 206 (211)
T cd06185 166 ----LAALLAA-PP----AGTHVYVCGPEGMMDAVRAAAAALGWPEARLH 206 (211)
T ss_pred ----HHHHhcc-CC----CCCEEEEECCHHHHHHHHHHHHHcCCChhheE
Confidence 2222222 11 12356667653 46788999876653
No 103
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=42.32 E-value=62 Score=34.24 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=22.1
Q ss_pred CcEEEeeChhhhhhHHHHHhHhhhhhCCC
Q 013562 209 PARAILPYSQALEKFAPHIQQVSMESNGK 237 (441)
Q Consensus 209 ~~~~l~~Y~~~L~~~~~w~qQL~aESlGK 237 (441)
....+=...+..+.+++|+.+-...+.|+
T Consensus 306 ~vTlmRtt~eE~~~~g~~ia~kLn~~~gp 334 (403)
T PF06792_consen 306 QVTLMRTTPEENRQLGEFIAEKLNRAKGP 334 (403)
T ss_pred ceeEeeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 33445566788999999998888887776
No 104
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=42.13 E-value=56 Score=37.58 Aligned_cols=121 Identities=20% Similarity=0.282 Sum_probs=76.9
Q ss_pred HhccCCCCcEEEE-EECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh----h---HHHHcCCCCCCeeeec
Q 013562 70 SITGLNPETTLVV-VVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL----T---LVEKFGIDPNNAFAFW 141 (441)
Q Consensus 70 ~l~~l~~~~Tlvi-viSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~----~---~A~~~gi~~~~~f~ip 141 (441)
++..|...+.|+= -..+|-.|.|.+.-|+.+++. .+++|.+..+.++|..|... + +++|.|+..
T Consensus 443 L~~EL~s~RPL~p~~~~~Se~t~~~L~t~r~a~~~-~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~------- 514 (910)
T COG2352 443 LLRELSSRRPLLPPFWQPSEETREELATFRVAAEA-KDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVD------- 514 (910)
T ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCC-------
Confidence 3344444444431 256899999999999999884 44577777778888776432 2 688988762
Q ss_pred cccCCcchhhhcchhhhhhhccCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhh
Q 013562 142 DWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALE 221 (441)
Q Consensus 142 ~~VGGRfSv~S~vGLlp~al~~G~d~~~~lL~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~ 221 (441)
. +|++ |..+|+- +.++.|=.+..-|.+-|. +|.-=+.+ ...|-..++|+.||+.-+
T Consensus 515 ~---~~~~----v~VvPLF-----ETieDL~na~~vm~~ll~-------l~~yR~~l-----~~~~n~QEVMlGYSDSnK 570 (910)
T COG2352 515 P---ERAR----VPVVPLF-----ETIEDLDNAPDVMTQLLN-------LPLYRALL-----AGRGNVQEVMLGYSDSNK 570 (910)
T ss_pred c---cCCc----ccccccc-----ccHHHHhccHHHHHHHHc-------ChHHHHHH-----cCCCCceEEEeccccccc
Confidence 1 5654 4556652 356777777777777663 22222222 123447899999999865
Q ss_pred h
Q 013562 222 K 222 (441)
Q Consensus 222 ~ 222 (441)
.
T Consensus 571 D 571 (910)
T COG2352 571 D 571 (910)
T ss_pred c
Confidence 3
No 105
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=41.80 E-value=82 Score=29.33 Aligned_cols=118 Identities=12% Similarity=0.168 Sum_probs=56.6
Q ss_pred cceeeeeeccCCCCc--CeEEEEccCccchHH-HHHHHHhhcchhHHhhhCCceEEEe-cCCChHH--HHHHhccCCCCc
Q 013562 5 VGKCFWQVGATGKVL--KDVVAVGIGGSFLGP-LFVHTALQTDLEAIECARGRQLRFL-ANVDPID--VAKSITGLNPET 78 (441)
Q Consensus 5 ~~~~~~~~g~~g~~~--~~vV~iGiGGS~LG~-~~l~~al~~~~~~~~~~~~~~i~fv-~n~Dp~~--~~~~l~~l~~~~ 78 (441)
+|.-.+.+|..|+-. +.+|+|+ ||+.++| ..+.+.+.... ...+++++ .+-++++ +.+-+..+. ..
T Consensus 83 ~G~~v~i~gP~G~~~~~~~~vlia-~GtGiaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~el~~l~-~~ 154 (218)
T cd06196 83 PGDTLLIEDPWGAIEYKGPGVFIA-GGAGITPFIAILRDLAAKG------KLEGNTLIFANKTEKDIILKDELEKML-GL 154 (218)
T ss_pred CCCEEEEECCccceEecCceEEEe-cCCCcChHHHHHHHHHhCC------CCceEEEEEecCCHHHHhhHHHHHHhh-cc
Confidence 344555667666532 3678887 8888887 33333332211 11233333 4444443 345555553 33
Q ss_pred EEEEEECCCCCCH-HHHHHHHHH-HHHHHHhcCCcccCCeEEEEeCCh-------hHHHHcCCCCCCe
Q 013562 79 TLVVVVSKTFTTA-ETMLNARTL-REWISTALGPSAVAKHMVAVSTNL-------TLVEKFGIDPNNA 137 (441)
Q Consensus 79 TlviviSKSG~T~-ETl~~~~~~-~~~l~~~~g~~~~~~~~vavT~~~-------~~A~~~gi~~~~~ 137 (441)
.++.+.|..+.+- .+ ..+ .+.+.+. ... ....|.|+.+. +.+++.|++++++
T Consensus 155 ~~~~~~s~~~~~~~~~----g~~~~~~l~~~-~~~--~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~i 215 (218)
T cd06196 155 KFINVVTDEKDPGYAH----GRIDKAFLKQH-VTD--FNQHFYVCGPPPMEEAINGALKELGVPEDSI 215 (218)
T ss_pred eEEEEEcCCCCCCeee----eEECHHHHHHh-cCC--CCCEEEEECCHHHHHHHHHHHHHcCCCHHHE
Confidence 4556677654321 00 000 1112222 111 12346677653 4567888887655
No 106
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=41.28 E-value=77 Score=34.61 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=8.3
Q ss_pred CeEEEEccCc
Q 013562 20 KDVVAVGIGG 29 (441)
Q Consensus 20 ~~vV~iGiGG 29 (441)
+|+|++|.|-
T Consensus 418 ~hiiI~G~G~ 427 (558)
T PRK10669 418 NHALLVGYGR 427 (558)
T ss_pred CCEEEECCCh
Confidence 6899999883
No 107
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=41.26 E-value=1.7e+02 Score=29.48 Aligned_cols=95 Identities=16% Similarity=0.210 Sum_probs=63.7
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCC-----CCcEEEEEECCCCCCHHHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN-----PETTLVVVVSKTFTTAETM 94 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~-----~~~TlviviSKSG~T~ETl 94 (441)
+-|||.|+-|| |--.+..+|.+. -.+-+||+.|.-+.++++.+. -++.++.+-..|+.-.+.+
T Consensus 2 ~~vIiTGlSGa--GKs~Al~~lED~----------Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~ 69 (284)
T PF03668_consen 2 ELVIITGLSGA--GKSTALRALEDL----------GYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDL 69 (284)
T ss_pred eEEEEeCCCcC--CHHHHHHHHHhc----------CeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHH
Confidence 45889999999 444455677653 467789999998877765443 4788899999998755443
Q ss_pred HHHHHHHHHHHHhcCCcccCCeEEEEeCC-hhHHHHcCCC
Q 013562 95 LNARTLREWISTALGPSAVAKHMVAVSTN-LTLVEKFGID 133 (441)
Q Consensus 95 ~~~~~~~~~l~~~~g~~~~~~~~vavT~~-~~~A~~~gi~ 133 (441)
..+.+.+.+. + ..-+++..... ..+.+.+.-.
T Consensus 70 ---~~~~~~l~~~-~---~~~~ilFLdA~d~~LirRy~eT 102 (284)
T PF03668_consen 70 ---FEALDELRKK-G---IDVRILFLDASDEVLIRRYSET 102 (284)
T ss_pred ---HHHHHHHHhc-C---CceEEEEEECChHHHHHHHHhc
Confidence 3444445444 2 24577887765 4566766554
No 108
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=41.15 E-value=33 Score=33.01 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=30.0
Q ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCC
Q 013562 77 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN 123 (441)
Q Consensus 77 ~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~ 123 (441)
.+-.++|+|-||...=++..++++|+ + +..+|++|+-
T Consensus 104 ~~DVliviSnSGrNpvpie~A~~~re----k------Ga~vI~vTSl 140 (243)
T COG4821 104 PNDVLIVISNSGRNPVPIEVAEYARE----K------GAKVIAVTSL 140 (243)
T ss_pred CCCEEEEEeCCCCCCcchHHHHHHHh----c------CCeEEEEehh
Confidence 45567889999999989988888876 4 6789999963
No 109
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=39.71 E-value=2e+02 Score=26.93 Aligned_cols=96 Identities=25% Similarity=0.331 Sum_probs=60.6
Q ss_pred eEEEEccCc--cchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEECC-CCCCHHHHHH
Q 013562 21 DVVAVGIGG--SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSK-TFTTAETMLN 96 (441)
Q Consensus 21 ~vV~iGiGG--S~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviSK-SG~T~ETl~~ 96 (441)
.||+.-++| -.+|.+++...|+. .+.++.++. ++.++.+.+.....++. +|.+|- ++++ +..
T Consensus 84 ~vl~~~~~gd~H~lG~~~v~~~l~~--------~G~~vi~lG~~~p~~~l~~~~~~~~~d---~v~lS~~~~~~---~~~ 149 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEA--------NGFEVIDLGRDVPPEEFVEAVKEHKPD---ILGLSALMTTT---MGG 149 (201)
T ss_pred eEEEEecCCccchHHHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC---EEEEecccccc---HHH
Confidence 455555554 47899999888865 467888885 89999998888877665 666665 4444 444
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEeCC---hhHHHHcCCC
Q 013562 97 ARTLREWISTALGPSAVAKHMVAVSTN---LTLVEKFGID 133 (441)
Q Consensus 97 ~~~~~~~l~~~~g~~~~~~~~vavT~~---~~~A~~~gi~ 133 (441)
++.+.+.+++. +.. .+--|.|-.. .+.+++.|.+
T Consensus 150 ~~~~i~~lr~~-~~~--~~~~i~vGG~~~~~~~~~~~GaD 186 (201)
T cd02070 150 MKEVIEALKEA-GLR--DKVKVMVGGAPVNQEFADEIGAD 186 (201)
T ss_pred HHHHHHHHHHC-CCC--cCCeEEEECCcCCHHHHHHcCCc
Confidence 56666666665 221 0112333332 3677777765
No 110
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=39.24 E-value=1.6e+02 Score=27.57 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=11.8
Q ss_pred CeEEEEccCccchHH
Q 013562 20 KDVVAVGIGGSFLGP 34 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~ 34 (441)
+++|+|+ ||+.++|
T Consensus 101 ~~~llia-gG~GiaP 114 (227)
T cd06213 101 APILCIA-GGSGLAP 114 (227)
T ss_pred CcEEEEe-cccchhH
Confidence 5788888 8898888
No 111
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=39.18 E-value=1.8e+02 Score=27.37 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=15.2
Q ss_pred cCeEEEEccCccchHH-HHHHHHh
Q 013562 19 LKDVVAVGIGGSFLGP-LFVHTAL 41 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~-~~l~~al 41 (441)
.+++|+|+ ||+.++| ..+.+.+
T Consensus 103 ~~~~l~ia-gG~Giap~~~~l~~~ 125 (232)
T cd06212 103 DRPIVLIG-GGSGMAPLLSLLRDM 125 (232)
T ss_pred CCcEEEEe-cCcchhHHHHHHHHH
Confidence 46889998 8888888 3444444
No 112
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=39.10 E-value=74 Score=32.19 Aligned_cols=72 Identities=26% Similarity=0.316 Sum_probs=38.5
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEEC---C---CCCCHHH
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVS---K---TFTTAET 93 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviS---K---SG~T~ET 93 (441)
.|.+||+||- |.+++-....... . .+.|+. |+|...+.. ++.+ .-+.+-. | +|+..|.
T Consensus 2 ~i~viGvGg~--G~n~v~~~~~~~~------~--~~~~iainTd~~~L~~----~~a~-~ki~iG~~~t~g~GaG~~~~~ 66 (303)
T cd02191 2 KIAVIGFGGA--GGNIVDKFLEYDK------E--GRSAVAVNTDAQDLLG----LEAE-NRVLIGQARTKGLGAGANPEL 66 (303)
T ss_pred EEEEEEECch--HHHHHHHHHHcCC------C--CccEEEEECcHHHHhc----CCCC-cEEecCCccccCCCCCCCHHH
Confidence 4889999997 7788766654311 2 234443 688766544 4333 3333332 1 4666664
Q ss_pred H-HHHHHHHHHHHHh
Q 013562 94 M-LNARTLREWISTA 107 (441)
Q Consensus 94 l-~~~~~~~~~l~~~ 107 (441)
- ..++..++.+++.
T Consensus 67 G~~~a~e~~~~I~~~ 81 (303)
T cd02191 67 GAEAAEEVQEAIDNI 81 (303)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3 2233344445444
No 113
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=37.64 E-value=83 Score=28.56 Aligned_cols=52 Identities=6% Similarity=-0.001 Sum_probs=38.8
Q ss_pred CCcceeEEEecCCCc-ccHHHHHHHHHHHHHHHHHHhccCCCCCcchHHhHHH
Q 013562 340 GNRPSLSLLLPSLNA-YNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSL 391 (441)
Q Consensus 340 g~rPs~~I~l~~l~~-~~lG~Li~~~e~~t~v~g~L~gINPFDQpGVE~gK~~ 391 (441)
.+.+++.|..+.-++ ..+-+|+++-.+..++.+.+.|+||..-|-+...|+.
T Consensus 101 ~~~~v~~v~~~g~s~l~rl~~li~l~d~aS~YLA~~~GvDP~~v~~I~~lK~~ 153 (155)
T PF10432_consen 101 RGVRVIEVEAEGGSPLERLASLIYLGDYASVYLALLYGVDPTPVPIIDELKER 153 (155)
T ss_dssp CSSEEEEE--SCCCHHHHHHHHHHHHHHHHHHHHHHCT--SS-TCCCHHHHHH
T ss_pred cCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhCcCCCcchHHHHHHhc
Confidence 456777777765552 3488999999999999999999999999999998864
No 114
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.48 E-value=27 Score=26.48 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHhccCCC
Q 013562 355 YNIGQLLAIYEHRIAVEGFIWGINSF 380 (441)
Q Consensus 355 ~~lG~Li~~~e~~t~v~g~L~gINPF 380 (441)
.++=.++.+||..+ -+||||
T Consensus 35 envk~ll~lYE~Vs------~~iNPF 54 (55)
T PF05377_consen 35 ENVKDLLSLYEVVS------NQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHH------ccCCCC
Confidence 56678999999877 599999
No 115
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=36.71 E-value=1.1e+02 Score=30.89 Aligned_cols=9 Identities=44% Similarity=0.512 Sum_probs=6.8
Q ss_pred eEEEEccCc
Q 013562 21 DVVAVGIGG 29 (441)
Q Consensus 21 ~vV~iGiGG 29 (441)
.|.+||.|.
T Consensus 2 kI~IIGaG~ 10 (308)
T cd05292 2 KVAIVGAGF 10 (308)
T ss_pred EEEEECCCH
Confidence 488999873
No 116
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=36.48 E-value=1.5e+02 Score=29.61 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=18.1
Q ss_pred hHHHHcCCCCCCeeeeccccCCcchhhhcch
Q 013562 125 TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVG 155 (441)
Q Consensus 125 ~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vG 155 (441)
+.|++.|+. .. .-++++|+++--|+--
T Consensus 249 ~~Ak~~G~~---a~-~~~glPg~~ap~ta~~ 275 (287)
T TIGR02853 249 EYAKKRGIK---AL-LAPGLPGIVAPKTAGK 275 (287)
T ss_pred HHHHHCCCE---EE-EeCCCCcccCchhHHH
Confidence 689999987 33 2355677776665554
No 117
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=35.60 E-value=32 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=19.2
Q ss_pred EEEEeCCh--hHHHHcCCCCCCeeeeccccCCcchh
Q 013562 117 MVAVSTNL--TLVEKFGIDPNNAFAFWDWVGGRYSV 150 (441)
Q Consensus 117 ~vavT~~~--~~A~~~gi~~~~~f~ip~~VGGRfSv 150 (441)
+|+|+++. +.|++.|+. +.|||++
T Consensus 33 ~viI~dPe~S~IAk~l~i~----------~pG~YAl 58 (61)
T PRK08351 33 LVIIIDVENSRIAKKLGAK----------VPGKYAI 58 (61)
T ss_pred EEEEeCCcHhHHHHHhCCC----------CCCeEEE
Confidence 67788764 799999998 7888864
No 118
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=34.95 E-value=83 Score=31.61 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=34.3
Q ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEE-eCC---hhHHHHcCCCCCCeeeec
Q 013562 76 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAV-STN---LTLVEKFGIDPNNAFAFW 141 (441)
Q Consensus 76 ~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vav-T~~---~~~A~~~gi~~~~~f~ip 141 (441)
+..-++|.+|++|++.+-+..+. + .|. ....+++| |+. ..+|+++||| ++.++
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~------~--~~~--~~~~i~~visn~~~~~~lA~~~gIp---~~~~~ 144 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRW------R--IGE--LPMDIVGVVSNHPDLEPLAAWHGIP---FHHFP 144 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHH------H--cCC--CCcEEEEEEECCccHHHHHHHhCCC---EEEeC
Confidence 34467899999999888764332 1 122 23456665 544 2579999999 77665
No 119
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=34.55 E-value=3.2e+02 Score=26.94 Aligned_cols=55 Identities=25% Similarity=0.396 Sum_probs=30.9
Q ss_pred eeccCCCC-----cCeEEEEccCccchHH-HHHHHHhhcchhHHhhhCCceEEEe-cCCChHHH--HHHhccC
Q 013562 11 QVGATGKV-----LKDVVAVGIGGSFLGP-LFVHTALQTDLEAIECARGRQLRFL-ANVDPIDV--AKSITGL 74 (441)
Q Consensus 11 ~~g~~g~~-----~~~vV~iGiGGS~LG~-~~l~~al~~~~~~~~~~~~~~i~fv-~n~Dp~~~--~~~l~~l 74 (441)
.+|..|+. .+++|+|| ||+.++| ..+.+.+.. .+.+++++ .+-+++++ .+-+..+
T Consensus 85 i~GP~G~~~~~~~~~~~llIa-GGiGiaPl~~l~~~l~~--------~~~~v~l~~g~r~~~d~~~~~el~~~ 148 (281)
T PRK06222 85 VVGPLGKPSEIEKFGTVVCVG-GGVGIAPVYPIAKALKE--------AGNKVITIIGARNKDLLILEDEMKAV 148 (281)
T ss_pred EEcCCCCCcccCCCCeEEEEe-CcCcHHHHHHHHHHHHH--------CCCeEEEEEecCCHHHhhcHHHHHhh
Confidence 55666643 25788888 9999998 344444432 12345544 45555543 3444444
No 120
>PRK10537 voltage-gated potassium channel; Provisional
Probab=34.43 E-value=91 Score=32.81 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh---hHHHHcCCCCCCeeeeccccCCcc
Q 013562 88 FTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRY 148 (441)
Q Consensus 88 G~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~---~~A~~~gi~~~~~f~ip~~VGGRf 148 (441)
.+..|++.....+++ .++ ..++|+.+.+. +..++.|.+ ....|..++|+.
T Consensus 311 ~dD~~Nl~ivL~ar~-----l~p---~~kIIa~v~~~~~~~~L~~~GaD---~VIsp~~l~g~~ 363 (393)
T PRK10537 311 DNDADNAFVVLAAKE-----MSS---DVKTVAAVNDSKNLEKIKRVHPD---MIFSPQLLGSEL 363 (393)
T ss_pred CChHHHHHHHHHHHH-----hCC---CCcEEEEECCHHHHHHHHhcCCC---EEECHHHHHHHH
Confidence 455666655555543 222 34667666543 455667776 555566655543
No 121
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=34.40 E-value=91 Score=29.62 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=38.5
Q ss_pred HHHHHHHhhcchhHHhhhCCceEEEe----cCCChHHHHHHhccCCCCcEEEEEECCCC
Q 013562 34 PLFVHTALQTDLEAIECARGRQLRFL----ANVDPIDVAKSITGLNPETTLVVVVSKTF 88 (441)
Q Consensus 34 ~~~l~~al~~~~~~~~~~~~~~i~fv----~n~Dp~~~~~~l~~l~~~~TlviviSKSG 88 (441)
-+++..+|+.... ...+++.++ .+.||..+.++++.+..++--+-|||-++
T Consensus 86 Le~A~~~L~~~p~----~~srEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI~laa 140 (193)
T PF04056_consen 86 LEMARSSLKHMPS----HGSREILVIFGSLTTCDPGDIHETIESLKKENIRVSVISLAA 140 (193)
T ss_pred HHHHHHHHhhCcc----ccceEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEEEEhH
Confidence 4666666664321 123577775 48999999999999999999999998875
No 122
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=32.29 E-value=1e+02 Score=31.81 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=28.0
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCC--ceEEEecCCChHHHHHHhc
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARG--RQLRFLANVDPIDVAKSIT 72 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~--~~i~fv~n~Dp~~~~~~l~ 72 (441)
.|.+||+||- |.+++-..+..... .... ++..++ |+|+..+..+..
T Consensus 2 ~i~viGvGg~--G~niv~~l~~~~~~---~~~~~~~~~iav-ntD~~~L~~l~~ 49 (349)
T cd02202 2 RVLIIGVGQA--GGRIVDALNRHDKR---SGFGYCVGALAI-NTAKNDLKGLKH 49 (349)
T ss_pred EEEEEEeCCc--HHHHHHHHHHhCCC---cCCccceeEEEE-ECCHHHHHhhhc
Confidence 4789999988 78887666553210 0001 344444 589988876643
No 123
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=31.76 E-value=2.1e+02 Score=28.80 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=12.6
Q ss_pred cCeEEEEccCccchHHH
Q 013562 19 LKDVVAVGIGGSFLGPL 35 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~ 35 (441)
-+++|+|+ ||+.++|-
T Consensus 204 ~~~ivlIa-gGtGiaP~ 219 (339)
T PRK07609 204 DKPIVLLA-SGTGFAPI 219 (339)
T ss_pred CCCEEEEe-cCcChhHH
Confidence 35788888 88988883
No 124
>PRK06179 short chain dehydrogenase; Provisional
Probab=31.70 E-value=4.4e+02 Score=24.98 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=35.8
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchh---------HHhhhCCceEEEecCCChHHHHHHhccC----CCCcEEEEEECC
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLE---------AIECARGRQLRFLANVDPIDVAKSITGL----NPETTLVVVVSK 86 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~---------~~~~~~~~~i~fv~n~Dp~~~~~~l~~l----~~~~TlviviSK 86 (441)
+.++|+| |.+.+|-.++.+....-.. ......+..++-.|-.|++.+.++++.+ ..-+.+|+.+.-
T Consensus 5 ~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 5 KVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAGV 83 (270)
T ss_pred CEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 3588888 5567888777665543110 0000112334445667888887777653 233566666543
No 125
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=30.73 E-value=3.3e+02 Score=22.97 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=43.8
Q ss_pred CCceEEEecCCC--------hHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhc-CCcccCCeEEEEeC
Q 013562 52 RGRQLRFLANVD--------PIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTAL-GPSAVAKHMVAVST 122 (441)
Q Consensus 52 ~~~~i~fv~n~D--------p~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~-g~~~~~~~~vavT~ 122 (441)
.+.++.+++|-. .+.+...++.+..... +++++- +.--.--..+..+ .++. +-+ .++++.|-+
T Consensus 40 ~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~-~~~KP~~~~~~~~----~~~~~~~~--~~~~v~IGD 111 (132)
T TIGR01662 40 AGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPID-VLYACP-HCRKPKPGMFLEA----LKRFNEID--PEESVYVGD 111 (132)
T ss_pred CCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEE-EEEECC-CCCCCChHHHHHH----HHHcCCCC--hhheEEEcC
Confidence 467899999877 6778888888876533 333332 1111111222333 3344 232 467888888
Q ss_pred C-h---hHHHHcCCC
Q 013562 123 N-L---TLVEKFGID 133 (441)
Q Consensus 123 ~-~---~~A~~~gi~ 133 (441)
+ . +.|++.|+.
T Consensus 112 ~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 112 QDLTDLQAAKRAGLA 126 (132)
T ss_pred CCcccHHHHHHCCCe
Confidence 3 2 678899987
No 126
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.93 E-value=74 Score=33.82 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=30.6
Q ss_pred cceeeeeeccCCCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCCh
Q 013562 5 VGKCFWQVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDP 64 (441)
Q Consensus 5 ~~~~~~~~g~~g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp 64 (441)
.|-|.|..-..+ ++|++||+|++.+. + .++|.. .+.++.+++.-|.
T Consensus 5 ~~~~~~~~~~~~---~~v~viG~G~~G~~--~-A~~L~~--------~G~~V~~~d~~~~ 50 (480)
T PRK01438 5 PGLTSWHSDWQG---LRVVVAGLGVSGFA--A-ADALLE--------LGARVTVVDDGDD 50 (480)
T ss_pred cchhhcccCcCC---CEEEEECCCHHHHH--H-HHHHHH--------CCCEEEEEeCCch
Confidence 456777776555 47999999998665 3 455543 3567888775443
No 127
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=29.90 E-value=86 Score=31.77 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=30.8
Q ss_pred EEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccC
Q 013562 22 VVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGL 74 (441)
Q Consensus 22 vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l 74 (441)
|+|.|-||| +|.+++.+.+... ..+++.+| .|...++++-..+
T Consensus 1 VLVTGa~GS-IGseL~rql~~~~--------p~~lil~d-~~E~~l~~l~~~l 43 (293)
T PF02719_consen 1 VLVTGAGGS-IGSELVRQLLRYG--------PKKLILFD-RDENKLYELEREL 43 (293)
T ss_dssp EEEETTTSH-HHHHHHHHHHCCB---------SEEEEEE-S-HHHHHHHHHHC
T ss_pred CEEEccccH-HHHHHHHHHHhcC--------CCeEEEeC-CChhHHHHHHHHH
Confidence 678999999 5999999888652 13577777 4666677766666
No 128
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=29.87 E-value=90 Score=27.27 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=28.9
Q ss_pred cCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCce-EEEecCCChHHHHHHhccC
Q 013562 19 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQ-LRFLANVDPIDVAKSITGL 74 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~-i~fv~n~Dp~~~~~~l~~l 74 (441)
=+++++||-||.+ +++..+|... +.+ ++++ |-+.+...++.+.+
T Consensus 12 ~~~vlviGaGg~a---r~v~~~L~~~--------g~~~i~i~-nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 12 GKRVLVIGAGGAA---RAVAAALAAL--------GAKEITIV-NRTPERAEALAEEF 56 (135)
T ss_dssp TSEEEEESSSHHH---HHHHHHHHHT--------TSSEEEEE-ESSHHHHHHHHHHH
T ss_pred CCEEEEECCHHHH---HHHHHHHHHc--------CCCEEEEE-ECCHHHHHHHHHHc
Confidence 3689999999974 5555566542 344 5544 46777777776666
No 129
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=29.72 E-value=2.7e+02 Score=25.65 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=14.9
Q ss_pred CceEEEecCCChHHHHHHhccCCCC
Q 013562 53 GRQLRFLANVDPIDVAKSITGLNPE 77 (441)
Q Consensus 53 ~~~i~fv~n~Dp~~~~~~l~~l~~~ 77 (441)
+.++.+++|.+...+...++.+...
T Consensus 110 g~~~~i~Tn~~~~~~~~~l~~~~l~ 134 (221)
T TIGR02253 110 GYRLGIITDGLPVKQWEKLERLGVR 134 (221)
T ss_pred CCEEEEEeCCchHHHHHHHHhCChH
Confidence 4566666666666666666655443
No 130
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=28.93 E-value=1.8e+02 Score=29.07 Aligned_cols=17 Identities=29% Similarity=0.049 Sum_probs=13.9
Q ss_pred EEEEEECCCCCCHHHHH
Q 013562 79 TLVVVVSKTFTTAETML 95 (441)
Q Consensus 79 TlviviSKSG~T~ETl~ 95 (441)
-++|++.||..|.+++.
T Consensus 74 D~vilavK~~~~~~~~~ 90 (313)
T PRK06249 74 DWVLVGLKTTANALLAP 90 (313)
T ss_pred CEEEEEecCCChHhHHH
Confidence 47889999999887765
No 131
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=28.70 E-value=1.2e+02 Score=29.01 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=29.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEe-CC-----hhHHHHcCCC
Q 013562 79 TLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVS-TN-----LTLVEKFGID 133 (441)
Q Consensus 79 TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT-~~-----~~~A~~~gi~ 133 (441)
.++|.+|=+|+..|.+..+ .+ .|. ...++.+|- ++ .+.|+++||+
T Consensus 2 ki~VlaSG~GSNlqaiida------~~--~~~--~~a~i~~Visd~~~A~~lerA~~~gIp 52 (200)
T COG0299 2 KIAVLASGNGSNLQAIIDA------IK--GGK--LDAEIVAVISDKADAYALERAAKAGIP 52 (200)
T ss_pred eEEEEEeCCcccHHHHHHH------Hh--cCC--CCcEEEEEEeCCCCCHHHHHHHHcCCC
Confidence 4689999999998887432 22 121 134566654 43 3789999999
No 132
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=28.51 E-value=3.7e+02 Score=25.10 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=11.9
Q ss_pred CeEEEEccCccchHH
Q 013562 20 KDVVAVGIGGSFLGP 34 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~ 34 (441)
+++|.|| ||+.++|
T Consensus 103 ~~~vlia-~GtGIaP 116 (228)
T cd06209 103 RPLLMLA-GGTGLAP 116 (228)
T ss_pred CeEEEEE-cccCHhH
Confidence 6789998 7888888
No 133
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=28.32 E-value=1.3e+02 Score=28.14 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=11.9
Q ss_pred cCeEEEEccCccchHH
Q 013562 19 LKDVVAVGIGGSFLGP 34 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~ 34 (441)
-+.+|+|| ||+.++|
T Consensus 103 ~~~~vlIa-gG~Giap 117 (231)
T cd06215 103 ADKLLLLS-AGSGITP 117 (231)
T ss_pred CCcEEEEe-cCcCcch
Confidence 46788888 8888887
No 134
>PRK09004 FMN-binding protein MioC; Provisional
Probab=28.12 E-value=2.3e+02 Score=25.18 Aligned_cols=67 Identities=21% Similarity=0.157 Sum_probs=36.0
Q ss_pred ccchH-HHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHh
Q 013562 29 GSFLG-PLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTA 107 (441)
Q Consensus 29 GS~LG-~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~ 107 (441)
||..| .+.+.+.+.... ...+.++.+++..+++ .+...+.+++++|=. +.-|.-.+++.+.+||++.
T Consensus 9 gS~tGnae~~A~~l~~~~----~~~g~~~~~~~~~~~~-------~l~~~~~li~~~sT~-G~Ge~p~~~~~f~~~L~~~ 76 (146)
T PRK09004 9 GSTLGGAEYVADHLAEKL----EEAGFSTETLHGPLLD-------DLSASGLWLIVTSTH-GAGDLPDNLQPFFEELQEQ 76 (146)
T ss_pred EcCchHHHHHHHHHHHHH----HHcCCceEEeccCCHH-------HhccCCeEEEEECCC-CCCCCChhHHHHHHHHHhc
Confidence 44444 355555554332 1234555555544432 234455555555544 3346666788899988764
No 135
>PRK06813 homoserine dehydrogenase; Validated
Probab=28.12 E-value=2.9e+02 Score=28.58 Aligned_cols=14 Identities=36% Similarity=0.273 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHHHH
Q 013562 164 GFSVVEKFLKGAWSI 178 (441)
Q Consensus 164 G~d~~~~lL~GA~~m 178 (441)
|.+ |++.|.-|+++
T Consensus 191 g~~-f~eal~~Aq~l 204 (346)
T PRK06813 191 DIT-FEEALKEAQSK 204 (346)
T ss_pred CCC-HHHHHHHHHHc
Confidence 777 88888877664
No 136
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=28.06 E-value=1.5e+02 Score=28.32 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=35.3
Q ss_pred CCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCC-----------CCc-EEEEE
Q 013562 16 GKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN-----------PET-TLVVV 83 (441)
Q Consensus 16 g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~-----------~~~-Tlviv 83 (441)
++.++.||+.||||-- +.+.|....+. -.+..++..-.+.+...+++.|.... ..+ --|++
T Consensus 64 ~e~~d~ivIAGMGG~l-----I~~ILe~~~~~--~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~ 136 (205)
T PF04816_consen 64 GEDVDTIVIAGMGGEL-----IIEILEAGPEK--LSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVEENGRFYEIIV 136 (205)
T ss_dssp GG---EEEEEEE-HHH-----HHHHHHHTGGG--GTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEecCCHHH-----HHHHHHhhHHH--hccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEE
Confidence 3447899999999874 44444322110 01123555556899999998887542 122 22667
Q ss_pred ECCCCCCHH
Q 013562 84 VSKTFTTAE 92 (441)
Q Consensus 84 iSKSG~T~E 92 (441)
+++++...+
T Consensus 137 ~~~~~~~~~ 145 (205)
T PF04816_consen 137 AERGEEKPE 145 (205)
T ss_dssp EEESSS---
T ss_pred EEeCCCCCC
Confidence 777777653
No 137
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=28.01 E-value=2e+02 Score=26.78 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=11.8
Q ss_pred CeEEEEccCccchHHH
Q 013562 20 KDVVAVGIGGSFLGPL 35 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~ 35 (441)
+++|+|+ ||+.++|-
T Consensus 98 ~~~v~ia-gG~Giap~ 112 (222)
T cd06194 98 GPLLLVG-AGTGLAPL 112 (222)
T ss_pred CCEEEEe-cCcchhhH
Confidence 5788888 88888873
No 138
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.95 E-value=4.1e+02 Score=23.49 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=45.1
Q ss_pred chHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHh
Q 013562 31 FLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTA 107 (441)
Q Consensus 31 ~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~ 107 (441)
++|.+++...|+. .+.+++.+. ++.|+.+.+...+-++. ++-++|-.++|.+-+ +.+.+.|+++
T Consensus 13 diGkniv~~~L~~--------~GfeVidLG~~v~~e~~v~aa~~~~ad--iVglS~L~t~~~~~~---~~~~~~l~~~ 77 (128)
T cd02072 13 AVGNKILDHAFTE--------AGFNVVNLGVLSPQEEFIDAAIETDAD--AILVSSLYGHGEIDC---KGLREKCDEA 77 (128)
T ss_pred HHHHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEeccccCCHHHH---HHHHHHHHHC
Confidence 6788998888875 467888875 78999887777654432 566677888877665 4555556554
No 139
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.78 E-value=3.2e+02 Score=22.61 Aligned_cols=41 Identities=24% Similarity=0.479 Sum_probs=31.2
Q ss_pred ccchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCC
Q 013562 29 GSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPE 77 (441)
Q Consensus 29 GS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~ 77 (441)
--.+|...+..+|+. .+.++.+++ +++++.+.+.+...++.
T Consensus 12 ~~~lGl~~la~~l~~--------~G~~v~~~d~~~~~~~l~~~~~~~~pd 53 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRK--------AGHEVDILDANVPPEELVEALRAERPD 53 (121)
T ss_dssp STSHHHHHHHHHHHH--------TTBEEEEEESSB-HHHHHHHHHHTTCS
T ss_pred chhHHHHHHHHHHHH--------CCCeEEEECCCCCHHHHHHHHhcCCCc
Confidence 446899999888875 367888887 78889998888777654
No 140
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=27.43 E-value=24 Score=40.53 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=57.4
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh-------hHHHHcCCCCCCeeeeccccCCcchhhhcchh
Q 013562 84 VSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL-------TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGV 156 (441)
Q Consensus 84 iSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~-------~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGL 156 (441)
.+.|-.|.|++..|+.+.++ .+.+|.+..++.+|.-|... -++++.|+.. +.. ++ ..+-.
T Consensus 336 ~~~~~~~~~~l~~f~~~~~~-~~~~g~~~~~~yIISmt~~~sdvL~v~~L~k~~gl~~------~~~-~~-----~~l~v 402 (794)
T PF00311_consen 336 APLSEETREVLDTFRVIAEI-QKRYGPDAIGRYIISMTESASDVLEVLLLAKEAGLAD------GGD-GG-----CRLDV 402 (794)
T ss_dssp ----HHHHHHHHHHHHHHHS------CCCEEEEEECT--SCHHHHHHHHHHHCTT---------SS---------S---E
T ss_pred CCCCHHHHHHHHHHHHHHHh-hhcchhhhHHHheeeCCCChHHHHHHHHHHHHhCCCc------ccc-cc-----cccCC
Confidence 35677788999999888764 44567776777777777542 2678877631 000 11 44555
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeeChhhhhh
Q 013562 157 LPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEK 222 (441)
Q Consensus 157 lp~al~~G~d~~~~lL~GA~~m~~~~~~~~~~~N~a~~lA~l~~~~~~~~g~~~~~l~~Y~~~L~~ 222 (441)
+|+- +.++.|-.+..-|++-|. ||.+. +. ....|...++|+.||+.-+.
T Consensus 403 vPLF-----ETi~DL~~a~~im~~ll~------~p~yr-~~-----l~~~~~~QeVMlGYSDS~KD 451 (794)
T PF00311_consen 403 VPLF-----ETIDDLENAPDIMEELLS------NPAYR-AH-----LKARGNRQEVMLGYSDSNKD 451 (794)
T ss_dssp EEEE------SHHHHHCHHHHHHHHCC------SHHHH-HH-----CTT---EEEEEEECCCHHHH
T ss_pred CCCC-----CCHHHHHhHHHHHHHHHc------CHHHH-HH-----HhcCcceEEEEecccccccc
Confidence 6652 346777777777887763 55332 11 12235578999999998664
No 141
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=27.40 E-value=17 Score=19.11 Aligned_cols=6 Identities=50% Similarity=1.985 Sum_probs=4.6
Q ss_pred ceeeee
Q 013562 6 GKCFWQ 11 (441)
Q Consensus 6 ~~~~~~ 11 (441)
..|||+
T Consensus 4 ~~CFWK 9 (12)
T PF02083_consen 4 SECFWK 9 (12)
T ss_pred cchhhh
Confidence 369997
No 142
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=27.08 E-value=4.2e+02 Score=31.31 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=24.4
Q ss_pred cceeee-eeccCCCCc--------CeEEEEccCccchHHH-HHHHHh
Q 013562 5 VGKCFW-QVGATGKVL--------KDVVAVGIGGSFLGPL-FVHTAL 41 (441)
Q Consensus 5 ~~~~~~-~~g~~g~~~--------~~vV~iGiGGS~LG~~-~l~~al 41 (441)
+|...+ .+|..|+.+ +++|+|| ||+.++|- .+.+.+
T Consensus 727 ~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIA-GGiGIAPl~sl~r~l 772 (944)
T PRK12779 727 IGDAFSGIAGPLGRASELHRYEGNQTVVFCA-GGVGLPPVYPIMRAH 772 (944)
T ss_pred CcCEEeeeecCCCCCcCCccccCCCcEEEEE-ccEeHHHHHHHHHHH
Confidence 455666 788887653 3788887 99999983 334433
No 143
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=26.99 E-value=2.5e+02 Score=25.81 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=11.9
Q ss_pred cCeEEEEccCccchHH
Q 013562 19 LKDVVAVGIGGSFLGP 34 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~ 34 (441)
-+++|+|+ ||+.++|
T Consensus 97 ~~~~v~ia-~G~Giap 111 (223)
T cd00322 97 SGPVVLIA-GGIGITP 111 (223)
T ss_pred CCcEEEEe-cCCchhH
Confidence 36788888 7888887
No 144
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=26.86 E-value=56 Score=25.49 Aligned_cols=24 Identities=17% Similarity=0.594 Sum_probs=18.9
Q ss_pred EEEEeCCh--hHHHHcCCCCCCeeeeccccCCcchh
Q 013562 117 MVAVSTNL--TLVEKFGIDPNNAFAFWDWVGGRYSV 150 (441)
Q Consensus 117 ~vavT~~~--~~A~~~gi~~~~~f~ip~~VGGRfSv 150 (441)
+++|++++ ++|++.|++ +.|+|.+
T Consensus 36 ~~iIidpe~SeIAkrlgi~----------~Pg~yAl 61 (64)
T COG2093 36 LLIIIDPEKSEIAKRLGIK----------IPGKYAL 61 (64)
T ss_pred EEEEEcCcHHHHHHHhCCC----------CCceEEE
Confidence 67777764 799999998 7788864
No 145
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=26.67 E-value=4.9e+02 Score=24.57 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=12.1
Q ss_pred cCeEEEEccCccchHH
Q 013562 19 LKDVVAVGIGGSFLGP 34 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~ 34 (441)
.+++|.|+ ||+.++|
T Consensus 122 ~~~~v~ia-gG~Giap 136 (243)
T cd06216 122 PPRLLLIA-AGSGITP 136 (243)
T ss_pred CCCEEEEe-cCccHhH
Confidence 46888888 8888887
No 146
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=26.42 E-value=1.5e+02 Score=29.71 Aligned_cols=17 Identities=6% Similarity=0.258 Sum_probs=13.9
Q ss_pred EEEEEECCCCCCHHHHH
Q 013562 79 TLVVVVSKTFTTAETML 95 (441)
Q Consensus 79 TlviviSKSG~T~ETl~ 95 (441)
-+|+|..||..|.|.+.
T Consensus 72 D~viv~vK~~~~~~al~ 88 (305)
T PRK05708 72 HRLLLACKAYDAEPAVA 88 (305)
T ss_pred CEEEEECCHHhHHHHHH
Confidence 48999999998887754
No 147
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=26.22 E-value=7.2e+02 Score=27.57 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=32.5
Q ss_pred ceEEEecCCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh---hHHHHc
Q 013562 54 RQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL---TLVEKF 130 (441)
Q Consensus 54 ~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~---~~A~~~ 130 (441)
.++++-|-.|++.+++. .++..+.+++.. ++..+.+.....+|+ .. ...++++-+.+. +..++.
T Consensus 444 ~~v~~GDat~~~~L~~a--gi~~A~~vv~~~---~d~~~n~~i~~~~r~----~~----p~~~IiaRa~~~~~~~~L~~~ 510 (601)
T PRK03659 444 YKVYYGDATQLELLRAA--GAEKAEAIVITC---NEPEDTMKIVELCQQ----HF----PHLHILARARGRVEAHELLQA 510 (601)
T ss_pred CeEEEeeCCCHHHHHhc--CCccCCEEEEEe---CCHHHHHHHHHHHHH----HC----CCCeEEEEeCCHHHHHHHHhC
Confidence 34444454554443332 333444433333 344555554445544 21 235677777654 455677
Q ss_pred CCC
Q 013562 131 GID 133 (441)
Q Consensus 131 gi~ 133 (441)
|.+
T Consensus 511 Ga~ 513 (601)
T PRK03659 511 GVT 513 (601)
T ss_pred CCC
Confidence 776
No 148
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=25.37 E-value=5.2e+02 Score=24.68 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=33.7
Q ss_pred EEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEec-----CCChHHHHHHhccCCCCcEEEEEECCC
Q 013562 22 VVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-----NVDPIDVAKSITGLNPETTLVVVVSKT 87 (441)
Q Consensus 22 vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-----n~Dp~~~~~~l~~l~~~~TlviviSKS 87 (441)
|+++|-.| .+|..++...+.. +.+++.++ =.|++.+.+++...++ +.+|..+..+
T Consensus 2 ilv~G~tG-~iG~~l~~~l~~~---------g~~v~~~~r~~~d~~~~~~~~~~~~~~~~-d~vi~~a~~~ 61 (287)
T TIGR01214 2 ILITGANG-QLGRELVQQLSPE---------GRVVVALTSSQLDLTDPEALERLLRAIRP-DAVVNTAAYT 61 (287)
T ss_pred EEEEcCCC-HHHHHHHHHHHhc---------CCEEEEeCCcccCCCCHHHHHHHHHhCCC-CEEEECCccc
Confidence 67777655 4677766655543 34565553 2477888888877543 5666666543
No 149
>PRK02399 hypothetical protein; Provisional
Probab=25.00 E-value=5.5e+02 Score=27.34 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=20.6
Q ss_pred EeeChhhhhhHHHHHhHhhhhhCCC
Q 013562 213 ILPYSQALEKFAPHIQQVSMESNGK 237 (441)
Q Consensus 213 l~~Y~~~L~~~~~w~qQL~aESlGK 237 (441)
+-.-.+..+.++.|+.+-+..+.|+
T Consensus 311 mRTt~eE~~~~g~~ia~kLn~a~gp 335 (406)
T PRK02399 311 MRTTPEENRQIGRWIAEKLNRAKGP 335 (406)
T ss_pred eecCHHHHHHHHHHHHHHHhcCCCC
Confidence 5556778889999999988888876
No 150
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=25.00 E-value=4.3e+02 Score=24.43 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=18.3
Q ss_pred ceeeeeeccCCCC------cCeEEEEccCccchHH
Q 013562 6 GKCFWQVGATGKV------LKDVVAVGIGGSFLGP 34 (441)
Q Consensus 6 ~~~~~~~g~~g~~------~~~vV~iGiGGS~LG~ 34 (441)
|.-.+..|..|.. -+++|+|+ ||+.++|
T Consensus 79 G~~v~i~gP~G~~~~~~~~~~~~llia-gG~GI~p 112 (224)
T cd06187 79 GDRVRLSGPYGTFYLRRDHDRPVLCIA-GGTGLAP 112 (224)
T ss_pred CCEEEEeCCccceEecCCCCCCEEEEe-cCcCHHH
Confidence 3445566655541 35788888 8888887
No 151
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=24.94 E-value=3.7e+02 Score=27.59 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=48.4
Q ss_pred CCceEEEecCC----ChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCC-h--
Q 013562 52 RGRQLRFLANV----DPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN-L-- 124 (441)
Q Consensus 52 ~~~~i~fv~n~----Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~-~-- 124 (441)
.+.++.+..+- ||+.+.+.++.+..++-+++-+| .| ||+.+.....+ + +.-+|+.|.. .
T Consensus 123 vd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-----~e---n~~~i~~lA~~-y-----~~~Vva~s~~Dln~ 188 (319)
T PRK04452 123 VDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-----ED---NYKKIAAAAMA-Y-----GHAVIAWSPLDINL 188 (319)
T ss_pred CCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC-----HH---HHHHHHHHHHH-h-----CCeEEEEcHHHHHH
Confidence 34566544332 99999999999998889988886 33 67766665433 2 3446666622 1
Q ss_pred -----hHHHHcCCCCCCee
Q 013562 125 -----TLVEKFGIDPNNAF 138 (441)
Q Consensus 125 -----~~A~~~gi~~~~~f 138 (441)
+++.++|+++++++
T Consensus 189 ak~L~~~l~~~Gi~~edIv 207 (319)
T PRK04452 189 AKQLNILLTELGVPRERIV 207 (319)
T ss_pred HHHHHHHHHHcCCCHHHEE
Confidence 45778999866644
No 152
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=24.85 E-value=2.6e+02 Score=28.89 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHH
Q 013562 165 FSVVEKFLKGAWSI 178 (441)
Q Consensus 165 ~d~~~~lL~GA~~m 178 (441)
.+ |++.|+-|+++
T Consensus 183 ~~-f~dal~eAq~l 195 (333)
T COG0460 183 LS-FEDALAEAQEL 195 (333)
T ss_pred CC-HHHHHHHHHHc
Confidence 46 88888888775
No 153
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=24.71 E-value=2.8e+02 Score=27.14 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=12.4
Q ss_pred EEEEEECCCCCCHHHHH
Q 013562 79 TLVVVVSKTFTTAETML 95 (441)
Q Consensus 79 TlviviSKSG~T~ETl~ 95 (441)
-+++++.|+..+.+++.
T Consensus 70 d~vilavk~~~~~~~~~ 86 (305)
T PRK12921 70 DLVILAVKAYQLDAAIP 86 (305)
T ss_pred CEEEEEecccCHHHHHH
Confidence 37888889887766653
No 154
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=24.58 E-value=4e+02 Score=27.13 Aligned_cols=86 Identities=5% Similarity=-0.026 Sum_probs=44.2
Q ss_pred CcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCCh-HHHHHHhccCCCCcEEEEEECCCCCCHHHHHH
Q 013562 18 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDP-IDVAKSITGLNPETTLVVVVSKTFTTAETMLN 96 (441)
Q Consensus 18 ~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp-~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~ 96 (441)
..+.+.++|-|-++ |.-++.-+|+-. |.. .++.- .+.. +..+--+.-+++...+|++++ ++.|.+...
T Consensus 207 ~~~~~~~lG~G~~y-~~A~~E~alKl~-----E~~--~i~a~-~~~~~Ef~HGP~~li~~~~~vi~l~~-~~~~~~~~~- 275 (340)
T PRK11382 207 QWPMIYTVAAGPLR-PLGYKEGIVTLM-----EFT--WTHGC-VIESGEFRHGPLEIVEPGVPFLFLLG-NDESRHTTE- 275 (340)
T ss_pred CCCcEEEEeCCCCH-HHHHHHHHHHHH-----HHh--hhhcc-cccHHHhccChHHHhcCCceEEEEEc-CcchHHHHH-
Confidence 45789999998665 443343344321 111 11221 2333 333333455665555566665 677765332
Q ss_pred HHHHHHHHHHhcCCcccCCeEEEEeC
Q 013562 97 ARTLREWISTALGPSAVAKHMVAVST 122 (441)
Q Consensus 97 ~~~~~~~l~~~~g~~~~~~~~vavT~ 122 (441)
.+.+.+.+. +.|+++|+.
T Consensus 276 --~~~~~l~~~------~~~v~~I~~ 293 (340)
T PRK11382 276 --RAINFVKQR------TDNVIVIDY 293 (340)
T ss_pred --HHHHHHHHC------CCeEEEEEC
Confidence 334434433 578888875
No 155
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=24.50 E-value=76 Score=34.26 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=34.0
Q ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCChhHHHHcCCC
Q 013562 77 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGID 133 (441)
Q Consensus 77 ~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~~~A~~~gi~ 133 (441)
.-.++|+.|+||.|..-++.|| ....++|+|.+.+.++.+.+-
T Consensus 373 ~akaIVv~T~SG~TA~~vSr~r--------------p~~PIiAvT~~~~v~R~L~L~ 415 (473)
T TIGR01064 373 DAKAIVVLTESGRTARLLSKYR--------------PNAPIIAVTPNERVARQLALY 415 (473)
T ss_pred CCCEEEEEcCChHHHHHHHhhC--------------CCCCEEEEcCCHHHHHHhhcc
Confidence 4458999999999998877553 356799999999888886554
No 156
>PRK08219 short chain dehydrogenase; Provisional
Probab=24.28 E-value=5.4e+02 Score=23.33 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=36.4
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchh------HHh-------hhCCceEEEecCCChHHHHHHhccCCCCcEEEEEECC
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLE------AIE-------CARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSK 86 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~------~~~-------~~~~~~i~fv~n~Dp~~~~~~l~~l~~~~TlviviSK 86 (441)
+.++|+|-+| .+|..++...+.. .. ... +..+..++-.|=.|++.+.+++..+.+-+.+|..+..
T Consensus 4 ~~vlVtG~~g-~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 81 (227)
T PRK08219 4 PTALITGASR-GIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGV 81 (227)
T ss_pred CEEEEecCCc-HHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 4688888776 5677666555433 10 000 0012233334555778888888766555677776654
No 157
>PLN02252 nitrate reductase [NADPH]
Probab=24.21 E-value=2.5e+02 Score=32.91 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=51.6
Q ss_pred cCeEEEEccCccchHH--HHHHHHhhcchhHHhhhCCceEEEe-cCCChHHH--HHHhccCC----CCcEEEEEECCCC-
Q 013562 19 LKDVVAVGIGGSFLGP--LFVHTALQTDLEAIECARGRQLRFL-ANVDPIDV--AKSITGLN----PETTLVVVVSKTF- 88 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~--~~l~~al~~~~~~~~~~~~~~i~fv-~n~Dp~~~--~~~l~~l~----~~~TlviviSKSG- 88 (441)
.+.+|.|+ |||.+.| .++..++... ....+++++ .|-+.+++ .+-|..+. ..=+++.+.|...
T Consensus 758 ~~~vvmIA-GGsGITPi~silr~ll~~~------~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~ 830 (888)
T PLN02252 758 AKKLAMLA-GGTGITPMYQVIQAILRDP------EDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKR 830 (888)
T ss_pred CceEEEEe-cceehhHHHHHHHHHHhcc------CCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCc
Confidence 46888887 8898888 2333344321 112345554 34444432 34444432 2224566677531
Q ss_pred --CCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--------hHHHHcCCCCCCeeee
Q 013562 89 --TTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--------TLVEKFGIDPNNAFAF 140 (441)
Q Consensus 89 --~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--------~~A~~~gi~~~~~f~i 140 (441)
-+-++- +.-.+.+++.... ......+.++.+. +..++.|+++++++.|
T Consensus 831 ~~w~g~~G---rV~~~ll~~~l~~-~~~~~~vyiCGPp~Mi~~av~~~L~~~G~~~~~I~~f 888 (888)
T PLN02252 831 EGWKYSVG---RVTEAMLREHLPE-GGDETLALMCGPPPMIEFACQPNLEKMGYDKDSILVF 888 (888)
T ss_pred CCCCCcCC---cCCHHHHHHhccc-CCCCeEEEEeCCHHHHHHHHHHHHHHcCCCHHHEEEC
Confidence 110110 0000111122111 1123467778664 2346789987777643
No 158
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=24.17 E-value=5.1e+02 Score=26.96 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=9.2
Q ss_pred CcCeEEEEccCc
Q 013562 18 VLKDVVAVGIGG 29 (441)
Q Consensus 18 ~~~~vV~iGiGG 29 (441)
.-++++++|.|-
T Consensus 230 ~~~~iiIiG~G~ 241 (453)
T PRK09496 230 PVKRVMIVGGGN 241 (453)
T ss_pred CCCEEEEECCCH
Confidence 357899999864
No 159
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=24.01 E-value=2.1e+02 Score=29.81 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=82.8
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCC-CCcEEEEEECCCCCCHHHHHHHH
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN-PETTLVVVVSKTFTTAETMLNAR 98 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~-~~~TlviviSKSG~T~ETl~~~~ 98 (441)
+.|-+|-=|||.-=|--. -+...-.. . .-..=.++.+-.+.++.+.++.++ ++-+|+||--+||. ..||.
T Consensus 44 ~kValIsGGGSGHEPah~-GyVG~GmL---d-AAv~G~VFaSPs~~qI~~ai~av~~~~GvLlivkNYtGD----vlNF~ 114 (356)
T PRK11468 44 GKVALLSGGGSGHEPMHC-GFVGQGML---D-GACPGEIFTSPTPDQMFECAMQVDGGEGVLLIIKNYTGD----VLNFE 114 (356)
T ss_pred CcEEEEecCCcccccccc-ceecCCcc---c-ceeeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHh----hccHH
Confidence 467788889996544211 01110000 0 001112344567888888887765 46788888889998 77899
Q ss_pred HHHHHHHHhcCCcccCCeEEEEeCChhHHHHcCCCCCCeeeeccccCCcchhhhcchhhhhhhccCchHHHHHHHHHHHH
Q 013562 99 TLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSI 178 (441)
Q Consensus 99 ~~~~~l~~~~g~~~~~~~~vavT~~~~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vGLlp~al~~G~d~~~~lL~GA~~m 178 (441)
.+.++.+.. | ..-.+|.|++........... =..+|.|=.-++=-.| .+|- -|.+ ++++.+-|+.+
T Consensus 115 mAaE~a~~e-G---i~v~~V~V~DDva~~~~~~~~------gRRGlAGtvlv~KiaG--AaAe-~G~s-L~ev~~~a~~~ 180 (356)
T PRK11468 115 TATELLHDS-G---VKVTTVLIDDDVAVKDSLYTA------GRRGVANTVLIEKLVG--AAAE-RGYS-LDQCAELGRKL 180 (356)
T ss_pred HHHHHHHhC-C---CcEEEEEeCCcccCCCCcCCC------CCcchhHHHHHHHHHH--HHHh-CCCC-HHHHHHHHHHH
Confidence 998887654 3 245678887654332211100 0122333333444445 2333 4899 89999999998
Q ss_pred HHHhhC
Q 013562 179 DQHFIS 184 (441)
Q Consensus 179 ~~~~~~ 184 (441)
.+++++
T Consensus 181 ~~~~~T 186 (356)
T PRK11468 181 NNQGHS 186 (356)
T ss_pred HHhcce
Confidence 888654
No 160
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=23.78 E-value=1.6e+02 Score=27.65 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=11.9
Q ss_pred cCeEEEEccCccchHH
Q 013562 19 LKDVVAVGIGGSFLGP 34 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~ 34 (441)
.+++|+|+ ||+.++|
T Consensus 107 ~~~~vlia-gG~Giap 121 (235)
T cd06217 107 GDPVVLLA-GGSGIVP 121 (235)
T ss_pred CceEEEEe-cCcCccH
Confidence 46788888 7888877
No 161
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.76 E-value=5.2e+02 Score=26.14 Aligned_cols=14 Identities=43% Similarity=0.508 Sum_probs=12.0
Q ss_pred CeEEEEccCccchHH
Q 013562 20 KDVVAVGIGGSFLGP 34 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~ 34 (441)
+++|+|+ ||+.+.|
T Consensus 110 ~~~llia-gG~GItP 123 (352)
T TIGR02160 110 GHYVAVA-AGSGITP 123 (352)
T ss_pred ccEEEEe-ccccHhH
Confidence 6788888 8999888
No 162
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=23.67 E-value=5.4e+02 Score=25.46 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=28.5
Q ss_pred eEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCCC
Q 013562 21 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 76 (441)
Q Consensus 21 ~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~~ 76 (441)
+|.+||+|.- |. .+.+.+.+. ..+.++.++-..|++...++.+.+..
T Consensus 2 ~vgiVGcGaI--G~-~l~e~v~~~------~~~~e~v~v~D~~~ek~~~~~~~~~~ 48 (255)
T COG1712 2 KVGIVGCGAI--GK-FLLELVRDG------RVDFELVAVYDRDEEKAKELEASVGR 48 (255)
T ss_pred eEEEEeccHH--HH-HHHHHHhcC------CcceeEEEEecCCHHHHHHHHhhcCC
Confidence 4778898875 44 344565542 12356666666788777766655543
No 163
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=23.31 E-value=5.8e+02 Score=24.52 Aligned_cols=92 Identities=11% Similarity=0.161 Sum_probs=44.2
Q ss_pred EEEEccCccchHHHHHHHHhhcchh----H--Hh--hhCCceEEEecCCChHHHHHHhcc---CCC-CcEEEEEECCCCC
Q 013562 22 VVAVGIGGSFLGPLFVHTALQTDLE----A--IE--CARGRQLRFLANVDPIDVAKSITG---LNP-ETTLVVVVSKTFT 89 (441)
Q Consensus 22 vV~iGiGGS~LG~~~l~~al~~~~~----~--~~--~~~~~~i~fv~n~Dp~~~~~~l~~---l~~-~~TlviviSKSG~ 89 (441)
|+|+|.-|. +|..++.+.+..-.+ . .+ ...+....-.|-.|++.+.+.++. +.. -+++|.+.+....
T Consensus 2 ilVtGatG~-iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~ 80 (285)
T TIGR03649 2 ILLTGGTGK-TASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD 80 (285)
T ss_pred EEEEcCCCh-HHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCC
Confidence 677776655 577666554432110 0 00 001122334466788888887742 233 4566666554332
Q ss_pred CHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeC
Q 013562 90 TAETMLNARTLREWISTALGPSAVAKHMVAVST 122 (441)
Q Consensus 90 T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~ 122 (441)
..+.. +.+.+...+. | -+|||.+++
T Consensus 81 ~~~~~---~~~i~aa~~~-g----v~~~V~~Ss 105 (285)
T TIGR03649 81 LAPPM---IKFIDFARSK-G----VRRFVLLSA 105 (285)
T ss_pred hhHHH---HHHHHHHHHc-C----CCEEEEeec
Confidence 22222 2223332222 1 367887764
No 164
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=23.02 E-value=4.6e+02 Score=23.72 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=15.1
Q ss_pred CceEEEecCCChHHHHHHhccCC
Q 013562 53 GRQLRFLANVDPIDVAKSITGLN 75 (441)
Q Consensus 53 ~~~i~fv~n~Dp~~~~~~l~~l~ 75 (441)
+.++.+++|.+...+...++.+.
T Consensus 108 g~~~~i~Sn~~~~~~~~~l~~~g 130 (198)
T TIGR01428 108 GYRLAILSNGSPAMLKSLVKHAG 130 (198)
T ss_pred CCeEEEEeCCCHHHHHHHHHHCC
Confidence 46677777777666666666554
No 165
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=22.68 E-value=2.8e+02 Score=26.26 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=12.4
Q ss_pred cCeEEEEccCccchHHH
Q 013562 19 LKDVVAVGIGGSFLGPL 35 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~~ 35 (441)
.+++|.|+ ||+.++|-
T Consensus 113 ~~~lllia-gGtGiaP~ 128 (247)
T cd06184 113 DRPLVLIS-AGVGITPM 128 (247)
T ss_pred CCcEEEEe-ccccHhHH
Confidence 46788888 88888873
No 166
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=22.64 E-value=4.4e+02 Score=31.52 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=15.2
Q ss_pred CCCcCeEEEEccCccchH
Q 013562 16 GKVLKDVVAVGIGGSFLG 33 (441)
Q Consensus 16 g~~~~~vV~iGiGGS~LG 33 (441)
.+.++.|++||-|++.+|
T Consensus 4 ~~~~~kvlviG~G~~~ig 21 (1068)
T PRK12815 4 DTDIQKILVIGSGPIVIG 21 (1068)
T ss_pred CCCCCEEEEECCCcchhc
Confidence 356899999999999775
No 167
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=22.56 E-value=3.8e+02 Score=26.79 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=7.9
Q ss_pred eEEEEccCcc
Q 013562 21 DVVAVGIGGS 30 (441)
Q Consensus 21 ~vV~iGiGGS 30 (441)
.|.+||.|+.
T Consensus 2 kI~IIGaG~v 11 (306)
T cd05291 2 KVVIIGAGHV 11 (306)
T ss_pred EEEEECCCHH
Confidence 5899999853
No 168
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=22.49 E-value=5.1e+02 Score=30.92 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=15.2
Q ss_pred CCCcCeEEEEccCccchH
Q 013562 16 GKVLKDVVAVGIGGSFLG 33 (441)
Q Consensus 16 g~~~~~vV~iGiGGS~LG 33 (441)
.+.++.|++||-|...+|
T Consensus 3 ~~~~~kvlviG~g~~~ig 20 (1050)
T TIGR01369 3 RTDIKKILVIGSGPIVIG 20 (1050)
T ss_pred CCCCcEEEEECCCcchhc
Confidence 356899999999988776
No 169
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=22.22 E-value=3.3e+02 Score=25.99 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=47.4
Q ss_pred cchHHHHHHHHhhcchhHHhhhCCceEEEec-CCChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHh
Q 013562 30 SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTA 107 (441)
Q Consensus 30 S~LG~~~l~~al~~~~~~~~~~~~~~i~fv~-n~Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~ 107 (441)
-++|-.++...|+. .+.+++++. ++.++.+.+...+.++. +|.+|-+= .-|+..++.+.+.|++.
T Consensus 101 HdiG~~iv~~~l~~--------~G~~Vi~LG~~vp~e~~v~~~~~~~~~---~V~lS~~~--~~~~~~~~~~i~~L~~~ 166 (213)
T cd02069 101 HDIGKNLVGVILSN--------NGYEVIDLGVMVPIEKILEAAKEHKAD---IIGLSGLL--VPSLDEMVEVAEEMNRR 166 (213)
T ss_pred hHHHHHHHHHHHHh--------CCCEEEECCCCCCHHHHHHHHHHcCCC---EEEEccch--hccHHHHHHHHHHHHhc
Confidence 47899999888865 478999996 89999999999887765 55554432 23455567777777665
No 170
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=21.95 E-value=3.1e+02 Score=24.53 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=21.7
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHhccCC
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN 75 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l~~l~ 75 (441)
++|+++|-+.. -.+-+...|.. .+..+..++. +..++.+..+..|
T Consensus 29 k~v~VvGrs~~--vG~pla~lL~~--------~gatV~~~~~-~t~~l~~~v~~AD 73 (140)
T cd05212 29 KKVLVVGRSGI--VGAPLQCLLQR--------DGATVYSCDW-KTIQLQSKVHDAD 73 (140)
T ss_pred CEEEEECCCch--HHHHHHHHHHH--------CCCEEEEeCC-CCcCHHHHHhhCC
Confidence 46777666555 34444444432 2455666642 1123444455443
No 171
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=21.87 E-value=5.4e+02 Score=22.48 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=7.1
Q ss_pred CceEEEecCCChHH
Q 013562 53 GRQLRFLANVDPID 66 (441)
Q Consensus 53 ~~~i~fv~n~Dp~~ 66 (441)
+.++.+++|.+...
T Consensus 101 g~~~~i~Tn~~~~~ 114 (183)
T TIGR01509 101 GKKLALLTNSPRDH 114 (183)
T ss_pred CCeEEEEeCCchHH
Confidence 34555555555444
No 172
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=21.53 E-value=5.1e+02 Score=25.90 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=17.6
Q ss_pred hHHHHcCCCCCCeeeeccccCCcchhhhcch
Q 013562 125 TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVG 155 (441)
Q Consensus 125 ~~A~~~gi~~~~~f~ip~~VGGRfSv~S~vG 155 (441)
+.+++.|++ ...+.+++|+++..++.-
T Consensus 250 ~~a~~~Gv~----~~~~~~lpg~vap~ta~~ 276 (296)
T PRK08306 250 EYAEKRGIK----ALLAPGLPGKVAPKTAGQ 276 (296)
T ss_pred eehhhCCeE----EEEECCCCccCCHHHHHH
Confidence 567888886 344567777775555544
No 173
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=21.51 E-value=8.7e+02 Score=24.72 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=45.3
Q ss_pred cCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhc-CCcccCCeEEEEeCCh------hHHHHcCCCCCCe--eeeccc
Q 013562 73 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTAL-GPSAVAKHMVAVSTNL------TLVEKFGIDPNNA--FAFWDW 143 (441)
Q Consensus 73 ~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~-g~~~~~~~~vavT~~~------~~A~~~gi~~~~~--f~ip~~ 143 (441)
...+++..++++| |-..++... +.+ .. |- ..++++++|... -+|+++|+++.++ +.++.+
T Consensus 117 ~~~~~~~iiivvs---NPvDv~t~v--~~k----~s~g~--p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~Ge 185 (323)
T TIGR01759 117 KVAKKDVKVLVVG---NPANTNALI--ASK----NAPDI--PPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGN 185 (323)
T ss_pred hhCCCCeEEEEeC---CcHHHHHHH--HHH----HcCCC--CHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEec
Confidence 3345578888886 777777522 222 22 22 256788875322 3789999998876 457787
Q ss_pred cCCc-chhhhcc
Q 013562 144 VGGR-YSVCSAV 154 (441)
Q Consensus 144 VGGR-fSv~S~v 154 (441)
-|.. |-+||.+
T Consensus 186 HG~s~v~~~S~~ 197 (323)
T TIGR01759 186 HSNTQVPDFTHA 197 (323)
T ss_pred CCCceeeccccC
Confidence 7754 5557766
No 174
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=21.49 E-value=6.4e+02 Score=23.19 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=19.4
Q ss_pred ceeeeeeccCCCC-----cCeEEEEccCccchHH
Q 013562 6 GKCFWQVGATGKV-----LKDVVAVGIGGSFLGP 34 (441)
Q Consensus 6 ~~~~~~~g~~g~~-----~~~vV~iGiGGS~LG~ 34 (441)
|.-.|.+|..|.- .+++|+|+ ||+.++|
T Consensus 77 G~~v~i~gP~G~~~~~~~~~~~vlia-~GtGiap 109 (216)
T cd06198 77 GTRVTVEGPYGRFTFDDRRARQIWIA-GGIGITP 109 (216)
T ss_pred CCEEEEECCCCCCcccccCceEEEEc-cccCHHH
Confidence 4445666766531 46899998 8888887
No 175
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=21.02 E-value=6e+02 Score=23.53 Aligned_cols=84 Identities=8% Similarity=0.061 Sum_probs=46.7
Q ss_pred CCceEEEecCCChHHHHHHhccCCCCcEE-EEEECCCC----CCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCC---
Q 013562 52 RGRQLRFLANVDPIDVAKSITGLNPETTL-VVVVSKTF----TTAETMLNARTLREWISTALGPSAVAKHMVAVSTN--- 123 (441)
Q Consensus 52 ~~~~i~fv~n~Dp~~~~~~l~~l~~~~Tl-viviSKSG----~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~--- 123 (441)
.+.++.+++|.....+...++.+...+.. .++.|... ...|. + ..+++ ++|.. ..+++.|.+.
T Consensus 107 ~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~---~---~~~~~-~~~~~--~~~~~~igDs~~D 177 (222)
T PRK10826 107 QGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEV---Y---LNCAA-KLGVD--PLTCVALEDSFNG 177 (222)
T ss_pred CCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHH---H---HHHHH-HcCCC--HHHeEEEcCChhh
Confidence 45788888887777777777766543322 23333221 12222 2 22232 34432 3567777764
Q ss_pred hhHHHHcCCCCCCeeeeccccCCc
Q 013562 124 LTLVEKFGIDPNNAFAFWDWVGGR 147 (441)
Q Consensus 124 ~~~A~~~gi~~~~~f~ip~~VGGR 147 (441)
.+.|++.|++ ++-+++...++
T Consensus 178 i~aA~~aG~~---~i~v~~~~~~~ 198 (222)
T PRK10826 178 MIAAKAARMR---SIVVPAPEQQN 198 (222)
T ss_pred HHHHHHcCCE---EEEecCCccCc
Confidence 3678888887 66665554443
No 176
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=20.98 E-value=7e+02 Score=25.05 Aligned_cols=76 Identities=13% Similarity=-0.002 Sum_probs=40.1
Q ss_pred CCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecC-----------CChHHH-----HHHhccCCCCcEE
Q 013562 17 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLAN-----------VDPIDV-----AKSITGLNPETTL 80 (441)
Q Consensus 17 ~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n-----------~Dp~~~-----~~~l~~l~~~~Tl 80 (441)
...+.+++||-|+..+=.-++. .- .++..+|- .+...+ ..+.+..+.++..
T Consensus 147 ~~~~~~l~IG~g~fh~~~l~l~-~~------------~~v~~~dP~~~~~~~e~~~~~~~~~l~~R~~~i~ka~~a~~~G 213 (307)
T PF01866_consen 147 DDDDAILFIGGGRFHLLGLMLS-PG------------KPVYRYDPYSKTLSVEDISYDIERLLRRRYALIEKAKDAKTFG 213 (307)
T ss_dssp -S-SEEEEESSSSHHHHHHHHH-H-------------SEEEEE-TT--T--EEE----THHHHHHHHHHHHHHTT--EEE
T ss_pred ccccEEEEEcCCchHHHHHHHh-cC------------CCEEEeCCCcccceeecccccHHHHHHHHHHHHHHHhcCCEEE
Confidence 3568999999999887655554 11 12222221 233222 2223344667788
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHh
Q 013562 81 VVVVSKTFTTAETMLNARTLREWISTA 107 (441)
Q Consensus 81 viviSKSG~T~ETl~~~~~~~~~l~~~ 107 (441)
+|+.|++|.--- ..++.++++++++
T Consensus 214 Iiv~tl~~q~~~--~~~~~l~~~l~~~ 238 (307)
T PF01866_consen 214 IIVGTLGGQGYL--ELIKRLKKLLKKA 238 (307)
T ss_dssp EEEE-STTT--H--HHHHHHHHHHHHT
T ss_pred EEEecCCCCCCH--HHHHHHHHHHHHc
Confidence 888889987543 3457777877775
No 177
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.96 E-value=1.4e+02 Score=30.54 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=27.5
Q ss_pred CCcCeEEEEccC--ccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHH
Q 013562 17 KVLKDVVAVGIG--GSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS 70 (441)
Q Consensus 17 ~~~~~vV~iGiG--GS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~ 70 (441)
.+++.|.|||.| |+.++..++. .+.+++.+| .+|+.+.+.
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~-------------aG~~V~l~D-~~~~~~~~~ 46 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALA-------------HGLDVVAWD-PAPGAEAAL 46 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh-------------CCCeEEEEe-CCHHHHHHH
Confidence 458899999999 7776665542 356888887 566655443
No 178
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=20.51 E-value=9.3e+02 Score=24.68 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=42.5
Q ss_pred CCCcCeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHH-----HHHhccCCCCcEEEEEECCCCCC
Q 013562 16 GKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-----AKSITGLNPETTLVVVVSKTFTT 90 (441)
Q Consensus 16 g~~~~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~-----~~~l~~l~~~~TlviviSKSG~T 90 (441)
+...+.++++|-|...+-.-++.. -++-... +.-..++.-. +.|...+ ..+-+..+.++.-+++.||+|--
T Consensus 171 ~~~~d~~l~vg~g~FH~~~~~l~~-~~~v~~~--DP~s~~~~~~-~~~~~~~l~rR~~~I~ka~~A~~vGIlvgTl~~q~ 246 (332)
T TIGR00322 171 GEQADAMVFIGDGRFHPLGAAIHT-EKEVFKY--DPYSGEFTRI-GEDAKQFVKVRALAISKARKGKKFGVVLSSKGGQG 246 (332)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHc-CCcEEEE--CCCCCceeEc-cccHHHHHHHHHHHHHHHhcCCEEEEEEecCccCC
Confidence 456688999998877654444432 1110000 0001111111 1233222 12223345677889999998853
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013562 91 AETMLNARTLREWISTA 107 (441)
Q Consensus 91 ~ETl~~~~~~~~~l~~~ 107 (441)
+...++.+++.++++
T Consensus 247 --~~~~~~~l~~ll~~~ 261 (332)
T TIGR00322 247 --RLRLAKNLKKNLEEA 261 (332)
T ss_pred --CHHHHHHHHHHHHHc
Confidence 233445666666665
No 179
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=20.38 E-value=3.1e+02 Score=25.74 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=11.6
Q ss_pred cCeEEEEccCccchHH
Q 013562 19 LKDVVAVGIGGSFLGP 34 (441)
Q Consensus 19 ~~~vV~iGiGGS~LG~ 34 (441)
.+++|.|+ ||+.++|
T Consensus 108 ~~~~vlia-gGtGiaP 122 (236)
T cd06210 108 LRPRWFVA-GGTGLAP 122 (236)
T ss_pred CccEEEEc-cCcchhH
Confidence 35788888 6798887
No 180
>PRK12743 oxidoreductase; Provisional
Probab=20.23 E-value=3.5e+02 Score=25.52 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=24.9
Q ss_pred CeEEEEccCccchHHHHHHHHhhcchhHHhhhCCceEEEecCCChHHHHHHh
Q 013562 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 71 (441)
Q Consensus 20 ~~vV~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~i~fv~n~Dp~~~~~~l 71 (441)
+.++|.| |.|.+|-.++...+.. +.++.++...+.....++.
T Consensus 3 k~vlItG-as~giG~~~a~~l~~~---------G~~V~~~~~~~~~~~~~~~ 44 (256)
T PRK12743 3 QVAIVTA-SDSGIGKACALLLAQQ---------GFDIGITWHSDEEGAKETA 44 (256)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHC---------CCEEEEEeCCChHHHHHHH
Confidence 3577877 5677888777666543 4466665444444444433
No 181
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=20.17 E-value=2.3e+02 Score=28.18 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=55.3
Q ss_pred hHHHHHHHHhhcchhHHhhhCCceEEEec---CCChHHHHHHh----ccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Q 013562 32 LGPLFVHTALQTDLEAIECARGRQLRFLA---NVDPIDVAKSI----TGLNPETTLVVVVSKTFTTAETMLNARTLREWI 104 (441)
Q Consensus 32 LG~~~l~~al~~~~~~~~~~~~~~i~fv~---n~Dp~~~~~~l----~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l 104 (441)
+|.-.+.+.+.+..- ++.++.++++. -.+|+++.+.. +.++| -++|++|--+.+.-+- .+|+.|
T Consensus 12 ig~s~~idl~LDErA---dRedI~vrv~gsGaKm~pe~~e~~~~~~~~~~~p--df~I~isPN~~~PGP~----~ARE~l 82 (276)
T PF01993_consen 12 IGTSVVIDLLLDERA---DREDIDVRVVGSGAKMGPEDVEEVVTKMLKEWDP--DFVIVISPNAAAPGPT----KAREML 82 (276)
T ss_dssp -HHHHHTTGGGSTTS-----SSEEEEEEEEET--SHHHHHHHHHHHHHHH----SEEEEE-S-TTSHHHH----HHHHHH
T ss_pred cchHHHHHHHHHhhh---ccCCceEEEeccCCCCCHHHHHHHHHHHHHhhCC--CEEEEECCCCCCCCcH----HHHHHH
Confidence 455556666666421 23467888885 48888776544 44444 5888999988888775 366666
Q ss_pred HHhcCCcccCCeEEEEeCCh-----hH--HHHcCCCCCCeeeeccccCCcchhhhcch
Q 013562 105 STALGPSAVAKHMVAVSTNL-----TL--VEKFGIDPNNAFAFWDWVGGRYSVCSAVG 155 (441)
Q Consensus 105 ~~~~g~~~~~~~~vavT~~~-----~~--A~~~gi~~~~~f~ip~~VGGRfSv~S~vG 155 (441)
.++ +.-.|+||+.. +. .+-||+- +.+..+-||-|--+|-++=
T Consensus 83 ~~~------~iP~IvI~D~p~~k~kd~l~~~g~GYI---ivk~DpMIGArREFLDP~E 131 (276)
T PF01993_consen 83 SAK------GIPCIVISDAPTKKAKDALEEEGFGYI---IVKADPMIGARREFLDPVE 131 (276)
T ss_dssp HHS------SS-EEEEEEGGGGGGHHHHHHTT-EEE---EETTS------TTT--HHH
T ss_pred HhC------CCCEEEEcCCCchhhHHHHHhcCCcEE---EEecCccccccccccCHHH
Confidence 544 45678899753 22 2335554 4555667888877777665
No 182
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=20.06 E-value=2.6e+02 Score=23.20 Aligned_cols=67 Identities=19% Similarity=0.314 Sum_probs=40.7
Q ss_pred CCceEEEecCC---ChHHHHHHhccCCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCcccCCeEEEEeCCh--hH
Q 013562 52 RGRQLRFLANV---DPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TL 126 (441)
Q Consensus 52 ~~~~i~fv~n~---Dp~~~~~~l~~l~~~~TlviviSKSG~T~ETl~~~~~~~~~l~~~~g~~~~~~~~vavT~~~--~~ 126 (441)
.+.++.|++|. .+..+.+.|..+.-. -...|.+.....+.++|.++.+ .+++.++.+.. +.
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~~L~~~Gi~----------~~~~~i~ts~~~~~~~l~~~~~----~~~v~vlG~~~l~~~ 94 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAKKLKKLGIP----------VDEDEIITSGMAAAEYLKEHKG----GKKVYVLGSDGLREE 94 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHHHHHHTTTT------------GGGEEEHHHHHHHHHHHHTT----SSEEEEES-HHHHHH
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHhcCcC----------CCcCEEEChHHHHHHHHHhcCC----CCEEEEEcCHHHHHH
Confidence 46899999864 346677777766533 1234556666777888877522 56777777653 56
Q ss_pred HHHcCC
Q 013562 127 VEKFGI 132 (441)
Q Consensus 127 A~~~gi 132 (441)
.++.|+
T Consensus 95 l~~~G~ 100 (101)
T PF13344_consen 95 LREAGF 100 (101)
T ss_dssp HHHTTE
T ss_pred HHHcCC
Confidence 666664
No 183
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=20.02 E-value=9.1e+02 Score=24.37 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=9.9
Q ss_pred CeEEEEccC--ccchHH
Q 013562 20 KDVVAVGIG--GSFLGP 34 (441)
Q Consensus 20 ~~vV~iGiG--GS~LG~ 34 (441)
..|.+||.| ||.++-
T Consensus 4 ~Ki~IiGaG~VG~~~a~ 20 (312)
T cd05293 4 NKVTVVGVGQVGMACAI 20 (312)
T ss_pred CEEEEECCCHHHHHHHH
Confidence 468999987 444433
Done!