Query 013565
Match_columns 440
No_of_seqs 162 out of 445
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 12:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 9.4E-31 3.2E-35 227.1 15.3 118 128-247 6-124 (130)
2 4i1k_A B3 domain-containing tr 99.8 1.3E-19 4.5E-24 160.7 12.7 103 129-242 42-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.7 1.4E-16 4.9E-21 132.2 10.9 96 132-241 7-102 (104)
4 1na6_A Ecorii, restriction end 95.1 0.063 2.1E-06 55.1 9.0 94 130-224 15-123 (404)
5 1gcc_A Ethylene responsive ele 92.5 0.013 4.5E-07 45.4 -1.3 40 54-96 6-49 (63)
6 1pqh_A Aspartate 1-decarboxyla 68.2 54 0.0018 29.5 11.0 79 131-222 23-105 (143)
7 2k75_A Uncharacterized protein 66.9 10 0.00035 31.3 5.7 50 173-242 40-89 (106)
8 3oug_A Aspartate 1-decarboxyla 64.1 62 0.0021 28.2 10.2 78 132-222 10-91 (114)
9 2c45_A Aspartate 1-decarboxyla 56.5 63 0.0022 29.0 9.2 79 132-223 7-89 (139)
10 3o27_A Putative uncharacterize 51.3 11 0.00038 30.2 3.1 41 196-240 23-63 (68)
11 3e0e_A Replication protein A; 48.6 42 0.0014 27.0 6.3 35 173-224 40-74 (97)
12 2kbn_A Conserved protein; nucl 31.3 79 0.0027 25.9 5.5 54 172-241 36-89 (109)
13 2k50_A Replication factor A re 30.7 89 0.003 25.2 5.6 40 172-225 44-83 (115)
14 1o7i_A SSB, SSO2364, single st 30.7 76 0.0026 26.1 5.3 53 172-241 39-91 (119)
15 1oa8_A Ataxin-1; RNA binding, 30.4 56 0.0019 29.0 4.6 29 195-223 88-126 (133)
16 2cbp_A Cucumber basic protein; 27.8 25 0.00084 28.8 1.7 18 207-224 18-35 (96)
17 3dm3_A Replication factor A; p 27.5 1.8E+02 0.0062 23.8 7.0 35 173-224 43-77 (105)
18 3m7a_A Uncharacterized protein 25.6 74 0.0025 28.0 4.5 47 172-221 83-140 (140)
19 1mvf_D MAZE protein, PEMI-like 25.5 44 0.0015 26.0 2.7 39 190-236 7-45 (82)
20 1x9u_A Umecyanin; cupredoxin, 24.7 25 0.00084 29.9 1.2 19 206-224 23-41 (116)
21 1wjj_A Hypothetical protein F2 24.3 87 0.003 27.7 4.7 56 172-244 63-118 (145)
22 2vb2_X Copper protein, cation 23.2 73 0.0025 25.7 3.7 16 210-225 59-74 (88)
23 3pjy_A Hypothetical signal pep 22.4 1.8E+02 0.0062 25.2 6.3 48 173-223 70-128 (136)
24 2qcp_X Cation efflux system pr 22.1 81 0.0028 25.0 3.7 16 210-225 51-66 (80)
25 4dok_A Similarity to chalcone- 22.0 71 0.0024 29.6 3.9 36 204-242 129-164 (208)
26 2p5d_A UPF0310 protein mjecl36 21.8 94 0.0032 27.1 4.4 39 202-242 29-69 (147)
27 1eik_A RNA polymerase subunit 20.6 97 0.0033 25.1 3.9 31 205-238 43-73 (77)
28 1f56_A Plantacyanin; cupredoxi 20.5 40 0.0014 27.3 1.6 19 206-224 12-30 (91)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.97 E-value=9.4e-31 Score=227.13 Aligned_cols=118 Identities=66% Similarity=1.066 Sum_probs=104.5
Q ss_pred cccccceeEEEecccCCCCCCCcEEeehhchhhhCCC-CCCCCCCCeEEEEEeCCCCeEEEEEEEeCCCcceEEecChhh
Q 013565 128 ISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL-DSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSR 206 (440)
Q Consensus 128 ~~~eke~lF~KvLT~SDV~k~gRLvIPKr~AEk~FPL-d~s~~~~g~~L~veD~~GK~W~FRysywn~SrrYVLTkGWs~ 206 (440)
....++++|+|+||+|||+++++|+||+++|++|||. +.....+++.|.++|.+|++|+|+|+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 3567788999999999999899999999999999994 333356789999999999999999999998899999999999
Q ss_pred hhhccCCCCCCEEEEEeccccCCCCeEEEEEEeCCCCCccc
Q 013565 207 FVKDKKLDAGDVVSFHRGVGDLAKGRLFIDWRRRSHPPAAA 247 (440)
Q Consensus 207 FVKdKkLkaGDvVvF~R~~~e~~~grLfIgIRRa~~~~~~~ 247 (440)
||++|+|++||+|+|++.+ ..+++|+|++||+......+
T Consensus 86 FV~~~~L~~GD~~~F~~~~--~~~~~l~I~~rr~~~~~~~~ 124 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSN--GQDQQLYIGWKSRSGSDLDA 124 (130)
T ss_dssp HHHHTTCCTTCEEEEEECC--SSSCCEEEEEECCCSCSSCC
T ss_pred HHHHcCCCCCCEEEEEEec--CCCcEEEEEEEECCCCCccc
Confidence 9999999999999999984 46789999999999766444
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.81 E-value=1.3e-19 Score=160.66 Aligned_cols=103 Identities=22% Similarity=0.278 Sum_probs=89.5
Q ss_pred ccccceeEEEecccCCCCCCCcEEeehhchhhhCCCCCCCCCCCeEEEEEeCCCCeEEEEEEEeCCCcceEEecChhhhh
Q 013565 129 SLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFV 208 (440)
Q Consensus 129 ~~eke~lF~KvLT~SDV~k~gRLvIPKr~AEk~FPLd~s~~~~g~~L~veD~~GK~W~FRysywn~SrrYVLTkGWs~FV 208 (440)
....+++|.|+|++|||.+.++|.||+++++++||.. ...|.++|. |+.|+|+|+|++. ++.|++||..||
T Consensus 42 ~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~------~~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv 112 (146)
T 4i1k_A 42 FEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI------SGFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFT 112 (146)
T ss_dssp CCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC------CSEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHH
T ss_pred cCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC------CeEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHH
Confidence 4578899999999999998889999999999999853 357788888 6999999999863 799999999999
Q ss_pred hccCCCCCCEEEEEeccccCCCCeEEEEEEeCCC
Q 013565 209 KDKKLDAGDVVSFHRGVGDLAKGRLFIDWRRRSH 242 (440)
Q Consensus 209 KdKkLkaGDvVvF~R~~~e~~~grLfIgIRRa~~ 242 (440)
++|+|++||+|+|.... ..+-.|.|.|.|+.+
T Consensus 113 ~dn~L~~GD~cvFeli~--~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 113 LENNLGEGDVCVFELLR--TRDFVLKVTAFRVNE 144 (146)
T ss_dssp HHTTCCTTCEEEEEECS--SSSCEEEEEEECCC-
T ss_pred HHcCCCCCCEEEEEEec--CCceEEEEEEEeccC
Confidence 99999999999999974 334579999999875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.68 E-value=1.4e-16 Score=132.22 Aligned_cols=96 Identities=22% Similarity=0.371 Sum_probs=81.4
Q ss_pred cceeEEEecccCCCCCCCcEEeehhchhhhCCCCCCCCCCCeEEEEEeCCCCeEEEEEEEeCCCcceEEecChhhhhhcc
Q 013565 132 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDK 211 (440)
Q Consensus 132 ke~lF~KvLT~SDV~k~gRLvIPKr~AEk~FPLd~s~~~~g~~L~veD~~GK~W~FRysywn~SrrYVLTkGWs~FVKdK 211 (440)
..+.|.|+|+++|. ..+|.||+++++.+.+.. ...+.++|.+|+.|++++++++ .+++|++||.+||++|
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCC------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccC------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 45789999999994 459999999998775532 3478899999999999999874 5789999999999999
Q ss_pred CCCCCCEEEEEeccccCCCCeEEEEEEeCC
Q 013565 212 KLDAGDVVSFHRGVGDLAKGRLFIDWRRRS 241 (440)
Q Consensus 212 kLkaGDvVvF~R~~~e~~~grLfIgIRRa~ 241 (440)
+|++||+|+|... .+.++.|.|-|+.
T Consensus 77 ~L~~GD~lvF~~~----~~~~f~V~If~~s 102 (104)
T 1yel_A 77 NLEDGKYLQFIYD----RDRTFYVIIYGHN 102 (104)
T ss_dssp TCCTTCEEEEEEC----SSSEEEEEEECSS
T ss_pred CCCCCCEEEEEEc----CCCeEEEEEECCC
Confidence 9999999999986 4567888888753
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.13 E-value=0.063 Score=55.13 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=67.4
Q ss_pred cccceeEEEecccCCCCC----CCcEEeehhchhhhCC-CCC-CCCCCCeEEEEE--eCCCCeEEEEEEEeC------CC
Q 013565 130 LEKEHMFDKVVTPSDVGK----LNRLVIPKQHAEKYFP-LDS-SSNEKGLLLNFE--DRNGKPWRFRYSYWN------SS 195 (440)
Q Consensus 130 ~eke~lF~KvLT~SDV~k----~gRLvIPKr~AEk~FP-Ld~-s~~~~g~~L~ve--D~~GK~W~FRysywn------~S 195 (440)
......|.|.|++.|++. ...+.+|+..++.+|| +.. .+.++...+.++ |...-++.++++|.+ ++
T Consensus 15 ~~~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tR 94 (404)
T 1na6_A 15 CENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTR 94 (404)
T ss_dssp HSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCC
T ss_pred cccchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCC
Confidence 445679999999999993 4589999987899997 442 233444555443 443455599999996 34
Q ss_pred cceEEecChh-hhhhccCCCCCCEEEEEec
Q 013565 196 QSYVMTKGWS-RFVKDKKLDAGDVVSFHRG 224 (440)
Q Consensus 196 rrYVLTkGWs-~FVKdKkLkaGDvVvF~R~ 224 (440)
..|.|+. |. .+.--+...+||.++|-+.
T Consensus 95 nEyRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 95 NEKRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp CEEEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred CceEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 6799986 54 3455577889999999876
No 5
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=92.53 E-value=0.013 Score=45.36 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=31.1
Q ss_pred eeccccccccccccccc----ccccceeeccCCcccccccccccccc
Q 013565 54 LLPLTTHHQNYNKQQQP----QMGSWLLGKTTTTTTAAELEDVSNEE 96 (440)
Q Consensus 54 ~~p~~~~~~~~~~q~~~----h~~~w~~~~~~~~~~Aa~~~~v~~~~ 96 (440)
|--.+.| +|.++|.. ..+.|||+++.++ +||+|||+++..
T Consensus 6 V~~r~~g--kw~A~I~~~~~~g~r~~LGtf~T~e-eAA~AyD~Aa~~ 49 (63)
T 1gcc_A 6 VRQRPWG--KFAAEIRDPAKNGARVWLGTFETAE-DAALAYDRAAFR 49 (63)
T ss_dssp EEEETTT--EEEEEEEETTTTSEEEEEEEESSHH-HHHHHHHHHHHH
T ss_pred EeeCCCC--cEEEEEccccCCCeEEEeeeCCCHH-HHHHHHHHHHHH
Confidence 4433455 99999975 2588999999998 899999976654
No 6
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=68.23 E-value=54 Score=29.52 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=55.9
Q ss_pred ccceeEEEecccCCCCCCCcEEeehhchhh--hCCCCCCCCCCCeEEEEEeC-CCCeEEEEEEEeCC-CcceEEecChhh
Q 013565 131 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEK--YFPLDSSSNEKGLLLNFEDR-NGKPWRFRYSYWNS-SQSYVMTKGWSR 206 (440)
Q Consensus 131 eke~lF~KvLT~SDV~k~gRLvIPKr~AEk--~FPLd~s~~~~g~~L~veD~-~GK~W~FRysywn~-SrrYVLTkGWs~ 206 (440)
-+..+-+-++|..|+..-|-+.|-.+.+++ ++|. ..|.+.|. +|..|.---+.-.. |..-.|.+
T Consensus 23 lksKIHRatVT~AdL~Y~GSITID~dLldaAgIl~~--------EkV~IvNvnNG~RfeTYvI~GerGSG~I~lNG---- 90 (143)
T 1pqh_A 23 LQGKLHRVKVTHADLHYEGTCAIDQDFLDAAGILEN--------EAIDIWNVTNGKRFSTYAIAAERGSRIISVNG---- 90 (143)
T ss_dssp EEEEEEEEECCBCCSSSCCCEEEEHHHHHHHTCCTT--------CEEEEEETTTCCEEEEEEEEECTTCCCEECCG----
T ss_pred HHhhhcceEEeccccccceeEEECHHHHHHcCCCCC--------CEEEEEECCCCceEEEEEEEccCCCceEEech----
Confidence 344567778999999999999999999887 5554 36777775 78877643333222 34445533
Q ss_pred hhhccCCCCCCEEEEE
Q 013565 207 FVKDKKLDAGDVVSFH 222 (440)
Q Consensus 207 FVKdKkLkaGDvVvF~ 222 (440)
..++..++||.|++.
T Consensus 91 -AAArl~~~GD~VII~ 105 (143)
T 1pqh_A 91 -AAAHCASVGDIVIIA 105 (143)
T ss_dssp -GGGGTCCTTCEEEEE
T ss_pred -HHHccCCCCCEEEEE
Confidence 467778999999984
No 7
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=66.95 E-value=10 Score=31.29 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=34.8
Q ss_pred eEEEEEeCCCCeEEEEEEEeCCCcceEEecChhhhhhccCCCCCCEEEEEeccccCCCCeEEEEEEeCCC
Q 013565 173 LLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDWRRRSH 242 (440)
Q Consensus 173 ~~L~veD~~GK~W~FRysywn~SrrYVLTkGWs~FVKdKkLkaGDvVvF~R~~~e~~~grLfIgIRRa~~ 242 (440)
..+.+.|..| ..++..|+.. |++||+|.+....-+.-+|++-+.+-|...
T Consensus 40 ~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~ 89 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSSR 89 (106)
T ss_dssp EEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTSE
T ss_pred EEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcEE
Confidence 4788889999 4888888643 999999999844322345666665555443
No 8
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=64.14 E-value=62 Score=28.18 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=54.6
Q ss_pred cceeEEEecccCCCCCCCcEEeehhchhh--hCCCCCCCCCCCeEEEEEeC-CCCeEEEEEEEeC-CCcceEEecChhhh
Q 013565 132 KEHMFDKVVTPSDVGKLNRLVIPKQHAEK--YFPLDSSSNEKGLLLNFEDR-NGKPWRFRYSYWN-SSQSYVMTKGWSRF 207 (440)
Q Consensus 132 ke~lF~KvLT~SDV~k~gRLvIPKr~AEk--~FPLd~s~~~~g~~L~veD~-~GK~W~FRysywn-~SrrYVLTkGWs~F 207 (440)
+..+-+-++|..|+..-|-+.|-.+.++. ++|. ..|.+.|. +|..|.---+.-. .+..-.|.+
T Consensus 10 ksKIHratVT~a~L~Y~GSitID~~Ll~aA~i~~~--------E~V~I~NvnNG~Rf~TYvI~GerGSg~I~lNG----- 76 (114)
T 3oug_A 10 KSKISYATVTGKDLFYVGSITIDSEIMKQANIIEN--------EKVQVVNLNNGERLETYVIKGEPNSKTIALNG----- 76 (114)
T ss_dssp EEEEEEEECCEEESSCC-CEEEEHHHHHHTTCCTT--------BEEEEEETTTCCEEEEEEEEECTTSCCEEEEG-----
T ss_pred HhhhcceEEecccccccceEEECHHHHHHcCCCcC--------CEEEEEECCCCceEEEEEEEccCCCCEEEeCC-----
Confidence 33566778999999999999999999886 4554 46777785 7887765433332 234455544
Q ss_pred hhccCCCCCCEEEEE
Q 013565 208 VKDKKLDAGDVVSFH 222 (440)
Q Consensus 208 VKdKkLkaGDvVvF~ 222 (440)
..++..++||.|++.
T Consensus 77 AAAr~~~~GD~vII~ 91 (114)
T 3oug_A 77 PAARRCEIGDQLFII 91 (114)
T ss_dssp GGGGGCCTTCEEEEE
T ss_pred HHHhccCCCCEEEEE
Confidence 467778999999985
No 9
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=56.50 E-value=63 Score=28.96 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=55.9
Q ss_pred cceeEEEecccCCCCCCCcEEeehhchhh--hCCCCCCCCCCCeEEEEEeC-CCCeEEEEEEEeC-CCcceEEecChhhh
Q 013565 132 KEHMFDKVVTPSDVGKLNRLVIPKQHAEK--YFPLDSSSNEKGLLLNFEDR-NGKPWRFRYSYWN-SSQSYVMTKGWSRF 207 (440)
Q Consensus 132 ke~lF~KvLT~SDV~k~gRLvIPKr~AEk--~FPLd~s~~~~g~~L~veD~-~GK~W~FRysywn-~SrrYVLTkGWs~F 207 (440)
+..+-+-+.|..|+..-|-+.|-.+.+++ ++|.. .|.+.|. +|..|.---+.-. .+..-.|.+
T Consensus 7 ksKIHRatVT~AdL~Y~GSITID~dLldaAgIl~~E--------kV~IvNvnNG~RfeTYvI~GerGSG~I~lNG----- 73 (139)
T 2c45_A 7 KSKIHRATVTCADLHYVGSVTIDADLMDAADLLEGE--------QVTIVDIDNGARLVTYAITGERGSGVIGING----- 73 (139)
T ss_dssp CEEEEEEECCCEESSSCCEEEEEHHHHHHTTCCSSC--------CEEEEETTTCCEEEECEEEECTTTTCEEEES-----
T ss_pred hhcccceEEeccccccceeeEECHHHHHHcCCCCCC--------EEEEEECCCCceEEEEEEEccCCCCEEEEch-----
Confidence 44577888999999999999999999886 55543 5666775 7887664333322 244455644
Q ss_pred hhccCCCCCCEEEEEe
Q 013565 208 VKDKKLDAGDVVSFHR 223 (440)
Q Consensus 208 VKdKkLkaGDvVvF~R 223 (440)
..++..++||.|++.-
T Consensus 74 AAArl~~~GD~vII~a 89 (139)
T 2c45_A 74 AAAHLVHPGDLVILIA 89 (139)
T ss_dssp STTTTSCTTCEEEEEE
T ss_pred HHHccCCCCCEEEEEE
Confidence 4567778999999853
No 10
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=51.28 E-value=11 Score=30.19 Aligned_cols=41 Identities=7% Similarity=0.229 Sum_probs=32.6
Q ss_pred cceEEecChhhhhhccCCCCCCEEEEEeccccCCCCeEEEEEEeC
Q 013565 196 QSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDWRRR 240 (440)
Q Consensus 196 rrYVLTkGWs~FVKdKkLkaGDvVvF~R~~~e~~~grLfIgIRRa 240 (440)
..|.|+= =.+++++-+|+.||.+.+.-+ +.++.+.++.+|-
T Consensus 23 etyYInI-PaeI~kaLgIk~gD~fel~ve---~kdgeIvLcykRV 63 (68)
T 3o27_A 23 TTFYLLI-PKDIAEALDIKPDDTFILNME---QKDGDIVLSYKRV 63 (68)
T ss_dssp CCEEEEE-CHHHHHHTTCCTTCCEEEEEE---EETTEEEEEEEEC
T ss_pred eEEEEeC-cHHHHHHhCCCCCCEEEEEEe---cCCCeEEEEehhh
Confidence 4466643 369999999999999999886 3578898888883
No 11
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=48.56 E-value=42 Score=26.99 Aligned_cols=35 Identities=23% Similarity=0.499 Sum_probs=25.6
Q ss_pred eEEEEEeCCCCeEEEEEEEeCCCcceEEecChhhhhhccCCCCCCEEEEEec
Q 013565 173 LLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRG 224 (440)
Q Consensus 173 ~~L~veD~~GK~W~FRysywn~SrrYVLTkGWs~FVKdKkLkaGDvVvF~R~ 224 (440)
..+.+.|..| ..++..| .+.+.. .|++||+|.| +.
T Consensus 40 ~~~~l~DeTG---~I~~tlW------------~~~~~~-~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTLW------------NELADF-EVKKGDIAEV-SG 74 (97)
T ss_dssp EEEEEEETTE---EEEEEEE------------GGGGGC-CCCTTCEEEE-EE
T ss_pred EEEEEECCCC---cEEEEEE------------CCcccc-ccCCCCEEEE-EE
Confidence 4778889988 4666655 444444 8999999999 54
No 12
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=31.34 E-value=79 Score=25.93 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=34.5
Q ss_pred CeEEEEEeCCCCeEEEEEEEeCCCcceEEecChhhhhhccCCCCCCEEEEEeccccCCCCeEEEEEEeCC
Q 013565 172 GLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDWRRRS 241 (440)
Q Consensus 172 g~~L~veD~~GK~W~FRysywn~SrrYVLTkGWs~FVKdKkLkaGDvVvF~R~~~e~~~grLfIgIRRa~ 241 (440)
.+.+.+.|..|+ .++..|+.. ....|++||+|.+.-..-+.-+|++-|.+-|..
T Consensus 36 ~~~~~l~DeTG~---I~~t~W~~~-------------~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~ 89 (109)
T 2kbn_A 36 SQVGLLGDETGI---IKFTIWKNA-------------ELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNS 89 (109)
T ss_dssp EEEEEEECTTCC---EEEEEEGGG-------------CCCCCCTTCEEEEEEEEEEEETTEEEEEECSSS
T ss_pred EEEEEEECCCCe---EEEEEECcc-------------cccccCCCCEEEEEEEEEEEECCEEEEEECCce
Confidence 356788999995 777777532 235899999999973221224565555554443
No 13
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=30.75 E-value=89 Score=25.18 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCeEEEEEEEeCCCcceEEecChhhhhhccCCCCCCEEEEEecc
Q 013565 172 GLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGV 225 (440)
Q Consensus 172 g~~L~veD~~GK~W~FRysywn~SrrYVLTkGWs~FVKdKkLkaGDvVvF~R~~ 225 (440)
-..+.+.|..| ..++.+|+... | ....|++||+|.|.-..
T Consensus 44 ~~~~~l~D~TG---~I~~t~w~~~~-------~----~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 44 LANVIIADDTG---ELRAVFWTENI-------K----LLKKFREGDVIRIKDVN 83 (115)
T ss_dssp EEEEEEEETTE---EEEEEEETTGG-------G----GGGTCCTTSEEEEEEEE
T ss_pred EEEEEEEeCCC---eEEEEEeCchh-------h----hhhcCCCCCEEEEEeeE
Confidence 36788999999 78899996421 2 12579999999997653
No 14
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=30.74 E-value=76 Score=26.13 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=35.0
Q ss_pred CeEEEEEeCCCCeEEEEEEEeCCCcceEEecChhhhhhccCCCCCCEEEEEeccccCCCCeEEEEEEeCC
Q 013565 172 GLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDWRRRS 241 (440)
Q Consensus 172 g~~L~veD~~GK~W~FRysywn~SrrYVLTkGWs~FVKdKkLkaGDvVvF~R~~~e~~~grLfIgIRRa~ 241 (440)
-..+.+.|..|. .++..|+. .. ..|++||+|.|....-..-+|++-+.+.|..
T Consensus 39 ~~~~~l~D~TG~---I~~tlW~~------------~~--~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~~ 91 (119)
T 1o7i_A 39 ISEAIVGDETGR---VKLTLWGK------------HA--GSIKEGQVVKIENAWTTAFKGQVQLNAGSKT 91 (119)
T ss_dssp EEEEEEEETTEE---EEEEEEGG------------GT--TCCCTTCEEEEEEEEEEEETTEEEEEECTTC
T ss_pred EEEEEEEeCCCE---EEEEEECC------------hh--hcCCCCCEEEEEeEEEEEeCCEEEEEECCCE
Confidence 468889999995 77778753 21 2489999999985432234666666555543
No 15
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=30.39 E-value=56 Score=28.96 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=22.5
Q ss_pred CcceEEecChhhhh----------hccCCCCCCEEEEEe
Q 013565 195 SQSYVMTKGWSRFV----------KDKKLDAGDVVSFHR 223 (440)
Q Consensus 195 SrrYVLTkGWs~FV----------KdKkLkaGDvVvF~R 223 (440)
-..||..+||+.|- .-+.|++||+|+-.-
T Consensus 88 hPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVClslt 126 (133)
T 1oa8_A 88 YPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLT 126 (133)
T ss_dssp CCEEETTTEEEESCHHHHHHHHCCCCEECCTTCEEEEEE
T ss_pred CCcEEcCCcccccCHhHhhHhhCCcceecccCCEEEecc
Confidence 36688899998763 557899999998653
No 16
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=27.76 E-value=25 Score=28.75 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=15.7
Q ss_pred hhhccCCCCCCEEEEEec
Q 013565 207 FVKDKKLDAGDVVSFHRG 224 (440)
Q Consensus 207 FVKdKkLkaGDvVvF~R~ 224 (440)
....+..++||+|+|.-.
T Consensus 18 Wa~~~~f~vGD~L~F~y~ 35 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYN 35 (96)
T ss_dssp TTTTCCBCTTCEEEEECC
T ss_pred hccCceEcCCCEEEEEec
Confidence 477899999999999875
No 17
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=27.52 E-value=1.8e+02 Score=23.78 Aligned_cols=35 Identities=26% Similarity=0.530 Sum_probs=25.1
Q ss_pred eEEEEEeCCCCeEEEEEEEeCCCcceEEecChhhhhhccCCCCCCEEEEEec
Q 013565 173 LLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRG 224 (440)
Q Consensus 173 ~~L~veD~~GK~W~FRysywn~SrrYVLTkGWs~FVKdKkLkaGDvVvF~R~ 224 (440)
..+.+.|..| .+++..|+ +.+.. .|++||+|.| ..
T Consensus 43 ~~~~l~D~TG---~IrvtlW~------------~~a~~-~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 43 KSFIVRDETG---SIRVTLWD------------NLTDI-DVGRGDYVRV-RG 77 (105)
T ss_dssp EEEEEEETTE---EEEEEEEG------------GGGGS-CCCTTCEEEE-EE
T ss_pred EEEEEECCCC---cEEEEEEC------------ccccc-ccCCCCEEEE-EE
Confidence 4677888888 47777664 33333 8999999999 64
No 18
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=25.59 E-value=74 Score=27.97 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=29.9
Q ss_pred CeEEEEEeCCCCeEEEEEE---------EeCCCcceEE--ecChhhhhhccCCCCCCEEEE
Q 013565 172 GLLLNFEDRNGKPWRFRYS---------YWNSSQSYVM--TKGWSRFVKDKKLDAGDVVSF 221 (440)
Q Consensus 172 g~~L~veD~~GK~W~FRys---------ywn~SrrYVL--TkGWs~FVKdKkLkaGDvVvF 221 (440)
-+.|.+.|.+|++-...-. ....+-+|+| ..|| ++++++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 3566777777765555321 1111246888 4555 58899999999975
No 19
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=25.51 E-value=44 Score=25.96 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=27.5
Q ss_pred EEeCCCcceEEecChhhhhhccCCCCCCEEEEEeccccCCCCeEEEE
Q 013565 190 SYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFID 236 (440)
Q Consensus 190 sywn~SrrYVLTkGWs~FVKdKkLkaGDvVvF~R~~~e~~~grLfIg 236 (440)
..|+++..-.|-+ .+++.-+|.+||.|.|... ++++.|.
T Consensus 7 ~k~Gns~~v~iPk---~~~~~lgl~~gd~v~i~~~-----~~~iii~ 45 (82)
T 1mvf_D 7 KRWGNSPAVRIPA---TLMQALNLNIDDEVKIDLV-----DGKLIIE 45 (82)
T ss_dssp EEETTEEEEECCH---HHHHHTTCCTTCBEEEEEE-----TTEEEEE
T ss_pred EEECCccEEEECH---HHHHHcCCCCCCEEEEEEE-----CCEEEEE
Confidence 3455554445544 8899999999999999874 3556663
No 20
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=24.75 E-value=25 Score=29.86 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=16.2
Q ss_pred hhhhccCCCCCCEEEEEec
Q 013565 206 RFVKDKKLDAGDVVSFHRG 224 (440)
Q Consensus 206 ~FVKdKkLkaGDvVvF~R~ 224 (440)
.....+..++||+|+|.-.
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~ 41 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFA 41 (116)
T ss_dssp HHHTTCCEETTCEEEECCC
T ss_pred hccccccCcCCCEEEEEec
Confidence 4588899999999999764
No 21
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=24.34 E-value=87 Score=27.67 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=36.4
Q ss_pred CeEEEEEeCCCCeEEEEEEEeCCCcceEEecChhhhhhccCCCCCCEEEEEeccccCCCCeEEEEEEeCCCCC
Q 013565 172 GLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDWRRRSHPP 244 (440)
Q Consensus 172 g~~L~veD~~GK~W~FRysywn~SrrYVLTkGWs~FVKdKkLkaGDvVvF~R~~~e~~~grLfIgIRRa~~~~ 244 (440)
-..+.+-|..|. .+|.. |.+.+.. |++||+|.|....-+.-+|++.+.+-|...-.
T Consensus 63 V~~~lVgDeTG~---I~ftl------------W~e~~~~--l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie 118 (145)
T 1wjj_A 63 IVECLIGDETGC---ILFTA------------RNDQVDL--MKPGATVILRNSRIDMFKGTMRLGVDKWGRIE 118 (145)
T ss_dssp CEEEEEECSSCE---EEEEE------------CTTHHHH--TCTTCEEEEEEEEEEEETTEEEEEECTTCCBC
T ss_pred EEEEEEEcCCcE---EEEEE------------ecCCcCc--CCCCCEEEEeccEEEeECCEEEEEECCCEEEE
Confidence 357788899997 33333 6665543 88999999976432334667777666655443
No 22
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=23.19 E-value=73 Score=25.70 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.3
Q ss_pred ccCCCCCCEEEEEecc
Q 013565 210 DKKLDAGDVVSFHRGV 225 (440)
Q Consensus 210 dKkLkaGDvVvF~R~~ 225 (440)
-.+|++||.|.|.-..
T Consensus 59 l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 3679999999998764
No 23
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=22.39 E-value=1.8e+02 Score=25.22 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=30.2
Q ss_pred eEEEEEeCCCCeEEEEE---------EEeCCCcceEE--ecChhhhhhccCCCCCCEEEEEe
Q 013565 173 LLLNFEDRNGKPWRFRY---------SYWNSSQSYVM--TKGWSRFVKDKKLDAGDVVSFHR 223 (440)
Q Consensus 173 ~~L~veD~~GK~W~FRy---------sywn~SrrYVL--TkGWs~FVKdKkLkaGDvVvF~R 223 (440)
+.|.+.|.+|++-.... .+.+..-+|+| ..|| ++++++++||.|.+--
T Consensus 70 LDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~~~ 128 (136)
T 3pjy_A 70 LDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGT---VKRLGVSPGDRLEGAG 128 (136)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETTH---HHHHTCCTTCEEEETT
T ss_pred eEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcCh---HHhcCCCCCCEEEECc
Confidence 55666666666555421 11222346888 4655 5889999999998643
No 24
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=22.11 E-value=81 Score=24.95 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.3
Q ss_pred ccCCCCCCEEEEEecc
Q 013565 210 DKKLDAGDVVSFHRGV 225 (440)
Q Consensus 210 dKkLkaGDvVvF~R~~ 225 (440)
-.+|++||.|.|.-..
T Consensus 51 l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 4679999999998764
No 25
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=21.99 E-value=71 Score=29.59 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=28.5
Q ss_pred hhhhhhccCCCCCCEEEEEeccccCCCCeEEEEEEeCCC
Q 013565 204 WSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDWRRRSH 242 (440)
Q Consensus 204 Ws~FVKdKkLkaGDvVvF~R~~~e~~~grLfIgIRRa~~ 242 (440)
...+.+++.|+.||+|.|.+. ...|.|.|.+.....
T Consensus 129 f~~~F~~~~~~~G~~I~~~~~---p~~G~L~i~~s~~G~ 164 (208)
T 4dok_A 129 VVGFFQSKYFKANSVITYHFS---AKDGICEIGFETEGK 164 (208)
T ss_dssp HHHHHHTCEECTTCEEEEEEC---SSSCCEEEEEECTTS
T ss_pred HHHHhccCCCCCCCEEEEEEe---CCCCeEEEEEEeCCE
Confidence 556777889999999999997 345889988875554
No 26
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=21.76 E-value=94 Score=27.08 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=25.1
Q ss_pred cChhhhhhccCCCCCCEEEEEecc-cc-CCCCeEEEEEEeCCC
Q 013565 202 KGWSRFVKDKKLDAGDVVSFHRGV-GD-LAKGRLFIDWRRRSH 242 (440)
Q Consensus 202 kGWs~FVKdKkLkaGDvVvF~R~~-~e-~~~grLfIgIRRa~~ 242 (440)
.+...|.| .++.||.|+||... -+ +....=++||-+=..
T Consensus 29 ~~arn~lr--~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~ 69 (147)
T 2p5d_A 29 ERYKNTIN--KVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVVS 69 (147)
T ss_dssp GGGHHHHT--TCCTTCEEEEEECCBCSTTCBCCEEEEEEEECS
T ss_pred HHHHHHHH--hCCCCCEEEEEEecccCCCCCCCEEEEEEEEec
Confidence 44667887 79999999999111 01 223556777766554
No 27
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=20.61 E-value=97 Score=25.09 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=22.8
Q ss_pred hhhhhccCCCCCCEEEEEeccccCCCCeEEEEEE
Q 013565 205 SRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDWR 238 (440)
Q Consensus 205 s~FVKdKkLkaGDvVvF~R~~~e~~~grLfIgIR 238 (440)
-..++.-+|+.||+|.+.|.. .+.|+ +|..|
T Consensus 43 DPvar~~G~k~GdVvkI~R~S--~taG~-~v~YR 73 (77)
T 1eik_A 43 DPVAKAIGAKRGDIVKIIRKS--PTAEE-FVTYR 73 (77)
T ss_dssp SHHHHGGGCCTTCEEEEEEEE--TTTEE-EEEEE
T ss_pred CHhhHHhCCCCCCEEEEEECC--CCCCC-cEEEE
Confidence 478899999999999999973 23443 44444
No 28
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=20.47 E-value=40 Score=27.31 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.6
Q ss_pred hhhhccCCCCCCEEEEEec
Q 013565 206 RFVKDKKLDAGDVVSFHRG 224 (440)
Q Consensus 206 ~FVKdKkLkaGDvVvF~R~ 224 (440)
.....+..++||+|+|.-.
T Consensus 12 ~Wa~~~~f~vGD~L~F~y~ 30 (91)
T 1f56_A 12 NGARGKSFRAGDVLVFKYI 30 (91)
T ss_dssp BSCTTCCBCTTCEEEEECC
T ss_pred cCcCCccEeCCCEEEEEcc
Confidence 5688899999999999775
Done!