RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013562
(441 letters)
>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania
mexicana [TaxId: 5665]}
Length = 561
Score = 308 bits (789), Expect = e-100
Identities = 193/424 (45%), Positives = 266/424 (62%), Gaps = 31/424 (7%)
Query: 15 TGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGL 74
TGK + ++V +GIGGS LGP+ V AL+ R F++NVD +A+ + +
Sbjct: 149 TGKSIYNIVNIGIGGSDLGPVMVTEALKPF-----SKRDLHCFFVSNVDGTHMAEVLKQV 203
Query: 75 NPETTLVVVVSKTFTTAETMLNARTLREWISTALG------PSAVAKHMVAVSTNLTLVE 128
N E T+ ++ SKTFTT ET+ NA + R + + L AVAKH VA+STN V
Sbjct: 204 NLEETIFIIASKTFTTQETLTNAMSARNALMSYLKENGISTDGAVAKHFVALSTNTEKVR 263
Query: 129 KFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYE 188
+FGID N FAFWDWVGGRYSV SA+G L + L G+ +FL GA +D HF S P E
Sbjct: 264 EFGIDTVNMFAFWDWVGGRYSVWSAIG-LSVMLSIGYDNFVEFLTGAHVMDNHFASTPTE 322
Query: 189 KNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPF 248
+N+P++L L+ IW +F G +A+LPY Q L + ++QQ+ MESNGKGV+ +
Sbjct: 323 QNLPMMLALVGIWYNNFFGSETQAVLPYDQYLWRLPAYLQQLDMESNGKGVTKKSGAVAV 382
Query: 249 EAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNF 307
+ G I FGE GTNGQH+FYQLIHQG ++IPCDFIG V++Q V +H LMSNF
Sbjct: 383 QTGPIVFGEAGTNGQHAFYQLIHQGTKIIPCDFIGCVQTQNRV------GDHHRTLMSNF 436
Query: 308 FAQPDALAVGKTPEQLQKENVA--------PHLIPHKTFSGNRPSLSLLLPSLNAYNIGQ 359
FAQ +AL VGK E++++E V ++IPHKTF+G+RPS S+L+ +L +G
Sbjct: 437 FAQTEALMVGKNAEEVRQELVKSGMSGDAIENMIPHKTFTGSRPSNSILVNALTPRALGA 496
Query: 360 LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTL 419
++A+YEH++ V+G IWGINS+DQWGVELGK LA + QL + + + ST L
Sbjct: 497 IIAMYEHKVLVQGAIWGINSYDQWGVELGKVLAKSILPQLKSG----NIVSDHDGSTNGL 552
Query: 420 LTRY 423
+ +
Sbjct: 553 INMF 556
>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 556
Score = 296 bits (757), Expect = 2e-95
Identities = 198/423 (46%), Positives = 268/423 (63%), Gaps = 24/423 (5%)
Query: 13 GATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 72
G TGK + DV+ +GIGGS LGPL V AL+ + G ++ +++N+D +AK++
Sbjct: 142 GYTGKTITDVINIGIGGSDLGPLMVTEALKP-----YSSGGPRVWYVSNIDGTHIAKTLA 196
Query: 73 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG-PSAVAKHMVAVSTNLTLVEKFG 131
LNPE++L ++ SKTFTT ET+ NA T +EW A PSAVAKH VA+STN T V++FG
Sbjct: 197 QLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTKVKEFG 256
Query: 132 IDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNI 191
IDP N F FWDWVGGRYS+ SA+G+ L GF E+ L GA +DQHF + P EKN
Sbjct: 257 IDPQNMFEFWDWVGGRYSLWSAIGLSIA-LHVGFDNFEQLLSGAHWMDQHFRTTPLEKNA 315
Query: 192 PVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAG 251
PVLL LL IW ++ G A+LPY Q L +FA + QQ MESNGK ++ G + + G
Sbjct: 316 PVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTG 375
Query: 252 EIDFGEPGTNGQHSFYQLIH-QGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQ 310
I +GEPGTNGQH+FYQLIH ++IPCDF+ V++Q P+ +H L++NF AQ
Sbjct: 376 PIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPI----RKGLHHKILLANFLAQ 431
Query: 311 PDALAVGKTPEQLQKENVA--------PHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLA 362
+AL GK+ E+ +KE A L+PHK F GNRP+ S++ L + +G L+A
Sbjct: 432 TEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVA 491
Query: 363 IYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTR 422
+YEH+I V+G IW INSFDQWGVELGK LA ++ +L S + + ST L+
Sbjct: 492 MYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGS----AQVTSHDASTNGLINF 547
Query: 423 YLE 425
+
Sbjct: 548 IKQ 550
>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 442
Score = 214 bits (546), Expect = 1e-65
Identities = 86/405 (21%), Positives = 145/405 (35%), Gaps = 37/405 (9%)
Query: 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETT 79
+V +GIGGS+LG AL + N+ ++ + L +
Sbjct: 72 DALVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGKDL 131
Query: 80 LVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNA-- 137
+ V+SK+ TT E + R R+++ G K + + K D
Sbjct: 132 SINVISKSGTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYET 191
Query: 138 FAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGL 197
F D +GGRYSV +AVG+LP+ +++ ++GA S + + N
Sbjct: 192 FVIPDNIGGRYSVLTAVGLLPI--AVAGLNIDRMMEGAASAYHKYNNPDLLTNESYQYAA 249
Query: 198 LSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGE 257
+ + G ++ Y +L + +Q+ ES GK
Sbjct: 250 V-RNILYRKGKAIELLVNYEPSLHYVSEWWKQLFGESEGKDQKGL----------FPASV 298
Query: 258 PGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVG 317
T HS Q + +GR + + VK Q G
Sbjct: 299 DFTTDLHSMGQYVQEGRRNLIETVLHVKKPQ---------IELTIQEDPENIDGLNFLAG 349
Query: 318 KTPEQLQKENVAPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQLLAIYEHRIAVEGFIWGI 377
KT +++ K+ L+ H G P+L + L +N Y G+++ +E + G + G+
Sbjct: 350 KTLDEVNKKAFQGTLLAH--VDGGVPNLIVELDEMNEYTFGEMVYFFEKACGISGHLLGV 407
Query: 378 NSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTR 422
N FDQ GVE K + + GF L+ R
Sbjct: 408 NPFDQPGVEAYKKNMFALLGK-----------PGFEDEKAALMKR 441
>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 132
Score = 30.1 bits (67), Expect = 0.22
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 113 VAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVC 151
+A ++ A L + K G+ A + GR +
Sbjct: 15 LAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNAT 53
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 27.3 bits (60), Expect = 0.87
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 391 LATQVRKQLHASRMKR------EPIEGFNFSTTTLLTRYLEASSDI 430
LA + +++HA MKR P F+FS LL+R E ++
Sbjct: 6 LAEKFLREMHAKYMKRVSRPGNTPRPWFDFSEERLLSRLFEEMDEL 51
>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 248
Score = 27.0 bits (58), Expect = 4.1
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 2/119 (1%)
Query: 129 KFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYE 188
K N + ++ S +G + + G + + Y
Sbjct: 131 KKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYP 190
Query: 189 KNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLP 247
+ I + G A +P + + I ++ + NG V+ DG PL
Sbjct: 191 QRIMCVSLHPGWVKTDMGGSSAPLDVP--TSTGQIVQTISKLGEKQNGGFVNYDGTPLA 247
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 300
Score = 27.2 bits (59), Expect = 4.2
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 16/84 (19%)
Query: 20 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETT 79
+ G+GGS + + T N + +A L
Sbjct: 37 PRLYISGMGGSGVVADLIRDFSLTW----------------NWEVEVIAVKDYFLKARDG 80
Query: 80 LVVVVSKTFTTAETMLNARTLREW 103
L++ VS + T ET+ +
Sbjct: 81 LLIAVSYSGNTIETLYTVEYAKRR 104
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 25.8 bits (56), Expect = 8.6
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 22 VVAVGIGGSFLGPLFVHTALQTDLEAIECAR 52
A+G GG + TDL A E
Sbjct: 119 AAAIGSGGPYALAAAKALLRNTDLSAREIVE 149
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 26.3 bits (58), Expect = 9.3
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 209 PARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGE 257
P +P + I Q++ME+ G ++ + LP G GE
Sbjct: 283 PEDKQIPDWFFSVEDYDKIVQIAMETRGIKLTKIKLDLPINFGPAFEGE 331
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 189
Score = 25.7 bits (56), Expect = 9.8
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 19 LKDVVAVGIGGSFLGPLFVHTALQTD--LEAIE-CARGRQLRFLANVDPIDVAKSITGLN 75
V +G + G LF + + TD ++ I + L AN+ ID A+ L
Sbjct: 74 TDSVALIGHRIAHGGELFTQSVIITDEIIDNIRRVSPLAPLHNYANLSGIDAARH---LF 130
Query: 76 PETTLVVVVSKTFTTAETMLNAR 98
P V V +F
Sbjct: 131 PAVRQVAVFDTSFHQTLAPEAYL 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.413
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,642,454
Number of extensions: 75376
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 10
Length of query: 441
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,199,356
Effective search space: 423372668
Effective search space used: 423372668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)