RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013562
(441 letters)
>3ujh_A Glucose-6-phosphate isomerase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease; HET: G6Q;
2.10A {Toxoplasma gondii}
Length = 567
Score = 685 bits (1770), Expect = 0.0
Identities = 249/421 (59%), Positives = 309/421 (73%), Gaps = 6/421 (1%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 72
G TGK L +V+++GIGGS+LG FVH AL + A E A GRQ+ FLANVDP+DV +
Sbjct: 145 GHTGKKLVNVISIGIGGSYLGTEFVHLALAAEGYAAEKAHGRQIHFLANVDPVDVWLAER 204
Query: 73 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG--PSAVAKHMVAVSTNLTLVEKF 130
G +PE TLVVV+SKTFTTAETM+NAR++R+W A+ H AVSTNL KF
Sbjct: 205 GFDPEETLVVVISKTFTTAETMMNARSVRDWYLHHYKGDERALGAHFCAVSTNLDGTSKF 264
Query: 131 GIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKN 190
GI + F FWDWVGGRYSV SAVG+LPL+LQYG+ V ++FL GA ++D HF +A N
Sbjct: 265 GIQSDRVFGFWDWVGGRYSVTSAVGILPLALQYGYDVAQEFLNGAHAMDVHFKTAELADN 324
Query: 191 IPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEA 250
+P+L+GL+S+WN +F G+ A+LPY+QAL +F HIQQ++MESNGK V++DG L F+
Sbjct: 325 LPMLMGLISVWNATFFGYSNVAVLPYAQALLRFPAHIQQLTMESNGKRVTMDGKTLDFDV 384
Query: 251 GEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQ 310
GEI FGEPGTNGQHSFYQLIHQGRVIP +FIG KSQ+ + LK E VSNHDELMSNFFAQ
Sbjct: 385 GEIFFGEPGTNGQHSFYQLIHQGRVIPAEFIGFCKSQRAIKLKEEPVSNHDELMSNFFAQ 444
Query: 311 PDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAV 370
PDALA GKTPE+L+KE + L+PHKTF G+RPS LL P ++ ++IGQLLA+YEHR+AV
Sbjct: 445 PDALAFGKTPEELRKEGIPEKLVPHKTFPGDRPSCMLLFPEISPFHIGQLLALYEHRVAV 504
Query: 371 EGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREP----IEGFNFSTTTLLTRYLEA 426
EG++WGINSFDQWGVELGK LA VR L R + P ST +L Y++
Sbjct: 505 EGWLWGINSFDQWGVELGKVLAKGVRGILQKRREGKAPHESGQSELCSSTRKILEHYVQQ 564
Query: 427 S 427
S
Sbjct: 565 S 565
>3qki_A Glucose-6-phosphate isomerase; structural genomics, structural
genomics consortium, SGC; 1.92A {Plasmodium falciparum}
PDB: 3pr3_A
Length = 597
Score = 672 bits (1735), Expect = 0.0
Identities = 221/437 (50%), Positives = 287/437 (65%), Gaps = 24/437 (5%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQ----------------- 55
K+V+ +GIGGS+LG FV+ A++ +E + +
Sbjct: 160 TCKNTKFKNVICIGIGGSYLGTEFVYEAMKYYYYNMELNKNEKDQVNNFNNNYDQDNVFN 219
Query: 56 LRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG-PSAVA 114
+RFLANVDP DV ++I L+ TLV+++SKTFTTAETMLNAR++++W+S + ++
Sbjct: 220 VRFLANVDPNDVNRAIQNLDQYDTLVIIISKTFTTAETMLNARSIKKWLSLKIKDDENLS 279
Query: 115 KHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKG 174
KHMVAVSTNL L ++FGI +N F FWDWVGGR+SV S+VG+LPLS+ +G+ + FL G
Sbjct: 280 KHMVAVSTNLKLTDEFGISRDNVFEFWDWVGGRFSVTSSVGILPLSIAFGYKNMRNFLNG 339
Query: 175 AWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMES 234
+D+HF+ A ++NIPVLL L S +N F + AILPY Q L KF+ HIQQ+SMES
Sbjct: 340 CHDMDEHFLHADLKENIPVLLALTSFYNSHFFDYKNVAILPYFQNLLKFSAHIQQLSMES 399
Query: 235 NGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKG 294
NGK V + P+ + ++ FGEPGTNGQHSFYQLIHQG+VIP + IG S P+
Sbjct: 400 NGKSVDRNNQPIHYNTCQVYFGEPGTNGQHSFYQLIHQGQVIPVELIGFKHSHFPIKFDK 459
Query: 295 EVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVA----PHLIPHKTFSGNRPSLSLLLP 350
EVVSNHDELM+NFFAQ DALA+GKT EQ+++EN P L+ HK F+GNRPS LL
Sbjct: 460 EVVSNHDELMTNFFAQADALAIGKTYEQVKEENEKNKMSPELLTHKVFNGNRPSTLLLFD 519
Query: 351 SLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRM--KREP 408
LN Y G LL++YE RI EGF+ INSFDQWGVELGK LA +VR + +R K +
Sbjct: 520 ELNFYTCGLLLSLYESRIVAEGFLLNINSFDQWGVELGKVLAKEVRNYFNDTRNQKKSDN 579
Query: 409 IEGFNFSTTTLLTRYLE 425
FN ST LL YL
Sbjct: 580 TYNFNESTKILLNYYLS 596
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis,
5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis;
2.25A {Mycobacterium tuberculosis}
Length = 549
Score = 662 bits (1709), Expect = 0.0
Identities = 200/414 (48%), Positives = 263/414 (63%), Gaps = 10/414 (2%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 72
GATGK + VV +GIGGS LGP+ V+ AL+ G RF++NVDP D+ ++
Sbjct: 137 GATGKRISTVVNIGIGGSDLGPVMVYQALRH-----YADAGISARFVSNVDPADLIATLA 191
Query: 73 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGI 132
L+P TTL +V SKTF+T ET+ NA R W++ ALG +AV++H VAVSTN LV+ FGI
Sbjct: 192 DLDPATTLFIVASKTFSTLETLTNATAARRWLTDALGDAAVSRHFVAVSTNKRLVDDFGI 251
Query: 133 DPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIP 192
+ +N F FWDWVGGRYSV SA+G L L G FL G ID+HF +AP E N P
Sbjct: 252 NTDNMFGFWDWVGGRYSVDSAIG-LSLMTVIGRDAFADFLAGFHIIDRHFATAPLESNAP 310
Query: 193 VLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGE 252
VLLGL+ +W +F G +R +LPYS L +F ++QQ++MESNGK DG P+ + GE
Sbjct: 311 VLLGLIGLWYSNFFGAQSRTVLPYSNDLSRFPAYLQQLTMESNGKSTRADGSPVSADTGE 370
Query: 253 IDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQP 311
I +GEPGTNGQH+FYQL+HQG R++P DFIG + + S HD LMSNFFAQ
Sbjct: 371 IFWGEPGTNGQHAFYQLLHQGTRLVPADFIGFAQPLDDLPTAEGTGSMHDLLMSNFFAQT 430
Query: 312 DALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVE 371
LA GKT E++ + H++ HK GNRPS S+L L +GQL+A+YEH++ E
Sbjct: 431 QVLAFGKTAEEIAADGTPAHVVAHKVMPGNRPSTSILASRLTPSVLGQLIALYEHQVFTE 490
Query: 372 GFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYLE 425
G +WGI+SFDQWGVELGK+ A + + + P + ST L+ RY
Sbjct: 491 GVVWGIDSFDQWGVELGKTQAKALLPVITGA---GSPPPQSDSSTDGLVRRYRT 541
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A
2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A
1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A
1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Length = 557
Score = 643 bits (1662), Expect = 0.0
Identities = 199/423 (47%), Positives = 271/423 (64%), Gaps = 24/423 (5%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 72
G TGK + D++ +GIGGS LGPL V AL+ G ++ F++N+D +AK++
Sbjct: 143 GYTGKSITDIINIGIGGSDLGPLMVTEALKP-----YSKGGPRVWFVSNIDGTHIAKTLA 197
Query: 73 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG-PSAVAKHMVAVSTNLTLVEKFG 131
L+PET+L ++ SKTFTT ET+ NA T +EW A PSAVAKH VA+STN V++FG
Sbjct: 198 SLSPETSLFIIASKTFTTQETITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAKVKEFG 257
Query: 132 IDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNI 191
IDP N F FWDWVGGRYS+ SA+G L ++L GF E+ L GA +DQHF+ P EKN
Sbjct: 258 IDPQNMFEFWDWVGGRYSLWSAIG-LSIALHVGFDHFEQLLSGAHWMDQHFLKTPLEKNA 316
Query: 192 PVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAG 251
PVLL LL IW ++ G A+LPY Q + +FA + QQ MESNGK ++ G + + G
Sbjct: 317 PVLLALLGIWYINCYGCETHALLPYDQYMHRFAAYFQQGDMESNGKYITKSGARVDHQTG 376
Query: 252 EIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQ 310
I +GEPGTNGQH+FYQLIHQG ++IPCDF+ V++Q P+ +H L++NF AQ
Sbjct: 377 PIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPI----RKGLHHKILLANFLAQ 432
Query: 311 PDALAVGKTPEQLQKENVAP--------HLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLA 362
+AL GK PE+ +KE A L+PHK F GNRP+ S++ L + +G L+A
Sbjct: 433 TEALMKGKLPEEARKELQAAGKSPEDLEKLLPHKVFEGNRPTNSIVFTKLTPFILGALIA 492
Query: 363 IYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTR 422
+YEH+I V+G +W INSFDQWGVELGK LA ++ +L S + + ST L++
Sbjct: 493 MYEHKIFVQGIMWDINSFDQWGVELGKQLAKKIEPELEGS----SAVTSHDSSTNGLISF 548
Query: 423 YLE 425
+
Sbjct: 549 IKQ 551
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733,
cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES;
1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A*
3q88_A*
Length = 543
Score = 641 bits (1657), Expect = 0.0
Identities = 164/421 (38%), Positives = 251/421 (59%), Gaps = 24/421 (5%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 72
G +GK + D+V +GIGGS LGP V ALQ ++ F++NVD + +++
Sbjct: 134 GFSGKKITDIVNIGIGGSDLGPKMVVRALQP-----YHCTDLKVHFVSNVDADSLLQALH 188
Query: 73 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG-PSAVAKHMVAVSTNLTLVEKFG 131
++PETTL+++ SK+F+T ET+LN+ + REW+ AVA H VA+S+ L V++FG
Sbjct: 189 VVDPETTLLIIASKSFSTEETLLNSISAREWLLDHYEDEKAVANHFVAISSKLDKVKEFG 248
Query: 132 IDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNI 191
ID + + WDWVGGRYS+ S++G + ++ G+ EK L GA+S+D+HF + KNI
Sbjct: 249 IDLEHCYKMWDWVGGRYSLWSSIG-MSIAFAIGYDNFEKLLAGAYSVDKHFKETEFSKNI 307
Query: 192 PVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAG 251
PV++ LL+ + ++A+LPY + L F ++QQ MESNGK V+I G + ++ G
Sbjct: 308 PVIMALLASYYSCTYNSQSQALLPYDERLCYFVDYLQQADMESNGKSVNIAGETVNYQTG 367
Query: 252 EIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQ 310
+ +G GTNGQH+F+QL+HQG IP DFI + S ++ L++N FAQ
Sbjct: 368 VVLWGGVGTNGQHAFHQLLHQGNIFIPVDFIAIATSHHN------YDNHQQALLANCFAQ 421
Query: 311 PDALAVGKTPEQLQKE--------NVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLA 362
AL G++ + + E A L HK GNRPS ++LL L+ Y++G L+A
Sbjct: 422 SQALMFGQSYDMVYNELLKSGLNETQAKELAAHKVIPGNRPSTTILLDELSPYSLGALIA 481
Query: 363 IYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTR 422
+YEH+I V+G +W INS+DQWGVELGK L + K ++ + + + ST L+ +
Sbjct: 482 LYEHKIFVQGVLWDINSYDQWGVELGKKLGKNILKAMNDD--SSDEYQNLDDSTRQLIAK 539
Query: 423 Y 423
Sbjct: 540 V 540
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi
glycolysis, structural genomics, center for STRU
genomics of infectious diseases; HET: PG4; 1.50A {Vibrio
cholerae} PDB: 3nbu_A
Length = 574
Score = 641 bits (1656), Expect = 0.0
Identities = 199/421 (47%), Positives = 262/421 (62%), Gaps = 27/421 (6%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 72
G TGK + DVV +GIGGS LGP V AL + F++NVD +A+++
Sbjct: 166 GFTGKAITDVVNIGIGGSDLGPYMVTEALVP------YKNHLTVHFVSNVDGTHMAETLK 219
Query: 73 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG-PSAVAKHMVAVSTNLTLVEKFG 131
++PETTL +V SKTFTT ETM NA T R+W A G + VAKH A+STN V +FG
Sbjct: 220 NVDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFG 279
Query: 132 IDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNI 191
ID +N F FWDWVGGRYS+ SA+G L + L G+ + L GA +DQHF++ P+E NI
Sbjct: 280 IDTDNMFEFWDWVGGRYSLWSAIG-LSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNI 338
Query: 192 PVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAG 251
PV+L L+ IW +F G + AILPY Q L +FA + QQ +MESNGK V +G P+ ++ G
Sbjct: 339 PVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTG 398
Query: 252 EIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQ 310
I +GEPGTNGQH+FYQLIHQG ++IPCDFI S V +H +LMSNFFAQ
Sbjct: 399 PIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNL------VGDHHQKLMSNFFAQ 452
Query: 311 PDALAVGKTPEQLQKE--------NVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLA 362
+ALA GK+ + +Q E L+P K F GNRP+ S+L+ + +G L+A
Sbjct: 453 TEALAFGKSAQAVQAELEKAGKSAAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIA 512
Query: 363 IYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTR 422
+YEH+I V+G IW I SFDQWGVELGK LA Q+ +L S + + ST L+
Sbjct: 513 MYEHKIFVQGVIWNIFSFDQWGVELGKQLANQILPELADS----AAVTSHDSSTNGLINA 568
Query: 423 Y 423
+
Sbjct: 569 F 569
>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase
phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella
melitensis BV}
Length = 553
Score = 640 bits (1652), Expect = 0.0
Identities = 186/422 (44%), Positives = 263/422 (62%), Gaps = 25/422 (5%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 72
GATG+ + D+V +GIGGS LGP+ AL + F++N+D +A +++
Sbjct: 144 GATGRKITDIVNIGIGGSDLGPVMATLALAPY------HDEPRAHFVSNIDGAHIADTLS 197
Query: 73 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGI 132
L+P +TL++V SKTFTT ETM NA+T R+W++ LG +AV H AVST L V FGI
Sbjct: 198 PLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVSTALDKVAAFGI 257
Query: 133 DPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIP 192
+ F FWDWVGGRYSV SA+G LP+ + G KFL GA ++D HF AP EKN+P
Sbjct: 258 PEDRVFGFWDWVGGRYSVWSAIG-LPVMIAVGPDNFRKFLAGAHAMDVHFRDAPLEKNLP 316
Query: 193 VLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGE 252
V+LGL+ W+ + G+ +RAI+PY Q L + ++QQ+ MESNGK V++DG P+ G
Sbjct: 317 VMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKSVTLDGKPVSGPTGP 376
Query: 253 IDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQP 311
+ +GEPGTNGQH+F+QL+HQG IP +FI K +P + H+ LM+N AQ
Sbjct: 377 VVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPT-----LDHQHEMLMANCLAQS 431
Query: 312 DALAVGKTPEQLQKE--------NVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAI 363
+AL G+T ++ + + + + PH+ FSGNRPSL+L+ L+ Y +G+L+A+
Sbjct: 432 EALMKGRTLDEARAQLQAKNLPASQVERIAPHRVFSGNRPSLTLIHDMLDPYTLGRLIAL 491
Query: 364 YEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRY 423
YEHR+ VE I+GIN+FDQWGVELGK LAT++ + E G + ST L+
Sbjct: 492 YEHRVFVEAQIFGINAFDQWGVELGKELATELLPVVSGK----EGASGRDASTQGLVAHL 547
Query: 424 LE 425
Sbjct: 548 HA 549
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose;
dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB:
2o2d_A* 1q50_A
Length = 613
Score = 641 bits (1656), Expect = 0.0
Identities = 193/432 (44%), Positives = 264/432 (61%), Gaps = 32/432 (7%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 72
G TGK ++ VV +GIGGS LGP+ AL+ R L F++NVD +A+ +
Sbjct: 191 GHTGKAIRHVVNIGIGGSDLGPVMATEALKPF-----SQRDLSLHFVSNVDGTHIAEVLK 245
Query: 73 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG------PSAVAKHMVAVSTNLTL 126
++ E TL +V SKTFTT ET+ NA + R + L +VAKH VA+STN
Sbjct: 246 SIDIEATLFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQK 305
Query: 127 VEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAP 186
V++FGID N F FWDWVGGRYS+ SA+G LP+ + G+ + L GA ID+HF +AP
Sbjct: 306 VKEFGIDEENMFQFWDWVGGRYSMWSAIG-LPIMISIGYENFVELLTGAHVIDEHFANAP 364
Query: 187 YEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPL 246
E+N+P+LL L+ +W ++F G AILPY Q L + ++QQ+ MESNGK V+ G +
Sbjct: 365 PEQNVPLLLALVGVWYINFFGAVTHAILPYDQYLWRLPAYLQQLDMESNGKYVTRSGKTV 424
Query: 247 PFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMS 305
G I FGE GTNGQH+FYQLIHQG +IPCDFIG ++SQ + +H MS
Sbjct: 425 STLTGPIIFGEAGTNGQHAFYQLIHQGTNLIPCDFIGAIQSQNK------IGDHHKIFMS 478
Query: 306 NFFAQPDALAVGKTPEQLQKENVAP---------HLIPHKTFSGNRPSLSLLLPSLNAYN 356
NFFAQ +AL +GK+P ++++E A L+PHKTF G RPS +LL+ SL
Sbjct: 479 NFFAQTEALMIGKSPSEVRRELEAAGERSAEKINALLPHKTFIGGRPSNTLLIKSLTPRA 538
Query: 357 IGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFST 416
+G ++A+YEH++ V+G IWGI+S+DQWGVELGK LA + QL + + ST
Sbjct: 539 LGAIIAMYEHKVLVQGAIWGIDSYDQWGVELGKVLAKSILPQLRPG----MRVNNHDSST 594
Query: 417 TTLLTRYLEASS 428
L+ + E S
Sbjct: 595 NGLINMFNELSH 606
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
phosphoglucose isomerase, substrate,
D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
mexicana mexicana} SCOP: c.80.1.2
Length = 605
Score = 638 bits (1649), Expect = 0.0
Identities = 194/426 (45%), Positives = 267/426 (62%), Gaps = 31/426 (7%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 72
G TGK + ++V +GIGGS LGP+ V AL+ R F++NVD +A+ +
Sbjct: 190 GQTGKSIYNIVNIGIGGSDLGPVMVTEALKP-----FSKRDLHCFFVSNVDGTHMAEVLK 244
Query: 73 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG------PSAVAKHMVAVSTNLTL 126
+N E T+ ++ SKTFTT ET+ NA + R + + L AVAKH VA+STN
Sbjct: 245 QVNLEETIFIIASKTFTTQETLTNAMSARNALMSYLKENGISTDGAVAKHFVALSTNTEK 304
Query: 127 VEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAP 186
V +FGID N FAFWDWVGGRYSV SA+G L + L G+ +FL GA +D HF S P
Sbjct: 305 VREFGIDTVNMFAFWDWVGGRYSVWSAIG-LSVMLSIGYDNFVEFLTGAHVMDNHFASTP 363
Query: 187 YEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPL 246
E+N+P++L L+ IW +F G +A+LPY Q L + ++QQ+ MESNGKGV+ +
Sbjct: 364 TEQNLPMMLALVGIWYNNFFGSETQAVLPYDQYLWRLPAYLQQLDMESNGKGVTKKSGAV 423
Query: 247 PFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMS 305
+ G I FGE GTNGQH+FYQLIHQG ++IPCDFIG V++Q V +H LMS
Sbjct: 424 AVQTGPIVFGEAGTNGQHAFYQLIHQGTKIIPCDFIGCVQTQNR------VGDHHRTLMS 477
Query: 306 NFFAQPDALAVGKTPEQLQKENVAP--------HLIPHKTFSGNRPSLSLLLPSLNAYNI 357
NFFAQ +AL VGK E++++E V ++IPHKTF+G+RPS S+L+ +L +
Sbjct: 478 NFFAQTEALMVGKNAEEVRQELVKSGMSGDAIENMIPHKTFTGSRPSNSILVNALTPRAL 537
Query: 358 GQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTT 417
G ++A+YEH++ V+G IWGINS+DQWGVELGK LA + QL + + + ST
Sbjct: 538 GAIIAMYEHKVLVQGAIWGINSYDQWGVELGKVLAKSILPQLKSG----NIVSDHDGSTN 593
Query: 418 TLLTRY 423
L+ +
Sbjct: 594 GLINMF 599
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken
structural genomics/PR initiative, RSGI, NPPSFA; 1.95A
{Thermus thermophilus}
Length = 415
Score = 431 bits (1111), Expect = e-150
Identities = 99/388 (25%), Positives = 158/388 (40%), Gaps = 36/388 (9%)
Query: 11 QVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS 70
+ ++D V +GIGGS LGP + A G + +L +V+P + +
Sbjct: 58 RYREANPWVEDFVLIGIGGSALGPKALEAAFNES--------GVRFHYLDHVEPEPILRL 109
Query: 71 ITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKF 130
+ L+P TLV VSK+ +TAET+ +W+ LG +H+V + +
Sbjct: 110 LRTLDPRKTLVNAVSKSGSTAETLAGLAVFLKWLKAHLG-EDWRRHLVVTTDPKEGPLRA 168
Query: 131 GIDPNNA--FAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYE 188
+ FA VGGR+S S VG+LPL+ + + ++ L GA ++ AP E
Sbjct: 169 FAEREGLKAFAIPKEVGGRFSALSPVGLLPLA--FAGADLDALLMGARKANETA-LAPLE 225
Query: 189 KNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPF 248
+++P+ LL + P + YS+ L Q+ ES GK V G +
Sbjct: 226 ESLPLKTALLLHLHR---HLPVHVFMVYSERLSHLPSWFVQLHDESLGK-VDRQGQRVGT 281
Query: 249 EAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNF 307
A G QH+ QL +G + + V +
Sbjct: 282 TAV----PALGPKDQHAQVQLFREGPLDKLLALVIPEAPLEDV---------EIPEVEGL 328
Query: 308 FAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHR 367
+ + GKT QL K + +L LP ++ Y +G L+ +
Sbjct: 329 --EAASYLFGKTLFQLLKA--EAEATYEALAEAGQRVYALFLPEVSPYAVGWLMQHLMWQ 384
Query: 368 IAVEGFIWGINSFDQWGVELGKSLATQV 395
A G +W +N+FDQ GVELGK L +
Sbjct: 385 TAFLGELWEVNAFDQPGVELGKVLTRKR 412
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Length = 460
Score = 427 bits (1101), Expect = e-148
Identities = 97/392 (24%), Positives = 161/392 (41%), Gaps = 28/392 (7%)
Query: 11 QVGATGKVLKDVVAVGIGGSFLGPLFVHTALQ----TDLEAIECARGRQLRFLANVDPID 66
+ VV +GIGGS LG L +H +L+ ++ E ++ + NVDP
Sbjct: 70 SLEDWIINFDTVVVLGIGGSGLGNLALHYSLRPLNWNEMTREERNGYARVFVVDNVDPDL 129
Query: 67 VAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTL 126
++ + ++P+TTL V+SK+ +TAE M R + A G +HM+ +
Sbjct: 130 MSSVLDRIDPKTTLFNVISKSGSTAEVMATYSIARGIL-EAYGLDP-REHMLITTDPEKG 187
Query: 127 VEKFGIDPNN--AFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFIS 184
+ + + VGGR+SV + VG+L + G + ++ +GA + +
Sbjct: 188 FLRKLVKEEGFRSLEVPPGVGGRFSVLTPVGLLSAMAE-GIDI-DELHEGAKDAFEKSMK 245
Query: 185 APYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGV 244
+N ++ L ++ G ++ YS + +Q+ ES GK ++ G
Sbjct: 246 ENILENPAAMIALTHYLYLNK-GKSISVMMAYSNRMIYLVDWYRQLWAESLGKRYNLKGE 304
Query: 245 PLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDEL 303
+ G+ G QHS QL ++G F+ V + +
Sbjct: 305 EVFT--GQTPVKALGATDQHSQIQLYNEGPNDKVITFLRVENFDR-----------EIVI 351
Query: 304 MSNFFAQPDALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAI 363
A+ LA K E L E NRP++ + L YN+GQ A
Sbjct: 352 PETGRAELSYLARKKLSELLLAEQTG---TEEALRENNRPNMRVTFDGLTPYNVGQFFAY 408
Query: 364 YEHRIAVEGFIWGINSFDQWGVELGKSLATQV 395
YE A G++ IN FDQ GVELGK + +
Sbjct: 409 YEAATAFMGYLLEINPFDQPGVELGKKITFAL 440
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin,
crystallography motility; 2.30A {Geobacillus
stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A*
2pgi_A
Length = 445
Score = 374 bits (963), Expect = e-127
Identities = 97/412 (23%), Positives = 165/412 (40%), Gaps = 45/412 (10%)
Query: 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETT 79
+V +GIGGS+LG AL + N+ ++ + L +
Sbjct: 73 DALVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGKDL 132
Query: 80 LVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN-----LTLVEKFGIDP 134
+ V+SK+ TT E + R R+++ G K + + L ++ G +
Sbjct: 133 SINVISKSGTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYE- 191
Query: 135 NNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVL 194
F D +GGRYSV +AVG+LP+++ G + +++ ++GA S + + N
Sbjct: 192 --TFVIPDNIGGRYSVLTAVGLLPIAVA-GLN-IDRMMEGAASAYHKYNNPDLLTNESYQ 247
Query: 195 LGLLSIWNVSFL-GHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEI 253
+ N+ + G ++ Y +L + +Q+ ES GK D G
Sbjct: 248 YAA--VRNILYRKGKAIELLVNYEPSLHYVSEWWKQLFGESEGK----DQK------GLF 295
Query: 254 DFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDA 313
T HS Q + +GR + + VK Q E N D L NF A
Sbjct: 296 PASVDFTTDLHSMGQYVQEGRRNLIETVLHVKKPQIELTIQEDPENIDGL--NFLA---- 349
Query: 314 LAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGF 373
GKT +++ K+ L+ H G P+L + L +N Y G+++ +E + G
Sbjct: 350 ---GKTLDEVNKKAFQGTLLAHV--DGGVPNLIVELDEMNEYTFGEMVYFFEKACGISGH 404
Query: 374 IWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYLE 425
+ G+N FDQ GVE K + + + GF L+ R +
Sbjct: 405 LLGVNPFDQPGVEAYKKNMFAL--------LGK---PGFEDEKAALMKRLSK 445
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold,
gluconeogenesis, glycolysis, structural genomics; HET:
G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Length = 446
Score = 336 bits (863), Expect = e-112
Identities = 94/380 (24%), Positives = 154/380 (40%), Gaps = 37/380 (9%)
Query: 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLAN-VDPIDVAKSITGLNPET 78
+V +GIGGS+LG L + ++ F+ N + + + L +
Sbjct: 77 DVLVVIGIGGSYLGARAAIEMLTSSFR--NSNEYPEIVFVGNHLSSTYTKELVDYLADKD 134
Query: 79 TLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN-----LTLVEKFGID 133
V V+SK+ TT E + R ++ + G K + A + L G +
Sbjct: 135 FSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYE 194
Query: 134 PNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPV 193
F D VGGRYSV +AVG+LP++ G ++ E + GA + S E+NI
Sbjct: 195 ---TFIVPDDVGGRYSVLTAVGLLPIATA-GINI-EAMMIGAAKAREELSSDKLEENIAY 249
Query: 194 LLGLLSIWNVSFL-GHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGE 252
I N+ + G+ ++ Y +++ F +Q+ ES GK G
Sbjct: 250 QYAT--IRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFK----------GI 297
Query: 253 IDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPD 312
T HS Q + +GR F VVK P Y + D N+ A
Sbjct: 298 YPSSANYTTDLHSLGQYVQEGRRFL--FETVVKVNHPKYDITIEKDSDDLDGLNYLA--- 352
Query: 313 ALAVGKTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEG 372
GKT +++ + L+ H G P++ + +P L+ G ++ +E A+ G
Sbjct: 353 ----GKTIDEVNTKAFEGTLLAHT--DGGVPNMVVNIPQLDEETFGYVVYFFELACAMSG 406
Query: 373 FIWGINSFDQWGVELGKSLA 392
+ G+N F+Q GVE K
Sbjct: 407 YQLGVNPFNQPGVEAYKQNM 426
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 4e-08
Identities = 54/312 (17%), Positives = 108/312 (34%), Gaps = 87/312 (27%)
Query: 161 LQYGFSVVEKFLKGAWSIDQHFISAPY--EKNIPVLLGLLSIWNVSFLGHPARAILPYS- 217
L +V+KF++ I+ F+ +P E+ P ++ + I L + + Y+
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 218 ---QALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGR 274
Q K + ++ K V IDGV G G
Sbjct: 132 SRLQPYLKLRQALLEL---RPAKNVLIDGV-----LG---SG------------------ 162
Query: 275 VIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDA---LAVGK--TPEQL--QKEN 327
K+ ++ +V ++ ++ L + +PE + +
Sbjct: 163 ----------KT----WVALDVCLSY-KVQCKM---DFKIFWLNLKNCNSPETVLEMLQK 204
Query: 328 VAPHLIPHKTFSGNRP-SLSLLLPSLNAYNIGQLLAIYEHRIAVEGFI-------WGINS 379
+ + P+ T + ++ L + S+ A + +LL + + + N+
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCL--LVLLNVQNAKAWNA 261
Query: 380 FDQWGVELG-KSLAT----QVRKQLHASRMKREPIEGFNFSTT-----TLLTRYLEAS-S 428
F+ L K L T QV L A+ ++ + + T +LL +YL+
Sbjct: 262 FN-----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 429 DIPSDPSTLLPR 440
D+P + T PR
Sbjct: 317 DLPREVLTTNPR 328
Score = 41.4 bits (96), Expect = 6e-04
Identities = 53/346 (15%), Positives = 102/346 (29%), Gaps = 98/346 (28%)
Query: 69 KSIT-GLNPETTLVVVV---SKTFTTAETMLNARTLREWISTA---LGPSAVAKHMVAVS 121
K +T L+ TT + + S T T E L +++ L + + +S
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 122 TNLTLVEKFGIDPNNAFAFWD-WVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSID- 179
+ E WD W ++ C + +++E L +
Sbjct: 332 ---IIAESIRDGLAT----WDNW---KHVNCDKLT----------TIIESSLNVLEPAEY 371
Query: 180 -QHFIS-APYEKNIPVLLGLLSI-WNVSFLGHPARAILPYSQALEKFAPHIQQVSM-ESN 235
+ F + + + + LLS+ W + + + S+ E
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDV-----------IKSDVMVVVNKLHKYSLVEKQ 420
Query: 236 GKG--VSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLK 293
K +SI + L + N Y L H+ ++ Y
Sbjct: 421 PKESTISIPSIYL-------ELKVKLEN----EYAL-HR-SIVDH------------YNI 455
Query: 294 GEVVSNHDEL---MSNFFAQPDALAVG---KTPEQLQKENVAPHL----------IPHKT 337
+ + D + + +F +G K E ++ + + I H +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYS----HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 338 FSGNRPSLSL-LLPSLNAYN--IGQLLAIYEHRI-AVEGFIWGINS 379
+ N L L L Y I YE + A+ F+ I
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 61/317 (19%), Positives = 93/317 (29%), Gaps = 110/317 (34%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIEC-----ARGRQLRFLANVDPIDV 67
GATG V AV I + F + + AI R + ++ P +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRK----AITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 68 AKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLV 127
S+ N E ML+ L V ++ +++L
Sbjct: 325 EDSLE--NNE-----------GVPSPMLSISNLT--------QEQVQDYVNKTNSHLPAG 363
Query: 128 EKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSV-VEKFLKGAWSIDQHFISAP 186
++ I N G + V S G P SL YG ++ + K K +DQ I P
Sbjct: 364 KQVEISLVN--------GAKNLVVS--G-PPQSL-YGLNLTLRK-AKAPSGLDQSRI--P 408
Query: 187 YEKNIPVLLGLLSIWNVSFLGHPARAILPY-SQALEKFAPHIQQVSMESNGKGVSIDGVP 245
+ + + FL P + P+ S L + I + + VS +
Sbjct: 409 FSERKLKF-------SNRFL--PVAS--PFHSHLLVPASDLINK---DLVKNNVSFNAKD 454
Query: 246 L--P---FEAGE-----------------------------------IDFGEPGTNGQHS 265
+ P G +DFG PG G
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PG--GASG 511
Query: 266 FYQLIH---QG---RVI 276
L H G RVI
Sbjct: 512 LGVLTHRNKDGTGVRVI 528
Score = 48.1 bits (114), Expect = 5e-06
Identities = 45/213 (21%), Positives = 76/213 (35%), Gaps = 70/213 (32%)
Query: 51 ARGRQLR-------FLANVDPIDVAKSI-TGLNPETTLVVVVSKTFTTAETMLNARTLRE 102
+G+++R F VD + I +N +T S TF + + +L+ T
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST-----SYTFRSEKGLLS-AT--- 1729
Query: 103 WIST--ALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVG---GRYS--VCSAVG 155
T AL + + K L K I + FA G G Y+ A
Sbjct: 1730 -QFTQPAL--TLMEKAAFED-----LKSKGLIPADATFA-----GHSLGEYAALASLA-D 1775
Query: 156 VLPLSLQYGFSVVE------KFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHP 209
V+ + S+VE ++ A D+ S G+++I +P
Sbjct: 1776 VMSIE-----SLVEVVFYRGMTMQVAVPRDELGRSNY---------GMIAI-------NP 1814
Query: 210 ARAILPYSQ-ALEKFAPHIQQVSMESNGKGVSI 241
R +SQ AL+ +++V + G V I
Sbjct: 1815 GRVAASFSQEALQYV---VERVGKRT-GWLVEI 1843
Score = 48.1 bits (114), Expect = 5e-06
Identities = 52/321 (16%), Positives = 91/321 (28%), Gaps = 131/321 (40%)
Query: 152 SAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPAR 211
A PL+L +G S+ E + V P
Sbjct: 2 DAYSTRPLTLSHG------------SL---------EHVLLV---------------PTA 25
Query: 212 AILPYSQALEKFAPHIQQVSMESNGKGVSIDGVP----------LPFEAGEIDFGEPGTN 261
+ SQ E+F + + + +G + D P L + + ++ + G
Sbjct: 26 SFFIASQLQEQFNKILPEPT-----EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG-- 78
Query: 262 GQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPE 321
F Q++ + +F + YL+G + H ALA E
Sbjct: 79 ---QFDQVL---NLCLTEF-------ENCYLEGNDI--H------------ALAAKLLQE 111
Query: 322 QLQKENVAPHLIPHKTF-----SGNRP----SLSLLLPSLNA-----YNI--GQ------ 359
LI K + RP S S L ++ I GQ
Sbjct: 112 NDTTLVKTKELI--KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 360 ---LLAIYEH-RIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPI--EGFN 413
L +Y+ + V I + + +L + + E + +G N
Sbjct: 170 FEELRDLYQTYHVLVGDLI---------------KFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 414 FSTTTLLTRYLEASSDIPSDP 434
+ +LE S+ P
Sbjct: 215 ------ILEWLENPSNTPDKD 229
Score = 35.0 bits (80), Expect = 0.052
Identities = 57/293 (19%), Positives = 90/293 (30%), Gaps = 102/293 (34%)
Query: 159 LSLQYGFSVVEKFLKGAWSIDQHF-------ISAPYEKNI------------PVLLGL-L 198
YGFS+++ + ++ HF I Y I + +
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 199 SIWNVSFLGHPA----------RAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLP- 247
+ +F A+ +A F ++S G +P
Sbjct: 1713 HSTSYTF-RSEKGLLSATQFTQPALTLMEKAA--FE------DLKSKG------LIPADA 1757
Query: 248 -FEAGEIDFGEPGTNGQHSF--YQ-LIHQGRVIPCDFIGVVKSQQPVYLKGEVVSN---H 300
F AG HS Y L V+ +V+ V+ +G +
Sbjct: 1758 TF-AG------------HSLGEYAALASLADVMS--IESLVEV---VFYRGMTMQVAVPR 1799
Query: 301 DEL-MSNF--FA-QPDALAVGKTPEQLQK--ENVAPHLIPHKTFSGNRPSLSLLLPSLNA 354
DEL SN+ A P +A + E LQ E V +G L+ N
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR-------TG-----WLVEIV-N- 1845
Query: 355 YNI-GQLLAIYEHRIAVE------GFIWGINSFDQWGVELGKSLATQ-VRKQL 399
YN+ Q A++ FI + D +EL KSL+ + V L
Sbjct: 1846 YNVENQQYVAAGDLRALDTVTNVLNFI-KLQKIDI--IELQKSLSLEEVEGHL 1895
Score = 31.2 bits (70), Expect = 0.84
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 42/99 (42%)
Query: 342 RPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHA 401
RP L+L SL EH + V + +A+Q+++Q +
Sbjct: 7 RP-LTLSHGSL------------EHVLLV--------PTASF------FIASQLQEQFNK 39
Query: 402 SRMKREPIEGFNFSTTTLLTRYLEASSDIPSDPSTLLPR 440
EP EGF A+ D P+ P+ L+ +
Sbjct: 40 IL--PEPTEGF-------------AADDEPTTPAELVGK 63
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon,
hyperthermophIle, PGI family; 1.16A {Pyrobaculum
aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Length = 302
Score = 33.8 bits (76), Expect = 0.082
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 16/83 (19%)
Query: 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETT 79
+ G+GGS + + T + + K L
Sbjct: 38 PRLYISGMGGSGVVADLIRDFSLTWNWEV---------------EVIAVKD-YFLKARDG 81
Query: 80 LVVVVSKTFTTAETMLNARTLRE 102
L++ VS + T ET+ +
Sbjct: 82 LLIAVSYSGNTIETLYTVEYAKR 104
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.4
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 17/42 (40%)
Query: 285 KSQQPVYLKGEVVSNHDELMSNF--FAQPD---ALAVGKTPE 321
+ Q LK +L ++ +A D ALA+ T E
Sbjct: 18 EKQA---LK--------KLQASLKLYA-DDSAPALAIKATME 47
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 28.4 bits (63), Expect = 4.5
Identities = 12/127 (9%), Positives = 31/127 (24%), Gaps = 19/127 (14%)
Query: 20 KDVVAVGIGGSFLGPLFV---HTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 76
+ A G + ++V + + +T A A + +
Sbjct: 68 VALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAAIMGSVRRKG------- 120
Query: 77 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAK---------HMVAVSTNLTLV 127
++ + + E G ++ K + LT
Sbjct: 121 ADIRIIASGRDAEEFMKLNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAA 180
Query: 128 EKFGIDP 134
+ G++
Sbjct: 181 HRLGLEE 187
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Length = 315
Score = 28.3 bits (64), Expect = 5.3
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 8/25 (32%)
Query: 10 WQVGATGKVLKDV-----VAVGIGG 29
QVG TGK+ V +AVGI G
Sbjct: 243 MQVGQTGKI---VAPELYIAVGISG 264
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport,
glutaric acidemia type II; HET: FAD AMP; 2.60A
{Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Length = 307
Score = 27.9 bits (63), Expect = 6.1
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 8/25 (32%)
Query: 10 WQVGATGKVLKDV-----VAVGIGG 29
WQVG TGKV V VAVGI G
Sbjct: 238 WQVGQTGKV---VAPELYVAVGISG 259
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway,
EPSP synthase, structural genomics; HET: S3P; 1.15A
{Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A*
2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Length = 450
Score = 27.6 bits (62), Expect = 8.5
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 230 VSMESNGKGVSIDGVPLPFEAGEIDFGEPGT 260
+ ++ G +++ G P +D G GT
Sbjct: 67 LRVDGVGSELTVSGRIEPGPGARVDCGLAGT 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.413
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,827,900
Number of extensions: 416759
Number of successful extensions: 910
Number of sequences better than 10.0: 1
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 32
Length of query: 441
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 345
Effective length of database: 4,021,377
Effective search space: 1387375065
Effective search space used: 1387375065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)