BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013567
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 388
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 389 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 448
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 508
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 509 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 566
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRELL 651
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 737
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 738 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 797
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 858 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 915
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRELL 1000
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 1027 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 1086
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 1087 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1146
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 1147 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1206
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 1207 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 1264
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 1265 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1324
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 1325 ANATAWLKDNPETAKEIEKKVRELL 1349
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 1373 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 1432
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 1433 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1492
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 1493 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1552
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 1553 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 1610
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 1611 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1670
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 1671 ANATAWLKDNPETAKEIEKKVRELL 1695
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 1721 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 1780
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 1781 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1840
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 1841 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1900
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 1901 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 1958
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 1959 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 2018
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 2019 ANATAWLKDNPETAKEIEKKVRELL 2043
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 205/293 (69%), Gaps = 3/293 (1%)
Query: 122 VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180
VET +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L IA Q+ G +DAE
Sbjct: 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71
Query: 181 HAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE 240
HA DP Y++ LGVD++NL+ QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEIE
Sbjct: 72 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131
Query: 241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300
GEIG +GL AR+MSQA+RK++GN ++ LIF+NQIR KIGV +GNPE T+GG ALK
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 191
Query: 301 FFASVRLEIRSTGKIKSXXXXXXXXXXXXXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCM 360
F+ASVRL+IR G +K P+KQAEF+I++GEG++ G +
Sbjct: 192 FYASVRLDIRRIGAVKE--GENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 249
Query: 361 LDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
+D ++ + GAWYSY +++GQG+ A +L+DNP +EIEK VR ++
Sbjct: 250 VDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 302
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/343 (50%), Positives = 229/343 (66%), Gaps = 5/343 (1%)
Query: 74 GKVNGFSSDSGDSRFLD--RQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLT 131
G S +G +D +Q+AL AA+ I FGKGS+ RLG VET +G L+
Sbjct: 1359 GSTGSMSGRTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLS 1418
Query: 132 LDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA 190
LD+ALG GGLP GRIVEI+GPESSGKTTL L IA Q+ G +DAEHA DP Y++
Sbjct: 1419 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK 1478
Query: 191 LGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGL 250
LGVD++NL+ QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL
Sbjct: 1479 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL 1538
Query: 251 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310
AR+MSQA+RK++GN ++ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR
Sbjct: 1539 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 1598
Query: 311 STGKIKSXXXXXXXXXXXXXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIV 370
G +K P+KQAEF+I++GEG++ G ++D ++
Sbjct: 1599 RIGAVKE--GENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLI 1656
Query: 371 VRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
+ GAWYSY +++GQG+ A +L+DNP +EIEK VR ++
Sbjct: 1657 EKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 1699
Score = 346 bits (887), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 388
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 389 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 448
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 508
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 509 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 566
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRELL 651
Score = 346 bits (887), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 737
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 738 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 797
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 858 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 915
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRELL 1000
Score = 346 bits (887), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 1028 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 1087
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 1088 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1147
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 1148 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1207
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 1208 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 1265
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 1266 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1325
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 1326 ANATAWLKDNPETAKEIEKKVRELL 1350
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 205/293 (69%), Gaps = 3/293 (1%)
Query: 122 VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180
VET +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L IA Q+ G +DAE
Sbjct: 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71
Query: 181 HAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE 240
HA DP Y++ LGVD++NL+ QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEIE
Sbjct: 72 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131
Query: 241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300
GEIG +GL AR+MSQA+RK++GN ++ LIF+NQIR KIGV +GNPE T+GG ALK
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 191
Query: 301 FFASVRLEIRSTGKIKSXXXXXXXXXXXXXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCM 360
F+ASVRL+IR G +K P+KQAEF+I++GEG++ G +
Sbjct: 192 FYASVRLDIRRIGAVKE--GENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 249
Query: 361 LDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
+D ++ + GAWYSY +++GQG+ A +L+DNP +EIEK VR ++
Sbjct: 250 VDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 302
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 5 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 64
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 65 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 124
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 125 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 184
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 185 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 242
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 243 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 302
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 303 ANATAWLKDNPETAKEIEKKVRELL 327
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 388
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 389 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 448
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 508
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 509 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 566
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 627 ANATAWLKDNPETAKEIEKKVRELL 651
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 737
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 738 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 797
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 858 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 915
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 976 ANATAWLKDNPETAKEIEKKVRELL 1000
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 1028 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 1087
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 1088 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1147
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 1148 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1207
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 1208 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 1265
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 1266 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1325
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 1326 ANATAWLKDNPETAKEIEKKVRELL 1350
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 205/293 (69%), Gaps = 3/293 (1%)
Query: 122 VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180
VET +G L+LD+ALG GGLP GRIVEI+GPESSGKTTL L IA Q+ G +DAE
Sbjct: 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71
Query: 181 HAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE 240
HA DP Y++ LGVD++NL+ QPD GE ALEI D + RSGA+D+I VDSV+ALTP+AEIE
Sbjct: 72 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131
Query: 241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300
GEIG +GL AR+MSQA+RK++GN ++ LIF+NQIR KIGV +GNPE T+GG ALK
Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 191
Query: 301 FFASVRLEIRSTGKIKSXXXXXXXXXXXXXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCM 360
F+ASVRL+IR G +K P+KQAEF+I++GEG++ G +
Sbjct: 192 FYASVRLDIRRIGAVKE--GENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 249
Query: 361 LDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
+D ++ + GAWYSY +++GQG+ A +L+DNP +EIEK VR ++
Sbjct: 250 VDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 302
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 346 bits (887), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 9 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 68
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 69 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 128
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 188
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 189 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 246
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 247 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 306
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 307 ANATAWLKDNPETAKEIEKKVRELL 331
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 345 bits (886), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 224/325 (68%), Gaps = 3/325 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
++Q+AL AA+ I FGKGS+ RLG VET +G L+LD+ALG GGLP GRIVEI
Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE
Sbjct: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSGA+D+I VDSV+ALTP+AEIEGEIG +GL AR+MSQA+RK++GN +
Sbjct: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K
Sbjct: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSET 243
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++GEG++ G ++D ++ + GAWYSY +++GQG+
Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMM 413
A +L+DNP +EIEK VR ++
Sbjct: 304 ANATAWLKDNPETAKEIEKKVRELL 328
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 345 bits (886), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 166/330 (50%), Positives = 232/330 (70%), Gaps = 3/330 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
DR++AL+ AM I+ +FGKGSV RLG + P+G ++LD+ALG GGLP+GR++EI
Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTT+ALHA+A Q GG A +DAEHA DP Y+K LGVD ++L+V QPD GE
Sbjct: 67 YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEIAD + RSGA+D+I +DSV+AL PRAEIEGE+G +GLQARLMSQALRKM+G +
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+G T IF+NQ+R KIGV +G+PE T+GG ALKF+ASVRL++R +K
Sbjct: 187 SGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD--GTDAVGNRT 244
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++G+G+S+ G ++D + + G+W++Y ++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
+ A ++L +N + EIEK ++ + G+V
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAV 334
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 344 bits (883), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 165/330 (50%), Positives = 232/330 (70%), Gaps = 3/330 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
DR++AL+ AM I+ +FGKGSV RLG + P+G ++LD+ALG GGLP+GR++EI
Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTT+ALHA+A Q GG A +DAEHA DP Y+K LGVD ++L+V QPD GE
Sbjct: 67 YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEIAD + RSGA+D+I +DSV+AL PRAEIEGE+G +GLQARLMSQALRKM+G +
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+G T IF+N++R KIGV +G+PE T+GG ALKF+ASVRL++R +K
Sbjct: 187 SGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD--GTDAVGNRT 244
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++G+G+S+ G ++D + + G+W++Y ++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
+ A ++L +N + EIEK ++ + G+V
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAV 334
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 343 bits (880), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 165/330 (50%), Positives = 231/330 (70%), Gaps = 3/330 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
DR++AL+ AM I+ +FGKGSV RLG + P+G ++LD+ALG GGLP+GR++EI
Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTT+ALHA+A Q GG A +DAEHA DP Y+K LGVD ++L+V QPD GE
Sbjct: 67 YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEIAD + RSGA+D+I +DSV+AL PRAEIEGE+G +GLQARLMSQALRKM+G +
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+G T IF+N +R KIGV +G+PE T+GG ALKF+ASVRL++R +K
Sbjct: 187 SGTTAIFINNLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD--GTDAVGNRT 244
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++G+G+S+ G ++D + + G+W++Y ++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
+ A ++L +N + EIEK ++ + G+V
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAV 334
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 165/330 (50%), Positives = 231/330 (70%), Gaps = 3/330 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
DR++AL+ AM I+ +FGKGSV RLG + P+G ++LD+ALG GGLP+GR++EI
Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEI 66
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTT+ALHA+A Q GG A +DAEHA DP Y+K LGVD ++L+V QPD GE
Sbjct: 67 YGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ 126
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEIAD + RSGA+D+I +DSV+AL PRAEIEGE+G +GLQARLMSQALRKM+G +
Sbjct: 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNN 186
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+G T IF+N +R KIGV +G+PE T+GG ALKF+ASVRL++R +K
Sbjct: 187 SGTTAIFINALREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD--GTDAVGNRT 244
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++G+G+S+ G ++D + + G+W++Y ++LGQG+
Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
+ A ++L +N + EIEK ++ + G+V
Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAV 334
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 342 bits (876), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 163/330 (49%), Positives = 231/330 (70%), Gaps = 3/330 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
DR++AL+ A+ I S+GKGSV RLG + P+G + LD+ALG GGLP+GR++EI
Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEI 65
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPESSGKTT+ALHA+A Q GG A +DAEHA DP Y+K LGVD ++L+V QPD GE
Sbjct: 66 YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEIAD + RSGA+D++ +DSV+AL PRAE+EGE+G +GLQARLMSQALRKM+G +
Sbjct: 126 ALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNN 185
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+G T IF+NQ+R KIGV +G+PE T+GG ALKF+ASVR+++R +K
Sbjct: 186 SGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKD--GTNAVGNRT 243
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+KQAEF+I++G+G+S+ G ++D ++ + GAW++Y ++LGQG+
Sbjct: 244 RVKVVKNKCLAPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGK 303
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGSV 418
+ A +L +N + +EIEK ++ + G+V
Sbjct: 304 ENARNFLVENADVADEIEKKIKEKLGIGAV 333
>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
Length = 356
Score = 320 bits (821), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 165/327 (50%), Positives = 220/327 (67%), Gaps = 9/327 (2%)
Query: 91 RQRALDAAMNDINSSFGKGSVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEI 148
++ L+ A+ I +FGKGS+ LG VE P+G L +D+A G GG P+GRIVEI
Sbjct: 7 KKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEI 66
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
FG ESSGKTTLALHAIAE QK+GG A +DAEHA DP Y+K LGVD+++L++ QPD+GE
Sbjct: 67 FGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ 126
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI D + RSG +DLI VDSV+AL PRAEIEG +G Q+GLQARLMSQALRK++G+ +K
Sbjct: 127 ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNK 186
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
+ +IF NQIR KIGV +G+PE T+GG+ALKF+A++R+E+R IK
Sbjct: 187 SKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKE--GKDVIGNVI 244
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQR----- 383
P+K A+ II+G+G+ + + + A IV RKG+WY Y +
Sbjct: 245 SVKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVS 304
Query: 384 LGQGRDKALQYLRDNPLLQEEIEKVVR 410
LGQG A+Q+L+DNP + EIE+ +R
Sbjct: 305 LGQGSSNAVQFLKDNPEIAGEIERRIR 331
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 317 bits (811), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 161/329 (48%), Positives = 227/329 (68%), Gaps = 2/329 (0%)
Query: 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEI 148
+R +A++ AM+ I +FGKGS+ +LG+ V+ +G L+LDLALG GG+P+GRI EI
Sbjct: 20 ERSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEI 79
Query: 149 FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208
+GPES GKTTLAL +A+ QK GG +DAEHA DP Y++ALGV+ + L+V QPDNGE
Sbjct: 80 YGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQ 139
Query: 209 ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268
ALEI + + RSGAID++ VDSV+ALTPRAEIEG++G GLQARLMSQALRK++ SK
Sbjct: 140 ALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSK 199
Query: 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSXXXXXXXXXXX 328
G IF+NQ+R KIGV YGNPE T+GG ALKF+ASVRL++R G+ +
Sbjct: 200 TGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQ-PTKVGNDAVANTV 258
Query: 329 XXXXXXXXXXXPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGR 388
P+K+ E +++G+G +L ++ A MDI+ + G++YSYGD+R+GQG+
Sbjct: 259 KIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGK 318
Query: 389 DKALQYLRDNPLLQEEIEKVVRSMMSDGS 417
+K + Y+ + P +++EI V + + G+
Sbjct: 319 EKTIAYIAERPEMEQEIRDRVMAAIRAGN 347
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 22/209 (10%)
Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ------KLGGNAM 175
V+ +G LD L GG+ + E FG SGKT L VQ L G A+
Sbjct: 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAV 145
Query: 176 LVDAEHAFD----PSYSKALGVDVENLI----VCQPDNGEMALEIADRM----CRSGAID 223
+D E F + +KALG+D++N++ + N + + I D + + +I
Sbjct: 146 YIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIK 205
Query: 224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283
LI VDSV++ RAE G + + ++ + +++ L +++ A +I NQ+ +
Sbjct: 206 LIVVDSVTSHF-RAEYPGR---ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP 261
Query: 284 GVYYGNPEVTSGGIALKFFASVRLEIRST 312
++YG+P V GG L +R++++ +
Sbjct: 262 DMFYGDPTVAVGGHTLYHVPGIRIQLKKS 290
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ------KLGGNAM 175
V+ +G LD L GG+ E FG SGKT L VQ L G A+
Sbjct: 86 VKKISTGSQALDGLLAGGIETRTXTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAV 145
Query: 176 LVDAEHAFD----PSYSKALGVDVEN----LIVCQPDNGEMALEIADRM----CRSGAID 223
+D E F + +KALG+D++N + + N + + I D + + +I
Sbjct: 146 YIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVDDLQELVSKDPSIK 205
Query: 224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283
LI VDSV++ RAE G + + ++ + +++ L +++ A +I NQ+ +
Sbjct: 206 LIVVDSVTSHF-RAEYPGR---ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVXARP 261
Query: 284 GVYYGNPEVTSGGIALKFFASVRLEIRST 312
+YG+P V GG L +R++++ +
Sbjct: 262 DXFYGDPTVAVGGHTLYHVPGIRIQLKKS 290
>pdb|1AA3|A Chain A, C-Terminal Domain Of The E. Coli Reca, Nmr, Minimized
Average Structure
Length = 63
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 358 GCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 413
G ++D ++ + GAWYSY +++GQG+ A +L+DNP +EIEK VR ++
Sbjct: 5 GELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 60
>pdb|1PZN|A Chain A, Rad51 (Rada)
pdb|1PZN|B Chain B, Rad51 (Rada)
pdb|1PZN|C Chain C, Rad51 (Rada)
pdb|1PZN|D Chain D, Rad51 (Rada)
pdb|1PZN|E Chain E, Rad51 (Rada)
pdb|1PZN|F Chain F, Rad51 (Rada)
pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 38/212 (17%)
Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA-------EVQKLGGNAMLVDA 179
+G +LD LGGG+ I E+FG SGKT LA H +A E L G+ + +D
Sbjct: 115 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVXVQLPPEEGGLNGSVIWIDT 173
Query: 180 EHAFDPS---------------------YSKALGVDVENLIVCQPDNGEMALEIADRMCR 218
E+ F P ++A + + L+V Q ++ L DR +
Sbjct: 174 ENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLLVQQAEDKIKELLNTDRPVK 233
Query: 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQ 278
L+ VDS+++ R+E IG + + + +++ L + A+ + NQ
Sbjct: 234 -----LLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284
Query: 279 IRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310
++ + ++G+P GG L A++R+ +R
Sbjct: 285 VQARPDAFFGDPTRPIGGHILAHSATLRVYLR 316
>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 28/213 (13%)
Query: 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGN 173
+V +G D LGGG+ I E FG +GKT L+ H + +L GG
Sbjct: 100 MVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGK 158
Query: 174 AMLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMALEIADRMC-----RSG 220
+ +D E+ F P + VD ++N++ + E +E+ D + +G
Sbjct: 159 IIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAG 218
Query: 221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280
L+ +DS+ AL R + G ++ + + ++Q L ++ + + + NQ+
Sbjct: 219 IFKLLIIDSIMALF-RVDFSGR---GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274
Query: 281 YKIG---VYYGNPEVTSGGIALKFFASVRLEIR 310
G + +P+ GG L ++ R+ +R
Sbjct: 275 ADPGATMTFQADPKKPIGGHILAHASTTRISLR 307
>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 28/213 (13%)
Query: 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGN 173
+V +G D LGGG+ I E FG +GKT L+ H + +L GG
Sbjct: 100 MVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGK 158
Query: 174 AMLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMALEIADRMC-----RSG 220
+ +D E+ F P + VD ++N++ + E +E+ D + +G
Sbjct: 159 IIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELLDYVAAKFHEEAG 218
Query: 221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280
L+ +DS+ AL R + G ++ + + ++Q L ++ + + + NQ+
Sbjct: 219 IFKLLIIDSIMALF-RVDFSGR---GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274
Query: 281 YKIG---VYYGNPEVTSGGIALKFFASVRLEIR 310
G + +P+ GG L ++ R+ +R
Sbjct: 275 ADPGATMTFQADPKKPIGGHILAHASTTRISLR 307
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAM-LVDAEHAFDP 185
+G +LD LGGG G + +++GP +SGKTTLAL + L G + VD E F P
Sbjct: 4 TGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL----QTGLLSGKKVAYVDTEGGFSP 59
Query: 186 ----SYSKALGVDVE----NLIVCQPDNGEMALEIADRMCRS--GAIDLICVDSVSALTP 235
++ G++ E I+ P + + + + ++ L+ VDS++A
Sbjct: 60 ERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY- 118
Query: 236 RAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281
RAE + GL A L S+ L+ + A K +I +NQ+ +
Sbjct: 119 RAE------ENRSGLIAEL-SRQLQVLLWIARKHNIPVIVINQVHF 157
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 50/219 (22%)
Query: 120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA-------EVQKLGG 172
A + +G +LD LGGG+ I E+FG SGKT LA H +A E L G
Sbjct: 2 ATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNG 60
Query: 173 NAMLVDAEHAFDP---------------------SYSKALGVDVENLIVCQPDNGEMALE 211
+ M +D E+ F P +Y++A + + L+V Q ++ L
Sbjct: 61 SVMWIDTENTFRPERIREIAQNRGLDPDEVLKHIAYARAFNSNHQMLLVQQAEDMIKELL 120
Query: 212 IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGC 271
DR + L+ VDS+++ R+E G + + Q L K + +
Sbjct: 121 NTDR-----PVKLLIVDSLTSHF-RSEYIGRGALAE-------RQQKLAKHLADLHRLAN 167
Query: 272 TLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310
Y I V+ N +GG L A++R+ +R
Sbjct: 168 L--------YDIAVFVTNQVQANGGHILAHSATLRVYLR 198
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-------GNAMLVDA 179
+G LD LGGG+ G I E+FG +GK+ L H +A ++ G + +D
Sbjct: 83 TGSKNLDTLLGGGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCLYIDT 141
Query: 180 EHAFDP----SYSKALGVD----VENLIVCQPDNGEMALEIAD---RMCRSGAIDLICVD 228
E F P S ++ G+D + N+ + N + L + D +M LI VD
Sbjct: 142 EGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVD 201
Query: 229 SVSALTPRAEI--EGEIGMQQIGLQARLMSQALRKMS 263
SV AL R + GE+ +Q+ L A+ M +AL++++
Sbjct: 202 SVMALY-RTDFSGRGELSARQMHL-AKFM-RALQRLA 235
>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
Magnesium
Length = 264
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALH-----------------AIAEVQKLGGNA 174
LD LGGGL + E G SGKT + +H A+++ + A
Sbjct: 29 LDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKA 87
Query: 175 MLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIADRMCRSGAI 222
+ +D E F P ++ G+D ++N V + N +M + +I D + I
Sbjct: 88 VYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNI 147
Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
L+ +DS+++ T R E G ++ + + + + + ++ A C ++ NQ+ K
Sbjct: 148 KLVVIDSLTS-TFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAK 203
Query: 283 IGVYYGNPEVTSGGIALKFFASVRLEIR 310
++G E GG + A+ R +R
Sbjct: 204 PDAFFGMAEQAIGGHIVGHAATFRFFVR 231
>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|B Chain B, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|C Chain C, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|D Chain D, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|E Chain E, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|F Chain F, Hexameric Ring Of Methanococcus Voltae Rada
Length = 266
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALH-----------------AIAEVQKLGGNA 174
LD LGGGL + E G SGKT + +H A+++ + A
Sbjct: 31 LDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKA 89
Query: 175 MLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIADRMCRSGAI 222
+ +D E F P ++ G+D ++N V + N +M + +I D + I
Sbjct: 90 VYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNI 149
Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
L+ +DS+++ T R E G ++ + + + + + ++ A C ++ NQ+ K
Sbjct: 150 KLVVIDSLTS-TFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAK 205
Query: 283 IGVYYGNPEVTSGGIALKFFASVRLEIR 310
++G E GG + A+ R +R
Sbjct: 206 PDAFFGMAEQAIGGHIVGHAATFRFFVR 233
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-------GNAMLVDA 179
+G LD LGGG+ G I E+FG +GK+ L H +A ++ G + +D
Sbjct: 162 TGSKNLDTLLGGGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCLYIDT 220
Query: 180 EHAFDP----SYSKALGVD----VENLIVCQPDNGEMALEIAD---RMCRSGAIDLICVD 228
E F P S ++ G+D + N+ + N + L + D +M LI VD
Sbjct: 221 EGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVD 280
Query: 229 SVSALTPRAEI--EGEIGMQQIGLQARLMSQALRKMS 263
SV AL R + GE+ +Q+ L A+ M +AL++++
Sbjct: 281 SVMALY-RTDFSGRGELSARQMHL-AKFM-RALQRLA 314
>pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp
pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Potassium Ions
pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Ammonium Ions
Length = 322
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 32/219 (14%)
Query: 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ------------- 168
V +G LD L GG+ + E G SGKT + +Q
Sbjct: 77 VWRLSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQMREKIFADLEGVV 136
Query: 169 ---KLGGNAMLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIA 213
A+ +D E F P ++ G+D ++N V + N +M + +I
Sbjct: 137 EEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQMLFAEKIE 196
Query: 214 DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTL 273
D + I L+ +DS+++ T R E G ++ + + + + + ++ A C +
Sbjct: 197 DLIKGGNNIKLVIIDSLTS-TFRNEFTGR---GKLAERQQKLGRHMATLNKLADLYNCIV 252
Query: 274 IFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRST 312
+ NQ+ K Y+G E GG + A+ R +R +
Sbjct: 253 LVTNQVAAKPDAYFGVAEQAIGGHVVGHAATFRFFLRKS 291
>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp
pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALH-----------------AIAEVQKLGGNA 174
LD LGGGL + E G SGKT + +H A+++ + A
Sbjct: 87 LDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKA 145
Query: 175 MLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIADRMCRSGAI 222
+ +D E F P ++ G+D ++N V + N +M + +I D + I
Sbjct: 146 VYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNI 205
Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
L+ +DS+++ T R E G ++ + + + + + ++ A C ++ NQ+ K
Sbjct: 206 KLVVIDSLTS-TFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAK 261
Query: 283 IGVYYGNPEVTSGGIALKFFASVRLEIR 310
++G E GG + A+ R +R
Sbjct: 262 PDAFFGMAEQAIGGHIVGHAATFRFFVR 289
>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALH-----------------AIAEVQKLGGNA 174
LD LGGGL + E G SGKT + +H A+++ + A
Sbjct: 84 LDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKA 142
Query: 175 MLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIADRMCRSGAI 222
+ +D E F P ++ G+D ++N V + N +M + +I D + I
Sbjct: 143 VYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNI 202
Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
L+ +DS+++ T R E G ++ + + + + + ++ A C ++ NQ+ K
Sbjct: 203 KLVVIDSLTS-TFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAK 258
Query: 283 IGVYYGNPEVTSGGIALKFFASVRLEIR 310
++G E GG + A+ R +R
Sbjct: 259 PDAFFGMAEQAIGGHIVGHAATFRFFVR 286
>pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium
pdb|2F1I|A Chain A, Recombinase In Complex With Amp-pnp
pdb|2F1J|A Chain A, Recombinase In Complex With Adp
Length = 322
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALH-----------------AIAEVQKLGGNA 174
LD LGGGL + E G SGKT + +H A+++ + A
Sbjct: 87 LDSVLGGGLESQSVTEFAGVFGSGKTQI-MHQSCVNLQNPEFLFYDEEAVSKGEVAQPKA 145
Query: 175 MLVDAEHAFDP----SYSKALGVD----VENLIVCQPDNGEMAL----EIADRMCRSGAI 222
+ +D + F P ++ G+D ++N V + N +M + +I D + I
Sbjct: 146 VYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNI 205
Query: 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282
L+ +DS+++ T R E G ++ + + + + + ++ A C ++ NQ+ K
Sbjct: 206 KLVVIDSLTS-TFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAK 261
Query: 283 IGVYYGNPEVTSGGIALKFFASVRLEIR 310
++G E GG + A+ R +R
Sbjct: 262 PDAFFGMAEQAIGGHIVGHAATFRFFVR 289
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 40/214 (18%)
Query: 120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA-------EVQKLGG 172
A + +G +LD LGGG+ I E+FG SGKT LA H +A E L G
Sbjct: 2 ATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNG 60
Query: 173 NAMLVDAEHAFDPSYSKAL----GVD----VENLIVCQP--DNGEMAL------EIADRM 216
+ + +D E+ F P + + G+D ++++ V + N +M L +I + +
Sbjct: 61 SVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELL 120
Query: 217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL 276
+ L+ VDS+++ R+E G + + Q L K + +
Sbjct: 121 NTDRPVKLLIVDSLTSHF-RSEYIGRGALAE-------RQQKLAKHLADLHRLANL---- 168
Query: 277 NQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310
Y I V+ N +GG L A++R+ +R
Sbjct: 169 ----YDIAVFVTNQVQANGGHILAHSATLRVYLR 198
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
P2
Length = 235
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180
+V +G L D + GG+P+G + + G +GKT +LH IA+ + G + V E
Sbjct: 1 MVSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60
Query: 181 HAFDP--SYSKALGVDVENLI 199
+ D +K D E I
Sbjct: 61 ESRDSIIRQAKQFNWDFEEYI 81
>pdb|3IO5|A Chain A, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
pdb|3IO5|B Chain B, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
Length = 333
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 8/171 (4%)
Query: 115 GSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNA 174
GS + P + L + GG+ G ++ + GP S K+ L ++ + +A
Sbjct: 1 GSHMDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDA 59
Query: 175 --MLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE-MALEIADRM--CRSGAIDLICVDS 229
+ D+E P+Y +++GVD E +I + E + +++ +++ G ++ +DS
Sbjct: 60 VCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDS 119
Query: 230 VSALTPRAEIEGEIGMQQIG--LQARLMSQALRKMSGNASKAGCTLIFLNQ 278
+ L + E E + + + +A+ M R ++ S I +N
Sbjct: 120 LGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170
>pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
Length = 243
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKT----TLALHAIAEVQKLG--GNAMLVDAE 180
+G LD L GG+ G I E FG +GKT TLA+ + + G G A +D E
Sbjct: 8 TGSKELDKLLQGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAXYIDTE 67
Query: 181 HAFDP 185
F P
Sbjct: 68 GTFRP 72
>pdb|1N25|A Chain A, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
pdb|1N25|B Chain B, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
Length = 368
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 63/171 (36%), Gaps = 26/171 (15%)
Query: 23 FSPFNMKTHSCLLSISS-SPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSS 81
+ F CL I P H + + A++ + A K K I + V +
Sbjct: 33 YLEFQYSFEMCLKCIKKEQPSHYKYHEKHY--ANAAIFADSKNQKTICQQAVDTV--LAK 88
Query: 82 DSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGG--- 138
DS L R++ L ND+ GS G A +E + +G L L
Sbjct: 89 KRVDSLQLTREQMLTNRFNDLLDRMD----IMFGSTGSADIEEWMAGVAWLHCLLPKMDS 144
Query: 139 -----------GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178
+PK R GP SGKTTL A A ++ GG A+ V+
Sbjct: 145 VVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTL---AAALLELCGGKALNVN 192
>pdb|4E2I|A Chain A, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|B Chain B, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|C Chain C, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|D Chain D, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|E Chain E, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|F Chain F, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|G Chain G, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|H Chain H, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|I Chain I, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|J Chain J, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|K Chain K, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|L Chain L, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
Length = 362
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 63/171 (36%), Gaps = 26/171 (15%)
Query: 23 FSPFNMKTHSCLLSISS-SPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSS 81
+ F CL I P H + + A++ + A K K I + V +
Sbjct: 27 YLEFQYSFEMCLKCIKKEQPSHYKYHEKHY--ANAAIFADSKNQKTICQQAVDTV--LAK 82
Query: 82 DSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGG--- 138
DS L R++ L ND+ GS G A +E + +G L L
Sbjct: 83 KRVDSLQLTREQMLTNRFNDLLDRMD----IMFGSTGSADIEEWMAGVAWLHCLLPKMDS 138
Query: 139 -----------GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178
+PK R GP SGKTTL A A ++ GG A+ V+
Sbjct: 139 VVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTL---AAALLELCGGKALNVN 186
>pdb|2H1L|A Chain A, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|B Chain B, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|C Chain C, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|D Chain D, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|E Chain E, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|F Chain F, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|G Chain G, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|H Chain H, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|I Chain I, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|J Chain J, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|K Chain K, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|L Chain L, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
Length = 370
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 63/171 (36%), Gaps = 26/171 (15%)
Query: 23 FSPFNMKTHSCLLSISS-SPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSS 81
+ F CL I P H + + A++ + A K K I + V +
Sbjct: 35 YLEFQYSFEMCLKCIKKEQPSHYKYHEKHY--ANAAIFADSKNQKTICQQAVDTV--LAK 90
Query: 82 DSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGG--- 138
DS L R++ L ND+ GS G A +E + +G L L
Sbjct: 91 KRVDSLQLTREQMLTNRFNDLLDRMD----IMFGSTGSADIEEWMAGVAWLHCLLPKMDS 146
Query: 139 -----------GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178
+PK R GP SGKTTL A A ++ GG A+ V+
Sbjct: 147 VVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTL---AAALLELCGGKALNVN 194
>pdb|1SVL|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVM|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|D Chain D, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|E Chain E, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|F Chain F, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVO|A Chain A, Structure Of Sv40 Large T Antigen Helicase Domain
pdb|1SVO|B Chain B, Structure Of Sv40 Large T Antigen Helicase Domain
Length = 377
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 63/171 (36%), Gaps = 26/171 (15%)
Query: 23 FSPFNMKTHSCLLSISS-SPLHCQSSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSS 81
+ F CL I P H + + A++ + A K K I + V +
Sbjct: 42 YLEFQYSFEMCLKCIKKEQPSHYKYHEKHY--ANAAIFADSKNQKTICQQAVDTV--LAK 97
Query: 82 DSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGG--- 138
DS L R++ L ND+ GS G A +E + +G L L
Sbjct: 98 KRVDSLQLTREQMLTNRFNDLLDRMD----IMFGSTGSADIEEWMAGVAWLHCLLPKMDS 153
Query: 139 -----------GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178
+PK R GP SGKTTL A A ++ GG A+ V+
Sbjct: 154 VVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTL---AAALLELCGGKALNVN 201
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA 190
G + KG ++ I GP GKTT + +A V++ + D A+ P Y KA
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTF-VKXLAGVEEPTEGKIEWDLTVAYKPQYIKA 358
>pdb|2KJQ|A Chain A, Solution Structure Of Protein Nmb1076 From Neisseria
Meningi Northeast Structural Genomics Consortium Target
Mr101b
Length = 149
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA------EHAFDPSYSKALGVD-V 195
G+ + ++G E +GK+ L +A+ + G NA +DA + AF+ Y L VD V
Sbjct: 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEY---LAVDQV 92
Query: 196 ENLIVCQPDNGEMAL--EIADRMCRSG 220
E L N E AL I +R SG
Sbjct: 93 EKL-----GNEEQALLFSIFNRFRNSG 114
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA 190
G + KG ++ I GP GKTT + +A V++ + D A+ P Y KA
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTF-VKMLAGVEEPTEGKVEWDLTVAYKPQYIKA 414
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA 190
G + KG ++ I GP GKTT + +A V++ + D A+ P Y KA
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTF-VKMLAGVEEPTEGKVEWDLTVAYKPQYIKA 428
>pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1IWP|L Chain L, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1MMF|A Chain A, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
pdb|1MMF|L Chain L, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
Length = 555
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 86 SRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFP 126
S LDRQ + +A+NDIN G G+ R+ + A ++ P
Sbjct: 506 SAILDRQFEVVSAVNDINDYQGPGTGYRISAERWAEIKNIP 546
>pdb|3M9G|A Chain A, Crystal Structure Of The Three-Pasta-Domain Of A SerTHR
KINASE FROM Staphylococcus Aureus
Length = 201
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 342 KQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLL 401
K E EII + G ++ + +D+V+ KG +G +++ALQ L+ L
Sbjct: 36 KYPENEII--KTTPNTGERVERGDSVDVVISKGPEKVKMPNVIGLPKEEALQKLKSLGLK 93
Query: 402 QEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENI 436
IEKV + G + S N + + NI
Sbjct: 94 DVTIEKVYNNQAPKGYIANQSVTANTEIAIHDSNI 128
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 135 ALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVD 194
A+G P+G + ++GP +GKT +A A+A + G L++ SK G
Sbjct: 232 AIGVKPPRG--ILLYGPPGTGKTLIA-RAVA--NETGAFFFLINGPEIM----SKLAGES 282
Query: 195 VENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAE-IEGEIGMQQIGLQAR 253
NL A E A++ A +I +D + A+ P+ E GE+ + R
Sbjct: 283 ESNL--------RKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEV-------ERR 323
Query: 254 LMSQALRKMSGNASKAGCTLI 274
++SQ L M G +A ++
Sbjct: 324 IVSQLLTLMDGLKQRAHVIVM 344
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 135 ALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVD 194
A+G P+G + ++GP +GKT +A A+A + G L++ SK G
Sbjct: 232 AIGVKPPRG--ILLYGPPGTGKTLIA-RAVA--NETGAFFFLINGPEIM----SKLAGES 282
Query: 195 VENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAE-IEGEIGMQQIGLQAR 253
NL A E A++ A +I +D + A+ P+ E GE+ + R
Sbjct: 283 ESNL--------RKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEV-------ERR 323
Query: 254 LMSQALRKMSGNASKAGCTLI 274
++SQ L M G +A ++
Sbjct: 324 IVSQLLTLMDGLKQRAHVIVM 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,250,154
Number of Sequences: 62578
Number of extensions: 427359
Number of successful extensions: 1498
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1391
Number of HSP's gapped (non-prelim): 72
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)