Query 013567
Match_columns 440
No_of_seqs 501 out of 4076
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00154 RecA: recA bacterial 100.0 4.8E-67 1E-71 518.0 29.5 320 93-414 1-322 (322)
2 cd00983 recA RecA is a bacter 100.0 1.8E-66 3.9E-71 515.6 31.9 322 91-414 2-324 (325)
3 PRK09354 recA recombinase A; P 100.0 7.6E-66 1.6E-70 514.5 33.9 325 89-415 5-330 (349)
4 TIGR02012 tigrfam_recA protein 100.0 1.3E-65 2.7E-70 509.3 28.2 319 91-411 2-321 (321)
5 PRK09519 recA DNA recombinatio 100.0 1.2E-46 2.7E-51 406.9 33.4 223 90-312 6-229 (790)
6 COG0468 RecA RecA/RadA recombi 100.0 4.6E-43 1E-47 341.1 24.3 269 90-367 6-278 (279)
7 TIGR02238 recomb_DMC1 meiotic 100.0 2.8E-32 6E-37 271.8 22.1 265 71-355 27-311 (313)
8 PLN03187 meiotic recombination 100.0 9.1E-32 2E-36 270.2 23.1 267 70-356 56-341 (344)
9 PLN03186 DNA repair protein RA 100.0 3.9E-30 8.4E-35 258.6 21.2 219 120-355 100-338 (342)
10 PTZ00035 Rad51 protein; Provis 100.0 5.6E-30 1.2E-34 257.8 21.5 259 77-355 55-333 (337)
11 PF08423 Rad51: Rad51; InterP 100.0 7.8E-30 1.7E-34 247.9 19.9 217 122-355 17-253 (256)
12 cd01393 recA_like RecA is a b 100.0 5.3E-29 1.1E-33 236.9 21.0 205 125-341 1-222 (226)
13 TIGR02239 recomb_RAD51 DNA rep 100.0 7.3E-29 1.6E-33 247.8 20.7 220 120-356 73-313 (316)
14 TIGR02236 recomb_radA DNA repa 100.0 3.1E-28 6.7E-33 243.2 23.1 218 120-354 72-308 (310)
15 PRK09361 radB DNA repair and r 100.0 5.4E-28 1.2E-32 230.3 22.5 213 123-356 3-223 (225)
16 PRK04301 radA DNA repair and r 100.0 7.7E-28 1.7E-32 241.1 22.0 219 120-355 79-315 (317)
17 cd01123 Rad51_DMC1_radA Rad51_ 100.0 1.8E-27 3.9E-32 227.7 21.6 213 125-354 1-234 (235)
18 cd01394 radB RadB. The archaea 100.0 5.4E-27 1.2E-31 222.3 22.7 210 125-354 1-217 (218)
19 PRK06321 replicative DNA helic 99.9 1.2E-25 2.6E-30 235.3 22.5 297 48-358 100-463 (472)
20 TIGR03600 phage_DnaB phage rep 99.9 2.2E-25 4.9E-30 231.6 21.5 280 48-341 82-415 (421)
21 COG1066 Sms Predicted ATP-depe 99.9 2.7E-25 5.8E-30 222.0 21.0 221 112-363 62-284 (456)
22 PRK05595 replicative DNA helic 99.9 4.2E-25 9E-30 230.9 22.4 295 48-358 92-436 (444)
23 TIGR02237 recomb_radB DNA repa 99.9 6.1E-25 1.3E-29 206.8 21.3 200 132-354 1-208 (209)
24 cd01121 Sms Sms (bacterial rad 99.9 4.4E-25 9.6E-30 224.7 21.7 214 113-356 52-267 (372)
25 TIGR00416 sms DNA repair prote 99.9 4E-25 8.7E-30 230.7 21.8 214 113-356 64-279 (454)
26 PRK08760 replicative DNA helic 99.9 4.4E-25 9.6E-30 231.8 22.2 295 49-358 118-465 (476)
27 PRK05748 replicative DNA helic 99.9 4.2E-25 9.1E-30 231.2 21.5 295 49-358 95-440 (448)
28 PRK05636 replicative DNA helic 99.9 6.9E-25 1.5E-29 231.2 22.3 294 48-357 154-499 (505)
29 PRK08006 replicative DNA helic 99.9 8.9E-25 1.9E-29 228.9 22.2 296 48-359 111-462 (471)
30 TIGR00665 DnaB replicative DNA 99.9 9.2E-25 2E-29 227.8 22.2 291 49-355 87-427 (434)
31 PRK11823 DNA repair protein Ra 99.9 1.6E-24 3.4E-29 226.0 23.2 213 116-358 53-267 (446)
32 PRK09165 replicative DNA helic 99.9 9.6E-25 2.1E-29 230.5 21.4 300 48-358 105-485 (497)
33 PRK06749 replicative DNA helic 99.9 1.9E-24 4E-29 224.3 21.9 290 49-354 84-421 (428)
34 PRK08840 replicative DNA helic 99.9 2.8E-24 6E-29 224.9 22.3 295 49-359 105-455 (464)
35 PRK08506 replicative DNA helic 99.9 2.5E-24 5.4E-29 226.2 22.0 292 54-358 88-449 (472)
36 PRK07004 replicative DNA helic 99.9 3.1E-24 6.7E-29 224.7 21.4 297 47-359 98-450 (460)
37 COG0305 DnaB Replicative DNA h 99.9 3.8E-24 8.3E-29 218.9 21.1 297 46-358 85-431 (435)
38 PRK06904 replicative DNA helic 99.9 5E-24 1.1E-28 223.5 22.5 295 49-358 108-460 (472)
39 TIGR03878 thermo_KaiC_2 KaiC d 99.9 7.6E-24 1.6E-28 206.5 21.0 216 124-357 3-254 (259)
40 TIGR03877 thermo_KaiC_1 KaiC d 99.9 1.1E-23 2.4E-28 202.6 21.0 201 124-355 2-230 (237)
41 PHA02542 41 41 helicase; Provi 99.9 1.2E-23 2.6E-28 220.2 21.0 281 55-358 86-426 (473)
42 KOG1434 Meiotic recombination 99.9 8.1E-25 1.8E-29 205.5 9.8 218 121-355 93-331 (335)
43 PRK04328 hypothetical protein; 99.9 3.8E-23 8.3E-28 200.4 20.9 205 122-357 2-234 (249)
44 TIGR03881 KaiC_arch_4 KaiC dom 99.9 7.1E-22 1.5E-26 188.6 21.2 202 124-355 1-226 (229)
45 PF06745 KaiC: KaiC; InterPro 99.9 2.1E-22 4.5E-27 192.0 15.8 201 125-355 1-221 (226)
46 KOG1564 DNA repair protein RHP 99.9 6E-22 1.3E-26 188.6 18.2 226 123-355 82-349 (351)
47 PF03796 DnaB_C: DnaB-like hel 99.9 2.2E-21 4.9E-26 188.9 19.3 220 124-359 1-256 (259)
48 cd01122 GP4d_helicase GP4d_hel 99.9 3.1E-21 6.7E-26 188.7 18.4 204 122-339 10-251 (271)
49 TIGR02655 circ_KaiC circadian 99.9 3.6E-21 7.7E-26 203.3 19.0 208 122-357 242-462 (484)
50 PRK06067 flagellar accessory p 99.9 7.8E-21 1.7E-25 182.3 17.3 207 121-358 3-228 (234)
51 PRK07773 replicative DNA helic 99.9 3.6E-21 7.9E-26 216.1 15.5 227 47-283 107-380 (886)
52 PRK09302 circadian clock prote 99.8 5.7E-20 1.2E-24 195.5 21.0 210 120-357 8-239 (509)
53 TIGR02655 circ_KaiC circadian 99.8 4.6E-20 1E-24 194.8 19.6 205 124-356 2-228 (484)
54 TIGR03880 KaiC_arch_3 KaiC dom 99.8 1E-19 2.2E-24 173.4 19.7 203 128-356 1-217 (224)
55 cd00984 DnaB_C DnaB helicase C 99.8 8.2E-20 1.8E-24 175.5 18.1 204 131-350 2-240 (242)
56 PRK09302 circadian clock prote 99.8 9E-20 2E-24 194.0 20.0 209 121-357 251-472 (509)
57 COG0467 RAD55 RecA-superfamily 99.8 1.5E-17 3.2E-22 162.2 20.8 210 122-359 2-235 (260)
58 PRK08533 flagellar accessory p 99.8 3.7E-17 7.9E-22 156.8 19.1 204 122-355 3-223 (230)
59 COG1135 AbcC ABC-type metal io 99.7 3.5E-18 7.6E-23 165.9 9.8 263 128-405 18-337 (339)
60 PRK05973 replicative DNA helic 99.7 7.3E-18 1.6E-22 161.5 11.8 136 132-284 54-197 (237)
61 KOG1433 DNA repair protein RAD 99.7 5.7E-17 1.2E-21 160.8 5.3 217 122-355 90-320 (326)
62 PF13481 AAA_25: AAA domain; P 99.6 1.8E-15 3.8E-20 140.2 7.6 150 121-281 10-190 (193)
63 cd01124 KaiC KaiC is a circadi 99.6 5.1E-14 1.1E-18 129.5 16.2 167 145-340 1-185 (187)
64 COG1136 SalX ABC-type antimicr 99.5 3.3E-14 7.1E-19 134.7 11.6 139 139-281 27-204 (226)
65 COG1126 GlnQ ABC-type polar am 99.5 2.1E-14 4.6E-19 133.5 10.0 154 139-302 24-218 (240)
66 COG1125 OpuBA ABC-type proline 99.5 2.4E-14 5.1E-19 135.9 10.3 162 139-304 23-220 (309)
67 COG2874 FlaH Predicted ATPases 99.5 4.4E-13 9.6E-18 124.4 13.7 201 124-355 9-228 (235)
68 TIGR02314 ABC_MetN D-methionin 99.5 9.4E-14 2E-18 140.7 9.9 258 139-404 27-339 (343)
69 COG3842 PotA ABC-type spermidi 99.5 1.1E-13 2.4E-18 139.1 9.7 177 129-310 18-227 (352)
70 cd01120 RecA-like_NTPases RecA 99.5 1.1E-12 2.3E-17 116.7 13.8 157 145-311 1-165 (165)
71 COG1118 CysA ABC-type sulfate/ 99.4 2.7E-13 5.9E-18 131.9 7.7 156 139-303 24-221 (345)
72 cd01125 repA Hexameric Replica 99.4 9E-12 1.9E-16 120.0 17.0 195 143-349 1-232 (239)
73 COG3839 MalK ABC-type sugar tr 99.4 8.7E-13 1.9E-17 132.0 9.4 166 139-308 25-222 (338)
74 COG1120 FepC ABC-type cobalami 99.4 1.1E-12 2.4E-17 126.6 9.5 155 139-303 24-222 (258)
75 COG2884 FtsE Predicted ATPase 99.4 2.7E-12 5.9E-17 117.2 10.2 157 124-285 10-202 (223)
76 COG1127 Ttg2A ABC-type transpo 99.4 3.4E-12 7.4E-17 120.6 11.0 160 139-303 30-229 (263)
77 COG1131 CcmA ABC-type multidru 99.4 2.7E-12 5.8E-17 127.5 10.4 169 129-302 18-219 (293)
78 COG1116 TauB ABC-type nitrate/ 99.3 3.6E-12 7.9E-17 121.4 10.1 133 139-282 25-193 (248)
79 COG4555 NatA ABC-type Na+ tran 99.3 4.1E-12 8.9E-17 117.0 9.0 153 131-288 17-201 (245)
80 COG1121 ZnuC ABC-type Mn/Zn tr 99.3 2E-11 4.3E-16 117.5 12.3 144 131-285 19-204 (254)
81 PRK11153 metN DL-methionine tr 99.3 6.6E-12 1.4E-16 127.4 9.2 159 139-301 27-222 (343)
82 PRK11650 ugpC glycerol-3-phosp 99.3 9.5E-12 2.1E-16 126.8 9.6 159 139-301 26-216 (356)
83 COG1124 DppF ABC-type dipeptid 99.3 9.6E-12 2.1E-16 117.8 8.4 158 139-305 29-227 (252)
84 COG3840 ThiQ ABC-type thiamine 99.3 1.3E-11 2.8E-16 112.1 8.8 138 139-285 21-195 (231)
85 TIGR03265 PhnT2 putative 2-ami 99.3 1.3E-11 2.9E-16 125.6 9.9 160 139-302 26-217 (353)
86 TIGR01186 proV glycine betaine 99.3 1.8E-11 3.8E-16 124.9 9.9 159 139-301 15-211 (363)
87 COG3638 ABC-type phosphate/pho 99.3 2.5E-11 5.4E-16 114.5 9.8 152 125-287 13-215 (258)
88 PRK11432 fbpC ferric transport 99.2 2.3E-11 5E-16 123.7 10.2 161 139-303 28-220 (351)
89 PRK13537 nodulation ABC transp 99.2 2.8E-11 6.1E-16 120.9 10.2 156 139-298 29-216 (306)
90 TIGR03258 PhnT 2-aminoethylpho 99.2 3.3E-11 7.1E-16 123.1 10.5 160 139-302 27-221 (362)
91 PRK11607 potG putrescine trans 99.2 3E-11 6.5E-16 124.0 10.1 159 139-301 41-231 (377)
92 PRK09452 potA putrescine/sperm 99.2 2.9E-11 6.2E-16 124.0 9.8 158 139-300 36-225 (375)
93 TIGR01188 drrA daunorubicin re 99.2 3E-11 6.5E-16 120.4 9.7 156 139-298 15-202 (302)
94 cd03261 ABC_Org_Solvent_Resist 99.2 6E-11 1.3E-15 113.7 10.6 138 139-285 22-202 (235)
95 PRK11144 modC molybdate transp 99.2 6.3E-11 1.4E-15 120.7 11.2 153 139-300 20-209 (352)
96 PRK10851 sulfate/thiosulfate t 99.2 3.8E-11 8.3E-16 122.2 9.3 153 140-301 25-218 (353)
97 PRK13536 nodulation factor exp 99.2 5.1E-11 1.1E-15 120.7 9.9 156 139-298 63-250 (340)
98 COG4604 CeuD ABC-type enteroch 99.2 1.7E-11 3.7E-16 112.6 5.8 56 139-195 23-81 (252)
99 TIGR00960 3a0501s02 Type II (G 99.2 5.1E-11 1.1E-15 112.7 9.2 137 139-284 25-202 (216)
100 COG0410 LivF ABC-type branched 99.2 6.9E-11 1.5E-15 111.3 9.5 141 139-282 25-199 (237)
101 cd03256 ABC_PhnC_transporter A 99.2 1.3E-10 2.9E-15 111.5 11.6 138 139-285 23-210 (241)
102 PRK11000 maltose/maltodextrin 99.2 6.4E-11 1.4E-15 121.3 9.8 153 139-300 25-214 (369)
103 COG4175 ProV ABC-type proline/ 99.2 1.3E-10 2.9E-15 113.6 11.2 159 139-306 50-251 (386)
104 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.2 6.8E-11 1.5E-15 111.9 9.1 136 139-283 26-204 (218)
105 TIGR02315 ABC_phnC phosphonate 99.2 1.6E-10 3.5E-15 111.2 11.7 67 139-206 24-96 (243)
106 cd03298 ABC_ThiQ_thiamine_tran 99.2 1.3E-10 2.9E-15 109.4 10.8 138 139-285 20-194 (211)
107 COG3845 ABC-type uncharacteriz 99.2 9.2E-11 2E-15 120.6 10.2 158 124-303 13-223 (501)
108 TIGR02142 modC_ABC molybdenum 99.2 1.2E-10 2.6E-15 118.7 11.0 152 139-299 19-211 (354)
109 cd03259 ABC_Carb_Solutes_like 99.2 9.2E-11 2E-15 110.7 9.2 138 139-285 22-196 (213)
110 cd03265 ABC_DrrA DrrA is the A 99.2 1.5E-10 3.2E-15 109.9 10.5 138 139-285 22-197 (220)
111 TIGR01288 nodI ATP-binding ABC 99.2 1.2E-10 2.6E-15 116.2 10.2 146 139-288 26-203 (303)
112 cd03293 ABC_NrtD_SsuB_transpor 99.2 1.2E-10 2.5E-15 110.6 9.6 136 139-285 26-197 (220)
113 cd03226 ABC_cobalt_CbiO_domain 99.2 1.7E-10 3.6E-15 108.3 10.4 137 139-284 22-190 (205)
114 cd03230 ABC_DR_subfamily_A Thi 99.1 3.2E-10 7E-15 103.7 11.7 126 139-284 22-159 (173)
115 PRK09536 btuD corrinoid ABC tr 99.1 1.4E-10 3E-15 119.9 10.1 155 139-302 25-221 (402)
116 cd03213 ABCG_EPDR ABCG transpo 99.1 3.1E-10 6.8E-15 105.9 11.5 123 139-281 31-172 (194)
117 cd03268 ABC_BcrA_bacitracin_re 99.1 1.9E-10 4E-15 108.2 9.6 70 139-209 22-92 (208)
118 cd03258 ABC_MetN_methionine_tr 99.1 3.6E-10 7.9E-15 108.1 11.8 138 139-285 27-206 (233)
119 cd03266 ABC_NatA_sodium_export 99.1 1.4E-10 3.1E-15 109.7 8.9 70 139-209 27-98 (218)
120 PRK10070 glycine betaine trans 99.1 1.7E-10 3.8E-15 119.0 10.1 157 139-299 50-244 (400)
121 cd03292 ABC_FtsE_transporter F 99.1 1.9E-10 4E-15 108.5 9.5 137 139-284 23-200 (214)
122 cd03269 ABC_putative_ATPase Th 99.1 2.3E-10 5E-15 107.7 10.1 68 140-209 23-90 (210)
123 cd03301 ABC_MalK_N The N-termi 99.1 2.6E-10 5.7E-15 107.5 10.4 138 139-285 22-196 (213)
124 TIGR01277 thiQ thiamine ABC tr 99.1 2.1E-10 4.5E-15 108.4 9.6 137 139-284 20-193 (213)
125 TIGR02673 FtsE cell division A 99.1 2.1E-10 4.4E-15 108.3 9.3 138 139-285 24-202 (214)
126 cd03262 ABC_HisP_GlnQ_permease 99.1 3.1E-10 6.6E-15 107.0 10.4 69 139-208 22-95 (213)
127 PRK11308 dppF dipeptide transp 99.1 4.3E-10 9.3E-15 113.4 12.0 155 139-302 37-237 (327)
128 cd03296 ABC_CysA_sulfate_impor 99.1 3.7E-10 8E-15 108.6 11.0 138 139-285 24-202 (239)
129 cd03219 ABC_Mj1267_LivG_branch 99.1 4.5E-10 9.7E-15 107.6 11.5 143 139-285 22-208 (236)
130 PRK11831 putative ABC transpor 99.1 3.4E-10 7.3E-15 111.0 10.9 143 139-285 29-209 (269)
131 cd03218 ABC_YhbG The ABC trans 99.1 4.7E-10 1E-14 107.2 11.6 138 139-285 22-198 (232)
132 TIGR03522 GldA_ABC_ATP gliding 99.1 1.8E-10 3.9E-15 114.8 9.0 155 139-298 24-210 (301)
133 COG1122 CbiO ABC-type cobalt t 99.1 3.1E-10 6.8E-15 109.0 10.2 60 138-198 25-88 (235)
134 COG1123 ATPase components of v 99.1 4.7E-10 1E-14 118.0 12.1 154 140-303 314-513 (539)
135 cd03229 ABC_Class3 This class 99.1 5.2E-10 1.1E-14 102.8 11.1 127 139-284 22-165 (178)
136 PRK15079 oligopeptide ABC tran 99.1 4.9E-10 1.1E-14 113.2 11.8 154 139-301 43-243 (331)
137 COG4181 Predicted ABC-type tra 99.1 5.3E-10 1.1E-14 100.8 10.6 133 140-281 33-208 (228)
138 PRK11629 lolD lipoprotein tran 99.1 6.1E-10 1.3E-14 106.7 11.9 137 139-284 31-210 (233)
139 cd03246 ABCC_Protease_Secretio 99.1 9.1E-10 2E-14 100.8 12.5 124 139-283 24-159 (173)
140 PRK11247 ssuB aliphatic sulfon 99.1 4.6E-10 1E-14 109.5 11.1 136 139-285 34-199 (257)
141 PRK09493 glnQ glutamine ABC tr 99.1 3.4E-10 7.3E-15 108.9 10.0 140 139-287 23-203 (240)
142 PRK13650 cbiO cobalt transport 99.1 2.5E-10 5.5E-15 112.5 9.3 137 138-283 28-204 (279)
143 cd03257 ABC_NikE_OppD_transpor 99.1 3.3E-10 7.2E-15 107.8 9.6 143 139-285 27-211 (228)
144 cd03216 ABC_Carb_Monos_I This 99.1 1.1E-09 2.3E-14 99.5 12.1 120 139-285 22-147 (163)
145 cd03225 ABC_cobalt_CbiO_domain 99.1 3.4E-10 7.3E-15 106.6 9.2 137 139-285 23-199 (211)
146 PRK10895 lipopolysaccharide AB 99.1 6E-10 1.3E-14 107.2 11.1 138 139-285 25-202 (241)
147 COG4148 ModC ABC-type molybdat 99.1 8.4E-11 1.8E-15 113.2 5.1 155 139-297 20-206 (352)
148 cd03294 ABC_Pro_Gly_Bertaine T 99.1 6.2E-10 1.4E-14 109.1 11.2 138 139-285 46-226 (269)
149 cd03215 ABC_Carb_Monos_II This 99.1 6.4E-10 1.4E-14 102.6 10.5 127 139-285 22-169 (182)
150 TIGR03005 ectoine_ehuA ectoine 99.1 6.6E-10 1.4E-14 107.7 11.1 138 139-285 22-212 (252)
151 TIGR01184 ntrCD nitrate transp 99.1 7E-10 1.5E-14 106.2 11.1 134 140-284 8-179 (230)
152 PRK13637 cbiO cobalt transport 99.1 6.9E-10 1.5E-14 109.9 11.3 137 138-284 28-209 (287)
153 cd03295 ABC_OpuCA_Osmoprotecti 99.1 8.7E-10 1.9E-14 106.2 11.7 138 139-285 23-201 (242)
154 TIGR03415 ABC_choXWV_ATP choli 99.1 4.1E-10 9E-15 115.6 10.0 158 140-301 47-246 (382)
155 cd03224 ABC_TM1139_LivF_branch 99.1 3.4E-10 7.4E-15 107.3 8.7 69 139-208 22-94 (222)
156 TIGR02211 LolD_lipo_ex lipopro 99.1 7.4E-10 1.6E-14 105.0 11.0 136 139-283 27-205 (221)
157 PRK11248 tauB taurine transpor 99.1 7E-10 1.5E-14 108.0 10.9 66 139-207 23-88 (255)
158 KOG1433 DNA repair protein RAD 99.1 3.2E-11 7E-16 120.0 1.6 312 89-414 4-324 (326)
159 PRK10908 cell division protein 99.1 7.8E-10 1.7E-14 105.1 10.9 137 139-284 24-201 (222)
160 PRK10771 thiQ thiamine transpo 99.1 8E-10 1.7E-14 105.8 11.0 62 139-201 21-83 (232)
161 COG4598 HisP ABC-type histidin 99.1 9.6E-10 2.1E-14 99.9 10.6 131 141-281 30-213 (256)
162 PRK11264 putative amino-acid A 99.1 1.1E-09 2.5E-14 105.8 12.1 138 139-285 25-209 (250)
163 cd03263 ABC_subfamily_A The AB 99.1 5.9E-10 1.3E-14 105.6 9.8 69 139-208 24-94 (220)
164 PRK10253 iron-enterobactin tra 99.1 8.1E-10 1.7E-14 108.0 11.1 63 139-202 29-94 (265)
165 PRK10584 putative ABC transpor 99.1 9.3E-10 2E-14 104.9 11.3 136 139-283 32-210 (228)
166 cd03234 ABCG_White The White s 99.1 8.5E-10 1.9E-14 105.2 11.0 73 138-211 28-103 (226)
167 COG1129 MglA ABC-type sugar tr 99.1 6.3E-10 1.4E-14 116.3 10.7 166 128-303 20-228 (500)
168 cd03297 ABC_ModC_molybdenum_tr 99.1 4.4E-10 9.6E-15 106.2 8.8 136 140-285 21-197 (214)
169 COG4608 AppF ABC-type oligopep 99.1 7.1E-10 1.5E-14 107.1 10.2 153 139-310 35-200 (268)
170 PRK14250 phosphate ABC transpo 99.1 8.9E-10 1.9E-14 106.2 10.9 137 139-285 25-197 (241)
171 cd03260 ABC_PstB_phosphate_tra 99.1 4.5E-10 9.7E-15 107.1 8.7 137 139-285 22-205 (227)
172 PRK11300 livG leucine/isoleuci 99.1 9.5E-10 2.1E-14 106.7 11.0 69 139-208 27-99 (255)
173 TIGR03864 PQQ_ABC_ATP ABC tran 99.1 1.5E-09 3.2E-14 104.2 12.1 136 139-283 23-196 (236)
174 PRK10619 histidine/lysine/argi 99.1 1.2E-09 2.7E-14 106.2 11.7 137 139-284 27-216 (257)
175 PRK10575 iron-hydroxamate tran 99.1 5.4E-10 1.2E-14 109.3 9.1 150 139-297 33-225 (265)
176 TIGR03740 galliderm_ABC gallid 99.1 5.7E-10 1.2E-14 106.1 9.0 67 139-207 22-88 (223)
177 cd03232 ABC_PDR_domain2 The pl 99.1 1.3E-09 2.8E-14 101.4 11.3 122 139-281 29-169 (192)
178 PRK13646 cbiO cobalt transport 99.0 1.2E-09 2.5E-14 108.2 11.5 144 131-285 22-211 (286)
179 cd03228 ABCC_MRP_Like The MRP 99.0 1.4E-09 3E-14 99.3 11.2 124 139-284 24-159 (171)
180 cd03267 ABC_NatA_like Similar 99.0 4.9E-10 1.1E-14 107.7 8.5 56 139-195 43-100 (236)
181 PRK13647 cbiO cobalt transport 99.0 1.1E-09 2.4E-14 107.7 10.9 59 139-198 27-88 (274)
182 PRK13634 cbiO cobalt transport 99.0 9.7E-10 2.1E-14 109.0 10.6 138 138-285 28-211 (290)
183 PRK13540 cytochrome c biogenes 99.0 2.1E-09 4.6E-14 100.6 12.3 69 139-208 23-93 (200)
184 COG1117 PstB ABC-type phosphat 99.0 4.7E-10 1E-14 104.5 7.6 165 138-311 28-239 (253)
185 TIGR03873 F420-0_ABC_ATP propo 99.0 1.6E-09 3.5E-14 105.3 11.5 60 139-199 23-85 (256)
186 PRK13635 cbiO cobalt transport 99.0 1.4E-09 3E-14 107.3 11.1 59 139-198 29-90 (279)
187 TIGR03410 urea_trans_UrtE urea 99.0 8.2E-10 1.8E-14 105.4 9.2 70 139-209 22-95 (230)
188 cd03300 ABC_PotA_N PotA is an 99.0 1E-09 2.3E-14 105.0 9.9 141 140-284 23-195 (232)
189 PRK13543 cytochrome c biogenes 99.0 1.9E-09 4.1E-14 102.1 11.6 67 139-206 33-99 (214)
190 TIGR01166 cbiO cobalt transpor 99.0 1.1E-09 2.4E-14 101.5 9.8 59 139-198 14-77 (190)
191 PRK13651 cobalt transporter AT 99.0 7E-10 1.5E-14 110.8 9.0 138 138-285 28-230 (305)
192 cd03235 ABC_Metallic_Cations A 99.0 1.2E-09 2.6E-14 103.1 10.1 57 139-198 21-77 (213)
193 cd03237 ABC_RNaseL_inhibitor_d 99.0 8.3E-10 1.8E-14 107.0 9.2 42 138-180 20-61 (246)
194 TIGR02769 nickel_nikE nickel i 99.0 1.7E-09 3.6E-14 105.8 11.3 140 139-287 33-218 (265)
195 PRK09984 phosphonate/organopho 99.0 1.8E-09 4E-14 105.2 11.6 68 139-207 26-104 (262)
196 PRK11614 livF leucine/isoleuci 99.0 6.7E-10 1.4E-14 106.6 8.3 70 138-208 26-99 (237)
197 TIGR03411 urea_trans_UrtD urea 99.0 1.3E-09 2.8E-14 104.9 10.3 69 139-208 24-96 (242)
198 PRK11231 fecE iron-dicitrate t 99.0 7.6E-10 1.6E-14 107.5 8.7 150 139-297 24-215 (255)
199 PRK13539 cytochrome c biogenes 99.0 1.4E-09 3.1E-14 102.3 10.3 69 139-208 24-92 (207)
200 PRK13640 cbiO cobalt transport 99.0 9.9E-10 2.2E-14 108.5 9.6 137 138-283 28-207 (282)
201 PRK13641 cbiO cobalt transport 99.0 1.5E-09 3.3E-14 107.4 10.9 137 139-285 29-210 (287)
202 TIGR01978 sufC FeS assembly AT 99.0 1.4E-09 3.1E-14 104.5 10.3 144 139-285 22-209 (243)
203 COG0444 DppD ABC-type dipeptid 99.0 7.5E-10 1.6E-14 109.1 8.4 168 139-310 27-244 (316)
204 PRK13643 cbiO cobalt transport 99.0 1.9E-09 4.1E-14 106.8 11.4 138 138-285 27-209 (288)
205 cd03299 ABC_ModC_like Archeal 99.0 1.9E-09 4.2E-14 103.4 11.1 68 140-208 22-90 (235)
206 PRK13652 cbiO cobalt transport 99.0 2.3E-09 4.9E-14 105.6 11.8 59 139-198 26-87 (277)
207 PRK09473 oppD oligopeptide tra 99.0 2.1E-09 4.5E-14 108.6 11.8 156 139-303 38-245 (330)
208 cd03264 ABC_drug_resistance_li 99.0 1.4E-09 3.1E-14 102.4 10.0 69 139-209 22-92 (211)
209 PRK10261 glutathione transport 99.0 1.8E-09 3.8E-14 118.0 12.1 153 139-300 346-544 (623)
210 cd03233 ABC_PDR_domain1 The pl 99.0 2.3E-09 5.1E-14 100.6 11.1 70 139-209 29-103 (202)
211 PRK11124 artP arginine transpo 99.0 2.1E-09 4.5E-14 103.5 10.9 137 139-284 24-205 (242)
212 PRK13644 cbiO cobalt transport 99.0 1.1E-09 2.4E-14 107.7 9.2 136 139-283 24-199 (274)
213 PRK13648 cbiO cobalt transport 99.0 3.2E-09 6.9E-14 104.0 12.3 59 139-198 31-92 (269)
214 TIGR01189 ccmA heme ABC export 99.0 1.8E-09 3.9E-14 100.8 10.1 69 139-208 22-92 (198)
215 PRK13548 hmuV hemin importer A 99.0 1.1E-09 2.4E-14 106.7 9.0 60 139-199 24-86 (258)
216 PRK13636 cbiO cobalt transport 99.0 1.7E-09 3.7E-14 106.8 10.4 59 139-198 28-91 (283)
217 COG0411 LivG ABC-type branched 99.0 3.7E-10 7.9E-15 107.2 5.3 77 128-206 16-96 (250)
218 cd03222 ABC_RNaseL_inhibitor T 99.0 3.8E-09 8.1E-14 97.4 11.7 114 139-284 21-136 (177)
219 TIGR02982 heterocyst_DevA ABC 99.0 1E-09 2.3E-14 104.1 8.2 69 139-208 27-101 (220)
220 PRK13633 cobalt transporter AT 99.0 3.1E-09 6.8E-14 104.8 11.8 60 138-198 31-94 (280)
221 TIGR02770 nickel_nikD nickel i 99.0 2.5E-09 5.5E-14 102.2 10.8 58 140-198 9-71 (230)
222 cd03214 ABC_Iron-Siderophores_ 99.0 5.3E-09 1.1E-13 96.3 12.5 128 139-285 21-163 (180)
223 PRK14267 phosphate ABC transpo 99.0 3.5E-09 7.5E-14 102.7 11.8 70 139-209 26-105 (253)
224 PRK15093 antimicrobial peptide 99.0 2.1E-09 4.6E-14 108.6 10.7 154 139-301 29-240 (330)
225 PRK13538 cytochrome c biogenes 99.0 1.7E-09 3.6E-14 101.6 9.3 68 139-207 23-92 (204)
226 PRK13631 cbiO cobalt transport 99.0 2.9E-09 6.4E-14 107.1 11.6 137 138-284 47-240 (320)
227 PRK10419 nikE nickel transport 99.0 2.8E-09 6.2E-14 104.4 11.2 142 139-288 34-220 (268)
228 PRK13541 cytochrome c biogenes 99.0 2.5E-09 5.4E-14 99.7 10.3 43 139-182 22-64 (195)
229 PRK15112 antimicrobial peptide 99.0 1.9E-09 4.1E-14 105.6 9.8 59 139-198 35-96 (267)
230 PRK15439 autoinducer 2 ABC tra 99.0 2.7E-09 5.9E-14 113.9 11.7 153 139-300 33-220 (510)
231 PRK11022 dppD dipeptide transp 99.0 3.2E-09 7E-14 107.1 11.5 155 139-302 29-236 (326)
232 PRK14247 phosphate ABC transpo 99.0 4.4E-09 9.5E-14 101.8 12.0 70 139-209 25-102 (250)
233 PRK13649 cbiO cobalt transport 99.0 3.2E-09 6.9E-14 104.6 11.2 138 138-285 28-210 (280)
234 cd03247 ABCC_cytochrome_bd The 99.0 2.1E-09 4.5E-14 98.8 9.2 124 138-283 23-160 (178)
235 TIGR03771 anch_rpt_ABC anchore 99.0 4.6E-09 9.9E-14 100.1 11.8 55 140-197 3-57 (223)
236 COG4152 ABC-type uncharacteriz 99.0 2.8E-09 6E-14 101.2 10.1 142 139-302 24-212 (300)
237 COG1137 YhbG ABC-type (unclass 99.0 4.1E-10 8.8E-15 103.9 4.3 162 139-304 26-223 (243)
238 TIGR03608 L_ocin_972_ABC putat 99.0 2.5E-09 5.4E-14 100.2 9.7 69 139-208 20-95 (206)
239 TIGR00972 3a0107s01c2 phosphat 99.0 4.2E-09 9.1E-14 101.8 11.6 68 139-208 23-100 (247)
240 PRK10247 putative ABC transpor 99.0 4.9E-09 1.1E-13 100.0 11.8 135 139-283 29-201 (225)
241 PRK14268 phosphate ABC transpo 99.0 4.5E-09 9.9E-14 102.3 11.8 140 139-285 34-218 (258)
242 COG1123 ATPase components of v 99.0 2.5E-09 5.4E-14 112.6 10.5 162 139-309 31-244 (539)
243 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.0 4.9E-09 1.1E-13 93.2 11.0 108 139-284 22-131 (144)
244 PRK13638 cbiO cobalt transport 99.0 2.3E-09 4.9E-14 105.2 9.6 59 139-198 23-86 (271)
245 PRK13642 cbiO cobalt transport 99.0 1.9E-09 4.1E-14 106.1 9.0 136 139-283 29-204 (277)
246 PRK13632 cbiO cobalt transport 99.0 4.2E-09 9E-14 103.4 11.4 60 138-198 30-92 (271)
247 TIGR03269 met_CoM_red_A2 methy 99.0 4E-09 8.6E-14 112.8 12.0 137 140-285 307-493 (520)
248 cd03231 ABC_CcmA_heme_exporter 99.0 3E-09 6.4E-14 99.7 9.6 61 139-200 22-84 (201)
249 PRK13645 cbiO cobalt transport 99.0 1.7E-09 3.6E-14 107.2 8.3 138 138-285 32-216 (289)
250 PRK10762 D-ribose transporter 99.0 3.4E-09 7.4E-14 112.8 11.3 153 139-300 26-221 (501)
251 TIGR00968 3a0106s01 sulfate AB 99.0 4.7E-09 1E-13 100.9 11.1 67 140-207 23-90 (237)
252 COG1134 TagH ABC-type polysacc 99.0 5.5E-09 1.2E-13 99.4 11.2 129 139-287 49-214 (249)
253 PRK13639 cbiO cobalt transport 98.9 4.4E-09 9.6E-14 103.4 11.1 60 138-198 23-87 (275)
254 PRK04296 thymidine kinase; Pro 98.9 1.2E-08 2.5E-13 95.2 13.2 137 143-311 2-141 (190)
255 PRK14256 phosphate ABC transpo 98.9 5.6E-09 1.2E-13 101.2 11.6 69 139-208 26-104 (252)
256 PRK14235 phosphate transporter 98.9 6.4E-09 1.4E-13 101.9 11.8 69 139-209 41-119 (267)
257 PRK14242 phosphate transporter 98.9 6.4E-09 1.4E-13 100.8 11.7 69 139-209 28-106 (253)
258 PRK10982 galactose/methyl gala 98.9 4.4E-09 9.6E-14 111.7 11.2 153 139-300 20-214 (491)
259 PRK09700 D-allose transporter 98.9 4.5E-09 9.7E-14 112.2 11.3 152 139-299 27-224 (510)
260 cd03223 ABCD_peroxisomal_ALDP 98.9 6.2E-09 1.4E-13 94.7 10.4 112 139-281 23-149 (166)
261 PRK09700 D-allose transporter 98.9 5.8E-09 1.3E-13 111.3 11.7 139 140-287 286-476 (510)
262 cd03217 ABC_FeS_Assembly ABC-t 98.9 5.8E-09 1.3E-13 97.7 10.3 126 139-284 22-168 (200)
263 PRK11701 phnK phosphonate C-P 98.9 8.9E-09 1.9E-13 100.2 11.8 42 139-181 28-69 (258)
264 PRK10938 putative molybdenum t 98.9 6.3E-09 1.4E-13 110.4 11.6 152 139-300 25-215 (490)
265 cd03252 ABCC_Hemolysin The ABC 98.9 5.8E-09 1.3E-13 100.0 10.0 62 139-201 24-88 (237)
266 PRK10418 nikD nickel transport 98.9 8.9E-09 1.9E-13 100.0 11.3 59 139-198 25-88 (254)
267 PRK15056 manganese/iron transp 98.9 6.2E-09 1.3E-13 102.2 10.2 43 139-182 29-71 (272)
268 PRK14270 phosphate ABC transpo 98.9 1.2E-08 2.6E-13 98.8 11.8 69 139-209 26-104 (251)
269 PRK10744 pstB phosphate transp 98.9 8.5E-09 1.8E-13 100.5 10.8 62 139-201 35-106 (260)
270 cd03245 ABCC_bacteriocin_expor 98.9 6.5E-09 1.4E-13 98.5 9.7 62 139-201 26-90 (220)
271 PRK11288 araG L-arabinose tran 98.9 7.5E-09 1.6E-13 110.2 11.2 154 138-300 25-220 (501)
272 COG4586 ABC-type uncharacteriz 98.9 6.4E-09 1.4E-13 100.1 9.4 131 139-288 46-225 (325)
273 PRK14274 phosphate ABC transpo 98.9 1.4E-08 3E-13 98.9 12.0 63 139-202 34-106 (259)
274 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.9 7E-09 1.5E-13 99.5 9.8 60 139-199 25-87 (238)
275 PRK14240 phosphate transporter 98.9 1.1E-08 2.4E-13 98.9 11.2 67 139-207 25-101 (250)
276 PRK14241 phosphate transporter 98.9 1.3E-08 2.8E-13 99.1 11.6 70 139-209 26-105 (258)
277 PRK13549 xylose transporter AT 98.9 7.8E-09 1.7E-13 110.2 11.0 153 139-300 27-223 (506)
278 TIGR02323 CP_lyasePhnK phospho 98.9 1.4E-08 3.1E-13 98.3 11.9 42 139-181 25-66 (253)
279 cd03251 ABCC_MsbA MsbA is an e 98.9 9.8E-09 2.1E-13 98.2 10.5 62 139-201 24-88 (234)
280 PRK14249 phosphate ABC transpo 98.9 1.2E-08 2.6E-13 98.8 11.2 68 139-208 26-103 (251)
281 TIGR01187 potA spermidine/putr 98.9 4.1E-09 8.9E-14 106.3 8.1 149 148-300 1-181 (325)
282 PRK11288 araG L-arabinose tran 98.9 1.1E-08 2.3E-13 109.0 11.5 141 140-289 276-465 (501)
283 PRK14263 phosphate ABC transpo 98.9 1.4E-08 3E-13 99.2 11.4 62 139-201 30-101 (261)
284 cd03253 ABCC_ATM1_transporter 98.9 9.1E-09 2E-13 98.5 9.9 62 139-201 23-87 (236)
285 cd03290 ABCC_SUR1_N The SUR do 98.9 5.6E-09 1.2E-13 98.9 8.2 139 139-283 23-205 (218)
286 cd00267 ABC_ATPase ABC (ATP-bi 98.9 2.1E-08 4.6E-13 90.0 11.6 119 139-284 21-144 (157)
287 PRK14269 phosphate ABC transpo 98.9 1.5E-08 3.2E-13 98.0 11.2 68 139-208 24-97 (246)
288 PRK14248 phosphate ABC transpo 98.9 1.5E-08 3.2E-13 99.3 11.3 63 139-202 43-115 (268)
289 TIGR02324 CP_lyasePhnL phospho 98.9 1.8E-08 3.9E-13 95.8 11.5 136 139-283 30-212 (224)
290 PRK13547 hmuV hemin importer A 98.9 1.4E-08 3.1E-13 99.8 11.0 58 139-197 23-91 (272)
291 PRK14245 phosphate ABC transpo 98.9 2.2E-08 4.9E-13 96.9 12.2 68 139-208 25-102 (250)
292 PRK10762 D-ribose transporter 98.9 1.4E-08 3.1E-13 108.1 11.7 149 139-296 274-471 (501)
293 PRK09544 znuC high-affinity zi 98.9 1.3E-08 2.7E-13 99.0 10.3 40 139-179 26-65 (251)
294 PRK14273 phosphate ABC transpo 98.8 1.7E-08 3.7E-13 97.9 11.0 68 139-208 29-106 (254)
295 TIGR02633 xylG D-xylose ABC tr 98.8 1.4E-08 2.9E-13 108.2 11.2 153 139-299 23-220 (500)
296 PRK13549 xylose transporter AT 98.8 1.8E-08 3.8E-13 107.5 12.1 141 139-288 284-473 (506)
297 PRK03695 vitamin B12-transport 98.8 2.7E-08 5.8E-13 96.4 12.4 42 139-182 18-59 (248)
298 COG4619 ABC-type uncharacteriz 98.8 2.6E-08 5.5E-13 89.8 11.0 136 127-282 14-196 (223)
299 TIGR01257 rim_protein retinal- 98.8 7.1E-09 1.5E-13 124.1 9.9 157 138-298 1960-2148(2272)
300 CHL00131 ycf16 sulfate ABC tra 98.8 2.4E-08 5.1E-13 96.7 11.8 43 139-182 29-73 (252)
301 PRK14258 phosphate ABC transpo 98.8 2E-08 4.4E-13 97.9 11.4 68 139-208 29-106 (261)
302 PRK14251 phosphate ABC transpo 98.8 2.4E-08 5.2E-13 96.7 11.7 69 139-209 26-104 (251)
303 PRK14262 phosphate ABC transpo 98.8 2E-08 4.4E-13 97.1 11.2 64 138-202 24-97 (250)
304 PRK14253 phosphate ABC transpo 98.8 2.3E-08 5E-13 96.6 11.5 67 139-207 25-100 (249)
305 PRK14236 phosphate transporter 98.8 2E-08 4.3E-13 98.6 11.1 68 139-208 47-124 (272)
306 PRK15439 autoinducer 2 ABC tra 98.8 1.9E-08 4.1E-13 107.5 11.8 142 139-289 285-472 (510)
307 cd03244 ABCC_MRP_domain2 Domai 98.8 1.2E-08 2.5E-13 96.8 9.1 61 139-200 26-89 (221)
308 PRK15134 microcin C ABC transp 98.8 1E-08 2.2E-13 110.0 9.6 144 139-287 308-493 (529)
309 PRK14275 phosphate ABC transpo 98.8 2.3E-08 5E-13 99.0 11.4 68 139-208 61-138 (286)
310 PRK09580 sufC cysteine desulfu 98.8 2.5E-08 5.4E-13 96.2 11.4 44 138-182 22-67 (248)
311 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 1.4E-08 3E-13 96.9 9.4 42 139-181 44-85 (224)
312 PRK14244 phosphate ABC transpo 98.8 2.7E-08 5.8E-13 96.4 11.5 63 139-202 27-99 (251)
313 PRK14271 phosphate ABC transpo 98.8 2.5E-08 5.4E-13 98.2 11.4 63 139-202 43-114 (276)
314 cd03369 ABCC_NFT1 Domain 2 of 98.8 2.7E-08 5.9E-13 93.5 11.1 62 139-201 30-94 (207)
315 KOG2373 Predicted mitochondria 98.8 1.3E-08 2.9E-13 100.4 9.2 192 128-339 259-477 (514)
316 PRK14237 phosphate transporter 98.8 3E-08 6.4E-13 97.1 11.8 68 139-208 42-119 (267)
317 TIGR02633 xylG D-xylose ABC tr 98.8 1.8E-08 3.9E-13 107.3 10.9 140 140-288 283-471 (500)
318 PRK14265 phosphate ABC transpo 98.8 2.4E-08 5.2E-13 98.2 11.0 62 139-201 42-113 (274)
319 PRK14254 phosphate ABC transpo 98.8 2.4E-08 5.1E-13 98.9 11.0 69 139-209 61-139 (285)
320 cd03254 ABCC_Glucan_exporter_l 98.8 4.9E-09 1.1E-13 99.9 5.9 60 139-199 25-87 (229)
321 PRK14272 phosphate ABC transpo 98.8 2.9E-08 6.4E-13 96.0 11.4 69 139-208 26-104 (252)
322 TIGR03269 met_CoM_red_A2 methy 98.8 3E-08 6.5E-13 106.1 12.6 152 139-299 22-248 (520)
323 TIGR01194 cyc_pep_trnsptr cycl 98.8 1.8E-08 3.8E-13 108.7 10.7 139 139-281 364-532 (555)
324 PRK14260 phosphate ABC transpo 98.8 3.8E-08 8.2E-13 95.9 12.0 69 139-209 29-107 (259)
325 PRK14259 phosphate ABC transpo 98.8 2.6E-08 5.6E-13 97.7 10.8 63 139-202 35-107 (269)
326 TIGR00955 3a01204 The Eye Pigm 98.8 3E-08 6.6E-13 108.2 12.2 162 131-302 40-249 (617)
327 PRK10261 glutathione transport 98.8 1.2E-08 2.6E-13 111.5 8.9 152 139-299 38-248 (623)
328 PLN03211 ABC transporter G-25; 98.8 2.7E-08 5.9E-13 109.2 11.6 162 132-299 84-286 (659)
329 PRK15064 ABC transporter ATP-b 98.8 2.2E-08 4.8E-13 107.4 10.7 40 139-179 23-62 (530)
330 cd03248 ABCC_TAP TAP, the Tran 98.8 2.1E-08 4.6E-13 95.4 9.5 60 139-199 36-98 (226)
331 PRK14238 phosphate transporter 98.8 2.5E-08 5.3E-13 98.0 10.2 63 139-202 46-118 (271)
332 PRK14252 phosphate ABC transpo 98.8 3.5E-08 7.7E-13 96.4 11.1 62 140-202 39-112 (265)
333 PRK14246 phosphate ABC transpo 98.8 4.8E-08 1E-12 95.2 11.9 68 139-207 32-108 (257)
334 COG4172 ABC-type uncharacteriz 98.8 2.2E-08 4.8E-13 101.0 9.6 161 139-308 309-515 (534)
335 TIGR03796 NHPM_micro_ABC1 NHPM 98.8 1.5E-08 3.2E-13 112.4 9.4 136 139-283 501-675 (710)
336 PRK14239 phosphate transporter 98.8 3.1E-08 6.6E-13 95.9 10.4 69 139-209 27-105 (252)
337 TIGR01257 rim_protein retinal- 98.8 1.6E-08 3.5E-13 121.2 10.1 155 139-298 952-1138(2272)
338 PRK10982 galactose/methyl gala 98.8 4.4E-08 9.5E-13 104.1 12.5 139 139-286 270-457 (491)
339 PRK15134 microcin C ABC transp 98.8 2.2E-08 4.8E-13 107.3 10.3 152 139-299 31-236 (529)
340 PRK14261 phosphate ABC transpo 98.8 3.6E-08 7.8E-13 95.6 10.8 62 139-201 28-99 (253)
341 PRK13409 putative ATPase RIL; 98.8 1.3E-08 2.9E-13 110.2 8.5 40 138-178 360-399 (590)
342 PRK13546 teichoic acids export 98.8 4.3E-08 9.3E-13 96.0 11.2 41 139-180 46-86 (264)
343 PRK14257 phosphate ABC transpo 98.8 3.9E-08 8.4E-13 99.4 11.1 155 139-300 104-304 (329)
344 cd03250 ABCC_MRP_domain1 Domai 98.8 2.7E-08 5.8E-13 93.3 9.3 40 139-179 27-66 (204)
345 cd03289 ABCC_CFTR2 The CFTR su 98.8 4.2E-08 9E-13 96.7 11.0 61 139-201 26-89 (275)
346 TIGR03797 NHPM_micro_ABC2 NHPM 98.8 3.1E-08 6.8E-13 109.4 11.2 138 139-283 475-648 (686)
347 PRK11176 lipid transporter ATP 98.8 2.5E-08 5.5E-13 108.0 10.3 62 139-201 365-429 (582)
348 PRK14255 phosphate ABC transpo 98.8 5.8E-08 1.3E-12 94.0 11.6 68 139-208 27-104 (252)
349 COG3598 RepA RecA-family ATPas 98.8 7.6E-08 1.7E-12 94.5 11.8 133 139-282 85-244 (402)
350 PRK10522 multidrug transporter 98.7 3.6E-08 7.9E-13 106.1 10.6 140 139-282 345-512 (547)
351 PRK14243 phosphate transporter 98.7 5.8E-08 1.3E-12 94.9 10.9 63 139-202 32-104 (264)
352 COG4559 ABC-type hemin transpo 98.7 1.1E-07 2.4E-12 88.7 11.9 70 139-209 23-95 (259)
353 PRK10938 putative molybdenum t 98.7 5.6E-08 1.2E-12 103.2 11.4 57 140-197 283-344 (490)
354 COG2274 SunT ABC-type bacterio 98.7 2.3E-08 5.1E-13 109.8 8.7 61 138-199 494-557 (709)
355 PRK14264 phosphate ABC transpo 98.7 6.5E-08 1.4E-12 96.7 11.1 62 139-201 67-138 (305)
356 PRK11174 cysteine/glutathione 98.7 3.4E-08 7.4E-13 107.1 9.6 60 139-200 372-434 (588)
357 PRK11819 putative ABC transpor 98.7 8.1E-08 1.8E-12 103.7 12.4 147 139-298 29-238 (556)
358 COG4525 TauB ABC-type taurine 98.7 4.6E-08 9.9E-13 90.2 8.7 134 138-282 26-195 (259)
359 TIGR00958 3a01208 Conjugate Tr 98.7 4.1E-08 8.9E-13 108.9 10.1 62 139-201 503-567 (711)
360 PRK14266 phosphate ABC transpo 98.7 8.7E-08 1.9E-12 92.7 10.9 62 139-201 25-96 (250)
361 cd03288 ABCC_SUR2 The SUR doma 98.7 8.2E-08 1.8E-12 93.5 10.4 61 139-200 43-106 (257)
362 PRK11160 cysteine/glutathione 98.7 5.7E-08 1.2E-12 105.2 10.1 62 139-201 362-426 (574)
363 cd03236 ABC_RNaseL_inhibitor_d 98.7 1.1E-07 2.3E-12 92.8 10.5 43 131-176 16-58 (255)
364 cd03238 ABC_UvrA The excision 98.7 3E-07 6.6E-12 84.7 12.8 123 139-283 17-152 (176)
365 TIGR02868 CydC thiol reductant 98.7 5.9E-08 1.3E-12 104.0 9.3 62 139-201 357-420 (529)
366 PRK10790 putative multidrug tr 98.7 7.2E-08 1.6E-12 104.7 10.0 63 139-202 363-428 (592)
367 COG1132 MdlB ABC-type multidru 98.7 9.2E-08 2E-12 103.4 10.6 79 122-202 331-416 (567)
368 TIGR03719 ABC_ABC_ChvD ATP-bin 98.7 1.4E-07 3E-12 101.8 11.7 62 138-208 26-87 (552)
369 TIGR02857 CydD thiol reductant 98.7 9.2E-08 2E-12 102.5 10.1 62 139-201 344-408 (529)
370 PRK15064 ABC transporter ATP-b 98.7 1.1E-07 2.4E-12 102.0 10.7 40 139-179 341-380 (530)
371 PRK13545 tagH teichoic acids e 98.6 7.4E-08 1.6E-12 102.0 8.8 43 138-181 45-87 (549)
372 cd00544 CobU Adenosylcobinamid 98.6 1.3E-07 2.8E-12 86.6 9.3 120 145-278 1-124 (169)
373 COG4618 ArpD ABC-type protease 98.6 1.3E-07 2.8E-12 98.0 10.3 64 139-203 358-424 (580)
374 TIGR01846 type_I_sec_HlyB type 98.6 9.5E-08 2.1E-12 105.8 10.0 61 139-200 479-542 (694)
375 PRK11147 ABC transporter ATPas 98.6 7.7E-08 1.7E-12 105.5 8.9 38 139-177 341-378 (635)
376 COG4161 ArtP ABC-type arginine 98.6 4.8E-07 1E-11 81.1 12.3 135 139-282 24-203 (242)
377 TIGR01842 type_I_sec_PrtD type 98.6 1.1E-07 2.3E-12 102.4 9.7 62 139-201 340-404 (544)
378 COG4988 CydD ABC-type transpor 98.6 1.4E-07 3.1E-12 99.3 10.1 62 139-201 343-407 (559)
379 TIGR03375 type_I_sec_LssB type 98.6 1.3E-07 2.9E-12 104.6 10.4 61 139-200 487-550 (694)
380 PRK13657 cyclic beta-1,2-gluca 98.6 1E-07 2.2E-12 103.6 9.1 61 139-200 357-420 (588)
381 PLN03140 ABC transporter G fam 98.6 7.9E-08 1.7E-12 113.5 8.7 161 138-301 186-419 (1470)
382 TIGR01193 bacteriocin_ABC ABC- 98.6 1.7E-07 3.7E-12 104.0 10.7 61 139-200 496-559 (708)
383 KOG0058 Peptide exporter, ABC 98.6 2.1E-07 4.6E-12 100.0 10.9 59 139-198 490-551 (716)
384 PRK15177 Vi polysaccharide exp 98.6 1.6E-07 3.4E-12 89.0 8.6 41 139-180 9-50 (213)
385 PRK11819 putative ABC transpor 98.6 1.6E-07 3.5E-12 101.3 9.2 39 139-178 346-384 (556)
386 TIGR00954 3a01203 Peroxysomal 98.6 9.7E-08 2.1E-12 105.1 7.5 39 139-178 474-512 (659)
387 COG1119 ModF ABC-type molybden 98.6 5.5E-07 1.2E-11 85.9 11.5 56 139-195 53-112 (257)
388 cd03291 ABCC_CFTR1 The CFTR su 98.6 1E-07 2.3E-12 94.2 7.0 40 139-179 59-98 (282)
389 COG4133 CcmA ABC-type transpor 98.6 6.2E-07 1.3E-11 82.3 11.3 45 140-185 25-69 (209)
390 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 1.6E-07 3.4E-12 101.4 8.8 39 139-178 344-382 (552)
391 TIGR02203 MsbA_lipidA lipid A 98.6 2.1E-07 4.6E-12 100.5 9.9 61 139-200 354-417 (571)
392 PRK10636 putative ABC transpor 98.6 1.3E-07 2.8E-12 103.6 8.1 41 139-180 23-63 (638)
393 COG4136 ABC-type uncharacteriz 98.6 4.3E-07 9.3E-12 80.6 9.7 63 139-202 24-90 (213)
394 KOG0055 Multidrug/pheromone ex 98.6 2.2E-07 4.8E-12 105.2 9.9 158 140-308 376-575 (1228)
395 TIGR01192 chvA glucan exporter 98.6 2.3E-07 4.9E-12 100.8 9.8 62 139-201 357-421 (585)
396 PLN03140 ABC transporter G fam 98.6 3.5E-07 7.7E-12 108.1 12.0 164 131-299 895-1100(1470)
397 TIGR00956 3a01205 Pleiotropic 98.6 1.6E-07 3.5E-12 110.9 9.1 164 132-299 77-290 (1394)
398 PRK10789 putative multidrug tr 98.6 2.9E-07 6.3E-12 99.6 10.5 62 139-201 337-401 (569)
399 PRK10636 putative ABC transpor 98.5 1.8E-07 3.9E-12 102.6 8.6 39 139-178 334-372 (638)
400 TIGR02204 MsbA_rel ABC transpo 98.5 3.9E-07 8.5E-12 98.6 11.1 61 139-200 362-425 (576)
401 PRK13409 putative ATPase RIL; 98.5 1.6E-07 3.4E-12 102.0 7.8 36 140-176 96-131 (590)
402 PTZ00265 multidrug resistance 98.5 3.1E-07 6.7E-12 108.8 10.9 64 138-202 406-473 (1466)
403 KOG0061 Transporter, ABC super 98.5 3.7E-07 8.1E-12 99.4 10.5 159 138-301 51-252 (613)
404 PRK10535 macrolide transporter 98.5 5.7E-07 1.2E-11 98.8 11.8 150 140-299 31-222 (648)
405 smart00382 AAA ATPases associa 98.5 2.3E-06 5E-11 72.7 13.0 125 142-279 1-125 (148)
406 PF13479 AAA_24: AAA domain 98.5 9.9E-07 2.1E-11 83.6 11.5 125 143-282 3-139 (213)
407 PRK11147 ABC transporter ATPas 98.5 4E-07 8.8E-12 99.8 10.0 41 139-180 25-65 (635)
408 PLN03130 ABC transporter C fam 98.5 4.3E-07 9.2E-12 108.7 10.9 159 139-305 1261-1457(1622)
409 PLN03232 ABC transporter C fam 98.5 5.8E-07 1.2E-11 107.1 11.4 62 139-201 1258-1322(1495)
410 KOG0057 Mitochondrial Fe/S clu 98.5 6.5E-07 1.4E-11 93.6 10.2 132 138-283 373-549 (591)
411 TIGR00957 MRP_assoc_pro multi 98.5 4.9E-07 1.1E-11 107.9 10.2 62 139-201 1308-1372(1522)
412 TIGR00956 3a01205 Pleiotropic 98.5 3.9E-07 8.4E-12 107.8 9.2 77 132-211 779-858 (1394)
413 PTZ00265 multidrug resistance 98.5 5.5E-07 1.2E-11 106.7 10.3 62 139-201 1190-1308(1466)
414 COG4107 PhnK ABC-type phosphon 98.4 1.8E-06 4E-11 78.4 11.0 136 140-283 29-215 (258)
415 COG4615 PvdE ABC-type sideroph 98.4 5.3E-07 1.2E-11 90.9 8.1 124 139-281 345-510 (546)
416 PLN03073 ABC transporter F fam 98.4 5E-07 1.1E-11 100.1 8.7 40 139-179 531-570 (718)
417 COG4987 CydC ABC-type transpor 98.4 1E-06 2.2E-11 92.1 10.2 61 139-200 360-423 (573)
418 PTZ00243 ABC transporter; Prov 98.4 8.6E-07 1.9E-11 105.9 10.9 63 139-202 1332-1397(1560)
419 COG4778 PhnL ABC-type phosphon 98.4 1.1E-06 2.4E-11 79.5 8.6 135 139-281 33-213 (235)
420 PRK05800 cobU adenosylcobinami 98.4 1E-06 2.3E-11 80.7 8.4 121 143-280 1-126 (170)
421 PF13401 AAA_22: AAA domain; P 98.4 1.3E-06 2.8E-11 75.3 8.4 114 141-279 2-125 (131)
422 PF00005 ABC_tran: ABC transpo 98.4 2.4E-07 5.2E-12 80.8 3.7 68 140-208 8-78 (137)
423 COG0396 sufC Cysteine desulfur 98.3 2.7E-06 5.9E-11 80.4 9.6 47 139-186 26-74 (251)
424 KOG0055 Multidrug/pheromone ex 98.3 3.4E-06 7.5E-11 95.8 12.1 60 139-199 1012-1074(1228)
425 TIGR01271 CFTR_protein cystic 98.3 1.6E-06 3.5E-11 103.3 9.8 62 139-202 1241-1305(1490)
426 COG1101 PhnK ABC-type uncharac 98.3 5.7E-06 1.2E-10 77.6 11.2 57 128-185 14-73 (263)
427 KOG0056 Heavy metal exporter H 98.3 2.3E-06 5.1E-11 88.3 9.2 70 126-197 548-620 (790)
428 COG4167 SapF ABC-type antimicr 98.3 6.5E-06 1.4E-10 75.4 11.0 55 140-195 36-93 (267)
429 cd03283 ABC_MutS-like MutS-lik 98.3 7E-06 1.5E-10 77.1 11.2 27 141-168 23-49 (199)
430 COG0488 Uup ATPase components 98.3 6E-06 1.3E-10 88.2 11.9 40 139-179 25-64 (530)
431 KOG0059 Lipid exporter ABCA1 a 98.3 2E-06 4.4E-11 97.5 8.8 145 138-300 586-778 (885)
432 cd03278 ABC_SMC_barmotin Barmo 98.2 9E-06 1.9E-10 76.2 11.2 28 140-169 20-47 (197)
433 COG4172 ABC-type uncharacteriz 98.2 2.4E-06 5.2E-11 86.6 7.5 166 139-312 32-250 (534)
434 KOG0054 Multidrug resistance-a 98.2 1.5E-05 3.2E-10 92.5 13.1 69 131-200 1151-1225(1381)
435 PLN03073 ABC transporter F fam 98.2 4.1E-06 8.8E-11 92.9 8.3 40 139-179 199-242 (718)
436 PRK07721 fliI flagellum-specif 98.2 1E-05 2.2E-10 84.6 10.5 109 123-234 140-261 (438)
437 TIGR01271 CFTR_protein cystic 98.1 7.9E-06 1.7E-10 97.5 10.6 40 139-179 448-487 (1490)
438 cd03243 ABC_MutS_homologs The 98.1 1.5E-05 3.2E-10 74.8 10.1 25 142-167 28-52 (202)
439 PF07088 GvpD: GvpD gas vesicl 98.1 4.9E-05 1.1E-09 77.0 14.2 133 141-282 8-159 (484)
440 COG4674 Uncharacterized ABC-ty 98.1 4.1E-06 8.9E-11 77.5 6.0 51 128-180 17-67 (249)
441 TIGR02858 spore_III_AA stage I 98.1 1.3E-05 2.8E-10 78.8 9.3 113 144-281 112-230 (270)
442 TIGR00957 MRP_assoc_pro multi 98.1 1.3E-05 2.9E-10 95.8 11.1 40 139-179 660-699 (1522)
443 TIGR01618 phage_P_loop phage n 98.1 3.3E-05 7.1E-10 73.6 11.3 124 143-281 12-144 (220)
444 cd03280 ABC_MutS2 MutS2 homolo 98.1 2.7E-05 5.8E-10 73.0 10.3 23 142-165 26-49 (200)
445 cd03271 ABC_UvrA_II The excisi 98.1 2.4E-05 5.1E-10 76.6 10.1 27 139-165 17-43 (261)
446 PF01695 IstB_IS21: IstB-like 98.0 8.8E-06 1.9E-10 75.1 6.4 79 139-234 43-121 (178)
447 COG0488 Uup ATPase components 98.0 3.6E-05 7.8E-10 82.3 11.8 126 138-285 343-501 (530)
448 PTZ00243 ABC transporter; Prov 98.0 1.3E-05 2.8E-10 96.0 8.6 39 139-178 682-720 (1560)
449 PRK12726 flagellar biosynthesi 98.0 6.3E-05 1.4E-09 76.9 12.0 90 140-234 203-298 (407)
450 cd03272 ABC_SMC3_euk Eukaryoti 98.0 4.4E-05 9.5E-10 73.3 10.2 23 143-166 23-45 (243)
451 COG1245 Predicted ATPase, RNas 97.9 2.8E-05 6E-10 80.0 8.5 125 138-281 362-517 (591)
452 PLN03130 ABC transporter C fam 97.9 3.3E-05 7.1E-10 92.8 10.5 38 139-177 639-677 (1622)
453 cd03240 ABC_Rad50 The catalyti 97.9 4.4E-05 9.6E-10 71.9 9.4 20 145-165 24-43 (204)
454 PF00004 AAA: ATPase family as 97.9 5.4E-05 1.2E-09 64.8 9.0 115 146-284 1-116 (132)
455 cd03270 ABC_UvrA_I The excisio 97.9 7.1E-05 1.5E-09 71.6 10.5 26 139-164 17-42 (226)
456 cd00009 AAA The AAA+ (ATPases 97.9 0.0001 2.2E-09 63.2 10.5 41 142-182 18-58 (151)
457 PRK08181 transposase; Validate 97.9 4.1E-05 8.8E-10 75.3 8.5 118 140-291 103-221 (269)
458 PRK06526 transposase; Provisio 97.9 2.4E-05 5.3E-10 76.2 6.9 42 139-180 94-135 (254)
459 PRK09183 transposase/IS protei 97.9 5.1E-05 1.1E-09 74.2 9.0 41 140-180 99-139 (259)
460 PF00448 SRP54: SRP54-type pro 97.9 0.00015 3.2E-09 68.0 11.6 88 144-234 2-96 (196)
461 KOG0065 Pleiotropic drug resis 97.9 1.4E-05 3E-10 91.2 5.4 64 132-197 807-872 (1391)
462 cd03115 SRP The signal recogni 97.9 0.00033 7.1E-09 63.7 13.4 86 145-233 2-94 (173)
463 KOG2859 DNA repair protein, me 97.9 0.00014 3.1E-09 68.2 10.8 135 142-279 37-209 (293)
464 COG5265 ATM1 ABC-type transpor 97.8 0.00013 2.7E-09 74.7 10.7 60 139-199 285-347 (497)
465 cd03227 ABC_Class2 ABC-type Cl 97.8 0.00031 6.8E-09 63.5 12.1 113 143-282 21-143 (162)
466 COG2401 ABC-type ATPase fused 97.8 0.00012 2.5E-09 74.8 9.9 128 139-284 405-572 (593)
467 cd03284 ABC_MutS1 MutS1 homolo 97.8 0.00011 2.5E-09 69.8 9.3 24 144-168 31-54 (216)
468 PLN03232 ABC transporter C fam 97.8 4.8E-05 1E-09 91.0 8.2 34 139-173 639-672 (1495)
469 TIGR00064 ftsY signal recognit 97.7 0.00066 1.4E-08 66.9 14.4 90 142-234 71-167 (272)
470 cd03279 ABC_sbcCD SbcCD and ot 97.7 0.00011 2.4E-09 69.4 8.6 25 141-166 26-50 (213)
471 COG1618 Predicted nucleotide k 97.7 0.00022 4.7E-09 64.2 9.8 31 145-175 7-37 (179)
472 PRK10416 signal recognition pa 97.7 0.00057 1.2E-08 68.8 13.8 90 141-234 112-209 (318)
473 cd03287 ABC_MSH3_euk MutS3 hom 97.7 0.00026 5.6E-09 67.7 10.6 34 140-174 28-62 (222)
474 PRK08727 hypothetical protein; 97.7 0.0003 6.4E-09 67.6 11.0 95 143-279 41-135 (233)
475 PRK06002 fliI flagellum-specif 97.7 2.2E-05 4.8E-10 81.9 3.4 109 123-234 147-267 (450)
476 TIGR03499 FlhF flagellar biosy 97.7 0.00017 3.6E-09 71.4 9.4 82 141-230 192-281 (282)
477 PRK12377 putative replication 97.7 0.00016 3.4E-09 70.3 9.0 105 144-280 102-206 (248)
478 cd01130 VirB11-like_ATPase Typ 97.7 9.8E-05 2.1E-09 68.4 7.1 38 140-178 22-59 (186)
479 cd03282 ABC_MSH4_euk MutS4 hom 97.7 0.00029 6.4E-09 66.4 10.4 29 139-168 25-53 (204)
480 PRK11889 flhF flagellar biosyn 97.7 0.001 2.2E-08 68.5 14.6 87 143-234 241-333 (436)
481 PRK10867 signal recognition pa 97.7 0.00046 1E-08 72.2 12.5 89 143-234 100-196 (433)
482 PRK12724 flagellar biosynthesi 97.7 0.0003 6.5E-09 72.9 10.7 84 139-231 219-309 (432)
483 PTZ00454 26S protease regulato 97.6 0.00016 3.4E-09 75.1 8.6 124 138-283 174-297 (398)
484 PF13173 AAA_14: AAA domain 97.6 0.00028 6E-09 61.2 8.7 39 143-182 2-40 (128)
485 PRK05703 flhF flagellar biosyn 97.6 0.00065 1.4E-08 71.1 13.0 85 141-233 219-311 (424)
486 KOG0062 ATPase component of AB 97.6 0.00014 2.9E-09 76.0 7.6 52 210-283 207-258 (582)
487 PRK06893 DNA replication initi 97.6 0.00054 1.2E-08 65.7 11.1 38 143-180 39-76 (229)
488 cd03285 ABC_MSH2_euk MutS2 hom 97.6 0.00027 5.9E-09 67.5 8.7 26 140-166 27-52 (222)
489 PRK07196 fliI flagellum-specif 97.6 4.3E-05 9.4E-10 79.6 3.4 48 122-172 136-183 (434)
490 PF00931 NB-ARC: NB-ARC domain 97.6 0.0003 6.4E-09 68.9 9.1 89 141-232 17-112 (287)
491 PRK06835 DNA replication prote 97.6 0.00036 7.7E-09 70.6 9.8 106 144-280 184-289 (329)
492 PRK14974 cell division protein 97.6 0.0018 3.9E-08 65.7 14.7 88 143-234 140-235 (336)
493 KOG2355 Predicted ABC-type tra 97.6 0.00029 6.2E-09 66.0 8.0 45 139-184 36-80 (291)
494 PRK14722 flhF flagellar biosyn 97.6 0.00049 1.1E-08 70.6 10.5 87 139-233 133-227 (374)
495 cd01131 PilT Pilus retraction 97.6 0.00065 1.4E-08 63.6 10.6 26 145-170 3-28 (198)
496 PF05621 TniB: Bacterial TniB 97.5 0.0012 2.6E-08 65.5 12.8 131 128-277 45-187 (302)
497 PRK08084 DNA replication initi 97.5 0.00057 1.2E-08 65.8 10.4 39 142-180 44-82 (235)
498 PF05729 NACHT: NACHT domain 97.5 0.00071 1.5E-08 60.0 10.2 123 144-280 1-130 (166)
499 PTZ00361 26 proteosome regulat 97.5 0.00052 1.1E-08 71.9 10.5 123 139-283 213-335 (438)
500 PRK13695 putative NTPase; Prov 97.5 0.00038 8.2E-09 63.5 8.4 29 145-173 2-30 (174)
No 1
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=100.00 E-value=4.8e-67 Score=517.95 Aligned_cols=320 Identities=57% Similarity=0.954 Sum_probs=292.9
Q ss_pred HHHHHHHHHHHhhcCCCCeeeccCCC-CCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567 93 RALDAAMNDINSSFGKGSVTRLGSAG-GALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL 170 (440)
Q Consensus 93 ~~l~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~ 170 (440)
++|+.++++|+++||++++|++++.. ...++.+|||++.||.+|+ ||+|+|++++|+||+|+|||||++++++++++.
T Consensus 1 ~~l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~ 80 (322)
T PF00154_consen 1 KALEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ 80 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc
Confidence 57899999999999999999998865 6678899999999999998 999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHH
Q 013567 171 GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGL 250 (440)
Q Consensus 171 ~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~ 250 (440)
+..|+|||.|+.+++.+++.+|++++++++.+|++.++.++.++++++++.+++|||||++++.|+.++++++++.+++.
T Consensus 81 g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~ 160 (322)
T PF00154_consen 81 GGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGL 160 (322)
T ss_dssp T-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSH
T ss_pred cceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEE
Q 013567 251 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRV 330 (440)
Q Consensus 251 ~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v 330 (440)
+||+|++++|+|...+.+.++++|+|||+|++++.+|+++++++||++|+||+++|++++|.+.+| ++++++|+++++
T Consensus 161 ~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~~~g~~~~t~GG~alkfyas~rl~i~k~~~ik--~~~~~iG~~~~v 238 (322)
T PF00154_consen 161 QARLMSQALRKLTPLLSKSNTTLIFINQVRDKIGVMFGNPETTPGGRALKFYASVRLEIRKKEQIK--EGDEVIGNKIKV 238 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSSSSSSSSSCCTSHHHHHHHCSEEEEEEEEEEEE--ETTCECEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHhhccCCCcCCCCCchhhhhhhhHHhhhcccccc--cCCcccccEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999898 677999999999
Q ss_pred EEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHHHH
Q 013567 331 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 410 (440)
Q Consensus 331 ~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~~~ 410 (440)
+|+|||++||++.++++|+|+.||+.+.+|+|+|+++|+|.|+|+||+|+++++|||++++++||++||++++||+++||
T Consensus 239 kv~KnKva~P~k~a~~~i~y~~Gid~~~~lldla~~~giI~ksG~wy~y~~e~~gqG~~~~~~~L~en~e~~~ei~~~ir 318 (322)
T PF00154_consen 239 KVVKNKVAPPFKKAEFDIYYGRGIDRESELLDLAVELGIIKKSGSWYSYNGEKIGQGRENAKKYLKENPELAEEIEQKIR 318 (322)
T ss_dssp EEEEESSS-TTEEEEEEEETTTEE-HHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEEcccCCCcceeEEEEecCCeECccchHHHHHHHcChhhccCceEEECCcEecccHHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 013567 411 SMMS 414 (440)
Q Consensus 411 ~~~~ 414 (440)
+++.
T Consensus 319 ~~~~ 322 (322)
T PF00154_consen 319 EKLN 322 (322)
T ss_dssp HHT-
T ss_pred HhcC
Confidence 9873
No 2
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=100.00 E-value=1.8e-66 Score=515.58 Aligned_cols=322 Identities=60% Similarity=1.008 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 91 RQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 91 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
+.++|+.++.+|+++||++++|++++.....++++|||++.||.+|+ ||||+|++++|+||||+||||||++++.++++
T Consensus 2 ~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~ 81 (325)
T cd00983 2 KQKALELALKQIEKKFGKGSIMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK 81 (325)
T ss_pred chHHHHHHHHHHHHHhCCcceEECccccccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999998777789999999999999999 99999999999999999999999999999999
Q ss_pred cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHH
Q 013567 170 LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG 249 (440)
Q Consensus 170 ~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~ 249 (440)
.++.|+|||+|+++++.+++.+|++.+++++.++.+.++++++++.+++++.+++|||||+++++++.++++++++.+.+
T Consensus 82 ~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~ 161 (325)
T cd00983 82 LGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVG 161 (325)
T ss_pred cCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEE
Q 013567 250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR 329 (440)
Q Consensus 250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~ 329 (440)
.++|.|++.+++|..+++++++|||+|||++++++.+|+++++++||++|+|+++.|+++++.+.+| ++++++|++++
T Consensus 162 ~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g~~e~~~GG~~L~~~ss~rl~lrk~~~~k--~~~~~~G~~~~ 239 (325)
T cd00983 162 LQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIK--DGDEVIGNRTK 239 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEccccccccccCCCccCCCchHHhhhcceEEEEEeecccc--cCCcccccEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 68889999999
Q ss_pred EEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHHH
Q 013567 330 VRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVV 409 (440)
Q Consensus 330 v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~~ 409 (440)
++|+|||++||++.++|+|+|++||+++++|+|+|+++|+|.|+|+||+|+++++|||++++++||++||++++||++++
T Consensus 240 ~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~~~~~~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~~~ 319 (325)
T cd00983 240 VKVVKNKVAPPFKTAEFDILFGEGISREGEIIDLAVELGIIKKSGSWYSYGDEKLGQGRENAKEYLKENPELADEIEKKV 319 (325)
T ss_pred EEEEecccCCCCCceEEEEEcCcccchhhhHHHHHHhCCcEEcCCCEEEECCceeccCHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 013567 410 RSMMS 414 (440)
Q Consensus 410 ~~~~~ 414 (440)
|+++.
T Consensus 320 ~~~~~ 324 (325)
T cd00983 320 REKLG 324 (325)
T ss_pred HHHhc
Confidence 98764
No 3
>PRK09354 recA recombinase A; Provisional
Probab=100.00 E-value=7.6e-66 Score=514.47 Aligned_cols=325 Identities=61% Similarity=1.001 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.++.++|+.++.+|+++||++++|++++.....++++|||++.||.+|+ ||||+|++++|+||+|+||||||++++.++
T Consensus 5 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~ 84 (349)
T PRK09354 5 EEKQKALEAALKQIEKQFGKGSIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA 84 (349)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceEcccccccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3788999999999999999999999998666678999999999999999 999999999999999999999999999999
Q ss_pred hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567 168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ 247 (440)
Q Consensus 168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q 247 (440)
++.++.|+|||+|+++++.+++.+|++++++++.++.+.++.+++++.+++++.+++|||||+++++++.++++++++.+
T Consensus 85 ~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~ 164 (349)
T PRK09354 85 QKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSH 164 (349)
T ss_pred HHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567 248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR 327 (440)
Q Consensus 248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~ 327 (440)
.+.++|.|++++++|..+++++++|+|+|||++++++.+|++++.+.||++++||+++|++++|...+| .+++.+|++
T Consensus 165 ~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig~~~g~pe~~~GG~aL~~~ss~rl~lrr~~~iK--~~~~~~G~~ 242 (349)
T PRK09354 165 VGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIK--DGDEVIGNR 242 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeeccccccCCCCcCCCchhhHhhheeeeEEecccccc--cCCceecce
Confidence 889999999999999999999999999999999999999999999999999999999999999998888 677889999
Q ss_pred EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567 328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK 407 (440)
Q Consensus 328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~ 407 (440)
++++++|||++||++.++|+|+|++||+++++|+|+|+++|+|.|+|+||+|+++++|||++++++||++||++++||++
T Consensus 243 ~r~~vvKnk~~~p~~~a~~~i~~~~Gi~~~~~~~d~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~ 322 (349)
T PRK09354 243 TKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPELADEIEK 322 (349)
T ss_pred EEEEEEecccCCCCCceEEEEEcCCccchhhhHHHHHHhCCcEEcccCEEEECCceecCcHHHHHHHHHhCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 013567 408 VVRSMMSD 415 (440)
Q Consensus 408 ~~~~~~~~ 415 (440)
++|+++..
T Consensus 323 ~~~~~~~~ 330 (349)
T PRK09354 323 KIREKLGL 330 (349)
T ss_pred HHHHHhcC
Confidence 99999864
No 4
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=100.00 E-value=1.3e-65 Score=509.27 Aligned_cols=319 Identities=62% Similarity=1.030 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 91 RQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 91 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
+.++|+.++.+|+++||++++|++++.....++++|||++.||.+|+ ||||+|++++|+||||+||||||++++.++++
T Consensus 2 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~ 81 (321)
T TIGR02012 2 KQKALEAALAQIEKQFGKGSIMRLGEKSVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK 81 (321)
T ss_pred hHHHHHHHHHHHHHHcCcceeEECcccccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999997766788999999999999999 99999999999999999999999999999999
Q ss_pred cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHH
Q 013567 170 LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG 249 (440)
Q Consensus 170 ~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~ 249 (440)
.++.|+|||+|+.+++.+++.+|++++++.+.++.+.++.++.++.+++++.+++|||||+++++++.++++++|+.+.+
T Consensus 82 ~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~ 161 (321)
T TIGR02012 82 AGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVG 161 (321)
T ss_pred cCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEE
Q 013567 250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVR 329 (440)
Q Consensus 250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~ 329 (440)
.++|.|++++++|..+++++|+|+|+|||+++.++.+|++++++.||++|+|+++.|++++|...+| .+++.+|++++
T Consensus 162 ~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g~~~~~~e~~~GG~aL~~~ss~r~~lrr~~~iK--~~~~~~g~~~~ 239 (321)
T TIGR02012 162 LQARLMSQALRKLTGALSKSNTTAIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQVK--QGEEVVGNRTK 239 (321)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEecceeccCcccCCCccCcCccHHHHHHhHhHhhhhhhccc--cCCceeccEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999998898 67788999999
Q ss_pred EEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHHH
Q 013567 330 VRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVV 409 (440)
Q Consensus 330 v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~~ 409 (440)
++|+|||++||++.++|+|+|++||+++++|+|+|+++|+|.|+|+||+|+++++|||++++++||++||++++||++++
T Consensus 240 ~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~~~~~~a~~~g~i~k~g~w~~~~~~~~~qg~~~~~~~l~~~~~~~~~~~~~~ 319 (321)
T TIGR02012 240 VKVVKNKVAPPFKEAEFDILYGEGISKLGEIIDLAVELDIIKKAGSWYSYGDEKLGQGRENAKAYLKENPELAQEIEKKV 319 (321)
T ss_pred EEEEECCCCCCCCceEEEEEcCCccchhhHHHHHHHhCCcEEcccCEEEECCcEecccHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 013567 410 RS 411 (440)
Q Consensus 410 ~~ 411 (440)
|+
T Consensus 320 ~~ 321 (321)
T TIGR02012 320 RE 321 (321)
T ss_pred hC
Confidence 74
No 5
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=100.00 E-value=1.2e-46 Score=406.87 Aligned_cols=223 Identities=60% Similarity=1.006 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 90 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
++.++|+.++.+|+++||++++|++++.....+.++|||++.||.+|+ ||||+|.+++|+|++|+||||||++++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~ 85 (790)
T PRK09519 6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ 85 (790)
T ss_pred HHHHHHHHHHHHHHHHhccchhcccccccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999999998877889999999999999998 8999999999999999999999999999999
Q ss_pred hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhH
Q 013567 169 KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQI 248 (440)
Q Consensus 169 ~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~ 248 (440)
+.++.|+||++|+++++.+++++|++++++.+.++.+.+++++.+..+++++.+++|||||+++++++.++++.+++.+.
T Consensus 86 ~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~ 165 (790)
T PRK09519 86 AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHV 165 (790)
T ss_pred HcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccH
Confidence 99999999999999999999999999999999999999999999999998899999999999999988899988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeec
Q 013567 249 GLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRST 312 (440)
Q Consensus 249 ~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~ 312 (440)
+.++|.++++|++|..+++++|+|||+|||++..++.+|++++.+.||++|+|++++||.++|.
T Consensus 166 ~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~~fg~p~~~~GG~~l~h~ss~Ri~lrk~ 229 (790)
T PRK09519 166 GLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRV 229 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecCCCcCCCCCcCCCCcccceeccEEEEeeec
Confidence 7889989999999999999999999999999999999999999999999999999999999973
No 6
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.6e-43 Score=341.11 Aligned_cols=269 Identities=53% Similarity=0.875 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeeecc-CCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 90 DRQRALDAAMNDINSSFGKGSVTRLG-SAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 90 ~~~~~l~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
+..++.+.++..+++.++.+.++..+ ......+..||||+..||.+||||+|.|.|++|+||+||||||+|+|++++++
T Consensus 6 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq 85 (279)
T COG0468 6 DEEKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQ 85 (279)
T ss_pred hhhhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhh
Confidence 46778888888899999988887663 33455688999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEcCCCCCChhhhhhhccc-ccceeecCCCCHHHHHHHHHHHHhcCC--cceEEEecccccCCchhhcccchh
Q 013567 169 KLGGNAMLVDAEHAFDPSYSKALGVD-VENLIVCQPDNGEMALEIADRMCRSGA--IDLICVDSVSALTPRAEIEGEIGM 245 (440)
Q Consensus 169 ~~~~~vv~id~E~~~~~~~a~~lGv~-~~~l~i~~~~~~ee~l~~i~~l~~~~~--~~lvVIDsl~~l~~~~el~~~~g~ 245 (440)
++++.|+|||+|+++++.+++.++.+ .+++++.++.+.++.+.+++.+.+... ++++||||++++++..+.. +
T Consensus 86 ~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~----d 161 (279)
T COG0468 86 KPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE----D 161 (279)
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcC----c
Confidence 99999999999999999999999999 999999999999999999999888777 9999999999999744433 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccc
Q 013567 246 QQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVG 325 (440)
Q Consensus 246 ~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G 325 (440)
...+.++|.|++.++.|..++++++++||++||++++++.+|++++.+.||++++|++++|+++++.+.+| ++ .|
T Consensus 162 ~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~~~----~~-~g 236 (279)
T COG0468 162 GHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLK----ED-VG 236 (279)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCcccCCcccCCCchHHHhhhheEEEEeeccccc----cc-cC
Confidence 56678899999999999999999999999999999999999999999999999999999999999988777 23 78
Q ss_pred eEEEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHc
Q 013567 326 VRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMM 367 (440)
Q Consensus 326 ~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~ 367 (440)
+++.++++|||..||++.++|+|+|+.|++...++.+.+.+.
T Consensus 237 ~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~~~~~~~~~~ 278 (279)
T COG0468 237 NKRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELIDLGVKQ 278 (279)
T ss_pred CeEEEEEEeCCCCCCCceeEEEeecCcccccccchhhhhhcc
Confidence 899999999999999999999999999999999999998764
No 7
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=100.00 E-value=2.8e-32 Score=271.76 Aligned_cols=265 Identities=22% Similarity=0.312 Sum_probs=202.5
Q ss_pred cccccccccccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEc
Q 013567 71 EFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFG 150 (440)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G 150 (440)
++......-+.+.-..+.++..++++.+.+.+...|..+..+. ..+....+++||++.||.+|+||+++|.+++|+|
T Consensus 27 ~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~---~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G 103 (313)
T TIGR02238 27 GVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEIS---QKRKKVLKITTGSQALDGILGGGIESMSITEVFG 103 (313)
T ss_pred HHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccHHHHH---HhhccCceeCCCCHHHHHHhCCCCcCCeEEEEEC
Confidence 3333333444445556677788888877777655555443211 1234567899999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHHHHHHHHH-
Q 013567 151 PESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEMALEIADR- 215 (440)
Q Consensus 151 ~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee~l~~i~~- 215 (440)
+||+|||+||++++...+.+ +++++|||+|+++.+. +++++|+++ +++.+.++.+.++..+.+..
T Consensus 104 ~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l 183 (313)
T TIGR02238 104 EFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEHQMELLDYL 183 (313)
T ss_pred CCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHHHHHHHHHHH
Confidence 99999999999999887643 5799999999998775 567788875 47788888888877765544
Q ss_pred --HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc--cc-CCc
Q 013567 216 --MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV--YY-GNP 290 (440)
Q Consensus 216 --l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~--~~-~~~ 290 (440)
.+.+.++++|||||+++++. .++.+. |+ ...+.+.+.+++..|..++++++++||++||++.+++. +| +++
T Consensus 184 ~~~i~~~~~~LvVIDSisal~r-~~~~~~-g~--~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~~~~~~~ 259 (313)
T TIGR02238 184 AAKFSEEPFRLLIVDSIMALFR-VDFSGR-GE--LSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADP 259 (313)
T ss_pred HHHhhccCCCEEEEEcchHhhh-hhccCc-cc--hHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCcccccCCCC
Confidence 34566899999999999984 555431 11 11223457888999999999999999999999988764 33 678
Q ss_pred eeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567 291 EVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS 355 (440)
Q Consensus 291 ~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~ 355 (440)
..|+||..|+|++++|++++|.. + ..+.++|+|++..|+ ..+.|.|. ..||.
T Consensus 260 ~~p~gG~~~~h~~~~Rl~l~k~~------~-----~~R~~~~~~sp~~p~-~~~~f~i~-~~Gi~ 311 (313)
T TIGR02238 260 KKPIGGHVLAHASTTRILLRKGR------G-----EERVAKLYDSPDMPE-AEASFQIT-EGGIA 311 (313)
T ss_pred ccCcchhhhhhheeEEEEEEecC------C-----CeEEEEEeeCCCCCC-eEEEEEEe-CCccc
Confidence 88999999999999999999742 2 246899999987766 57889998 78874
No 8
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=100.00 E-value=9.1e-32 Score=270.16 Aligned_cols=267 Identities=25% Similarity=0.331 Sum_probs=204.5
Q ss_pred ccccccccccccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEE
Q 013567 70 CEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIF 149 (440)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~ 149 (440)
.++.......+.+..+...++..++++.+.+.+...|..+..+.. ......+++||+++||.+|+|||+.|.+++|+
T Consensus 56 ~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~~~~~~~ta~~~~~---~~~~~~~isTG~~~LD~lLgGGi~~G~ItEI~ 132 (344)
T PLN03187 56 NGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLLNQGFITGSDALL---KRKSVVRITTGSQALDELLGGGIETRCITEAF 132 (344)
T ss_pred HHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhhcccCCcHHHHHh---hhccCceecCCcHhHHhhcCCCCCCCeEEEEe
Confidence 344444444455556666777888888888777665544432211 12356789999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHHHHHHHHH
Q 013567 150 GPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEMALEIADR 215 (440)
Q Consensus 150 G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee~l~~i~~ 215 (440)
|+||+|||+||++++...+.+ +++++|||+|+++.+. +++++|+++ +++.+.++.+.++....+..
T Consensus 133 G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~ 212 (344)
T PLN03187 133 GEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLG 212 (344)
T ss_pred cCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHHHHHHHH
Confidence 999999999999999887642 3689999999998885 566778875 57788888888876655443
Q ss_pred ---HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc--cccCCc
Q 013567 216 ---MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG--VYYGNP 290 (440)
Q Consensus 216 ---l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig--~~~~~~ 290 (440)
.+.+.++++|||||+++++ +.++.+. ++ ...+.+.+.++++.|+++++++|++||++||++.+++ .+++++
T Consensus 213 l~~~i~~~~~~LvVIDSital~-r~~~~~r-g~--l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~~ 288 (344)
T PLN03187 213 LAAKMAEEPFRLLIVDSVIALF-RVDFTGR-GE--LAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDP 288 (344)
T ss_pred HHHHHHhcCCCEEEEeCcHHhh-hccccCc-cc--hHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCCC
Confidence 4556789999999999998 4555432 11 1123345788899999999999999999999998775 356788
Q ss_pred eeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCccc
Q 013567 291 EVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSK 356 (440)
Q Consensus 291 ~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~ 356 (440)
..++||..|.|+++.|+++++.. |..+.++|+|++..|+ ..+.|.|. ..||..
T Consensus 289 ~~pagG~~~~h~~~~Rl~l~k~~-----------~~~R~~~v~ksp~lp~-~~~~f~It-~~GI~d 341 (344)
T PLN03187 289 KKPAGGHVLAHAATIRLMLRKGK-----------GEQRVCKVFDAPNLPE-AEAEFQIT-SGGIMD 341 (344)
T ss_pred CCCCCchhhheeeeEEEEEEcCC-----------CCeEEEEEEECCCCCC-ceEEEEEe-CCCccC
Confidence 89999999999999999998742 2346899999987654 56889998 788853
No 9
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=99.97 E-value=3.9e-30 Score=258.62 Aligned_cols=219 Identities=27% Similarity=0.412 Sum_probs=175.8
Q ss_pred CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhh
Q 013567 120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSK 189 (440)
Q Consensus 120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~ 189 (440)
....+++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+ +++|+|||+|+++.+. +++
T Consensus 100 ~~~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~ 179 (342)
T PLN03186 100 QEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAE 179 (342)
T ss_pred cCcceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999887632 3589999999998875 466
Q ss_pred hhcccc----cceeecCCCCHHHHHHHHH---HHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHH
Q 013567 190 ALGVDV----ENLIVCQPDNGEMALEIAD---RMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM 262 (440)
Q Consensus 190 ~lGv~~----~~l~i~~~~~~ee~l~~i~---~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L 262 (440)
++++++ +++.+..+.+.++....+. .++...++++|||||+++++ +.++.+. ++. ..+.+.+.+.++.|
T Consensus 180 ~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alf-r~~~~~~-g~l--~~r~~~L~~~l~~L 255 (342)
T PLN03186 180 RFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALY-RTEFSGR-GEL--SARQMHLGKFLRSL 255 (342)
T ss_pred HcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHH-HHHhcCC-ccH--HHHHHHHHHHHHHH
Confidence 778876 5777887877777655543 33556789999999999998 3555432 111 12233478889999
Q ss_pred HHHHHhcCCEEEEEecccccccc--ccCCce-eecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCC
Q 013567 263 SGNASKAGCTLIFLNQIRYKIGV--YYGNPE-VTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR 339 (440)
Q Consensus 263 ~~lak~~~~tVI~inhl~~~ig~--~~~~~~-~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~ 339 (440)
+.+++++|++||++||++.+++. +++++. .|+||.+|.|+++.|+++++.. |..+.+++.||+..|
T Consensus 256 ~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~-----------~~~R~~~v~ksp~~p 324 (342)
T PLN03186 256 QRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGR-----------GENRICKVISSPCLP 324 (342)
T ss_pred HHHHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecC-----------CCeEEEEEEECCCCC
Confidence 99999999999999999887764 566666 8999999999999999999742 234689999999887
Q ss_pred CCceEEEEEEeCCCcc
Q 013567 340 PYKQAEFEIIFGEGVS 355 (440)
Q Consensus 340 p~~~~~~~i~~~~Gi~ 355 (440)
+. .+.|.|. ..||.
T Consensus 325 ~~-e~~F~I~-~~Gi~ 338 (342)
T PLN03186 325 EA-EARFSIS-SEGVT 338 (342)
T ss_pred Ce-EEEEEEE-CCcee
Confidence 75 5899998 78885
No 10
>PTZ00035 Rad51 protein; Provisional
Probab=99.97 E-value=5.6e-30 Score=257.82 Aligned_cols=259 Identities=22% Similarity=0.321 Sum_probs=194.1
Q ss_pred cccccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcH
Q 013567 77 NGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGK 156 (440)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGK 156 (440)
..-+.+..+...++..++++.+.......|-.+..+. + ......+++||++.||.+|+|||++|++++|+|+||+||
T Consensus 55 ~~~L~~~~gis~~~~~~i~~~~~~~~~~~~~ta~~~~--~-~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGK 131 (337)
T PTZ00035 55 KKDLCNIKGISEAKVEKIKEAASKLVPMGFISATEYL--E-ARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGK 131 (337)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhcccCCCCHHHHH--H-hhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCch
Confidence 3334444555666666777666655443332222111 1 123567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh------cCCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHHHHHHHHH---HHhc
Q 013567 157 TTLALHAIAEVQK------LGGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEMALEIADR---MCRS 219 (440)
Q Consensus 157 TTLaL~li~~~~~------~~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee~l~~i~~---l~~~ 219 (440)
||||++++...+. .+++++|||+|+++.+. +++++++++ +|+.+.++.+.++..+.+.. .+.+
T Consensus 132 T~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~ 211 (337)
T PTZ00035 132 TQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAE 211 (337)
T ss_pred hHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhc
Confidence 9999999887763 36788999999988774 466677775 67788888888776665443 3446
Q ss_pred CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc---ccCCceeeccc
Q 013567 220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV---YYGNPEVTSGG 296 (440)
Q Consensus 220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~---~~~~~~~~~gG 296 (440)
..+++|||||+++++ +.++.++ ++ ...+.+.+.++++.|+.+++++|++||++||++.+++. +.+++..++||
T Consensus 212 ~~~~lvVIDSital~-r~~~~~~-~~--~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG 287 (337)
T PTZ00035 212 ERFALLIVDSATALF-RVDYSGR-GE--LAERQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGG 287 (337)
T ss_pred cCccEEEEECcHHhh-hhhccCc-cc--HHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEEecCCccccCCCCccCCch
Confidence 789999999999987 3555432 11 12334567889999999999999999999999987752 24677889999
Q ss_pred ceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567 297 IALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS 355 (440)
Q Consensus 297 ~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~ 355 (440)
.+|.|++++|+++++.. |..|.++|+|++..|+. .+.|.|. .+||.
T Consensus 288 ~~~~h~~~~Rl~l~k~~-----------~~~R~~~i~ksp~~p~~-~~~f~It-~~Gi~ 333 (337)
T PTZ00035 288 HIIAHASTTRLSLRKGR-----------GEQRICKIYDSPNLPES-EAVFAIS-EGGII 333 (337)
T ss_pred HHHHhheeEEEEEEecC-----------CCeeEEEEEECCCCCCe-eEEEEEe-CCccc
Confidence 99999999999999742 22467899999877664 5789998 78885
No 11
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=99.97 E-value=7.8e-30 Score=247.90 Aligned_cols=217 Identities=30% Similarity=0.479 Sum_probs=169.6
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChhh----hhhh
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPSY----SKAL 191 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~~----a~~l 191 (440)
...|+||++.||.+|+|||+.|.+++|+|+||+|||+||++++..++.+ +++++|||+|..+...+ ++++
T Consensus 17 ~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~ 96 (256)
T PF08423_consen 17 WSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERF 96 (256)
T ss_dssp S-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHT
T ss_pred CCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcc
Confidence 3579999999999999999999999999999999999999999988743 57899999999998863 4445
Q ss_pred ccc----ccceeecCCCCHHHHHHHHHH---HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHH
Q 013567 192 GVD----VENLIVCQPDNGEMALEIADR---MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG 264 (440)
Q Consensus 192 Gv~----~~~l~i~~~~~~ee~l~~i~~---l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~ 264 (440)
+.+ ++++.+....+.+++.+.+.. .+.+.++++|||||+++++ +.++.+. + ....+.+.+.++++.|+.
T Consensus 97 ~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf-r~e~~~~-~--~~~~R~~~L~~~~~~L~~ 172 (256)
T PF08423_consen 97 GLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF-RSEFSGR-G--DLAERQRMLARLARILKR 172 (256)
T ss_dssp TS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH-HHHSGST-T--THHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH-HHHHccc-h--hhHHHHHHHHHHHHHHHH
Confidence 554 367888888888777665544 3456789999999999998 4666532 1 122446678899999999
Q ss_pred HHHhcCCEEEEEeccccccccc---cCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC
Q 013567 265 NASKAGCTLIFLNQIRYKIGVY---YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY 341 (440)
Q Consensus 265 lak~~~~tVI~inhl~~~ig~~---~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~ 341 (440)
+|++++++||++||+..+++.. .++...|++|..|.|.++.|+.++|.. |..+.++|.|++..|+
T Consensus 173 lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~-----------~~~R~~~i~ksp~~p~- 240 (256)
T PF08423_consen 173 LARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGR-----------GSERVATIVKSPSLPE- 240 (256)
T ss_dssp HHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECS-----------TTEEEEEEEECSSSSS-
T ss_pred HHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCC-----------CCeEEEEEeECCCCCC-
Confidence 9999999999999999877642 345678999999999999999999742 2357899999987655
Q ss_pred ceEEEEEEeCCCcc
Q 013567 342 KQAEFEIIFGEGVS 355 (440)
Q Consensus 342 ~~~~~~i~~~~Gi~ 355 (440)
..+.|.|. ++||.
T Consensus 241 ~~~~f~It-~~Gi~ 253 (256)
T PF08423_consen 241 GSASFQIT-EDGIR 253 (256)
T ss_dssp EEEEEEEE-TTEEE
T ss_pred ceEEEEEe-CCCcc
Confidence 57889998 88885
No 12
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.97 E-value=5.3e-29 Score=236.90 Aligned_cols=205 Identities=42% Similarity=0.638 Sum_probs=167.3
Q ss_pred cccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC------CcEEEEcCCCCCChhhh----hhhccc
Q 013567 125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG------GNAMLVDAEHAFDPSYS----KALGVD 194 (440)
Q Consensus 125 i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~------~~vv~id~E~~~~~~~a----~~lGv~ 194 (440)
++||++.||.+|+||+++|++++|+|+||+|||+||++++...+.++ .+++||++|+.+++.+. +..+.+
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~ 80 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD 80 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999999999999999999999999988777 89999999998777533 333333
Q ss_pred ----ccceeecCCCCHHHHHHHHHHHHh---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q 013567 195 ----VENLIVCQPDNGEMALEIADRMCR---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNAS 267 (440)
Q Consensus 195 ----~~~l~i~~~~~~ee~l~~i~~l~~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak 267 (440)
.+++.+.++.+.+++...++.+.. ..++++|||||++.++. .+..+. .....+.+.+.++++.|+.+++
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~-~~~~~~---~~~~~~~~~l~~~~~~L~~~a~ 156 (226)
T cd01393 81 PEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR-KEFIGR---GMLAERARLLSQALRKLLRLAD 156 (226)
T ss_pred hhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhh-hhhcCC---chHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888777655 67899999999999984 332221 1123455678889999999999
Q ss_pred hcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC
Q 013567 268 KAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY 341 (440)
Q Consensus 268 ~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~ 341 (440)
+++++||++||.+..++.+++.+..+.+|..|.|.++.|+.+++.+. . .|.++.+.++|++..|+.
T Consensus 157 ~~~~~vi~tnq~~~~~~~~~~~~~~p~~G~~~~~~~~~ri~l~~~~~------~--~~~~r~~~~~k~~~~~~~ 222 (226)
T cd01393 157 KFNVAVVFTNQVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKGRG------I--IGERRIAKVVKSPALPEA 222 (226)
T ss_pred HhCcEEEEEEEEeeecccccCCCccccCchhhhCcccEEEEEEecCC------c--cCcEEEEEEEeCCCCCCc
Confidence 99999999999998887666677788999999999999999998531 1 245668999999966664
No 13
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.96 E-value=7.3e-29 Score=247.78 Aligned_cols=220 Identities=26% Similarity=0.447 Sum_probs=172.6
Q ss_pred CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhh
Q 013567 120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSK 189 (440)
Q Consensus 120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~ 189 (440)
....+++||++.||.+|+||+++|++++|+|+||+||||||++++.+++.+ ++.|+|||+|+.+.+. +++
T Consensus 73 ~~~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~ 152 (316)
T TIGR02239 73 QEVIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAE 152 (316)
T ss_pred cccceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999876532 2478999999987774 456
Q ss_pred hhcccc----cceeecCCCCHHHHHHHHHH---HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHH
Q 013567 190 ALGVDV----ENLIVCQPDNGEMALEIADR---MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM 262 (440)
Q Consensus 190 ~lGv~~----~~l~i~~~~~~ee~l~~i~~---l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L 262 (440)
++++++ +++.+....+.++....+.. ++...++++|||||+++++ +.++.+. ++ ...+.+.+.++++.|
T Consensus 153 ~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~-r~~~~~~-~~--~~~rq~~l~~~~~~L 228 (316)
T TIGR02239 153 RYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALY-RTDFSGR-GE--LSARQMHLARFLRSL 228 (316)
T ss_pred HcCCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHh-hhhcCCc-ch--HHHHHHHHHHHHHHH
Confidence 677775 45667666676665554443 3556789999999999997 3554432 11 112234467889999
Q ss_pred HHHHHhcCCEEEEEecccccccc---cc-CCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCC
Q 013567 263 SGNASKAGCTLIFLNQIRYKIGV---YY-GNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS 338 (440)
Q Consensus 263 ~~lak~~~~tVI~inhl~~~ig~---~~-~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~ 338 (440)
+.++++++++||++||++.+++. .+ +++..|+||..|.|+++.|+++++.. + ..|.++++||+..
T Consensus 229 ~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~------~-----~~R~~~v~ksp~~ 297 (316)
T TIGR02239 229 QRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGR------G-----EQRICKIYDSPCL 297 (316)
T ss_pred HHHHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecC------C-----CeEEEEEEECCCC
Confidence 99999999999999999987653 23 57889999999999999999999742 1 3468999999988
Q ss_pred CCCceEEEEEEeCCCccc
Q 013567 339 RPYKQAEFEIIFGEGVSK 356 (440)
Q Consensus 339 ~p~~~~~~~i~~~~Gi~~ 356 (440)
|+. .+.|.|. +.||..
T Consensus 298 p~~-~~~f~i~-~~Gi~~ 313 (316)
T TIGR02239 298 PES-EAMFAIY-EDGIGD 313 (316)
T ss_pred CCe-EEEEEEe-CCceec
Confidence 875 5889997 788853
No 14
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.96 E-value=3.1e-28 Score=243.15 Aligned_cols=218 Identities=28% Similarity=0.436 Sum_probs=172.2
Q ss_pred CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhh
Q 013567 120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSK 189 (440)
Q Consensus 120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~ 189 (440)
..+..++||++.||.+|+||++.|.+++|+|+||+||||||++++.+++.+ ++.++|||+|+++.+. +++
T Consensus 72 ~s~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 72 KTIGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred ccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999988742 4589999999988775 345
Q ss_pred hhcccc----cceeecCCCCHHHH---HHHHHHHHhcC--CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHH
Q 013567 190 ALGVDV----ENLIVCQPDNGEMA---LEIADRMCRSG--AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALR 260 (440)
Q Consensus 190 ~lGv~~----~~l~i~~~~~~ee~---l~~i~~l~~~~--~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~ 260 (440)
.+|++. +++.+..+.+.++. ++.+..++.+. .+++|||||+++++ +.++.+. ++ ...+.+.+.+.+.
T Consensus 152 ~~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~-r~e~~~~-~~--~~~r~~~l~~~~~ 227 (310)
T TIGR02236 152 ARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHF-RAEYVGR-GA--LAERQQKLNKHLH 227 (310)
T ss_pred HcCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhh-hHhhcCc-hh--HHHHHHHHHHHHH
Confidence 567764 56777776655442 33344455544 48899999999987 3555442 11 1223455778889
Q ss_pred HHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP 340 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p 340 (440)
.|+.+++++++|||++||++++++..++++..++||.+|.|++++|+.+++.. |..+.+++.||+..|+
T Consensus 228 ~L~~~a~~~~~~v~~tnqv~~~~~~~~~~~~~~~~G~~~~h~~~~rl~l~~~~-----------~~~R~~~~~k~~~~~~ 296 (310)
T TIGR02236 228 DLLRLADLYNAAVVVTNQVMARPDAFFGDPTRPIGGHILGHAATFRVYLRKGK-----------GDKRIARLVDSPHLPE 296 (310)
T ss_pred HHHHHHHHhCcEEEEeceeeecCccccCccccCCcchhhhhheeEEEEEEecC-----------CCeEEEEEEECCCCCC
Confidence 99999999999999999999988777888889999999999999999999741 2246899999998887
Q ss_pred CceEEEEEEeCCCc
Q 013567 341 YKQAEFEIIFGEGV 354 (440)
Q Consensus 341 ~~~~~~~i~~~~Gi 354 (440)
.. +.|.|. +.||
T Consensus 297 ~~-~~f~i~-~~Gi 308 (310)
T TIGR02236 297 GE-AVFRIT-EKGI 308 (310)
T ss_pred ee-EEEEEe-CCCc
Confidence 64 469887 7776
No 15
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.96 E-value=5.4e-28 Score=230.31 Aligned_cols=213 Identities=27% Similarity=0.445 Sum_probs=165.2
Q ss_pred cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcc-----cccc
Q 013567 123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGV-----DVEN 197 (440)
Q Consensus 123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv-----~~~~ 197 (440)
+++|||+++||.+|+||+++|++++|+|+||+|||+||++++.+.++.+.+|+||++| .+...+..++.- ..++
T Consensus 3 ~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~~ 81 (225)
T PRK09361 3 ERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLSN 81 (225)
T ss_pred ccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhhC
Confidence 3699999999999999999999999999999999999999999999999999999999 555443332211 2356
Q ss_pred eeecCCCCHHHHHHHHHH---HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEE
Q 013567 198 LIVCQPDNGEMALEIADR---MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLI 274 (440)
Q Consensus 198 l~i~~~~~~ee~l~~i~~---l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI 274 (440)
+.+.++.+.++..+.++. ++. .+++++||||+++++. .++.++.. ...+.+.+.+.++.|+.+++++|++||
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~-~~~~~~~~---~~~~~~~l~~~l~~L~~~a~~~~v~vi 156 (225)
T PRK09361 82 IIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYR-LELEDEED---NSKLNRELGRQLTHLLKLARKHDLAVV 156 (225)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhH-HHhcCCcc---HHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 778888777665444433 333 6799999999999874 33322111 113355678888889999999999999
Q ss_pred EEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCc
Q 013567 275 FLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV 354 (440)
Q Consensus 275 ~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi 354 (440)
++||.....+. ....+.||..|+|+++.++.+++. . ++.+++.+.|++..|+...+.|+|. +.||
T Consensus 157 ~tnq~~~~~~~---~~~~~~gg~~~~~~~d~ii~l~~~------~-----~~~r~~~i~k~~~~~~~~~~~f~It-~~Gi 221 (225)
T PRK09361 157 ITNQVYSDIDS---DGLRPLGGHTLEHWSKTILRLEKF------R-----NGKRRATLEKHRSRPEGESAEFRIT-DRGI 221 (225)
T ss_pred EEccceecCCC---CcccCCCcchhhhhccEEEEEEEc------c-----CCeEEEEEEECCCCCCCCeEEEEEe-CCcE
Confidence 99999876553 245567899999999999999872 1 2335678999998888889999998 8898
Q ss_pred cc
Q 013567 355 SK 356 (440)
Q Consensus 355 ~~ 356 (440)
..
T Consensus 222 ~~ 223 (225)
T PRK09361 222 EI 223 (225)
T ss_pred ec
Confidence 53
No 16
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.96 E-value=7.7e-28 Score=241.11 Aligned_cols=219 Identities=29% Similarity=0.437 Sum_probs=173.5
Q ss_pred CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh----hhh
Q 013567 120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSK 189 (440)
Q Consensus 120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~----~a~ 189 (440)
..+..++||++.||.+|+||||+|.+++|+|+||+|||+||++++.+++.+ +.+++||++|+++.+. +++
T Consensus 79 ks~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~ 158 (317)
T PRK04301 79 KNVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE 158 (317)
T ss_pred ccCCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHH
Confidence 346689999999999999999999999999999999999999999988754 3589999999988764 455
Q ss_pred hhcccc----cceeecCCCCHHHH---HHHHHHHHhc-CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHH
Q 013567 190 ALGVDV----ENLIVCQPDNGEMA---LEIADRMCRS-GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRK 261 (440)
Q Consensus 190 ~lGv~~----~~l~i~~~~~~ee~---l~~i~~l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~ 261 (440)
++|+++ +++++.++.+.++. +..+..++.+ .++++|||||+++++ +.++.++ ++ ...+.+.+.+.+..
T Consensus 159 ~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~-~~~~~~~-~~--~~~r~~~l~~~~~~ 234 (317)
T PRK04301 159 ALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHF-RAEYVGR-GN--LAERQQKLNKHLHD 234 (317)
T ss_pred HcCCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHh-hhhccCC-cc--HHHHHHHHHHHHHH
Confidence 678776 45667766655443 3445555555 689999999999987 3444432 11 11223446778888
Q ss_pred HHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY 341 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~ 341 (440)
|..+++++++|||++||+.++.+.+++++..++||..|.|+++.|+++++.. + ..+.++++|++..|+.
T Consensus 235 L~~la~~~~vavl~tnqv~~~~~~~~~~~~~~~~G~~~~~~~~~rl~l~k~~------~-----~~R~~~v~k~~~~~~~ 303 (317)
T PRK04301 235 LLRLADLYNAAVVVTNQVMARPDAFFGDPTQPIGGHILGHTATFRIYLRKSK------G-----NKRIARLVDSPHLPEG 303 (317)
T ss_pred HHHHHHHhCCEEEEeceEEeccccccCccccCCcchHhHhheeEEEEEEecC------C-----CceEEEEEeCCCCCCc
Confidence 9999999999999999999888777888889999999999999999999741 1 2468999999988765
Q ss_pred ceEEEEEEeCCCcc
Q 013567 342 KQAEFEIIFGEGVS 355 (440)
Q Consensus 342 ~~~~~~i~~~~Gi~ 355 (440)
.+.|.|. ..||.
T Consensus 304 -~~~f~I~-~~Gi~ 315 (317)
T PRK04301 304 -EAVFRIT-EEGIR 315 (317)
T ss_pred -eEEEEEe-CCccc
Confidence 5689997 77873
No 17
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.96 E-value=1.8e-27 Score=227.72 Aligned_cols=213 Identities=29% Similarity=0.444 Sum_probs=165.2
Q ss_pred cccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC------CcEEEEcCCCCCChh----hhhhhccc
Q 013567 125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG------GNAMLVDAEHAFDPS----YSKALGVD 194 (440)
Q Consensus 125 i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~------~~vv~id~E~~~~~~----~a~~lGv~ 194 (440)
+|||+++||.+|+||+++|++++|+|+||+|||+||++++...+.++ .+++||++|+.+... .++.++++
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence 58999999999999999999999999999999999999998876553 899999999977654 34445554
Q ss_pred c----cceeecCCCCHHHHHHH---HHHHHhcC-CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013567 195 V----ENLIVCQPDNGEMALEI---ADRMCRSG-AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA 266 (440)
Q Consensus 195 ~----~~l~i~~~~~~ee~l~~---i~~l~~~~-~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~la 266 (440)
+ +++.+.++.+.+++... +...+.+. ++++|||||++.++. .++.+. .....+.+.+.++++.|+.++
T Consensus 81 ~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~-~~~~~~---~~~~~r~~~l~~~~~~L~~la 156 (235)
T cd01123 81 PEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR-AEFDGR---GELAERQQHLAKLLRTLKRLA 156 (235)
T ss_pred hHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH-HHhcCC---ccHHHHHHHHHHHHHHHHHHH
Confidence 3 56777777776665543 44445556 899999999999863 333221 111234566889999999999
Q ss_pred HhcCCEEEEEeccccccccc---cCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCce
Q 013567 267 SKAGCTLIFLNQIRYKIGVY---YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQ 343 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~---~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~ 343 (440)
++++++||++||.....+.. .+....+++|..|.+.++.|+++.+.. +..+.++|+|++..| ...
T Consensus 157 ~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~-----------~~~r~~~i~k~~~~~-~~~ 224 (235)
T cd01123 157 DEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGR-----------GEERIAKIVDSPHLP-EGE 224 (235)
T ss_pred HHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECC-----------CCceEEEEeeCCCCC-Cce
Confidence 99999999999998765432 344567889999999999999998742 123689999998776 457
Q ss_pred EEEEEEeCCCc
Q 013567 344 AEFEIIFGEGV 354 (440)
Q Consensus 344 ~~~~i~~~~Gi 354 (440)
..|+|. +.||
T Consensus 225 ~~f~It-~~Gi 234 (235)
T cd01123 225 AVFAIT-EEGI 234 (235)
T ss_pred EEEEEe-CCcc
Confidence 889998 7786
No 18
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.95 E-value=5.4e-27 Score=222.28 Aligned_cols=210 Identities=23% Similarity=0.376 Sum_probs=159.9
Q ss_pred cccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcc----cccceee
Q 013567 125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGV----DVENLIV 200 (440)
Q Consensus 125 i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv----~~~~l~i 200 (440)
+|||+++||.+|+|||++|++++|+|+||+||||||++++...++.+.+++||++|..+...+.+..+. ...++.+
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~ 80 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIV 80 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEE
Confidence 689999999999999999999999999999999999999999998899999999998776433222221 2356777
Q ss_pred cCCCCHHHHHHH---HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Q 013567 201 CQPDNGEMALEI---ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLN 277 (440)
Q Consensus 201 ~~~~~~ee~l~~---i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~in 277 (440)
.++.+.++.... +..++. .++++|||||+++++. .+..+... ...+.+.+.+.++.|+.++++++++||++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~lvvIDsi~~l~~-~~~~~~~~---~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~ 155 (218)
T cd01394 81 FEPMDFNEQGRAIQETETFAD-EKVDLVVVDSATALYR-LELGDDDT---TIKNYRELAKQLTFLLWLARKHDVAVVITN 155 (218)
T ss_pred EeCCCHHHHHHHHHHHHHHHh-cCCcEEEEechHHhhh-HHhcCccc---hHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 777766555443 333333 3489999999999863 33332111 123455678888899999999999999999
Q ss_pred ccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCc
Q 013567 278 QIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV 354 (440)
Q Consensus 278 hl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi 354 (440)
|+....+. ....+.||..|.|+++.++.+++.. + ..++..+.|++..++...+.|.|. +.||
T Consensus 156 q~~~~~~~---~~~~p~~g~~~~~~~d~~i~l~~~~------~-----~~r~~~~~~~~~~~~~~~~~f~It-~~Gi 217 (218)
T cd01394 156 QVYSDVGS---GSVRPLGGHTLEHWSKVILRLEKLR------V-----GTRRAVLEKHRFRPEGSSVYFRIT-DKGI 217 (218)
T ss_pred CCEEcCCC---CcccccCCcchhcceeEEEEEEEcC------C-----CeEEEEEeeCCCCCCCceEEEEEe-CCcc
Confidence 99876552 3455779999999999999999752 1 123445778888888788999998 7887
No 19
>PRK06321 replicative DNA helicase; Provisional
Probab=99.94 E-value=1.2e-25 Score=235.32 Aligned_cols=297 Identities=12% Similarity=0.116 Sum_probs=212.0
Q ss_pred cccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC---------
Q 013567 48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS--------- 116 (440)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~--------- 116 (440)
...++.+|...||.+|++++.+|+++..+.+.... +.+.+..+..+.++..+.+|.....+.....+.+
T Consensus 100 ~~~~s~~ni~~Ya~iV~e~~~~R~li~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 179 (472)
T PRK06321 100 EFAGTSAYIEEYAEIIRSKSILRKMIQTAKEIEKKALEEPKDVATALDEAQNLLFKISQTTNLAQYVLVADKLKGLTSSK 179 (472)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhccCCCCceEHHHHHhhhhcch
Confidence 34567799999999999999999999999888765 2234566666666666666655432222211111
Q ss_pred ---------------------CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcE
Q 013567 117 ---------------------AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNA 174 (440)
Q Consensus 117 ---------------------~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~v 174 (440)
.......+||||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++ +.+.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~tG~~~LD~~t-~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v 258 (472)
T PRK06321 180 DKPFLLQLQERQEAFQQSAQGDSSPMISGIPTHFIDLDKMI-NGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPV 258 (472)
T ss_pred hhhHHHHHHHHHHHHhhhhccccCCCCCccccCcHHHHHHh-cCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeE
Confidence 11223568999999999999 7999999999999999999999999999887 457889
Q ss_pred EEEcCCCCCChhhhhhh----cccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcCCcc
Q 013567 175 MLVDAEHAFDPSYSKAL----GVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSGAID 223 (440)
Q Consensus 175 v~id~E~~~~~~~a~~l----Gv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~~~~ 223 (440)
+||+.||+..+...+.+ +++. .++++.+ ..+.+++...++.+.++.+++
T Consensus 259 ~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~ 338 (472)
T PRK06321 259 GIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQ 338 (472)
T ss_pred EEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999998776532221 2222 1233432 246888999999888888899
Q ss_pred eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Ccee--ecccceee
Q 013567 224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPEV--TSGGIALK 300 (440)
Q Consensus 224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~~--~~gG~~l~ 300 (440)
+||||+++.+........ ...+..++..+.+.|+.+|++++++||+++|+.+.+..-.+ .|.. ..++.++.
T Consensus 339 lvvIDyLql~~~~~~~~~------~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IE 412 (472)
T PRK06321 339 FLIIDYLQLLSGSGNLRN------SESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIE 412 (472)
T ss_pred EEEEcchHHcCCCCccCC------cchHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhccccc
Confidence 999999998753111100 11344568899999999999999999999999877653221 2322 45788999
Q ss_pred eeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567 301 FFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 301 ~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~ 358 (440)
..+++.+++.|.+.... ++.. ....+.|.|||..|.. .+.+.|.....+..
T Consensus 413 qdAD~v~~l~R~~~y~~---~~~~-~~~elivaKnR~G~~G---~v~l~f~~~~~~f~ 463 (472)
T PRK06321 413 QDSDLVMFLLRREYYDP---NDKP-GTAELIVAKNRHGSIG---SVPLVFEKEFARFR 463 (472)
T ss_pred ccCCEEEEEechhhcCC---cCCC-CceEEEEEecCCCCCc---eEEEEEecCCCccc
Confidence 99999999988654431 1111 2468999999987764 55666666665444
No 20
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.94 E-value=2.2e-25 Score=231.56 Aligned_cols=280 Identities=19% Similarity=0.158 Sum_probs=201.1
Q ss_pred cccccccchhhHHHHhhcccccccccccccccccC--CCC-ccHHHHHHHHHHHHHHHH--hhcCCCCeeecc-------
Q 013567 48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGD-SRFLDRQRALDAAMNDIN--SSFGKGSVTRLG------- 115 (440)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~l~~~~~~i~--~~~~~~~~~~~~------- 115 (440)
...++.+|...||.+|++++.+|+++..+..+... +.+ .+.++..+.++..+.++. ..........+.
T Consensus 82 ~~~~s~~ni~~Ya~~v~e~~~~R~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
T TIGR03600 82 NNTPSAANISSYARIVREKAKERKLIAACQRIIDLACSDGGQTAEQKVEEAQAALLALTGMSDGQERGFVTFGEVLEDVV 161 (421)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhccCcCCchhHHHHHHHHH
Confidence 34566789999999999999999998888877765 222 255666666666666665 322221111111
Q ss_pred ----C--CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhh
Q 013567 116 ----S--AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYS 188 (440)
Q Consensus 116 ----~--~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a 188 (440)
+ .......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++ +.+.+++||+.|++..+...
T Consensus 162 ~~~~~~~~~~~~~~gi~tG~~~LD~~~-~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 162 RDLDKRFNPKGELTGLSTGLPKLDRLT-NGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred HHHHHHhcCCCCCcceeCCChhHHHHh-cCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 1 01223578999999999999 6999999999999999999999999998886 67889999999998776522
Q ss_pred ----hhhccccc-------------------------ceeecCC--CCHHHHHHHHHHHHhcC-CcceEEEecccccCCc
Q 013567 189 ----KALGVDVE-------------------------NLIVCQP--DNGEMALEIADRMCRSG-AIDLICVDSVSALTPR 236 (440)
Q Consensus 189 ----~~lGv~~~-------------------------~l~i~~~--~~~ee~l~~i~~l~~~~-~~~lvVIDsl~~l~~~ 236 (440)
...|++.. ++++.+. .+.+++...++++.... ++++||||+++.+.+.
T Consensus 241 Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~ 320 (421)
T TIGR03600 241 RLLASKSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT 320 (421)
T ss_pred HHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC
Confidence 22343321 3444443 56888888888876655 7999999999998641
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc-CCce--eecccceeeeeceEEEEEeecc
Q 013567 237 AEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY-GNPE--VTSGGIALKFFASVRLEIRSTG 313 (440)
Q Consensus 237 ~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~-~~~~--~~~gG~~l~~~a~~rl~l~r~~ 313 (440)
. +. .+...+..+.+.|+.+|++++++||+++|+++....-- ..|. ...++..+.+.+++.+++.|..
T Consensus 321 ---~---~~----~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~ 390 (421)
T TIGR03600 321 ---R---GR----DRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREG 390 (421)
T ss_pred ---C---CC----CHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEecccc
Confidence 1 11 12345788999999999999999999999987654321 1232 2458889999999999999876
Q ss_pred cccccCCCcccceEEEEEEeeccCCCCC
Q 013567 314 KIKSVKGDEDVGVRVRVRVQKSKVSRPY 341 (440)
Q Consensus 314 ~ik~~~g~~~~G~~~~v~v~Knr~~~p~ 341 (440)
.... ++..- ....+.|.|||..|.+
T Consensus 391 ~~~~--~~~~~-~~~el~v~K~R~G~~g 415 (421)
T TIGR03600 391 YYDA--REPPA-GVAELILAKNRHGPTG 415 (421)
T ss_pred ccCC--ccCCC-CceEEEEECCCCCCCc
Confidence 5431 11111 2468999999976654
No 21
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-25 Score=221.97 Aligned_cols=221 Identities=22% Similarity=0.288 Sum_probs=184.3
Q ss_pred eeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhh
Q 013567 112 TRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSK 189 (440)
Q Consensus 112 ~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~ 189 (440)
..+.+.......+++||+.+||++||||+-+|.++.|.|.||.|||||.||+++.+++.+ +++|+++|++..+. ++.
T Consensus 62 ~~l~~i~~~~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~ 140 (456)
T COG1066 62 LKLSDIELEEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRAD 140 (456)
T ss_pred eeeccceeeecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHH
Confidence 344455555678999999999999999999999999999999999999999999999877 99999999999986 788
Q ss_pred hhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 013567 190 ALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269 (440)
Q Consensus 190 ~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~ 269 (440)
++|+..+++++....+.++++..+++ .+++++||||++.++. .+++..+|.. .|.|+. ...|.+++|+.
T Consensus 141 RL~~~~~~l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~s-~~~~SapGsV---sQVRe~---t~~L~~~AK~~ 209 (456)
T COG1066 141 RLGLPTNNLYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLYS-EEITSAPGSV---SQVREV---AAELMRLAKTK 209 (456)
T ss_pred HhCCCccceEEehhcCHHHHHHHHHh----cCCCEEEEeccceeec-ccccCCCCcH---HHHHHH---HHHHHHHHHHc
Confidence 99999999999999999999888776 4799999999999995 7777666653 555554 45568889999
Q ss_pred CCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEE
Q 013567 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEII 349 (440)
Q Consensus 270 ~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~ 349 (440)
|++++++-|++++ -.++|.+.++|..|+.++++- +. ..+.+-++.+|||+.+......|++.
T Consensus 210 ~i~~fiVGHVTKe--------G~IAGPrvLEHmVDtVlyFEG---------d~-~~~~RiLR~vKNRFG~t~EiGvFeM~ 271 (456)
T COG1066 210 NIAIFIVGHVTKE--------GAIAGPRVLEHMVDTVLYFEG---------DR-HSRYRILRSVKNRFGATNELGVFEMT 271 (456)
T ss_pred CCeEEEEEEEccc--------ccccCchheeeeeeEEEEEec---------cC-CCceeeeehhcccCCcccceeEEEEe
Confidence 9999999999863 236889999999999999964 21 12345779999999999989999997
Q ss_pred eCCCcccchhhhhH
Q 013567 350 FGEGVSKLGCMLDC 363 (440)
Q Consensus 350 ~~~Gi~~~~~i~~~ 363 (440)
++|+....+-..+
T Consensus 272 -~~GL~eV~npS~l 284 (456)
T COG1066 272 -ENGLREVSNPSAL 284 (456)
T ss_pred -cCCeeEecCcHHh
Confidence 8888655444333
No 22
>PRK05595 replicative DNA helicase; Provisional
Probab=99.93 E-value=4.2e-25 Score=230.92 Aligned_cols=295 Identities=16% Similarity=0.138 Sum_probs=209.6
Q ss_pred cccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC---------
Q 013567 48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS--------- 116 (440)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~--------- 116 (440)
...+.++|...||++|++++.+|+++..+...... +.+.+.++..+.++..+.++......+....+++
T Consensus 92 ~~~~s~~ni~~Ya~iVke~~~~R~l~~~~~~~~~~~~~~~~~~~~~l~~~e~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 171 (444)
T PRK05595 92 NSIVSTANIQSYIKIVKDKSTLRRLIKSSTEIIENSYNNQDDVEKVIDSAEKKIFDISEKRTTSDFEPLSNVLERGFEQI 171 (444)
T ss_pred HcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccCCccceeHHHHHHHHHHHH
Confidence 34667789999999999999999998887766654 2223555666666666666655443332211111
Q ss_pred ----CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhh----
Q 013567 117 ----AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSY---- 187 (440)
Q Consensus 117 ----~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~---- 187 (440)
.......++|||++.||.++ ||+.+|+++.|.|+||+|||+|+++++.+++ +.+.+|+||+.||+..+..
T Consensus 172 ~~~~~~~~~~~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~ 250 (444)
T PRK05595 172 ENLFNNKGETTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLL 250 (444)
T ss_pred HHHHhCCCCCCcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHH
Confidence 01224568999999999998 8999999999999999999999999998865 5688999999999876642
Q ss_pred hhhhcccc-------------------------cceeecCC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhc
Q 013567 188 SKALGVDV-------------------------ENLIVCQP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE 240 (440)
Q Consensus 188 a~~lGv~~-------------------------~~l~i~~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~ 240 (440)
+...+++. .++++.+. .+.+++...++++....++++||||+++.+.....
T Consensus 251 a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~-- 328 (444)
T PRK05595 251 CSEANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKG-- 328 (444)
T ss_pred HHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCC--
Confidence 22223332 13444333 46788888888887778899999999998753111
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceeeeeceEEEEEeecccccc
Q 013567 241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALKFFASVRLEIRSTGKIKS 317 (440)
Q Consensus 241 ~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~~~a~~rl~l~r~~~ik~ 317 (440)
. ..+..++..+.+.|+.+|++++|+||+++|+++.+..-.+ .|. ...++..+...+++.+++.|.+....
T Consensus 329 ---~----~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~~~~ 401 (444)
T PRK05595 329 ---S----ESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEYYNK 401 (444)
T ss_pred ---C----ccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEeccccccc
Confidence 0 1234568899999999999999999999999886643211 222 34578899999999999998654431
Q ss_pred cCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567 318 VKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 318 ~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~ 358 (440)
+ .+.. ....+.|.|||..|.+ .+.+.|.....+..
T Consensus 402 -~-~~~~-~~~e~iv~K~R~G~~g---~~~~~~~~~~~~f~ 436 (444)
T PRK05595 402 -E-TEDK-NVAECIIAKQRNGPTG---TVKLAWLGQYSKFG 436 (444)
T ss_pred -c-cCCC-CceEEEEEccCCCCCc---eEEEEEecCCCccc
Confidence 1 1111 2368999999987665 56666666665444
No 23
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.93 E-value=6.1e-25 Score=206.76 Aligned_cols=200 Identities=23% Similarity=0.375 Sum_probs=154.3
Q ss_pred HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhh-----cccccceeecCCCCH
Q 013567 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL-----GVDVENLIVCQPDNG 206 (440)
Q Consensus 132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~l-----Gv~~~~l~i~~~~~~ 206 (440)
||.+|+||+|+|++++|+||||+|||+||++++.+.++.+.+++||++|+ +.+.+...+ ....+++.+.++.+.
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~ 79 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDF 79 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCH
Confidence 79999999999999999999999999999999999998899999999997 544422221 223477788877766
Q ss_pred HHH---HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 207 EMA---LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 207 ee~---l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
.+. +..+..++.+..+++|||||+++++. .+.+++.. .+.+.+.+.+..|..+++++++++|++||.+...
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~-~~~~~~~~-----~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~ 153 (209)
T TIGR02237 80 DEQGVAIQKTSKFIDRDSASLVVVDSFTALYR-LELSDDRI-----SRNRELARQLTLLLSLARKKNLAVVITNQVYTDV 153 (209)
T ss_pred HHHHHHHHHHHHHHhhcCccEEEEeCcHHHhH-HHhCCccH-----HHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEec
Confidence 555 44444555666899999999999873 33332211 2344566777889999999999999999998655
Q ss_pred ccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCc
Q 013567 284 GVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV 354 (440)
Q Consensus 284 g~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi 354 (440)
+. ....+.||..|.|+++.++.+++.. + .+++.+.|++..++...+.|.|. +.||
T Consensus 154 ~~---~~~~~~gg~~~~~~~d~vi~l~~~~-----------~-~r~~~i~k~~~~~~~~~~~f~It-~~Gi 208 (209)
T TIGR02237 154 NN---GTLRPLGGHLLEHWSKVILRLEKFR-----------G-RRLATLEKHRSRPEGESVYFRIT-DDGI 208 (209)
T ss_pred CC---CCCcCCCcchhheeeeEEEEEEecC-----------C-EEEEEEEECCCCCCCCeEEEEEe-CCcc
Confidence 42 2346789999999999999998631 2 24667899888888888999998 7787
No 24
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.93 E-value=4.4e-25 Score=224.71 Aligned_cols=214 Identities=23% Similarity=0.316 Sum_probs=170.5
Q ss_pred eccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhh
Q 013567 113 RLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKA 190 (440)
Q Consensus 113 ~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~ 190 (440)
++.+......++++||+++||++|+|||++|+++.|.|+||+|||||+++++....+.+.+++|+++|++.++. ++++
T Consensus 52 ~~~~~~~~~~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~r 131 (372)
T cd01121 52 PLSDIEAEEEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADR 131 (372)
T ss_pred EhhhccccccCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHH
Confidence 33343344567899999999999999999999999999999999999999999998888899999999987764 5678
Q ss_pred hcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 013567 191 LGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAG 270 (440)
Q Consensus 191 lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~ 270 (440)
+|++.+++.+....+.+++.+.++ ..+++++||||++.++. .+.++.+|.. .| +++.+..|.+++++++
T Consensus 132 lg~~~~~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~q---vr~~~~~L~~lak~~~ 200 (372)
T cd01121 132 LGISTENLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVYS-SELTSAPGSV---SQ---VRECTAELMRFAKERN 200 (372)
T ss_pred cCCCcccEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhhc-cccccCCCCH---HH---HHHHHHHHHHHHHHcC
Confidence 999999998887777777766654 35799999999999873 3333222321 12 4566778899999999
Q ss_pred CEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEe
Q 013567 271 CTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIF 350 (440)
Q Consensus 271 ~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~ 350 (440)
+|+|+++|+.++- ..+|.+.+.|.+|.++.++... . ...+.++++|||..+......|+|.
T Consensus 201 itvilvghvtk~g--------~~aG~~~leh~vD~Vi~le~~~-------~---~~~R~Lri~KnR~g~~~ei~~F~i~- 261 (372)
T cd01121 201 IPIFIVGHVTKEG--------SIAGPKVLEHMVDTVLYFEGDR-------H---SEYRILRSVKNRFGSTNELGVFEMR- 261 (372)
T ss_pred CeEEEEeeccCCC--------cccCcccchhhceEEEEEEcCC-------C---CcEEEEEEEeCCCCCCCCEEEEEEC-
Confidence 9999999987531 1456788999999999887531 1 1346789999999988888899998
Q ss_pred CCCccc
Q 013567 351 GEGVSK 356 (440)
Q Consensus 351 ~~Gi~~ 356 (440)
++|+..
T Consensus 262 ~~Gl~~ 267 (372)
T cd01121 262 ENGLRE 267 (372)
T ss_pred CCCeEE
Confidence 899964
No 25
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.93 E-value=4e-25 Score=230.74 Aligned_cols=214 Identities=21% Similarity=0.272 Sum_probs=170.4
Q ss_pred eccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhh
Q 013567 113 RLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKA 190 (440)
Q Consensus 113 ~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~ 190 (440)
++.+.......+++||+++||++|+|||++|++++|.|+||+|||||+++++..+.+.+.+++|+++|++..+. ++++
T Consensus 64 ~~~~~~~~~~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 64 TISAIELEEVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred EhhhccccccCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHH
Confidence 33344444567999999999999999999999999999999999999999999998888899999999988775 4678
Q ss_pred hcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 013567 191 LGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAG 270 (440)
Q Consensus 191 lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~ 270 (440)
+|++.+++++....+.+++.+.+. ..+++++||||++.++. .++++.+|.. .| +++.+..|.+++++.|
T Consensus 144 lg~~~~~l~~~~e~~~~~I~~~i~----~~~~~~vVIDSIq~l~~-~~~~~~~g~~---~q---~r~~~~~L~~~ak~~g 212 (454)
T TIGR00416 144 LGLPEPNLYVLSETNWEQICANIE----EENPQACVIDSIQTLYS-PDISSAPGSV---SQ---VRECTAELMRLAKTRG 212 (454)
T ss_pred cCCChHHeEEcCCCCHHHHHHHHH----hcCCcEEEEecchhhcc-cccccCCCCH---HH---HHHHHHHHHHHHHHhC
Confidence 999999999988777776666554 35789999999999874 4443333322 22 3455777899999999
Q ss_pred CEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEe
Q 013567 271 CTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIF 350 (440)
Q Consensus 271 ~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~ 350 (440)
+|+|+++|+.+. + ..+|...+.|.+|..+.+++.. .+..+.++++|||..+......|+|.
T Consensus 213 iTvllt~hvtke-g-------~~aG~~~le~lvD~VI~Le~~~----------~~~~R~L~v~K~R~g~~~e~~~f~it- 273 (454)
T TIGR00416 213 IAIFIVGHVTKE-G-------SIAGPKVLEHMVDTVLYFEGDR----------DSRFRILRSVKNRFGATNEIGIFEMT- 273 (454)
T ss_pred CEEEEEeccccC-C-------ccCCcccEeeeceEEEEEeccC----------CCcEEEEEEecCCCCCCCcEEEEEEe-
Confidence 999999998753 1 2356678999999999997521 12345889999999888788899998
Q ss_pred CCCccc
Q 013567 351 GEGVSK 356 (440)
Q Consensus 351 ~~Gi~~ 356 (440)
++|+..
T Consensus 274 ~~Gl~~ 279 (454)
T TIGR00416 274 EQGLRE 279 (454)
T ss_pred cCCcee
Confidence 899963
No 26
>PRK08760 replicative DNA helicase; Provisional
Probab=99.93 E-value=4.4e-25 Score=231.80 Aligned_cols=295 Identities=14% Similarity=0.146 Sum_probs=207.9
Q ss_pred ccccccchhhHHHHhhcccccccccccccccccCC--CC-ccHHHHHHHHHHHHHHHHhhcCC--CCeeecc--------
Q 013567 49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDS--GD-SRFLDRQRALDAAMNDINSSFGK--GSVTRLG-------- 115 (440)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~~-------- 115 (440)
..++++|...||.+|++++.+|+++..+....... .+ ....+..+.++..+.++...-.. .....+.
T Consensus 118 ~~~s~~ni~~Ya~iV~e~~~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 197 (476)
T PRK08760 118 TTPSAANIAAYAEIVRDKAVLRQLIEVGTTIVNDGFQPEGRESIELLASAEKAVFKIAEAGARGRTDFVAMPGALKDAFE 197 (476)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhccccccCCceeHHHHHHHHHH
Confidence 45677899999999999999999998888876652 21 24555555566666666443111 1111111
Q ss_pred ---C--CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhhhh
Q 013567 116 ---S--AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSYSK 189 (440)
Q Consensus 116 ---~--~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~a~ 189 (440)
. .......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++. .+.+|+||+.||+..+...+
T Consensus 198 ~~~~~~~~~~~~~Gi~TG~~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~R 276 (476)
T PRK08760 198 ELRNRFENGGNITGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMR 276 (476)
T ss_pred HHHHHHhCCCCCCcccCCcHHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHH
Confidence 0 01234568999999999988 78999999999999999999999999998874 47789999999988765322
Q ss_pred hh----cccc-------------------------cceeecCC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchh
Q 013567 190 AL----GVDV-------------------------ENLIVCQP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAE 238 (440)
Q Consensus 190 ~l----Gv~~-------------------------~~l~i~~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~e 238 (440)
.+ +++. .++++.+. .+.+++...++++.+..++++||||+++.+.....
T Consensus 277 l~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~ 356 (476)
T PRK08760 277 LISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGN 356 (476)
T ss_pred HHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCC
Confidence 21 1221 13344332 46788989999888888899999999998752111
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc-CCcee--ecccceeeeeceEEEEEeecccc
Q 013567 239 IEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY-GNPEV--TSGGIALKFFASVRLEIRSTGKI 315 (440)
Q Consensus 239 l~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~-~~~~~--~~gG~~l~~~a~~rl~l~r~~~i 315 (440)
+ ..+...++.+.+.|+.+|++++++||+++|+++.+..-- ..|.. ..++..+.+.+++.+++.|....
T Consensus 357 -----~----~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y 427 (476)
T PRK08760 357 -----S----ENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYY 427 (476)
T ss_pred -----C----cccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechhhc
Confidence 0 123456789999999999999999999999988664321 12322 45888999999999999886544
Q ss_pred cccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567 316 KSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 316 k~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~ 358 (440)
.. +..+.. ....+.|.|||..|+. .+.+.|.....++.
T Consensus 428 ~~-~~~~~~-~~~eliiaKnR~G~~g---~~~l~f~~~~~~f~ 465 (476)
T PRK08760 428 NK-ENSPDK-GLAEIIIGKHRGGPTG---SCKLKFFGEYTRFD 465 (476)
T ss_pred cc-ccccCC-CceEEEEEccCCCCCc---eEEEEEecCCCcee
Confidence 31 101111 2368999999987765 56666666665444
No 27
>PRK05748 replicative DNA helicase; Provisional
Probab=99.93 E-value=4.2e-25 Score=231.20 Aligned_cols=295 Identities=14% Similarity=0.144 Sum_probs=207.5
Q ss_pred ccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC----------
Q 013567 49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS---------- 116 (440)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~---------- 116 (440)
..++++|.+.||.+|++++.+|+++..+...... +......+..+.++..+.++.+....+....+.+
T Consensus 95 ~~~s~~ni~~Ya~iVke~~~~R~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~i~~~~~~~~~~l~ 174 (448)
T PRK05748 95 SVPTAANIEYYAKIVAEKAMLRRLIRTATEIANDAYEPEDDADEILDEAEKKIFEVSERRNKSGFKNIKDVLVKAYDRIE 174 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhccCccCCcCHHHHHHHHHHHHH
Confidence 4677789999999999999999998888777654 2223455555666666666655433222211110
Q ss_pred ---CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhhhhh-
Q 013567 117 ---AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYSKAL- 191 (440)
Q Consensus 117 ---~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a~~l- 191 (440)
.......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++ +.+.+++||+.|++..+...+.+
T Consensus 175 ~~~~~~~~~~gi~TG~~~LD~~~-~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~ 253 (448)
T PRK05748 175 MLHNQTGDITGIPTGFTDLDKMT-SGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLC 253 (448)
T ss_pred HHHhcCCCCCCccCChHHHHHhc-CCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHH
Confidence 01224568999999999998 7999999999999999999999999999986 45889999999998877532221
Q ss_pred ---cccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcC-CcceEEEecccccCCchhhc
Q 013567 192 ---GVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSG-AIDLICVDSVSALTPRAEIE 240 (440)
Q Consensus 192 ---Gv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~~l~~~~el~ 240 (440)
+++. .++++.+ ..+.+++...++++.+.. ++++||||+++.+..... .
T Consensus 254 ~~~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~-~ 332 (448)
T PRK05748 254 AEGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGR-S 332 (448)
T ss_pred HhcCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCC-C
Confidence 2211 1234432 246788888888887776 799999999998853110 0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceeeeeceEEEEEeecccccc
Q 013567 241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALKFFASVRLEIRSTGKIKS 317 (440)
Q Consensus 241 ~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~~~a~~rl~l~r~~~ik~ 317 (440)
++ .+.+++..+.+.|+.+|++++++||+++|+.+.+..-.+ .|. ...++..+.+.++..+++.|......
T Consensus 333 ---~~----~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~~~~ 405 (448)
T PRK05748 333 ---GE----NRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDE 405 (448)
T ss_pred ---Cc----CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEecccccCc
Confidence 11 234568899999999999999999999999886532211 222 24577889999999999988654321
Q ss_pred cCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567 318 VKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 318 ~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~ 358 (440)
..+.. ....+.|.|||..|+. .+.+.|.....+..
T Consensus 406 --~~~~~-~~~e~~v~K~R~G~~g---~~~~~~~~~~~~f~ 440 (448)
T PRK05748 406 --ETENK-NTIEIIIAKQRNGPVG---TVELAFQKEYNKFV 440 (448)
T ss_pred --cccCC-CceEEEEeccCCCCCc---eEEEEEeCCCCccc
Confidence 11111 2468999999987765 46666666665443
No 28
>PRK05636 replicative DNA helicase; Provisional
Probab=99.93 E-value=6.9e-25 Score=231.23 Aligned_cols=294 Identities=15% Similarity=0.148 Sum_probs=206.5
Q ss_pred cccccccchhhHHHHhhcccccccccccccccccC--CCC--ccHHHHHHHHHHHHHHHHhhcCCCCeeec---------
Q 013567 48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGD--SRFLDRQRALDAAMNDINSSFGKGSVTRL--------- 114 (440)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~i~~~~~~~~~~~~--------- 114 (440)
...++++|...||.+|++++.+|+++..+...... +.+ ...++..+.+++.+.+|...-.......+
T Consensus 154 ~~~~s~aNi~~Ya~iVke~a~~R~li~~~~~i~~~~~~~~~~~~~~~~i~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 233 (505)
T PRK05636 154 QSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEGAEIDSVIDRAQQEVFAVSQKNQSEDYAVLADILDPTMD 233 (505)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHH
Confidence 34667789999999999999999998887776554 111 24455555555555555443221111110
Q ss_pred --cC--CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhhh
Q 013567 115 --GS--AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYSK 189 (440)
Q Consensus 115 --~~--~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a~ 189 (440)
.. .......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++ +.+.+++||+.||+..+...+
T Consensus 234 ~i~~~~~~~~~~~Gi~TG~~~LD~~t-~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R 312 (505)
T PRK05636 234 ELEMLSSQGGIATGIPTGFKDLDDLT-NGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMR 312 (505)
T ss_pred HHHHHHhCCCCCCceecChHHHhhhc-CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHH
Confidence 00 01223568999999999987 8999999999999999999999999998876 457789999999987765322
Q ss_pred hh----cccc-------------------------cceeecCC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchh
Q 013567 190 AL----GVDV-------------------------ENLIVCQP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAE 238 (440)
Q Consensus 190 ~l----Gv~~-------------------------~~l~i~~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~e 238 (440)
.+ +++. .++++.+. .+..++...++++....++++||||+++.+.+...
T Consensus 313 ~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~ 392 (505)
T PRK05636 313 LLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKR 392 (505)
T ss_pred HHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC
Confidence 11 1211 23445432 46788999999888888899999999998853111
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Ccee--ecccceeeeeceEEEEEeecccc
Q 013567 239 IEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPEV--TSGGIALKFFASVRLEIRSTGKI 315 (440)
Q Consensus 239 l~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~~--~~gG~~l~~~a~~rl~l~r~~~i 315 (440)
. ..+.+++..+.+.|+.+|++++|+||+++|+++.+..-.+ .|.. ..++..+.+.+++.+++.|.+..
T Consensus 393 ~---------~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y 463 (505)
T PRK05636 393 V---------ESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQ 463 (505)
T ss_pred C---------CcHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEeccccc
Confidence 0 1234568999999999999999999999999987653221 2332 45788999999999999987544
Q ss_pred cccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccc
Q 013567 316 KSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKL 357 (440)
Q Consensus 316 k~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~ 357 (440)
.. ..+..| ...+.|.|||-.|.. .+.+.|.....++
T Consensus 464 ~~--~~~~~g-~~elivaK~RnG~~G---tv~l~f~~~~~rF 499 (505)
T PRK05636 464 DK--DDERAG-EADIILAKHRGGPID---TVQVAHQLHYSRF 499 (505)
T ss_pred CC--ccCCCC-ceEEEEecCCCCCCc---eEEEEeecCcccc
Confidence 31 111112 368999999977664 5666666655443
No 29
>PRK08006 replicative DNA helicase; Provisional
Probab=99.93 E-value=8.9e-25 Score=228.95 Aligned_cols=296 Identities=14% Similarity=0.096 Sum_probs=209.2
Q ss_pred cccccccchhhHHHHhhcccccccccccccccccCC--CC-ccHHHHHHHHHHHHHHHHhhcCCC--Ceee---------
Q 013567 48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDS--GD-SRFLDRQRALDAAMNDINSSFGKG--SVTR--------- 113 (440)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~i~~~~~~~--~~~~--------- 113 (440)
...++++|...||.+|++++.+|+++..+.+..... .+ .+.++..+.++..+.+|....... ....
T Consensus 111 ~~~~s~ani~~Ya~iV~e~~~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 190 (471)
T PRK08006 111 KNTPSAANISAYADIVRERAVVREMISVANEIADAGYDPQGRTSEDLLDLAESRVFQIAESRANKDEGPKNIADILDATV 190 (471)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccCCCCCCceeHHHHHHHHH
Confidence 345667899999999999999999999888887652 22 355566666666666665432221 1111
Q ss_pred --ccC---CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhh
Q 013567 114 --LGS---AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSY 187 (440)
Q Consensus 114 --~~~---~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~ 187 (440)
+.+ .....+.++|||++.||.++ ||+.+|+++.|.|+||+|||+||++++.+++ +.+.+|+||+.||+..+..
T Consensus 191 ~~i~~~~~~~~~~~~Gi~TG~~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~ 269 (471)
T PRK08006 191 ARIEQLFQQPHDGVTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIM 269 (471)
T ss_pred HHHHHHHhcCCCCCCcccCCCHHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 111 11234678999999999998 8999999999999999999999999999987 4577899999999876642
Q ss_pred hhhh----cccc--------------------------cceeecC--CCCHHHHHHHHHHHHhcC-CcceEEEecccccC
Q 013567 188 SKAL----GVDV--------------------------ENLIVCQ--PDNGEMALEIADRMCRSG-AIDLICVDSVSALT 234 (440)
Q Consensus 188 a~~l----Gv~~--------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~~l~ 234 (440)
.+.+ +++. .++++.+ ..+..++...++++.+++ ++++||||+++.+.
T Consensus 270 ~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 270 MRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 2211 1111 2344443 246888999888887665 69999999999875
Q ss_pred CchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceeeeeceEEEEEee
Q 013567 235 PRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALKFFASVRLEIRS 311 (440)
Q Consensus 235 ~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~~~a~~rl~l~r 311 (440)
.... . ..+..+++.+.+.|+.+|++++|+||+++|+.+.+..-.+ .|. ...++..+...+++.+++.|
T Consensus 350 ~~~~-~--------~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R 420 (471)
T PRK08006 350 VPSL-S--------DNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYR 420 (471)
T ss_pred CCCC-C--------CCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEec
Confidence 3111 0 1234568899999999999999999999999987643211 222 24578889999999999998
Q ss_pred cccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchh
Q 013567 312 TGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC 359 (440)
Q Consensus 312 ~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~ 359 (440)
...... + .+.. ....+.|.|||..|.+ .+.+.|.....+..+
T Consensus 421 ~~~y~~-~-~~~~-g~~elivaKnR~G~~G---~v~l~f~~~~~~f~~ 462 (471)
T PRK08006 421 DEVYHE-N-SDLK-GIAEIIIGKQRNGPIG---TVRLTFNGQWSRFDN 462 (471)
T ss_pred cccccc-c-cCCC-CceEEEEecccCCCCc---eEEEEEccCcccccC
Confidence 654431 1 1111 2358899999987664 556666666654443
No 30
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.93 E-value=9.2e-25 Score=227.80 Aligned_cols=291 Identities=15% Similarity=0.125 Sum_probs=206.9
Q ss_pred ccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC----------
Q 013567 49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS---------- 116 (440)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~---------- 116 (440)
.+++++|+..||.+|++.+.+|++...+..+... +...+..+..+.++..+..|............++
T Consensus 87 ~~~~~~n~~~ya~~v~e~~~~R~l~~~~~~~~~~a~~~~~~~~e~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 166 (434)
T TIGR00665 87 NVPSAANIEYYAEIVKEKAILRRLIEAGTEIVELAYDPEGDVEELLDEAEQKIFEIAESRTSGGFKSIKEILKDTVEEIE 166 (434)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHH
Confidence 4566789999999999999999998877777665 2233566666777777777765433323222111
Q ss_pred ---CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhhhh---
Q 013567 117 ---AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSYSK--- 189 (440)
Q Consensus 117 ---~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~a~--- 189 (440)
.......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++. .+.+++||+.|++..+...+
T Consensus 167 ~~~~~~~~~~gi~tG~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~ 245 (434)
T TIGR00665 167 ELYERGGGITGVPTGFTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLS 245 (434)
T ss_pred HHHhCCCCCCcccCCchhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHH
Confidence 01224678999999999999 79999999999999999999999999999775 57889999999987764222
Q ss_pred -hhcccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcc
Q 013567 190 -ALGVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEG 241 (440)
Q Consensus 190 -~lGv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~ 241 (440)
..+++. .++++.+ ..+.+++...++.+.++.++++||||+++.+.....
T Consensus 246 ~~~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~--- 322 (434)
T TIGR00665 246 SESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR--- 322 (434)
T ss_pred HhcCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC---
Confidence 122221 1233432 246788888898888888899999999998853111
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--eeecccceeeeeceEEEEEeeccccccc
Q 013567 242 EIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--EVTSGGIALKFFASVRLEIRSTGKIKSV 318 (440)
Q Consensus 242 ~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~~ 318 (440)
++ .+..++..+++.|+.+|++++|+||+++|+.+..+.-.+ .| ....++..+.+.++..+.+.|......
T Consensus 323 --~~----~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~~~~- 395 (434)
T TIGR00665 323 --SE----NRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNP- 395 (434)
T ss_pred --CC----CHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccccCC-
Confidence 00 233457888999999999999999999999876542111 12 234577889999999999988654431
Q ss_pred CCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567 319 KGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS 355 (440)
Q Consensus 319 ~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~ 355 (440)
.++. ...+.+.|.|||..+++ .+.+.|.....
T Consensus 396 -~~~~-~~~~~l~v~KnR~G~~g---~~~l~~~~~~~ 427 (434)
T TIGR00665 396 -DSED-KGIAEIIIAKQRNGPTG---TVKLAFQGEYT 427 (434)
T ss_pred -CcCC-CCceEEEEecCCCCCCC---eEEEEEecCCC
Confidence 1111 13478999999987654 45565655443
No 31
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.93 E-value=1.6e-24 Score=226.05 Aligned_cols=213 Identities=22% Similarity=0.317 Sum_probs=168.9
Q ss_pred CCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcc
Q 013567 116 SAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGV 193 (440)
Q Consensus 116 ~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv 193 (440)
+.......+++||+++||++|+|||++|+++.|+|+||+|||||+++++....+.+.+++|+++|++.++. +++++|+
T Consensus 53 ~~~~~~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~ 132 (446)
T PRK11823 53 DIEAEEEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGL 132 (446)
T ss_pred hcccccCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCC
Confidence 33334567899999999999999999999999999999999999999999998888899999999988775 5778999
Q ss_pred cccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEE
Q 013567 194 DVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTL 273 (440)
Q Consensus 194 ~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tV 273 (440)
+.+++++....+.+++++.++ +.+++++||||++.++. .++++.+|.. . .+++.+..|..+++++++++
T Consensus 133 ~~~~l~~~~e~~l~~i~~~i~----~~~~~lVVIDSIq~l~~-~~~~~~~g~~---~---qvr~~~~~L~~~ak~~~itv 201 (446)
T PRK11823 133 PSDNLYLLAETNLEAILATIE----EEKPDLVVIDSIQTMYS-PELESAPGSV---S---QVRECAAELMRLAKQRGIAV 201 (446)
T ss_pred ChhcEEEeCCCCHHHHHHHHH----hhCCCEEEEechhhhcc-ccccCCCCCH---H---HHHHHHHHHHHHHHHcCCEE
Confidence 999988887777776666554 35789999999999874 4444333321 1 24556777899999999999
Q ss_pred EEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCC
Q 013567 274 IFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEG 353 (440)
Q Consensus 274 I~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~G 353 (440)
|+++|+...- ..+|...+.|.++.++.+... .+ +..+.++++|||..+......|+|. ++|
T Consensus 202 ilv~hvtk~~--------~~ag~~~lehlvD~Vi~le~~------~~----~~~R~l~i~K~R~g~~~e~~~f~it-~~G 262 (446)
T PRK11823 202 FLVGHVTKEG--------AIAGPRVLEHMVDTVLYFEGD------RH----SRYRILRAVKNRFGATNEIGVFEMT-EQG 262 (446)
T ss_pred EEEeeccCCC--------CcCCcchhhhhCeEEEEEEcC------CC----CceEEEEEccCCCCCCCceEEEEEc-CCC
Confidence 9999987531 134567899999999988631 01 2346799999999888877889998 899
Q ss_pred cccch
Q 013567 354 VSKLG 358 (440)
Q Consensus 354 i~~~~ 358 (440)
+....
T Consensus 263 i~~v~ 267 (446)
T PRK11823 263 LREVS 267 (446)
T ss_pred ceECC
Confidence 97443
No 32
>PRK09165 replicative DNA helicase; Provisional
Probab=99.93 E-value=9.6e-25 Score=230.53 Aligned_cols=300 Identities=15% Similarity=0.159 Sum_probs=208.8
Q ss_pred cccccccchhhHHHHhhcccccccccccccccccCCCC----ccHHHHHHHHHHHHHHHHhhcC-CCCeeeccC------
Q 013567 48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGD----SRFLDRQRALDAAMNDINSSFG-KGSVTRLGS------ 116 (440)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~i~~~~~-~~~~~~~~~------ 116 (440)
..+++++|...||.+|++++.+|+++..+.......-+ .+..+..+.+++.+.++..... ......+.+
T Consensus 105 ~~~~s~~ni~~Ya~iV~e~~~~R~li~~~~~i~~~a~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 184 (497)
T PRK09165 105 TEAVTIINARDYGRIIYDLALRRELINIGEDVVNNAYDAPVDVAPQEQIEDAEQKLYELAETGRYEGGFQSFGTAITEAV 184 (497)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHH
Confidence 35677899999999999999999999888887755222 2344555555555555544221 112211111
Q ss_pred -------CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---------------CCcE
Q 013567 117 -------AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL---------------GGNA 174 (440)
Q Consensus 117 -------~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~---------------~~~v 174 (440)
.......++|||++.||.++ ||+.+|+++.|.|+||+|||+|+++++.+++.. +.+|
T Consensus 185 ~~~~~~~~~~~~~~gi~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~v 263 (497)
T PRK09165 185 DMANAAFKRDGHLSGISTGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVV 263 (497)
T ss_pred HHHHHHHhCCCCCCcccCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeE
Confidence 11224668999999999999 899999999999999999999999999988753 5789
Q ss_pred EEEcCCCCCChhhh----hhhccccc-------------------------ceeecC--CCCHHHHHHHHHHHHhcCCcc
Q 013567 175 MLVDAEHAFDPSYS----KALGVDVE-------------------------NLIVCQ--PDNGEMALEIADRMCRSGAID 223 (440)
Q Consensus 175 v~id~E~~~~~~~a----~~lGv~~~-------------------------~l~i~~--~~~~ee~l~~i~~l~~~~~~~ 223 (440)
+||+.||+.++... ...+++.. ++++.+ ..+.+++...++++.+.++++
T Consensus 264 l~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~ 343 (497)
T PRK09165 264 GFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLD 343 (497)
T ss_pred EEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999877532 22344321 234433 246888999999888888899
Q ss_pred eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceee
Q 013567 224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALK 300 (440)
Q Consensus 224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~ 300 (440)
+||||+++.+..... .. + ..+.++++.+.+.|+.+|++++|+||+++|+++.+..--+ .|. ...++.++.
T Consensus 344 lvvIDyLqli~~~~~-~~--~----~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IE 416 (497)
T PRK09165 344 LLVVDYLQLIRGSSK-RS--S----DNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIE 416 (497)
T ss_pred EEEEcchHhccCCCC-CC--C----CchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchh
Confidence 999999998763111 00 1 1234468899999999999999999999999887653221 232 245788999
Q ss_pred eeceEEEEEeecccccccC-CC-c------------ccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567 301 FFASVRLEIRSTGKIKSVK-GD-E------------DVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 301 ~~a~~rl~l~r~~~ik~~~-g~-~------------~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~ 358 (440)
..+++.+++.|.+...... .. . -......+.|.|||..|.. .+.+.|.....++.
T Consensus 417 qdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~g---~~~~~f~~~~~~f~ 485 (497)
T PRK09165 417 QDADVVMFVYREEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTG---TVKLAFESEFTRFG 485 (497)
T ss_pred ccCCEEEEEeehhhhccccccccccchhhhhhhhhcccCCceEEEEeccCCCCCe---eEEEEEecCCCccc
Confidence 9999999998864332100 00 0 0012368899999987764 56666666665444
No 33
>PRK06749 replicative DNA helicase; Provisional
Probab=99.93 E-value=1.9e-24 Score=224.32 Aligned_cols=290 Identities=14% Similarity=0.053 Sum_probs=203.0
Q ss_pred ccccccchhhHHHHhhcccccccccccccccccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC----------CC
Q 013567 49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS----------AG 118 (440)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~----------~~ 118 (440)
..++++|...||.+|++++.+|+++..+..+.....+....+..+.++..+.++...-..+. ..+.+ ..
T Consensus 84 ~~~s~~n~~~ya~~v~~~~~~R~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 162 (428)
T PRK06749 84 GVPTTSNFSYYEGLVRGAWKMYQAGVLGHKMGERLIAEKSEKIIGETITALCELEEKDCVCE-FDLKDALVDLYEELHQD 162 (428)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHccCCCCC-ccHHHHHHHHHHHHHhc
Confidence 45667899999999999999999988888776653333445555555555555544321111 11100 11
Q ss_pred CCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhh----ccc
Q 013567 119 GALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAL----GVD 194 (440)
Q Consensus 119 ~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~l----Gv~ 194 (440)
.....++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.++++.+.+++||+.||+..+...+-+ +++
T Consensus 163 ~~~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R~ls~~~~i~ 241 (428)
T PRK06749 163 AKEITGIETGYTSLNKMT-CGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRMASCVGEVS 241 (428)
T ss_pred CCCCCCccCCcHHHHHHh-CCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHhccCCC
Confidence 234678999999999988 899999999999999999999999999999988889999999998776422211 111
Q ss_pred c---------------------------cceeecCC--CCHHHHHHHHHHHHhcCC--cceEEEecccccCCchhhcccc
Q 013567 195 V---------------------------ENLIVCQP--DNGEMALEIADRMCRSGA--IDLICVDSVSALTPRAEIEGEI 243 (440)
Q Consensus 195 ~---------------------------~~l~i~~~--~~~ee~l~~i~~l~~~~~--~~lvVIDsl~~l~~~~el~~~~ 243 (440)
. -++++.+. .+..++...++++.+..+ +.+||||+++.+.....-
T Consensus 242 ~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~~---- 317 (428)
T PRK06749 242 GGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDPKH---- 317 (428)
T ss_pred HHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCCC----
Confidence 1 12344332 457788888888876655 559999999987531100
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Ccee--ecccceeeeeceEEEEEeecccccccCC
Q 013567 244 GMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPEV--TSGGIALKFFASVRLEIRSTGKIKSVKG 320 (440)
Q Consensus 244 g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~~--~~gG~~l~~~a~~rl~l~r~~~ik~~~g 320 (440)
+ ..+..++..+.+.|+.+|++++|+||+++|+++.+..-.+ .|.. ..++..++..++..+++.|...... +
T Consensus 318 ~----~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~y~~-~- 391 (428)
T PRK06749 318 K----GNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDK-E- 391 (428)
T ss_pred C----CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeecccccc-c-
Confidence 0 1234568899999999999999999999999987653222 2322 4478889999999999998754431 1
Q ss_pred CcccceEEEEEEeeccCCCCCceEEEEEEeCCCc
Q 013567 321 DEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGV 354 (440)
Q Consensus 321 ~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi 354 (440)
.+. .....+.|.|||..|+. .+.+.|....
T Consensus 392 ~~~-~~~~eliiaKnR~G~~G---~v~~~f~~~~ 421 (428)
T PRK06749 392 TMQ-KEMTEIHVAKHRNGPVG---SFKLRFLKEF 421 (428)
T ss_pred ccC-CCceEEEEecCCCCCCc---eEEEEEecCc
Confidence 111 12368899999977665 4556555544
No 34
>PRK08840 replicative DNA helicase; Provisional
Probab=99.93 E-value=2.8e-24 Score=224.86 Aligned_cols=295 Identities=13% Similarity=0.098 Sum_probs=209.9
Q ss_pred ccccccchhhHHHHhhcccccccccccccccccC--CCC-ccHHHHHHHHHHHHHHHHhhcCC--CCeeec---------
Q 013567 49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGD-SRFLDRQRALDAAMNDINSSFGK--GSVTRL--------- 114 (440)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~--------- 114 (440)
..++++|...||.+|++++.+|+++..+...... +.. .+.++..+.++..+..|...... .....+
T Consensus 105 ~~~s~~ni~~Ya~iVke~s~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 184 (464)
T PRK08840 105 NTPSAANINAYADIVAERALVRNLIGVANEIADAGYDPQGRTSEDLLDMAESKVFAIAEARTSENEGPQNVDSILEKTLE 184 (464)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccCcCCCCceeHHHHHHHHHH
Confidence 4566789999999999999999999888888655 222 45666777777777777654332 111111
Q ss_pred --cC---CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhhh
Q 013567 115 --GS---AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSYS 188 (440)
Q Consensus 115 --~~---~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~a 188 (440)
.. .....+.++|||++.||.++ ||+.+|+++.|.|+||+|||+|+++++.+++. .+.+++||+.||+..+...
T Consensus 185 ~i~~~~~~~~~~~~gi~TG~~~LD~~~-~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~ 263 (464)
T PRK08840 185 RIELLYKTPQDGVTGVDTGFTDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMM 263 (464)
T ss_pred HHHHHHhcCCCCCCCcCCCcHHHHHhh-cCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHH
Confidence 11 11234678999999999998 89999999999999999999999999999874 5778999999998776522
Q ss_pred hh----hcccc--------------------------cceeecC--CCCHHHHHHHHHHHHhcC-CcceEEEecccccCC
Q 013567 189 KA----LGVDV--------------------------ENLIVCQ--PDNGEMALEIADRMCRSG-AIDLICVDSVSALTP 235 (440)
Q Consensus 189 ~~----lGv~~--------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~~l~~ 235 (440)
+. .+++. .++++.+ ..+..++...++++.+.. ++++||||+++.+..
T Consensus 264 Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~ 343 (464)
T PRK08840 264 RMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRV 343 (464)
T ss_pred HHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCC
Confidence 21 12211 1344443 246788888888887654 589999999998853
Q ss_pred chhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc-CCce--eecccceeeeeceEEEEEeec
Q 013567 236 RAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY-GNPE--VTSGGIALKFFASVRLEIRST 312 (440)
Q Consensus 236 ~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~-~~~~--~~~gG~~l~~~a~~rl~l~r~ 312 (440)
... . ..+.+++..+.+.|+.+|++++|+||+++|+.+.+..-- ..|. ...++..++..+++.+++.|.
T Consensus 344 ~~~-~--------~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~ 414 (464)
T PRK08840 344 PAL-S--------DNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRD 414 (464)
T ss_pred CCC-C--------CchHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEecc
Confidence 111 0 123456889999999999999999999999988664321 1232 245788999999999999986
Q ss_pred ccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchh
Q 013567 313 GKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC 359 (440)
Q Consensus 313 ~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~ 359 (440)
+.... ..+..| ...+.|.|||-.|.+ .+.+.|.....+..+
T Consensus 415 ~~y~~--~~~~~~-~~elivaKnR~G~~G---~v~l~f~~~~~~f~~ 455 (464)
T PRK08840 415 EVYNP--DSPLKG-TAEIIIGKQRNGPIG---SVRLTFQGQYSRFDN 455 (464)
T ss_pred cccCC--CcCCCC-ceEEEEecccCCCCc---eEEEEEecCcccccC
Confidence 54431 111112 368899999987765 456666666554443
No 35
>PRK08506 replicative DNA helicase; Provisional
Probab=99.93 E-value=2.5e-24 Score=226.19 Aligned_cols=292 Identities=14% Similarity=0.152 Sum_probs=205.5
Q ss_pred cchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeee-----------ccC---C
Q 013567 54 ASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTR-----------LGS---A 117 (440)
Q Consensus 54 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-----------~~~---~ 117 (440)
+|...||.+|++++.+|+++..+..+... +.+.+.++..+.++..+.+|...-....... +.. .
T Consensus 88 ~ni~~Ya~iV~e~~~~R~li~~~~~i~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 167 (472)
T PRK08506 88 DNIEAYVEEIKEKSIKRELLSLANTIPEQAVEEDQKSSDILDEVERELYSITNGSNSEDFKDSKEVIESTMEHIKKQKRL 167 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999988888765 2334555666666666666654322222111 110 1
Q ss_pred CCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhh----hcc
Q 013567 118 GGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA----LGV 193 (440)
Q Consensus 118 ~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~----lGv 193 (440)
......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.++++.+.+|+||+.||+..+...+. .++
T Consensus 168 ~~~~~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v 246 (472)
T PRK08506 168 GNKDIIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSI 246 (472)
T ss_pred CCCCCCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCC
Confidence 1223668999999999998 89999999999999999999999999999988888999999999877653221 233
Q ss_pred cc-------------------------cceeecCC--CCHHHHHHHHHHHHhc-CCcceEEEecccccCCchhhcccchh
Q 013567 194 DV-------------------------ENLIVCQP--DNGEMALEIADRMCRS-GAIDLICVDSVSALTPRAEIEGEIGM 245 (440)
Q Consensus 194 ~~-------------------------~~l~i~~~--~~~ee~l~~i~~l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~ 245 (440)
+. .++++.+. .+++++...++++.+. +++++||||+++.+.+....
T Consensus 247 ~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~------ 320 (472)
T PRK08506 247 PLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNF------ 320 (472)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCC------
Confidence 22 23445432 4688899988888665 46999999999977531110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc-CCce--eecccceeeeeceEEEEEeecccccccCC--
Q 013567 246 QQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY-GNPE--VTSGGIALKFFASVRLEIRSTGKIKSVKG-- 320 (440)
Q Consensus 246 ~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~-~~~~--~~~gG~~l~~~a~~rl~l~r~~~ik~~~g-- 320 (440)
..+..++..+.+.|+.+|++++|+||+++|+++.+..-- ..|. ...++.++.+.+++.+++.|....+....
T Consensus 321 ---~~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~ 397 (472)
T PRK08506 321 ---KDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKE 397 (472)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEecccccccccccc
Confidence 123445788999999999999999999999988664211 1232 24578889999999999998754421000
Q ss_pred -C-c--ccc-------------eEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567 321 -D-E--DVG-------------VRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 321 -~-~--~~G-------------~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~ 358 (440)
+ + ..| ....+.|.|||..|++ .+.+.|.....+..
T Consensus 398 ~~~~~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~G---~v~l~f~~~~~~f~ 449 (472)
T PRK08506 398 KEKKAKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPTG---TVKLRFQKEFTRFV 449 (472)
T ss_pred cccccccccccccccccccccccceEEEEecCCCCCCc---eEEEEEecCCcccc
Confidence 0 0 012 1367899999987754 56666666665443
No 36
>PRK07004 replicative DNA helicase; Provisional
Probab=99.92 E-value=3.1e-24 Score=224.69 Aligned_cols=297 Identities=18% Similarity=0.166 Sum_probs=207.6
Q ss_pred ccccccccchhhHHHHhhcccccccccccccccccCCCC---ccHHHHHHHHHHHHHHHHhhcCC--CCeee--------
Q 013567 47 SRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGD---SRFLDRQRALDAAMNDINSSFGK--GSVTR-------- 113 (440)
Q Consensus 47 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~i~~~~~~--~~~~~-------- 113 (440)
....++.+|...||.+|++++.+|+++..+........+ .+..+..+.++..+..|...-.. .....
T Consensus 98 ~~~~~s~ani~~Ya~iV~e~~~~R~li~~~~~i~~~~~~~~~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 177 (460)
T PRK07004 98 AQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGARGTQGFLEIGPLLTQV 177 (460)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHcccCcCcCcchhHHHHHHHH
Confidence 334667789999999999999999998888877765221 24455555555555555432111 11111
Q ss_pred ---ccC----CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCCh
Q 013567 114 ---LGS----AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDP 185 (440)
Q Consensus 114 ---~~~----~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~ 185 (440)
+.+ .......++|||++.||.++ ||+++|+++.|.|+||+|||+||++++.+++ +.+.+|+||+.||+..+
T Consensus 178 ~~~i~~~~~~~~~~~~~gi~TG~~~LD~~t-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~q 256 (460)
T PRK07004 178 VERIDTLYHTANPSDVTGTPTGFVDLDRMT-SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQ 256 (460)
T ss_pred HHHHHHHHhccccCCCCCccCCcHHhcccc-cCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHH
Confidence 110 01234568999999999998 7999999999999999999999999998876 46889999999998877
Q ss_pred hhhhhh----cccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcC-CcceEEEeccccc
Q 013567 186 SYSKAL----GVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSG-AIDLICVDSVSAL 233 (440)
Q Consensus 186 ~~a~~l----Gv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~~l 233 (440)
...+.+ +++. .++++.+ ..+..++...++++.+.. ++++||||+++.+
T Consensus 257 l~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~ 336 (460)
T PRK07004 257 LAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLM 336 (460)
T ss_pred HHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhc
Confidence 533322 1211 1234433 246778888888887654 5899999999988
Q ss_pred CCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceeeeeceEEEEEe
Q 013567 234 TPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALKFFASVRLEIR 310 (440)
Q Consensus 234 ~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~~~a~~rl~l~ 310 (440)
.+... + ..+..+++.+.+.|+.+|++++|+||+++|+++.+..-.+ .|. ...++..+...++..+++.
T Consensus 337 ~~~~~-----~----~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~ 407 (460)
T PRK07004 337 SGSSQ-----G----ENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIY 407 (460)
T ss_pred cCCCC-----C----CcHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEec
Confidence 63110 1 1244568999999999999999999999999886643221 232 2457888999999999999
Q ss_pred ecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchh
Q 013567 311 STGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC 359 (440)
Q Consensus 311 r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~ 359 (440)
|.+.... ..+..| ...+.|.|||..|++ .+.+.|.....+..+
T Consensus 408 R~~~y~~--~~~~~g-~~e~ivaKnR~G~~G---~v~l~f~~~~~~F~~ 450 (460)
T PRK07004 408 RDEVYNP--DSPDKG-TAEIIIGKQRNGPIG---PVRLTFLGQYTKFDN 450 (460)
T ss_pred cccccCC--CcCCCC-ceEEEEEccCCCCCc---eEEEEEecCCCcccC
Confidence 8654431 111112 368899999988775 566777666655443
No 37
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.8e-24 Score=218.87 Aligned_cols=297 Identities=15% Similarity=0.115 Sum_probs=215.9
Q ss_pred cccccccccchhhHHHHhhcccccccccccccccccCCCC---ccHHHHHHHHHHHHHHHHhhcCCCCeeeccCC-----
Q 013567 46 SSRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGD---SRFLDRQRALDAAMNDINSSFGKGSVTRLGSA----- 117 (440)
Q Consensus 46 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~----- 117 (440)
.+++.+.++|...||.+|++++..|+++..++++.....+ ...++..+..+.-+.+|...........+++.
T Consensus 85 L~~~~ps~~Ni~~y~~iv~e~s~~R~Li~~~~~i~~~~~~~~~~~~~~~l~~ae~~i~~i~~~~~~~~~~~~~~~l~~~~ 164 (435)
T COG0305 85 LIDRTPSAANIDYYAKIVKEKALLRELIEAGNEIVNLGYESEKDLDEEVLDAAEKKIFDVAERKNSEDFVHIGDLLKETM 164 (435)
T ss_pred HHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 4677889999999999999999999999999988877222 12234445555555555444333222111111
Q ss_pred -------CCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhhhh
Q 013567 118 -------GGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSYSK 189 (440)
Q Consensus 118 -------~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~a~ 189 (440)
....+.++|||++.||.++ +|+++|+++.+.|+||+|||+||++++.+++. ...++++|+.||+.++...+
T Consensus 165 ~~i~~~~~~~~~~Gi~tgf~~LD~~t-~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R 243 (435)
T COG0305 165 DEIEARFENGGLIGVPTGFTDLDEIT-SGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMR 243 (435)
T ss_pred HHHHHHhccCCCcccccCchhhHHHh-cCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHHHHHHH
Confidence 1112679999999999999 78999999999999999999999999999986 45568999999998876433
Q ss_pred hh----cccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchh
Q 013567 190 AL----GVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAE 238 (440)
Q Consensus 190 ~l----Gv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~e 238 (440)
.+ +++. ..+++.+ ..+..++...++++.+++++++++||+++.+....
T Consensus 244 ~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~- 322 (435)
T COG0305 244 LLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGK- 322 (435)
T ss_pred hhccccccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccc-
Confidence 32 2221 1233422 34678899999999999999999999999987411
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCC---ceeecccceeeeeceEEEEEeecccc
Q 013567 239 IEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGN---PEVTSGGIALKFFASVRLEIRSTGKI 315 (440)
Q Consensus 239 l~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~---~~~~~gG~~l~~~a~~rl~l~r~~~i 315 (440)
....+.++++.+.+.|+.+|++++++||.++|+++.+.+--+. ....-...++..-++..+++.|.+..
T Consensus 323 --------~~~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQDAD~VmflyRde~y 394 (435)
T COG0305 323 --------KSENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRDEAY 394 (435)
T ss_pred --------cchhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhhhCCEEEEEechhhc
Confidence 1135667889999999999999999999999999877653221 12344667888999999999987655
Q ss_pred cccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567 316 KSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 316 k~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~ 358 (440)
.+...+ +....+.|.|||-.|.+ .+.+.|........
T Consensus 395 ~~~~~~---~g~aeiIi~K~RnGp~G---tV~l~f~~~~~~F~ 431 (435)
T COG0305 395 LKDTPD---RGEAEVIVAKNRNGPTG---TVKLAFDPQFTKFK 431 (435)
T ss_pred cCCCCC---CceEEEEEEeccCCCCc---eEEEEEeccccccc
Confidence 432222 24568899999977654 55577777765543
No 38
>PRK06904 replicative DNA helicase; Validated
Probab=99.92 E-value=5e-24 Score=223.50 Aligned_cols=295 Identities=16% Similarity=0.128 Sum_probs=206.5
Q ss_pred ccccccchhhHHHHhhcccccccccccccccccCC--CC-ccHHHHHHHHHHHHHHHHhhcCC--CCeee----------
Q 013567 49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDS--GD-SRFLDRQRALDAAMNDINSSFGK--GSVTR---------- 113 (440)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~i~~~~~~--~~~~~---------- 113 (440)
..++++|...||.+|++++.+|+++..+....... .+ .+.++..+.++..+..+...... .....
T Consensus 108 ~~~s~~ni~~Ya~iVke~~~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 187 (472)
T PRK06904 108 NTPSAANILAYADIVREKAILRELISVGNNIAKNAYSPKGQDIKDILDEAERDVFSIAEKRTTANEGPQNVINLLENTID 187 (472)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHhhcccccCCceeHHHHHHHHHH
Confidence 35667899999999999999999999888887552 22 35556666666666666543221 11110
Q ss_pred -ccC----CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhh
Q 013567 114 -LGS----AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSY 187 (440)
Q Consensus 114 -~~~----~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~ 187 (440)
+.+ .......++|||++.||.++ ||+++|+++.|.|+||+|||+|+++++.+++. .+.+|+||+.||+..+..
T Consensus 188 ~i~~~~~~~~~~~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 188 KIENLAATPTNNGVTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred HHHHHHhhccCCCCCCccCChHHHHHHH-hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 000 11234678999999999998 89999999999999999999999999998875 577899999999877642
Q ss_pred hhhh----ccc---------------------------ccceeecC--CCCHHHHHHHHHHHHhc-CCcceEEEeccccc
Q 013567 188 SKAL----GVD---------------------------VENLIVCQ--PDNGEMALEIADRMCRS-GAIDLICVDSVSAL 233 (440)
Q Consensus 188 a~~l----Gv~---------------------------~~~l~i~~--~~~~ee~l~~i~~l~~~-~~~~lvVIDsl~~l 233 (440)
.+.+ +++ ..++++.+ ..+..++...++++.+. +++++||||+++.+
T Consensus 267 ~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli 346 (472)
T PRK06904 267 MRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLM 346 (472)
T ss_pred HHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhc
Confidence 2211 111 01245543 24678888888887665 46999999999987
Q ss_pred CCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc-CCcee--ecccceeeeeceEEEEEe
Q 013567 234 TPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY-GNPEV--TSGGIALKFFASVRLEIR 310 (440)
Q Consensus 234 ~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~-~~~~~--~~gG~~l~~~a~~rl~l~ 310 (440)
.... .. ..+..+++.+.+.|+.+|++++|+||+++|+.+.+..-- ..|.. ..++..+...+++.+++.
T Consensus 347 ~~~~-~~--------~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~ 417 (472)
T PRK06904 347 RAPG-FE--------DNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIY 417 (472)
T ss_pred CCCC-CC--------CcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEe
Confidence 5311 11 123446789999999999999999999999987664321 12322 457889999999999999
Q ss_pred ecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567 311 STGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 311 r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~ 358 (440)
|.+.... +.+... ....+.|.|||..|.+ .+.+.|.....+..
T Consensus 418 R~~~y~~-~~~~~~-~~~elivaKnR~G~~G---~v~l~f~~~~~~f~ 460 (472)
T PRK06904 418 RDEVYNE-TTEDNK-GVAEIIIGKQRNGPIG---RVRLAFQGQYSRFD 460 (472)
T ss_pred ccccccC-ccccCC-CceEEEEeccCCCCCc---eEEEEEccCCCCcc
Confidence 8654431 111111 2368899999987764 56666666655443
No 39
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.92 E-value=7.6e-24 Score=206.46 Aligned_cols=216 Identities=19% Similarity=0.268 Sum_probs=156.8
Q ss_pred ccccCcHHHHHHh--------------cCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---
Q 013567 124 TFPSGCLTLDLAL--------------GGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--- 186 (440)
Q Consensus 124 ~i~TGi~~LD~~L--------------gGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--- 186 (440)
++|||+++||++| +||+|+|.+++|+|+||+|||+||+|++.+.++.+.+++|+++|++.+..
T Consensus 3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~ 82 (259)
T TIGR03878 3 GVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTS 82 (259)
T ss_pred CccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHH
Confidence 6899999999999 59999999999999999999999999999988889999999999766432
Q ss_pred ---hhhhhccccc----ceeecCCCC-------HHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHH
Q 013567 187 ---YSKALGVDVE----NLIVCQPDN-------GEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQA 252 (440)
Q Consensus 187 ---~a~~lGv~~~----~l~i~~~~~-------~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~a 252 (440)
.++.+|++++ ++++.++.+ .++++..+...+++.+++++||||++++.....
T Consensus 83 l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~~-------------- 148 (259)
T TIGR03878 83 LKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAKE-------------- 148 (259)
T ss_pred HHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccch--------------
Confidence 3456787753 566665543 455666677777778999999999998763100
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCC---cccc-eEE
Q 013567 253 RLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGD---EDVG-VRV 328 (440)
Q Consensus 253 r~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~---~~~G-~~~ 328 (440)
...+++++.|..++++.++|+|+++|........ ...+.++..+.|.++..+.++..........+ +..| ..+
T Consensus 149 ~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~~---~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~~~~~~R 225 (259)
T TIGR03878 149 MMAREIVRQLFNFMKKWYQTALFVSQKRSGHEEL---SAEAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKPIGEIVR 225 (259)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeccccCcccc---cccccCCcceeEeeccEEEEeeeeccchhhhhhccccccceEE
Confidence 1135667788899999999999999976522110 11355666789999999999853211100000 0113 345
Q ss_pred EEEEeeccCCCC-CceEEEEEEeCCCcccc
Q 013567 329 RVRVQKSKVSRP-YKQAEFEIIFGEGVSKL 357 (440)
Q Consensus 329 ~v~v~Knr~~~p-~~~~~~~i~~~~Gi~~~ 357 (440)
.+.|.|+|-.+. ....+|+|. ++||...
T Consensus 226 ~l~I~KmRg~~h~~~~~~~~It-~~Gi~~i 254 (259)
T TIGR03878 226 LFRIDGCRMCGHDTKTHVLEID-ETGLVKI 254 (259)
T ss_pred EEEEEEccCCCCCCceeEEEEc-CCceEEe
Confidence 799999986543 456789998 8887543
No 40
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.92 E-value=1.1e-23 Score=202.61 Aligned_cols=201 Identities=19% Similarity=0.287 Sum_probs=152.5
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc-----
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE----- 196 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~----- 196 (440)
+++||+++||++|+||+|+|.++.|+|+||+|||+||+|++.+.++.+.+++||++|++.++. .++.+|++.+
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~ 81 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEE 81 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhc
Confidence 689999999999999999999999999999999999999999988889999999999987764 4556787653
Q ss_pred -ceeecC-------------------CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHH
Q 013567 197 -NLIVCQ-------------------PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMS 256 (440)
Q Consensus 197 -~l~i~~-------------------~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~ 256 (440)
++.+.+ +.+.+++...+.+.+...+.+++||||++.++. .. . . ...
T Consensus 82 g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~-~~----~------~---~~r 147 (237)
T TIGR03877 82 GKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYI-TK----P------A---MAR 147 (237)
T ss_pred CCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhc-CC----h------H---HHH
Confidence 233322 345567777777777777899999999998763 10 0 0 123
Q ss_pred HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeecc
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSK 336 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr 336 (440)
+.+..|.++++++|+|+|+++|....-. ..++..+.|.++..+.++... .++. .++++.|.|.|
T Consensus 148 ~~l~~l~~~lk~~~~t~llt~~~~~~~~--------~~~~~~~~~~~D~vI~L~~~~-----~~~~---~~R~l~i~K~R 211 (237)
T TIGR03877 148 SIVMQLKRVLSGLGCTSIFVSQVSVGER--------GFGGPGVEHAVDGIIRLDLDE-----IDGE---LKRSLIVWKMR 211 (237)
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccc--------cccccceEEEEeEEEEEEEEe-----eCCc---eEEEEEEEECC
Confidence 5677888889999999999999864211 112234688899999987632 1111 34679999999
Q ss_pred CCCCC-ceEEEEEEeCCCcc
Q 013567 337 VSRPY-KQAEFEIIFGEGVS 355 (440)
Q Consensus 337 ~~~p~-~~~~~~i~~~~Gi~ 355 (440)
-.+.. ....|+|. ++||.
T Consensus 212 g~~~~~~~~~~~It-~~Gi~ 230 (237)
T TIGR03877 212 GTKHSMRRHPFEIT-DKGII 230 (237)
T ss_pred CCCCCCceEEEEEc-CCCEE
Confidence 76665 45789997 88885
No 41
>PHA02542 41 41 helicase; Provisional
Probab=99.92 E-value=1.2e-23 Score=220.21 Aligned_cols=281 Identities=13% Similarity=0.069 Sum_probs=197.5
Q ss_pred chhhHHHHhhcccccccccccccccccC--CCCccHHH-----------------------HHHHHHHHHHHHHhhcCCC
Q 013567 55 SSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLD-----------------------RQRALDAAMNDINSSFGKG 109 (440)
Q Consensus 55 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------------~~~~l~~~~~~i~~~~~~~ 109 (440)
|...||.+|++++..|.++..+..+... +.+.+..+ ..+.+.++++.+++....
T Consensus 86 n~~~ya~~v~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~- 164 (473)
T PHA02542 86 DLDWLVKETEKWCQDRAMYNALSKAIEIQDNADKPLEKRNKKLPDVGAIPDIMQEALAISFDSSVGHDYFEDYEERYDS- 164 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHhhhhccchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-
Confidence 8899999999999999998887766643 11111111 011222233344432110
Q ss_pred CeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhh-
Q 013567 110 SVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYS- 188 (440)
Q Consensus 110 ~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a- 188 (440)
......++|||++.||.+++||+++|+++.|.|+||+|||||+++++.++++.+.+|+||+.|++..+...
T Consensus 165 --------~~~~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~R 236 (473)
T PHA02542 165 --------YQSKANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKR 236 (473)
T ss_pred --------ccCCCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHH
Confidence 01225689999999999998999999999999999999999999999999888889999999998876421
Q ss_pred ---hhhccccc-----------------------ceeecC----CCCHHHHHHHHHHHHhcCC--cceEEEecccccCCc
Q 013567 189 ---KALGVDVE-----------------------NLIVCQ----PDNGEMALEIADRMCRSGA--IDLICVDSVSALTPR 236 (440)
Q Consensus 189 ---~~lGv~~~-----------------------~l~i~~----~~~~ee~l~~i~~l~~~~~--~~lvVIDsl~~l~~~ 236 (440)
...+++.+ ++++.. ..+..++...++++....+ +++||||+++.+.+
T Consensus 237 l~a~~~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~- 315 (473)
T PHA02542 237 IDANLLDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICAS- 315 (473)
T ss_pred HHHHHcCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccC-
Confidence 22233321 233332 2356788888888765444 89999999998863
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCce--eecccceeeeeceEEEEEeeccc
Q 013567 237 AEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPE--VTSGGIALKFFASVRLEIRSTGK 314 (440)
Q Consensus 237 ~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~--~~~gG~~l~~~a~~rl~l~r~~~ 314 (440)
....+. + ..+.++++.+.+.|+.+|++++|+||+++|+++.+..- .+|. ...+..++.+.+++.+++.|.+.
T Consensus 316 ~~~~~~-~----~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r-~dP~lsDLreSG~IEqdAD~vl~l~r~~~ 389 (473)
T PHA02542 316 SRLRVS-S----ENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDS-SDVDMSDTAESAGLPATADFMLAVIETEE 389 (473)
T ss_pred CcccCC-C----CChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCcccccc-CCCcchhcccccchHhhcCEEEEEecCcc
Confidence 111110 0 13445689999999999999999999999999876432 1232 34578889999999999987542
Q ss_pred ccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567 315 IKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 315 ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~ 358 (440)
.. +. ....+.|.|||..|......+.+.|......+.
T Consensus 390 ~~----~~---~~~eliv~KnR~G~~g~~g~v~l~f~~~~~~F~ 426 (473)
T PHA02542 390 LA----QM---GQQLVKQLKSRYGDKNKFNKFLMGVDKGNQRWY 426 (473)
T ss_pred cc----cC---CeEEEEEecCCCCCCCCceEEEEEEECCcCccc
Confidence 21 11 346889999998887655567787777665444
No 42
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.91 E-value=8.1e-25 Score=205.46 Aligned_cols=218 Identities=28% Similarity=0.459 Sum_probs=176.9
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCcEEEEcCCCCCChh----hhhh
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVDAEHAFDPS----YSKA 190 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~------~~~~vv~id~E~~~~~~----~a~~ 190 (440)
.+..|+||+..||.+|||||+.-.+++|+|.+|+|||.++.+++..++- .+++++|||+|.++.+. ++.+
T Consensus 93 ~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IAe~ 172 (335)
T KOG1434|consen 93 TVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIAER 172 (335)
T ss_pred ccceeecchHHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHHHH
Confidence 4668999999999999999999999999999999999999999887774 46889999999999886 4666
Q ss_pred hcccc----cceeecCCCCHHHHHHHHHH---HHhc-CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHH
Q 013567 191 LGVDV----ENLIVCQPDNGEMALEIADR---MCRS-GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM 262 (440)
Q Consensus 191 lGv~~----~~l~i~~~~~~ee~l~~i~~---l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L 262 (440)
+++++ +|+++++..+.++.++.+.. .+.+ +..++++|||+++++ +.+++|. |+ ...+.|.+.+.+.+|
T Consensus 173 ~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~F-RvDy~gr-ge--LseRqqkLn~ml~kl 248 (335)
T KOG1434|consen 173 FKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALF-RVDYDGR-GE--LSERQQKLNQMLQKL 248 (335)
T ss_pred hCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehhe-eeccccc-cc--HHHHHHHHHHHHHHH
Confidence 77765 58888888888777665544 3444 588999999999999 6777753 22 224556789999999
Q ss_pred HHHHHhcCCEEEEEecccccccc--cc-CCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCC
Q 013567 263 SGNASKAGCTLIFLNQIRYKIGV--YY-GNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR 339 (440)
Q Consensus 263 ~~lak~~~~tVI~inhl~~~ig~--~~-~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~ 339 (440)
..++++++++|+++||+..+++. +| .++-.|+||..|.|.+..|+.+++. .|+ .+..++.|++- -
T Consensus 249 ~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkg------rg~-----eR~Akl~dSP~-m 316 (335)
T KOG1434|consen 249 NKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKG------RGD-----ERVAKLYDSPS-M 316 (335)
T ss_pred HHHHHhccEEEEEecceecCCcccccccccccCccccchhhhhhheeEEEEcC------Ccc-----eeeeecccCCC-C
Confidence 99999999999999999998874 23 3456789999999999999999985 234 35778889854 4
Q ss_pred CCceEEEEEEeCCCcc
Q 013567 340 PYKQAEFEIIFGEGVS 355 (440)
Q Consensus 340 p~~~~~~~i~~~~Gi~ 355 (440)
|...+.|.|. ..||.
T Consensus 317 pe~e~~y~It-~~Gi~ 331 (335)
T KOG1434|consen 317 PEAEASYVIT-PGGIR 331 (335)
T ss_pred CcceEEEEEc-CCccc
Confidence 5568888887 77874
No 43
>PRK04328 hypothetical protein; Provisional
Probab=99.91 E-value=3.8e-23 Score=200.39 Aligned_cols=205 Identities=20% Similarity=0.297 Sum_probs=153.9
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc---
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE--- 196 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~--- 196 (440)
+++++||+++||++|+||+|+|.++.|.|+||+|||+||++++.+.++.+.+++|+++|++++.. .++.+|++++
T Consensus 2 ~~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~ 81 (249)
T PRK04328 2 VKRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYE 81 (249)
T ss_pred CceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHh
Confidence 35799999999999999999999999999999999999999999998899999999999987764 4667888653
Q ss_pred ---ceeecC-------------------CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHH
Q 013567 197 ---NLIVCQ-------------------PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARL 254 (440)
Q Consensus 197 ---~l~i~~-------------------~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~ 254 (440)
++.+.+ +.+.++++..+.+.+++.+++++||||++.+.. .. . . .
T Consensus 82 ~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~-~~----~------~---~ 147 (249)
T PRK04328 82 EEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYL-TK----P------A---M 147 (249)
T ss_pred hcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhc-CC----h------H---H
Confidence 233322 234556667777777777899999999998753 11 0 0 1
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEee
Q 013567 255 MSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQK 334 (440)
Q Consensus 255 l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~K 334 (440)
.++.+..|.+.+++.|+|+|+++|.... +.+.++..+.|.++..+.++... .+. ..++.+.|.|
T Consensus 148 ~r~~~~~l~~~lk~~g~t~llt~e~~~~--------~~~~~~~~~~~~~D~vI~L~~~~-----~~~---~~~R~l~I~K 211 (249)
T PRK04328 148 ARSIVMQLKRVLSGLGCTAIFVSQVSVG--------ERGFGGPGVEHAVDGIIRLDLDE-----IDG---ELKRSLIVWK 211 (249)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECcccc--------ccccCCCCcEEEEEEEEEEEEEe-----cCC---cEEEEEEEEE
Confidence 2355777888889999999999998641 11223445678899999887642 111 1346789999
Q ss_pred ccCCCCC-ceEEEEEEeCCCcccc
Q 013567 335 SKVSRPY-KQAEFEIIFGEGVSKL 357 (440)
Q Consensus 335 nr~~~p~-~~~~~~i~~~~Gi~~~ 357 (440)
.|-.+.. ...+|+|. ++|+...
T Consensus 212 ~Rg~~~~~~~~~~~It-~~Gi~v~ 234 (249)
T PRK04328 212 MRGTKHSMRRHPFEIT-DKGIVVY 234 (249)
T ss_pred ccCCCCCCceEEEEEc-CCCEEEE
Confidence 9866544 45789998 7898643
No 44
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.89 E-value=7.1e-22 Score=188.58 Aligned_cols=202 Identities=20% Similarity=0.256 Sum_probs=148.5
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccc----
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVEN---- 197 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~---- 197 (440)
+++||++.||++|+||+++|+++.|.|+||+|||||+++++.+.++++.+++|++.|++.++. .++.+|+++++
T Consensus 1 ri~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~ 80 (229)
T TIGR03881 1 RLSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEE 80 (229)
T ss_pred CcCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhc
Confidence 479999999999999999999999999999999999999998888889999999999887664 46678887653
Q ss_pred --eeecC-------------CCCHHHHHHHHHHHHhcC--CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHH
Q 013567 198 --LIVCQ-------------PDNGEMALEIADRMCRSG--AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALR 260 (440)
Q Consensus 198 --l~i~~-------------~~~~ee~l~~i~~l~~~~--~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~ 260 (440)
+.+.+ ..+.+++...+++.++.. ++++++|||+..+.. .+ + .. .++.+.
T Consensus 81 ~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~-~~----~------~~---~r~~~~ 146 (229)
T TIGR03881 81 GKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWL-DK----P------AM---ARKYSY 146 (229)
T ss_pred CCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhc-cC----h------HH---HHHHHH
Confidence 33321 235677777777766553 467999999998863 11 1 11 235567
Q ss_pred HHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP 340 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p 340 (440)
.|+..+++.|+|+|+++|...... ...+..+.+.++..+.++... .+.. .++.+.|.|.|-.+.
T Consensus 147 ~l~~~l~~~~~tvil~~~~~~~~~--------~~~~~~~~~l~D~vI~L~~~~-----~~~~---~~R~i~i~K~R~~~~ 210 (229)
T TIGR03881 147 YLKRVLNRWNFTILLTSQYAITTS--------QAFGFGIEHVADGIIRFRKVV-----VDGE---LRRYLIVEKMRQTNH 210 (229)
T ss_pred HHHHHHHhCCCEEEEEecccccCC--------CCcccceEEEEeEEEEEEEec-----cCCc---EEEEEEEEeccCCCC
Confidence 788889999999999999643111 111234678889888888642 1111 346799999986544
Q ss_pred -CceEEEEEEeCCCcc
Q 013567 341 -YKQAEFEIIFGEGVS 355 (440)
Q Consensus 341 -~~~~~~~i~~~~Gi~ 355 (440)
....+|+|.-++||.
T Consensus 211 ~~~~~~~~I~~~~Gi~ 226 (229)
T TIGR03881 211 DKRAWEIDIVPGKGLV 226 (229)
T ss_pred CCceeEEEEcCCCceE
Confidence 356788887567885
No 45
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.89 E-value=2.1e-22 Score=192.04 Aligned_cols=201 Identities=30% Similarity=0.396 Sum_probs=146.0
Q ss_pred cccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh--hhhhhcccccc----
Q 013567 125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS--YSKALGVDVEN---- 197 (440)
Q Consensus 125 i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~--~a~~lGv~~~~---- 197 (440)
||||+++||++|+||+|+|.++.|.|+||+|||+||+|++.+.++. +.+|+|++.+++.... .++.+|++.+.
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~ 80 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDS 80 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHT
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhc
Confidence 6899999999999999999999999999999999999999999988 9999999999887664 46678887643
Q ss_pred --eeecC---------CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013567 198 --LIVCQ---------PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA 266 (440)
Q Consensus 198 --l~i~~---------~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~la 266 (440)
+.+.+ +.+.+++...+...++..+++++||||++.+.. .... ..+...++.|...+
T Consensus 81 g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~~~~------------~~~r~~l~~l~~~l 147 (226)
T PF06745_consen 81 GKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL-YDDP------------EELRRFLRALIKFL 147 (226)
T ss_dssp TSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-SSSG------------GGHHHHHHHHHHHH
T ss_pred CCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-cCCH------------HHHHHHHHHHHHHH
Confidence 44432 345677888887777777789999999999831 1111 01456788888899
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceeee-eceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC-CceE
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF-FASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP-YKQA 344 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~-~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p-~~~~ 344 (440)
++.++|+|++.|..... .......+.+ .+|..+.++... .++ ...+.+.|.|.|..+. ....
T Consensus 148 ~~~~~t~llt~~~~~~~--------~~~~~~~i~~~l~D~vI~L~~~~-----~~~---~~~R~l~I~K~Rg~~~~~~~~ 211 (226)
T PF06745_consen 148 KSRGVTTLLTSEMPSGS--------EDDGTFGIEHYLADGVIELRYEE-----EGG---RIRRRLRIVKMRGSRHSTGIH 211 (226)
T ss_dssp HHTTEEEEEEEEESSSS--------SSSSSTSHHHHHSSEEEEEEEEE-----ETT---EEEEEEEEEEETTS----BEE
T ss_pred HHCCCEEEEEEccccCc--------ccccccchhhhcccEEEEEEEEe-----eCC---EEEEEEEEEEcCCCCCCCcEE
Confidence 99999999999964311 1223344555 788888887642 112 2456899999997665 4678
Q ss_pred EEEEEeCCCcc
Q 013567 345 EFEIIFGEGVS 355 (440)
Q Consensus 345 ~~~i~~~~Gi~ 355 (440)
+|+|. +.||.
T Consensus 212 ~f~I~-~~Gi~ 221 (226)
T PF06745_consen 212 PFEIT-PGGIE 221 (226)
T ss_dssp EEEEE-TTEEE
T ss_pred EEEEE-CCeEE
Confidence 89998 58884
No 46
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.89 E-value=6e-22 Score=188.61 Aligned_cols=226 Identities=28% Similarity=0.350 Sum_probs=169.1
Q ss_pred cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCcEEEEcCCCCCChhhhhhh-----
Q 013567 123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVDAEHAFDPSYSKAL----- 191 (440)
Q Consensus 123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~------~~~~vv~id~E~~~~~~~a~~l----- 191 (440)
..++||.+.||+.|+|||+-+.|++|+|++|+|||.|+||+....+- .+++++||.+|..+...+...+
T Consensus 82 ~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~~ 161 (351)
T KOG1564|consen 82 SKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTLP 161 (351)
T ss_pred hhcccccHHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhcc
Confidence 57999999999999999999999999999999999999999998874 3689999999998876532111
Q ss_pred --------cccc----cceeecCCCCHHHHHHHHHH----HHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH
Q 013567 192 --------GVDV----ENLIVCQPDNGEMALEIADR----MCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM 255 (440)
Q Consensus 192 --------Gv~~----~~l~i~~~~~~ee~l~~i~~----l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l 255 (440)
+.-. +++++....+++..++++.. +..+..+++|||||+++.+ +.+++....+.+ .+++.+
T Consensus 162 ~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~f-R~E~d~~~Sdl~--~r~~~l 238 (351)
T KOG1564|consen 162 QRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALF-RSEFDYNPSDLK--KRARHL 238 (351)
T ss_pred cCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHH-HHHhccChhhhh--hHHHHH
Confidence 1111 23666656666666665544 3456779999999999998 677764333322 456778
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeccccccccccC---------------CceeecccceeeeeceEEEEEeecccccccCC
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG---------------NPEVTSGGIALKFFASVRLEIRSTGKIKSVKG 320 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~---------------~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g 320 (440)
.+.-.+|..+|.+++++|+++||+.+.+..-++ ....|..|..|.+..++|+.+.|. .|..+.
T Consensus 239 ~rla~~Lr~LA~~~~~aVV~~NQVtd~~~~~~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~--~k~~~s 316 (351)
T KOG1564|consen 239 FRLAGKLRQLASKFDLAVVCANQVTDRVETSDDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRS--TKNCDS 316 (351)
T ss_pred HHHHHHHHHHHHhcCccEEEeeccccccccccccCCccccchhhccccccccccccceeccccceeeeeeec--cccccc
Confidence 888888999999999999999999887432211 126788999999999999999883 231111
Q ss_pred CcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567 321 DEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS 355 (440)
Q Consensus 321 ~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~ 355 (440)
...--..++++|+-+...||. .++|.|. .+||.
T Consensus 317 a~~~~~~R~l~VvySp~~p~~-~~~~~It-~eGI~ 349 (351)
T KOG1564|consen 317 AVSRSAKRTLRVVYSPYLPPS-SCEFMIT-AEGIC 349 (351)
T ss_pred hhhcccceEEEEEecCCCCCc-ceEEEEe-cceEe
Confidence 111113468999999888774 7888887 77873
No 47
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.88 E-value=2.2e-21 Score=188.85 Aligned_cols=220 Identities=18% Similarity=0.175 Sum_probs=155.1
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhhhh----hhcccc---
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSYSK----ALGVDV--- 195 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~a~----~lGv~~--- 195 (440)
+||||++.||+++ ||+.+|+++.|.|+||+|||+|+++++.+++.. +.+|+||+.|++.++...+ ..+++.
T Consensus 1 Gi~TG~~~LD~~l-gG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i 79 (259)
T PF03796_consen 1 GIPTGFPALDRLL-GGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKI 79 (259)
T ss_dssp SB-SSTHHHHHHH-SSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHH
T ss_pred CCCCChHHHHHHh-cCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhh
Confidence 5899999999999 799999999999999999999999999999986 5899999999987765322 223322
Q ss_pred ----------------------cceeecC--CCCHHHHHHHHHHHHhc-CCcceEEEecccccCCchhhcccchhhhHHH
Q 013567 196 ----------------------ENLIVCQ--PDNGEMALEIADRMCRS-GAIDLICVDSVSALTPRAEIEGEIGMQQIGL 250 (440)
Q Consensus 196 ----------------------~~l~i~~--~~~~ee~l~~i~~l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~ 250 (440)
..+++.+ ..+.+++.+.++.+... .++++|+||+++.+.+..... .
T Consensus 80 ~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~---------~ 150 (259)
T PF03796_consen 80 RSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSD---------N 150 (259)
T ss_dssp HCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSS---------C
T ss_pred hccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCC---------C
Confidence 1233322 34678888888888776 789999999999887532111 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cce--eecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567 251 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NPE--VTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR 327 (440)
Q Consensus 251 ~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~~--~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~ 327 (440)
....+..+.+.|+.+|++++++||+++|+.+....-.+ .|. ...++..+.+.++..+.+.+.+....... ..+.
T Consensus 151 ~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~---~~~~ 227 (259)
T PF03796_consen 151 RRQEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRD---DKGE 227 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSS---CTTE
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccC---CCCe
Confidence 12346788999999999999999999999876543221 122 23578889999999999998754432111 1135
Q ss_pred EEEEEeeccCCCCCceEEEEEEeCCCcccchh
Q 013567 328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC 359 (440)
Q Consensus 328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~ 359 (440)
..+.|.|||..+.. .+.+.|.....+..+
T Consensus 228 ~~l~v~KnR~G~~g---~v~~~f~~~~~~f~~ 256 (259)
T PF03796_consen 228 AELIVAKNRNGPTG---TVPLRFNPETSRFTD 256 (259)
T ss_dssp EEEEEEEESSS--E---EEEEEEETTTTEEEE
T ss_pred EEEEEEecCCCCCc---eEEEEEECCCCeEee
Confidence 68999999976554 555666666655443
No 48
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.87 E-value=3.1e-21 Score=188.68 Aligned_cols=204 Identities=18% Similarity=0.213 Sum_probs=148.6
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhhhh----hhcccc-
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSYSK----ALGVDV- 195 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~a~----~lGv~~- 195 (440)
.+++|||++.||.++ ||+++|+++.|.|+||+|||||+++++..++.. +.+++||+.|++.+....+ ..|+..
T Consensus 10 ~~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~ 88 (271)
T cd01122 10 NEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLH 88 (271)
T ss_pred ccCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcc
Confidence 458999999999999 899999999999999999999999999998877 8899999999976554211 113322
Q ss_pred -----------------------cceeecCC---CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHH
Q 013567 196 -----------------------ENLIVCQP---DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG 249 (440)
Q Consensus 196 -----------------------~~l~i~~~---~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~ 249 (440)
.++++.+. .+.+++.+.++.++...++++||||+++.+..... .. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~-~~-------~ 160 (271)
T cd01122 89 LPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDER-AS-------G 160 (271)
T ss_pred cCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCC-Cc-------h
Confidence 12344332 25678888888888788999999999999864210 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc----CCce--eecccceeeeeceEEEEEeecccccccCCCcc
Q 013567 250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY----GNPE--VTSGGIALKFFASVRLEIRSTGKIKSVKGDED 323 (440)
Q Consensus 250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~----~~~~--~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~ 323 (440)
...+.+.++++.|+.+++++++||++++|+++..+.-. +.+. ...|+..+.+.++..+.+++... .+..
T Consensus 161 ~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~-----~e~~ 235 (271)
T cd01122 161 DERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQ-----AELD 235 (271)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCc-----cccc
Confidence 12334677888999999999999999999986432100 1122 24577788999999999987532 1001
Q ss_pred cceEEEEEEeeccCCC
Q 013567 324 VGVRVRVRVQKSKVSR 339 (440)
Q Consensus 324 ~G~~~~v~v~Knr~~~ 339 (440)
-...+.++|.|+|...
T Consensus 236 ~~~~~~i~v~K~R~~~ 251 (271)
T cd01122 236 ERNTTYLRILKNRFTG 251 (271)
T ss_pred cCCcEEEEEEeeccCC
Confidence 1134689999999763
No 49
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.87 E-value=3.6e-21 Score=203.29 Aligned_cols=208 Identities=23% Similarity=0.217 Sum_probs=159.0
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccc--
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVEN-- 197 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~-- 197 (440)
..+++||+++||++|+||+++|.++.|.||||+|||||++|++.+.++.+.+|+|+++|++.++. +++++|++.++
T Consensus 242 ~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~ 321 (484)
T TIGR02655 242 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEME 321 (484)
T ss_pred ccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999998886 67889998764
Q ss_pred ----eeecC--C--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 013567 198 ----LIVCQ--P--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269 (440)
Q Consensus 198 ----l~i~~--~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~ 269 (440)
+.+.. | ...++.++.+.+.+...+++++||||++.+.. .+.. .+ .+..+..|...+++.
T Consensus 322 ~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~--~~~~--------~~---~r~~~~~l~~~lk~~ 388 (484)
T TIGR02655 322 QQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALAR--GVSN--------NA---FRQFVIGVTGYAKQE 388 (484)
T ss_pred hCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH--hcCH--------HH---HHHHHHHHHHHHhhC
Confidence 44433 2 24577777777777778899999999998863 1211 11 244567788899999
Q ss_pred CCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCC-CCceEEEEE
Q 013567 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR-PYKQAEFEI 348 (440)
Q Consensus 270 ~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~-p~~~~~~~i 348 (440)
++|+++++......+. ...+ ..-+.+.+|..+.++..+. +.+ .++.+.|+|+|-.+ +....+|+|
T Consensus 389 ~it~~~t~~~~~~~~~----~~~~--~~~~s~l~D~ii~l~~~e~-----~g~---~~r~i~V~K~R~~~~~~~~~~~~I 454 (484)
T TIGR02655 389 EITGFFTNTSDQFMGS----HSIT--DSHISTITDTILMLQYVEI-----RGE---MSRAINVFKMRGSWHDKGIREFMI 454 (484)
T ss_pred CCeEEEeecccccccC----CccC--CCCeeEeeeEEEEEEEEec-----CCE---EEEEEEEEEccCCCCCCceEEEEE
Confidence 9999999876542221 1111 1235788999999987431 111 34568999998654 346788999
Q ss_pred EeCCCcccc
Q 013567 349 IFGEGVSKL 357 (440)
Q Consensus 349 ~~~~Gi~~~ 357 (440)
. ++||...
T Consensus 455 t-~~Gi~v~ 462 (484)
T TIGR02655 455 S-DKGPEIK 462 (484)
T ss_pred c-CCcEEEc
Confidence 8 8999643
No 50
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.86 E-value=7.8e-21 Score=182.26 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=145.6
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL 198 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l 198 (440)
..++++||++.||.+|+||+|+|.++.|+|+||+|||+|+.+++.+.++.+.+|+|++.|++++.. .+..+|++....
T Consensus 3 ~~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~ 82 (234)
T PRK06067 3 KKEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDF 82 (234)
T ss_pred CceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHH
Confidence 456899999999999999999999999999999999999999999988889999999999887664 355778776532
Q ss_pred ------eec---------CCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHH
Q 013567 199 ------IVC---------QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMS 263 (440)
Q Consensus 199 ------~i~---------~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~ 263 (440)
.+. .....++.+..+...+.+.++++++||+++.+... .. ...+..++..+.
T Consensus 83 ~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~--~~-----------~~~~~~~l~~l~ 149 (234)
T PRK06067 83 FLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY--AE-----------EDDILNFLTEAK 149 (234)
T ss_pred HhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc--CC-----------HHHHHHHHHHHH
Confidence 121 12234667777777777778999999999976421 00 011344555444
Q ss_pred HHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC--
Q 013567 264 GNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY-- 341 (440)
Q Consensus 264 ~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~-- 341 (440)
.+ ++.++|+++++|......... ..+.+.++..+.++... .+.+ ..+++.|.|.|-.+..
T Consensus 150 ~l-~~~g~tvllt~~~~~~~~~~~---------~~~~~l~DgvI~L~~~~-----~~~~---~~r~l~i~K~Rg~~~~~~ 211 (234)
T PRK06067 150 NL-VDLGKTILITLHPYAFSEELL---------SRIRSICDVYLKLRAEQ-----IGGR---YVKVLEVVKLRGARKTTG 211 (234)
T ss_pred HH-HhCCCEEEEEecCCcCCHHHH---------HHHHhheEEEEEEEeec-----cCCE---EeEEEEEEhhcCCCCCCC
Confidence 33 456899999998754221111 12456677777777531 1111 3457999999866544
Q ss_pred ceEEEEEEeCCCcccch
Q 013567 342 KQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 342 ~~~~~~i~~~~Gi~~~~ 358 (440)
....|+|.-+.||....
T Consensus 212 ~~~~~~I~~~~Gi~v~~ 228 (234)
T PRK06067 212 NIISFDVDPAFGIKIIP 228 (234)
T ss_pred CEEEEEEcCCCCeEEEE
Confidence 45788887346886544
No 51
>PRK07773 replicative DNA helicase; Validated
Probab=99.86 E-value=3.6e-21 Score=216.12 Aligned_cols=227 Identities=15% Similarity=0.132 Sum_probs=168.3
Q ss_pred ccccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC--------
Q 013567 47 SRSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS-------- 116 (440)
Q Consensus 47 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~-------- 116 (440)
+..+++++|...||++|++++.+|+++..+.++... +...+.++..+.++..+.+|...-.......+.+
T Consensus 107 ~~~~~s~~ni~~Ya~iV~e~s~~R~li~~~~~i~~~a~~~~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 186 (886)
T PRK07773 107 ISTVPTAANADYYARIVAEKALLRRLIEAGTRIVQYGYAEGADVAEVVDRAQAEIYDVTDRRLSEDFVALEDLLQPTFDE 186 (886)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhccCcCCceeHHHHHHHHHHH
Confidence 345677899999999999999999999888887765 2334555666666666666654322222111111
Q ss_pred -----CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhhhhh
Q 013567 117 -----AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSYSKA 190 (440)
Q Consensus 117 -----~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~a~~ 190 (440)
.......++|||++.||.++ ||+++|+++.|.|+||+|||+||++++.+++. .+.+++||+.||+..+...+.
T Consensus 187 i~~~~~~~~~~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~ 265 (886)
T PRK07773 187 IDAIASSGGLARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRL 265 (886)
T ss_pred HHHHHhcCCCCCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHH
Confidence 11224678999999999998 99999999999999999999999999999875 478999999999887753222
Q ss_pred ----hcccc-------------------------cceeecC--CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhh
Q 013567 191 ----LGVDV-------------------------ENLIVCQ--PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEI 239 (440)
Q Consensus 191 ----lGv~~-------------------------~~l~i~~--~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el 239 (440)
.+++. .++++.+ ..+.+++...++++.+..++++|||||++.+.....
T Consensus 266 ~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~- 344 (886)
T PRK07773 266 LSAEAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKK- 344 (886)
T ss_pred HHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCC-
Confidence 22221 1233322 246788888888888888899999999998853110
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 240 EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 240 ~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
. ..+.+++.++.+.|+.+|++++++||+++|+++.+
T Consensus 345 ----~----~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~ 380 (886)
T PRK07773 345 ----Y----ENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGV 380 (886)
T ss_pred ----C----CCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcch
Confidence 0 12345689999999999999999999999998865
No 52
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.85 E-value=5.7e-20 Score=195.52 Aligned_cols=210 Identities=21% Similarity=0.275 Sum_probs=150.6
Q ss_pred CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh--hhhhhccccc
Q 013567 120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS--YSKALGVDVE 196 (440)
Q Consensus 120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~--~a~~lGv~~~ 196 (440)
+.++++|||+++||++|+||+|+|+++.|+|+||+|||+||+|++.+.+.. +.+|+||++|++.++. .+..+|++.+
T Consensus 8 ~~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~ 87 (509)
T PRK09302 8 PGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQ 87 (509)
T ss_pred CCCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHH
Confidence 367799999999999999999999999999999999999999999988876 8999999999988875 4667888764
Q ss_pred c------eeecCC------------CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHH
Q 013567 197 N------LIVCQP------------DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQA 258 (440)
Q Consensus 197 ~------l~i~~~------------~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~ 258 (440)
+ +.+.+. ...+.++..+...+...+++.+||||++.+.. .+.. ...++..
T Consensus 88 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~--~~d~----------~~~~r~~ 155 (509)
T PRK09302 88 KLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS--GFSN----------EAVVRRE 155 (509)
T ss_pred HHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh--hccC----------HHHHHHH
Confidence 3 333211 13456677777777778899999999998753 1111 1123556
Q ss_pred HHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCC
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS 338 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~ 338 (440)
+..|...+++.++|+|+++|.....+. ...- ....+.++..+.++... .++ ...+.+.|.|.|-.
T Consensus 156 l~~L~~~Lk~~g~TvLlt~~~~~~~~~------~~~~-~~~~~laDgVI~L~~~~-----~~~---~~~R~l~I~K~Rg~ 220 (509)
T PRK09302 156 LRRLFAWLKQKGVTAVITGERGDEYGP------LTRY-GVEEFVSDCVIILRNRL-----EGE---KRTRTLRILKYRGT 220 (509)
T ss_pred HHHHHHHHHhCCCEEEEEECCccCcCC------cccc-CceEEEeeEEEEEeEEc-----cCC---eEEEEEEEEECCCC
Confidence 677777888999999999997642221 0000 12356778888776432 111 12468899999855
Q ss_pred CCC-ceEEEEEEeCCCcccc
Q 013567 339 RPY-KQAEFEIIFGEGVSKL 357 (440)
Q Consensus 339 ~p~-~~~~~~i~~~~Gi~~~ 357 (440)
+.. ....|+|. +.||...
T Consensus 221 ~~~~~~~~f~I~-~~Gi~v~ 239 (509)
T PRK09302 221 THGKNEYPFTIT-EDGISVL 239 (509)
T ss_pred CcCCccEEEEEC-CCcEEEE
Confidence 543 34677875 6777643
No 53
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.84 E-value=4.6e-20 Score=194.83 Aligned_cols=205 Identities=16% Similarity=0.210 Sum_probs=141.9
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh--hhhhhcccccc---
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS--YSKALGVDVEN--- 197 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~--~a~~lGv~~~~--- 197 (440)
++|||+++||++|+||||+|+++.|.|+||+||||||+|++.+.++. +.+++||+.|++.++. .++.+|+++++
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~ 81 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVD 81 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhh
Confidence 68999999999999999999999999999999999999999987665 8999999999887775 57788998753
Q ss_pred ---eeecCC------------CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHH
Q 013567 198 ---LIVCQP------------DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKM 262 (440)
Q Consensus 198 ---l~i~~~------------~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L 262 (440)
+.+.+. ...+..+..+...+..+..+.++||++..+....+.. ...++.+..+
T Consensus 82 ~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~------------~~~r~~l~~L 149 (484)
T TIGR02655 82 EGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV------------SVVRREIFRL 149 (484)
T ss_pred cCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch------------HHHHHHHHHH
Confidence 333322 2334555556566677889999999998875311100 0123344555
Q ss_pred HHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC-
Q 013567 263 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY- 341 (440)
Q Consensus 263 ~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~- 341 (440)
...+++.++|+|+++|..+..+.. . .. ....+.+|..+.++... .+.. .++.+.|.|.|-.+..
T Consensus 150 i~~L~~~g~TvLLtsh~~~~~~~~----~--~~-~~~e~laDgVI~L~~~~-----~~~~---~~R~l~I~K~Rgs~~~~ 214 (484)
T TIGR02655 150 VARLKQIGVTTVMTTERIEEYGPI----A--RY-GVEEFVSDNVVILRNVL-----EGER---RRRTLEILKLRGTSHMK 214 (484)
T ss_pred HHHHHHCCCEEEEEecCccccccc----c--cC-CceeEeeeeEEEEEEEe-----cCCE---EEEEEEEEECCCCCcCC
Confidence 666678899999999987533210 0 00 11266778877777532 1111 2357889998854432
Q ss_pred ceEEEEEEeCCCccc
Q 013567 342 KQAEFEIIFGEGVSK 356 (440)
Q Consensus 342 ~~~~~~i~~~~Gi~~ 356 (440)
...+|+|. ++||..
T Consensus 215 ~~~~~~It-~~Gi~v 228 (484)
T TIGR02655 215 GEYPFTIT-DHGINI 228 (484)
T ss_pred ceEEEEEc-CCcEEE
Confidence 34567776 556653
No 54
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.84 E-value=1e-19 Score=173.36 Aligned_cols=203 Identities=23% Similarity=0.301 Sum_probs=141.3
Q ss_pred CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccc-----eee
Q 013567 128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVEN-----LIV 200 (440)
Q Consensus 128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~-----l~i 200 (440)
|+++||++|+||+|+|++++|.|+||+|||+||++++.+.++.+.+|+|++.|++.++. .+..+|++.+. +.+
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~ 80 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYI 80 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEE
Confidence 78999999999999999999999999999999999999998889999999999987764 45667876643 444
Q ss_pred cCCCC------HHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEE
Q 013567 201 CQPDN------GEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLI 274 (440)
Q Consensus 201 ~~~~~------~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI 274 (440)
.+..+ .+++...+..++++.+++++||||++.+.+ ...+ + ....+.+..+...+++.|+|+|
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~--~~~~---~-------~~~r~~l~~l~~~lk~~~~tvl 148 (224)
T TIGR03880 81 VRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLET--LFDD---D-------AERRTELFRFYSSLRETGVTTI 148 (224)
T ss_pred EecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhh--hcCC---H-------HHHHHHHHHHHHHHHhCCCEEE
Confidence 43222 234445566666777899999999998742 1111 0 0122334455555678899999
Q ss_pred EEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC-CceEEEEEEeCCC
Q 013567 275 FLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP-YKQAEFEIIFGEG 353 (440)
Q Consensus 275 ~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p-~~~~~~~i~~~~G 353 (440)
+++|....- +. ...-..+.+.++..+.++... .++. ...++.+.|.|+|-.+. .....|+|. ++|
T Consensus 149 l~s~~~~~~------~~-~~~~~~~~~l~D~vI~L~~~~-----~~~~-~~~~r~l~v~K~Rg~~~~~~~~~~~i~-~~G 214 (224)
T TIGR03880 149 LTSEADKTN------VF-ASKYGLIEYLADGVIILKYVR-----NSDL-RDVRLAVEVVKMRRSKHSREIKPYEIT-DSG 214 (224)
T ss_pred EEEcccCCC------CC-ccCCCceEEEEeEEEEEeeee-----cccC-cceEEEEEEEEccCCCCCCceEEEEEc-CCc
Confidence 999976411 00 000123678888888886421 1110 11345789999996644 466789997 888
Q ss_pred ccc
Q 013567 354 VSK 356 (440)
Q Consensus 354 i~~ 356 (440)
|..
T Consensus 215 i~v 217 (224)
T TIGR03880 215 ITV 217 (224)
T ss_pred EEE
Confidence 853
No 55
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.84 E-value=8.2e-20 Score=175.47 Aligned_cols=204 Identities=17% Similarity=0.193 Sum_probs=147.6
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhhh----hhhccccc---------
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSYS----KALGVDVE--------- 196 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~a----~~lGv~~~--------- 196 (440)
+||.++ ||+++|+++.|.|+||+|||+||++++.+.+.. +.+++||+.|++...... ...|++..
T Consensus 2 ~LD~~~-~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 80 (242)
T cd00984 2 DLDNLT-GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSD 80 (242)
T ss_pred chhhhh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCH
Confidence 689999 599999999999999999999999999999887 999999999998765422 22344321
Q ss_pred ----------------ceeec--CCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHH
Q 013567 197 ----------------NLIVC--QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQA 258 (440)
Q Consensus 197 ----------------~l~i~--~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~ 258 (440)
++++. ...+.+++...++.+....++++||||+++.+.... .. . .....+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~~--~-----~~~~~~~~~ 151 (242)
T cd00984 81 EDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--KK--G-----NRQQEVAEI 151 (242)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--CC--C-----CHHHHHHHH
Confidence 22222 234678888888888877899999999999876321 00 0 123346788
Q ss_pred HHHHHHHHHhcCCEEEEEeccccccccc-cCCc--eeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeec
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKIGVY-YGNP--EVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKS 335 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~ig~~-~~~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Kn 335 (440)
++.|+.+|+++|++||+++|..+....- ...+ ....|+..+.+.++..+.+.+..... +++.--+...+.|.||
T Consensus 152 ~~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~---~~~~~~~~~~l~v~Kn 228 (242)
T cd00984 152 SRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYN---KESESKGIAEIIVAKN 228 (242)
T ss_pred HHHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccccc---cccCCCCceEEEEECC
Confidence 9999999999999999999998643221 1122 23457788899999999998864322 1111123579999999
Q ss_pred cCCCCCceEEEEEEe
Q 013567 336 KVSRPYKQAEFEIIF 350 (440)
Q Consensus 336 r~~~p~~~~~~~i~~ 350 (440)
|..+.. .+.+.|
T Consensus 229 R~G~~g---~~~l~~ 240 (242)
T cd00984 229 RNGPTG---TVELRF 240 (242)
T ss_pred CCCCCe---eEEEEe
Confidence 986543 444444
No 56
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.84 E-value=9e-20 Score=193.98 Aligned_cols=209 Identities=22% Similarity=0.259 Sum_probs=157.6
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL 198 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l 198 (440)
..++++||+++||.+|+||+|+|.++.|.|+||+|||+|+++++.+.++.+.+++||++|++.++. .++.+|++.+.+
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~ 330 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKM 330 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHH
Confidence 345799999999999999999999999999999999999999999999999999999999987764 466788876432
Q ss_pred ------eec--CC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 013567 199 ------IVC--QP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268 (440)
Q Consensus 199 ------~i~--~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~ 268 (440)
.+. .+ ...++.+..+...+.+.+++++||||++.+.... . ...+.+.++.|...+++
T Consensus 331 ~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~--~-----------~~~~~~~l~~l~~~~k~ 397 (509)
T PRK09302 331 EEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG--S-----------LNEFRQFVIRLTDYLKS 397 (509)
T ss_pred hhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC--C-----------HHHHHHHHHHHHHHHHh
Confidence 222 12 2456667777777777889999999999886311 0 11246678888999999
Q ss_pred cCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCC-CCceEEEE
Q 013567 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR-PYKQAEFE 347 (440)
Q Consensus 269 ~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~-p~~~~~~~ 347 (440)
+|+|+|+++|.....+. ...+. ..+.+.++..+.++... .+.. .++.+.|+|.|..+ +....+|+
T Consensus 398 ~~~t~l~t~~~~~~~g~----~~~~~--~~~~~l~D~vI~L~~~~-----~~~~---~~R~l~I~K~Rg~~~~~~~~~f~ 463 (509)
T PRK09302 398 EEITGLFTNLTPDFMGS----HSITE--SHISSLTDTWILLQYVE-----INGE---MNRALYVLKMRGSWHSNQIREFV 463 (509)
T ss_pred CCCeEEEEeccccccCC----CCCCc--CceEEeeeEEEEEEEee-----cCCe---eEEEEEEEEcCCCCCCCceEEEE
Confidence 99999999987654321 11111 13678999999998642 1111 34679999999654 44678899
Q ss_pred EEeCCCcccc
Q 013567 348 IIFGEGVSKL 357 (440)
Q Consensus 348 i~~~~Gi~~~ 357 (440)
|. ++||...
T Consensus 464 It-~~Gi~v~ 472 (509)
T PRK09302 464 IT-DKGIHIK 472 (509)
T ss_pred Ee-CCcEEEc
Confidence 98 8999543
No 57
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.78 E-value=1.5e-17 Score=162.16 Aligned_cols=210 Identities=25% Similarity=0.329 Sum_probs=149.4
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce-
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL- 198 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l- 198 (440)
++++||||++||++++||+|+|++++|+|+||+|||+|++|++.+.++.+.+|+|++.++..... .+.++|++++.+
T Consensus 2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~ 81 (260)
T COG0467 2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYI 81 (260)
T ss_pred CccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999987775 456688887421
Q ss_pred -----eecC---------------CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHH
Q 013567 199 -----IVCQ---------------PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQA 258 (440)
Q Consensus 199 -----~i~~---------------~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~ 258 (440)
.+.+ +...+.+...+.......+...+|+||+..+..... . ... ....
T Consensus 82 ~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~--~---------~~~-~r~~ 149 (260)
T COG0467 82 EKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLN--D---------PAL-VRRI 149 (260)
T ss_pred hcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcC--c---------hHH-HHHH
Confidence 1110 234455667777777777789999999996542111 0 011 2566
Q ss_pred HHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCC
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVS 338 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~ 338 (440)
+..+.+.+++.++|.+++++....... . +....+.++..+.++... .+..+.++.+.+.|.|..
T Consensus 150 ~~~l~~~~~~~~~t~~~~~~~~~~~~~----~-----~~~~~~~vdgvI~l~~~~-------~~~~~~r~~~~i~k~r~~ 213 (260)
T COG0467 150 LLLLKRFLKKLGVTSLLTTEAPVEERG----E-----SGVEEYIVDGVIRLDLKE-------IEGGGDRRYLRILKMRGT 213 (260)
T ss_pred HHHHHHHHHhCCCEEEEEecccccCCC----c-----cceEEEEEEEEEEEeeec-------ccCceEEEEEEEEecccc
Confidence 777888889999999999886432110 0 023344667777776532 111223338899999874
Q ss_pred CC-CceEEEEEEeCCCcccchh
Q 013567 339 RP-YKQAEFEIIFGEGVSKLGC 359 (440)
Q Consensus 339 ~p-~~~~~~~i~~~~Gi~~~~~ 359 (440)
++ .....|.|.-++|+.....
T Consensus 214 ~~~~~~~~~~i~~g~gi~i~~~ 235 (260)
T COG0467 214 PHSLKVIPFEITDGEGIVVYPE 235 (260)
T ss_pred ccCCceeceEEecCCcEEEecC
Confidence 44 4677888885477754443
No 58
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.76 E-value=3.7e-17 Score=156.77 Aligned_cols=204 Identities=19% Similarity=0.239 Sum_probs=135.7
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccc--
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVEN-- 197 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~-- 197 (440)
+..|.++++.||..++||+|+|+++.|.|+||+||||||++++.+.++++.+++|++++++..+. .++++|++.+.
T Consensus 3 ~~~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~ 82 (230)
T PRK08533 3 LAKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKL 82 (230)
T ss_pred eEEEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHh
Confidence 34678999999999999999999999999999999999999999998899999999999887664 34567887643
Q ss_pred ----eeecC--C--CCH---HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013567 198 ----LIVCQ--P--DNG---EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA 266 (440)
Q Consensus 198 ----l~i~~--~--~~~---ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~la 266 (440)
+.+.+ + ... +..+..+.......++++++||+++.+.. ... +. ...+.+.+.+ ..+
T Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~-~~~-----d~---~~~~~l~~~l----~~l 149 (230)
T PRK08533 83 ISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLIS-NDA-----SE---VAVNDLMAFF----KRI 149 (230)
T ss_pred hcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhc-CCc-----ch---HHHHHHHHHH----HHH
Confidence 22211 1 111 22233233333345789999999998752 110 10 0112222222 223
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC--ceE
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY--KQA 344 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~--~~~ 344 (440)
++.++|++++++... ... .. .....|.+|..+.++... .+++ .++.+.|.|.|-++.. ...
T Consensus 150 ~~~g~tvi~t~~~~~-~~~-----~~---~~~~~~~~DgvI~L~~~~-----~~~~---~~R~i~V~KmR~~~~~~~~~~ 212 (230)
T PRK08533 150 SSLNKVIILTANPKE-LDE-----SV---LTILRTAATMLIRLEVKV-----FGGD---LKNSAKIVKYNMAKGSFQKSI 212 (230)
T ss_pred HhCCCEEEEEecccc-ccc-----cc---ceeEEEeeeEEEEEEEee-----cCCE---EEEEEEEEEecCCccccCCEE
Confidence 345888777766432 110 11 124688999999988642 1111 2467999999986663 478
Q ss_pred EEEEEeCCCcc
Q 013567 345 EFEIIFGEGVS 355 (440)
Q Consensus 345 ~~~i~~~~Gi~ 355 (440)
+|+|..+.|+.
T Consensus 213 ~f~i~~~~g~~ 223 (230)
T PRK08533 213 PFRVEPKIGLA 223 (230)
T ss_pred EEEEcCCccEE
Confidence 89998888874
No 59
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.5e-18 Score=165.95 Aligned_cols=263 Identities=17% Similarity=0.223 Sum_probs=190.3
Q ss_pred CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------hhhhhcccccceeec
Q 013567 128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------YSKALGVDVENLIVC 201 (440)
Q Consensus 128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~a~~lGv~~~~l~i~ 201 (440)
.+..||.+- =-+++|++++|.|++|+||||| +++++.+.+|+.|.+++++.+..... ..+++|+.++++.+.
T Consensus 18 ~~~al~~vs-L~I~~GeI~GIIG~SGAGKSTL-iR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVS-LEIPKGEIFGIIGYSGAGKSTL-LRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccce-EEEcCCcEEEEEcCCCCcHHHH-HHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 355666543 4689999999999999999999 99999999999999999997654331 467899999999887
Q ss_pred CCCCHHHHHH---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------
Q 013567 202 QPDNGEMALE---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM----------- 255 (440)
Q Consensus 202 ~~~~~ee~l~---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l----------- 255 (440)
...++.+.+. ++.++ +++|-+.....-+| .+++| |++|+..+||++
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~el-----LelVgL~dk~~~yP-~qLSG--GQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAEL-----LELVGLSDKADRYP-AQLSG--GQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHH-----HHHcCChhhhccCc-hhcCc--chhhHHHHHHHHhcCCCEEEecC
Confidence 7766655433 22333 34677777777775 88887 999999999998
Q ss_pred ----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccc
Q 013567 256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVG 325 (440)
Q Consensus 256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G 325 (440)
..++..|+.+.+++|+||++|||.++.+...|+...++..|+.+.......++..+...+.+ +.++
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~----~fi~ 243 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQ----EFIG 243 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHH----HHHH
Confidence 56888899999999999999999999999999999999999999999888888776433321 1111
Q ss_pred eEEEEEE---eeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceec--cCceEEeCceecc----------ccHHH
Q 013567 326 VRVRVRV---QKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVR--KGAWYSYGDQRLG----------QGRDK 390 (440)
Q Consensus 326 ~~~~v~v---~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k--~G~~~~~~~~~~g----------q~~~~ 390 (440)
....... .-++.. ......+++.|..--...+-|.+++...++-.. +|+.....+..+| +..++
T Consensus 244 ~~~~~~~~~~~~~~l~-~~~~~~~rl~f~g~~~~~plis~~~~~~~v~~nIl~G~I~~~~~~~~G~L~v~l~g~~~~~~~ 322 (339)
T COG1135 244 ETLEIDLPEELLERLE-SGDGPLLRLTFTGESADQPLLSEVARRFGVDVNILSGNIDEIQGQPFGSLVVELEGDDEEIAA 322 (339)
T ss_pred hhccccCcHHHHhhhc-cCCceEEEEEecCccccchHHHHHHHHhCCceEEEecchhhhCCCcceEEEEEecCchhhHHH
Confidence 1000000 001111 223445777776655566667777766665332 6777777776666 23568
Q ss_pred HHHHHHhCcHHHHHH
Q 013567 391 ALQYLRDNPLLQEEI 405 (440)
Q Consensus 391 ~~~~L~e~~~~~~ei 405 (440)
+.+||.+....++++
T Consensus 323 a~~~l~~~~v~~evl 337 (339)
T COG1135 323 AIEYLNEHGVKVEVL 337 (339)
T ss_pred HHHHHHHcCceEEec
Confidence 999999887665544
No 60
>PRK05973 replicative DNA helicase; Provisional
Probab=99.75 E-value=7.3e-18 Score=161.49 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=104.7
Q ss_pred HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce----ee--cCC
Q 013567 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL----IV--CQP 203 (440)
Q Consensus 132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l----~i--~~~ 203 (440)
+|++. |||++|+++.|.|+||+|||+||++++.+.++.+.+++||+.|++.++. ++..+|++.+++ .+ .++
T Consensus 54 ~~~l~-GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~ 132 (237)
T PRK05973 54 AEELF-SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDA 132 (237)
T ss_pred HHHhc-CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCC
Confidence 78865 9999999999999999999999999999998889999999999997775 456678877543 22 222
Q ss_pred CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 204 DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 204 ~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
.+.++ ++.++....++++|||||++.+.. ... ...+..+++.|+.++++.|+|||+++|+.+..
T Consensus 133 ~~~~~---ii~~l~~~~~~~lVVIDsLq~l~~--~~~-----------~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~ 196 (237)
T PRK05973 133 ICADY---IIARLASAPRGTLVVIDYLQLLDQ--RRE-----------KPDLSVQVRALKSFARERGLIIVFISQIDRSF 196 (237)
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcHHHHhh--ccc-----------chhHHHHHHHHHHHHHhCCCeEEEEecCcccc
Confidence 33443 344454456789999999998742 111 11246667889999999999999999998765
Q ss_pred c
Q 013567 284 G 284 (440)
Q Consensus 284 g 284 (440)
.
T Consensus 197 e 197 (237)
T PRK05973 197 D 197 (237)
T ss_pred c
Confidence 4
No 61
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.66 E-value=5.7e-17 Score=160.85 Aligned_cols=217 Identities=27% Similarity=0.444 Sum_probs=153.9
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhccccc-
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDVE- 196 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~~- 196 (440)
...++||+.+||.+|+||++-|.+++|+||||+|||.||+.+....-..+.+++|||.+..+... ++.+.+....
T Consensus 90 ~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~~~ 169 (326)
T KOG1433|consen 90 LGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLRGRD 169 (326)
T ss_pred ceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhhhhhhhHH
Confidence 34689999999999999999999999999999999999977776654556789999999865442 4445554443
Q ss_pred ---ceeecCCCCHHH---HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 013567 197 ---NLIVCQPDNGEM---ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAG 270 (440)
Q Consensus 197 ---~l~i~~~~~~ee---~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~ 270 (440)
++.+......++ ....+.....+....++++||..+.+ +.+..+ .+. .....+.++..++.|+.++++.+
T Consensus 170 ~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~-~~~~~g-~~~--~~a~~~~~~~~~~~l~~la~~~g 245 (326)
T KOG1433|consen 170 TLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALY-RTTFKG-RGE--LSARQMLLAKFLRSLKKLADEFG 245 (326)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccc-cccccc-ccc--hHHHHHHHHHHHHHHHHHHHhcC
Confidence 333332222222 22223333444567899999999887 355544 111 11233456788999999999999
Q ss_pred CEEEEEecccccccc--ccCC-ceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEE
Q 013567 271 CTLIFLNQIRYKIGV--YYGN-PEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFE 347 (440)
Q Consensus 271 ~tVI~inhl~~~ig~--~~~~-~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~ 347 (440)
..||++||+...+.. +|+. +..+.||.+|.|...+|+.+++. +++ ++.+++.++++.|+ ..+.|+
T Consensus 246 ~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~------~g~-----~~~~k~~~s~~l~e-~~~~~~ 313 (326)
T KOG1433|consen 246 VAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKG------KGE-----RRICKIADSPCLPE-AEAVFA 313 (326)
T ss_pred ceEEEecccccccccccccCcccccccccchHHHHHHHHHHHHhc------ccc-----chhhhhhcCCCCCc-chhHHH
Confidence 999999999887764 6665 66788999999999999888863 222 34667888876655 466666
Q ss_pred EEeCCCcc
Q 013567 348 IIFGEGVS 355 (440)
Q Consensus 348 i~~~~Gi~ 355 (440)
|. ..|+.
T Consensus 314 i~-~~g~~ 320 (326)
T KOG1433|consen 314 IT-EDGIS 320 (326)
T ss_pred HH-hhhhh
Confidence 65 55653
No 62
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.59 E-value=1.8e-15 Score=140.19 Aligned_cols=150 Identities=25% Similarity=0.363 Sum_probs=88.6
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----------cCCcEEEEcCCCCCChh--hh
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK----------LGGNAMLVDAEHAFDPS--YS 188 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~----------~~~~vv~id~E~~~~~~--~a 188 (440)
....++++++.+|.++.|++++|+++.|+|++|+|||||+++++..+.. .+.+++||++|++.... +.
T Consensus 10 ~~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl 89 (193)
T PF13481_consen 10 SFEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRL 89 (193)
T ss_dssp ---HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHH
T ss_pred hhhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHH
Confidence 3557899999999999999999999999999999999999999999886 56799999999985443 12
Q ss_pred hhhcccc---cc-----------eeecCCC----CHHHHHHHHHHHHhc-CCcceEEEecccccCCchhhcccchhhhHH
Q 013567 189 KALGVDV---EN-----------LIVCQPD----NGEMALEIADRMCRS-GAIDLICVDSVSALTPRAEIEGEIGMQQIG 249 (440)
Q Consensus 189 ~~lGv~~---~~-----------l~i~~~~----~~ee~l~~i~~l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~~q~~ 249 (440)
..+.... ++ +.+.... ..+..++.+.+.+.. .++++||||+++.+.+. ..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~-~~~--------- 159 (193)
T PF13481_consen 90 RALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG-DEN--------- 159 (193)
T ss_dssp HHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S--TT---------
T ss_pred HHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC-CCC---------
Confidence 2121111 11 1111111 123445556666665 68999999999999853 111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
....+.+++..|..+++++|++||+++|.++
T Consensus 160 -~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K 190 (193)
T PF13481_consen 160 -SNSAVAQLMQELKRLAKEYGVAVILVHHTNK 190 (193)
T ss_dssp --HHHHHHHHHHHHHHHHHH--EEEEEEEE--
T ss_pred -CHHHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 1122467788889999999999999999875
No 63
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.58 E-value=5.1e-14 Score=129.53 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=114.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce------eecCCC----CH------
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL------IVCQPD----NG------ 206 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l------~i~~~~----~~------ 206 (440)
++.|.||||+|||+|+++++...++.+.+|+|+++|++.+.. +++.+|++.+.+ .+.+.. ..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 478999999999999999999999999999999999987764 566778876432 222211 11
Q ss_pred HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccc
Q 013567 207 EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVY 286 (440)
Q Consensus 207 ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~ 286 (440)
.+++..+...+...++++++||+++.+... + . ......+..+...+++.|+|+|+++|.....+
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~----~---~-------~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~-- 144 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLM----E---Q-------STARLEIRRLLFALKRFGVTTLLTSEQSGLEG-- 144 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhc----C---h-------HHHHHHHHHHHHHHHHCCCEEEEEeccccCCC--
Confidence 133455555555678999999999988631 0 0 01123344445555667999999999875322
Q ss_pred cCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC
Q 013567 287 YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP 340 (440)
Q Consensus 287 ~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p 340 (440)
...+...+.+.++..+.+++.. .++. .++.+.|+|+|-.+.
T Consensus 145 -----~~~~~~~~~~~aD~ii~l~~~~-----~~~~---~~r~l~i~K~R~~~~ 185 (187)
T cd01124 145 -----TGFGGGDVEYLVDGVIRLRLDE-----EGGR---LRRSLSVVKMRGGPH 185 (187)
T ss_pred -----cccCcCceeEeeeEEEEEEEEc-----cCCE---EEEEEEEEEccCCCC
Confidence 1234566789999988888642 1111 245799999996553
No 64
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.55 E-value=3.3e-14 Score=134.71 Aligned_cols=139 Identities=20% Similarity=0.273 Sum_probs=105.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-|++|+++.|.||+||||||| |+++.++.++++|.++|++.+.... .+.+.+|+.++++.+.+..++.|.+.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTL-Lniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTL-LNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 589999999999999999999 9999999999999999998543322 25677999999999999999887766
Q ss_pred HHHHHHhc----------CCcceEEEecccc-cCCchhhcccchhhhHHHHHHHH---------------------HHHH
Q 013567 212 IADRMCRS----------GAIDLICVDSVSA-LTPRAEIEGEIGMQQIGLQARLM---------------------SQAL 259 (440)
Q Consensus 212 ~i~~l~~~----------~~~~lvVIDsl~~-l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l 259 (440)
....+... .-...+-+..... .. +.+++| |++|+...||++ ..++
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-p~eLSG--GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~ 182 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK-PSELSG--GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVL 182 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC-chhcCH--HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHH
Confidence 32111000 0012333433333 33 378887 999999999998 4567
Q ss_pred HHHHHHHHhcCCEEEEEecccc
Q 013567 260 RKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 260 ~~L~~lak~~~~tVI~inhl~~ 281 (440)
..|..+.++.|.|||++||...
T Consensus 183 ~ll~~~~~~~g~tii~VTHd~~ 204 (226)
T COG1136 183 ELLRELNKERGKTIIMVTHDPE 204 (226)
T ss_pred HHHHHHHHhcCCEEEEEcCCHH
Confidence 7777788889999999999975
No 65
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.54 E-value=2.1e-14 Score=133.48 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=110.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMA----- 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~----- 209 (440)
-+.+|+++.|+||+||||||| |++++++..+++|.++|+++..... .+.+.+|+.++++.+++..++-+.
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTl-LRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTL-LRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHH-HHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 468999999999999999999 9999999999999999999765432 257789999999998887765433
Q ss_pred -----------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HH
Q 013567 210 -----------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQ 257 (440)
Q Consensus 210 -----------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~ 257 (440)
.+.+.+++. .|-+-.-+..+| ..++| |++|+..+||++ .+
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~-----~VGL~~ka~~yP-~qLSG--GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~E 174 (240)
T COG1126 103 VKVKKLSKAEAREKALELLE-----KVGLADKADAYP-AQLSG--GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGE 174 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHH-----HcCchhhhhhCc-cccCc--HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHH
Confidence 333333332 344444555565 77887 999999999987 34
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~ 302 (440)
.+.-++.++ +.|.|+|++||.+.-.....++..+...|..+...
T Consensus 175 VL~vm~~LA-~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 175 VLDVMKDLA-EEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred HHHHHHHHH-HcCCeEEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence 555555544 56899999999986433323334445555444443
No 66
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.54 E-value=2.4e-14 Score=135.94 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=122.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMALEIADR 215 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~ 215 (440)
-|++|+++.+.||+||||||+ |++++++..+..|.++|++++..+. .+.+++|+..+.+-+++..++.+.+..+.+
T Consensus 23 ~I~~gef~vliGpSGsGKTTt-LkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTT-LKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK 101 (309)
T ss_pred EecCCeEEEEECCCCCcHHHH-HHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence 578999999999999999999 9999999999999999999987765 378899999999999988888877665554
Q ss_pred HHhc----------CCcceEEEec--ccccCCchhhcccchhhhHHHHHHHHH--------------------H-HHHHH
Q 013567 216 MCRS----------GAIDLICVDS--VSALTPRAEIEGEIGMQQIGLQARLMS--------------------Q-ALRKM 262 (440)
Q Consensus 216 l~~~----------~~~~lvVIDs--l~~l~~~~el~~~~g~~q~~~~ar~l~--------------------~-~l~~L 262 (440)
+..- .-.+++-+|. +..-+| .+++| |++|+.+.+|+++ . .=..+
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-~eLSG--GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~ 178 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYADRYP-HELSG--GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-hhcCc--chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHH
Confidence 4211 1134666764 455554 78887 9999999999872 2 33445
Q ss_pred HHHHHhcCCEEEEEeccccccccccCCceeecccceeeeece
Q 013567 263 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFAS 304 (440)
Q Consensus 263 ~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~ 304 (440)
+.+-++.+.||||+||..++.-.+.+.......|...-+...
T Consensus 179 ~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P 220 (309)
T COG1125 179 KELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTP 220 (309)
T ss_pred HHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCH
Confidence 667788999999999998754333333444555555544443
No 67
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=4.4e-13 Score=124.40 Aligned_cols=201 Identities=20% Similarity=0.246 Sum_probs=136.4
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce---
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL--- 198 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l--- 198 (440)
-+++|-++||+-||||+|-|.++.|-|++|+|||.|+.+++.+++..+..+.|+++|.+...- .+..++++..+.
T Consensus 9 ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~ 88 (235)
T COG2874 9 IIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLS 88 (235)
T ss_pred hccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhc
Confidence 489999999999999999999999999999999999999999999999999999999876553 345567665432
Q ss_pred ---eecC----C-----CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013567 199 ---IVCQ----P-----DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA 266 (440)
Q Consensus 199 ---~i~~----~-----~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~la 266 (440)
.+++ + ...+.+++.+-...+....++++|||+..+....+ .+++.+++..++.++
T Consensus 89 G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~-------------~~~vl~fm~~~r~l~ 155 (235)
T COG2874 89 GRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDS-------------EDAVLNFMTFLRKLS 155 (235)
T ss_pred ceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhccc-------------HHHHHHHHHHHHHHH
Confidence 3332 1 12244555555555666789999999998874221 123556666666654
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC--ceE
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY--KQA 344 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~--~~~ 344 (440)
..|.+||++-|...--.. ++ ..+...+++-++++..+ -|+. .+..++++|-+-++.. +..
T Consensus 156 -d~gKvIilTvhp~~l~e~------~~---~rirs~~d~~l~L~~~~-----~Gg~---~~~~~~i~K~~ga~~s~~~~I 217 (235)
T COG2874 156 -DLGKVIILTVHPSALDED------VL---TRIRSACDVYLRLRLEE-----LGGD---LIKVLEIVKYRGARKSFQNII 217 (235)
T ss_pred -hCCCEEEEEeChhhcCHH------HH---HHHHHhhheeEEEEhhh-----hCCe---eeEEEEEeeecCchhhcCCce
Confidence 457888888886531110 00 11233566767776421 1121 2235688887755543 567
Q ss_pred EEEEEeCCCcc
Q 013567 345 EFEIIFGEGVS 355 (440)
Q Consensus 345 ~~~i~~~~Gi~ 355 (440)
.|++--+-|+.
T Consensus 218 ~F~V~P~~Glk 228 (235)
T COG2874 218 SFRVEPGFGLK 228 (235)
T ss_pred eEEecCCCceE
Confidence 78887666663
No 68
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.48 E-value=9.4e-14 Score=140.65 Aligned_cols=258 Identities=13% Similarity=0.194 Sum_probs=153.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h---hhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S---YSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~---~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.|+|||||||| +++++++.++..|.++++++..... . ..+.+|+.+++..++...++.+.+..
T Consensus 27 ~i~~Gei~gIiG~sGaGKSTL-lr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~ 105 (343)
T TIGR02314 27 HVPAGQIYGVIGASGAGKSTL-IRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVAL 105 (343)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHH
Confidence 478999999999999999999 9999999999999999998864331 1 34568998888777666666554432
Q ss_pred HHHHH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 213 ADRMC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 213 i~~l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
..... . ..-.+.+-+.......+ .++++ |++|+...+|++ ..++..
T Consensus 106 ~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-~~LSg--GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l 182 (343)
T TIGR02314 106 PLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-SNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL 182 (343)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-hhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 11100 0 00012232333333332 56666 889999999987 344555
Q ss_pred HHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEE---eeccCC
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRV---QKSKVS 338 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v---~Knr~~ 338 (440)
|..+.++.++|||+++|.++.+...|+.......|+.........++-.+..... ...++......+ ...+..
T Consensus 183 L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~ 258 (343)
T TIGR02314 183 LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLA----QKFIRSTLHLSIPEDYQERLQ 258 (343)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHH----HHHHhhcccccCChhHHhhcc
Confidence 6666666799999999999887766776666777777654433222211110000 000000000000 000010
Q ss_pred --CC-CceEEEEEEeCCCcccchhhhhHHHHccceec--cCceEEeCceecc----------ccHHHHHHHHHhCcHHHH
Q 013567 339 --RP-YKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVR--KGAWYSYGDQRLG----------QGRDKALQYLRDNPLLQE 403 (440)
Q Consensus 339 --~p-~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k--~G~~~~~~~~~~g----------q~~~~~~~~L~e~~~~~~ 403 (440)
++ .....+.+.|..+-....-|..++...++-.. .|++-++.+..+| +..+++.+||+++...++
T Consensus 259 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 338 (343)
T TIGR02314 259 ATPFADSVPMVRLEFTGQTVDAPLLSQTARRFNVDNSILSSQMDYAGGVKFGIMLAEMHGTQQDTQAAIAYLQEHNVKVE 338 (343)
T ss_pred cccCCCcceEEEEEEcCCCCCchHHHHHHHHhCCcEEEEEeeeeeECCEEEEEEEEEEeCCHHHHHHHHHHHHHcCCEEE
Confidence 11 11234566666655666667666666554221 6788778877766 234568888888765554
Q ss_pred H
Q 013567 404 E 404 (440)
Q Consensus 404 e 404 (440)
+
T Consensus 339 ~ 339 (343)
T TIGR02314 339 V 339 (343)
T ss_pred E
Confidence 3
No 69
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.48 E-value=1.1e-13 Score=139.12 Aligned_cols=177 Identities=20% Similarity=0.283 Sum_probs=133.1
Q ss_pred cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHH
Q 013567 129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~e 207 (440)
...||.+ .--|++|+++.|.||+||||||+ |++++++..+++|.++++++...+. ...|.+|+.+++.-+++..++.
T Consensus 18 ~~av~~i-sl~i~~Gef~~lLGPSGcGKTTl-LR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 18 FTAVDDI-SLDIKKGEFVTLLGPSGCGKTTL-LRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVE 95 (352)
T ss_pred eeEEecc-eeeecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHH
Confidence 4445543 24689999999999999999999 9999999999999999999987654 3678899999999999888887
Q ss_pred HHHHHHHHHHh-----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567 208 MALEIADRMCR-----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------- 255 (440)
Q Consensus 208 e~l~~i~~l~~-----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------- 255 (440)
+.+..--++.+ ..-.++|-++.+..-.| .+++| |++|+...||++
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-~qLSG--GQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR 172 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-HQLSG--GQQQRVALARALVPEPKVLLLDEPLSALDAKLR 172 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-hhhCh--HHHHHHHHHHHhhcCcchhhhcCcccchhHHHH
Confidence 76442111100 01245777888777775 88887 999999999987
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEe
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~ 310 (440)
.+.-..|+.+.++.|+|.|++||..++--.+.+.......|++........++-+
T Consensus 173 ~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 173 EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 2455678888899999999999998765555555566666666655544444433
No 70
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.46 E-value=1.1e-12 Score=116.66 Aligned_cols=157 Identities=27% Similarity=0.325 Sum_probs=109.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhh----hcccccceeecCCC----CHHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA----LGVDVENLIVCQPD----NGEMALEIADRM 216 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~----lGv~~~~l~i~~~~----~~ee~l~~i~~l 216 (440)
++.|+|+||+|||||+.+++......+..++|++.+........+. .....++..+.... ........+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 4789999999999999999998888889999999998876543221 11122344433322 233333344555
Q ss_pred HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccc
Q 013567 217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGG 296 (440)
Q Consensus 217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG 296 (440)
.....++++|||+++.+.+. .... .....+.+.+.+..|...+++.+++||+++|........+.+ ..++
T Consensus 81 ~~~~~~~~lviDe~~~~~~~-~~~~------~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~---~~~~ 150 (165)
T cd01120 81 RERGGDDLIILDELTRLVRA-LREI------REGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRL---TRGA 150 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHH-HHHH------HhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccCccc---ccCc
Confidence 56678999999999988742 1110 001123456778888999999999999999998766544333 5677
Q ss_pred ceeeeeceEEEEEee
Q 013567 297 IALKFFASVRLEIRS 311 (440)
Q Consensus 297 ~~l~~~a~~rl~l~r 311 (440)
..+.+.++.++.+++
T Consensus 151 ~~~~~~~d~~~~l~~ 165 (165)
T cd01120 151 QNLEDIADTVIVLSR 165 (165)
T ss_pred cceeeecceEEEEeC
Confidence 889999999988864
No 71
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=2.7e-13 Score=131.87 Aligned_cols=156 Identities=17% Similarity=0.282 Sum_probs=118.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC---CCCC-hhhhhhhcccccceeecCCCCHHHHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE---HAFD-PSYSKALGVDVENLIVCQPDNGEMALEI-- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E---~~~~-~~~a~~lGv~~~~l~i~~~~~~ee~l~~-- 212 (440)
-|+.|+++++.||+||||||| |++++++..++.|.++++++ +... ....+++|+.+++.-+++..++.+.+..
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTl-LRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl 102 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTL-LRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGL 102 (345)
T ss_pred eecCCcEEEEECCCCCcHHHH-HHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcc
Confidence 567999999999999999999 99999999999999999999 4444 2467889999988877777666554432
Q ss_pred ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567 213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
+.++ ++++-++.++.-+| ..++| |++|+...||++ +.
T Consensus 103 ~~~~~~p~~~~~r~rv~el-----L~lvqL~~la~ryP-~QLSG--GQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~ 174 (345)
T COG1118 103 KVRKERPSEAEIRARVEEL-----LRLVQLEGLADRYP-AQLSG--GQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 174 (345)
T ss_pred cccccCCChhhHHHHHHHH-----HHHhcccchhhcCc-hhcCh--HHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHH
Confidence 2222 45777889999886 78887 899999999987 22
Q ss_pred HH-HHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567 258 AL-RKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA 303 (440)
Q Consensus 258 ~l-~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a 303 (440)
.+ +.|..+..+.++|+|++||+.++.-..++.......|++-...+
T Consensus 175 ~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 175 ELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCC
Confidence 23 33445556679999999999887766666656666665544333
No 72
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.40 E-value=9e-12 Score=119.98 Aligned_cols=195 Identities=16% Similarity=0.185 Sum_probs=121.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh------------cCCcEEEEcCCCCCChh--hhhhhcccc------cceee--
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQK------------LGGNAMLVDAEHAFDPS--YSKALGVDV------ENLIV-- 200 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~------------~~~~vv~id~E~~~~~~--~a~~lGv~~------~~l~i-- 200 (440)
|.+..|+||+|+|||+|+++++..++. .+++|+|+++|++.+.. +...++... +++.+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 678999999999999999999988752 45789999999987643 222332211 22222
Q ss_pred --------cCCC---CHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 013567 201 --------CQPD---NGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKA 269 (440)
Q Consensus 201 --------~~~~---~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~ 269 (440)
.... ....+..+++. +...+++++|||++..+....+.+ ...+..++..|..++++.
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~lvviDpl~~~~~~~~~d-----------~~~~~~~~~~L~~~a~~~ 148 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQ-LLIRRIDLVVIDPLVSFHGVSEND-----------NGAMDAVIKALRRIAAQT 148 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHH-HHhcCCCEEEECChHHhCCCCcCC-----------HHHHHHHHHHHHHHHHHh
Confidence 1111 12222223333 234679999999988774211111 112455677778888899
Q ss_pred CCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccc---cCCCcccceEEEEEEeeccCC-CCCceEE
Q 013567 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKS---VKGDEDVGVRVRVRVQKSKVS-RPYKQAE 345 (440)
Q Consensus 270 ~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~---~~g~~~~G~~~~v~v~Knr~~-~p~~~~~ 345 (440)
|++||+++|..+.-+..-.......|..+|...+...+.+.+...-.. .-+.+..+..+++-+.|+.++ ||.....
T Consensus 149 g~avl~v~H~~K~~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~~~~~~~~~w 228 (239)
T cd01125 149 GAAILLVHHVRKGSAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFGVSKKNNAAATEADRW 228 (239)
T ss_pred CCEEEEEeccCcccccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhcCCChhhcceEEEecccccccCCCCCCCeE
Confidence 999999999986432111123456678888888888888887533211 011222344566778888886 6665555
Q ss_pred EEEE
Q 013567 346 FEII 349 (440)
Q Consensus 346 ~~i~ 349 (440)
|...
T Consensus 229 ~~~~ 232 (239)
T cd01125 229 YRRN 232 (239)
T ss_pred EEEc
Confidence 5554
No 73
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.39 E-value=8.7e-13 Score=132.04 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=121.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-+..|+++.|.||+||||||| |++++++..+.+|.++|+++...+. ...|.+++.+++.-+++..++.+.+..--++.
T Consensus 25 ~i~~Gef~vllGPSGcGKSTl-Lr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~ 103 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTL-LRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR 103 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence 367899999999999999999 9999999999999999999987763 46788999999999998888876654322210
Q ss_pred h----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HHHHHHHHHH
Q 013567 218 R----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QALRKMSGNA 266 (440)
Q Consensus 218 ~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~l~~L~~la 266 (440)
. ..-.+++-|+.+..-.| .+++| |++|+...+|++ + ..-..++++-
T Consensus 104 ~~~k~ei~~rV~eva~~L~l~~lL~r~P-~~LSG--GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh 180 (338)
T COG3839 104 GVPKAEIDKRVKEVAKLLGLEHLLNRKP-LQLSG--GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH 180 (338)
T ss_pred CCchHHHHHHHHHHHHHcCChhHHhcCc-ccCCh--hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHH
Confidence 0 01134666777777775 77877 899999999987 1 2334456666
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEE
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLE 308 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~ 308 (440)
++.++|+|.+||.-.+.-.+.+.......|..........++
T Consensus 181 ~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 181 ERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 779999999999976544444444445556555444444333
No 74
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.39 E-value=1.1e-12 Score=126.63 Aligned_cols=155 Identities=23% Similarity=0.269 Sum_probs=99.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCC-----------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPD----------- 204 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~----------- 204 (440)
-+++|+++.|.|||||||||| |++++++.++..|.+++++....+. .+++.+++.++........
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTL-Lk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTL-LKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EecCCcEEEEECCCCCCHHHH-HHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 578999999999999999999 9999999999999999999876543 4788899887653211111
Q ss_pred ---------CHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------
Q 013567 205 ---------NGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------------- 255 (440)
Q Consensus 205 ---------~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------------- 255 (440)
+.++. +.+.+.++ .+-+..+..-. -.+++| |++|+...||++
T Consensus 103 p~~~~~~~~~~~D~-~~v~~aL~-----~~~~~~la~r~-~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 103 PHLGLFGRPSKEDE-EIVEEALE-----LLGLEHLADRP-VDELSG--GERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred cccccccCCCHhHH-HHHHHHHH-----HhCcHHHhcCc-ccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 11111 11221111 11122222222 244555 677777777776
Q ss_pred -HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567 256 -SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA 303 (440)
Q Consensus 256 -~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a 303 (440)
.+.+..+.++.++.|.|||++.|+-+-.-.+++......+|..+.+..
T Consensus 174 Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence 356777888888999999999998754333223233333444444433
No 75
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.37 E-value=2.7e-12 Score=117.22 Aligned_cols=157 Identities=21% Similarity=0.287 Sum_probs=114.9
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccc
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVEN 197 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~ 197 (440)
..+.|-+.|+.+- =-+++|+++-|+||+|+||||| ++++....++..|.++|++.+.... .+.+++|+.+++
T Consensus 10 ~Y~~g~~aL~~vs-~~i~~Gef~fl~GpSGAGKSTl-lkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD 87 (223)
T COG2884 10 AYPGGREALRDVS-FHIPKGEFVFLTGPSGAGKSTL-LKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQD 87 (223)
T ss_pred hcCCCchhhhCce-EeecCceEEEEECCCCCCHHHH-HHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeee
Confidence 4566766887764 5789999999999999999999 9999999999999999988764322 267889999999
Q ss_pred eeecCCCCHHHHHHHHHHHHh----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------
Q 013567 198 LIVCQPDNGEMALEIADRMCR----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------ 255 (440)
Q Consensus 198 l~i~~~~~~ee~l~~i~~l~~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------ 255 (440)
+.+....++-+.....-..+. ..-.++|-+-.-...+| .+++| |++|+..+||++
T Consensus 88 ~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-~~LSG--GEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 88 FRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-SQLSG--GEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred ccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-cccCc--hHHHHHHHHHHHccCCCeEeecCC
Confidence 888776665444332211100 01134566666666665 77777 899999999987
Q ss_pred --------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 --------SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 --------~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
+.-+..|..-..+.|+|||+.+|...-+..
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHh
Confidence 333444455567789999999999875544
No 76
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.37 E-value=3.4e-12 Score=120.57 Aligned_cols=160 Identities=20% Similarity=0.270 Sum_probs=112.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALE- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~- 211 (440)
-+++|++++|.||+|+||||| ++++.++.+++.|.++|++++.... ...+++|+.+|.=-+++..++.+...
T Consensus 30 ~V~~Gei~~iiGgSGsGKStl-Lr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf 108 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTL-LRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108 (263)
T ss_pred eecCCcEEEEECCCCcCHHHH-HHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence 479999999999999999999 9999999999999999999985433 14667899887655555555433322
Q ss_pred -----------HHHHHHhcCCcceEEEecc-cccCCchhhcccchhhhHHHHHHHH--------------------HHHH
Q 013567 212 -----------IADRMCRSGAIDLICVDSV-SALTPRAEIEGEIGMQQIGLQARLM--------------------SQAL 259 (440)
Q Consensus 212 -----------~i~~l~~~~~~~lvVIDsl-~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l 259 (440)
.++++. ..++.+|-+... ..++| ++++| |++.+...||++ +..+
T Consensus 109 plre~~~lp~~~i~~lv-~~KL~~VGL~~~~~~~~P-sELSG--GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~ 184 (263)
T COG1127 109 PLREHTKLPESLIRELV-LMKLELVGLRGAAADLYP-SELSG--GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184 (263)
T ss_pred ehHhhccCCHHHHHHHH-HHHHHhcCCChhhhhhCc-hhhcc--hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH
Confidence 111111 013445666655 56665 88888 888888889987 2344
Q ss_pred HHHH-HHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567 260 RKMS-GNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA 303 (440)
Q Consensus 260 ~~L~-~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a 303 (440)
..|. .+-+..+.|+|++||....+-..++.......|+.+.+..
T Consensus 185 ~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 185 DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCC
Confidence 4444 4445689999999999887766666656666666554444
No 77
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.36 E-value=2.7e-12 Score=127.48 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=115.2
Q ss_pred cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCH
Q 013567 129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNG 206 (440)
Q Consensus 129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ 206 (440)
...||.+- .-+++|++++|.|||||||||| ++++.+..++.+|.+.++++.... ....+++|+.+++..+++..++
T Consensus 18 ~~~l~~vs-~~i~~Gei~gllG~NGAGKTTl-lk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~ 95 (293)
T COG1131 18 KTALDGVS-FEVEPGEIFGLLGPNGAGKTTL-LKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTV 95 (293)
T ss_pred CEEEecee-EEEcCCeEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccH
Confidence 34555543 6789999999999999999999 999999999999999999987665 3467789999999888888888
Q ss_pred HHHHHHHHHHHhcC----------CcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567 207 EMALEIADRMCRSG----------AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S 256 (440)
Q Consensus 207 ee~l~~i~~l~~~~----------~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~ 256 (440)
.+.+.....+.... -++.+-++.... .+...+++ |++|+...+.++ +
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~lS~--G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~ 172 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN-KKVRTLSG--GMKQRLSIALALLHDPELLILDEPTSGLDPESR 172 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhC-cchhhcCH--HHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHH
Confidence 88777655543211 011222222111 01133333 667766666665 2
Q ss_pred -HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567 257 -QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 257 -~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~ 302 (440)
.+...|..++++.++|||+++|..+.+..+|+.......|+.+...
T Consensus 173 ~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 173 REIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 3344444555555599999999999887766655555566555444
No 78
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=3.6e-12 Score=121.39 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=98.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH-----------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE----------- 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e----------- 207 (440)
-+++|+++.|.||+||||||| |++++++.++..|.+.+++.....+ ....|+.+|+..+++-.++.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTL-LriiAGL~~p~~G~V~~~g~~v~~p--~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~ 101 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTL-LRLIAGLEKPTSGEVLLDGRPVTGP--GPDIGYVFQEDALLPWLTVLDNVALGLELRG 101 (248)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCcccCCC--CCCEEEEeccCcccchhhHHhhheehhhccc
Confidence 478999999999999999999 9999999999999999998865322 23456666555444433332
Q ss_pred ----HHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HHHHHH
Q 013567 208 ----MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QALRKM 262 (440)
Q Consensus 208 ----e~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~l~~L 262 (440)
+..+.+.++ ++.|-+......+| .+++| |++|+...+|++ + ..-..|
T Consensus 102 ~~~~e~~~~a~~~-----L~~VgL~~~~~~~P-~qLSG--GMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l 173 (248)
T COG1116 102 KSKAEARERAKEL-----LELVGLAGFEDKYP-HQLSG--GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL 173 (248)
T ss_pred cchHhHHHHHHHH-----HHHcCCcchhhcCc-cccCh--HHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHH
Confidence 233344444 34566667777776 88888 899999999987 2 233446
Q ss_pred HHHHHhcCCEEEEEeccccc
Q 013567 263 SGNASKAGCTLIFLNQIRYK 282 (440)
Q Consensus 263 ~~lak~~~~tVI~inhl~~~ 282 (440)
.++.++.+.||++|||..++
T Consensus 174 ~~lw~~~~~TvllVTHdi~E 193 (248)
T COG1116 174 LRLWEETRKTVLLVTHDVDE 193 (248)
T ss_pred HHHHHhhCCEEEEEeCCHHH
Confidence 67788999999999999753
No 79
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.33 E-value=4.1e-12 Score=117.04 Aligned_cols=153 Identities=17% Similarity=0.177 Sum_probs=101.0
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccceeecCCCCHHH
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l~i~~~~~~ee 208 (440)
.++.+. =-...|++++|.|+||+||||+ |++++.++.|+.|++++++-+..... ..+.+|+.+...-++...+.+|
T Consensus 17 AvrdVS-F~ae~Gei~GlLG~NGAGKTT~-LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE 94 (245)
T COG4555 17 AVRDVS-FEAEEGEITGLLGENGAGKTTL-LRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE 94 (245)
T ss_pred hhhhee-EEeccceEEEEEcCCCCCchhH-HHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence 444433 3467899999999999999999 99999999999999999998766543 6778999887766666677666
Q ss_pred HHHHHHHHHhcCC----------cceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHH
Q 013567 209 ALEIADRMCRSGA----------IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQA 258 (440)
Q Consensus 209 ~l~~i~~l~~~~~----------~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~ 258 (440)
.+.....+..-.+ .+.+-+++...-. ..+++ -|++|....||++ +..
T Consensus 95 nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rR-v~~~S--~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~ 171 (245)
T COG4555 95 NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRR-VGEFS--TGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK 171 (245)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHH-Hhhhc--hhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHH
Confidence 5443322210000 0011111111100 01222 2556666666655 456
Q ss_pred HHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
++.....++..|.+|||.+|.+.++...|+
T Consensus 172 ~~dfi~q~k~egr~viFSSH~m~EvealCD 201 (245)
T COG4555 172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred HHHHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence 666677778889999999999988865444
No 80
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=2e-11 Score=117.54 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=94.1
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceee--cCCCCHHH
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIV--CQPDNGEM 208 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i--~~~~~~ee 208 (440)
.|+.+- --+++|+++.|+||||+||||| ++++.+++++..|.+++.+.......-..++|+.+++..+ .-|.++.+
T Consensus 19 vl~~i~-l~v~~G~~~~iiGPNGaGKSTL-lK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d 96 (254)
T COG1121 19 VLEDIS-LSVEKGEITALIGPNGAGKSTL-LKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD 96 (254)
T ss_pred eeeccE-EEEcCCcEEEEECCCCCCHHHH-HHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHH
Confidence 344432 4689999999999999999999 9999999999999999988765544445678888886643 33455555
Q ss_pred HHHH-------------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567 209 ALEI-------------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------- 255 (440)
Q Consensus 209 ~l~~-------------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------- 255 (440)
++.. +++.++ .|-+-.+..-. -.+++| |++|+...||++
T Consensus 97 ~V~~g~~~~~g~~~~~~~~d~~~v~~aL~-----~Vgm~~~~~r~-i~~LSG--GQ~QRV~lARAL~~~p~lllLDEP~~ 168 (254)
T COG1121 97 VVLLGRYGKKGWFRRLNKKDKEKVDEALE-----RVGMEDLRDRQ-IGELSG--GQKQRVLLARALAQNPDLLLLDEPFT 168 (254)
T ss_pred HHHccCcccccccccccHHHHHHHHHHHH-----HcCchhhhCCc-ccccCc--HHHHHHHHHHHhccCCCEEEecCCcc
Confidence 4332 111111 11111111111 245555 777777777776
Q ss_pred -------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 -------SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 -------~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
..+.+-|..+.++ |+||++++|+-..+..
T Consensus 169 gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 169 GVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMA 204 (254)
T ss_pred cCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHh
Confidence 2344444444444 9999999999775543
No 81
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=6.6e-12 Score=127.41 Aligned_cols=159 Identities=16% Similarity=0.258 Sum_probs=101.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.|||||||||| ++++++...+..|.+++++...... .+.+.+|+.+++..++...++.+.+..
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTL-lk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~ 105 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTL-IRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL 105 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHH
Confidence 468999999999999999999 9999999999999999998754321 124568888877666555555444332
Q ss_pred HHHHH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 213 ADRMC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 213 i~~l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
..... . ..-.+.+-++...... ..++++ |++|+...+|++ ..++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~ 182 (343)
T PRK11153 106 PLELAGTPKAEIKARVTELLELVGLSDKADRY-PAQLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182 (343)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 11100 0 0001112222221222 244554 778888778776 234444
Q ss_pred HHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
|..+.++.++|||+++|..+.+..+++.......|+....
T Consensus 183 L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 183 LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 4555556699999999998877666665556666665543
No 82
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=9.5e-12 Score=126.78 Aligned_cols=159 Identities=14% Similarity=0.255 Sum_probs=108.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-+++|++++|.|||||||||| +++++++.++..|.++++++...+. ...+.+|+.+++..+++..++.+.+.......
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTL-Lr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTL-LRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR 104 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc
Confidence 467999999999999999999 9999999999999999999865432 23467899998887776667665544221100
Q ss_pred -------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567 218 -------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA 266 (440)
Q Consensus 218 -------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la 266 (440)
. ..-.+.+-++.+..-.+ .++++ |++|+...+|++ ..+...|+.+.
T Consensus 105 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~LSg--Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 181 (356)
T PRK11650 105 GMPKAEIEERVAEAARILELEPLLDRKP-RELSG--GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH 181 (356)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 00122333444444443 56665 888888888887 23444555566
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
++.++|+|+++|....+-.+++.......|+....
T Consensus 182 ~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~ 216 (356)
T PRK11650 182 RRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI 216 (356)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 66799999999998766555555555556665443
No 83
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.28 E-value=9.6e-12 Score=117.83 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=106.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccccceee--cCCCCHHHHHH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDVENLIV--CQPDNGEMALE- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~~~l~i--~~~~~~ee~l~- 211 (440)
-+.+|+.++|+|++||||||| .++++++.++..|.+++++....... +.+.+.+.+++.+- -+..++.+++.
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL-~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E 107 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTL-ARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE 107 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHH-HHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence 478999999999999999999 89999999999999999997554432 34445555543321 11122222211
Q ss_pred ------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH---------------------HH
Q 013567 212 ------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQ 257 (440)
Q Consensus 212 ------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~ 257 (440)
.+.+++. .|-++ ++...+| .+++| |++|+...+|++ ++
T Consensus 108 pl~~~~~~~~~~~i~~~L~-----~VgL~~~~l~R~P-~eLSG--GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~ 179 (252)
T COG1124 108 PLRPHGLSKSQQRIAELLD-----QVGLPPSFLDRRP-HELSG--GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQ 179 (252)
T ss_pred hhccCCccHHHHHHHHHHH-----HcCCCHHHHhcCc-hhcCh--hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHH
Confidence 1222221 22222 2223333 56666 777777777776 57
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceE
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASV 305 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~ 305 (440)
++.-|..+.++++.|.|+|+|....+.-+|+...++..|..++.+...
T Consensus 180 IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 180 ILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechh
Confidence 788888888999999999999998887777777777777776665543
No 84
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.27 E-value=1.3e-11 Score=112.13 Aligned_cols=138 Identities=20% Similarity=0.278 Sum_probs=94.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-hhhhhhhcccccceeecCCCCHHHH--------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-PSYSKALGVDVENLIVCQPDNGEMA-------- 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~~~a~~lGv~~~~l~i~~~~~~ee~-------- 209 (440)
-++.|++++|.||+|+||||| ++++++...|..|.++|++++... +.+.+-+.+.++.-.++...++++.
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTL-LnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTL-LNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred eecCCcEEEEECCCCccHHHH-HHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 578999999999999999999 999999999999999999986433 3344445555543333323333222
Q ss_pred -------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 210 -------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 210 -------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
.+.++... ..+-+.+...-.| .+++| |++|+...+|.+ .+.+.-
T Consensus 100 LkL~a~~r~~v~~aa-----~~vGl~~~~~RLP-~~LSG--GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~L 171 (231)
T COG3840 100 LKLNAEQREKVEAAA-----AQVGLAGFLKRLP-GELSG--GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171 (231)
T ss_pred cccCHHHHHHHHHHH-----HHhChhhHhhhCc-cccCc--hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHH
Confidence 11222221 1234555555554 66666 788888877765 345566
Q ss_pred HHHHHHhcCCEEEEEecccccccc
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
+..++.+.+.|+++++|..++...
T Consensus 172 v~~l~~E~~~TllmVTH~~~Da~~ 195 (231)
T COG3840 172 VSQLCDERKMTLLMVTHHPEDAAR 195 (231)
T ss_pred HHHHHHhhCCEEEEEeCCHHHHHH
Confidence 677888999999999999876643
No 85
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.27 E-value=1.3e-11 Score=125.60 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=110.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
=+++|++++|.|||||||||| +++++++..+..|.++++++...+. ...+.+|+.+++..+++..++.+.+.......
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTL-LRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR 104 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc
Confidence 367899999999999999999 9999999999999999998865432 24567899999887777667666544321100
Q ss_pred -------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567 218 -------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA 266 (440)
Q Consensus 218 -------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la 266 (440)
+ ..-.+.+-++.+..-.+ .++++ |++|+...+|++ .+....|+.+.
T Consensus 105 ~~~~~~~~~~~~~~l~~l~L~~~~~~~~-~~LSg--Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 181 (353)
T TIGR03265 105 GMGRAEVAERVAELLDLVGLPGSERKYP-GQLSG--GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181 (353)
T ss_pred CCCHHHHHHHHHHHHHHcCCCchhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 00122333444444443 56665 888888888887 23444455566
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~ 302 (440)
++.++|+|+++|..+.+-.+++....+..|+.....
T Consensus 182 ~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 182 RRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 677999999999988765555555556666665443
No 86
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.26 E-value=1.8e-11 Score=124.92 Aligned_cols=159 Identities=17% Similarity=0.234 Sum_probs=108.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---h----hhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---Y----SKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~----a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-|++|++++|.|||||||||| +++++++..+..|.++|+++...... + .+.+++.+++..+++..++.+.+.
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTL-Lr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~ 93 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTT-VRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTS 93 (363)
T ss_pred EEcCCCEEEEECCCCChHHHH-HHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHH
Confidence 478999999999999999999 99999999999999999998654321 2 457899998888777667665443
Q ss_pred HHHHHH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567 212 IADRMC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR 260 (440)
Q Consensus 212 ~i~~l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~ 260 (440)
....+. . ..-++.+-++......+ .++++ |++|+...+|++ ..+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-~~LSG--Gq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~ 170 (363)
T TIGR01186 94 LGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-DELSG--GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQD 170 (363)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 321110 0 00122333444444443 56666 888998889887 23444
Q ss_pred HHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
.|..+.++.+.|||+++|..+.+-.+++.......|+....
T Consensus 171 ~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~ 211 (363)
T TIGR01186 171 ELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV 211 (363)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee
Confidence 44455556799999999998765544554455555655433
No 87
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=2.5e-11 Score=114.46 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=106.8
Q ss_pred cccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccce
Q 013567 125 FPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENL 198 (440)
Q Consensus 125 i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l 198 (440)
.|-|-..|+.+- =-|++|++++|.|++|+||||| |++++++..+..|.+++++++.... .+.+++|+.++.+
T Consensus 13 yp~~~~aL~~Vn-l~I~~GE~VaiIG~SGaGKSTL-LR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~ 90 (258)
T COG3638 13 YPGGHQALKDVN-LEINQGEMVAIIGPSGAGKSTL-LRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQF 90 (258)
T ss_pred cCCCceeeeeEe-EEeCCCcEEEEECCCCCcHHHH-HHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccC
Confidence 445555665542 4689999999999999999999 9999999999999999999865433 2567899998877
Q ss_pred eecCCCCHHHH------------------------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHH
Q 013567 199 IVCQPDNGEMA------------------------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARL 254 (440)
Q Consensus 199 ~i~~~~~~ee~------------------------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~ 254 (440)
.+.+..++-+. ...++.+-+ +=+.|..- .....++| |++|++.+||+
T Consensus 91 nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLer-----vgi~~~A~--qra~~LSG--GQQQRVaIARa 161 (258)
T COG3638 91 NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALER-----VGILDKAY--QRASTLSG--GQQQRVAIARA 161 (258)
T ss_pred CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHH-----cCcHHHHH--HHhccCCc--chhHHHHHHHH
Confidence 66655443221 111111110 11222211 11245565 88999999998
Q ss_pred H---------------------HHHHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567 255 M---------------------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYY 287 (440)
Q Consensus 255 l---------------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~ 287 (440)
+ .+.|..|++++++.|+|||+.-|..+-...+|
T Consensus 162 L~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~ 215 (258)
T COG3638 162 LVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYA 215 (258)
T ss_pred HhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHH
Confidence 7 46888899999999999999999977544433
No 88
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=2.3e-11 Score=123.72 Aligned_cols=161 Identities=17% Similarity=0.214 Sum_probs=109.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRM- 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l- 216 (440)
-+++|++++|.|||||||||| +++++++..+..|.++++++...+. ...+.+|+.+++..+++..++.+.+......
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~ 106 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTV-LRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML 106 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc
Confidence 477999999999999999999 9999999999999999998765432 2346789988887777666665544321110
Q ss_pred ------Hh---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567 217 ------CR---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA 266 (440)
Q Consensus 217 ------~~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la 266 (440)
.. ..-.+++-++.+..-.+ .++++ |++|+...+|++ .++...|..+.
T Consensus 107 ~~~~~~~~~~v~~~l~~~gl~~~~~r~~-~~LSg--Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 183 (351)
T PRK11432 107 GVPKEERKQRVKEALELVDLAGFEDRYV-DQISG--GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183 (351)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCCh-hhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 00 00112333344433332 56665 888888888887 23444455555
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA 303 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a 303 (440)
++.++|+|+++|..+.+-.+++.......|+......
T Consensus 184 ~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~ 220 (351)
T PRK11432 184 QQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGS 220 (351)
T ss_pred HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 6679999999999887655555555566666654443
No 89
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.24 E-value=2.8e-11 Score=120.93 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=98.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l 216 (440)
-+++|++++|.||||+||||| ++++.++..+..|.+++++...... ...+.+|+.+++..++...++.+.+.....+
T Consensus 29 ~i~~Gei~gllGpNGaGKSTL-l~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~ 107 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTT-LRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY 107 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH
Confidence 578999999999999999999 9999999999999999998764332 2456789988887666656666555432221
Q ss_pred Hhc----------CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567 217 CRS----------GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA 266 (440)
Q Consensus 217 ~~~----------~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la 266 (440)
... .-.+.+-+.....-. ...+++ |++|+...++++ +..++.+....
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LS~--G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 108 FGLSAAAARALVPPLLEFAKLENKADAK-VGELSG--GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184 (306)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCc-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 000 000111111111111 123333 667776677665 23444444444
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccce
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA 298 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~ 298 (440)
++.|.|||+++|..+.+...|+.......|+.
T Consensus 185 ~~~g~till~sH~l~e~~~~~d~i~il~~G~i 216 (306)
T PRK13537 185 LARGKTILLTTHFMEEAERLCDRLCVIEEGRK 216 (306)
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 55699999999999877655544444444443
No 90
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.23 E-value=3.3e-11 Score=123.07 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=108.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC--cEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG--NAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADR 215 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~--~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~ 215 (440)
-+++|+++.|+|||||||||| +++++++..+.. |.++++++...+. ...+.+|+.+++..+++..++.+.+.....
T Consensus 27 ~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~ 105 (362)
T TIGR03258 27 EIEAGELLALIGKSGCGKTTL-LRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLR 105 (362)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHH
Confidence 477999999999999999999 999999999999 9999998865432 245678999988877766677665543211
Q ss_pred HH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHH
Q 013567 216 MC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSG 264 (440)
Q Consensus 216 l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~ 264 (440)
.. . ..-.+.+-++.+..-.+ .++++ |++|+...+|++ .++...|..
T Consensus 106 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-~~LSg--Gq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~ 182 (362)
T TIGR03258 106 AQKMPKADIAERVADALKLVGLGDAAAHLP-AQLSG--GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA 182 (362)
T ss_pred HcCCCHHHHHHHHHHHHHhcCCCchhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 00 0 00122333444433333 55665 888888888887 233444445
Q ss_pred HHHhc-CCEEEEEeccccccccccCCceeecccceeeee
Q 013567 265 NASKA-GCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 265 lak~~-~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~ 302 (440)
+.++. ++|+|++||..+.+..+++.......|+.....
T Consensus 183 l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 183 LHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred HHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 55555 899999999988765555555555566555443
No 91
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=3e-11 Score=123.97 Aligned_cols=159 Identities=16% Similarity=0.271 Sum_probs=109.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-hhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-PSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-+++|+++.|.|||||||||| +++++++..+..|.++++++...+ +...+.+|+.+++..+++..++.+.+.......
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 119 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTL-LRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD 119 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 467999999999999999999 999999999999999999886433 234567899998887777767766554321100
Q ss_pred -------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH-HHHHHHHHH
Q 013567 218 -------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ-ALRKMSGNA 266 (440)
Q Consensus 218 -------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~-~l~~L~~la 266 (440)
+ ..-.+.+-++.+....+ .++++ |++|+...+|++ +. +...|..+.
T Consensus 120 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~-~~LSg--Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 196 (377)
T PRK11607 120 KLPKAEIASRVNEMLGLVHMQEFAKRKP-HQLSG--GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196 (377)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 00122333444433333 56665 888888888887 22 334455666
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
++.++|+|+++|..+.+..+++.......|+....
T Consensus 197 ~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 197 ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred HhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 77899999999998866555555555556655443
No 92
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.23 E-value=2.9e-11 Score=124.02 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=106.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-+++|++++|.||+||||||| +++++++.++..|.++++++..... ...+.+|+.+++..+++..++.+.+.......
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTL-Lr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 114 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTV-LRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ 114 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc
Confidence 478999999999999999999 9999999999999999999865432 24567899888887776666655443211100
Q ss_pred -------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567 218 -------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA 266 (440)
Q Consensus 218 -------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la 266 (440)
. ..-.+.+-++.+....| .++++ |++|+...+|++ ..+...|..+.
T Consensus 115 ~~~~~~~~~~~~~~l~~~~l~~~~~~~p-~~LSg--Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 191 (375)
T PRK09452 115 KTPAAEITPRVMEALRMVQLEEFAQRKP-HQLSG--GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQ 191 (375)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 0 00122333444333333 55665 888888888887 23444455556
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
++.++|+|++||....+-.+++.......|+...
T Consensus 192 ~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~ 225 (375)
T PRK09452 192 RKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ 225 (375)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 6679999999999876554455444555555543
No 93
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.23 E-value=3e-11 Score=120.42 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=96.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l 216 (440)
-+++|++++|.|||||||||| ++++.++..+..|.+++++...... .+.+.+|+.+++..++...++.+.+.....+
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 93 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTT-IRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL 93 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 578999999999999999999 9999999999999999988654322 2455688888876666555665544322111
Q ss_pred Hh----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567 217 CR----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA 266 (440)
Q Consensus 217 ~~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la 266 (440)
.. ..-.+.+-++....-. ...+++ |++|+...++++ ...+..+....
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 170 (302)
T TIGR01188 94 YGLPKDEAEERAEELLELFELGEAADRP-VGTYSG--GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhCCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 00 0001111122211111 134444 777777777766 23333433333
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccce
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA 298 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~ 298 (440)
++.|.|||+++|..+.+...++.......|+.
T Consensus 171 ~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i 202 (302)
T TIGR01188 171 KEEGVTILLTTHYMEEADKLCDRIAIIDHGRI 202 (302)
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 44589999999998876554444434444443
No 94
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=6e-11 Score=113.71 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=87.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC------hhhhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD------PSYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~------~~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
=+++|++++|.|||||||||| ++++.+...+..|.+++++..... ..+.+.+++.+++..++...++.+.+..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 100 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTL-LRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF 100 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHH
Confidence 478999999999999999999 999999999999999998865322 1234567777776555544454443322
Q ss_pred ----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567 213 ----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------- 255 (440)
Q Consensus 213 ----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------- 255 (440)
+..++. .+-++....-. ..++++ |++|+...++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 172 (235)
T cd03261 101 PLREHTRLSEEEIREIVLEKLE-----AVGLRGAEDLY-PAELSG--GMKKRVALARALALDPELLLYDEPTAGLDPIAS 172 (235)
T ss_pred HHhhccCCCHHHHHHHHHHHHH-----HcCCchhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 111111 11122111111 134554 777777777776
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
..++..|..+.++.+.|||+++|..+.+..
T Consensus 173 ~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~ 202 (235)
T cd03261 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFA 202 (235)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCHHHHHH
Confidence 223344444444468999999999876543
No 95
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=6.3e-11 Score=120.69 Aligned_cols=153 Identities=19% Similarity=0.284 Sum_probs=101.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-+++|++++|.|||||||||| ++++++...+..|.++++++.... ....+.+++.+++..+++..++.+.+.
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTL-l~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 98 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSL-INAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR 98 (352)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHH
Confidence 367999999999999999999 999999999999999998865432 123456888888776666556654433
Q ss_pred H---------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 212 I---------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 212 ~---------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
. +.+++. .+-++.+....+ .++++ |++|+...+|++ ..++..
T Consensus 99 ~~~~~~~~~~~~~~l~-----~~gl~~~~~~~~-~~LSg--Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~ 170 (352)
T PRK11144 99 YGMAKSMVAQFDKIVA-----LLGIEPLLDRYP-GSLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170 (352)
T ss_pred hhhhhhhHHHHHHHHH-----HcCCchhhhCCc-ccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 2 122222 222233222222 45554 778888888776 233444
Q ss_pred HHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
|..+.++.+.|||+++|..+.+..+++.......|+...
T Consensus 171 L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~ 209 (352)
T PRK11144 171 LERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA 209 (352)
T ss_pred HHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 555556679999999999876655555545555555543
No 96
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.21 E-value=3.8e-11 Score=122.21 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=103.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH------
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI------ 212 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~------ 212 (440)
+.+|++++|.|||||||||| +++++++..+..|.++++++..... ...+.+|+.+++..+++..++.+.+..
T Consensus 25 i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~ 103 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTL-LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLP 103 (353)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcc
Confidence 67899999999999999999 9999999999999999998764332 234568888887666655555444332
Q ss_pred -------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHH
Q 013567 213 -------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQA 258 (440)
Q Consensus 213 -------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~ 258 (440)
+..++ +.+-++.+..-.+ .++++ |++|+...+|++ ..+
T Consensus 104 ~~~~~~~~~~~~~~~~~l-----~~~~L~~~~~~~~-~~LSg--Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l 175 (353)
T PRK10851 104 RRERPNAAAIKAKVTQLL-----EMVQLAHLADRYP-AQLSG--GQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL 175 (353)
T ss_pred cccCCCHHHHHHHHHHHH-----HHcCCchhhhCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 11121 1222333333332 55555 888888888887 234
Q ss_pred HHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
...|..+.++.++|+|+++|..+.+..+++.......|+....
T Consensus 176 ~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 176 RRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 4445555566799999999998876555555555555655433
No 97
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.20 E-value=5.1e-11 Score=120.73 Aligned_cols=156 Identities=14% Similarity=0.129 Sum_probs=96.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l 216 (440)
-+++|++++|.||||+||||| ++++.++..+..|.+++++...... ...+.+|+.+++..++...++.+.+.....+
T Consensus 63 ~i~~Gei~gLlGpNGaGKSTL-l~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~ 141 (340)
T PRK13536 63 TVASGECFGLLGPNGAGKSTI-ARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRY 141 (340)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHH
Confidence 378999999999999999999 9999999999999999998764332 2456688888877666666665554432211
Q ss_pred Hhc----------CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567 217 CRS----------GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA 266 (440)
Q Consensus 217 ~~~----------~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la 266 (440)
... .-.+.+-++....-. ...+++ |++|+...++++ ...+..+....
T Consensus 142 ~~~~~~~~~~~~~~ll~~~~L~~~~~~~-~~~LS~--G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l 218 (340)
T PRK13536 142 FGMSTREIEAVIPSLLEFARLESKADAR-VSDLSG--GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL 218 (340)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhCCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 000 001111122111111 133443 667777777765 23333333333
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccce
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA 298 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~ 298 (440)
++.+.|||+++|..+.+...|+.......|+.
T Consensus 219 ~~~g~tilisSH~l~e~~~~~d~i~il~~G~i 250 (340)
T PRK13536 219 LARGKTILLTTHFMEEAERLCDRLCVLEAGRK 250 (340)
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 44699999999999877654444333333433
No 98
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=1.7e-11 Score=112.63 Aligned_cols=56 Identities=29% Similarity=0.487 Sum_probs=47.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC---Chhhhhhhcccc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF---DPSYSKALGVDV 195 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~---~~~~a~~lGv~~ 195 (440)
-||+|.++.|.||||+||||| |.++.++.+.+.|.+++++.+.. ...+++.+.+--
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTL-LS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILk 81 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTL-LSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILK 81 (252)
T ss_pred eecCCceeEEECCCCccHHHH-HHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHH
Confidence 578999999999999999999 99999999999999999987643 334676665543
No 99
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.20 E-value=5.1e-11 Score=112.69 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=87.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h----hhhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P----SYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~----~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.|||||||||| ++++++...+..|.++++++.... . .+.+.+++.+++..++...++.+.+..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 103 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTF-LKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAF 103 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHH
Confidence 478999999999999999999 999999999999999998875322 1 134567887777655554455443322
Q ss_pred ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567 213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
+.++++ .+-++...... ..++++ |++|+...++++ ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 104 PLRIIGVPPRDANERVSAALE-----KVGLEGKAHAL-PMQLSG--GEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred HHHhcCCCHHHHHHHHHHHHH-----HcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 111111 11122222222 134444 777777777766 22
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
.+..+....++.+.|||+++|..+.+.
T Consensus 176 ~l~~~l~~~~~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 176 DIMRLFEEFNRRGTTVLVATHDINLVE 202 (216)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 333333333445899999999987554
No 100
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.19 E-value=6.9e-11 Score=111.30 Aligned_cols=141 Identities=21% Similarity=0.263 Sum_probs=102.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccccceeecCCCCHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDVENLIVCQPDNGEMALEIAD 214 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~~~l~i~~~~~~ee~l~~i~ 214 (440)
-+++|+++.|.|+||+||||| ++.+.++.++..|.+.+++++..... ....+++.++.-.+++..+++|.+....
T Consensus 25 ~v~~Geiv~llG~NGaGKTTl-Lkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~ 103 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTL-LKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGA 103 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhh
Confidence 478999999999999999999 99999999998999999998765432 3345778888888888888888877543
Q ss_pred HHHhcCCcceEEEecccccCCc---------hhhcccchhhhHHHHHHHH---------------------HHHHHHHHH
Q 013567 215 RMCRSGAIDLICVDSVSALTPR---------AEIEGEIGMQQIGLQARLM---------------------SQALRKMSG 264 (440)
Q Consensus 215 ~l~~~~~~~lvVIDsl~~l~~~---------~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~ 264 (440)
...+......-.+|.+-.++|+ ..++| |++|+...+|++ .+++..++.
T Consensus 104 ~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSG--GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~ 181 (237)
T COG0410 104 YARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSG--GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181 (237)
T ss_pred hcccccccccccHHHHHHHChhHHHHhcCcccCCCh--HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHH
Confidence 3222111112225666666652 12333 777887777776 466777777
Q ss_pred HHHhcCCEEEEEeccccc
Q 013567 265 NASKAGCTLIFLNQIRYK 282 (440)
Q Consensus 265 lak~~~~tVI~inhl~~~ 282 (440)
+.++.++||+++-|....
T Consensus 182 l~~~~g~tIlLVEQn~~~ 199 (237)
T COG0410 182 LRKEGGMTILLVEQNARF 199 (237)
T ss_pred HHHcCCcEEEEEeccHHH
Confidence 777778999999998654
No 101
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=1.3e-10 Score=111.53 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=86.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.|||||||||| ++++++...+..|.++++++..... .+.+.+++.+++..++...++.+.+..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 101 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTL-LRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS 101 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHh
Confidence 478999999999999999999 9999999988899999988653321 234567777776655544454443321
Q ss_pred -----------------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567 213 -----------------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------- 255 (440)
Q Consensus 213 -----------------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------- 255 (440)
+..++.. +-++...... ..++++ |++|+...++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 102 GRLGRRSTWRSLFGLFPKEEKQRALAALER-----VGLLDKAYQR-ADQLSG--GQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred hhcccchhhhhhcccCcHHHHHHHHHHHHH-----cCChhhhCCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 1111111 1111111111 134443 777777777766
Q ss_pred -------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 -------SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 -------~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
..+...|..++++.+.|||+++|..+.+..
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 210 (241)
T cd03256 174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE 210 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 223344444445568999999999876543
No 102
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.19 E-value=6.4e-11 Score=121.34 Aligned_cols=153 Identities=16% Similarity=0.262 Sum_probs=102.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIA---- 213 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i---- 213 (440)
-+++|++++|.|||||||||| +++++++.++..|.++++++..... ...+.+|+.+++..++...++.+.+...
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTL-L~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~ 103 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTL-LRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence 467999999999999999999 9999999999999999988754322 2345688888877666655655544321
Q ss_pred -----------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 214 -----------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 214 -----------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
.+++ +.+-++.+.... ..++++ |++|+...+|++ ..+...
T Consensus 104 ~~~~~~~~~~~~~~l-----~~lgL~~~~~~~-~~~LSg--Gq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~ 175 (369)
T PRK11000 104 GAKKEEINQRVNQVA-----EVLQLAHLLDRK-PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 175 (369)
T ss_pred CCCHHHHHHHHHHHH-----HHcCChhhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1111 122233222222 245555 888888888877 223344
Q ss_pred HHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
|..+.++.+.|||+++|..+.+..+++.......|+...
T Consensus 176 L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~ 214 (369)
T PRK11000 176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (369)
T ss_pred HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 455556679999999999876655555555555555543
No 103
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.18 E-value=1.3e-10 Score=113.57 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=117.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMA-- 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~-- 209 (440)
-++.|+|+.|.|-+||||||| +++++++..+..|.+++++++.... .+.+++++.++++-+.+..++.+.
T Consensus 50 ~v~~GeIfViMGLSGSGKSTL-vR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~ 128 (386)
T COG4175 50 DVEEGEIFVIMGLSGSGKSTL-VRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVA 128 (386)
T ss_pred eecCCeEEEEEecCCCCHHHH-HHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhh
Confidence 478899999999999999999 9999999999999999999975433 156678999999888776665443
Q ss_pred -------------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567 210 -------------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------- 255 (440)
Q Consensus 210 -------------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------- 255 (440)
.+.+.+. +++|-++.....+| .+++| |++|+...||++
T Consensus 129 fGLev~Gv~~~er~~~a~~~-----l~~VgL~~~~~~yp-~eLSG--GMqQRVGLARAla~~~~IlLMDEaFSALDPLIR 200 (386)
T COG4175 129 FGLEVQGVPKAEREERALEA-----LELVGLEGYADKYP-NELSG--GMQQRVGLARALANDPDILLMDEAFSALDPLIR 200 (386)
T ss_pred cceeecCCCHHHHHHHHHHH-----HHHcCchhhhhcCc-ccccc--hHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence 2223332 45777888888886 88888 899999999987
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEE
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVR 306 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~r 306 (440)
.+.=..|..+-++++.|||||+|.-++--..-+....+.+|..+.......
T Consensus 201 ~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~e 251 (386)
T COG4175 201 TEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEE 251 (386)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHH
Confidence 233355677778899999999999764311112334455666554444333
No 104
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.18 E-value=6.8e-11 Score=111.89 Aligned_cols=136 Identities=19% Similarity=0.279 Sum_probs=85.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------h-hhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------S-YSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~-~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-+++|++++|.||||+||||| ++++++...+..|.+++++...... . +.+.+++.+++..++...++.+.+.
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 104 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTL-LNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE 104 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHH-HHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHH
Confidence 478999999999999999999 9999999999999999988653321 1 2345777777655555445544332
Q ss_pred HH---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567 212 IA---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------- 255 (440)
Q Consensus 212 ~i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------- 255 (440)
.. ..++. .+-++...... ...+++ |++|+...++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 105 LPLLLAGVPKKERRERAEELLE-----RVGLGDRLNHY-PSELSG--GQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred HHHhhcCCCHHHHHHHHHHHHH-----HcCCchhhhcC-hhhcCH--HHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 21 11111 11122211111 134443 777777777765
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
..+...|..+.++.+.|||+++|..+.+
T Consensus 177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVVVTHDPELA 204 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence 2333444444444689999999997654
No 105
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.18 E-value=1.6e-10 Score=111.16 Aligned_cols=67 Identities=19% Similarity=0.371 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h----hhhhhhcccccceeecCCCCH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P----SYSKALGVDVENLIVCQPDNG 206 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~----~~a~~lGv~~~~l~i~~~~~~ 206 (440)
=+++|++++|.|||||||||| ++++++...+..|.+++++..... . .+.+.+++.+++..++...++
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTL-LRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTV 96 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccH
Confidence 468999999999999999999 999999999999999998864321 1 134557777766544443343
No 106
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=1.3e-10 Score=109.43 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=84.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI----- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~----- 212 (440)
-+++|++++|.||||+||||| ++++.+...+..|.++++++..... ...+.+++.+++..++...++.+.+..
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 98 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTL-LNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPG 98 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccc
Confidence 578999999999999999999 9999999999999999988753221 123456776665544443344332221
Q ss_pred ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
+..+++ .+-++...... ...+++ |++++...++++ ..++..
T Consensus 99 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~ 170 (211)
T cd03298 99 LKLTAEDRQAIEVALA-----RVGLAGLEKRL-PGELSG--GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170 (211)
T ss_pred cCccHHHHHHHHHHHH-----HcCCHHHHhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 111111 11112111111 133333 666666666665 223334
Q ss_pred HHHHHHhcCCEEEEEecccccccc
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
|..+.++.++|||+++|..+.+..
T Consensus 171 l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 171 VLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHh
Confidence 444445569999999999876543
No 107
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.18 E-value=9.2e-11 Score=120.64 Aligned_cols=158 Identities=18% Similarity=0.275 Sum_probs=110.0
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--Chh--hhhhhccccccee
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--DPS--YSKALGVDVENLI 199 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--~~~--~a~~lGv~~~~l~ 199 (440)
++| |+-.+|.+- =-+++|+|++|.|.||+||||| ++++.++++|+.|.+++++.... ++. .+..+|+..|++.
T Consensus 13 ~f~-~~~And~V~-l~v~~GeIHaLLGENGAGKSTL-m~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~ 89 (501)
T COG3845 13 RFP-GVVANDDVS-LSVKKGEIHALLGENGAGKSTL-MKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFM 89 (501)
T ss_pred EcC-CEEecCcee-eeecCCcEEEEeccCCCCHHHH-HHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccc
Confidence 344 666777653 4789999999999999999999 99999999999999999998642 222 4445677666655
Q ss_pred ecCCCCHH-------------------------------------------------HHHHHHHHHHhcCCcceEEEecc
Q 013567 200 VCQPDNGE-------------------------------------------------MALEIADRMCRSGAIDLICVDSV 230 (440)
Q Consensus 200 i~~~~~~e-------------------------------------------------e~l~~i~~l~~~~~~~lvVIDsl 230 (440)
+++..|+. |-.++++.+. .+.+++++|..
T Consensus 90 Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy--r~a~iLILDEP 167 (501)
T COG3845 90 LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY--RGARLLILDEP 167 (501)
T ss_pred cccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh--cCCCEEEEcCC
Confidence 44433321 1133333332 36788999998
Q ss_pred cccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567 231 SALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA 303 (440)
Q Consensus 231 ~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a 303 (440)
++...+.+. .+.+..|. .+++.|.|||+|||--+++-..++...+.-.|+....+.
T Consensus 168 TaVLTP~E~----------------~~lf~~l~-~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 168 TAVLTPQEA----------------DELFEILR-RLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred cccCCHHHH----------------HHHHHHHH-HHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 887753332 23333333 456789999999998887776677777777777665554
No 108
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.17 E-value=1.2e-10 Score=118.70 Aligned_cols=152 Identities=18% Similarity=0.267 Sum_probs=99.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-+++|++++|.|||||||||| +++++++.++..|.++++++.... ..+.+.+++.+++..++...++.+.+.
T Consensus 19 ~i~~Gei~~l~G~nGsGKSTL-l~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 97 (354)
T TIGR02142 19 TLPGQGVTAIFGRSGSGKTTL-IRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLR 97 (354)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHH
Confidence 367999999999999999999 999999999999999998875422 123456788877766665556554443
Q ss_pred H-------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HH
Q 013567 212 I-------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQ 257 (440)
Q Consensus 212 ~-------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~ 257 (440)
. +.+++. .+-++...... ..++++ |++|+...+|++ ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~-~~~LSg--GqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~ 169 (354)
T TIGR02142 98 YGMKRARPSERRISFERVIE-----LLGIGHLLGRL-PGRLSG--GEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYE 169 (354)
T ss_pred HHhhccChhHHHHHHHHHHH-----HcCChhHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 2 111111 22223222222 245554 788888888876 23
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
++..|..+.++.+.|||+++|..+.+..+++.......|+..
T Consensus 170 l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 211 (354)
T TIGR02142 170 ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA 211 (354)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 344455555566999999999987665445544455555544
No 109
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=9.2e-11 Score=110.69 Aligned_cols=138 Identities=18% Similarity=0.287 Sum_probs=84.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI----- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~----- 212 (440)
-+++|++++|.||||+||||| ++++.+...+..|.++++++..... ...+.+++.+++..+....++.+.+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 100 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTL-LRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR 100 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc
Confidence 478999999999999999999 9999999999999999988653221 123456776665544433344333221
Q ss_pred ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
+..++. .+-++....-. ..++++ |++|+...++++ ..++..
T Consensus 101 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~ 172 (213)
T cd03259 101 GVPKAEIRARVRELLE-----LVGLEGLLNRY-PHELSG--GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172 (213)
T ss_pred CCCHHHHHHHHHHHHH-----HcCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 111111 11122111111 134443 677777777765 223333
Q ss_pred HHHHHHhcCCEEEEEecccccccc
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
|..+.++.+.|||+++|..+.+..
T Consensus 173 l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 173 LKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred HHHHHHHcCCEEEEEecCHHHHHH
Confidence 444444568999999999765443
No 110
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=1.5e-10 Score=109.95 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMALEI---- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~l~~---- 212 (440)
-+.+|++++|.|+||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..+....++.+.+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 100 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTT-IKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARL 100 (220)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHH
Confidence 567999999999999999999 999999999999999998865322 1234557777776554444444333321
Q ss_pred -----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HHHH
Q 013567 213 -----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QALR 260 (440)
Q Consensus 213 -----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~l~ 260 (440)
+..++. .+-++...... ..++++ |++|+...++++ . ....
T Consensus 101 ~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 172 (220)
T cd03265 101 YGVPGAERRERIDELLD-----FVGLLEAADRL-VKTYSG--GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172 (220)
T ss_pred cCCCHHHHHHHHHHHHH-----HcCCHHHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 111111 11122211111 134443 666766666665 2 2333
Q ss_pred HHHHHHHhcCCEEEEEecccccccc
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
.|..+.++.+.+||+++|..+.+..
T Consensus 173 ~l~~~~~~~~~tvi~~tH~~~~~~~ 197 (220)
T cd03265 173 YIEKLKEEFGMTILLTTHYMEEAEQ 197 (220)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 3444445568999999999875543
No 111
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.16 E-value=1.2e-10 Score=116.16 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=89.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l 216 (440)
-+++|++++|.||||+||||| ++++.+...+..|.+++++...... .+.+.+|+.+++..+....++.+.+......
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 104 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTI-ARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRY 104 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHH
Confidence 478999999999999999999 9999999999999999988653222 2345678887776555555555443321110
Q ss_pred Hh-------c---CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567 217 CR-------S---GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA 266 (440)
Q Consensus 217 ~~-------~---~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la 266 (440)
.. . .-.+.+-++...... ...+++ |++|+...++++ ...+..+....
T Consensus 105 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 181 (303)
T TIGR01288 105 FGMSTREIEAVIPSLLEFARLESKADVR-VALLSG--GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL 181 (303)
T ss_pred cCCCHHHHHHHHHHHHHHCCChhHhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 00 0 001111122111111 134444 777777777766 23333333333
Q ss_pred HhcCCEEEEEeccccccccccC
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~ 288 (440)
++.+.|||+++|..+.+...++
T Consensus 182 ~~~g~til~~sH~~~~~~~~~d 203 (303)
T TIGR01288 182 LARGKTILLTTHFMEEAERLCD 203 (303)
T ss_pred HhCCCEEEEECCCHHHHHHhCC
Confidence 4468999999999876654443
No 112
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=1.2e-10 Score=110.60 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=83.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIA----- 213 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i----- 213 (440)
-|++|++++|.|||||||||| ++++.+...+..|.+++++..... +.+.+++.+++..++...++.+.+...
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 102 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTL-LRIIAGLERPTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG 102 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcC
Confidence 477999999999999999999 999999998889999998764321 234566666655444444444433211
Q ss_pred ----------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HHHHHH
Q 013567 214 ----------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QALRKM 262 (440)
Q Consensus 214 ----------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~l~~L 262 (440)
..+++ .+-++...... ...+++ |++|+...++++ . .++..|
T Consensus 103 ~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l 174 (220)
T cd03293 103 VPKAEARERAEELLE-----LVGLSGFENAY-PHQLSG--GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174 (220)
T ss_pred CCHHHHHHHHHHHHH-----HcCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 11111 11112111111 133443 667777777765 2 233334
Q ss_pred HHHHHhcCCEEEEEecccccccc
Q 013567 263 SGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 263 ~~lak~~~~tVI~inhl~~~ig~ 285 (440)
..+.++.+.|||+++|..+.+..
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 175 LDIWRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred HHHHHHcCCEEEEEecCHHHHHH
Confidence 44445668999999999875543
No 113
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.16 E-value=1.7e-10 Score=108.33 Aligned_cols=137 Identities=17% Similarity=0.224 Sum_probs=83.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhccccccee-ecCCCCHHHHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLI-VCQPDNGEMALEI----- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~-i~~~~~~ee~l~~----- 212 (440)
-+++|++++|.|||||||||| ++++++...+..|.++++++......+.+.+++.+++.. .....++.+.+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~ 100 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTL-AKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL 100 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc
Confidence 478999999999999999999 999999999999999998875433334456777666531 1112233332221
Q ss_pred ------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567 213 ------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA 266 (440)
Q Consensus 213 ------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la 266 (440)
+.++++. +-++....-. ..++++ |++|+...+|++ .+.+..+....
T Consensus 101 ~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 172 (205)
T cd03226 101 DAGNEQAETVLKD-----LDLYALKERH-PLSLSG--GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL 172 (205)
T ss_pred CccHHHHHHHHHH-----cCCchhcCCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 1122211 1122211111 134443 677777777765 23333333333
Q ss_pred HhcCCEEEEEeccccccc
Q 013567 267 SKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig 284 (440)
++.+.|||+++|..+.+.
T Consensus 173 ~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 173 AAQGKAVIVITHDYEFLA 190 (205)
T ss_pred HHCCCEEEEEeCCHHHHH
Confidence 345899999999987554
No 114
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=3.2e-10 Score=103.74 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=86.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHH-------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMA------- 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~------- 209 (440)
=+++|+++.|.|+||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..+....++.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTL-IKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 468999999999999999999 999999998889999998865432 2334567777777655544444433
Q ss_pred ---HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 210 ---LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 210 ---l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
+.+++.+. .+++++++|....-.... ..+.+.+. |..+.++ +.|||+++|....+.
T Consensus 101 ~qrv~laral~--~~p~illlDEPt~~LD~~-------------~~~~l~~~---l~~~~~~-g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALL--HDPELLILDEPTSGLDPE-------------SRREFWEL---LRELKKE-GKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHH--cCCCEEEEeCCccCCCHH-------------HHHHHHHH---HHHHHHC-CCEEEEECCCHHHHH
Confidence 23344443 478999999987766311 11122333 3334444 899999999876543
No 115
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.15 E-value=1.4e-10 Score=119.86 Aligned_cols=155 Identities=18% Similarity=0.171 Sum_probs=98.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHHH---
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALEI--- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~~--- 212 (440)
-+++|++++|.||||+||||| ++++.++.++..|.++++++.... ..+++++|+.+++..+....++.+.+..
T Consensus 25 ~i~~Geiv~liGpNGaGKSTL-Lk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~ 103 (402)
T PRK09536 25 SVREGSLVGLVGPNGAGKTTL-LRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRT 103 (402)
T ss_pred EECCCCEEEEECCCCchHHHH-HHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccc
Confidence 478999999999999999999 999999999999999999876443 2356678887776554434444333221
Q ss_pred ----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567 213 ----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S 256 (440)
Q Consensus 213 ----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~ 256 (440)
+..+++ .+-+..+..-. ..++++ |++|+...+|++ .
T Consensus 104 ~~~~~~~~~~~~~~~~v~~~le-----~vgl~~~~~~~-~~~LSg--GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~ 175 (402)
T PRK09536 104 PHRSRFDTWTETDRAAVERAME-----RTGVAQFADRP-VTSLSG--GERQRVLLARALAQATPVLLLDEPTASLDINHQ 175 (402)
T ss_pred hhcccccCCCHHHHHHHHHHHH-----HcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 111111 11121111111 134444 777777777776 2
Q ss_pred HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~ 302 (440)
..++.+...+.+.+.|||+++|..+.+...++.......|+.+...
T Consensus 176 ~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 176 VRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 2333333333346899999999988776556655556666655443
No 116
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.14 E-value=3.1e-10 Score=105.85 Aligned_cols=123 Identities=22% Similarity=0.227 Sum_probs=83.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE----- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~----- 211 (440)
=+++|++++|.||||+||||| ++++++.. .+..|.++++++......+.+.+++.+++..++...++.+.+.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStL-l~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~ 109 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTL-LNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL 109 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence 478999999999999999999 99999999 8889999999875443334456777777655554445444322
Q ss_pred ------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567 212 ------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI 279 (440)
Q Consensus 212 ------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl 279 (440)
+++.++ .+++++++|....-.... . .+.+.+.++ .+ ++.+.|||+++|.
T Consensus 110 ~~LS~G~~qrv~laral~--~~p~illlDEP~~~LD~~------------~-~~~l~~~l~---~~-~~~~~tiii~sh~ 170 (194)
T cd03213 110 RGLSGGERKRVSIALELV--SNPSLLFLDEPTSGLDSS------------S-ALQVMSLLR---RL-ADTGRTIICSIHQ 170 (194)
T ss_pred ccCCHHHHHHHHHHHHHH--cCCCEEEEeCCCcCCCHH------------H-HHHHHHHHH---HH-HhCCCEEEEEecC
Confidence 222222 367899999877655310 1 112223332 33 3358999999998
Q ss_pred cc
Q 013567 280 RY 281 (440)
Q Consensus 280 ~~ 281 (440)
..
T Consensus 171 ~~ 172 (194)
T cd03213 171 PS 172 (194)
T ss_pred ch
Confidence 74
No 117
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.14 E-value=1.9e-10 Score=108.20 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=52.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-hhhhhhhcccccceeecCCCCHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-PSYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
-+++|+++.|.||||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..+....++.+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 92 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTT-MKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAREN 92 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHH
Confidence 467999999999999999999 999999999999999998875432 2234457777766555444454443
No 118
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=3.6e-10 Score=108.09 Aligned_cols=138 Identities=19% Similarity=0.278 Sum_probs=85.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-|++|++++|.|||||||||| ++++++...+..|.++++++..... .+.+.+++.+++..++...++.+.+..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~ 105 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTL-IRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL 105 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHH
Confidence 478999999999999999999 9999999999999999988754321 124567777777655544454443321
Q ss_pred H---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567 213 A---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 213 i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
. ..+++ .+-++...... ...+++ |++|+...++++ ..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 106 PLEIAGVPKAEIEERVLELLE-----LVGLEDKADAY-PAQLSG--GQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred HHHHcCCCHHHHHHHHHHHHH-----HCCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 1 11111 11122111111 133443 666776667665 22
Q ss_pred -HHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 258 -ALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 258 -~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
+...|..+.++.+.|||+++|..+.+..
T Consensus 178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~ 206 (233)
T cd03258 178 SILALLRDINRELGLTIVLITHEMEVVKR 206 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 3333444445568999999999775543
No 119
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.13 E-value=1.4e-10 Score=109.69 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=53.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
-+++|++++|.|+||+||||| ++++.+...+..|.+++++..... ..+.+.+++.+++..++...++.+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTT-LRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 478999999999999999999 999999999999999998865332 1234567877777655554455443
No 120
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=1.7e-10 Score=119.05 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=100.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-h----hhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-S----YSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~----~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-+++|++++|.|||||||||| ++++.++..+..|.++++++.... . . +.+.+|+.+++..++...++.+.+.
T Consensus 50 ~i~~Gei~~LvG~NGsGKSTL-Lr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~ 128 (400)
T PRK10070 50 AIEEGEIFVIMGLSGSGKSTM-VRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTA 128 (400)
T ss_pred EEcCCCEEEEECCCCchHHHH-HHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHH
Confidence 478999999999999999999 999999999999999999875432 1 1 1246888888776666556655443
Q ss_pred HHHHHH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567 212 IADRMC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR 260 (440)
Q Consensus 212 ~i~~l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~ 260 (440)
....+. . ..-.+.+-++....-.+ .++++ |++|+...+|++ ..+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-~~LSg--Gq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~ 205 (400)
T PRK10070 129 FGMELAGINAEERREKALDALRQVGLENYAHSYP-DELSG--GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQD 205 (400)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-ccCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 211100 0 00012222333222222 45555 888888888877 23333
Q ss_pred HHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
.|..+.++.+.|||+++|..+.+..+++.......|+..
T Consensus 206 ~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~ 244 (400)
T PRK10070 206 ELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244 (400)
T ss_pred HHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 444444567999999999987665444444445555543
No 121
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.13 E-value=1.9e-10 Score=108.52 Aligned_cols=137 Identities=20% Similarity=0.263 Sum_probs=84.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.|||||||||| ++++++...+..|.++++++..... .+.+.+++.+++..++...++.+.+..
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~ 101 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTL-LKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF 101 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHH
Confidence 467999999999999999999 9999999999999999988754321 134567777776555544444433221
Q ss_pred ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567 213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
+..++.. +-++...... ..++++ |++|+...++++ .+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 173 (214)
T cd03292 102 ALEVTGVPPREIRKRVPAALEL-----VGLSHKHRAL-PAELSG--GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173 (214)
T ss_pred HHHHcCCCHHHHHHHHHHHHHH-----cCCHHHhhCC-hhhcCH--HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 1111111 1112111111 133443 667776666665 22
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
.+..+....++.+.|||+++|....+.
T Consensus 174 ~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 174 EIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 333333333345899999999876554
No 122
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=2.3e-10 Score=107.71 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
+.+|++++|.|||||||||| ++++++...+..|.++++++.... .+.+.+++.+++..+....++.+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~ 90 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTT-IRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQ 90 (210)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHH
Confidence 67999999999999999999 999999999999999998864322 334456766666544444444443
No 123
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.13 E-value=2.6e-10 Score=107.50 Aligned_cols=138 Identities=16% Similarity=0.257 Sum_probs=83.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI----- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~----- 212 (440)
-+++|++++|.||||+||||| ++++++...+..|.++++++..... ...+.+++.+++..+....++.+.+..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 100 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTT-LRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR 100 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc
Confidence 478999999999999999999 9999999989999999988653221 122456666665444433344333221
Q ss_pred ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
+..+++ .+-++...... ..++++ |++|+...++++ ..++..
T Consensus 101 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 172 (213)
T cd03301 101 KVPKDEIDERVREVAE-----LLQIEHLLDRK-PKQLSG--GQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE 172 (213)
T ss_pred CCCHHHHHHHHHHHHH-----HcCCHHHHhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 111111 11122111111 133333 666666666665 223334
Q ss_pred HHHHHHhcCCEEEEEecccccccc
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
|..+.++.+.|||+++|..+.+..
T Consensus 173 l~~~~~~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 173 LKRLQQRLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHH
Confidence 444445568999999999865543
No 124
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.13 E-value=2.1e-10 Score=108.40 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=84.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI----- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~----- 212 (440)
-+.+|++++|.||||+||||| ++++.+...+..|.+++++...... .+.+.+++.+++..++...++.+.+..
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~ 98 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTL-LNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPG 98 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhcc
Confidence 467999999999999999999 9999999999999999988754321 234557777766555444444332221
Q ss_pred ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
+.++++ .+-++...... ..++++ |++++...++++ ..++..
T Consensus 99 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 170 (213)
T TIGR01277 99 LKLNAEQQEKVVDAAQ-----QVGIADYLDRL-PEQLSG--GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170 (213)
T ss_pred CCccHHHHHHHHHHHH-----HcCcHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 111111 11122111111 133333 666666666665 223333
Q ss_pred HHHHHHhcCCEEEEEeccccccc
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig 284 (440)
|..+.++.+.|||+++|..+.+.
T Consensus 171 l~~~~~~~~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 171 VKQLCSERQRTLLMVTHHLSDAR 193 (213)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHH
Confidence 44444456899999999987553
No 125
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.12 E-value=2.1e-10 Score=108.31 Aligned_cols=138 Identities=18% Similarity=0.211 Sum_probs=84.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.|||||||||| ++++.+...+..|.+++++...... .+.+.+++.+++..++...++.+.+..
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTL-LKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL 102 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHH
Confidence 578999999999999999999 9999999988999999988654321 134567777766554444444333221
Q ss_pred ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567 213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
+.++++..+ ++...... ..++++ |++|+...++++ ..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 174 (214)
T TIGR02673 103 PLEVRGKKEREIQRRVGAALRQVG-----LEHKADAF-PEQLSG--GEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE 174 (214)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcC-----ChhhhhCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 111111111 11111111 133443 666776666665 23
Q ss_pred HHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
.+.++....++.+.|||+++|..+.+..
T Consensus 175 ~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 175 RILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 3333333334468999999999875543
No 126
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.12 E-value=3.1e-10 Score=106.97 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=52.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.||||+||||| ++++++...+..|.+++++..... ..+.+.+++.+++..++...++.+
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 95 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTL-LRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLE 95 (213)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHH
Confidence 467999999999999999999 999999999999999998865421 123456777777655544444433
No 127
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=4.3e-10 Score=113.42 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=100.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhccccccee--ecCCCCHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENLI--VCQPDNGEMAL 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l~--i~~~~~~ee~l 210 (440)
=|++|++++|+|+|||||||| ++++.++..+..|.++++++..... .+.+.+++.+++.. +.+..++.+.+
T Consensus 37 ~i~~Ge~~~IvG~sGsGKSTL-l~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l 115 (327)
T PRK11308 37 TLERGKTLAVVGESGCGKSTL-ARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQIL 115 (327)
T ss_pred EECCCCEEEEECCCCCcHHHH-HHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHH
Confidence 367999999999999999999 8999999988899999998764321 13345777776642 22222332221
Q ss_pred ----------------HHHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567 211 ----------------EIADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 211 ----------------~~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------------ 255 (440)
..+.++++.-+ ++ .....++ .++++ |++|+...++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~~~g-----L~~~~~~~~p-~~LSg--Gq~QRv~iArAL~~~P~lLilDEPts~LD~ 187 (327)
T PRK11308 116 EEPLLINTSLSAAERREKALAMMAKVG-----LRPEHYDRYP-HMFSG--GQRQRIAIARALMLDPDVVVADEPVSALDV 187 (327)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHCC-----CChHHhcCCC-ccCCH--HHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence 22233332222 22 1222232 56665 888888888887
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~ 302 (440)
.+++..|..+.++.++|||+|+|....+..+++.......|+.....
T Consensus 188 ~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 188 SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 34555566666667999999999988765555555555566665443
No 128
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=3.7e-10 Score=108.60 Aligned_cols=138 Identities=22% Similarity=0.324 Sum_probs=83.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI----- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~----- 212 (440)
-+++|++++|.||||+||||| ++++.+...+..|.+++++...... ...+.+++.+++..++...++.+.+..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 102 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTL-LRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVK 102 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhc
Confidence 467999999999999999999 9999999988899999987643221 123456666666544444444333221
Q ss_pred --------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHH
Q 013567 213 --------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQA 258 (440)
Q Consensus 213 --------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~ 258 (440)
+..+++ .+-++....-. ..++++ |++|+...++++ .+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (239)
T cd03296 103 PRSERPPEAEIRAKVHELLK-----LVQLDWLADRY-PAQLSG--GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 174 (239)
T ss_pred cccccCCHHHHHHHHHHHHH-----HcCChhhhhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 111111 11112111111 133443 677777777765 223
Q ss_pred H-HHHHHHHHhcCCEEEEEecccccccc
Q 013567 259 L-RKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 259 l-~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
+ ..|..+.++.+.|||+++|..+.+..
T Consensus 175 l~~~l~~~~~~~~~tvii~sH~~~~~~~ 202 (239)
T cd03296 175 LRRWLRRLHDELHVTTVFVTHDQEEALE 202 (239)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 3 33344444458999999999765443
No 129
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.12 E-value=4.5e-10 Score=107.61 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMALEIAD 214 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l~~i~ 214 (440)
=+++|++++|.|||||||||| ++++.+...+..|.+++++...... .+ ...+++.+++..++...++.+.+....
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~ 100 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTL-FNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAA 100 (236)
T ss_pred EecCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHH
Confidence 467999999999999999999 9999999988899999988653221 12 234677777665555445544332211
Q ss_pred HHH-----------------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-------------------
Q 013567 215 RMC-----------------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------- 255 (440)
Q Consensus 215 ~l~-----------------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------- 255 (440)
... . ..-.+.+-++...... ..++++ |++|+...++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~ 177 (236)
T cd03219 101 QARTGSGLLLARARREEREARERAEELLERVGLADLADRP-AGELSY--GQQRRLEIARALATDPKLLLLDEPAAGLNPE 177 (236)
T ss_pred hhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 000 0 0001111222211111 234444 777777777766
Q ss_pred -HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 -SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 -~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
...+..+....++.+.|||+++|..+.+..
T Consensus 178 ~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 208 (236)
T cd03219 178 ETEELAELIRELRERGITVLLVEHDMDVVMS 208 (236)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 223333333333368999999999876543
No 130
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.12 E-value=3.4e-10 Score=110.99 Aligned_cols=143 Identities=21% Similarity=0.245 Sum_probs=87.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h----hhhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P----SYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~----~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
=+++|++++|.||||+||||| ++++++...+..|.++++++.... . .+.+.+++.+++..++...++.+.+..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~ 107 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTL-LRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY 107 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHH
Confidence 478999999999999999999 999999999999999998864321 1 123457777777655554455444322
Q ss_pred HHHHHh-----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567 213 ADRMCR-----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR 260 (440)
Q Consensus 213 i~~l~~-----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~ 260 (440)
...... ..-.+.+-++...... ..++++ |++|+...++++ ..++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 184 (269)
T PRK11831 108 PLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-PSELSG--GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK 184 (269)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 100000 0001112222222222 134444 777777777766 22333
Q ss_pred HHHHHHHhcCCEEEEEecccccccc
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
.|..+.++.+.|||+++|....+..
T Consensus 185 ~l~~~~~~~g~tiiivsH~~~~~~~ 209 (269)
T PRK11831 185 LISELNSALGVTCVVVSHDVPEVLS 209 (269)
T ss_pred HHHHHHHhcCcEEEEEecCHHHHHH
Confidence 4444445558999999999765544
No 131
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.12 E-value=4.7e-10 Score=107.18 Aligned_cols=138 Identities=16% Similarity=0.213 Sum_probs=84.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHHHHH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMALEIA- 213 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l~~i- 213 (440)
-+++|++++|.|||||||||| ++++++...+..|.++++++..... .+ .+.+++.+++..++...++.+.+...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 100 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTT-FYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVL 100 (232)
T ss_pred EecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHH
Confidence 467999999999999999999 9999999999999999988754321 12 23577777665554444444433221
Q ss_pred --------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHH
Q 013567 214 --------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQAL 259 (440)
Q Consensus 214 --------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l 259 (440)
..++. .+-++....-. ..++++ |++|+...++++ .+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~ 172 (232)
T cd03218 101 EIRGLSKKEREEKLEELLE-----EFHITHLRKSK-ASSLSG--GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172 (232)
T ss_pred HhcCCCHHHHHHHHHHHHH-----HcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 11111 11122111111 133333 666666666665 2233
Q ss_pred HHHHHHHHhcCCEEEEEecccccccc
Q 013567 260 RKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 260 ~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
..+.....+.+.|||+++|..+.+..
T Consensus 173 ~~~l~~~~~~~~tii~~sH~~~~~~~ 198 (232)
T cd03218 173 QKIIKILKDRGIGVLITDHNVRETLS 198 (232)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 33333334468999999999865544
No 132
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.11 E-value=1.8e-10 Score=114.81 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=96.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l 216 (440)
-+++|++++|.||||+||||| ++++.+...+..|.+++++...... ...+.+|+.+++..++...++.+.+.....+
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTL-l~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~ 102 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTT-MKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI 102 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 478999999999999999999 9999999999999999998754332 2445688888876666555665554432211
Q ss_pred Hh----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567 217 CR----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA 266 (440)
Q Consensus 217 ~~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la 266 (440)
.. ..-.+.+-++....-. ...+++ |++|+...++++ .+.++.+....
T Consensus 103 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~ 179 (301)
T TIGR03522 103 YGMKGQLLKQRVEEMIELVGLRPEQHKK-IGQLSK--GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI 179 (301)
T ss_pred cCCCHHHHHHHHHHHHHHCCCchHhcCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh
Confidence 00 0001112222221111 133443 677777777766 23344444444
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccce
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA 298 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~ 298 (440)
++ +.|||+++|..+.+...++.......|+.
T Consensus 180 ~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 180 GK-DKTIILSTHIMQEVEAICDRVIIINKGKI 210 (301)
T ss_pred cC-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 44 69999999999877655544334434443
No 133
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=3.1e-10 Score=109.01 Aligned_cols=60 Identities=28% Similarity=0.391 Sum_probs=51.3
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----hhhhhhhcccccce
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----PSYSKALGVDVENL 198 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----~~~a~~lGv~~~~l 198 (440)
-.+++|+.+.|+|+|||||||| +++++++.++..|.+++++..... ..+.+++|+.++|-
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL-~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnp 88 (235)
T COG1122 25 LEIEKGERVLLIGPNGSGKSTL-LKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNP 88 (235)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECc
Confidence 5789999999999999999999 999999999999999999887552 23677788887654
No 134
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.11 E-value=4.7e-10 Score=117.97 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=107.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------hhhhhccccccee--ecCCCCHHHHH-
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------YSKALGVDVENLI--VCQPDNGEMAL- 210 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~a~~lGv~~~~l~--i~~~~~~ee~l- 210 (440)
+.+|++++|+|++||||||| .+++.++..+.+|.+.+++.+ .+.. ..+++-+.+++-+ +.+..++.+++
T Consensus 314 l~~GE~lglVGeSGsGKSTl-ar~i~gL~~P~~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ 391 (539)
T COG1123 314 LREGETLGLVGESGSGKSTL-ARILAGLLPPSSGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILA 391 (539)
T ss_pred ecCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEEeCcc-cccccchhhhhhhheEEEEeCcccccCccccHHHHHH
Confidence 68999999999999999999 899999999999999998876 2221 2223333333322 12222333322
Q ss_pred ---------------HHHHHHHhcCCcceEEEec-ccccCCchhhcccchhhhHHHHHHHH-------------------
Q 013567 211 ---------------EIADRMCRSGAIDLICVDS-VSALTPRAEIEGEIGMQQIGLQARLM------------------- 255 (440)
Q Consensus 211 ---------------~~i~~l~~~~~~~lvVIDs-l~~l~~~~el~~~~g~~q~~~~ar~l------------------- 255 (440)
+.+..++. +|-++. +...+| .+++| |++|+...||++
T Consensus 392 epL~~~~~~~~~~~~~rv~~ll~-----~VgL~~~~l~ryP-~elSG--GQrQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 392 EPLRIHGGGSGAERRARVAELLE-----LVGLPPEFLDRYP-HELSG--GQRQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred hHHhhhcccchHHHHHHHHHHHH-----HcCCCHHHHhcCc-hhcCc--chhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 12222222 333333 344454 78887 999999999987
Q ss_pred --HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567 256 --SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA 303 (440)
Q Consensus 256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a 303 (440)
.++++.|+.+-++.|+|.|||+|+...+..+|+...++..|++++...
T Consensus 464 vqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 464 VQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence 578888899999999999999999998887777777777777766663
No 135
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=5.2e-10 Score=102.82 Aligned_cols=127 Identities=19% Similarity=0.324 Sum_probs=84.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEMA---- 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee~---- 209 (440)
=+++|++++|.||||+||||| ++++.+...+..|.+++++..... ..+.+.+++.+++..+....+..+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTL-LRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 468999999999999999999 999999998889999998864322 1244567777766554444344332
Q ss_pred --------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 210 --------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 210 --------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
+.+++.++ .+++++++|....-.... . . ...+..|..+.++.+.|+|+++|..+
T Consensus 101 lS~G~~qr~~la~al~--~~p~llilDEP~~~LD~~------------~-~---~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 101 LSGGQQQRVALARALA--MDPDVLLLDEPTSALDPI------------T-R---REVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred CCHHHHHHHHHHHHHH--CCCCEEEEeCCcccCCHH------------H-H---HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 22344443 368899999877655311 1 1 12222233344445899999999987
Q ss_pred ccc
Q 013567 282 KIG 284 (440)
Q Consensus 282 ~ig 284 (440)
.+.
T Consensus 163 ~~~ 165 (178)
T cd03229 163 EAA 165 (178)
T ss_pred HHH
Confidence 554
No 136
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.11 E-value=4.9e-10 Score=113.17 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=100.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccce--eecCCCCHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENL--IVCQPDNGEMAL 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l--~i~~~~~~ee~l 210 (440)
=|.+|++++|+|+|||||||| ++++.++..+..|.++++++..... .+.+.+++.+++. .+.+..++.+.+
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTL-lk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i 121 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTF-ARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEII 121 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHH
Confidence 368999999999999999999 8999999999999999998865432 1234678877764 233334443332
Q ss_pred H-----------------HHHHHHhcCCcceEEE-ecccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567 211 E-----------------IADRMCRSGAIDLICV-DSVSALTPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 211 ~-----------------~i~~l~~~~~~~lvVI-Dsl~~l~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
. .+.++++ .+-+ +.+...++ .++++ |++|+...++++
T Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~~l~-----~vgl~~~~~~~~p-~~LSg--G~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 122 AEPLRTYHPKLSRQEVKDRVKAMML-----KVGLLPNLINRYP-HEFSG--GQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHH-----HcCCChHHhcCCc-ccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 2 1122222 2222 12222332 56665 888888888887
Q ss_pred ----HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 256 ----SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 256 ----~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
.+++..|..+.++.+.|||+++|....+..+++.......|+.+..
T Consensus 194 ~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 194 VSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 3445555555566799999999998866555555555555555443
No 137
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.11 E-value=5.3e-10 Score=100.83 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=96.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--Chh-----hhhhhcccccceeecCCCCHHHHH--
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--DPS-----YSKALGVDVENLIVCQPDNGEMAL-- 210 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--~~~-----~a~~lGv~~~~l~i~~~~~~ee~l-- 210 (440)
+.+|+-+.|+||+||||||| +-+++++-.+.++.+++.+..-. +.. +.+++|+.++.+.+++..+..|..
T Consensus 33 v~~Ge~vaiVG~SGSGKSTL-l~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTL-LAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred ecCCceEEEEcCCCCcHHhH-HHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 68999999999999999999 99999999999999999887533 222 567899999999887766544332
Q ss_pred -------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567 211 -------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S 256 (440)
Q Consensus 211 -------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~ 256 (440)
..+..++.. |-+-.-...+| .+++| |++|+...+|++ .
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~-----vGLg~Rl~HyP-~qLSG--GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~ 183 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEA-----VGLGKRLTHYP-AQLSG--GEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHH-----hCcccccccCc-cccCc--hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence 223333221 22222222333 56666 778888888876 3
Q ss_pred HHHHHHHHHHHhcCCEEEEEecccc
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
++..-|-.+.++.|.|.|+++|+..
T Consensus 184 ~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 184 KIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred HHHHHHHHHhhhcCceEEEEeCCHH
Confidence 5556667778899999999999864
No 138
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=6.1e-10 Score=106.67 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=86.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h---h-hhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S---Y-SKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~---~-a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
=+++|++++|.|||||||||| ++++++...+..|.++++++..... . + .+.+++.+++..+++..++.+.+.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 109 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTL-LHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVA 109 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHH
Confidence 478999999999999999999 9999999999999999998754321 1 1 245788787765555445544332
Q ss_pred H---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567 212 I---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S 256 (440)
Q Consensus 212 ~---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~ 256 (440)
. +.++++ .+-++....-. ..++++ |++|+...++++ .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LSg--G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 110 MPLLIGKKKPAEINSRALEMLA-----AVGLEHRANHR-PSELSG--GERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred HHHHhcCCCHHHHHHHHHHHHH-----HcCCchhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 2 111111 12222222111 134444 777777777765 2
Q ss_pred HHHHH-HHHHHHhcCCEEEEEeccccccc
Q 013567 257 QALRK-MSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 257 ~~l~~-L~~lak~~~~tVI~inhl~~~ig 284 (440)
+.+.. |..+.++.+.|||+++|..+.+.
T Consensus 182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 182 DSIFQLLGELNRLQGTAFLVVTHDLQLAK 210 (233)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 23333 33333446899999999987543
No 139
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.11 E-value=9.1e-10 Score=100.75 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=84.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHH-------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEM------- 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee------- 208 (440)
=+++|++++|.||||+||||| ++++.+...+..|.++++++..... .+.+.+++.+++..++.. ++.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~lLS~G~ 101 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTL-ARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENILSGGQ 101 (173)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHCcCHHH
Confidence 467999999999999999999 9999999999999999988754321 244567787777655542 4432
Q ss_pred --HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 209 --ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 209 --~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
-+.+++.++ .+++++++|....-.... ..+.+.+.+ ..+ ++.+.|||+++|..+.+
T Consensus 102 ~qrv~la~al~--~~p~~lllDEPt~~LD~~-------------~~~~l~~~l---~~~-~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 102 RQRLGLARALY--GNPRILVLDEPNSHLDVE-------------GERALNQAI---AAL-KAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHh--cCCCEEEEECCccccCHH-------------HHHHHHHHH---HHH-HhCCCEEEEEeCCHHHH
Confidence 233444443 368899999887665311 011223333 333 34589999999987644
No 140
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.10 E-value=4.6e-10 Score=109.46 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=82.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHH-------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE------- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~------- 211 (440)
-+++|++++|.||||+||||| ++++.+...+..|.+++++... ..+.+.+++.+++..++...++.+.+.
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 110 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTL-LRLLAGLETPSAGELLAGTAPL--AEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW 110 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEH--HHhhCceEEEecCccCCCCCcHHHHHHhcccchH
Confidence 478999999999999999999 9999999998889888876432 123345666666554444334433322
Q ss_pred --HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHh
Q 013567 212 --IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASK 268 (440)
Q Consensus 212 --~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~ 268 (440)
.+..++...+ ++....-. ...+++ |++|+...++++ ..+...|..+.++
T Consensus 111 ~~~~~~~l~~~g-----l~~~~~~~-~~~LSg--Gqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 182 (257)
T PRK11247 111 RDAALQALAAVG-----LADRANEW-PAALSG--GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ 182 (257)
T ss_pred HHHHHHHHHHcC-----ChhHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1112222111 11111111 133443 666666666665 2233344444556
Q ss_pred cCCEEEEEecccccccc
Q 013567 269 AGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 269 ~~~tVI~inhl~~~ig~ 285 (440)
.+.|||+++|..+.+..
T Consensus 183 ~~~tviivsHd~~~~~~ 199 (257)
T PRK11247 183 HGFTVLLVTHDVSEAVA 199 (257)
T ss_pred cCCEEEEEeCCHHHHHH
Confidence 78999999999875543
No 141
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.10 E-value=3.4e-10 Score=108.86 Aligned_cols=140 Identities=20% Similarity=0.290 Sum_probs=85.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-----hhhhhhcccccceeecCCCCHHHHHHH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-----SYSKALGVDVENLIVCQPDNGEMALEI- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-----~~a~~lGv~~~~l~i~~~~~~ee~l~~- 212 (440)
-+++|++++|.|+||+||||| ++++.+...+..|.+++++...... .+.+.+++.+++..+....++.+.+..
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 101 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTL-LRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG 101 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhH
Confidence 468999999999999999999 9999999999999999998754321 234557777766554444444333221
Q ss_pred ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567 213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
+.++++ .+-++...... ...+++ |++++...++++ ..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 173 (240)
T PRK09493 102 PLRVRGASKEEAEKQARELLA-----KVGLAERAHHY-PSELSG--GQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173 (240)
T ss_pred HHHhcCCCHHHHHHHHHHHHH-----HcCChHHHhcC-hhhcCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 111111 11122211111 133333 666666666665 23
Q ss_pred HHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYY 287 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~ 287 (440)
.+..+...+++.+.|||+++|..+.+...+
T Consensus 174 ~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 203 (240)
T PRK09493 174 EVLKVMQDLAEEGMTMVIVTHEIGFAEKVA 203 (240)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 333333333456899999999987654433
No 142
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=2.5e-10 Score=112.52 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=86.6
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhccccccee-ecCCCCHHHHHH--
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLI-VCQPDNGEMALE-- 211 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~-i~~~~~~ee~l~-- 211 (440)
=-|++|++++|.|+|||||||| ++++.++..+..|.++++++..... .+.+.+|+.+++.. .+...++.+.+.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~ 106 (279)
T PRK13650 28 FHVKQGEWLSIIGHNGSGKSTT-VRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG 106 (279)
T ss_pred EEEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhh
Confidence 3578999999999999999999 9999999999999999998764321 24556788777642 222233333222
Q ss_pred -------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HH
Q 013567 212 -------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQ 257 (440)
Q Consensus 212 -------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~ 257 (440)
.+.++++ .+-++......+ .++++ |++|+...++++ ..
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~LSg--Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 178 (279)
T PRK13650 107 LENKGIPHEEMKERVNEALE-----LVGMQDFKEREP-ARLSG--GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178 (279)
T ss_pred HHhCCCCHHHHHHHHHHHHH-----HCCCHhHhhCCc-ccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 1122222 111222222221 34443 677777777765 23
Q ss_pred HHHHHHHHHHhcCCEEEEEecccccc
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
++..|..+.++.|.|||+++|..+.+
T Consensus 179 l~~~l~~l~~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 179 LIKTIKGIRDDYQMTVISITHDLDEV 204 (279)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 44445555555699999999998755
No 143
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.10 E-value=3.3e-10 Score=107.76 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC------hhhhhhhcccccce--eecCCCCHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD------PSYSKALGVDVENL--IVCQPDNGEMAL 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~------~~~a~~lGv~~~~l--~i~~~~~~ee~l 210 (440)
-+++|++++|.||||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++. .+....++.+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl 105 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTL-ARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI 105 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHH
Confidence 578999999999999999999 999999999999999998875432 12345677777665 233334444433
Q ss_pred HHHHHHH---------hc---CCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567 211 EIADRMC---------RS---GAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM---------------------S 256 (440)
Q Consensus 211 ~~i~~l~---------~~---~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~ 256 (440)
....... .. .-...+-++ ...... ...+++ |++|+...+|++ .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 182 (228)
T cd03257 106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRY-PHELSG--GQRQRVAIARALALNPKLLIADEPTSALDVSVQA 182 (228)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCC-chhcCH--HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 2110000 00 000111111 111111 133443 777777777776 2
Q ss_pred HHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
.+...|..+.++.+.|||+++|..+.+..
T Consensus 183 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 183 QILDLLKKLQEELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 23334444445558999999999875543
No 144
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.09 E-value=1.1e-09 Score=99.51 Aligned_cols=120 Identities=18% Similarity=0.290 Sum_probs=80.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHH--HHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGE--MALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~e--e~l~~ 212 (440)
-+++|+++.|.|+||+||||| ++++.+...+..|.++++++..... .+.+.+++.++ .+.- +.+..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-------LS~G~~qrl~l 93 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTL-MKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ-------LSVGERQMVEI 93 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe-------cCHHHHHHHHH
Confidence 478999999999999999999 9999999999999999988654321 12334554433 3332 33445
Q ss_pred HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 213 ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 213 i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
++.++. +++++++|....-... ...+.+.+.++. + ++.+.|||+++|..+.+..
T Consensus 94 aral~~--~p~illlDEP~~~LD~-------------~~~~~l~~~l~~---~-~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 94 ARALAR--NARLLILDEPTAALTP-------------AEVERLFKVIRR---L-RAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHhc--CCCEEEEECCCcCCCH-------------HHHHHHHHHHHH---H-HHCCCEEEEEeCCHHHHHH
Confidence 555543 6899999987765531 111223333333 3 3458999999999875543
No 145
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.09 E-value=3.4e-10 Score=106.62 Aligned_cols=137 Identities=19% Similarity=0.231 Sum_probs=83.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhccccccee-ecCCCCHHHHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLI-VCQPDNGEMALEI-- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~-i~~~~~~ee~l~~-- 212 (440)
-+++|++++|.||||+||||| ++++.+...+..|.++++++.... ..+.+.+++.+++.. .....++.+.+..
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~ 101 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTL-LRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL 101 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHH
Confidence 477999999999999999999 999999999999999998865332 124456777776542 1222343332221
Q ss_pred -------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HH
Q 013567 213 -------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QA 258 (440)
Q Consensus 213 -------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~ 258 (440)
+.+++.. +-++....-. ...+++ |++|+...+|++ . .+
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 102 ENLGLPEEEIEERVEEALEL-----VGLEGLRDRS-PFTLSG--GQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHcCCCHHHHHHHHHHHHHH-----cCcHhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1112111 1122211111 134444 677777777766 2 23
Q ss_pred HHHHHHHHHhcCCEEEEEecccccccc
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
+..|..+.+ .++|||+++|..+.+..
T Consensus 174 ~~~l~~~~~-~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 174 LELLKKLKA-EGKTIIIVTHDLDLLLE 199 (211)
T ss_pred HHHHHHHHH-cCCEEEEEeCCHHHHHH
Confidence 333444443 48999999999775543
No 146
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=6e-10 Score=107.21 Aligned_cols=138 Identities=14% Similarity=0.209 Sum_probs=84.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h-hhhhhcccccceeecCCCCHHHHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S-YSKALGVDVENLIVCQPDNGEMALEI-- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~-~a~~lGv~~~~l~i~~~~~~ee~l~~-- 212 (440)
=+++|++++|.||||+||||| ++++++...+..|.++++++..... . ..+.+++.+++..++...++.+.+..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 103 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTT-FYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVL 103 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhh
Confidence 467999999999999999999 9999999999999999988754321 1 23457777766554444344332221
Q ss_pred --------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHH
Q 013567 213 --------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQA 258 (440)
Q Consensus 213 --------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~ 258 (440)
+..++.. +-++...... ..++++ |++++...++++ ...
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (241)
T PRK10895 104 QIRDDLSAEQREDRANELMEE-----FHIEHLRDSM-GQSLSG--GERRRVEIARALAANPKFILLDEPFAGVDPISVID 175 (241)
T ss_pred hcccccCHHHHHHHHHHHHHH-----cCCHHHhhcc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 1111111 1111111111 133443 666666666665 233
Q ss_pred HHHHHHHHHhcCCEEEEEecccccccc
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
+.++...+++.+.|||+++|..+.+..
T Consensus 176 l~~~l~~~~~~g~tiii~sH~~~~~~~ 202 (241)
T PRK10895 176 IKRIIEHLRDSGLGVLITDHNVRETLA 202 (241)
T ss_pred HHHHHHHHHhcCCEEEEEEcCHHHHHH
Confidence 344444445568999999998765543
No 147
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=8.4e-11 Score=113.24 Aligned_cols=155 Identities=16% Similarity=0.228 Sum_probs=105.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
.+|.-.+++|+|++||||||| +++++++.+++.|.+-++++--.+. ...+++|+.+++-.+++..++...+.
T Consensus 20 ~~p~~GvTAlFG~SGsGKTsl-in~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~ 98 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSL-INMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLR 98 (352)
T ss_pred cCCCCceEEEecCCCCChhhH-HHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchh
Confidence 344446999999999999999 9999999999998887776643333 35788999998776665554433222
Q ss_pred HHHHHHh----cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567 212 IADRMCR----SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA 266 (440)
Q Consensus 212 ~i~~l~~----~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la 266 (440)
.-..... ..-++++-|..+..-+| ..++| |++|+..+.|++ .+++--|.++.
T Consensus 99 YG~~~~~~~~fd~iv~lLGI~hLL~R~P-~~LSG--GEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~ 175 (352)
T COG4148 99 YGMWKSMRAQFDQLVALLGIEHLLDRYP-GTLSG--GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175 (352)
T ss_pred hhhcccchHhHHHHHHHhCcHHHHhhCC-CccCc--chhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHH
Confidence 1110000 00133555666666665 56666 778888887776 56788888899
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccc
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGI 297 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~ 297 (440)
++.+++|+.++|..+++..+.+.......|+
T Consensus 176 ~e~~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 176 DEINIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred HhcCCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 9999999999999887654433333333333
No 148
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=6.2e-10 Score=109.14 Aligned_cols=138 Identities=19% Similarity=0.229 Sum_probs=87.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h----hhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S----YSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~----~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-+++|++++|.||||+||||| ++++.+...+..|.++++++..... . +.+.+++.+++..++...++.+.+.
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTL-l~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 124 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTL-LRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVA 124 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHH
Confidence 367999999999999999999 9999999999999999988754321 1 1245787777665554445544433
Q ss_pred HH---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567 212 IA---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S 256 (440)
Q Consensus 212 ~i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~ 256 (440)
.. ..+++ .+-++......+ .++++ |++|+...++++ .
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~LS~--Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~ 196 (269)
T cd03294 125 FGLEVQGVPRAEREERAAEALE-----LVGLEGWEHKYP-DELSG--GMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196 (269)
T ss_pred HHHHhcCCCHHHHHHHHHHHHH-----HcCCHhHhhCCc-ccCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 21 11111 111222111111 34443 777777777776 2
Q ss_pred -HHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 257 -QALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 257 -~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
.+...|..+.++.+.|||+++|..+.+..
T Consensus 197 ~~l~~~l~~~~~~~g~tiii~tH~~~~~~~ 226 (269)
T cd03294 197 REMQDELLRLQAELQKTIVFITHDLDEALR 226 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 23333444445568999999999875543
No 149
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.08 E-value=6.4e-10 Score=102.63 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=84.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccce---eecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENL---IVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l---~i~~~~~~ee~l~ 211 (440)
-+++|++++|.|+||+||||| ++++.+...+..|.++++++..... .+.+.+++.+++. .+....++.+.+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTEL-AEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 578999999999999999999 9999999999999999998654321 2345677777653 2333344444332
Q ss_pred --------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Q 013567 212 --------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLN 277 (440)
Q Consensus 212 --------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~in 277 (440)
+++.++ .+++++++|....-.... ..+.+.+.++. + ++.+.|+|+++
T Consensus 101 ~~~~LS~G~~qrl~la~al~--~~p~llllDEP~~~LD~~-------------~~~~l~~~l~~---~-~~~~~tiii~s 161 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWLA--RDPRVLILDEPTRGVDVG-------------AKAEIYRLIRE---L-ADAGKAVLLIS 161 (182)
T ss_pred HHhhcCHHHHHHHHHHHHHc--cCCCEEEECCCCcCCCHH-------------HHHHHHHHHHH---H-HHCCCEEEEEe
Confidence 222232 468899999877665311 11123333332 3 33489999999
Q ss_pred cccccccc
Q 013567 278 QIRYKIGV 285 (440)
Q Consensus 278 hl~~~ig~ 285 (440)
|..+.+..
T Consensus 162 h~~~~~~~ 169 (182)
T cd03215 162 SELDELLG 169 (182)
T ss_pred CCHHHHHH
Confidence 99765543
No 150
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.08 E-value=6.6e-10 Score=107.68 Aligned_cols=138 Identities=17% Similarity=0.260 Sum_probs=84.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----------------hhhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----------------PSYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----------------~~~a~~lGv~~~~l~i~~ 202 (440)
-|++|++++|.||||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTI-LRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFP 100 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCC
Confidence 478999999999999999999 999999999999999998865421 123455777776655544
Q ss_pred CCCHHHHHHH----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------
Q 013567 203 PDNGEMALEI----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM----------- 255 (440)
Q Consensus 203 ~~~~ee~l~~----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l----------- 255 (440)
..++.+.+.. +.++++ .+-++....-. ..++++ |++++...++++
T Consensus 101 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDE 172 (252)
T TIGR03005 101 HKTVLDNVTEAPVLVLGMARAEAEKRAMELLD-----MVGLADKADHM-PAQLSG--GQQQRVAIARALAMRPKVMLFDE 172 (252)
T ss_pred CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HcCChhHhhcC-hhhcCH--HHHHHHHHHHHHHcCCCEEEEeC
Confidence 4444333221 111111 11122211111 133333 666666666665
Q ss_pred ----------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
..++..|..+.++.+.|||+++|..+.+..
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 212 (252)
T TIGR03005 173 VTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE 212 (252)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 123333444445568999999999876543
No 151
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.08 E-value=7e-10 Score=106.22 Aligned_cols=134 Identities=14% Similarity=0.211 Sum_probs=79.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHH-------
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEI------- 212 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~------- 212 (440)
+++|++++|.|+||+||||| ++++.+...+..|.++++++....... ..++.+++..++...++.+.+..
T Consensus 8 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTL-LNLISGLAQPTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence 57999999999999999999 999999999999999998764322111 12444444433333344333221
Q ss_pred ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
+..++. .+-++...... ..++++ |++|+...++++ ..+...
T Consensus 85 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 85 DLSKSERRAIVEEHIA-----LVGLTEAADKR-PGQLSG--GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred CCCHHHHHHHHHHHHH-----HcCCHHHHcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 111111 11122111111 133443 666666666665 233344
Q ss_pred HHHHHHhcCCEEEEEeccccccc
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig 284 (440)
|..++++.+.|||+++|..+.+.
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~ 179 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEAL 179 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHH
Confidence 44555556899999999987554
No 152
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=6.9e-10 Score=109.90 Aligned_cols=137 Identities=18% Similarity=0.260 Sum_probs=87.8
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----hhhhhhhcccccce--eecCCCCHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----PSYSKALGVDVENL--IVCQPDNGEMAL 210 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l--~i~~~~~~ee~l 210 (440)
--|++|++++|.|+||+||||| ++++.++..+..|.++++++.... ..+.+.+|+.+++. .++ +.++.+.+
T Consensus 28 ~~i~~Ge~~~i~G~nGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l 105 (287)
T PRK13637 28 IEIEDGEFVGLIGHTGSGKSTL-IQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF-EETIEKDI 105 (287)
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccc-cccHHHHH
Confidence 3578999999999999999999 999999999999999999876432 13456788887764 222 22333322
Q ss_pred H---------------HHHHHHhcCCcceEEEe--cccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567 211 E---------------IADRMCRSGAIDLICVD--SVSALTPRAEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 211 ~---------------~i~~l~~~~~~~lvVID--sl~~l~~~~el~~~~g~~q~~~~ar~l------------------ 255 (440)
. .+.+++.. +-++ .+..-. ...+++ |++|+...++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~-----~gL~~~~~~~~~-~~~LSg--Gq~qrv~iAraL~~~P~llllDEPt~gLD~ 177 (287)
T PRK13637 106 AFGPINLGLSEEEIENRVKRAMNI-----VGLDYEDYKDKS-PFELSG--GQKRRVAIAGVVAMEPKILILDEPTAGLDP 177 (287)
T ss_pred HhHHHHCCCCHHHHHHHHHHHHHH-----cCCCchhhccCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCccCCCH
Confidence 1 12222222 1121 111111 244444 788888888877
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
...+..|..+.++.+.|||+++|..+.+.
T Consensus 178 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~ 209 (287)
T PRK13637 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVA 209 (287)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 23333344444556999999999987553
No 153
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=8.7e-10 Score=106.22 Aligned_cols=138 Identities=21% Similarity=0.312 Sum_probs=87.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecCCCCHHHHHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQPDNGEMALEIA-- 213 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i-- 213 (440)
-|++|++++|.||||+||||| ++++.+...+..|.++++++.... . .+.+.+++.+++..++...++.+.+...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 101 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTT-MKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPK 101 (242)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHH
Confidence 578999999999999999999 999999999999999998875432 1 2344577777766555444554433221
Q ss_pred -------------HHHHhcCCcceEEEec--ccccCCchhhcccchhhhHHHHHHHH--------------------H-H
Q 013567 214 -------------DRMCRSGAIDLICVDS--VSALTPRAEIEGEIGMQQIGLQARLM--------------------S-Q 257 (440)
Q Consensus 214 -------------~~l~~~~~~~lvVIDs--l~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~ 257 (440)
.+++. .+-++. +..-. ..++++ |++|+...++++ . .
T Consensus 102 ~~~~~~~~~~~~~~~~l~-----~l~l~~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 173 (242)
T cd03295 102 LLKWPKEKIRERADELLA-----LVGLDPAEFADRY-PHELSG--GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173 (242)
T ss_pred HcCCCHHHHHHHHHHHHH-----HcCCCcHHHHhcC-hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 11111 111211 11111 133443 777777777776 2 2
Q ss_pred HHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
++..|..+.++.+.|||+++|..+.+..
T Consensus 174 l~~~L~~~~~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 174 LQEEFKRLQQELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred HHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 3333444444458999999998765443
No 154
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.08 E-value=4.1e-10 Score=115.56 Aligned_cols=158 Identities=20% Similarity=0.266 Sum_probs=101.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC----CC--Chh-----hhhhhcccccceeecCCCCHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH----AF--DPS-----YSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~----~~--~~~-----~a~~lGv~~~~l~i~~~~~~ee 208 (440)
+++|+++.|.|+|||||||| ++++.++..+..|.++++++. .. +.. +.+.+++.+++..+++..++.+
T Consensus 47 i~~Gei~~I~G~nGsGKSTL-lr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~e 125 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSL-LRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE 125 (382)
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHH
Confidence 67999999999999999999 999999999999999999852 11 111 1246888888877766556554
Q ss_pred HHHHHHHHH-------h---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HH
Q 013567 209 ALEIADRMC-------R---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQ 257 (440)
Q Consensus 209 ~l~~i~~l~-------~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~ 257 (440)
.+....... . ..-.+.+-++......+ .++++ |++|+...+|++ ..
T Consensus 126 Ni~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-~~LSg--Gq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 126 NVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-GELSG--GMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 443211000 0 00112222333222332 45555 788888888877 23
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
+...|..+.++.+.|||+++|..+.+...++.......|+....
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~ 246 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH 246 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 44455555566799999999998765444444445555655443
No 155
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.08 E-value=3.4e-10 Score=107.32 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=52.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-h-hhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-S-YSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~-~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|||||||||| ++++.+...+..|.+++++..... . . ..+.+++.+++..++...++.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTL-LKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE 94 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHH
Confidence 578999999999999999999 999999999999999998864322 1 1 2345777777655554444443
No 156
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.08 E-value=7.4e-10 Score=105.02 Aligned_cols=136 Identities=19% Similarity=0.209 Sum_probs=85.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-h---h-hhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-S---Y-SKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~---~-a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-+++|++++|.||||+||||| ++++++...+..|.++++++.... . . + .+.+++.+++..+....++.+.+.
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 105 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTL-LHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA 105 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHH
Confidence 578999999999999999999 999999999999999998865322 1 1 1 245788777765554445444332
Q ss_pred H---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567 212 I---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------- 255 (440)
Q Consensus 212 ~---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------- 255 (440)
. +.+++. .+-++...... ...+++ |++|+...++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 106 MPLLIGKKSVKEAKERAYEMLE-----KVGLEHRINHR-PSELSG--GERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred HHHHhcCCCHHHHHHHHHHHHH-----HcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 1 111111 11222221121 134444 777777777766
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
..+...|..+.++.+.|||+++|..+.+
T Consensus 178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 178 KIIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2233334444445689999999997654
No 157
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=7e-10 Score=107.99 Aligned_cols=66 Identities=26% Similarity=0.302 Sum_probs=48.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e 207 (440)
-|++|++++|.||||+||||| ++++.+..++..|.+++++..... ....+|+.+++..++...++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTL-LNLIAGFVPYQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHH
Confidence 478999999999999999999 999999999999999998765322 122356555554444333443
No 158
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.07 E-value=3.2e-11 Score=120.00 Aligned_cols=312 Identities=20% Similarity=0.169 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCee-eccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 89 LDRQRALDAAMNDINSSFGKGSVT-RLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 89 ~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.++..+++.++++++-.+. ...+ ..+-.....+..+++|.-..+..++ +|.+.+..+..+++.-+||++.+++.+..
T Consensus 4 ~~~~~~~~~al~~~~~~~~-~~~~~~~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~~ 82 (326)
T KOG1433|consen 4 SQKRLALQKALEEIGLSPA-PVRFLLAGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLVP 82 (326)
T ss_pred hHHHHHhhHHHHhcccCcc-chhhhhcccccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhhH
Confidence 4566677888888876544 2221 1122234456788888888888887 89999999999999999999999999987
Q ss_pred H-hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHH-HhcCCcceEEEeccccc--CCchhhccc
Q 013567 167 V-QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRM-CRSGAIDLICVDSVSAL--TPRAEIEGE 242 (440)
Q Consensus 167 ~-~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l-~~~~~~~lvVIDsl~~l--~~~~el~~~ 242 (440)
+ ++....+.+.+++...|+.+...++.......+.+|.+.+..+-..... +..+..++++||+.+.+ .+..++.++
T Consensus 83 ~~~~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~ 162 (326)
T KOG1433|consen 83 MLQLRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGR 162 (326)
T ss_pred HHHhhccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhh
Confidence 4 6677888999999999998888888888888899998887666544333 25667899999999953 334455566
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc---ccccCCceeecccceeeeeceEEEEEeecccccccC
Q 013567 243 IGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI---GVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVK 319 (440)
Q Consensus 243 ~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i---g~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~ 319 (440)
.+...+..+.+.+....+.+...+.......++++|.+... +++.....+..+| ...+.+..++..+....++ .
T Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g-~~~~~a~~~~~~~~~~~l~--~ 239 (326)
T KOG1433|consen 163 SGLRGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKG-RGELSARQMLLAKFLRSLK--K 239 (326)
T ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccccccccc-ccchHHHHHHHHHHHHHHH--H
Confidence 66665555556665555555554444444456677765422 2333333444555 6666666655555555555 3
Q ss_pred CCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCc
Q 013567 320 GDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNP 399 (440)
Q Consensus 320 g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~ 399 (440)
..+.+|..+ |++|++.++++.+ ++|+. +....+.+....+.++.+.|.|| ++++.. ++++....+|.+++
T Consensus 240 la~~~g~~v---vitn~v~~~~d~~---~~f~~--~~~~~~~~~~~~H~~~tr~~~~~-~~g~~~-~~k~~~s~~l~e~~ 309 (326)
T KOG1433|consen 240 LADEFGVAV---VITNQVTAQVDGA---IMFGS--DPKKPIGGNIWAHAVTTRLGLRK-GKGERR-ICKIADSPCLPEAE 309 (326)
T ss_pred HHHhcCceE---EEecccccccccc---cccCc--ccccccccchHHHHHHHHHHHHh-ccccch-hhhhhcCCCCCcch
Confidence 344455544 9999999999888 77776 66667777777778888889999 777776 78889999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 013567 400 LLQEEIEKVVRSMMS 414 (440)
Q Consensus 400 ~~~~ei~~~~~~~~~ 414 (440)
..++.++..+..+..
T Consensus 310 ~~~~i~~~g~~~~~~ 324 (326)
T KOG1433|consen 310 AVFAITEDGISDQRE 324 (326)
T ss_pred hHHHHHhhhhhhhhh
Confidence 999999988876543
No 159
>PRK10908 cell division protein FtsE; Provisional
Probab=99.07 E-value=7.8e-10 Score=105.10 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h----hhhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P----SYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~----~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.||||+||||| ++++++...+..|.++++++.... . .+.+.+++.+++..+....++.+.+..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTL-LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI 102 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHh
Confidence 468999999999999999999 999999999999999998864322 1 134567777766544333343332221
Q ss_pred ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567 213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
+..++.. +-++....-. ..++++ |++|+...++++ .+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (222)
T PRK10908 103 PLIIAGASGDDIRRRVSAALDK-----VGLLDKAKNF-PIQLSG--GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE 174 (222)
T ss_pred HHHhcCCCHHHHHHHHHHHHHH-----cCChhhhhCC-chhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 1111111 1111111111 133443 666766666665 22
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
.+..+....++.+.|||+++|..+.+.
T Consensus 175 ~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 175 GILRLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 333333333445899999999977554
No 160
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=8e-10 Score=105.80 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=47.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~ 201 (440)
-|.+|++++|.||||+||||| ++++++...+..|.++++++..... ...+.+++.+++..++
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 83 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTL-LNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLF 83 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccc
Confidence 478999999999999999999 9999999999999999998754321 1234466666554333
No 161
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.07 E-value=9.6e-10 Score=99.87 Aligned_cols=131 Identities=23% Similarity=0.324 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC------------Chh----hhhhhcccccceeecCCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF------------DPS----YSKALGVDVENLIVCQPD 204 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~------------~~~----~a~~lGv~~~~l~i~~~~ 204 (440)
..|+++.|.|.+||||||| |++++-+.+|..|.+.+++|+.. +.. +..++|+.++++.++...
T Consensus 30 ~~GdVisIIGsSGSGKSTf-LRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm 108 (256)
T COG4598 30 NAGDVISIIGSSGSGKSTF-LRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHM 108 (256)
T ss_pred CCCCEEEEecCCCCchhHH-HHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHH
Confidence 5799999999999999999 99999999999999999998631 111 345689999888765543
Q ss_pred CH----------------HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-------------
Q 013567 205 NG----------------EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------- 255 (440)
Q Consensus 205 ~~----------------ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------- 255 (440)
++ .+..+.++.++. -|-|+.-...+| ..++| |++|+..++|++
T Consensus 109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~-----kVGi~ek~~~YP-~~LSG--GQQQR~aIARaLameP~vmLFDEPT 180 (256)
T COG4598 109 TVLENVIEAPVHVLGVSKAEAIERAEKYLA-----KVGIAEKADAYP-AHLSG--GQQQRVAIARALAMEPEVMLFDEPT 180 (256)
T ss_pred HHHHHHHhcchHhhcCCHHHHHHHHHHHHH-----HhCchhhhhcCc-cccCc--hHHHHHHHHHHHhcCCceEeecCCc
Confidence 32 344555555543 344555555564 67776 888999999887
Q ss_pred --------HHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 256 --------SQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 256 --------~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
.+.++-+..+ .+.|.|+++++|.+.
T Consensus 181 SALDPElVgEVLkv~~~L-AeEgrTMv~VTHEM~ 213 (256)
T COG4598 181 SALDPELVGEVLKVMQDL-AEEGRTMVVVTHEMG 213 (256)
T ss_pred ccCCHHHHHHHHHHHHHH-HHhCCeEEEEeeehh
Confidence 3445444444 456899999999875
No 162
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.07 E-value=1.1e-09 Score=105.76 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=84.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----------hhhhhhhcccccceeecCCCCHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----------PSYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----------~~~a~~lGv~~~~l~i~~~~~~e 207 (440)
-+++|++++|.|+||+||||| ++++++...+..|.+++++..... ..+.+.+++.+++..+....++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTL-LRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVL 103 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHH
Confidence 478999999999999999999 999999998889999998764321 12344677777766555444544
Q ss_pred HHHHH----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH----------------
Q 013567 208 MALEI----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------- 255 (440)
Q Consensus 208 e~l~~----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------- 255 (440)
+.+.. +..++. .+-++....-. ..++++ |++|+...++++
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LS~--Gq~qrv~la~al~~~p~lllLDEPt~~L 175 (250)
T PRK11264 104 ENIIEGPVIVKGEPKEEATARARELLA-----KVGLAGKETSY-PRRLSG--GQQQRVAIARALAMRPEVILFDEPTSAL 175 (250)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH-----HcCCcchhhCC-hhhCCh--HHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 43321 111111 11111111111 133443 677777777766
Q ss_pred ----HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 ----SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 ----~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
...+..+...+.+.+.|||+++|..+.+..
T Consensus 176 D~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~ 209 (250)
T PRK11264 176 DPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARD 209 (250)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 233333333334458999999999775543
No 163
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.07 E-value=5.9e-10 Score=105.64 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=52.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
=+++|++++|.|||||||||| ++++.++..+..|.++++++.... ..+.+.+++.+++..+....++.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTT-LKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 478999999999999999999 999999999999999998875432 124455777776655444444433
No 164
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.07 E-value=8.1e-10 Score=108.03 Aligned_cols=63 Identities=24% Similarity=0.459 Sum_probs=48.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~ 202 (440)
-+++|++++|+||||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..+..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 94 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTL-LRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPG 94 (265)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCC
Confidence 467999999999999999999 999999998889999998864321 123445677666544433
No 165
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.07 E-value=9.3e-10 Score=104.92 Aligned_cols=136 Identities=18% Similarity=0.232 Sum_probs=82.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h-----hhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S-----YSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~-----~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-+++|++++|.||||+||||| +++++++..+..|.++++++..... . +.+.+++.+++..+....++.+.+.
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~ 110 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTL-LAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVE 110 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHH
Confidence 367999999999999999999 9999999999999999988653221 1 1245777776655544434433222
Q ss_pred H---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567 212 I---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S 256 (440)
Q Consensus 212 ~---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~ 256 (440)
. +.+++.. +-++...... ..++++ |++|+...++++ .
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LS~--Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 111 LPALLRGESSRQSRNGAKALLEQ-----LGLGKRLDHL-PAQLSG--GEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHH-----cCCHhHhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 1 1111111 1111111111 133333 666666666665 2
Q ss_pred HHH-HHHHHHHHhcCCEEEEEecccccc
Q 013567 257 QAL-RKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 257 ~~l-~~L~~lak~~~~tVI~inhl~~~i 283 (440)
+.+ ..|..++++.+.|||+++|..+.+
T Consensus 183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~ 210 (228)
T PRK10584 183 DKIADLLFSLNREHGTTLILVTHDLQLA 210 (228)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 233 334444455689999999997644
No 166
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.07 E-value=8.5e-10 Score=105.17 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=55.0
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-=+++|++++|+||||+||||| ++++.+... +..|.++++++......+.+.+++.+++..++...++.+.+.
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTL-lk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 103 (226)
T cd03234 28 LHVESGQVMAILGSSGSGKTTL-LDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLT 103 (226)
T ss_pred EEEcCCeEEEEECCCCCCHHHH-HHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHH
Confidence 3578999999999999999999 999999988 788999998875433234556777777665555445544443
No 167
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.06 E-value=6.3e-10 Score=116.26 Aligned_cols=166 Identities=17% Similarity=0.232 Sum_probs=102.1
Q ss_pred CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--Chhhhhhhccc--ccceeecCC
Q 013567 128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--DPSYSKALGVD--VENLIVCQP 203 (440)
Q Consensus 128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--~~~~a~~lGv~--~~~l~i~~~ 203 (440)
|+..||.+- =-+.+|+++.+.|.||+||||| ++++.+...++.|.++++++... ++.-++..|+. .|++.+++.
T Consensus 20 gV~AL~~v~-l~v~~GEV~aL~GeNGAGKSTL-mKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~ 97 (500)
T COG1129 20 GVKALDGVS-LTVRPGEVHALLGENGAGKSTL-MKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPN 97 (500)
T ss_pred Cceeeccce-eEEeCceEEEEecCCCCCHHHH-HHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCC
Confidence 445555542 3578999999999999999999 99999999999999999988643 33345555542 333322222
Q ss_pred CCH-------------------HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------
Q 013567 204 DNG-------------------EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------- 255 (440)
Q Consensus 204 ~~~-------------------ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------- 255 (440)
.++ ..+...+.+++...+.. +| +.... .+++ .+++|+...+|++
T Consensus 98 LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~---~~-~~~~v--~~Ls--iaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 98 LSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD---ID-PDTLV--GDLS--IAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred ccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC---CC-hhhhh--hhCC--HHHHHHHHHHHHHhcCCCEEEE
Confidence 222 12222222332222221 11 11111 1111 2445555555544
Q ss_pred -----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567 256 -----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA 303 (440)
Q Consensus 256 -----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a 303 (440)
.+.+-.+.+.+++.|++||+|||-.+++-..++...+.-+|..+....
T Consensus 170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 345556667778899999999999888877777777777777655544
No 168
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=4.4e-10 Score=106.16 Aligned_cols=136 Identities=24% Similarity=0.357 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccceeecCCCCHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
+++ ++++|.||||+||||| ++++.+...+..|.++++++.... ..+.+.+++.+++..+....++.+.+..
T Consensus 21 i~~-e~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 98 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTL-LRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAF 98 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHH
Confidence 578 9999999999999999 999999999999999998865321 1134457777776555544454433221
Q ss_pred -------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHH
Q 013567 213 -------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQA 258 (440)
Q Consensus 213 -------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~ 258 (440)
+.+++. .+-++...... ..++++ |++|+...++++ ..+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (214)
T cd03297 99 GLKRKRNREDRISVDELLD-----LLGLDHLLNRY-PAQLSG--GEKQRVALARALAAQPELLLLDEPFSALDRALRLQL 170 (214)
T ss_pred HHhhCCHHHHHHHHHHHHH-----HcCCHhHhhcC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 111111 11122211111 133443 666666666665 223
Q ss_pred HHHHHHHHHhcCCEEEEEecccccccc
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
...|..++++.+.|||+++|..+.+..
T Consensus 171 ~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 171 LPELKQIKKNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred HHHHHHHHHHcCcEEEEEecCHHHHHH
Confidence 333444445568999999999876543
No 169
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.06 E-value=7.1e-10 Score=107.11 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=104.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----------hhhhhhcccccceeecC-CCCH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----------SYSKALGVDVENLIVCQ-PDNG- 206 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----------~~a~~lGv~~~~l~i~~-~~~~- 206 (440)
-+.+|++++|+|++||||||+ -+++.++.++..|.++|++.+.... .+...+|...+.+.-++ ..++
T Consensus 35 ~i~~ge~~glVGESG~GKSTl-gr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTL-GRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHH-HHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 578999999999999999999 7899999999999999998763221 02334453333222221 1222
Q ss_pred -HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 207 -EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 207 -ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
.|-+.+++.+. .+++++|.|........ . .| ++++.-|..+-++.|.+.+||+|+...+..
T Consensus 114 QrQRi~IARALa--l~P~liV~DEpvSaLDv-S-----------iq----aqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 114 QRQRIGIARALA--LNPKLIVADEPVSALDV-S-----------VQ----AQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhhHHHHHHHh--hCCcEEEecCchhhcch-h-----------HH----HHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 33445555553 36888888887766531 0 11 456777778888899999999999887776
Q ss_pred ccCCceeecccceeeeeceEEEEEe
Q 013567 286 YYGNPEVTSGGIALKFFASVRLEIR 310 (440)
Q Consensus 286 ~~~~~~~~~gG~~l~~~a~~rl~l~ 310 (440)
+++...++-.|+++.......++-.
T Consensus 176 isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 176 ISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred hcccEEEEecCceeEecCHHHHhhC
Confidence 6666666667777666655544443
No 170
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=8.9e-10 Score=106.18 Aligned_cols=137 Identities=16% Similarity=0.222 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALE---- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~---- 211 (440)
=+++|++++|.|||||||||| ++++++...+..|.+++++..... ..+.+.+++.+++..+++ .++.+.+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~ 102 (241)
T PRK14250 25 KFEGGAIYTIVGPSGAGKSTL-IKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPM 102 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchh
Confidence 367999999999999999999 999999999999999998865321 123445677666654443 23332221
Q ss_pred -------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH--------------------HHHH-HHH
Q 013567 212 -------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQAL-RKM 262 (440)
Q Consensus 212 -------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l-~~L 262 (440)
.+..++.. +-++ .+.... ..++++ |++|+...++++ .+.+ ..|
T Consensus 103 ~~~~~~~~~~~~l~~-----~~l~~~~~~~~-~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (241)
T PRK14250 103 LKGEKNVDVEYYLSI-----VGLNKEYATRD-VKNLSG--GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174 (241)
T ss_pred hcCcHHHHHHHHHHH-----cCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11111111 1111 111111 133443 677777777765 2233 334
Q ss_pred HHHHHhcCCEEEEEecccccccc
Q 013567 263 SGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 263 ~~lak~~~~tVI~inhl~~~ig~ 285 (440)
..+.++.+.|||+++|..+.+..
T Consensus 175 ~~~~~~~g~tii~~sH~~~~~~~ 197 (241)
T PRK14250 175 VKLKNKMNLTVIWITHNMEQAKR 197 (241)
T ss_pred HHHHHhCCCEEEEEeccHHHHHH
Confidence 44444468999999999876543
No 171
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.06 E-value=4.5e-10 Score=107.05 Aligned_cols=137 Identities=18% Similarity=0.278 Sum_probs=83.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-----hcCCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ-----KLGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~-----~~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|+||+||||| ++++.+.. .+..|.++++++.... ..+.+.+++.+++..++ ..++.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e 99 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTL-LRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYD 99 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHH
Confidence 477999999999999999999 99999999 8889999998875321 12345677777765544 445443
Q ss_pred HHHH----------------HHHHHhcCCcceEEEecccccCC-chhhcccchhhhHHHHHHHH----------------
Q 013567 209 ALEI----------------ADRMCRSGAIDLICVDSVSALTP-RAEIEGEIGMQQIGLQARLM---------------- 255 (440)
Q Consensus 209 ~l~~----------------i~~l~~~~~~~lvVIDsl~~l~~-~~el~~~~g~~q~~~~ar~l---------------- 255 (440)
.+.. +..+++ .+-++....-.+ ..++++ |++|+...++++
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~~~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~L 172 (227)
T cd03260 100 NVAYGLRLHGIKLKEELDERVEEALR-----KAALWDEVKDRLHALGLSG--GQQQRLCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred HHHhHHHhcCCCcHHHHHHHHHHHHH-----HcCCChHHhccCCcccCCH--HHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 3321 111111 111221111110 134444 778888778776
Q ss_pred ----HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 ----SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 ----~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
...+..+....++. .|||+++|..+.+..
T Consensus 173 D~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~ 205 (227)
T cd03260 173 DPISTAKIEELIAELKKE-YTIVIVTHNMQQAAR 205 (227)
T ss_pred CHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHH
Confidence 22333333333333 899999999875543
No 172
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=9.5e-10 Score=106.65 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=49.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+.+|++++|.|+||+||||| ++++++...+..|.+++++...... .+ ...+++.+++..++...++.+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 99 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTV-FNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIE 99 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHH-HHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHH
Confidence 467999999999999999999 9999999999999999988753321 11 223555566554444444444
No 173
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.06 E-value=1.5e-09 Score=104.25 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=82.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMALEI---- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~l~~---- 212 (440)
-|.+|++++|.||||+||||| ++++.+...+..|.++++++.... ....+.+++.+++..+....++.+.+..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~ 101 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTL-FSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAAL 101 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHh
Confidence 477999999999999999999 999999999999999998864322 1223456776665444333343332221
Q ss_pred -----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567 213 -----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR 260 (440)
Q Consensus 213 -----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~ 260 (440)
+..+++. +-++....-. ..++++ |++|+...++++ ..+..
T Consensus 102 ~~~~~~~~~~~~~~~l~~-----~gl~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~ 173 (236)
T TIGR03864 102 HGLSRAEARERIAALLAR-----LGLAERADDK-VRELNG--GHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA 173 (236)
T ss_pred cCCCHHHHHHHHHHHHHH-----cCChhhhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 1111111 1111111111 133443 667776667665 23334
Q ss_pred HHHHHHHhcCCEEEEEecccccc
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~i 283 (440)
.|..++++.+.|||+++|..+.+
T Consensus 174 ~l~~~~~~~~~tiii~sH~~~~~ 196 (236)
T TIGR03864 174 HVRALCRDQGLSVLWATHLVDEI 196 (236)
T ss_pred HHHHHHHhCCCEEEEEecChhhH
Confidence 44444445689999999998755
No 174
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.05 E-value=1.2e-09 Score=106.16 Aligned_cols=137 Identities=16% Similarity=0.169 Sum_probs=86.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----------------hhhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----------------PSYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----------------~~~a~~lGv~~~~l~i~~ 202 (440)
-+++|++++|.|+||+||||| ++++.+...+..|.++++++.... ..+.+.+++.+++..+..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 105 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTF-LRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 105 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCC
Confidence 578999999999999999999 999999999999999999875321 123456787777765555
Q ss_pred CCCHHHHHHH----------------HHHHHhcCCcceEEEeccc-ccCCchhhcccchhhhHHHHHHHH----------
Q 013567 203 PDNGEMALEI----------------ADRMCRSGAIDLICVDSVS-ALTPRAEIEGEIGMQQIGLQARLM---------- 255 (440)
Q Consensus 203 ~~~~ee~l~~----------------i~~l~~~~~~~lvVIDsl~-~l~~~~el~~~~g~~q~~~~ar~l---------- 255 (440)
..++.+.+.. +.++++. +-++... .-. ..++++ |++++...+|++
T Consensus 106 ~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~-----~gl~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllD 177 (257)
T PRK10619 106 HMTVLENVMEAPIQVLGLSKQEARERAVKYLAK-----VGIDERAQGKY-PVHLSG--GQQQRVSIARALAMEPEVLLFD 177 (257)
T ss_pred CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----cCCChhhhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEe
Confidence 4454443321 1111111 1121110 111 134443 777777777766
Q ss_pred ----------HHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
.+.+..+...+++.+.|||+++|..+.+.
T Consensus 178 EPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~ 216 (257)
T PRK10619 178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 216 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 23333333334456999999999877554
No 175
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=5.4e-10 Score=109.26 Aligned_cols=150 Identities=18% Similarity=0.233 Sum_probs=86.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALE---- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~---- 211 (440)
-|++|++++|.|+||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..+....++.+.+.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 111 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTL-LKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRY 111 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcc
Confidence 467999999999999999999 999999998889999998864321 123445666665533333333332221
Q ss_pred ---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567 212 ---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------- 255 (440)
Q Consensus 212 ---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------- 255 (440)
.+..++. .+-++...... ...+++ |++++...++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LSg--G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (265)
T PRK10575 112 PWHGALGRFGAADREKVEEAIS-----LVGLKPLAHRL-VDSLSG--GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183 (265)
T ss_pred cccccccCCCHHHHHHHHHHHH-----HcCCHHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1111111 11112111111 133443 666666666665
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccc
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGI 297 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~ 297 (440)
..+...|..+.++.+.|||+++|..+.+...++.......|+
T Consensus 184 ~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 184 VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 223333444445568999999999876644344333333343
No 176
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.05 E-value=5.7e-10 Score=106.11 Aligned_cols=67 Identities=19% Similarity=0.349 Sum_probs=48.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e 207 (440)
-+.+|++++|.|+||+||||| ++++++...+..|.+++++....... .+.+++.+++..+....++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTL-LKMITGILRPTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 367999999999999999999 99999999899999999876432111 23566655554444333443
No 177
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=1.3e-09 Score=101.45 Aligned_cols=122 Identities=14% Similarity=0.168 Sum_probs=80.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEI---- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~---- 212 (440)
-+++|++++|.||||+||||| ++++.+.. .+..|.++++++... ..+.+.+++.+++..++...++.+.+..
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTL-LDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL 106 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence 477999999999999999999 99999864 367888999887543 3334567777766554444455444332
Q ss_pred -------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567 213 -------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI 279 (440)
Q Consensus 213 -------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl 279 (440)
++.++ .+++++++|....-.... ..+.+.+.+ ..+ ++.+.|||+++|.
T Consensus 107 ~~LSgGe~qrv~la~al~--~~p~vlllDEP~~~LD~~-------------~~~~l~~~l---~~~-~~~~~tiiivtH~ 167 (192)
T cd03232 107 RGLSVEQRKRLTIGVELA--AKPSILFLDEPTSGLDSQ-------------AAYNIVRFL---KKL-ADSGQAILCTIHQ 167 (192)
T ss_pred hcCCHHHhHHHHHHHHHh--cCCcEEEEeCCCcCCCHH-------------HHHHHHHHH---HHH-HHcCCEEEEEEcC
Confidence 22222 367899999877655310 011222333 333 3458999999999
Q ss_pred cc
Q 013567 280 RY 281 (440)
Q Consensus 280 ~~ 281 (440)
.+
T Consensus 168 ~~ 169 (192)
T cd03232 168 PS 169 (192)
T ss_pred Ch
Confidence 75
No 178
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=1.2e-09 Score=108.23 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=88.4
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccce--eec
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENL--IVC 201 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l--~i~ 201 (440)
.|+.+- --|++|++++|.|+|||||||| ++++.+...+..|.+++++..... ..+.+.+|+.+++. .++
T Consensus 22 ~l~~vs-l~i~~Ge~~~i~G~nGsGKSTL-l~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 22 AIHDVN-TEFEQGKYYAIVGQTGSGKSTL-IQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred ceeeeE-EEEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 444432 4678999999999999999999 999999999999999999875432 12456788888763 222
Q ss_pred CCCCHHHHHH---------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH----------
Q 013567 202 QPDNGEMALE---------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM---------- 255 (440)
Q Consensus 202 ~~~~~ee~l~---------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l---------- 255 (440)
. .++.+.+. .+.+++. .+-++ ....-. ...+++ |++|+...++++
T Consensus 100 ~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~~LSg--Gq~qrv~laraL~~~p~illlD 170 (286)
T PRK13646 100 E-DTVEREIIFGPKNFKMNLDEVKNYAHRLLM-----DLGFSRDVMSQS-PFQMSG--GQMRKIAIVSILAMNPDIIVLD 170 (286)
T ss_pred h-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHH-----HcCCChhhhhCC-cccCCH--HHHHHHHHHHHHHhCCCEEEEE
Confidence 2 23332221 1222221 11121 111111 234444 777777777776
Q ss_pred ----------HHHH-HHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 ----------SQAL-RKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 ----------~~~l-~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
...+ ..|..+.++.++|||+++|..+.+..
T Consensus 171 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~ 211 (286)
T PRK13646 171 EPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVAR 211 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 2233 33334444568999999999876543
No 179
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=1.4e-09 Score=99.32 Aligned_cols=124 Identities=22% Similarity=0.281 Sum_probs=83.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHH------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMA------ 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~------ 209 (440)
=+++|+++.|.||||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..+++ .++.+.
T Consensus 24 ~i~~G~~~~l~G~nGsGKstL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~ 101 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTL-LKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENILSGGQ 101 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHhhCHHH
Confidence 478999999999999999999 999999999999999998875322 123455777776655543 344322
Q ss_pred ---HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 210 ---LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 210 ---l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
+.+++.++ .+++++++|....-.... . .+.+.+.+ ..+ ++ +.|||+++|..+.+.
T Consensus 102 ~~rl~la~al~--~~p~llllDEP~~gLD~~------------~-~~~l~~~l---~~~-~~-~~tii~~sh~~~~~~ 159 (171)
T cd03228 102 RQRIAIARALL--RDPPILILDEATSALDPE------------T-EALILEAL---RAL-AK-GKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHh--cCCCEEEEECCCcCCCHH------------H-HHHHHHHH---HHh-cC-CCEEEEEecCHHHHH
Confidence 33344443 368999999877655311 0 11223333 233 23 689999999987553
No 180
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.05 E-value=4.9e-10 Score=107.67 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=44.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDV 195 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~ 195 (440)
=+++|++++|.|+||+||||| ++++++...+..|.++++++.... ..+.+.+++.+
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~ 100 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTT-LKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVF 100 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCEEccccchhhcccEEEEc
Confidence 467999999999999999999 999999999999999998764322 12334566654
No 181
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=1.1e-09 Score=107.75 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=48.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l 198 (440)
=|++|++++|.|+||+||||| ++++.+..++..|.+++++...... .+.+.+|+.+++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 88 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTL-LLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDP 88 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecCh
Confidence 478999999999999999999 9999999999999999998754321 2345678777654
No 182
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=9.7e-10 Score=109.00 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=88.5
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccce--eecCCCCHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENL--IVCQPDNGEM 208 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l--~i~~~~~~ee 208 (440)
-=|++|++++|.|+||+||||| ++++.++..+..|.++++++.... ..+.+.+|+.+++. .++. .++.+
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e 105 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTL-LQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEK 105 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHH
Confidence 4578999999999999999999 999999999999999999875421 12445688877764 2332 23333
Q ss_pred HHH---------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567 209 ALE---------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 209 ~l~---------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
.+. .+..+++ .+-++ .+.... ...+++ |++|+...++++
T Consensus 106 ni~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~~LSg--Gq~qrv~lAraL~~~P~llllDEPt~~LD 177 (290)
T PRK13634 106 DICFGPMNFGVSEEDAKQKAREMIE-----LVGLPEELLARS-PFELSG--GQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177 (290)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH-----HCCCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 222 1122221 22221 111111 244444 777877777776
Q ss_pred ----HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 ----SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 ----~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
..++..|..+.++.|.|||+++|..+.+..
T Consensus 178 ~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~ 211 (290)
T PRK13634 178 PKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAAR 211 (290)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 234444555556679999999999876543
No 183
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.04 E-value=2.1e-09 Score=100.57 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
=+++|++++|.|+||+||||| ++++++...+..|.++++++..... .+.+.+++.+++..+....++.+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 93 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTL-LKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE 93 (200)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHH
Confidence 367999999999999999999 9999999999999999998754321 23455676665544444444443
No 184
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.04 E-value=4.7e-10 Score=104.47 Aligned_cols=165 Identities=17% Similarity=0.238 Sum_probs=101.9
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CcEEEEcCCCCCCh-----hhhhhhcccccceeecCCCCH-
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-----GNAMLVDAEHAFDP-----SYSKALGVDVENLIVCQPDNG- 206 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-----~~vv~id~E~~~~~-----~~a~~lGv~~~~l~i~~~~~~- 206 (440)
-.||++++++|.||+||||||| |++++.+-..- .|.+++++++..++ .+.+++|+.+++...++ .+.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~-LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIy 105 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTL-LRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIY 105 (253)
T ss_pred eeccCCceEEEECCCCcCHHHH-HHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHH
Confidence 6899999999999999999999 99999886532 37788999887765 26788999887544332 111
Q ss_pred --------------HHHHHHHHHHHhcCCcceEEEecccccCCc--hhhcccchhhhHHHHHHHH---------------
Q 013567 207 --------------EMALEIADRMCRSGAIDLICVDSVSALTPR--AEIEGEIGMQQIGLQARLM--------------- 255 (440)
Q Consensus 207 --------------ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~--~el~~~~g~~q~~~~ar~l--------------- 255 (440)
.++.++++..++.. -.+|.+-.-... ..++| |++|+...||++
T Consensus 106 dNVayG~r~~g~~~~~ldeiVe~sLk~A----aLWdEVKDrL~~sa~~LSG--GQQQRLcIARalAv~PeVlLmDEPtSA 179 (253)
T COG1117 106 DNVAYGLRLHGIKDKELDEIVESSLKKA----ALWDEVKDRLHKSALGLSG--GQQQRLCIARALAVKPEVLLMDEPTSA 179 (253)
T ss_pred HHHHHhHHhhccchHHHHHHHHHHHHHh----HhHHHhHHHhhCCccCCCh--hHHHHHHHHHHHhcCCcEEEecCcccc
Confidence 22223333322211 112222222111 22333 777777777776
Q ss_pred -----HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEee
Q 013567 256 -----SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRS 311 (440)
Q Consensus 256 -----~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r 311 (440)
...+..|..-++ .+.|||+++|.+.......+...+...|..+++..+..++..+
T Consensus 180 LDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P 239 (253)
T COG1117 180 LDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNP 239 (253)
T ss_pred cCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCc
Confidence 233444444444 5789999999986443222223344467777777766666554
No 185
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.03 E-value=1.6e-09 Score=105.31 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=47.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhccccccee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLI 199 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~ 199 (440)
-+++|++++|.|+||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTL-LRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD 85 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCc
Confidence 467999999999999999999 999999999999999998865322 123345676666543
No 186
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.4e-09 Score=107.28 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=48.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l 198 (440)
-|.+|++++|.||||+||||| ++++.+..++..|.+++++...... .+.+.+|+.+++.
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTL-l~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 90 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTL-AKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNP 90 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCH
Confidence 578999999999999999999 9999999999999999998754321 2345677777654
No 187
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.03 E-value=8.2e-10 Score=105.44 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=52.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
-|++|++++|.|+|||||||| ++++++...+..|.++++++..... ...+.+++.+++..++...++.+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 95 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTL-LKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEEN 95 (230)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHH
Confidence 478999999999999999999 9999999999999999988653321 123457777776555544454443
No 188
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=1e-09 Score=105.04 Aligned_cols=141 Identities=20% Similarity=0.332 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHH--
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRM-- 216 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l-- 216 (440)
+.+|++++|.|+||+||||| ++++.+...+..|.++++++..... ...+.+++.+++..++...++.+.+......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTL-l~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~ 101 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTL-LRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK 101 (232)
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC
Confidence 67999999999999999999 9999999999999999988744321 1234577777665554443443332211000
Q ss_pred -----Hh---cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHH-HHHHHHH
Q 013567 217 -----CR---SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALR-KMSGNAS 267 (440)
Q Consensus 217 -----~~---~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~-~L~~lak 267 (440)
.. ..-.+.+-++......+ .++++ |++++...+|++ ...+. .|..+.+
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~lS~--G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 178 (232)
T cd03300 102 LPKAEIKERVAEALDLVQLEGYANRKP-SQLSG--GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178 (232)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 00011122222222221 33433 666666666665 22333 3334444
Q ss_pred hcCCEEEEEeccccccc
Q 013567 268 KAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 268 ~~~~tVI~inhl~~~ig 284 (440)
+.+.|||+++|....+.
T Consensus 179 ~~~~tiii~sh~~~~~~ 195 (232)
T cd03300 179 ELGITFVFVTHDQEEAL 195 (232)
T ss_pred HcCCEEEEEeCCHHHHH
Confidence 46899999999987554
No 189
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.03 E-value=1.9e-09 Score=102.07 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=49.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNG 206 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ 206 (440)
-+.+|++++|.|+||+||||| ++++.+...+..|.++++++......+.+.+++.+++..+....++
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~ 99 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTL-LRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLST 99 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHH-HHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcH
Confidence 478999999999999999999 9999999999999999988754332233446666555444333333
No 190
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.03 E-value=1.1e-09 Score=101.54 Aligned_cols=59 Identities=20% Similarity=0.383 Sum_probs=47.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-----hhhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-----SYSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-----~~a~~lGv~~~~l 198 (440)
-+++|++++|.|||||||||| ++++.+...+..|.+++++...... .+.+.+++.+++.
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTL-LLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence 478999999999999999999 9999999999999999988654211 2345577777654
No 191
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=7e-10 Score=110.84 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=85.3
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--------------------------C-hhhhhh
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--------------------------D-PSYSKA 190 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--------------------------~-~~~a~~ 190 (440)
==|.+|++++|.|+|||||||| ++++.++.++..|.++++++... . ..+.+.
T Consensus 28 l~i~~Ge~v~iiG~nGsGKSTL-l~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (305)
T PRK13651 28 VEINQGEFIAIIGQTGSGKTTF-IEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRR 106 (305)
T ss_pred EEEeCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhc
Confidence 3578999999999999999999 99999999999999999765321 1 124566
Q ss_pred hcccccce--eecCCCCHHHHHH---------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHH
Q 013567 191 LGVDVENL--IVCQPDNGEMALE---------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQA 252 (440)
Q Consensus 191 lGv~~~~l--~i~~~~~~ee~l~---------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~a 252 (440)
+|+.+++. .++. .++.+.+. .+.+++. .+-++ .+.... ...+++ |++|+...+
T Consensus 107 ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~~LSg--GqkqrvalA 177 (305)
T PRK13651 107 VGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIE-----LVGLDESYLQRS-PFELSG--GQKRRVALA 177 (305)
T ss_pred eEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHH-----HcCCChhhhhCC-hhhCCH--HHHHHHHHH
Confidence 88888753 2222 24333222 1222222 22222 111222 244554 777777777
Q ss_pred HHH--------------------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 253 RLM--------------------SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 253 r~l--------------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
+++ ...+..+...+++.+.|||+++|..+.+..
T Consensus 178 ~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 776 223333333334569999999999875543
No 192
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.03 E-value=1.2e-09 Score=103.07 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=45.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l 198 (440)
-+++|++++|.||||+||||| ++++++...+..|.++++++... .+.+.+++.+++.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~ 77 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTL-LKAILGLLKPTSGSIRVFGKPLE--KERKRIGYVPQRR 77 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCCEEEECCccHH--HHHhheEEecccc
Confidence 478999999999999999999 99999999999999999876432 2334566665543
No 193
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.03 E-value=8.3e-10 Score=106.99 Aligned_cols=42 Identities=26% Similarity=0.559 Sum_probs=38.2
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
|=+.+|++++|.||||+||||| ++++++...+..|.+++++.
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTL-lk~L~G~~~p~~G~i~~~g~ 61 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTF-IKMLAGVLKPDEGDIEIELD 61 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHH-HHHHhCCCcCCCCeEEECCc
Confidence 6689999999999999999999 99999999988888888764
No 194
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.02 E-value=1.7e-09 Score=105.84 Aligned_cols=140 Identities=12% Similarity=0.191 Sum_probs=87.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccce--eecCCCCHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENL--IVCQPDNGEMAL 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l--~i~~~~~~ee~l 210 (440)
-+++|++++|.|+||+||||| +++++++..+..|.++++++..... .+.+.+++.+++. .+....++.+.+
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l 111 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTL-ARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII 111 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHH
Confidence 468999999999999999999 9999999999999999998754321 1234578777764 233334444332
Q ss_pred HH----------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567 211 EI----------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 211 ~~----------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------------ 255 (440)
.. +..+++ .+-++ .+.... ..++++ |++|+...+|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~~-~~~LSg--Ge~qrv~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 112 GEPLRHLTSLDESEQKARIAELLD-----MVGLRSEDADKL-PRQLSG--GQLQRINIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-----HcCCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 11 111111 12221 111111 234444 777777777776
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYY 287 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~ 287 (440)
..++..|..+.++.+.|||+++|..+.+...+
T Consensus 184 ~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~ 218 (265)
T TIGR02769 184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFC 218 (265)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHh
Confidence 23444455555556899999999987654333
No 195
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.02 E-value=1.8e-09 Score=105.22 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=49.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCCCCC--------hhhhhhhcccccceeecCCCCHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEHAFD--------PSYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~~~~--------~~~a~~lGv~~~~l~i~~~~~~e 207 (440)
-|++|++++|+||||+||||| ++++++...+. .|.++++++.... ..+.+.+++.+++..++...++.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 104 (262)
T PRK09984 26 NIHHGEMVALLGPSGSGKSTL-LRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVL 104 (262)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHH
Confidence 367999999999999999999 99999998765 4788998865321 12234577777665544433443
No 196
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=6.7e-10 Score=106.62 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=52.2
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
=-+.+|++++|+|+||+||||| ++++.+...+..|.+++++...... .+.+.+++.+++..++...++.+
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 99 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTL-LGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEE 99 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHH
Confidence 3578999999999999999999 9999999999999999988754321 12345777766554444334433
No 197
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.02 E-value=1.3e-09 Score=104.86 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=51.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h--hhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S--YSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~--~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+.+|++++|.|+||+||||| ++++.+...+..|.+++++...... . ..+.+++.+++..++...++.+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 96 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTM-MDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFE 96 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHH
Confidence 477999999999999999999 9999999999999999998643221 1 2234777776655554444443
No 198
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=7.6e-10 Score=107.53 Aligned_cols=150 Identities=15% Similarity=0.248 Sum_probs=87.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecCCCCHHHHHHH---
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQPDNGEMALEI--- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~~~~~ee~l~~--- 212 (440)
-+++|++++|.|+||+||||| ++++++...+..|.+++++..... . .+.+.+++.+++..+....++.+.+..
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~ 102 (255)
T PRK11231 24 SLPTGKITALIGPNGCGKSTL-LKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRS 102 (255)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccc
Confidence 367999999999999999999 999999998889999998764321 1 234456776665444333333332221
Q ss_pred ----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567 213 ----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S 256 (440)
Q Consensus 213 ----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~ 256 (440)
+..++. .+-++...... ..++++ |++++...++++ .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (255)
T PRK11231 103 PWLSLWGRLSAEDNARVNQAME-----QTRINHLADRR-LTDLSG--GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174 (255)
T ss_pred hhhhhccCCCHHHHHHHHHHHH-----HcCCHHHHcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 111111 11122211111 133443 666666666665 2
Q ss_pred HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccc
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGI 297 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~ 297 (440)
..+..+....++.+.|||+++|..+.+...++.......|+
T Consensus 175 ~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 175 VELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCe
Confidence 23333333333458999999999876654444333333343
No 199
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.02 E-value=1.4e-09 Score=102.34 Aligned_cols=69 Identities=25% Similarity=0.234 Sum_probs=49.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-|++|++++|.|+||+||||| ++++.+...+..|.++++++......+.+.+++.++...+....++.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTL-LRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 477999999999999999999 999999998889999998865322223444555554333333334433
No 200
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=9.9e-10 Score=108.47 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=82.2
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC---cEEEEcCCCCCCh---hhhhhhccccccee-ecCCCCHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG---NAMLVDAEHAFDP---SYSKALGVDVENLI-VCQPDNGEMAL 210 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~---~vv~id~E~~~~~---~~a~~lGv~~~~l~-i~~~~~~ee~l 210 (440)
=-|++|++++|.||||+||||| ++++++...+.. |.++++++..... .+.+.+|+.+++.. .+...++.+.+
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTL-l~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl 106 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTI-SKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDV 106 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHH
Confidence 3578999999999999999999 999999988765 7899988764321 23456777766542 22223333322
Q ss_pred H---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------
Q 013567 211 E---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------------- 255 (440)
Q Consensus 211 ~---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------------- 255 (440)
. .+..++.. +-++......+ ..+++ |++++...++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~-----~~L~~~~~~~~-~~LS~--G~~qrv~laral~~~P~llllDEPt~gLD~~~ 178 (282)
T PRK13640 107 AFGLENRAVPRPEMIKIVRDVLAD-----VGMLDYIDSEP-ANLSG--GQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178 (282)
T ss_pred HhhHHhCCCCHHHHHHHHHHHHHH-----CCChhHhcCCc-ccCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 2 11112111 11111111121 33333 666666666665
Q ss_pred -HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 256 -SQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 256 -~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
..++..|..+.++.+.|||+++|..+.+
T Consensus 179 ~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 179 KEQILKLIRKLKKKNNLTVISITHDIDEA 207 (282)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 2333444444455689999999997654
No 201
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.5e-09 Score=107.42 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=86.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccce--eecCCCCHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENL--IVCQPDNGEMA 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l--~i~~~~~~ee~ 209 (440)
=+++|++++|.||||+||||| ++++.++..+..|.++++++.... ..+.+.+|+.+++. .++ ..++.+.
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~ 106 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTL-MQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKD 106 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHH
Confidence 478999999999999999999 999999999999999999875432 12344678777763 222 2344443
Q ss_pred HHH---------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567 210 LEI---------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 210 l~~---------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------------ 255 (440)
+.. +.+++. .+-++ .+.... ..++++ |++|+...++++
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~~LSg--Gq~qrl~laral~~~p~lLlLDEPt~gLD~ 178 (287)
T PRK13641 107 VEFGPKNFGFSEDEAKEKALKWLK-----KVGLSEDLISKS-PFELSG--GQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178 (287)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH-----HcCCChhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 321 111111 12222 111111 234444 777777777776
Q ss_pred --HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 --SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
...+..+....++.+.|||+++|..+.+..
T Consensus 179 ~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~ 210 (287)
T PRK13641 179 EGRKEMMQLFKDYQKAGHTVILVTHNMDDVAE 210 (287)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 233333333334568999999999876543
No 202
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.02 E-value=1.4e-09 Score=104.54 Aligned_cols=144 Identities=16% Similarity=0.189 Sum_probs=83.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.||||+||||| ++++++.. .+..|.+++++...... .+ ...+++.+++..++...+..+.+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~ 100 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTL-SKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRS 100 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHH
Confidence 478999999999999999999 99999984 57889999988754321 11 2236666666555544455443332
Q ss_pred HHHHHhc-----------------CCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-------------------
Q 013567 213 ADRMCRS-----------------GAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------------- 255 (440)
Q Consensus 213 i~~l~~~-----------------~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------------- 255 (440)
....... .-...+-++ .+....+...+++ |++|+...++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~--G~~qrl~la~al~~~p~llllDEPt~~LD~~ 178 (243)
T TIGR01978 101 ALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSG--GEKKRNEILQMALLEPKLAILDEIDSGLDID 178 (243)
T ss_pred HHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCH--HHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 1110000 000111121 1111111112444 777887777776
Q ss_pred -HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 -SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 -~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
...+..+....++.+.|||+++|..+.+..
T Consensus 179 ~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 179 ALKIVAEGINRLREPDRSFLIITHYQRLLNY 209 (243)
T ss_pred HHHHHHHHHHHHHHCCcEEEEEEecHHHHHh
Confidence 233333333334468999999999875543
No 203
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.02 E-value=7.5e-10 Score=109.14 Aligned_cols=168 Identities=21% Similarity=0.249 Sum_probs=111.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-c----CCcEEEEcCCCCCChh-------hhhhhccccccee-ecCCC-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-L----GGNAMLVDAEHAFDPS-------YSKALGVDVENLI-VCQPD- 204 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~----~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~-i~~~~- 204 (440)
-+.+|++++|+|.+||||||+++ .+.++.. + .+|.++|++++..... +.+.+++.+|+-. -..|.
T Consensus 27 ~i~~GE~lgiVGESGsGKS~~~~-aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~ 105 (316)
T COG0444 27 ELKKGEILGIVGESGSGKSVLAK-AIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM 105 (316)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHH-HHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChh
Confidence 57899999999999999999954 4555553 2 3467888888644321 3445677776632 12221
Q ss_pred C-HHHHHHHHHHHHh-----------cCCcceEEEec---ccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567 205 N-GEMALEIADRMCR-----------SGAIDLICVDS---VSALTPRAEIEGEIGMQQIGLQARLM-------------- 255 (440)
Q Consensus 205 ~-~ee~l~~i~~l~~-----------~~~~~lvVIDs---l~~l~~~~el~~~~g~~q~~~~ar~l-------------- 255 (440)
+ .+++.+.+..... ..-.+.|-|+. +...+| .+++| |++|+...|-++
T Consensus 106 ~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSG--GMrQRV~IAmala~~P~LlIADEPTT 182 (316)
T COG0444 106 TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSG--GMRQRVMIAMALALNPKLLIADEPTT 182 (316)
T ss_pred hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCC--cHHHHHHHHHHHhCCCCEEEeCCCcc
Confidence 1 2233222221100 00122344443 445564 77887 888888887776
Q ss_pred -------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEe
Q 013567 256 -------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 310 (440)
Q Consensus 256 -------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~ 310 (440)
.+++..|+.+.++.|+++|+|||+...+..+++...++-.|+.++......++-.
T Consensus 183 ALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~ 244 (316)
T COG0444 183 ALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcC
Confidence 5788888999999999999999999888888888888888888887776555443
No 204
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.9e-09 Score=106.82 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=86.3
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccce--eecCCCCHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENL--IVCQPDNGEM 208 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l--~i~~~~~~ee 208 (440)
-=|++|++++|.|+||+||||| ++++++...+..|.+++++..... ..+.+.+|+.+++. .++.. ++.+
T Consensus 27 l~i~~Ge~v~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~-tv~~ 104 (288)
T PRK13643 27 LEVKKGSYTALIGHTGSGKSTL-LQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE-TVLK 104 (288)
T ss_pred EEEcCCCEEEEECCCCChHHHH-HHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccc-hHHH
Confidence 4578999999999999999999 999999999999999999876421 12455678877764 23332 3333
Q ss_pred HHHH---------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567 209 ALEI---------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 209 ~l~~---------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
.+.. +.+++. .+-++ .+.... ...+++ |++|+...++++
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~l~-----~~~L~~~~~~~~-~~~LSg--GqkqrvaiA~aL~~~p~illLDEPt~gLD 176 (288)
T PRK13643 105 DVAFGPQNFGIPKEKAEKIAAEKLE-----MVGLADEFWEKS-PFELSG--GQMRRVAIAGILAMEPEVLVLDEPTAGLD 176 (288)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHH-----HcCCChhhccCC-cccCCH--HHHHHHHHHHHHHhCCCEEEEECCccCCC
Confidence 2221 111111 11221 111111 234444 777777777776
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
...+..+...+++.+.|||+++|..+.+..
T Consensus 177 ~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~ 209 (288)
T PRK13643 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVAD 209 (288)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 223333333334468999999999875543
No 205
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=1.9e-09 Score=103.44 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=51.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
|.+|++++|.|+||+||||| ++++.+...+..|.++++++..... ...+.+++.+++..++...++.+
T Consensus 22 i~~Ge~~~i~G~nG~GKStL-l~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVL-LETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 57999999999999999999 9999999999999999998754321 12345777776655554444433
No 206
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=2.3e-09 Score=105.60 Aligned_cols=59 Identities=22% Similarity=0.381 Sum_probs=47.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l 198 (440)
=+++|++++|.|+||+||||| ++++++...+..|.+++++..... ..+.+.+|+.+++.
T Consensus 26 ~i~~Ge~~~i~G~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 87 (277)
T PRK13652 26 IAPRNSRIAVIGPNGAGKSTL-FRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNP 87 (277)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCc
Confidence 468999999999999999999 999999999999999998875432 12445677776653
No 207
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.01 E-value=2.1e-09 Score=108.62 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=99.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCCCCCh---hh----hhhhccccccee--ecCCCCH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEHAFDP---SY----SKALGVDVENLI--VCQPDNG 206 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~~~~~---~~----a~~lGv~~~~l~--i~~~~~~ 206 (440)
=|++|++++|+|+|||||||| ++++.++..+. .|.++++++..... .+ .+.+++.+++.. +.+..+.
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL-~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 116 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQT-AFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRV 116 (330)
T ss_pred EEcCCCEEEEECCCCchHHHH-HHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCH
Confidence 478999999999999999999 89999998875 88899998764321 11 235777777642 2222333
Q ss_pred HH-H---------------HHHHHHHHhcCCcceEEEecc---cccCCchhhcccchhhhHHHHHHHH------------
Q 013567 207 EM-A---------------LEIADRMCRSGAIDLICVDSV---SALTPRAEIEGEIGMQQIGLQARLM------------ 255 (440)
Q Consensus 207 ee-~---------------l~~i~~l~~~~~~~lvVIDsl---~~l~~~~el~~~~g~~q~~~~ar~l------------ 255 (440)
.+ + ...+.+++. .+-++.. ...++ .++++ |++|+...++++
T Consensus 117 ~~~i~~~~~~~~~~~~~~~~~~~~~~L~-----~vgL~~~~~~~~~~p-~~LSg--G~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 117 GEQLMEVLMLHKGMSKAEAFEESVRMLD-----AVKMPEARKRMKMYP-HEFSG--GMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HcCCCChHHHhcCCc-ccCCH--HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 22 1 122222222 2222211 11232 56665 888888888887
Q ss_pred ---------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec
Q 013567 256 ---------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA 303 (440)
Q Consensus 256 ---------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a 303 (440)
.+++..|..+.++.+.|||+|+|....+..+++.......|+.+....
T Consensus 189 ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 189 TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred CccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 345555666666679999999999876655555555566666655443
No 208
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=1.4e-09 Score=102.39 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=51.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
-+++| +++|.||||+||||| +++++++..+..|.++++++.... ..+.+.+++.+++..++...++.+.
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTL-MRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence 46789 999999999999999 999999999999999998875432 2234567777766555444454433
No 209
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.01 E-value=1.8e-09 Score=118.02 Aligned_cols=153 Identities=13% Similarity=0.109 Sum_probs=100.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccce--eecCCCCHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENL--IVCQPDNGEMAL 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l--~i~~~~~~ee~l 210 (440)
-+++|++++|+|+|||||||| ++++.++.++..|.++++++..... .+.+.+++.+++. .+....++.+.+
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTL-lk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l 424 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTT-GRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI 424 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence 478999999999999999999 9999999999999999988653221 1234678877764 233334444433
Q ss_pred HH----------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567 211 EI----------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 211 ~~----------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------------ 255 (440)
.. +.+++ +.+-++ ...... ..++++ |++|+...++++
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~L-----~~~gL~~~~~~~~-~~~LSg--GqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 425 MEPLRVHGLLPGKAAAARVAWLL-----ERVGLLPEHAWRY-PHEFSG--GQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH-----HHcCCCHHHhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 21 11121 122232 222222 256666 888888888887
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
.+++..|..+.++.+.|||+++|..+.+...++.......|+...
T Consensus 497 ~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~ 544 (623)
T PRK10261 497 SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544 (623)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 344555555556679999999999887665555555555555543
No 210
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=2.3e-09 Score=100.60 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=51.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
-+++|++++|.|+||+||||| ++++.+... +..|.+++++...... .+.+.+++.+++..++...++.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 103 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTL-LKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRET 103 (202)
T ss_pred EECCCcEEEEECCCCCCHHHH-HHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHH
Confidence 478999999999999999999 999999988 7789999988754322 234457776665444444454443
No 211
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=2.1e-09 Score=103.55 Aligned_cols=137 Identities=15% Similarity=0.225 Sum_probs=84.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC-----C----hhhhhhhcccccceeecCCCCHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF-----D----PSYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~-----~----~~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
-+.+|++++|.||||+||||| ++++++...+..|.++++++... . ..+.+.+++.+++..++...++.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 102 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSL-LRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN 102 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHH
Confidence 467999999999999999999 99999999999999999987531 1 1134567777776655544454433
Q ss_pred HHH----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567 210 LEI----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 210 l~~----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------ 255 (440)
+.. +..++. .+-++...... ...+++ |++|+...+|++
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llilDEPt~~LD~ 174 (242)
T PRK11124 103 LIEAPCRVLGLSKDQALARAEKLLE-----RLRLKPYADRF-PLHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH-----HcCChhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCcCCH
Confidence 321 111111 11122111111 133443 666766666665
Q ss_pred --HHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 256 --SQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
...+..+....++.+.|||+++|....+.
T Consensus 175 ~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 205 (242)
T PRK11124 175 EITAQIVSIIRELAETGITQVIVTHEVEVAR 205 (242)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 22333333333456899999999977553
No 212
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=1.1e-09 Score=107.72 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=82.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----hhhhhhhccccccee-ecCCCCHHHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----PSYSKALGVDVENLI-VCQPDNGEMALE-- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----~~~a~~lGv~~~~l~-i~~~~~~ee~l~-- 211 (440)
=|++|++++|.|+||+||||| ++++.++.++..|.+++++..... ..+.+.+|+.+++.. .+...++.+.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 102 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTL-ALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG 102 (274)
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhh
Confidence 478999999999999999999 999999999999999999875432 123456777666532 122223322221
Q ss_pred -------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHH
Q 013567 212 -------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQA 258 (440)
Q Consensus 212 -------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~ 258 (440)
.+..++.. +-++...... ..++++ |++|+...++++ ...
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~-----~gl~~~~~~~-~~~LS~--G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 174 (274)
T PRK13644 103 PENLCLPPIEIRKRVDRALAE-----IGLEKYRHRS-PKTLSG--GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174 (274)
T ss_pred HHHcCCCHHHHHHHHHHHHHH-----CCCHHHhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11222111 1122211111 133443 677777777766 223
Q ss_pred HHHHHHHHHhcCCEEEEEecccccc
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
+..+...+++.+.|||+++|..+.+
T Consensus 175 l~~~l~~l~~~g~til~~tH~~~~~ 199 (274)
T PRK13644 175 VLERIKKLHEKGKTIVYITHNLEEL 199 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHH
Confidence 3333333345689999999998755
No 213
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=3.2e-09 Score=104.05 Aligned_cols=59 Identities=24% Similarity=0.460 Sum_probs=47.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l 198 (440)
-|++|++++|.||||+||||| ++++++...+..|.+++++...... .+.+.+++.+++.
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 92 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTI-AKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNP 92 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeCh
Confidence 478999999999999999999 9999999999999999998754321 2345577766654
No 214
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.00 E-value=1.8e-09 Score=100.83 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+.+|++++|.||||+||||| ++++.+...+..|.++++++.... ..+.+.+++.+++..+....++.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTL-LRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE 92 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHH
Confidence 377999999999999999999 999999999999999998875322 123345666665544433334433
No 215
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.00 E-value=1.1e-09 Score=106.69 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=46.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhccccccee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLI 199 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~ 199 (440)
-+++|++++|.|+||+||||| ++++++..++..|.++++++.... ..+.+.+++.+++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 86 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTL-LRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSS 86 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCc
Confidence 467999999999999999999 999999999999999998864322 123345666665543
No 216
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=1.7e-09 Score=106.85 Aligned_cols=59 Identities=20% Similarity=0.399 Sum_probs=48.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC-C----hhhhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF-D----PSYSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~-~----~~~a~~lGv~~~~l 198 (440)
=|++|++++|.|+||+||||| ++++.++..+..|.++++++... . ..+.+.+|+.+++.
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTL-l~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~ 91 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTL-FQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDP 91 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCc
Confidence 468999999999999999999 99999999999999999987642 1 12445678877764
No 217
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.00 E-value=3.7e-10 Score=107.21 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=54.3
Q ss_pred CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcc--cccceeecCC
Q 013567 128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGV--DVENLIVCQP 203 (440)
Q Consensus 128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv--~~~~l~i~~~ 203 (440)
|+..+|.+- =-+++|++++|.||||+||||| ++++.+..+|+.|.+++.+++.... ....+.|+ .+|+..+++.
T Consensus 16 Gl~Al~~Vs-l~v~~Gei~~LIGPNGAGKTTl-fNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 16 GLTAVNDVS-LEVRPGEIVGLIGPNGAGKTTL-FNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred CEEEEecee-EEEcCCeEEEEECCCCCCceee-eeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence 344444432 3578999999999999999999 9999999999999999999964332 22223333 3455444444
Q ss_pred CCH
Q 013567 204 DNG 206 (440)
Q Consensus 204 ~~~ 206 (440)
.++
T Consensus 94 lTV 96 (250)
T COG0411 94 LTV 96 (250)
T ss_pred CcH
Confidence 443
No 218
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.99 E-value=3.8e-09 Score=97.41 Aligned_cols=114 Identities=19% Similarity=0.171 Sum_probs=76.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCH--HHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNG--EMALEIADRM 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~--ee~l~~i~~l 216 (440)
-+++|++++|.||||+||||| ++++.+...+..|.+++++.. +++.+++.. .+. .+.+..++.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~---------i~~~~q~~~----LSgGq~qrv~laral 86 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTA-VKILAGQLIPNGDNDEWDGIT---------PVYKPQYID----LSGGELQRVAIAAAL 86 (177)
T ss_pred EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCCcEEEECCEE---------EEEEcccCC----CCHHHHHHHHHHHHH
Confidence 568999999999999999999 999999999999999987642 333333322 332 2344555555
Q ss_pred HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
+. +++++++|....-.... .. ..+...+..+.++.+.|||+++|..+.+.
T Consensus 87 ~~--~p~lllLDEPts~LD~~-------------~~---~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 87 LR--NATFYLFDEPSAYLDIE-------------QR---LNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred hc--CCCEEEEECCcccCCHH-------------HH---HHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 43 67899999877655311 01 12222333333444589999999986553
No 219
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.99 E-value=1e-09 Score=104.12 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=51.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h----hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P----SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~----~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
=+++|++++|.|+||+||||| ++++.+...+..|.+++++..... + .+.+.+++.+++..++...++.+
T Consensus 27 ~i~~G~~~~I~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTL-LTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQ 101 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHH
Confidence 368999999999999999999 999999998999999998875421 1 13456777776655444334433
No 220
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=3.1e-09 Score=104.78 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=49.0
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----hhhhhhhcccccce
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----PSYSKALGVDVENL 198 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----~~~a~~lGv~~~~l 198 (440)
=-|++|++++|.|+||+||||| ++++.+...+..|.++++++.... ..+.+.+|+.+++.
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~ 94 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTI-AKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP 94 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecCh
Confidence 3578999999999999999999 999999999999999999876533 12345677777653
No 221
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.99 E-value=2.5e-09 Score=102.23 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=45.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEEcCCCCCChhh-hhhhcccccce
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLVDAEHAFDPSY-SKALGVDVENL 198 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~id~E~~~~~~~-a~~lGv~~~~l 198 (440)
+++|++++|.||||+||||| ++++++...+ ..|.++++++....... .+.+++.+++.
T Consensus 9 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 71 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLT-CLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNP 71 (230)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCc
Confidence 67999999999999999999 9999999987 78889998865432222 24567766654
No 222
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.99 E-value=5.3e-09 Score=96.33 Aligned_cols=128 Identities=20% Similarity=0.293 Sum_probs=80.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhccccc--------cee--ecCCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVE--------NLI--VCQPDN 205 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~--------~l~--i~~~~~ 205 (440)
-+++|++++|.|+||+||||| ++++.+...+..|.++++++.... . .+.+.+++.++ ... .....+
T Consensus 21 ~i~~G~~~~l~G~nGsGKStL-l~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTL-LKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 478999999999999999999 999999999999999998865432 1 12333444322 100 011122
Q ss_pred H--HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 206 G--EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 206 ~--ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
. .+.+.+++.++. +++++++|....-.... .. ..+...|..+.++.+.|||+++|..+.+
T Consensus 100 ~G~~qrl~laral~~--~p~llllDEP~~~LD~~-------------~~---~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQ--EPPILLLDEPTSHLDIA-------------HQ---IELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHH-------------HH---HHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 233445555543 68899999877655311 01 1222333334344489999999998755
Q ss_pred cc
Q 013567 284 GV 285 (440)
Q Consensus 284 g~ 285 (440)
..
T Consensus 162 ~~ 163 (180)
T cd03214 162 AR 163 (180)
T ss_pred HH
Confidence 43
No 223
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=3.5e-09 Score=102.66 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=51.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCC----Ch-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAF----DP-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~----~~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.||||+||||| ++++++...+ ..|.++++++... .. .+.+.+++.+++..++...++.+
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 104 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTL-LRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYD 104 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHH
Confidence 578999999999999999999 9999999876 3889999887543 11 23456777777655554444443
Q ss_pred H
Q 013567 209 A 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 105 n 105 (253)
T PRK14267 105 N 105 (253)
T ss_pred H
Confidence 3
No 224
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=2.1e-09 Score=108.57 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=96.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCcEEEEcCCCCCCh---hh----hhhhccccccee--ecCCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK----LGGNAMLVDAEHAFDP---SY----SKALGVDVENLI--VCQPDN 205 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~----~~~~vv~id~E~~~~~---~~----a~~lGv~~~~l~--i~~~~~ 205 (440)
-|.+|++++|+|+|||||||| ++++.++.. +..|.++++++..... .+ .+.+++.+++.. +.+..+
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTL-l~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~t 107 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLI-AKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSER 107 (330)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCcccc
Confidence 478999999999999999999 899999875 4678899988754321 11 235777777643 222233
Q ss_pred HHHHHH---------------------HHHHHHhcCCcceEEEec---ccccCCchhhcccchhhhHHHHHHHH------
Q 013567 206 GEMALE---------------------IADRMCRSGAIDLICVDS---VSALTPRAEIEGEIGMQQIGLQARLM------ 255 (440)
Q Consensus 206 ~ee~l~---------------------~i~~l~~~~~~~lvVIDs---l~~l~~~~el~~~~g~~q~~~~ar~l------ 255 (440)
+.+.+. .+.+++ +.+-++. +..-. ..++++ |++|+...++++
T Consensus 108 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L-----~~~gL~~~~~~~~~~-p~~LSg--G~~QRv~iArAL~~~P~l 179 (330)
T PRK15093 108 VGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELL-----HRVGIKDHKDAMRSF-PYELTE--GECQKVMIAIALANQPRL 179 (330)
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHH-----HHCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHCCCCE
Confidence 322221 111111 1222221 11222 245665 888888888887
Q ss_pred ---------------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 256 ---------------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 256 ---------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
.+++..|..+.++.++|||+|+|....+..+++.......|+.+..
T Consensus 180 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 3445555555555799999999998776555555555556655443
No 225
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.99 E-value=1.7e-09 Score=101.60 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=49.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~e 207 (440)
-+++|++++|.|+||+||||| ++++.+...+..|.++++++.... ..+.+.+++.+++..+....++.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSL-LRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL 92 (204)
T ss_pred EECCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHH
Confidence 478999999999999999999 999999999999999998865432 12334555555544333333443
No 226
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=2.9e-09 Score=107.08 Aligned_cols=137 Identities=16% Similarity=0.142 Sum_probs=85.0
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------------------hhhhhhhcccccce
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------------------PSYSKALGVDVENL 198 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------------------~~~a~~lGv~~~~l 198 (440)
=-|++|++++|+|+|||||||| ++++.++..+..|.+++++..... ..+.+.+|+.+++.
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTL-l~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~ 125 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTL-VTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFP 125 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECc
Confidence 4578999999999999999999 999999999999999998754321 12455678877653
Q ss_pred --eecCCCCHHHHH---------------HHHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----
Q 013567 199 --IVCQPDNGEMAL---------------EIADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM----- 255 (440)
Q Consensus 199 --~i~~~~~~ee~l---------------~~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l----- 255 (440)
.++. .++.+.+ ..+..++. .+-++ .+..-. ..++++ |++|+...+|++
T Consensus 126 ~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~-~~~LSg--GqkqRvaiAraL~~~p~ 196 (320)
T PRK13631 126 EYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLN-----KMGLDDSYLERS-PFGLSG--GQKRRVAIAGILAIQPE 196 (320)
T ss_pred hhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHH-----HcCCChhHhcCC-cccCCH--HHHHHHHHHHHHHcCCC
Confidence 2332 2332222 12222222 12222 111111 134444 788888888876
Q ss_pred ---------------HHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 256 ---------------SQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 256 ---------------~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
.+.+..+...+++.+.|||+++|..+.+.
T Consensus 197 iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~ 240 (320)
T PRK13631 197 ILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL 240 (320)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 22333333333345899999999987543
No 227
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.99 E-value=2.8e-09 Score=104.43 Aligned_cols=142 Identities=17% Similarity=0.217 Sum_probs=85.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh------hhhhhhcccccce--eecCCCCHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP------SYSKALGVDVENL--IVCQPDNGEMAL 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~------~~a~~lGv~~~~l--~i~~~~~~ee~l 210 (440)
-|.+|++++|.||||+||||| ++++.+...+..|.+++++...... .+.+.+++.+++. .+....+..+.+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l 112 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTL-ARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII 112 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHH
Confidence 468999999999999999999 9999999989999999988754321 1345677777764 233333333322
Q ss_pred H----------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-------------------
Q 013567 211 E----------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------- 255 (440)
Q Consensus 211 ~----------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------- 255 (440)
. .+..++...++.- .+.... ...+++ |++++...++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----~~~~~~-~~~LS~--Ge~qrl~laral~~~p~lllLDEPt~~LD~~ 185 (268)
T PRK10419 113 REPLRHLLSLDKAERLARASEMLRAVDLDD----SVLDKR-PPQLSG--GQLQRVCLARALAVEPKLLILDEAVSNLDLV 185 (268)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHcCCCh----hHhhCC-CccCCh--HHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 1 1122222111110 011111 123333 777777777766
Q ss_pred --HHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 256 --SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
..++..|..+.++.+.|||+++|..+.+...++
T Consensus 186 ~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 186 LQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQ 220 (268)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCC
Confidence 123334444545568999999999876644333
No 228
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.99 E-value=2.5e-09 Score=99.70 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=39.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
=+++|++++|.|+||+||||| ++++++...+..|.++++++..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~i 64 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSL-LRMIAGIMQPSSGNIYYKNCNI 64 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCccc
Confidence 467999999999999999999 9999999999999999998754
No 229
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.98 E-value=1.9e-09 Score=105.58 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=47.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l 198 (440)
-+++|++++|.||||+||||| ++++++...+..|.++++++..... .+.+.+++.+++.
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 96 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTL-AKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP 96 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCc
Confidence 578999999999999999999 9999999999999999988654321 1234577766653
No 230
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.98 E-value=2.7e-09 Score=113.89 Aligned_cols=153 Identities=13% Similarity=0.119 Sum_probs=94.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hh--hhhhhcccccceeecCCCCHHHHHH---
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PS--YSKALGVDVENLIVCQPDNGEMALE--- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~--~a~~lGv~~~~l~i~~~~~~ee~l~--- 211 (440)
-+++|++++|.|||||||||| ++++++...+..|.++++++.... .. ..+.+|+.+++..++...++.+.+.
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 111 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTL-MKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL 111 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccc
Confidence 478999999999999999999 999999999999999998865322 11 1234677777655544445444322
Q ss_pred --------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHH
Q 013567 212 --------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMS 263 (440)
Q Consensus 212 --------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~ 263 (440)
.+..++...+ ++...... ..++++ |++|+...++++ ...+..+.
T Consensus 112 ~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l 183 (510)
T PRK15439 112 PKRQASMQKMKQLLAALG-----CQLDLDSS-AGSLEV--ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183 (510)
T ss_pred ccchHHHHHHHHHHHHcC-----CCccccCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 1222222111 22211111 134444 677777777765 22333333
Q ss_pred HHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 264 GNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 264 ~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
...++.+.|||+++|..+.+...++.......|....
T Consensus 184 ~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 184 RELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220 (510)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 3334458999999999887665565555555665543
No 231
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=3.2e-09 Score=107.05 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=98.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEEcCCCCCCh---hh----hhhhccccccee--ecCCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLVDAEHAFDP---SY----SKALGVDVENLI--VCQPDN 205 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~id~E~~~~~---~~----a~~lGv~~~~l~--i~~~~~ 205 (440)
-|++|++++|+|+|||||||| ++++.++..+ ..|.+++++++.... .+ .+.+++.+++.. +.+..+
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL-~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~ 107 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVS-SLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT 107 (326)
T ss_pred EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCC
Confidence 578999999999999999999 8899998763 578899998764322 11 234777777642 222233
Q ss_pred HH-HHHH---------------HHHHHHhcCCcceEEEec---ccccCCchhhcccchhhhHHHHHHHH-----------
Q 013567 206 GE-MALE---------------IADRMCRSGAIDLICVDS---VSALTPRAEIEGEIGMQQIGLQARLM----------- 255 (440)
Q Consensus 206 ~e-e~l~---------------~i~~l~~~~~~~lvVIDs---l~~l~~~~el~~~~g~~q~~~~ar~l----------- 255 (440)
+. ++.+ .+.++++ .+-++. ....+ ..++++ |++|+...++++
T Consensus 108 v~~~i~~~l~~~~~~~~~~~~~~~~~~L~-----~~gL~~~~~~l~~~-p~~LSg--Gq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLN-----QVGIPDPASRLDVY-PHQLSG--GMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HCCCCChHHHHhCC-chhCCH--HHHHHHHHHHHHHhCCCEEEEeC
Confidence 32 2111 1222222 222221 11222 256665 888888888887
Q ss_pred ----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567 256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~ 302 (440)
.+++..|..+.++.+.|||+++|....+..+++.......|+.+...
T Consensus 180 Pts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 180 PTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 34555566666668999999999987665555555556666665543
No 232
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=4.4e-09 Score=101.77 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=51.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
-+++|++++|.|+||+||||| ++++++...+ ..|.+++++..... ..+.+.+|+.+++..+....++.+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~en 102 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTL-LRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFEN 102 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHH
Confidence 467999999999999999999 9999999863 57889998875432 1234567777776544444444443
No 233
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=3.2e-09 Score=104.60 Aligned_cols=138 Identities=14% Similarity=0.208 Sum_probs=84.0
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccce--eecCCCCHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENL--IVCQPDNGEM 208 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l--~i~~~~~~ee 208 (440)
=-|++|++++|.||||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++. .+.. .++.+
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e 105 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTI-MQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLK 105 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHH
Confidence 3578999999999999999999 999999999999999998865321 12345677777663 2232 34433
Q ss_pred HHHH---------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567 209 ALEI---------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 209 ~l~~---------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
.+.. +..++. .+-++ ...... ..++++ |++|+...++++
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD 177 (280)
T PRK13649 106 DVAFGPQNFGVSQEEAEALAREKLA-----LVGISESLFEKN-PFELSG--GQMRRVAIAGILAMEPKILVLDEPTAGLD 177 (280)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH-----HcCCChhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 3221 111111 11121 111111 134444 777777777776
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
.+.+..+....++.+.|||+++|..+.+..
T Consensus 178 ~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~ 210 (280)
T PRK13649 178 PKGRKELMTLFKKLHQSGMTIVLVTHLMDDVAN 210 (280)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 223333333233458999999999875543
No 234
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.97 E-value=2.1e-09 Score=98.76 Aligned_cols=124 Identities=18% Similarity=0.166 Sum_probs=83.0
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHH-------
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEM------- 208 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee------- 208 (440)
=-+++|++++|.|+||+||||| ++++.+...+..|.+++++..... ..+.+.+++.+++..+.. .++.+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i~~~LS 100 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTL-LQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNLGRRFS 100 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhhcccCC
Confidence 3578999999999999999999 999999999999999998864321 123455777776655443 23322
Q ss_pred -----HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 209 -----ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 209 -----~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
.+.+++.++ .+++++++|....-.... ..+.+.+.++ .+ . .+.|||+++|..+.+
T Consensus 101 ~G~~qrv~laral~--~~p~~lllDEP~~~LD~~-------------~~~~l~~~l~---~~-~-~~~tii~~sh~~~~~ 160 (178)
T cd03247 101 GGERQRLALARILL--QDAPIVLLDEPTVGLDPI-------------TERQLLSLIF---EV-L-KDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEECCcccCCHH-------------HHHHHHHHHH---HH-c-CCCEEEEEecCHHHH
Confidence 233444444 368899999887665310 0112333333 33 2 379999999998754
No 235
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.97 E-value=4.6e-09 Score=100.12 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=44.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccc
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVEN 197 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~ 197 (440)
+.+|++++|.|+|||||||| ++++++...+..|.++++++... ...+.+++.+++
T Consensus 3 i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~ 57 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTL-LRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQR 57 (223)
T ss_pred cCCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCccch--HhhCcEEEeccc
Confidence 67999999999999999999 99999999999999999987532 123345665554
No 236
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.97 E-value=2.8e-09 Score=101.16 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=96.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHH-------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE------- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~------- 211 (440)
-+++|++.++.|+||+||||. ++++.++..+..|.+-+++.. ..+....++|+-|+.--+++..++++.+.
T Consensus 24 ~v~~G~i~GllG~NGAGKTTt-fRmILglle~~~G~I~~~g~~-~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG 101 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTT-FRMILGLLEPTEGEITWNGGP-LSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG 101 (300)
T ss_pred eecCCeEEEeecCCCCCccch-HHHHhccCCccCceEEEcCcc-hhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcC
Confidence 468999999999999999999 999999999988888877653 33444567788776544444444332211
Q ss_pred ---------------------------------------HHHHHHhcCCcceEEEecc-cccCCchhhcccchhhhHHHH
Q 013567 212 ---------------------------------------IADRMCRSGAIDLICVDSV-SALTPRAEIEGEIGMQQIGLQ 251 (440)
Q Consensus 212 ---------------------------------------~i~~l~~~~~~~lvVIDsl-~~l~~~~el~~~~g~~q~~~~ 251 (440)
.+..+ -+.++++++|.. +.+-| . .
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisav--iHePeLlILDEPFSGLDP-V-------------N 165 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAV--IHEPELLILDEPFSGLDP-V-------------N 165 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHH--hcCCCEEEecCCccCCCh-h-------------h
Confidence 11111 146888998863 22322 0 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567 252 ARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 252 ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~ 302 (440)
.+.++....-.++.|.||||.+|.++.+..+|++......|..+-+.
T Consensus 166 ----~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G 212 (300)
T COG4152 166 ----VELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212 (300)
T ss_pred ----HHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEec
Confidence 23344444555788999999999999998888777666666655443
No 237
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.97 E-value=4.1e-10 Score=103.88 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=109.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhh-hhcccccceeecCCCCHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSK-ALGVDVENLIVCQPDNGEMALEIAD 214 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~-~lGv~~~~l~i~~~~~~ee~l~~i~ 214 (440)
.+.+|+++++.||||+||||. ..++.++.+++.|.++++..+..... +++ .+|+-++.-.++...++++.+..+-
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~-Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vl 104 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTT-FYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVL 104 (243)
T ss_pred EEcCCcEEEEECCCCCCceeE-EEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHH
Confidence 467999999999999999998 99999999999999999999865543 222 3677788888877777766544322
Q ss_pred HHHhcC------C------cceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHH
Q 013567 215 RMCRSG------A------IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKM 262 (440)
Q Consensus 215 ~l~~~~------~------~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L 262 (440)
+..... . .+-+-|..+..-. ...++| |++.+...||++ -.-++++
T Consensus 105 E~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~-a~sLSG--GERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~i 181 (243)
T COG1137 105 EIREKDLKKAERKEELDALLEEFHITHLRDSK-AYSLSG--GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRI 181 (243)
T ss_pred hhhhcchhHHHHHHHHHHHHHHhchHHHhcCc-cccccc--chHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHH
Confidence 221100 0 0111122222211 133344 666666777776 2456777
Q ss_pred HHHHHhcCCEEEEEeccccccccccCCceeecccceeeeece
Q 013567 263 SGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFAS 304 (440)
Q Consensus 263 ~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~ 304 (440)
...++..|+-|+++.|..++.-..++....+..|..+.+...
T Consensus 182 I~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p 223 (243)
T COG1137 182 IKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSP 223 (243)
T ss_pred HHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCH
Confidence 888889999999999997665556666666666766666543
No 238
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.97 E-value=2.5e-09 Score=100.22 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=51.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-----hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-----SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-----~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.||||+||||| ++++++...+..|.++++++.... . .+.+.+++.++...++...++.+
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 95 (206)
T TIGR03608 20 TIEKGKMYAIIGESGSGKSTL-LNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEE 95 (206)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHH
Confidence 367999999999999999999 999999999999999999876321 1 13445777666655444444433
No 239
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.97 E-value=4.2e-09 Score=101.75 Aligned_cols=68 Identities=21% Similarity=0.385 Sum_probs=51.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-----GNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-----~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|+||+||||| ++++.+...+. .|.+++++..... . .+.+.+++.+++..++. .++.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 100 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTL-LRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYD 100 (247)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHH
Confidence 478999999999999999999 99999999876 8999998875432 1 23456787777655444 44433
No 240
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.97 E-value=4.9e-09 Score=100.01 Aligned_cols=135 Identities=18% Similarity=0.231 Sum_probs=83.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecCCCCHHHHHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQPDNGEMALEIA-- 213 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i-- 213 (440)
=+++|++++|.||||+||||| ++++.+...+..|.++++++.... . .+.+.+++.+++..+++ .++.+.+...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~ 106 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTL-LKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQ 106 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHh
Confidence 478999999999999999999 999999999999999998865322 1 23456777776655443 3444333211
Q ss_pred -----------HHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH--------------------HHHH-H
Q 013567 214 -----------DRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQAL-R 260 (440)
Q Consensus 214 -----------~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l-~ 260 (440)
..++. .+-++ .+.... ..++++ |++++...++++ .+.+ .
T Consensus 107 ~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (225)
T PRK10247 107 IRNQQPDPAIFLDDLE-----RFALPDTILTKN-IAELSG--GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178 (225)
T ss_pred hcCCChHHHHHHHHHH-----HcCCChHHhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11111 11111 111111 133333 667777777765 2233 3
Q ss_pred HHHHHHHhcCCEEEEEecccccc
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~i 283 (440)
.|..+.++.+.|||+++|..+.+
T Consensus 179 ~l~~~~~~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 179 IIHRYVREQNIAVLWVTHDKDEI 201 (225)
T ss_pred HHHHHHHhcCCEEEEEECChHHH
Confidence 34444455689999999997644
No 241
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=4.5e-09 Score=102.29 Aligned_cols=140 Identities=17% Similarity=0.244 Sum_probs=82.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|+|||||||| ++++.+...+ ..|.+++++..... . .+.+.+++.+++..++. .++.+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 111 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTF-IRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYD 111 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHH
Confidence 478999999999999999999 9999998764 67889998765321 1 23456787777655544 45444
Q ss_pred HHHHH---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567 209 ALEIA---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 209 ~l~~i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------ 255 (440)
.+... ..++...+..-. ++..... +...+++ |++|+...+|++
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~-~~~~LSg--G~~qrv~laral~~~p~llllDEPt~~LD~ 187 (258)
T PRK14268 112 NVAYGPRIHGANKKDLDGVVENALRSAALWDE-TSDRLKS-PALSLSG--GQQQRLCIARTLAVKPKIILFDEPTSALDP 187 (258)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc-hhhhhcC-ChhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 33321 111111111000 0111011 1134443 777877778776
Q ss_pred --HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 --SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
...+.++...+++ ++|||+++|..+.+..
T Consensus 188 ~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~ 218 (258)
T PRK14268 188 ISTARIEDLIMNLKK-DYTIVIVTHNMQQAAR 218 (258)
T ss_pred HHHHHHHHHHHHHhh-CCEEEEEECCHHHHHH
Confidence 2233333333333 7999999999875543
No 242
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.97 E-value=2.5e-09 Score=112.59 Aligned_cols=162 Identities=18% Similarity=0.205 Sum_probs=111.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC----CcEEEEcCCCCCChh-------hhhhhcccccce-eecCC-CC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG----GNAMLVDAEHAFDPS-------YSKALGVDVENL-IVCQP-DN 205 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~----~~vv~id~E~~~~~~-------~a~~lGv~~~~l-~i~~~-~~ 205 (440)
-+.+|++++|+|.+||||||+ .+.+.++...+ +|.+++++.+..... +.+++++.+++- ..+.| .+
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~-a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~t 109 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTL-ALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMT 109 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHH-HHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhh
Confidence 467999999999999999999 56666776655 688888887433221 345567776652 22223 11
Q ss_pred ----------------HHHHHHHHHHHHhcCCcceEEEeccc--ccCCchhhcccchhhhHHHHHHHH------------
Q 013567 206 ----------------GEMALEIADRMCRSGAIDLICVDSVS--ALTPRAEIEGEIGMQQIGLQARLM------------ 255 (440)
Q Consensus 206 ----------------~ee~l~~i~~l~~~~~~~lvVIDsl~--~l~~~~el~~~~g~~q~~~~ar~l------------ 255 (440)
.++....+.++++ .|-+..-. ..+| .+++| |++|+...|+++
T Consensus 110 Ig~Qi~E~~~~h~~~~~~ea~~~a~elL~-----~Vgl~~~~~~~~yP-heLSG--G~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 110 IGDQIREALRLHGKGSRAEARKRAVELLE-----QVGLPDPERRDRYP-HQLSG--GMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHH-----HcCCCChhhhccCC-cccCc--hHHHHHHHHHHHhCCCCEEEECCC
Confidence 2333333333333 22232222 2354 78887 889988888887
Q ss_pred ---------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEE
Q 013567 256 ---------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEI 309 (440)
Q Consensus 256 ---------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l 309 (440)
.+++..|+.+.++.|+++|+|||+...+..+++...++-.|..++......++-
T Consensus 182 TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 578888999999999999999999998888777777777888877766544443
No 243
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.96 E-value=4.9e-09 Score=93.24 Aligned_cols=108 Identities=20% Similarity=0.262 Sum_probs=73.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH--HHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE--MALEIADRM 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e--e~l~~i~~l 216 (440)
-+++|+++.|.|+||+||||| ++++.+...+..|.+++++. ..+++.++ .+.- +.+.+++.+
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~~G~i~~~~~--------~~i~~~~~-------lS~G~~~rv~laral 85 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTL-LKLIAGELEPDEGIVTWGST--------VKIGYFEQ-------LSGGEKMRLALAKLL 85 (144)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCceEEEECCe--------EEEEEEcc-------CCHHHHHHHHHHHHH
Confidence 578999999999999999999 99999999999999999863 23333332 3332 334455655
Q ss_pred HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
+. +++++++|....-.... . ...+.+.+ ++.+.|||+++|..+.+.
T Consensus 86 ~~--~p~illlDEP~~~LD~~------------~-~~~l~~~l-------~~~~~til~~th~~~~~~ 131 (144)
T cd03221 86 LE--NPNLLLLDEPTNHLDLE------------S-IEALEEAL-------KEYPGTVILVSHDRYFLD 131 (144)
T ss_pred hc--CCCEEEEeCCccCCCHH------------H-HHHHHHHH-------HHcCCEEEEEECCHHHHH
Confidence 43 68899999876655310 0 11122222 233579999999876553
No 244
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=2.3e-09 Score=105.21 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=47.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----hhhhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----PSYSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l 198 (440)
-+++|++++|.||||+||||| ++++.+...+..|.+++++..... ..+.+.+++.+++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 86 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTL-FMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP 86 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeCh
Confidence 477999999999999999999 999999999999999998875421 12345677776653
No 245
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=1.9e-09 Score=106.14 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=83.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhccccccee-ecCCCCHHHHHH---
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLI-VCQPDNGEMALE--- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~-i~~~~~~ee~l~--- 211 (440)
=+.+|++++|+|+||+||||| ++++.+...+..|.++++++..... .+.+.+|+.+++.. .+...++.+.+.
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~ 107 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTT-ARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM 107 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhH
Confidence 467999999999999999999 9999999999999999998754321 23456777776532 222223332221
Q ss_pred ------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHH
Q 013567 212 ------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQA 258 (440)
Q Consensus 212 ------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~ 258 (440)
.+..++. .+-++.+.... ...+++ |++++...+|++ ..+
T Consensus 108 ~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~-~~~LS~--G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l 179 (277)
T PRK13642 108 ENQGIPREEMIKRVDEALL-----AVNMLDFKTRE-PARLSG--GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179 (277)
T ss_pred HHcCCCHHHHHHHHHHHHH-----HCCCHhHhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 1111111 11111111111 133443 666666666665 233
Q ss_pred HHHHHHHHHhcCCEEEEEecccccc
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
+..|..+.++.+.|||+++|..+.+
T Consensus 180 ~~~l~~l~~~~g~tiil~sH~~~~~ 204 (277)
T PRK13642 180 MRVIHEIKEKYQLTVLSITHDLDEA 204 (277)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 4444445555699999999998754
No 246
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=4.2e-09 Score=103.38 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=48.1
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccce
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENL 198 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l 198 (440)
--+++|++++|.||||+||||| ++++.++..+..|.++++++..... .+.+.+++.+++.
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~ 92 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTI-SKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNP 92 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCH
Confidence 4678999999999999999999 9999999999999999988754321 2345577766653
No 247
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.96 E-value=4e-09 Score=112.83 Aligned_cols=137 Identities=16% Similarity=0.118 Sum_probs=88.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc-CCCC-----CC--h--hhhhhhcccccceeecCCCCHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD-AEHA-----FD--P--SYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id-~E~~-----~~--~--~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
+++|++++|.|||||||||| ++++.++.++..|.++++ ++.. .. . .+.+.+|+.+++..+....++.+.
T Consensus 307 i~~Ge~~~l~G~NGsGKSTL-l~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 385 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTL-SKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385 (520)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence 78999999999999999999 999999998889999995 4321 11 0 123457887777555554555444
Q ss_pred HHH--------------HHHHHhcCCcceEEEec-----ccccCCchhhcccchhhhHHHHHHHH---------------
Q 013567 210 LEI--------------ADRMCRSGAIDLICVDS-----VSALTPRAEIEGEIGMQQIGLQARLM--------------- 255 (440)
Q Consensus 210 l~~--------------i~~l~~~~~~~lvVIDs-----l~~l~~~~el~~~~g~~q~~~~ar~l--------------- 255 (440)
+.. +..++. .+-++. +.... ..++++ |++|+...++++
T Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lLllDEPt~~ 457 (520)
T TIGR03269 386 LTEAIGLELPDELARMKAVITLK-----MVGFDEEKAEEILDKY-PDELSE--GERHRVALAQVLIKEPRIVILDEPTGT 457 (520)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH-----hCCCCCccchhhhhCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 332 111111 122221 11112 245555 888888888877
Q ss_pred ------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 ------SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 ------~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
..++..|..++++.+.|||+++|..+.+..
T Consensus 458 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~ 493 (520)
T TIGR03269 458 MDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLD 493 (520)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH
Confidence 234444445555679999999999876644
No 248
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.95 E-value=3e-09 Score=99.73 Aligned_cols=61 Identities=25% Similarity=0.241 Sum_probs=47.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i 200 (440)
=+++|++++|.|+||+||||| ++++.+...+..|.++++++.... ..+.+.+++.+++..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTL-LRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecccccc
Confidence 368999999999999999999 999999999999999998765322 2234456665554433
No 249
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=1.7e-09 Score=107.21 Aligned_cols=138 Identities=12% Similarity=0.146 Sum_probs=84.0
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC-------C-hhhhhhhccccccee--ecCCCCHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF-------D-PSYSKALGVDVENLI--VCQPDNGE 207 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~-------~-~~~a~~lGv~~~~l~--i~~~~~~e 207 (440)
=-+++|++++|.|||||||||| ++++.++..+..|.++++++... . ..+.+.+++.+++.. +. +.++.
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~ 109 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTM-IQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF-QETIE 109 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh-hhHHH
Confidence 3578999999999999999999 99999999999999999886532 1 123445777666531 22 12333
Q ss_pred HHHHH---------------HHHHHhcCCcceEEE-ecccccCCchhhcccchhhhHHHHHHHH----------------
Q 013567 208 MALEI---------------ADRMCRSGAIDLICV-DSVSALTPRAEIEGEIGMQQIGLQARLM---------------- 255 (440)
Q Consensus 208 e~l~~---------------i~~l~~~~~~~lvVI-Dsl~~l~~~~el~~~~g~~q~~~~ar~l---------------- 255 (440)
+.+.. +..++. .+-+ +.+.... ..++++ |++|+...+|++
T Consensus 110 enl~~~~~~~~~~~~~~~~~~~~ll~-----~~~L~~~~~~~~-~~~LS~--Gq~qrv~laral~~~p~lLlLDEPt~~L 181 (289)
T PRK13645 110 KDIAFGPVNLGENKQEAYKKVPELLK-----LVQLPEDYVKRS-PFELSG--GQKRRVALAGIIAMDGNTLVLDEPTGGL 181 (289)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH-----HcCCChhHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 32221 111111 1111 1111111 134444 777777777776
Q ss_pred ----HH-HHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 ----SQ-ALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 ----~~-~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
.+ ++..|..+.++.+.|||+++|..+.+..
T Consensus 182 D~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~ 216 (289)
T PRK13645 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLR 216 (289)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 22 3333444555568999999999875543
No 250
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.95 E-value=3.4e-09 Score=112.83 Aligned_cols=153 Identities=16% Similarity=0.212 Sum_probs=94.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-h-hhhhhcccccceeecCCCCHHHHHH---
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-S-YSKALGVDVENLIVCQPDNGEMALE--- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~-~a~~lGv~~~~l~i~~~~~~ee~l~--- 211 (440)
-+.+|++++|+|||||||||| ++++++...+..|.+++++..... . . +.+.+++.+++..++...++.+.+.
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTL-l~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 104 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTM-MKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGR 104 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcc
Confidence 467999999999999999999 999999999999999998865422 1 1 2345777776544443334433222
Q ss_pred ----------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------
Q 013567 212 ----------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------------- 255 (440)
Q Consensus 212 ----------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------------- 255 (440)
.+.+++.. +-+....... ..++++ |++|+...++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 176 (501)
T PRK10762 105 EFVNRFGRIDWKKMYAEADKLLAR-----LNLRFSSDKL-VGELSI--GEQQMVEIAKVLSFESKVIIMDEPTDALTDTE 176 (501)
T ss_pred ccccccCccCHHHHHHHHHHHHHH-----cCCCCCccCc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHH
Confidence 11222211 1122111111 234444 777777777766
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
...+.++...+++.+.|||+++|..+.+...++.......|+...
T Consensus 177 ~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 177 TESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 233333333334568999999999887766666555555665543
No 251
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.95 E-value=4.7e-09 Score=100.89 Aligned_cols=67 Identities=22% Similarity=0.424 Sum_probs=50.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~e 207 (440)
+.+|++++|.|+||+||||| ++++.+...+..|.++++++..... ...+.+++.++...+++..+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTL-LRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 77999999999999999999 9999999988899999988754322 2234566666655444433433
No 252
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=5.5e-09 Score=99.35 Aligned_cols=129 Identities=23% Similarity=0.272 Sum_probs=80.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccc-----cceeec---CCCCHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDV-----ENLIVC---QPDNGEM-- 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~-----~~l~i~---~~~~~ee-- 208 (440)
-+.+|+.++|.|+|||||||| +++++++.+|+.|.+.+++.-+ +.+.-..|+++ +|+.+. ...+.++
T Consensus 49 ~i~~Ge~vGiiG~NGaGKSTL-lkliaGi~~Pt~G~v~v~G~v~--~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~ 125 (249)
T COG1134 49 EIYKGERVGIIGHNGAGKSTL-LKLIAGIYKPTSGKVKVTGKVA--PLIELGAGFDPELTGRENIYLRGLILGLTRKEID 125 (249)
T ss_pred EEeCCCEEEEECCCCCcHHHH-HHHHhCccCCCCceEEEcceEe--hhhhcccCCCcccchHHHHHHHHHHhCccHHHHH
Confidence 468999999999999999999 9999999999999999887643 22223334443 233221 1111111
Q ss_pred -----HHHHH----------------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHH
Q 013567 209 -----ALEIA----------------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRK 261 (440)
Q Consensus 209 -----~l~~i----------------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~ 261 (440)
+.+.. -.+.....++++++|.+.+.- |. ....+...+
T Consensus 126 ~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG----------D~------~F~~K~~~r 189 (249)
T COG1134 126 EKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG----------DA------AFQEKCLER 189 (249)
T ss_pred HHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC----------CH------HHHHHHHHH
Confidence 11110 011123468999999987653 21 223444555
Q ss_pred HHHHHHhcCCEEEEEecccccccccc
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGVYY 287 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~~~ 287 (440)
+..+.+ .+.|||+++|....+...|
T Consensus 190 l~e~~~-~~~tiv~VSHd~~~I~~~C 214 (249)
T COG1134 190 LNELVE-KNKTIVLVSHDLGAIKQYC 214 (249)
T ss_pred HHHHHH-cCCEEEEEECCHHHHHHhc
Confidence 555444 4599999999988776533
No 253
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=4.4e-09 Score=103.44 Aligned_cols=60 Identities=25% Similarity=0.378 Sum_probs=48.4
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-h----hhhhhhcccccce
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-P----SYSKALGVDVENL 198 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~----~~a~~lGv~~~~l 198 (440)
=-|.+|++++|.||||+||||| ++++.+...+..|.++++++.... . .+.+.+++.+++.
T Consensus 23 l~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 87 (275)
T PRK13639 23 FKAEKGEMVALLGPNGAGKSTL-FLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeCh
Confidence 3578999999999999999999 999999999999999999876421 1 2345677777764
No 254
>PRK04296 thymidine kinase; Provisional
Probab=98.95 E-value=1.2e-08 Score=95.16 Aligned_cols=137 Identities=16% Similarity=0.216 Sum_probs=91.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC--CCC-CChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA--EHA-FDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS 219 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~--E~~-~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~ 219 (440)
|.++.|+||+|+||||++++++..+...+..++++.. +.. ....++.++|+....+.+ ...++++..+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~---~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPV---SSDTDIFELIEE--EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEe---CChHHHHHHHHh--hC
Confidence 7899999999999999999999999888888888843 221 122356677766555322 344555555554 45
Q ss_pred CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
+.+++|+||.++.+.. +.+..|.+.++..+++||++....+-.+..|+.+ ..+
T Consensus 77 ~~~dvviIDEaq~l~~---------------------~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~------~~L 129 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK---------------------EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGS------PYL 129 (190)
T ss_pred CCCCEEEEEccccCCH---------------------HHHHHHHHHHHHcCCeEEEEecCcccccCcCchH------HHH
Confidence 6789999999965421 1123456666788999999988876444333221 233
Q ss_pred eeeceEEEEEee
Q 013567 300 KFFASVRLEIRS 311 (440)
Q Consensus 300 ~~~a~~rl~l~r 311 (440)
...++....++.
T Consensus 130 ~~~aD~V~~l~~ 141 (190)
T PRK04296 130 LALADKVTELKA 141 (190)
T ss_pred HHhcCeEEEeeE
Confidence 445666665554
No 255
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=5.6e-09 Score=101.18 Aligned_cols=69 Identities=22% Similarity=0.382 Sum_probs=50.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--c---CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--L---GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~---~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
=|++|++++|+|+|||||||| ++++++... + ..|.++++++.... . .+.+.+++.+++..++...++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 104 (252)
T PRK14256 26 DFPENSVTAIIGPSGCGKSTV-LRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYD 104 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHH
Confidence 368999999999999999999 999999875 3 46889998875432 1 23455777777655554444433
No 256
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.94 E-value=6.4e-09 Score=101.86 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=50.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-|++|++++|.|+|||||||| ++++.+...+ ..|.++++++.... . .+.+.+++.+++..++.. ++.+
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~e 118 (267)
T PRK14235 41 DIPEKTVTAFIGPSGCGKSTF-LRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYE 118 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHH
Confidence 478999999999999999999 9999999864 68899999875432 1 234557777766544432 4444
Q ss_pred H
Q 013567 209 A 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 119 n 119 (267)
T PRK14235 119 N 119 (267)
T ss_pred H
Confidence 3
No 257
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.94 E-value=6.4e-09 Score=100.80 Aligned_cols=69 Identities=16% Similarity=0.324 Sum_probs=50.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|+||+||||| ++++.++.. +..|.++++++.... . .+.+.+++.+++..++. .++.+
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 105 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTF-LRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFE 105 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHH
Confidence 478999999999999999999 999999864 467889998865422 1 23456787777655444 35444
Q ss_pred H
Q 013567 209 A 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 106 n 106 (253)
T PRK14242 106 N 106 (253)
T ss_pred H
Confidence 3
No 258
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.93 E-value=4.4e-09 Score=111.69 Aligned_cols=153 Identities=12% Similarity=0.126 Sum_probs=92.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHHHH---
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMALE--- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~l~--- 211 (440)
-+++|++++|.|||||||||| +++++++.++..|.++++++..... .+.+.+++.+++..+....++.+.+.
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 98 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTL-LKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGR 98 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccc
Confidence 478999999999999999999 9999999999999999988753211 12345677666543333333332221
Q ss_pred ---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567 212 ---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S 256 (440)
Q Consensus 212 ---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~ 256 (440)
.+..++...+ ++...... ..++++ |++|+...++++ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~ 170 (491)
T PRK10982 99 YPTKGMFVDQDKMYRDTKAIFDELD-----IDIDPRAK-VATLSV--SQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170 (491)
T ss_pred ccccccccCHHHHHHHHHHHHHHcC-----CCCCccCc-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 1222222111 12111111 234444 777777777766 2
Q ss_pred HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
+.+..+...+++.+.|||+++|..+.+...++.......|+...
T Consensus 171 ~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 171 NHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence 23333333334568999999999887665555555555665543
No 259
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.93 E-value=4.5e-09 Score=112.15 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=91.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h--hhhhhcccccceeecCCCCHHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S--YSKALGVDVENLIVCQPDNGEMAL---- 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~--~a~~lGv~~~~l~i~~~~~~ee~l---- 210 (440)
-+++|++++|.|||||||||| +++++++..+..|.++++++..... . +.+.+++.+++..++...++.+.+
T Consensus 27 ~i~~Ge~~~liG~nGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 105 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTL-MKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGR 105 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcc
Confidence 478999999999999999999 9999999999999999988654321 1 223477766654433333332222
Q ss_pred ------------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567 211 ------------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 211 ------------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
..+..++...+ ++...... ..++++ |++|+...++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~-~~~LSg--G~~qrv~ia~al~~~p~lllLDEPt~~LD 177 (510)
T PRK09700 106 HLTKKVCGVNIIDWREMRVRAAMMLLRVG-----LKVDLDEK-VANLSI--SHKQMLEIAKTLMLDAKVIIMDEPTSSLT 177 (510)
T ss_pred ccccccccccccCHHHHHHHHHHHHHHcC-----CCCCcccc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 11222222111 11111111 134444 777777777766
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
...+..+...+++.+.|||+++|..+.+...++.......|+..
T Consensus 178 ~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 178 NKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 22333333333445899999999987766555555555555543
No 260
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.93 E-value=6.2e-09 Score=94.72 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=71.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeec-------------CCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVC-------------QPDN 205 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~-------------~~~~ 205 (440)
-+++|++++|.|+||+||||| ++++.+...+..|.+++++. +.+++.+++..+. ...+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~~~--------~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS 93 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSL-FRALAGLWPWGSGRIGMPEG--------EDLLFLPQRPYLPLGTLREQLIYPWDDVLS 93 (166)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCC--------ceEEEECCCCccccccHHHHhhccCCCCCC
Confidence 478999999999999999999 99999999888888888653 2233333322211 1112
Q ss_pred H--HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 206 G--EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 206 ~--ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
. .+.+..++.++ .+++++++|....-.... ..+.+.+.+ ++.+.|+|+++|..+
T Consensus 94 ~G~~~rv~laral~--~~p~~lllDEPt~~LD~~-------------~~~~l~~~l-------~~~~~tiiivsh~~~ 149 (166)
T cd03223 94 GGEQQRLAFARLLL--HKPKFVFLDEATSALDEE-------------SEDRLYQLL-------KELGITVISVGHRPS 149 (166)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEECCccccCHH-------------HHHHHHHHH-------HHhCCEEEEEeCChh
Confidence 1 12233445444 367899999877655310 011222333 233689999999865
No 261
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.92 E-value=5.8e-09 Score=111.31 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=85.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h--hhhhhhcccccce---eecCCCCHHHHHH-
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P--SYSKALGVDVENL---IVCQPDNGEMALE- 211 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~--~~a~~lGv~~~~l---~i~~~~~~ee~l~- 211 (440)
+++|++++|.|||||||||| ++++++..++..|.++++++.... . .+.+.+|+.+++. .+....++.+.+.
T Consensus 286 i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTEL-MNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI 364 (510)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence 78999999999999999999 999999999999999998865322 1 1234567766642 2222223322211
Q ss_pred -----------------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH------------
Q 013567 212 -----------------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM------------ 255 (440)
Q Consensus 212 -----------------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l------------ 255 (440)
.+.+++.. +-+. ...... ..++++ |++|+...++++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~~-~~~LSg--Gq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 365 SRSLKDGGYKGAMGLFHEVDEQRTAENQREL-----LALKCHSVNQN-ITELSG--GNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred ccccccccccccccccChHHHHHHHHHHHHh-----cCCCCCCccCc-cccCCh--HHHHHHHHHHHHhcCCCEEEECCC
Confidence 12222221 1121 111111 245555 888888888877
Q ss_pred --------HHHHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567 256 --------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYY 287 (440)
Q Consensus 256 --------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~ 287 (440)
.+.+.++...+++.+.|||+++|..+.+...+
T Consensus 437 t~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~ 476 (510)
T PRK09700 437 TRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVC 476 (510)
T ss_pred CCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhC
Confidence 23333333333356999999999987655433
No 262
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.92 E-value=5.8e-09 Score=97.72 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=80.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMAL-- 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l-- 210 (440)
-+.+|++++|.|+||+||||| ++++++.. .+..|.++++++..... .+ ...+++.+++..+....+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStL-l~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~ 100 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTL-AKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100 (200)
T ss_pred EECCCcEEEEECCCCCCHHHH-HHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence 467999999999999999999 99999984 57888999998754321 12 23367766654444333333322
Q ss_pred -------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Q 013567 211 -------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLN 277 (440)
Q Consensus 211 -------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~in 277 (440)
..++.++ .+++++++|....-.... -.+.+.+. |..+ ++.+.|||+++
T Consensus 101 ~~~~LS~G~~qrv~laral~--~~p~illlDEPt~~LD~~-------------~~~~l~~~---L~~~-~~~~~tiii~s 161 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLL--LEPDLAILDEPDSGLDID-------------ALRLVAEV---INKL-REEGKSVLIIT 161 (200)
T ss_pred ccccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccCCHH-------------HHHHHHHH---HHHH-HHCCCEEEEEe
Confidence 2333333 368899999877655310 01122233 3333 34589999999
Q ss_pred ccccccc
Q 013567 278 QIRYKIG 284 (440)
Q Consensus 278 hl~~~ig 284 (440)
|..+.+.
T Consensus 162 h~~~~~~ 168 (200)
T cd03217 162 HYQRLLD 168 (200)
T ss_pred cCHHHHH
Confidence 9876543
No 263
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.92 E-value=8.9e-09 Score=100.17 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=39.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
-+.+|++++|.|+||+||||| ++++++...+..|.++++++.
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~ 69 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTL-LNALSARLAPDAGEVHYRMRD 69 (258)
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCcc
Confidence 378999999999999999999 999999999999999999875
No 264
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.92 E-value=6.3e-09 Score=110.44 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=89.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee--c-C-----CCCHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV--C-Q-----PDNGE 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i--~-~-----~~~~e 207 (440)
-+++|++++|.|||||||||| ++++++...+..|.+++++..... ..+.+.+|+.+++..+ . . ..++.
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTL-l~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 103 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSAL-ARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTA 103 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHH
Confidence 478999999999999999999 999999999988999887754322 1233457776654321 1 0 12222
Q ss_pred HHH-------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HHH
Q 013567 208 MAL-------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QAL 259 (440)
Q Consensus 208 e~l-------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~l 259 (440)
+.+ ..+..++.. +-++...... ..++++ |++|+...++++ . .+.
T Consensus 104 ~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 175 (490)
T PRK10938 104 EIIQDEVKDPARCEQLAQQ-----FGITALLDRR-FKYLST--GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLA 175 (490)
T ss_pred HhcccchhHHHHHHHHHHH-----cCCHhhhhCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 221 122222221 1122221222 234444 666666666665 2 233
Q ss_pred HHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 260 RKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 260 ~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
..|..+ ++.+.|||+++|..+.+...++.......|+...
T Consensus 176 ~~l~~~-~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 176 ELLASL-HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred HHHHHH-HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 333333 3458999999999877665555555555565543
No 265
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.91 E-value=5.8e-09 Score=100.04 Aligned_cols=62 Identities=26% Similarity=0.368 Sum_probs=48.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~ 201 (440)
-+++|++++|.|+||+||||| ++++++...+..|.++++++.... . .+.+.+++.+++..++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTL-TKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLF 88 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhc
Confidence 468999999999999999999 999999999999999998864321 1 2345577777665443
No 266
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.91 E-value=8.9e-09 Score=100.02 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=45.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEEcCCCCCChh-hhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLVDAEHAFDPS-YSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~id~E~~~~~~-~a~~lGv~~~~l 198 (440)
=+++|++++|.|+||+||||| ++++.+...+ ..|.+++++....... +.+.+++.+++.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~ 88 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLT-CAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCC
Confidence 467999999999999999999 9999999887 7888999876542222 224567766654
No 267
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.90 E-value=6.2e-09 Score=102.23 Aligned_cols=43 Identities=26% Similarity=0.469 Sum_probs=39.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
-+++|++++|.||||+||||| ++++.+...+..|.++++++..
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i 71 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTL-FKALMGFVRLASGKISILGQPT 71 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEEh
Confidence 477999999999999999999 9999999999999999988653
No 268
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=1.2e-08 Score=98.81 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=50.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|+||+||||| ++++++...+ ..|.++++++.... . .+.+.+++.+++..++. .++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 103 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTF-LRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYD 103 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHH
Confidence 478999999999999999999 9999998764 57889998875432 1 23456788777655543 44443
Q ss_pred H
Q 013567 209 A 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 104 n 104 (251)
T PRK14270 104 N 104 (251)
T ss_pred H
Confidence 3
No 269
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.90 E-value=8.5e-09 Score=100.48 Aligned_cols=62 Identities=19% Similarity=0.390 Sum_probs=47.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC-----hhhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~ 201 (440)
-|++|++++|.||||+||||| ++++++... +..|.++++++.... ..+.+.+++.+++..++
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTL-LRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 578999999999999999999 999999876 367889998865421 12345677777665443
No 270
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.90 E-value=6.5e-09 Score=98.50 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=47.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~ 201 (440)
=+++|++++|.||||+||||| ++++.+...+..|.++++++.... . .+.+.+++.+++..++
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTL-LKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLF 90 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccc
Confidence 368999999999999999999 999999998899999998864321 1 1334567766654433
No 271
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.89 E-value=7.5e-09 Score=110.24 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=93.9
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h--hhhhhhcccccceeecCCCCHHHHHH--
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P--SYSKALGVDVENLIVCQPDNGEMALE-- 211 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~--~~a~~lGv~~~~l~i~~~~~~ee~l~-- 211 (440)
=-+++|++++|.||||+||||| ++++.+...+..|.+++++..... . .+.+.+|+.+++..++...++.+.+.
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTL-LKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLG 103 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhc
Confidence 3678999999999999999999 999999999999999998764321 1 13345777666544433333322221
Q ss_pred ----------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------
Q 013567 212 ----------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------------- 255 (440)
Q Consensus 212 ----------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------------- 255 (440)
.+..++...+ ++...... ..++++ |++|+...++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 104 QLPHKGGIVNRRLLNYEAREQLEHLG-----VDIDPDTP-LKYLSI--GQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHcC-----CCCCcCCc-hhhCCH--HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 1222222111 22111111 244554 777777777776
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
.+.+.++....++.+.|||+++|..+.+...++.......|....
T Consensus 176 ~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 176 IEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 223333333334568999999999876655555555555665543
No 272
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.89 E-value=6.4e-09 Score=100.15 Aligned_cols=131 Identities=18% Similarity=0.271 Sum_probs=86.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc---ceee-------------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE---NLIV------------- 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~---~l~i------------- 200 (440)
-||+|+++++.|+||+||||+ ++++.+...+.+|.+-+.+..+++.. +.+++++.+. .++.
T Consensus 46 ~IP~G~ivgflGaNGAGKSTt-LKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~ 124 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTT-LKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKL 124 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhh-HHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHH
Confidence 689999999999999999999 99999999999999999999888753 5555554331 1111
Q ss_pred -cCCC--C----HH---HHH---------------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHH
Q 013567 201 -CQPD--N----GE---MAL---------------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG 249 (440)
Q Consensus 201 -~~~~--~----~e---e~l---------------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~ 249 (440)
++.. . .+ +++ +.+..+ -+.++++++|..+-=.. ..
T Consensus 125 Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaL--Lh~p~VLfLDEpTvgLD------------V~ 190 (325)
T COG4586 125 IYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAAL--LHPPKVLFLDEPTVGLD------------VN 190 (325)
T ss_pred HHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHh--cCCCcEEEecCCccCcc------------hh
Confidence 1000 0 00 111 011111 24678888887653321 00
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
.| ..+.+-|+....++++||++++|..+++...|.
T Consensus 191 aq----~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~ 225 (325)
T COG4586 191 AQ----ANIREFLKEYNEERQATVLLTTHIFDDIATLCD 225 (325)
T ss_pred HH----HHHHHHHHHHHHhhCceEEEEecchhhHHHhhh
Confidence 11 233444577788999999999999988766444
No 273
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.4e-08 Score=98.89 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=47.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--c---CCcEEEEcCCCCCC----h-hhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--L---GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~---~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~ 202 (440)
=+++|++++|.|+||+||||| ++++++... + ..|.++++++.... . .+.+.+++.+++..++.
T Consensus 34 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (259)
T PRK14274 34 SIPENEVTAIIGPSGCGKSTF-IKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP 106 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc
Confidence 378999999999999999999 999999876 3 47888998875421 1 23456787777655443
No 274
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.89 E-value=7e-09 Score=99.54 Aligned_cols=60 Identities=18% Similarity=0.359 Sum_probs=46.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhccccccee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLI 199 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~ 199 (440)
=+++|++++|.|+|||||||| ++++.+...+..|.++++++.... . .+.+.+++.+++..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 87 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTV-VSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPV 87 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHH-HHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchh
Confidence 368999999999999999999 999999999999999998864321 1 23345666665543
No 275
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.1e-08 Score=98.92 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=49.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~e 207 (440)
-|++|++++|.|+|||||||| ++++.++..+ ..|.++++++.... . .+.+.+++.+++..++. .++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~ 101 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTF-LRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIY 101 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHH
Confidence 477999999999999999999 9999998652 47889999875432 1 23445777777654443 3443
No 276
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.3e-08 Score=99.08 Aligned_cols=70 Identities=16% Similarity=0.339 Sum_probs=51.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|||||||||| ++++++...+ ..|.+++++..... . .+.+.+++.+++..++...++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 104 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTV-LRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRD 104 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHH
Confidence 478999999999999999999 9999999864 58889998865321 1 23456777777655544444444
Q ss_pred H
Q 013567 209 A 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 105 n 105 (258)
T PRK14241 105 N 105 (258)
T ss_pred H
Confidence 3
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=7.8e-09 Score=110.22 Aligned_cols=153 Identities=15% Similarity=0.189 Sum_probs=92.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHHHH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMALE- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~l~- 211 (440)
-+.+|++++|.|||||||||| ++++++...+ ..|.+++++...... .+.+.+|+.+++..++...++.+.+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 105 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTL-MKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFL 105 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhh
Confidence 478999999999999999999 9999999885 689999988654321 12345777776654443334333221
Q ss_pred -----------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-------------------
Q 013567 212 -----------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------- 255 (440)
Q Consensus 212 -----------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------- 255 (440)
.+..++.. +-++...... ..++++ |++|+...++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~~LD~~ 177 (506)
T PRK13549 106 GNEITPGGIMDYDAMYLRAQKLLAQ-----LKLDINPATP-VGNLGL--GQQQLVEIAKALNKQARLLILDEPTASLTES 177 (506)
T ss_pred cccccccCCcCHHHHHHHHHHHHHH-----cCCCCCcccc-hhhCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 12222221 1122211111 244554 777777777766
Q ss_pred -HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 256 -SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 256 -~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
...+..+...+++.+.|||+++|..+.+...++.......|+...
T Consensus 178 ~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 178 ETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 223333333334568999999999876655555555555565543
No 278
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.88 E-value=1.4e-08 Score=98.31 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
=+++|++++|.|+||+||||| ++++.+...+..|.++++++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~ 66 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTL-LGCLAGRLAPDHGTATYIMRS 66 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEEeccc
Confidence 478999999999999999999 999999999999999998764
No 279
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=9.8e-09 Score=98.19 Aligned_cols=62 Identities=26% Similarity=0.550 Sum_probs=48.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~ 201 (440)
-+++|++++|.||||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTL-VNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLF 88 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeec
Confidence 478999999999999999999 999999999999999998865322 12345577777665443
No 280
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.2e-08 Score=98.81 Aligned_cols=68 Identities=25% Similarity=0.397 Sum_probs=50.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-----GNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-----~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-|.+|++++|.||||+||||| ++++++...+. .|.++++++.... . .+.+.+++.+++..++.. ++.+
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~e 103 (251)
T PRK14249 26 DFPERQITAIIGPSGCGKSTL-LRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFD 103 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHH
Confidence 367999999999999999999 99999998775 5889998875432 1 234567887777655432 4443
No 281
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.88 E-value=4.1e-09 Score=106.26 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=92.4
Q ss_pred EEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH-------h-
Q 013567 148 IFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC-------R- 218 (440)
Q Consensus 148 I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~-------~- 218 (440)
|.|||||||||| +++++++.++..|.++++++..... ...+.+++.+++..++...++.+.+....... .
T Consensus 1 l~G~nGsGKSTL-l~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTL-LRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHH-HHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 579999999999 9999999999999999998754322 23456888887766665556555433211000 0
Q ss_pred --cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhcCCEEEE
Q 013567 219 --SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKAGCTLIF 275 (440)
Q Consensus 219 --~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~~~tVI~ 275 (440)
..-.+.+-++.+..-. ..++++ |++|+...+|++ ..+...|..+.++.+.|||+
T Consensus 80 ~~~~~l~~~~l~~~~~~~-~~~LSg--Gq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRK-PHQLSG--GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHcCCcchhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0001122223222222 245554 788888888876 23334445555667999999
Q ss_pred EeccccccccccCCceeecccceee
Q 013567 276 LNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 276 inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
++|..+.+..+++.......|+...
T Consensus 157 vTHd~~e~~~~~d~i~vl~~G~i~~ 181 (325)
T TIGR01187 157 VTHDQEEAMTMSDRIAIMRKGKIAQ 181 (325)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999876655555445555555543
No 282
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.87 E-value=1.1e-08 Score=109.04 Aligned_cols=141 Identities=15% Similarity=0.216 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h--hhhhhhccccccee---ecCCCCHHHHHH-
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P--SYSKALGVDVENLI---VCQPDNGEMALE- 211 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~--~~a~~lGv~~~~l~---i~~~~~~ee~l~- 211 (440)
+++|++++|.|||||||||| ++++.+..++..|.++++++.... . ...+.+++.+++.. ++...++.+.+.
T Consensus 276 i~~Ge~~~iiG~NGsGKSTL-lk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSEL-MKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHH-HHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 68999999999999999999 999999998899999998764321 1 12234666665431 232333322211
Q ss_pred --------------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH---------------
Q 013567 212 --------------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM--------------- 255 (440)
Q Consensus 212 --------------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l--------------- 255 (440)
.+.+++. .+-++ ....-. ...+++ |++|+...++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--Gq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 355 SARRHHLRAGCLINNRWEAENADRFIR-----SLNIKTPSREQL-IMNLSG--GNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred ccchhhcccccccChHHHHHHHHHHHH-----hcCcccCCccCc-cccCCH--HHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 1122222 12221 111111 245555 788888888876
Q ss_pred -----HHHHHHHHHHHHhcCCEEEEEeccccccccccCC
Q 013567 256 -----SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGN 289 (440)
Q Consensus 256 -----~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~ 289 (440)
.+.+.++...+++.+.|||+++|..+.+...++.
T Consensus 427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCE
Confidence 2344444444456699999999998876554443
No 283
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=1.4e-08 Score=99.24 Aligned_cols=62 Identities=18% Similarity=0.332 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~ 201 (440)
-+++|++++|.|+||+||||| ++++.+...+ ..|.++++++.... . .+.+.+++.+++..++
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 101 (261)
T PRK14263 30 PIRKNEITGFIGPSGCGKSTV-LRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF 101 (261)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc
Confidence 478999999999999999999 9999999865 57889999876432 1 2345577777665444
No 284
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=9.1e-09 Score=98.54 Aligned_cols=62 Identities=27% Similarity=0.537 Sum_probs=48.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~ 201 (440)
-+++|++++|.||||+||||| ++++.+...+..|.++++++.... . .+.+.+++.+++..++
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTI-LRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF 87 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhh
Confidence 478999999999999999999 999999999999999998865432 1 2344577776665443
No 285
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.87 E-value=5.6e-09 Score=98.93 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=82.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
=+++|++++|.||||+||||| ++++++...+..|.++++++..... .+.+.+++.+++..++ +.++.+.+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~ 100 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSL-LLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENIT 100 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHh
Confidence 467999999999999999999 9999999999999999988753221 1234567766665444 233333222
Q ss_pred H--------HHHHHhcCCcceEEEec-------ccccCCchhhcccchhhhHHHHHHHH--------------------H
Q 013567 212 I--------ADRMCRSGAIDLICVDS-------VSALTPRAEIEGEIGMQQIGLQARLM--------------------S 256 (440)
Q Consensus 212 ~--------i~~l~~~~~~~lvVIDs-------l~~l~~~~el~~~~g~~q~~~~ar~l--------------------~ 256 (440)
. ........++.- .++. ..... ...+++ |++++...++++ .
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~-~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 176 (218)
T cd03290 101 FGSPFNKQRYKAVTDACSLQP-DIDLLPFGDQTEIGER-GINLSG--GQRQRICVARALYQNTNIVFLDDPFSALDIHLS 176 (218)
T ss_pred hcCcCCHHHHHHHHHHhCcHH-HHHhCcCccccCcccC-CCcCCH--HHHHHHHHHHHHhhCCCEEEEeCCccccCHHHH
Confidence 1 011111101000 0000 00001 133443 777777777776 2
Q ss_pred HHHHH--HHHHHHhcCCEEEEEecccccc
Q 013567 257 QALRK--MSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 257 ~~l~~--L~~lak~~~~tVI~inhl~~~i 283 (440)
..+.+ +...+++.+.|||+++|..+.+
T Consensus 177 ~~l~~~~ll~~~~~~~~tii~~sH~~~~~ 205 (218)
T cd03290 177 DHLMQEGILKFLQDDKRTLVLVTHKLQYL 205 (218)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCChHHH
Confidence 23333 4555666789999999997654
No 286
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=2.1e-08 Score=90.02 Aligned_cols=119 Identities=24% Similarity=0.309 Sum_probs=78.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCH-H-HHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNG-E-MALEIA 213 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~-e-e~l~~i 213 (440)
-+++|+++.|.|+||+||||| ++++.+...+..+.++++++..... .+.+.+++.++ .+. + +.+.++
T Consensus 21 ~i~~g~~~~i~G~nGsGKStl-l~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------lS~G~~~r~~l~ 92 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTL-LRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQRQRVALA 92 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-------CCHHHHHHHHHH
Confidence 367999999999999999999 9999999988999999998754331 12333444443 332 2 233445
Q ss_pred HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 214 DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 214 ~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
..+.. .++++++|....-.... . ...+.+. +..+.. .+.|+|+++|..+.+.
T Consensus 93 ~~l~~--~~~i~ilDEp~~~lD~~------------~-~~~l~~~---l~~~~~-~~~tii~~sh~~~~~~ 144 (157)
T cd00267 93 RALLL--NPDLLLLDEPTSGLDPA------------S-RERLLEL---LRELAE-EGRTVIIVTHDPELAE 144 (157)
T ss_pred HHHhc--CCCEEEEeCCCcCCCHH------------H-HHHHHHH---HHHHHH-CCCEEEEEeCCHHHHH
Confidence 55543 57899999887655311 0 1112222 333333 3789999999987554
No 287
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=1.5e-08 Score=97.95 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=50.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+.+|++++|+|+||+||||| ++++++... +..|.++++++..... .+.+.+++.+++..++. .++.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~e 97 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTF-LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYE 97 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHH
Confidence 367999999999999999999 999999874 5788899988754322 23456777777655443 34433
No 288
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=1.5e-08 Score=99.25 Aligned_cols=63 Identities=17% Similarity=0.366 Sum_probs=47.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~ 202 (440)
-+++|++++|.|+||+||||| ++++++... +..|.++++++.... . .+.+.+++.+++..++.
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTF-LRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP 115 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc
Confidence 467999999999999999999 999999764 467889998765422 1 23456777777654443
No 289
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.86 E-value=1.8e-08 Score=95.78 Aligned_cols=136 Identities=23% Similarity=0.228 Sum_probs=80.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC---CC---Ch-h----hhhhhcccccceeecCCCCHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH---AF---DP-S----YSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~---~~---~~-~----~a~~lGv~~~~l~i~~~~~~e 207 (440)
=|++|++++|.|+||+||||| ++++.+...+..|.+++++.. .. .. . +.+.+++.+++..+....++.
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 108 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTL-LKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSAL 108 (224)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHH
Confidence 467999999999999999999 999999999888999997421 11 11 1 123577777766555444444
Q ss_pred HHHHH---------------HHHHHhcCCcceEEEec-ccccCCchhhcccchhhhHHHHHHHH----------------
Q 013567 208 MALEI---------------ADRMCRSGAIDLICVDS-VSALTPRAEIEGEIGMQQIGLQARLM---------------- 255 (440)
Q Consensus 208 e~l~~---------------i~~l~~~~~~~lvVIDs-l~~l~~~~el~~~~g~~q~~~~ar~l---------------- 255 (440)
+.+.. +..+++. +-++. +.... ..++++ |++|+...++++
T Consensus 109 e~l~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~~-~~~LS~--G~~qrl~laral~~~p~llllDEPt~~L 180 (224)
T TIGR02324 109 EVVAEPLLERGVPREAARARARELLAR-----LNIPERLWHLP-PATFSG--GEQQRVNIARGFIADYPILLLDEPTASL 180 (224)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH-----cCCchhhhhCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 33221 1111111 11111 11111 233443 677777777765
Q ss_pred ----HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 256 ----SQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 256 ----~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
...+..+....++.++|||+++|..+.+
T Consensus 181 D~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 181 DAANRQVVVELIAEAKARGAALIGIFHDEEVR 212 (224)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2233333333345589999999997644
No 290
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.86 E-value=1.4e-08 Score=99.78 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=43.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--------CcEEEEcCCCCCC--h-hhhhhhcccccc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG--------GNAMLVDAEHAFD--P-SYSKALGVDVEN 197 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~--------~~vv~id~E~~~~--~-~~a~~lGv~~~~ 197 (440)
-|.+|++++|.||||+||||| ++++++...+. .|.++++++.... . .+.+.+++.+++
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTL-l~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~ 91 (272)
T PRK13547 23 RIEPGRVTALLGRNGAGKSTL-LKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA 91 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEeccc
Confidence 477999999999999999999 99999998876 7889998865322 1 233345555443
No 291
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=2.2e-08 Score=96.86 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=48.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hc--CCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ---KL--GGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~---~~--~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
=+++|++++|.|+|||||||| +++++++. .+ ..|.+++++..... ..+.+.+++.+++..++. .++.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ 102 (250)
T PRK14245 25 EIEEKSVVAFIGPSGCGKSTF-LRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFE 102 (250)
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHH
Confidence 377999999999999999999 99998863 33 37889998875432 123456787777655443 34433
No 292
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.86 E-value=1.4e-08 Score=108.11 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=90.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h--hhhhhhcccccce---eecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P--SYSKALGVDVENL---IVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~--~~a~~lGv~~~~l---~i~~~~~~ee~l~ 211 (440)
-+++|++++|.|||||||||| ++++.+..++..|.++++++.... . .+.+.+|+.+++. .+....++.+.+.
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTL-l~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 352 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTEL-MKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS 352 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhh
Confidence 478999999999999999999 999999999999999998864321 1 1234577777663 2333334433222
Q ss_pred H---------------------HHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567 212 I---------------------ADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-------------- 255 (440)
Q Consensus 212 ~---------------------i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-------------- 255 (440)
. +++++. .+-++ ....-. ..++++ |++|+...++++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--Gekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 353 LTALRYFSRAGGSLKHADEQQAVSDFIR-----LFNIKTPSMEQA-IGLLSG--GNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred hhhhhhhcccccccCHHHHHHHHHHHHH-----hcCCCCCCccCc-hhhCCH--HHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 1 112211 12221 111111 245555 788888888876
Q ss_pred ------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccc
Q 013567 256 ------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGG 296 (440)
Q Consensus 256 ------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG 296 (440)
.+.+..+.....+.|.|||+++|..+.+...++.......|
T Consensus 425 ~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 425 GVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred CCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 23333333333445899999999987665444333333333
No 293
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.86 E-value=1.3e-08 Score=98.98 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=36.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-|++|++++|.||||+||||| ++++++...+..|.++++.
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTL-l~~i~Gl~~p~~G~i~~~~ 65 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTL-VRVVLGLVAPDEGVIKRNG 65 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECC
Confidence 478999999999999999999 9999999988888887764
No 294
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=1.7e-08 Score=97.92 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=49.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
=|++|++++|.|+||+||||| ++++++...+ ..|.++++++.... . .+.+.+++.+++..++. .++.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 106 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTF-LRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYD 106 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHH
Confidence 478999999999999999999 9999999875 37889998865321 1 23455777776654442 44443
No 295
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.85 E-value=1.4e-08 Score=108.20 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=93.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChh----hhhhhcccccceeecCCCCHHHHHH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPS----YSKALGVDVENLIVCQPDNGEMALE- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~----~a~~lGv~~~~l~i~~~~~~ee~l~- 211 (440)
-+++|++++|.|||||||||| ++++++...+ ..|.++++++...... +.+.+|+.+++..++...++.+.+.
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTL-l~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 101 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTL-MKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFL 101 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHh
Confidence 578999999999999999999 9999999875 5888999876543211 2345777776654444334433222
Q ss_pred ------------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567 212 ------------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 212 ------------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------ 255 (440)
.+..++...+ ++....-.+..++++ |++|+...++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~~~~~LSg--G~~qrv~iA~al~~~p~lllLDEPt~~LD~ 174 (500)
T TIGR02633 102 GNEITLPGGRMAYNAMYLRAKNLLRELQ-----LDADNVTRPVGDYGG--GQQQLVEIAKALNKQARLLILDEPSSSLTE 174 (500)
T ss_pred hccccccccccCHHHHHHHHHHHHHHcC-----CCCCcccCchhhCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 1222222111 211110011245555 788888888876
Q ss_pred --HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 256 --SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 256 --~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
...+..+...+++.+.|||+++|..+.+...++.......|+..
T Consensus 175 ~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 175 KETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence 23333333333456999999999988766555555555555544
No 296
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.8e-08 Score=107.55 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=86.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCC--h--hhhhhhcccccce---eecCCCCHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFD--P--SYSKALGVDVENL---IVCQPDNGEMAL 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~--~--~~a~~lGv~~~~l---~i~~~~~~ee~l 210 (440)
-+++|++++|.|+|||||||| ++++.++.+ +..|.++++++.... . .+.+.+++.+++. .+....++.+.+
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTEL-VQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHH-HHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 478999999999999999999 999999988 478999998764321 1 1234467766653 123333333322
Q ss_pred H--------------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567 211 E--------------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-------------- 255 (440)
Q Consensus 211 ~--------------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-------------- 255 (440)
. .+..++. .+-++ ...... ..++++ |++|+...++++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--G~kqrv~lA~al~~~p~lllLDEPt~ 434 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQ-----RLKVKTASPELA-IARLSG--GNQQKAVLAKCLLLNPKILILDEPTR 434 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHH-----hcCccCCCcccc-cccCCH--HHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 1 1112211 12222 111111 245555 888888888876
Q ss_pred ------HHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 256 ------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 256 ------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
.+.+..+...+++.+.|||+++|..+.+...++
T Consensus 435 ~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d 473 (506)
T PRK13549 435 GIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSD 473 (506)
T ss_pred CcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCC
Confidence 233344444344569999999999876654444
No 297
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.85 E-value=2.7e-08 Score=96.39 Aligned_cols=42 Identities=26% Similarity=0.521 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
-+++|++++|.|+|||||||| ++++++... ..|.++++++..
T Consensus 18 ~i~~Gei~~l~G~nGsGKSTL-l~~l~Gl~~-~~G~i~~~g~~i 59 (248)
T PRK03695 18 EVRAGEILHLVGPNGAGKSTL-LARMAGLLP-GSGSIQFAGQPL 59 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCCC-CCeEEEECCEec
Confidence 378999999999999999999 999999875 478899988753
No 298
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.85 E-value=2.6e-08 Score=89.81 Aligned_cols=136 Identities=15% Similarity=0.293 Sum_probs=87.1
Q ss_pred cCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h-hhhhhcccc--------
Q 013567 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S-YSKALGVDV-------- 195 (440)
Q Consensus 127 TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~-~a~~lGv~~-------- 195 (440)
++-+-||.+- =-+.+|+.+.|.||+||||||| +++++.+..++.|.++|.+|..... . +..++.+..
T Consensus 14 ~~a~il~~is-l~v~~Ge~iaitGPSG~GKStl-lk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNIS-LSVRAGEFIAITGPSGCGKSTL-LKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeeccee-eeecCCceEEEeCCCCccHHHH-HHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 4444455432 3578999999999999999999 9999999999999999999975433 2 333333322
Q ss_pred ---cceeec------CCC-------------------------C--HHHHHHHHHHHHhcCCcceEEEecccccCCchhh
Q 013567 196 ---ENLIVC------QPD-------------------------N--GEMALEIADRMCRSGAIDLICVDSVSALTPRAEI 239 (440)
Q Consensus 196 ---~~l~i~------~~~-------------------------~--~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el 239 (440)
+|+.+- +++ + ..+....++.+ ...++++.+|.++.....
T Consensus 92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L--q~~P~ILLLDE~TsALD~--- 166 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL--QFMPKILLLDEITSALDE--- 166 (223)
T ss_pred chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh--hcCCceEEecCchhhcCh---
Confidence 232210 000 0 01223344443 346788888988766531
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccc
Q 013567 240 EGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282 (440)
Q Consensus 240 ~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ 282 (440)
.-.+.+..++ .++.++.+++|+.|+|..+.
T Consensus 167 ----------~nkr~ie~mi---~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 167 ----------SNKRNIEEMI---HRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred ----------hhHHHHHHHH---HHHhhhhceEEEEEecChHH
Confidence 1123344444 44556889999999998764
No 299
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.85 E-value=7.1e-09 Score=124.15 Aligned_cols=157 Identities=12% Similarity=0.112 Sum_probs=98.2
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADR 215 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~ 215 (440)
=++++|++++|.|+||+||||| ++++.+...+..|.+++++...... ...+.+|+.++...+.+..++.+.+.....
T Consensus 1960 f~I~~GEi~gLLG~NGAGKTTL-lkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~ 2038 (2272)
T TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTT-FKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR 2038 (2272)
T ss_pred EEEcCCcEEEEECCCCCcHHHH-HHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHH
Confidence 4789999999999999999999 9999999999999999998765322 234568888877666666666665443211
Q ss_pred HHh-------c---CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHH
Q 013567 216 MCR-------S---GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGN 265 (440)
Q Consensus 216 l~~-------~---~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~l 265 (440)
+.. . .-.+.+-++...... ..++++ |++++...++++ ++.+..+...
T Consensus 2039 l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-~~~LSG--GqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257 2039 LRGVPAEEIEKVANWSIQSLGLSLYADRL-AGTYSG--GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHhcCC-hhhCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 100 0 000111111111111 133443 666666666655 3344444443
Q ss_pred HHhcCCEEEEEeccccccccccCCceeecccce
Q 013567 266 ASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA 298 (440)
Q Consensus 266 ak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~ 298 (440)
.++.|.|||+++|..+.+...|+.......|+.
T Consensus 2116 l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i 2148 (2272)
T TIGR01257 2116 IIREGRAVVLTSHSMEECEALCTRLAIMVKGAF 2148 (2272)
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 444589999999999877665655545545544
No 300
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.84 E-value=2.4e-08 Score=96.69 Aligned_cols=43 Identities=37% Similarity=0.522 Sum_probs=37.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCcEEEEcCCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEV--QKLGGNAMLVDAEHA 182 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~--~~~~~~vv~id~E~~ 182 (440)
-+++|++++|+|+||+||||| ++++++. ..+..|.+++++...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 29 SINKGEIHAIMGPNGSGKSTL-SKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCCcCcCCCceEEECCEEc
Confidence 478999999999999999999 8999997 357788899987643
No 301
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2e-08 Score=97.94 Aligned_cols=68 Identities=12% Similarity=0.220 Sum_probs=48.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CcEEEEcCCCCC----C-hhhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-----GNAMLVDAEHAF----D-PSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-----~~vv~id~E~~~----~-~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
=+++|++++|.|+||+||||| ++++.+...+. .|.++++++... . ..+.+.+++.+++..++. .++.+
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~e 106 (261)
T PRK14258 29 EIYQSKVTAIIGPSGCGKSTF-LKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYD 106 (261)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHH
Confidence 478999999999999999999 99999998764 577888876532 1 123445676666544443 44433
No 302
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2.4e-08 Score=96.67 Aligned_cols=69 Identities=12% Similarity=0.231 Sum_probs=49.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC---h--hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD---P--SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~---~--~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-|++|++++|.|+||+||||| ++++++... +..|.++++++.... . .+.+.+++.+++..++. .++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 103 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTF-LRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYD 103 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHH
Confidence 478999999999999999999 999999986 357889998875322 1 23445777766654443 34444
Q ss_pred H
Q 013567 209 A 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 104 n 104 (251)
T PRK14251 104 N 104 (251)
T ss_pred H
Confidence 3
No 303
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2e-08 Score=97.11 Aligned_cols=64 Identities=27% Similarity=0.447 Sum_probs=48.1
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCCh-----hhhhhhcccccceeecC
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFDP-----SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~~-----~~a~~lGv~~~~l~i~~ 202 (440)
=-+++|++++|.|+||+||||| +++++++..+ ..|.++++++..... .+.+.+++.+++..++.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTL-LRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP 97 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHH-HHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence 3578999999999999999999 9999998763 678899988654321 23456777776654443
No 304
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2.3e-08 Score=96.65 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=49.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC---h-hhhhhhcccccceeecCCCCHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD---P-SYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~---~-~~a~~lGv~~~~l~i~~~~~~e 207 (440)
-|.+|++++|.||||+||||| ++++.+...+ ..|.++++++.... . .+.+.+++.+++..++. .++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 100 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTL-LRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIY 100 (249)
T ss_pred EecCCCEEEEECCCCCCHHHH-HHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHH
Confidence 477999999999999999999 9999998875 47889998865421 1 23456777776655443 3443
No 305
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2e-08 Score=98.61 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=49.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|+||+||||| ++++++...+ ..|.+++++..... . .+.+.+++.+++..++.. ++.+
T Consensus 47 ~i~~Ge~~~I~G~nGsGKSTL-l~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e 124 (272)
T PRK14236 47 RIPKNRVTAFIGPSGCGKSTL-LRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYE 124 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHH
Confidence 478999999999999999999 9999998763 67889998865432 1 234567777766544433 4443
No 306
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.84 E-value=1.9e-08 Score=107.46 Aligned_cols=142 Identities=13% Similarity=0.190 Sum_probs=85.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--h--hhhhhcccccce---eecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--S--YSKALGVDVENL---IVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~--~a~~lGv~~~~l---~i~~~~~~ee~l~ 211 (440)
-+++|++++|.|||||||||| ++++.+..++..|.+++++...... . +.+.+++.+++. .++...++.+.+.
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTL-l~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTEL-AETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence 478999999999999999999 9999999988899999987643221 1 123466666542 1222223322211
Q ss_pred ------------------HHHHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567 212 ------------------IADRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 212 ------------------~i~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
.+..++. .+-++ ...... ..++++ |++|+...++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--G~kqrl~la~al~~~p~lLlLDEPt~gLD 435 (510)
T PRK15439 364 ALTHNRRGFWIKPARENAVLERYRR-----ALNIKFNHAEQA-ARTLSG--GNQQKVLIAKCLEASPQLLIVDEPTRGVD 435 (510)
T ss_pred hhhhhhhccccChHHHHHHHHHHHH-----HcCCCCCCccCc-cccCCc--HHHHHHHHHHHHhhCCCEEEECCCCcCcC
Confidence 1112221 11121 111111 244555 788888888876
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCC
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGN 289 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~ 289 (440)
.+.+..+...+++.+.|||+++|..+.+..+++.
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 436 VSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 2334444333344689999999998876654443
No 307
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.83 E-value=1.2e-08 Score=96.83 Aligned_cols=61 Identities=21% Similarity=0.372 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i 200 (440)
-+++|++++|.||||+||||| ++++++...+..|.++++++.... ..+.+.+++.+++..+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l 89 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSL-LLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVL 89 (221)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcc
Confidence 478999999999999999999 999999999999999998865322 1244567776665443
No 308
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.83 E-value=1e-08 Score=110.00 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=87.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h---hhhhhcccccce--eecCCCCHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S---YSKALGVDVENL--IVCQPDNGEMAL 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~---~a~~lGv~~~~l--~i~~~~~~ee~l 210 (440)
-+++|++++|.|||||||||| ++++.++.. ..|.++++++..... . +.+.+|+.+++. .+....++.+.+
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTL-lk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l 385 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTT-GLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence 478999999999999999999 999999884 788999988653221 1 234578777764 234444554433
Q ss_pred HHHHHHH---------hc---CCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567 211 EIADRMC---------RS---GAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM---------------------S 256 (440)
Q Consensus 211 ~~i~~l~---------~~---~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~ 256 (440)
....... .. .-++.+-++ ...... ..++++ |++|+...++++ .
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSg--G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 462 (529)
T PRK15134 386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY-PAEFSG--GQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462 (529)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC-CccCCH--HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHH
Confidence 2210000 00 001112222 111111 245555 888888888877 2
Q ss_pred HHHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYY 287 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~ 287 (440)
.++..|..++++.+.|||+++|..+.+...+
T Consensus 463 ~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~ 493 (529)
T PRK15134 463 QILALLKSLQQKHQLAYLFISHDLHVVRALC 493 (529)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHHHHHhc
Confidence 3444445555556999999999987654433
No 309
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=2.3e-08 Score=98.99 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=49.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-|.+|++++|.|+||+||||| ++++.++.. +..|.++++++.... . .+.+.+++.+++..++.. ++.+
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTL-l~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e 138 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTF-LRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFD 138 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHH
Confidence 578999999999999999999 999999754 378889998865321 1 234567777776554432 4433
No 310
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.83 E-value=2.5e-08 Score=96.24 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=38.6
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCC
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHA 182 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~ 182 (440)
--+++|++++|.|+||+||||| ++++.+.. .+..|.++++++..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~G~i~~~g~~~ 67 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTL-SATLAGREDYEVTGGTVEFKGKDL 67 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHH-HHHHcCCccCCCCceEEEECCCcc
Confidence 3578999999999999999999 99999984 57889999998754
No 311
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.83 E-value=1.4e-08 Score=96.94 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
-+++|++++|.|+||+||||| ++++++...+..|.++++++.
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~~p~~G~i~~~g~~ 85 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTL-LRLLAGIYPPDSGTVTVRGRV 85 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEE
Confidence 467999999999999999999 999999999999999998764
No 312
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.83 E-value=2.7e-08 Score=96.38 Aligned_cols=63 Identities=14% Similarity=0.258 Sum_probs=46.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC-----hhhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~ 202 (440)
-|.+|++++|.|+||+||||| ++++++... +..|.++++++.... ..+.+.+++.+++..++.
T Consensus 27 ~i~~Ge~~~I~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (251)
T PRK14244 27 DIYKREVTAFIGPSGCGKSTF-LRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP 99 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc
Confidence 477999999999999999999 999999875 357888998764321 123456777777654443
No 313
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.5e-08 Score=98.22 Aligned_cols=63 Identities=21% Similarity=0.437 Sum_probs=47.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----hhhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----PSYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~~~a~~lGv~~~~l~i~~ 202 (440)
-|++|++++|.|+||+||||| ++++.+...+ ..|.++++++.... ..+.+.+++.+++..++.
T Consensus 43 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~ 114 (276)
T PRK14271 43 GFPARAVTSLMGPTGSGKTTF-LRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP 114 (276)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence 468999999999999999999 9999998874 57889998865432 123456777776654443
No 314
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.82 E-value=2.7e-08 Score=93.48 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=47.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~ 201 (440)
-+++|++++|.|+||+||||| ++++.+...+..|.+++++..... . .+.+.+++.+++..+.
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTL-ILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLF 94 (207)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCccc
Confidence 468999999999999999999 999999999999999998864321 1 2344567766654433
No 315
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=98.82 E-value=1.3e-08 Score=100.45 Aligned_cols=192 Identities=18% Similarity=0.142 Sum_probs=121.1
Q ss_pred CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccc--------
Q 013567 128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDV-------- 195 (440)
Q Consensus 128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~-------- 195 (440)
-+|.|+++| +|..+|+++.+.||.|+|||||.......+..+|-..+|-+.|...... +.+-.|+..
T Consensus 259 RFpvLNk~L-kGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y~ 337 (514)
T KOG2373|consen 259 RFPVLNKYL-KGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSYK 337 (514)
T ss_pred hhhHHHHHh-ccCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhhh
Confidence 367999999 9999999999999999999999878888888888899999988764432 122223322
Q ss_pred ------ccee--e---cCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHH
Q 013567 196 ------ENLI--V---CQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG 264 (440)
Q Consensus 196 ------~~l~--i---~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~ 264 (440)
+++- + ......+..++.+...+--.++.-||||.++-|.....+.. ++ ...| ..++--+..
T Consensus 338 HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~---Dr-f~~Q----D~iig~fR~ 409 (514)
T KOG2373|consen 338 HWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMAL---DR-FHLQ----DRIIGYFRQ 409 (514)
T ss_pred HHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhcc---ch-hhhH----HHHHHHHHH
Confidence 1111 1 11122334444444433335678899999998875433332 11 1112 234445566
Q ss_pred HHHhcCCEEEEEeccccccccccCCceee---cccce-eeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCC
Q 013567 265 NASKAGCTLIFLNQIRYKIGVYYGNPEVT---SGGIA-LKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSR 339 (440)
Q Consensus 265 lak~~~~tVI~inhl~~~ig~~~~~~~~~---~gG~~-l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~ 339 (440)
+|.+++|-|-++-|.++.-+. .+.. .+|.+ ...-++..+.+.... -+...| +.++.|.|||+.-
T Consensus 410 fAT~nn~HvTlVvHPRKed~d----~El~t~s~fGsAkatQEADNVliiQdkr------l~~~rg-kkyLqi~KNRy~G 477 (514)
T KOG2373|consen 410 FATQNNIHVTLVVHPRKEDGD----TELDTQSFFGSAKATQEADNVLIIQDKR------LDRDRG-KKYLQILKNRYYG 477 (514)
T ss_pred HhhccceeEEEEecccccCCC----ceeeehhhccccccccccccEEEEeecc------cccccc-hhhhhhhhhcccC
Confidence 788999999999999875432 2221 23433 345566777765431 111223 4588999999754
No 316
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.82 E-value=3e-08 Score=97.13 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=49.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|+||+||||| ++++.+... +..|.+++++..... . .+.+.+++.+++..++. .++.+
T Consensus 42 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 119 (267)
T PRK14237 42 QFEKNKITALIGPSGSGKSTY-LRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYE 119 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHH
Confidence 478999999999999999999 999999875 468889998875422 1 23456787777654443 34433
No 317
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.82 E-value=1.8e-08 Score=107.29 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCC--h--hhhhhhcccccce---eecCCCCHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFD--P--SYSKALGVDVENL---IVCQPDNGEMALE 211 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~--~--~~a~~lGv~~~~l---~i~~~~~~ee~l~ 211 (440)
+.+|++++|.|||||||||| ++++++...+ ..|.++++++.... . .+.+.+|+.+++. .+++..++.+.+.
T Consensus 283 i~~Ge~~~l~G~NGsGKSTL-l~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~ 361 (500)
T TIGR02633 283 LRRGEILGVAGLVGAGRTEL-VQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361 (500)
T ss_pred EeCCcEEEEeCCCCCCHHHH-HHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence 78999999999999999999 9999999885 68889998765421 1 2344577766653 1222223322211
Q ss_pred --------------------HHHHHHhcCCcceEEEec-ccccCCchhhcccchhhhHHHHHHHH---------------
Q 013567 212 --------------------IADRMCRSGAIDLICVDS-VSALTPRAEIEGEIGMQQIGLQARLM--------------- 255 (440)
Q Consensus 212 --------------------~i~~l~~~~~~~lvVIDs-l~~l~~~~el~~~~g~~q~~~~ar~l--------------- 255 (440)
.+..++... -+.. ..... ...+++ |++|+...++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~l~~~~~~~~-~~~LSg--Gqkqrv~la~al~~~p~lllLDEPt~~ 433 (500)
T TIGR02633 362 LSVLKSFCFKMRIDAAAELQIIGSAIQRL-----KVKTASPFLP-IGRLSG--GNQQKAVLAKMLLTNPRVLILDEPTRG 433 (500)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHHhc-----CccCCCccCc-cccCCH--HHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 122222211 1211 11111 245554 788888888876
Q ss_pred -----HHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 256 -----SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 256 -----~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
.+.+..+...+++.+.|||+++|..+.+...++
T Consensus 434 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d 471 (500)
T TIGR02633 434 VDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSD 471 (500)
T ss_pred cCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 234444444444569999999999876654333
No 318
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.4e-08 Score=98.25 Aligned_cols=62 Identities=21% Similarity=0.437 Sum_probs=46.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC----h-hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~ 201 (440)
=+++|++++|.|+||+||||| ++++.++..+ ..|.++++++.... . .+.+.+++.+++..++
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~ 113 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTL-LRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF 113 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence 367999999999999999999 9999998752 46888898875432 1 2345677777765444
No 319
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.4e-08 Score=98.90 Aligned_cols=69 Identities=16% Similarity=0.360 Sum_probs=50.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
=|++|++++|.|+||+||||| +++++++.. +..|.++++++.... . .+.+.+++.+++..++.. ++.+
T Consensus 61 ~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~e 138 (285)
T PRK14254 61 DIPENQVTAMIGPSGCGKSTF-LRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYD 138 (285)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHH
Confidence 478999999999999999999 999999976 478899998875421 1 234567777776554433 5444
Q ss_pred H
Q 013567 209 A 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 139 n 139 (285)
T PRK14254 139 N 139 (285)
T ss_pred H
Confidence 3
No 320
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=4.9e-09 Score=99.94 Aligned_cols=60 Identities=27% Similarity=0.442 Sum_probs=47.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhccccccee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLI 199 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~ 199 (440)
=+++|+++.|.||||+||||| ++++++...+..|.+++++..... . .+.+.+++.+++..
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 87 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTL-INLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTF 87 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCch
Confidence 578999999999999999999 999999999999999998864322 1 23445677665543
No 321
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.9e-08 Score=96.03 Aligned_cols=69 Identities=22% Similarity=0.403 Sum_probs=50.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-----CcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-----GNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-----~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+.+|++++|.|+||+||||| ++++++...+. .|.++++++.... . .+.+.+++.+++..++...++.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 104 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTF-LRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFD 104 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHH
Confidence 478999999999999999999 99999987653 6889998865432 1 23445777777655554444443
No 322
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.82 E-value=3e-08 Score=106.09 Aligned_cols=152 Identities=12% Similarity=0.193 Sum_probs=92.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcC-----------------------CCC-------C--C
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDA-----------------------EHA-------F--D 184 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~-----------------------E~~-------~--~ 184 (440)
-+.+|++++|.|||||||||| ++++++.. .+..|.+++++ ... . .
T Consensus 22 ~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 100 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVL-MHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLS 100 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccC
Confidence 577999999999999999999 99999996 67888888862 100 0 0
Q ss_pred h----hhhhhhcccccc-eeecCCCCHHHHHHH---------------HHHHHhcCCcceEEEecccccCCchhhcccch
Q 013567 185 P----SYSKALGVDVEN-LIVCQPDNGEMALEI---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIG 244 (440)
Q Consensus 185 ~----~~a~~lGv~~~~-l~i~~~~~~ee~l~~---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g 244 (440)
. .+.+.+|+.+++ ..++...++.+.+.. +..++. .+-++...... ..++++ |
T Consensus 101 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~-~~~LSg--G 172 (520)
T TIGR03269 101 DKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE-----MVQLSHRITHI-ARDLSG--G 172 (520)
T ss_pred HHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----HcCChhhhhcC-cccCCH--H
Confidence 0 123446777665 333333343332221 111221 12223222222 245555 7
Q ss_pred hhhHHHHHHHH---------------------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 245 MQQIGLQARLM---------------------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 245 ~~q~~~~ar~l---------------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
++|+...++++ ..++..|..++++.+.|||+++|..+.+...++.......|+..
T Consensus 173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~ 248 (520)
T TIGR03269 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK 248 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe
Confidence 88888888876 23444455566667999999999988765555554444455443
No 323
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.81 E-value=1.8e-08 Score=108.74 Aligned_cols=139 Identities=16% Similarity=0.165 Sum_probs=83.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHH-----HH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEM-----AL 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee-----~l 210 (440)
=+++|++++|+||+|+||||| ++++.+...+..|.+++++.+..+. .+.+.+++.+++..+++....++ ..
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl-~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~ 442 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTL-AKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASL 442 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhH
Confidence 478999999999999999999 9999999999999999998765432 35566787777655443211111 11
Q ss_pred HHHHHHHhcCCcceEEEeccc-ccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHh
Q 013567 211 EIADRMCRSGAIDLICVDSVS-ALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASK 268 (440)
Q Consensus 211 ~~i~~l~~~~~~~lvVIDsl~-~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~ 268 (440)
+.+.+.++..+.+-. ++.+. .+-....+++ |++|+...+|++ ..+...+...++.
T Consensus 443 ~~~~~~~~~~~l~~~-~~~lp~g~~t~~~LSg--Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~ 519 (555)
T TIGR01194 443 DNAQQYLQRLEIADK-VKIEDGGFSTTTALST--GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR 519 (555)
T ss_pred HHHHHHHHHcCCchh-hcccccccCCcccCCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 112222222221111 11100 0000123444 778888888876 1222333333445
Q ss_pred cCCEEEEEecccc
Q 013567 269 AGCTLIFLNQIRY 281 (440)
Q Consensus 269 ~~~tVI~inhl~~ 281 (440)
.+.|+|+++|..+
T Consensus 520 ~~~tiiiisH~~~ 532 (555)
T TIGR01194 520 QGKTIIIISHDDQ 532 (555)
T ss_pred CCCEEEEEeccHH
Confidence 6899999999754
No 324
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=3.8e-08 Score=95.87 Aligned_cols=69 Identities=13% Similarity=0.261 Sum_probs=50.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|+||+||||| ++++.+...+ ..|.++++++.... ..+...+++.+++..++. .++.+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTL-lk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e 106 (259)
T PRK14260 29 DIYRNKVTAIIGPSGCGKSTF-IKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYE 106 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHH
Confidence 467999999999999999999 9999998764 36888888765422 123456787777765544 45444
Q ss_pred H
Q 013567 209 A 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 107 n 107 (259)
T PRK14260 107 N 107 (259)
T ss_pred H
Confidence 3
No 325
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=2.6e-08 Score=97.70 Aligned_cols=63 Identities=21% Similarity=0.501 Sum_probs=47.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCC----Ch-hhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAF----DP-SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~----~~-~~a~~lGv~~~~l~i~~ 202 (440)
-|++|++++|.|||||||||| +++++++.. +..|.++++++... +. .+.+.+++.+++..++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 107 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTV-LRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP 107 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch
Confidence 578999999999999999999 999999876 46788889876532 11 23455777776654443
No 326
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.80 E-value=3e-08 Score=108.25 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=102.9
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e 207 (440)
-|+.+ .+=+++|++++|.||+|+||||| ++++.+...++ .|.+++++.......+.+.+|+.+++-.+....++.
T Consensus 40 iL~~v-s~~i~~Ge~~aI~G~sGsGKSTL-L~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~ 117 (617)
T TIGR00955 40 LLKNV-SGVAKPGELLAVMGSSGAGKTTL-MNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVR 117 (617)
T ss_pred cccCC-EEEEeCCeEEEEECCCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHH
Confidence 35553 37899999999999999999999 99999887654 678999987654344566778887776655555665
Q ss_pred HHHHH------------------HHHHHhcCCcceEEEeccc-ccCC----chhhcccchhhhHHHHHHHH---------
Q 013567 208 MALEI------------------ADRMCRSGAIDLICVDSVS-ALTP----RAEIEGEIGMQQIGLQARLM--------- 255 (440)
Q Consensus 208 e~l~~------------------i~~l~~~~~~~lvVIDsl~-~l~~----~~el~~~~g~~q~~~~ar~l--------- 255 (440)
|.+.. ++.+++.-+ ++... .... ...+++ |++++...++++
T Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-----L~~~~~t~vg~~~~~~~LSg--GqrkRvsia~aL~~~p~vlll 190 (617)
T TIGR00955 118 EHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-----LRKCANTRIGVPGRVKGLSG--GERKRLAFASELLTDPPLLFC 190 (617)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-----chhcCcCccCCCCCCCCcCc--chhhHHHHHHHHHcCCCEEEe
Confidence 54432 222222111 11111 1111 023444 778888888876
Q ss_pred ------------HHHHHHHHHHHHhcCCEEEEEecccc-ccccccCCceeecccceeeee
Q 013567 256 ------------SQALRKMSGNASKAGCTLIFLNQIRY-KIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 256 ------------~~~l~~L~~lak~~~~tVI~inhl~~-~ig~~~~~~~~~~gG~~l~~~ 302 (440)
...+..|+.+++ .|.|||+++|... .+-.++++.....+|+...+.
T Consensus 191 DEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G 249 (617)
T TIGR00955 191 DEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249 (617)
T ss_pred eCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEEC
Confidence 244555555554 5899999999864 455556666566666555443
No 327
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.80 E-value=1.2e-08 Score=111.49 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=95.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC------------CCh-h----hhhhhcccccce--e
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA------------FDP-S----YSKALGVDVENL--I 199 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~------------~~~-~----~a~~lGv~~~~l--~ 199 (440)
-+++|++++|+|+|||||||| ++++.++..+..|.+++++... ... . +.+.+|+.+++. .
T Consensus 38 ~v~~Ge~~~lvG~nGsGKSTL-l~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~ 116 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVT-ALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTS 116 (623)
T ss_pred EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhh
Confidence 467999999999999999999 9999999988888888866311 011 1 123577777764 2
Q ss_pred ecCCCCHHHHHHH----------------HHHHHhcCCcceEEEec---ccccCCchhhcccchhhhHHHHHHHH-----
Q 013567 200 VCQPDNGEMALEI----------------ADRMCRSGAIDLICVDS---VSALTPRAEIEGEIGMQQIGLQARLM----- 255 (440)
Q Consensus 200 i~~~~~~ee~l~~----------------i~~l~~~~~~~lvVIDs---l~~l~~~~el~~~~g~~q~~~~ar~l----- 255 (440)
+....++.+.+.. +.+++. .+-+.. ..... ..++++ |++|+...++++
T Consensus 117 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~gL~~~~~~~~~~-~~~LSg--Gq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 117 LNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD-----QVRIPEAQTILSRY-PHQLSG--GMRQRVMIAMALSCRPA 188 (623)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HCCCCChhhHHhCC-CccCCH--HHHHHHHHHHHHhCCCC
Confidence 3333444443321 111111 222211 11122 255665 888888888887
Q ss_pred ----------------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 256 ----------------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 256 ----------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
.+++..|..+.++.+.|||+++|....+..+++.......|+..
T Consensus 189 lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 189 VLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 23444555555567999999999987766555555555555554
No 328
>PLN03211 ABC transporter G-25; Provisional
Probab=98.80 E-value=2.7e-08 Score=109.22 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=96.5
Q ss_pred HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHH
Q 013567 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG--GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~--~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
|+.+ .+=+++|++++|.||||+||||| ++++++..+++ .|.++++++... ....+++|+.+++..+....++.|.
T Consensus 84 L~~v-s~~i~~Ge~~aI~GpnGaGKSTL-L~iLaG~~~~~~~sG~I~inG~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 84 LNGV-TGMASPGEILAVLGPSGSGKSTL-LNALAGRIQGNNFTGTILANNRKPT-KQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred eeCC-EEEEECCEEEEEECCCCCCHHHH-HHHHhCCCCCCceeEEEEECCEECc-hhhccceEEECcccccCCcCCHHHH
Confidence 4443 36789999999999999999999 99999988764 788999987543 2334567887777666555566555
Q ss_pred HHHHHHHHhcCC-------------cceEEEecccc-c---CCchhhcccchhhhHHHHHHHH-----------------
Q 013567 210 LEIADRMCRSGA-------------IDLICVDSVSA-L---TPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 210 l~~i~~l~~~~~-------------~~lvVIDsl~~-l---~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
+.....+..... ++.+-++.... . .....+++ |++++...++++
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSg--GerqRv~ia~aL~~~P~iLlLDEPtsgLD 238 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISG--GERKRVSIAHEMLINPSLLILDEPTSGLD 238 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcCh--hhhhHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence 543221100000 00111111100 0 00123444 777887777776
Q ss_pred ----HHHHHHHHHHHHhcCCEEEEEecccc-ccccccCCceeeccccee
Q 013567 256 ----SQALRKMSGNASKAGCTLIFLNQIRY-KIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 256 ----~~~l~~L~~lak~~~~tVI~inhl~~-~ig~~~~~~~~~~gG~~l 299 (440)
...++.|+.++ +.|.|||+++|..+ .+-..++.......|+.+
T Consensus 239 ~~~~~~l~~~L~~l~-~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 239 ATAAYRLVLTLGSLA-QKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred HHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 23344444444 36899999999876 344444444444455443
No 329
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=2.2e-08 Score=107.40 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-|.+|++++|.|||||||||| ++++++...+..|.+++++
T Consensus 23 ~i~~Ge~~~liG~NGsGKSTL-l~~l~Gl~~p~~G~i~~~~ 62 (530)
T PRK15064 23 KFGGGNRYGLIGANGCGKSTF-MKILGGDLEPSAGNVSLDP 62 (530)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecC
Confidence 578999999999999999999 9999999988888888875
No 330
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.79 E-value=2.1e-08 Score=95.41 Aligned_cols=60 Identities=18% Similarity=0.343 Sum_probs=47.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhccccccee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLI 199 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~ 199 (440)
=|++|++++|.||||+||||| ++++.+...+..|.++++++.... . .+.+.+++.+++..
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 98 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTV-VALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPV 98 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccH
Confidence 478999999999999999999 999999999999999999875321 1 23345666665543
No 331
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.79 E-value=2.5e-08 Score=97.96 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=47.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC-----hhhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~ 202 (440)
=|++|++++|.|+|||||||| ++++.+... +..|.+++++..... ..+.+.+++.+++..++.
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTL-l~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 118 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTY-IKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP 118 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc
Confidence 478999999999999999999 999999986 477889998764321 123456777777655443
No 332
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.5e-08 Score=96.40 Aligned_cols=62 Identities=15% Similarity=0.343 Sum_probs=46.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCC------Ch-hhhhhhcccccceeecC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAF------DP-SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~------~~-~~a~~lGv~~~~l~i~~ 202 (440)
|++|++++|+|+||+||||| ++++.+...+ ..|.++++++... .. .+.+.+++.+++..++.
T Consensus 39 i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 112 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTF-LRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFP 112 (265)
T ss_pred EcCCcEEEEECCCCCCHHHH-HHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCc
Confidence 78999999999999999999 9999998764 5788888876431 11 23445677776654443
No 333
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=4.8e-08 Score=95.23 Aligned_cols=68 Identities=25% Similarity=0.380 Sum_probs=46.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC------CCCC--Ch-hhhhhhcccccceeecCCCCHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA------EHAF--DP-SYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~------E~~~--~~-~~a~~lGv~~~~l~i~~~~~~e 207 (440)
=+.+|++++|.|+||+||||| ++++++...+..|.+++++ +... .. .+.+.+++.+++..++...++.
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTL-l~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 108 (257)
T PRK14246 32 KIPNNSIFGIMGPSGSGKSTL-LKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIY 108 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHH
Confidence 467999999999999999999 9999999887765444443 3321 11 2344567766665444333443
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.79 E-value=2.2e-08 Score=100.98 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=107.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------hhhhhccccccee--ecCCCCHHHH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------YSKALGVDVENLI--VCQPDNGEMA- 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~a~~lGv~~~~l~--i~~~~~~ee~- 209 (440)
-+++|+.++|+|.+|||||||++ .+..+..+. |.++|+++...... +.+++-+.+++.+ +.+..++.++
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~-allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII 386 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGL-ALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII 386 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHH-HHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence 36899999999999999999954 455666544 88999998654332 3455555554432 1222333333
Q ss_pred ----------------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567 210 ----------------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 210 ----------------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------ 255 (440)
...+...+. -+-+|.-..-..+.|++| |++|+..+||++
T Consensus 387 ~EGL~vh~~~ls~~eR~~rv~~aL~-----EVGLDp~~r~RYPhEFSG--GQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 387 EEGLRVHEPKLSAAERDQRVIEALE-----EVGLDPATRNRYPHEFSG--GQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHH-----HcCCChhHhhcCCcccCc--chhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 222222222 344565444444578887 888888888887
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEE
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLE 308 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~ 308 (440)
.+++.-|+.+-++++.+-+||+|+...+..+|...-++-.|+.++......++
T Consensus 460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 460 SVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 57778888888999999999999998887766666666666666665554433
No 335
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.79 E-value=1.5e-08 Score=112.36 Aligned_cols=136 Identities=19% Similarity=0.257 Sum_probs=86.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC-----------C-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ-----------P- 203 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~-----------~- 203 (440)
=+++|+.++|+|++||||||| ++++.+...+..|.+++|+.+..+- .+.+.+|+.+++..++. +
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~ 579 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTI-AKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT 579 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCC
Confidence 478999999999999999999 9999999999999999998764322 36778888876654432 2
Q ss_pred CCHHHHHHHHHHH-----HhcC--CcceEEEecccccCCchhhcccchhhhHHHHHHHHH-----------------HHH
Q 013567 204 DNGEMALEIADRM-----CRSG--AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMS-----------------QAL 259 (440)
Q Consensus 204 ~~~ee~l~~i~~l-----~~~~--~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~-----------------~~l 259 (440)
.+.+++.+.++.. +.+. +.+-.+-+. ...++| |++|+...+|++- ..-
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~------G~~LSG--GQrQRiaLARall~~p~iliLDEptS~LD~~te 651 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEG------GANLSG--GQRQRLEIARALVRNPSILILDEATSALDPETE 651 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCcCcccceeccC------CCCCCH--HHHHHHHHHHHHhhCCCEEEEECccccCCHHHH
Confidence 2233333332221 1111 111111110 123444 7888888888761 122
Q ss_pred HHHHHHHHhcCCEEEEEecccccc
Q 013567 260 RKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 260 ~~L~~lak~~~~tVI~inhl~~~i 283 (440)
..+...+++.++|+|+++|-.+.+
T Consensus 652 ~~i~~~l~~~~~T~IiitHrl~~i 675 (710)
T TIGR03796 652 KIIDDNLRRRGCTCIIVAHRLSTI 675 (710)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHH
Confidence 233333445689999999987544
No 336
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.1e-08 Score=95.91 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=49.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--c---CCcEEEEcCCCCCC-----hhhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--L---GGNAMLVDAEHAFD-----PSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~---~~~vv~id~E~~~~-----~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.||||+||||| ++++.+... + ..|.++++++.... ..+.+.+++.+++..++. .++.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 104 (252)
T PRK14239 27 DFYPNEITALIGPSGSGKSTL-LRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYE 104 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHH
Confidence 468999999999999999999 999998743 4 37889998865421 123456777777655544 44443
Q ss_pred H
Q 013567 209 A 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 105 n 105 (252)
T PRK14239 105 N 105 (252)
T ss_pred H
Confidence 3
No 337
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.79 E-value=1.6e-08 Score=121.23 Aligned_cols=155 Identities=14% Similarity=0.138 Sum_probs=98.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l 216 (440)
.+++|++++|.|+||+||||| ++++.++..+..|.+++++.+.... ...+.+|+.+++..+.+..++.+.+.....+
T Consensus 952 ~I~~Gei~aLLG~NGAGKSTL-LkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~l 1030 (2272)
T TIGR01257 952 TFYENQITAFLGHNGAGKTTT-LSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030 (2272)
T ss_pred EEcCCcEEEEECCCCChHHHH-HHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHh
Confidence 588999999999999999999 9999999999999999998764322 2345688888776666666666654432111
Q ss_pred Hh-------c---CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567 217 CR-------S---GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA 266 (440)
Q Consensus 217 ~~-------~---~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la 266 (440)
.. . .-++.+-++...... ..++++ |++|+...++++ ++.+.++....
T Consensus 1031 kg~~~~~~~~~v~~lL~~vgL~~~~~~~-~~~LSG--GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEE-AQDLSG--GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 00 0 001111122222222 244444 677777777766 23333333333
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccce
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA 298 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~ 298 (440)
+ .|.|||+++|..+.+...++.......|+.
T Consensus 1108 ~-~g~TIIltTHdmdea~~laDrI~iL~~GkL 1138 (2272)
T TIGR01257 1108 R-SGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138 (2272)
T ss_pred h-CCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 4 489999999998876655554445555554
No 338
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.79 E-value=4.4e-08 Score=104.09 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=82.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccccce---eecCCCCHHH---
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDVENL---IVCQPDNGEM--- 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~~~l---~i~~~~~~ee--- 208 (440)
-+++|++++|.|+|||||||| ++++.+..++..|.++++++...... +.+.+++.+++. .+++..+..+
T Consensus 270 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 348 (491)
T PRK10982 270 DLHKGEILGIAGLVGAKRTDI-VETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSL 348 (491)
T ss_pred EEeCCcEEEEecCCCCCHHHH-HHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhee
Confidence 378999999999999999999 99999999999999999876432211 123355554431 1122111110
Q ss_pred ------------------HHHHHHHHHhcCCcceEEE-ecccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567 209 ------------------ALEIADRMCRSGAIDLICV-DSVSALTPRAEIEGEIGMQQIGLQARLM-------------- 255 (440)
Q Consensus 209 ------------------~l~~i~~l~~~~~~~lvVI-Dsl~~l~~~~el~~~~g~~q~~~~ar~l-------------- 255 (440)
....++.++. .+-+ +...... ..++++ |++|+...++++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~l~~~~~~~~-~~~LSg--Gq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 349 ISNIRNYKNKVGLLDNSRMKSDTQWVID-----SMRVKTPGHRTQ-IGSLSG--GNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred hhhhhhhcccccccCcHHHHHHHHHHHH-----hcCccCCCcccc-cccCCc--HHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 0111111111 1112 1111111 245555 777877777776
Q ss_pred ------HHHHHHHHHHHHhcCCEEEEEeccccccccc
Q 013567 256 ------SQALRKMSGNASKAGCTLIFLNQIRYKIGVY 286 (440)
Q Consensus 256 ------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~ 286 (440)
...+.++...+++.+.|||+++|..+.+...
T Consensus 421 gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~ 457 (491)
T PRK10982 421 GIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGI 457 (491)
T ss_pred ccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhh
Confidence 3344444444456799999999998766543
No 339
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.78 E-value=2.2e-08 Score=107.33 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=92.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCCh---h---h-hhhhccccccee--ecCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFDP---S---Y-SKALGVDVENLI--VCQPD 204 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~~---~---~-a~~lGv~~~~l~--i~~~~ 204 (440)
-+.+|++++|.|||||||||| ++++++...+ ..|.++++++..... . + .+.+|+.+++.. +....
T Consensus 31 ~i~~Ge~~~iiG~nGsGKSTL-l~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~ 109 (529)
T PRK15134 31 QIEAGETLALVGESGSGKSVT-ALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLH 109 (529)
T ss_pred EEeCCCEEEEECCCCCcHHHH-HHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchh
Confidence 567999999999999999999 9999999875 578899988754221 1 1 135788777642 22223
Q ss_pred CHHHHHH----------------HHHHHHhcCCcceEEEeccc---ccCCchhhcccchhhhHHHHHHHH----------
Q 013567 205 NGEMALE----------------IADRMCRSGAIDLICVDSVS---ALTPRAEIEGEIGMQQIGLQARLM---------- 255 (440)
Q Consensus 205 ~~ee~l~----------------~i~~l~~~~~~~lvVIDsl~---~l~~~~el~~~~g~~q~~~~ar~l---------- 255 (440)
++.+.+. .+.+++. .+-++... .-. ..++++ |++|+...++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~gl~~~~~~~~~~-~~~LSg--Ge~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 110 TLEKQLYEVLSLHRGMRREAARGEILNCLD-----RVGIRQAAKRLTDY-PHQLSG--GERQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----HCCCCChHHHHhhC-CcccCH--HHHHHHHHHHHHhcCCCEEEEc
Confidence 3333221 1111111 12222211 111 245555 788888888876
Q ss_pred -----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 256 -----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 256 -----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
..++..|.++.++.+.|||+++|..+.+...++.......|...
T Consensus 182 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 182 EPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 23344444544556899999999987665555555455555543
No 340
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=3.6e-08 Score=95.61 Aligned_cols=62 Identities=24% Similarity=0.489 Sum_probs=45.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCCh-----hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFDP-----SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~~-----~~a~~lGv~~~~l~i~ 201 (440)
-|++|++++|.|||||||||| ++++.++..+ ..|.++++++..... ...+.+++.+++..++
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 28 SIPKNRVTALIGPSGCGKSTL-LRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred EECCCcEEEEECCCCCCHHHH-HHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 468999999999999999999 9999988642 368888887653321 2334577776665444
No 341
>PRK13409 putative ATPase RIL; Provisional
Probab=98.78 E-value=1.3e-08 Score=110.24 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=36.4
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
.-+++|++++|.||||+||||| ++++++..++..|.++++
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTL-lk~L~Gl~~p~~G~I~~~ 399 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTF-AKLLAGVLKPDEGEVDPE 399 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEEe
Confidence 4579999999999999999999 999999999888888775
No 342
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.78 E-value=4.3e-08 Score=96.03 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=37.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
-|++|++++|.||||+||||| ++++++...+..|.++++++
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTL-lk~L~Gl~~p~~G~I~~~g~ 86 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTL-SNIIGGSLSPTVGKVDRNGE 86 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCcCCCceEEEECCE
Confidence 367999999999999999999 99999999888888888774
No 343
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=3.9e-08 Score=99.37 Aligned_cols=155 Identities=12% Similarity=0.133 Sum_probs=89.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCCh-----hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFDP-----SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~~-----~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-|++|++++|+|++||||||| ++++.+... +..|.++|++...... .+.+.+++.++...++. .+..+
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTL-l~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~e 181 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTF-LRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFD 181 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHH
Confidence 588999999999999999999 899988875 3578899998865321 23456787777655543 33332
Q ss_pred HHHH----------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567 209 ALEI----------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 209 ~l~~----------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
.+.. +...++.....- -++....-. ...+++ |++|+...+|++
T Consensus 182 Ni~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~l~~~~~~~-~~~LSg--GqkqRl~LARAl~~~p~IlLLDEPts~LD 257 (329)
T PRK14257 182 NVAYGPRNNGINDRKILEKIVEKSLKSAALWD-EVKDDLDKA-GNALSG--GQQQRLCIARAIALEPEVLLMDEPTSALD 257 (329)
T ss_pred HHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-hhhhhhhCC-cccCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 2221 111111111100 011111111 133443 788888888876
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
...+..+...+.+ ++|||+++|..+.+...++.......|....
T Consensus 258 ~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e 304 (329)
T PRK14257 258 PIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEE 304 (329)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 2233333333333 6999999999876554344444444444433
No 344
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.77 E-value=2.7e-08 Score=93.31 Aligned_cols=40 Identities=35% Similarity=0.531 Sum_probs=36.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-+++|++++|.||||+||||| ++++.+...+..|.+++++
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTL-l~~i~G~~~~~~G~i~~~g 66 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSL-LSALLGELEKLSGSVSVPG 66 (204)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCcCCCCCCeEEEcC
Confidence 478999999999999999999 9999999999899888876
No 345
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.77 E-value=4.2e-08 Score=96.70 Aligned_cols=61 Identities=25% Similarity=0.386 Sum_probs=48.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
-|++|++++|+|++|+||||| ++++.++.. ..|.+++++...... .+.+.+++.+++..++
T Consensus 26 ~I~~Ge~~~IvG~nGsGKSTL-l~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf 89 (275)
T cd03289 26 SISPGQRVGLLGRTGSGKSTL-LSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIF 89 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccc
Confidence 578999999999999999999 999999987 679999998754321 2455678877665544
No 346
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.77 E-value=3.1e-08 Score=109.42 Aligned_cols=138 Identities=23% Similarity=0.278 Sum_probs=86.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC-----------CC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ-----------PD 204 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~-----------~~ 204 (440)
=+++|+.++|+|++||||||| ++++.+...+..|.+++|+.+..+. .+.+.+|+.+++..+++ +.
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~ 553 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTL-LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL 553 (686)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCC
Confidence 488999999999999999999 9999999999999999998764332 36677888887665543 22
Q ss_pred CHHHHHHHHHHH-----HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------------HHHHHHH
Q 013567 205 NGEMALEIADRM-----CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-----------------SQALRKM 262 (440)
Q Consensus 205 ~~ee~l~~i~~l-----~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-----------------~~~l~~L 262 (440)
+.+++.+.++.. +.+..- -.|..-.-- ...+++ |++|+...+|++ ...-+.+
T Consensus 554 ~~e~i~~al~~a~l~~~i~~lp~---G~dt~ige~-G~~LSG--GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i 627 (686)
T TIGR03797 554 TLDEAWEAARMAGLAEDIRAMPM---GMHTVISEG-GGTLSG--GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV 627 (686)
T ss_pred CHHHHHHHHHHcCcHHHHHhccc---cccccccCC-CCCCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 333333332221 111000 011110000 123343 788888888876 1122333
Q ss_pred HHHHHhcCCEEEEEecccccc
Q 013567 263 SGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 263 ~~lak~~~~tVI~inhl~~~i 283 (440)
.+.+++.++|+|+++|-.+.+
T Consensus 628 ~~~L~~~~~T~IiItHr~~~i 648 (686)
T TIGR03797 628 SESLERLKVTRIVIAHRLSTI 648 (686)
T ss_pred HHHHHHhCCeEEEEecChHHH
Confidence 334445578999999987544
No 347
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.77 E-value=2.5e-08 Score=107.99 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=51.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
=+++|+.++|+|++||||||| ++++.+...+..|.+++++.+..+. .+.+.+++.+++..++
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTL-l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf 429 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTI-ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLF 429 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHH-HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceee
Confidence 478999999999999999999 9999999999999999998754322 3567788888765543
No 348
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=5.8e-08 Score=94.01 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=48.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--c---CCcEEEEcCCCCCC----h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--L---GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~---~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
=|.+|++++|.|+||+||||| ++++.++.. + ..|.++++++.... . .+.+.+++.+++..++. .++.+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 104 (252)
T PRK14255 27 DFNQNEITALIGPSGCGKSTY-LRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYE 104 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHH
Confidence 478999999999999999999 999999764 3 37889998875421 1 23345777776654443 34443
No 349
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=98.75 E-value=7.6e-08 Score=94.53 Aligned_cols=133 Identities=17% Similarity=0.251 Sum_probs=91.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh----------hcCCcEEEEcCCCCCChh------hhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ----------KLGGNAMLVDAEHAFDPS------YSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~----------~~~~~vv~id~E~~~~~~------~a~~lGv~~~~l~i~~ 202 (440)
-+..|-...|+|++|.||||++|.++..+. ...++++|++.|...+.. ...++|+.+.++...+
T Consensus 85 ~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~d 164 (402)
T COG3598 85 FFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMD 164 (402)
T ss_pred HhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhhee
Confidence 345666788889999999999998877664 245899999999877664 2446787765443222
Q ss_pred C------CC----H-HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 013567 203 P------DN----G-EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGC 271 (440)
Q Consensus 203 ~------~~----~-ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~ 271 (440)
. .. + ..++........+..++++|||++..++...+.. ..+ +..+++++.+++..++|
T Consensus 165 ltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s--------~vq---v~~fi~~~rkla~~l~c 233 (402)
T COG3598 165 LTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSIS--------DVQ---VKEFIKKTRKLARNLEC 233 (402)
T ss_pred ccccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCCccch--------hHH---HHHHHHHHHHHHHhcCC
Confidence 2 11 0 1234444444556679999999999888532222 122 45667777778899999
Q ss_pred EEEEEeccccc
Q 013567 272 TLIFLNQIRYK 282 (440)
Q Consensus 272 tVI~inhl~~~ 282 (440)
.||++.|....
T Consensus 234 aIiy~hHtsks 244 (402)
T COG3598 234 AIIYIHHTSKS 244 (402)
T ss_pred eEEEEeccccc
Confidence 99999998753
No 350
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.75 E-value=3.6e-08 Score=106.11 Aligned_cols=140 Identities=11% Similarity=0.128 Sum_probs=84.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHH----HHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGE----MALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~e----e~l~ 211 (440)
-+++|+.++|+||+||||||| ++++.+...+..|.+++++.+..+. .+.+.+++.+++..+++....+ .-.+
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~ 423 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTL-AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPA 423 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHH
Confidence 478999999999999999999 8999999999999999998754332 3556778877766544321100 0011
Q ss_pred HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhcC
Q 013567 212 IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKAG 270 (440)
Q Consensus 212 ~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~~ 270 (440)
.+.+.++..+.+..+ +..........+++ |++|+...+|++ ..+.+.|....++.+
T Consensus 424 ~~~~~~~~~~l~~~~-~~~~~~~~G~~LSg--Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~ 500 (547)
T PRK10522 424 LVEKWLERLKMAHKL-ELEDGRISNLKLSK--GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMG 500 (547)
T ss_pred HHHHHHHHcCCchhh-hccccCCCCCCCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 122222221211110 00000000123444 788888888876 223344444444568
Q ss_pred CEEEEEeccccc
Q 013567 271 CTLIFLNQIRYK 282 (440)
Q Consensus 271 ~tVI~inhl~~~ 282 (440)
.|||+++|..+.
T Consensus 501 ~tvi~itH~~~~ 512 (547)
T PRK10522 501 KTIFAISHDDHY 512 (547)
T ss_pred CEEEEEEechHH
Confidence 999999997643
No 351
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.74 E-value=5.8e-08 Score=94.91 Aligned_cols=63 Identities=17% Similarity=0.373 Sum_probs=47.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCC----C-hhhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAF----D-PSYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~----~-~~~a~~lGv~~~~l~i~~ 202 (440)
=+++|++++|.|+||+||||| +++++++.. +..|.++++++... . ..+.+.+++.+++..++.
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 104 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTI-LRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP 104 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc
Confidence 478999999999999999999 999999875 25788999886532 1 123456777777655443
No 352
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.1e-07 Score=88.71 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=53.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
-+++|++.+|.||||+||||| |+.+.+...+++|.+-+++...... .+++..++.+++-.+.-|.++.++
T Consensus 23 ~~~pGev~ailGPNGAGKSTl-Lk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eV 95 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTL-LKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEV 95 (259)
T ss_pred eccCCcEEEEECCCCccHHHH-HHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHH
Confidence 478999999999999999999 9999999998888887776653322 367778888877665545444443
No 353
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.74 E-value=5.6e-08 Score=103.25 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=42.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCC--h--hhhhhhcccccc
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFD--P--SYSKALGVDVEN 197 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~--~--~~a~~lGv~~~~ 197 (440)
+++|++++|.|||||||||| ++++.+...+ ..|.++++++.... . .+.+.+|+.+++
T Consensus 283 i~~Ge~~~i~G~NGsGKSTL-l~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 344 (490)
T PRK10938 283 VNPGEHWQIVGPNGAGKSTL-LSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSS 344 (490)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHH
Confidence 78999999999999999999 9999997654 47888888764311 1 123456666654
No 354
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.73 E-value=2.3e-08 Score=109.82 Aligned_cols=61 Identities=28% Similarity=0.380 Sum_probs=52.1
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhccccccee
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLI 199 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~ 199 (440)
=-|++|+.++|+|++||||||| ++++.++..|..|.+++|+-+-.+- .+++.+|+.+++..
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL-~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~ 557 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTL-LKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch
Confidence 3699999999999999999999 9999999999999999998864332 26788998886544
No 355
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=6.5e-08 Score=96.66 Aligned_cols=62 Identities=16% Similarity=0.373 Sum_probs=47.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-----cCCcEEEEcCCCCCC----h-hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-----LGGNAMLVDAEHAFD----P-SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-----~~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~ 201 (440)
-|.+|++++|+|+||+||||| ++++++... +..|.+++++..... . .+.+.+++.+++..++
T Consensus 67 ~i~~Ge~~~IvG~nGsGKSTL-l~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 138 (305)
T PRK14264 67 DIPEKSVTALIGPSGCGKSTF-LRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPF 138 (305)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccc
Confidence 378999999999999999999 999999875 468889998864321 1 2345677777765444
No 356
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.73 E-value=3.4e-08 Score=107.13 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=49.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i 200 (440)
-+++|+.++|+|++||||||| ++++.+.. +..|.+++++.+..+- .+.+.+++.+++.++
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL-~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~L 434 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSL-LNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQL 434 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcC
Confidence 478999999999999999999 89999999 8899999998654322 366778888766544
No 357
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.72 E-value=8.1e-08 Score=103.68 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=88.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHH-HHH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIA-DRM- 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i-~~l- 216 (440)
-+++|++++|.|||||||||| ++++++...+..|.++++.. ..+|+.+++..+.+..++.+.+... ..+
T Consensus 29 ~i~~Ge~~~iiG~NGsGKSTL-lk~i~G~~~p~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~ 99 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTL-LRIMAGVDKEFEGEARPAPG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVK 99 (556)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHH
Confidence 578999999999999999999 99999999888888887531 2355555554444333443332210 000
Q ss_pred -----H-------hcC--------------------------------CcceEEEecccccCCchhhcccchhhhHHHHH
Q 013567 217 -----C-------RSG--------------------------------AIDLICVDSVSALTPRAEIEGEIGMQQIGLQA 252 (440)
Q Consensus 217 -----~-------~~~--------------------------------~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~a 252 (440)
. ... -.+.+-++.. .. +..++++ |++++...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~-~~~~LSg--Gqkqrv~la 175 (556)
T PRK11819 100 AALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DA-KVTKLSG--GERRRVALC 175 (556)
T ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcc-cC-chhhcCH--HHHHHHHHH
Confidence 0 000 0001111111 11 1244554 777777777
Q ss_pred HHH-----------------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccce
Q 013567 253 RLM-----------------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA 298 (440)
Q Consensus 253 r~l-----------------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~ 298 (440)
+++ ......+..++++.+.|||+++|..+.+...++.......|..
T Consensus 176 ~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 176 RLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred HHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 776 2344455666666677999999998877655554445555544
No 358
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=4.6e-08 Score=90.22 Aligned_cols=134 Identities=22% Similarity=0.250 Sum_probs=87.1
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH----------
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE---------- 207 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e---------- 207 (440)
=+|.+|+.+.+.||+||||||| |+++++...+..|.+-+++.....+- ..-|+.++|--+.+-.++-
T Consensus 26 L~ia~ge~vv~lGpSGcGKTTL-Lnl~AGf~~P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~ 102 (259)
T COG4525 26 LTIASGELVVVLGPSGCGKTTL-LNLIAGFVTPSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR 102 (259)
T ss_pred eeecCCCEEEEEcCCCccHHHH-HHHHhcCcCcccceEEECCEeccCCC--ccceeEeccCccchhhHHHHHHHHHHHhc
Confidence 4788999999999999999999 99999999999999988876433221 1234555544333332222
Q ss_pred -----HHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHH-H
Q 013567 208 -----MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALR-K 261 (440)
Q Consensus 208 -----e~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~-~ 261 (440)
+-.+++.+++. +|-+.....-+ ..+++| |++|+...+|++ ++.++ .
T Consensus 103 Gi~k~~R~~~a~q~l~-----~VgL~~~~~~~-i~qLSG--GmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQel 174 (259)
T COG4525 103 GIEKAQRREIAHQMLA-----LVGLEGAEHKY-IWQLSG--GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174 (259)
T ss_pred CCCHHHHHHHHHHHHH-----HhCcccccccc-eEeecc--hHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHH
Confidence 22223333322 23333322222 255565 788888888876 23333 3
Q ss_pred HHHHHHhcCCEEEEEeccccc
Q 013567 262 MSGNASKAGCTLIFLNQIRYK 282 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ 282 (440)
|..+.++.|.-+++|+|..++
T Consensus 175 Lldlw~~tgk~~lliTH~ieE 195 (259)
T COG4525 175 LLDLWQETGKQVLLITHDIEE 195 (259)
T ss_pred HHHHHHHhCCeEEEEeccHHH
Confidence 556778899999999998764
No 359
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.72 E-value=4.1e-08 Score=108.93 Aligned_cols=62 Identities=19% Similarity=0.348 Sum_probs=51.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
=+++|+.++|+||+|+||||| ++++.+...+.+|.+++|+.+..+. .+.+.+++.+++..++
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTL-l~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF 567 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTV-AALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF 567 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcccc
Confidence 478999999999999999999 9999999999999999998754322 3567788877765543
No 360
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=8.7e-08 Score=92.68 Aligned_cols=62 Identities=18% Similarity=0.411 Sum_probs=46.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--c---CCcEEEEcCCCCCC----h-hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--L---GGNAMLVDAEHAFD----P-SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~---~~~vv~id~E~~~~----~-~~a~~lGv~~~~l~i~ 201 (440)
-|++|++++|.|+||+||||| ++++.+... + ..|.+++++..... . .+.+.+++.+++..++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14266 25 DIPKNSVTALIGPSGCGKSTF-IRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF 96 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence 478999999999999999999 999998764 2 67889998875432 1 2345677777664443
No 361
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.70 E-value=8.2e-08 Score=93.46 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=47.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i 200 (440)
=+++|++++|.|+||+||||| ++++.+...+..|.+++++..... ..+.+.+++.+++..+
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l 106 (257)
T cd03288 43 YIKPGQKVGICGRTGSGKSSL-SLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPIL 106 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcc
Confidence 478999999999999999999 999999999999999998865322 1234556766655433
No 362
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.69 E-value=5.7e-08 Score=105.22 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=51.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
=+++|+.++|+||+|+||||| ++++.+...+..|.+++++.+..+. .+.+.+++.+++..++
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL-~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 426 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTL-LQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF 426 (574)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhh
Confidence 478999999999999999999 9999999999999999998754332 3566788887765544
No 363
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.68 E-value=1.1e-07 Score=92.82 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=37.3
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEE
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAML 176 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~ 176 (440)
.|+.+- =+.+|++++|.||||+||||| ++++.++.++..|.++
T Consensus 16 ~l~~i~--~i~~Ge~~~IvG~nGsGKSTL-lk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 16 KLHRLP--VPREGQVLGLVGPNGIGKSTA-LKILAGKLKPNLGKFD 58 (255)
T ss_pred hhhcCC--CCCCCCEEEEECCCCCCHHHH-HHHHhCCcCCCCceEe
Confidence 455543 278999999999999999999 9999999999888886
No 364
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.68 E-value=3e-07 Score=84.66 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=69.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-h---------hhhhhhccccccee-ecCCCCH-
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-P---------SYSKALGVDVENLI-VCQPDNG- 206 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~---------~~a~~lGv~~~~l~-i~~~~~~- 206 (440)
=+++|+++.|.||||+||||| ++++.. ..+.+.+....... . .....+++....+. .....+.
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTL-l~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTL-VNEGLY----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhh----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHH
Confidence 478999999999999999999 777742 33445454331110 0 12233443211000 0111222
Q ss_pred -HHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 207 -EMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 207 -ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
.+.+.+++.++..+.++++++|....-.+.. ..+.+.+.+ ..+ ++.+.|||+++|..+.+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~-------------~~~~l~~~l---~~~-~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQ-------------DINQLLEVI---KGL-IDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH-------------HHHHHHHHH---HHH-HhCCCEEEEEeCCHHHH
Confidence 3345566666664458999999987665311 111223333 333 34699999999997643
No 365
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.67 E-value=5.9e-08 Score=103.98 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=51.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--Chhhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--DPSYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--~~~~a~~lGv~~~~l~i~ 201 (440)
=+++|+.++|+||+||||||| ++++.+...+..|.+++++.+.. ...+.+.+++.+++.+++
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTL-l~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF 420 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTL-LMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLF 420 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccc
Confidence 478999999999999999999 89999999999999999986533 223566788888766544
No 366
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.67 E-value=7.2e-08 Score=104.71 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=52.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~ 202 (440)
=+++|+.++|+|++||||||| ++++.+...+..|.+++++.+..+ . .+.+.+++.+++..+++
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTL-l~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~ 428 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTL-ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA 428 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc
Confidence 478999999999999999999 999999999999999999875432 2 36777888887665543
No 367
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.67 E-value=9.2e-08 Score=103.42 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=59.9
Q ss_pred ccccccCcHH----HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhccc
Q 013567 122 VETFPSGCLT----LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVD 194 (440)
Q Consensus 122 ~~~i~TGi~~----LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~ 194 (440)
.+.++.+++. |+.+- =-+++|+.++|+||+||||||+ .+++.+...+..|.+++|+.+..+- .+.+.+++.
T Consensus 331 f~~vsf~y~~~~~vl~~is-~~i~~Ge~vaiVG~sGsGKSTl-~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 331 FENVSFSYPGKKPVLKDIS-FSIEPGEKVAIVGPSGSGKSTL-IKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEcCCCCccccCce-EEEcCCCEEEEECCCCCCHHHH-HHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 4456666653 33221 3489999999999999999999 9999999999999999987654433 367788888
Q ss_pred ccceeecC
Q 013567 195 VENLIVCQ 202 (440)
Q Consensus 195 ~~~l~i~~ 202 (440)
+++.+++.
T Consensus 409 ~Qd~~LF~ 416 (567)
T COG1132 409 SQDPLLFS 416 (567)
T ss_pred cccceeec
Confidence 87665544
No 368
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.66 E-value=1.4e-07 Score=101.81 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=46.4
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
--|++|++++|.|||||||||| ++++++...+..|.++++.. ..+|+.+++..+.+..++.+
T Consensus 26 ~~i~~Ge~~~liG~NGsGKSTL-l~~i~G~~~p~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e 87 (552)
T TIGR03719 26 LSFFPGAKIGVLGLNGAGKSTL-LRIMAGVDKEFNGEARPAPG--------IKVGYLPQEPQLDPTKTVRE 87 (552)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecCC--------CEEEEEeccCCCCCCCcHHH
Confidence 3578999999999999999999 99999999888888887631 24555555544444434433
No 369
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.65 E-value=9.2e-08 Score=102.49 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=51.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~ 201 (440)
=+++|+.++|+||+|+||||| ++++.+...+..|.+++++.+..+ ..+.+.+++.+++.+++
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf 408 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTL-LNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF 408 (529)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc
Confidence 578999999999999999999 999999999999999999875432 23567788887766554
No 370
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.1e-07 Score=102.00 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-|++|++++|.|||||||||| ++++++...+..|.+++++
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTL-l~~i~G~~~p~~G~i~~~~ 380 (530)
T PRK15064 341 LLEAGERLAIIGENGVGKTTL-LRTLVGELEPDSGTVKWSE 380 (530)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECC
Confidence 478999999999999999999 9999999988888888865
No 371
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.65 E-value=7.4e-08 Score=101.96 Aligned_cols=43 Identities=33% Similarity=0.415 Sum_probs=38.6
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
=-+++|++++|.||||+||||| ++++++...+..|.+++++..
T Consensus 45 fsI~~GEivgIiGpNGSGKSTL-LkiLaGLl~P~sGeI~I~G~~ 87 (549)
T PRK13545 45 FEVPEGEIVGIIGLNGSGKSTL-SNLIAGVTMPNKGTVDIKGSA 87 (549)
T ss_pred EEEeCCCEEEEEcCCCCCHHHH-HHHHhCCCCCCceEEEECCEe
Confidence 3578999999999999999999 999999999989999887653
No 372
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.65 E-value=1.3e-07 Score=86.60 Aligned_cols=120 Identities=16% Similarity=0.251 Sum_probs=73.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcc----cccceeecCCCCHHHHHHHHHHHHhcC
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGV----DVENLIVCQPDNGEMALEIADRMCRSG 220 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv----~~~~l~i~~~~~~ee~l~~i~~l~~~~ 220 (440)
++.|.|++|||||+||.+++.. .+.+++|+.+....+..+.+++.- .+..+... ....++.+.+.. ..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~--E~~~~l~~~l~~---~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTI--ETPRDLVSALKE---LD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEe--ecHHHHHHHHHh---cC
Confidence 4789999999999999999865 467899999999888875555322 12222111 112222232222 12
Q ss_pred CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013567 221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQ 278 (440)
Q Consensus 221 ~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inh 278 (440)
+.+.|+||+++.+.. ..+..+.+ .. ...+...+..|...+++.++++|+++.
T Consensus 73 ~~~~VLIDclt~~~~-n~l~~~~~--~~---~~~~~~~i~~l~~~l~~~~~~~viVsn 124 (169)
T cd00544 73 PGDVVLIDCLTLWVT-NLLFADLE--EW---EAAIADEIDALLAAVRNKPGTLILVSN 124 (169)
T ss_pred CCCEEEEEcHhHHHH-HhCCCccc--cc---hhHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 567899999999874 33321100 00 011334556667777778888887764
No 373
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.64 E-value=1.3e-07 Score=97.97 Aligned_cols=64 Identities=20% Similarity=0.370 Sum_probs=54.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC--CChh-hhhhhcccccceeecCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA--FDPS-YSKALGVDVENLIVCQP 203 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~--~~~~-~a~~lGv~~~~l~i~~~ 203 (440)
-+++|+..+|.||+||||||| .+++.+...+..|.+.+|+-+- ++++ +-+.+|+-++++.+++.
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTL-aR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G 424 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTL-ARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424 (580)
T ss_pred EecCCceEEEECCCCccHHHH-HHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCC
Confidence 368999999999999999999 8999999999999999998753 3333 67789999988876643
No 374
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.64 E-value=9.5e-08 Score=105.75 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i 200 (440)
-+++|+.++|+|++||||||| ++++.+...+..|.+++++.+..+- .+.+.+++.+++..+
T Consensus 479 ~i~~G~~vaivG~sGsGKSTL-~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l 542 (694)
T TIGR01846 479 DIKPGEFIGIVGPSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542 (694)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee
Confidence 479999999999999999999 9999999999999999998764322 356678887766544
No 375
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.63 E-value=7.7e-08 Score=105.45 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=35.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV 177 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i 177 (440)
-|.+|++++|+|||||||||| ++++.+...+..|.+++
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTL-lk~l~G~~~p~~G~i~~ 378 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTL-LKLMLGQLQADSGRIHC 378 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEE
Confidence 478999999999999999999 99999998888888877
No 376
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.63 E-value=4.8e-07 Score=81.15 Aligned_cols=135 Identities=16% Similarity=0.277 Sum_probs=88.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC-----CC-h---hhhhhhcccccceeecCCCCHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA-----FD-P---SYSKALGVDVENLIVCQPDNGE-- 207 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~-----~~-~---~~a~~lGv~~~~l~i~~~~~~e-- 207 (440)
--+.|+.+.+.||+|+|||+| ++.+.-+.-+..|.+-|.+.+- +. . .+.+.+|+.++...+++..++-
T Consensus 24 ~~~~getlvllgpsgagkssl-lr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~en 102 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSL-LRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQEN 102 (242)
T ss_pred cCCCCCEEEEECCCCCchHHH-HHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHH
Confidence 347899999999999999999 9998888888888887765431 11 1 1567789999887776655442
Q ss_pred --------------HHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH------------------
Q 013567 208 --------------MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 208 --------------e~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l------------------ 255 (440)
+....+.++++ .+-+...+.-+| -.++| |++|+..++|++
T Consensus 103 lieap~kv~gl~~~qa~~~a~ellk-----rlrl~~~adr~p-lhlsg--gqqqrvaiaralmmkpqvllfdeptaaldp 174 (242)
T COG4161 103 LIEAPCRVLGLSKDQALARAEKLLK-----RLRLKPYADRYP-LHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred HHhhhHHHhCCCHHHHHHHHHHHHH-----HhccccccccCc-eeccc--chhhhHHHHHHHhcCCcEEeecCcccccCH
Confidence 22233333332 222333444443 44555 778888888875
Q ss_pred --HHHHHHHHHHHHhcCCEEEEEeccccc
Q 013567 256 --SQALRKMSGNASKAGCTLIFLNQIRYK 282 (440)
Q Consensus 256 --~~~l~~L~~lak~~~~tVI~inhl~~~ 282 (440)
...+-.+.+-+.+.|+|-++++|..+.
T Consensus 175 eitaqvv~iikel~~tgitqvivthev~v 203 (242)
T COG4161 175 EITAQIVSIIKELAETGITQVIVTHEVEV 203 (242)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEeehhH
Confidence 222333444456789999999998653
No 377
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.63 E-value=1.1e-07 Score=102.37 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=50.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~ 201 (440)
=+++|+.++|+||+|+||||| ++++.+...+..|.+++++....+ ..+.+.+++.+++..++
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf 404 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTL-ARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF 404 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccc
Confidence 478999999999999999999 999999999999999998865322 12456678777765543
No 378
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.4e-07 Score=99.32 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=51.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
-+++|+.++|+|++|+||||| ++++.+..++..|.+.+++-+..+. .+.+++.+..++-+++
T Consensus 343 t~~~g~~talvG~SGaGKSTL-l~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf 407 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTL-LNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF 407 (559)
T ss_pred EecCCcEEEEECCCCCCHHHH-HHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccc
Confidence 479999999999999999999 9999999999999999997654333 4788888877665544
No 379
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.62 E-value=1.3e-07 Score=104.59 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i 200 (440)
=+++|+.++|+|++||||||| ++++.+...+..|.+++++.+..+- .+.+.+++.+++..+
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTL-lklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l 550 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTL-LKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL 550 (694)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhh
Confidence 478999999999999999999 9999999999999999998754322 356778887765443
No 380
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.62 E-value=1e-07 Score=103.57 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i 200 (440)
=+++|+.++|+|++|+||||| ++++.+...+..|.+++++.+..+ ..+.+.+++.+++..+
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTL-l~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 420 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTL-INLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420 (588)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc
Confidence 478999999999999999999 899999999999999999875432 2356778887766544
No 381
>PLN03140 ABC transporter G family member; Provisional
Probab=98.61 E-value=7.9e-08 Score=113.53 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=98.4
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIAD 214 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~ 214 (440)
|-+++|++++|.|||||||||| |+++++...+. .|.+++++....+....+.+++..++..+....++.|.+....
T Consensus 186 ~~i~~Ge~~~llGpnGSGKSTL-Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a 264 (1470)
T PLN03140 186 GIIKPSRMTLLLGPPSSGKTTL-LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSA 264 (1470)
T ss_pred EEEeCCeEEEEEcCCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHH
Confidence 6689999999999999999999 99999998776 7888888765432222345677776655555556666554332
Q ss_pred HHHh-------------cC---------C----------------------cceEEEecccc-cC---Cchhhcccchhh
Q 013567 215 RMCR-------------SG---------A----------------------IDLICVDSVSA-LT---PRAEIEGEIGMQ 246 (440)
Q Consensus 215 ~l~~-------------~~---------~----------------------~~lvVIDsl~~-l~---~~~el~~~~g~~ 246 (440)
.+.. .. . .+.+-++.... .. ....+++ |++
T Consensus 265 ~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSG--Ger 342 (1470)
T PLN03140 265 RCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG--GQK 342 (1470)
T ss_pred HhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCc--ccc
Confidence 2100 00 0 00111111100 00 0123444 677
Q ss_pred hHHHHHHHH---------------------HHHHHHHHHHHHhcCCEEEEEeccc-cccccccCCceeecccceeee
Q 013567 247 QIGLQARLM---------------------SQALRKMSGNASKAGCTLIFLNQIR-YKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 247 q~~~~ar~l---------------------~~~l~~L~~lak~~~~tVI~inhl~-~~ig~~~~~~~~~~gG~~l~~ 301 (440)
++...++++ .++++.|+.++++.+.|||+++|.. ..+-.+|++......|+.+.+
T Consensus 343 kRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~ 419 (1470)
T PLN03140 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ 419 (1470)
T ss_pred eeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEe
Confidence 777777665 3556666677777799999999864 455555666556666655443
No 382
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.60 E-value=1.7e-07 Score=103.96 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i 200 (440)
=+++|+.++|+|++||||||| ++++.+...+..|.+++++.+..+ . .+.+.+|+.+++.++
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTL-lklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTL-AKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee
Confidence 479999999999999999999 899999999999999999875322 2 366778888776544
No 383
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=2.1e-07 Score=100.02 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=49.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l 198 (440)
-|+||++++++||+|+||||+ ..++.++..|.+|.+.+|+.+..+-. +.+.+|..-++.
T Consensus 490 ti~pGe~vALVGPSGsGKSTi-asLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTI-ASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHH-HHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 589999999999999999999 89999999999999999998754432 556777765443
No 384
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.59 E-value=1.6e-07 Score=89.01 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEE-EcCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAML-VDAE 180 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~-id~E 180 (440)
-|++|++++|.|||||||||| ++++++...+..|.++ ++..
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~~~sG~i~~~~~~ 50 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTL-TRLLCGLDAPDEGDFIGLRGD 50 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCccCCCCCEEEecCc
Confidence 378999999999999999999 9999999888888776 6553
No 385
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.57 E-value=1.6e-07 Score=101.34 Aligned_cols=39 Identities=33% Similarity=0.626 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
-+.+|++++|.|||||||||| ++++.+...+..|.+++.
T Consensus 346 ~i~~Ge~~~l~G~NGsGKSTL-l~~i~G~~~p~~G~i~~~ 384 (556)
T PRK11819 346 SLPPGGIVGIIGPNGAGKSTL-FKMITGQEQPDSGTIKIG 384 (556)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEEC
Confidence 478999999999999999999 999999998888888874
No 386
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.57 E-value=9.7e-08 Score=105.06 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
-+++|++++|.||||+||||| ++++.+...+.+|.++++
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTL-l~lL~Gl~~~~~G~i~~~ 512 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSL-FRILGELWPVYGGRLTKP 512 (659)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEeec
Confidence 478999999999999999999 999999988877877765
No 387
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.57 E-value=5.5e-07 Score=85.86 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=43.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC----CChhhhhhhcccc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA----FDPSYSKALGVDV 195 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~----~~~~~a~~lGv~~ 195 (440)
-+++|+-..|+|||||||||| ++++.+..-+..+.+.+-++.. ....+.+++|+..
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTL-L~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS 112 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTL-LSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVS 112 (257)
T ss_pred eecCCCcEEEECCCCCCHHHH-HHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccC
Confidence 479999999999999999999 9999998877677666655532 1145677788764
No 388
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.57 E-value=1e-07 Score=94.20 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=36.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
=+++|++++|+|+||+||||| ++++.+...+..|.+++++
T Consensus 59 ~i~~Ge~~~liG~NGsGKSTL-l~~I~Gl~~p~~G~I~i~g 98 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSL-LMLILGELEPSEGKIKHSG 98 (282)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECC
Confidence 478999999999999999999 9999999988888777765
No 389
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.2e-07 Score=82.33 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP 185 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~ 185 (440)
|.+|+++.|.||||+||||| |++++++.++..|-+|+.++.....
T Consensus 25 l~~Ge~~~i~G~NG~GKTtL-LRilaGLl~p~~G~v~~~~~~i~~~ 69 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTL-LRILAGLLRPDAGEVYWQGEPIQNV 69 (209)
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHHcccCCCCCeEEecCCCCccc
Confidence 57899999999999999999 9999999999999999998875543
No 390
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.57 E-value=1.6e-07 Score=101.40 Aligned_cols=39 Identities=31% Similarity=0.606 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
-+++|++++|.|||||||||| ++++.+...+..|.++++
T Consensus 344 ~i~~Ge~~~l~G~NGsGKSTL-l~~l~G~~~p~~G~i~~~ 382 (552)
T TIGR03719 344 KLPPGGIVGVIGPNGAGKSTL-FRMITGQEQPDSGTIKIG 382 (552)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCeEEEEC
Confidence 478999999999999999999 999999988888888874
No 391
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.56 E-value=2.1e-07 Score=100.50 Aligned_cols=61 Identities=21% Similarity=0.400 Sum_probs=50.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i 200 (440)
=+++|+.++|.|++|+||||| ++++.+...+..|.+++++.+..+ ..+.+.+++.+++.++
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTL-l~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 417 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTL-VNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL 417 (571)
T ss_pred EecCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc
Confidence 478999999999999999999 999999999999999999865322 2356678887765544
No 392
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.3e-07 Score=103.64 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=37.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
-|.+|++++|+|||||||||| ++++++...++.|.++++..
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTL-LkiL~G~~~pd~G~I~~~~~ 63 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTL-LALLKNEISADGGSYTFPGN 63 (638)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEecCC
Confidence 578999999999999999999 99999998899999888764
No 393
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.56 E-value=4.3e-07 Score=80.61 Aligned_cols=63 Identities=21% Similarity=0.390 Sum_probs=45.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCCCCC-hhhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEHAFD-PSYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~~~~-~~~a~~lGv~~~~l~i~~ 202 (440)
-|.+|+|+.|.||+||||||| +.++.+..... .|.++++...... +...+.+|+-+++-++++
T Consensus 24 Tia~GeivtlMGPSGcGKSTL-ls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFp 90 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTL-LSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFP 90 (213)
T ss_pred EecCCcEEEEECCCCccHHHH-HHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccc
Confidence 477999999999999999999 99998887643 4667777654322 224567888775544433
No 394
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=2.2e-07 Score=105.24 Aligned_cols=158 Identities=23% Similarity=0.297 Sum_probs=94.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhccccccee-----------ecCCC-
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENLI-----------VCQPD- 204 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l~-----------i~~~~- 204 (440)
+|+|+.++|+|++||||||+ ++++.+...|..|.+++|+++..+.. +..++|+..+... +-.++
T Consensus 376 i~~G~~valVG~SGsGKST~-i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~da 454 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTL-IQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDA 454 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHH-HHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcc
Confidence 79999999999999999999 99999999999999999999765442 5667888776533 22222
Q ss_pred CHHHHHHHHHH-----HHhc--CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567 205 NGEMALEIADR-----MCRS--GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 205 ~~ee~l~~i~~-----l~~~--~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
+.+++.+..+. .+.. .+.+-.+-+. ...++| |++|+...||++ .+
T Consensus 455 t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~------g~qLSG--GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~ 526 (1228)
T KOG0055|consen 455 TREEIEEAAKAANAHDFILKLPDGYDTLVGER------GVQLSG--GQKQRIAIARALVRNPKILLLDEATSALDAESER 526 (1228)
T ss_pred cHHHHHHHHHHccHHHHHHhhHHhhcccccCC------CCCCCh--HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHH
Confidence 23333222211 0100 0111111111 122344 677777777766 22
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEE
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLE 308 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~ 308 (440)
...+....+.+ |.|.|+|+|-.+.+.. .+.......|+.++...+..|.
T Consensus 527 ~Vq~ALd~~~~-grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 527 VVQEALDKASK-GRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred HHHHHHHHhhc-CCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHH
Confidence 33343444444 5577778887665543 2333455567776666554433
No 395
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.56 E-value=2.3e-07 Score=100.83 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=50.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~ 201 (440)
=+++|+.++|+||+|+||||| ++++.+...+..|.+++++.+..+ ..+.+.+++.+++..++
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 421 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTL-INLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF 421 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccC
Confidence 478999999999999999999 999999999999999999875332 23556778877665443
No 396
>PLN03140 ABC transporter G family member; Provisional
Probab=98.55 E-value=3.5e-07 Score=108.13 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=95.7
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-|+.+ .+-+++|++++|.|||||||||| ++++++.... ..|.+++++.......+.+.+|+..++..+.+..++.|
T Consensus 895 iL~~v-s~~i~~Gel~aL~G~sGaGKTTL-L~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E 972 (1470)
T PLN03140 895 LLREV-TGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE 972 (1470)
T ss_pred EeeCc-EEEEECCeEEEEECCCCCCHHHH-HHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHH
Confidence 34443 37899999999999999999999 9999998653 35778888765433334556788777655555556665
Q ss_pred HHHHHHHHHhcC-------------CcceEEEecccccCC----chhhcccchhhhHHHHHHHH----------------
Q 013567 209 ALEIADRMCRSG-------------AIDLICVDSVSALTP----RAEIEGEIGMQQIGLQARLM---------------- 255 (440)
Q Consensus 209 ~l~~i~~l~~~~-------------~~~lvVIDsl~~l~~----~~el~~~~g~~q~~~~ar~l---------------- 255 (440)
.+.....+.... -++.+-++....... ...+++ |++++...++++
T Consensus 973 ~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg--GerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 973 SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST--EQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 544322110000 001111222111110 023444 777777777766
Q ss_pred -----HHHHHHHHHHHHhcCCEEEEEecccc-ccccccCCceeec-cccee
Q 013567 256 -----SQALRKMSGNASKAGCTLIFLNQIRY-KIGVYYGNPEVTS-GGIAL 299 (440)
Q Consensus 256 -----~~~l~~L~~lak~~~~tVI~inhl~~-~ig~~~~~~~~~~-gG~~l 299 (440)
..+++.|++++ +.|.|||+++|..+ .+-..++...... ||+.+
T Consensus 1051 D~~~a~~v~~~L~~l~-~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred CHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence 23444445544 45899999999876 3333444444444 45544
No 397
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.55 E-value=1.6e-07 Score=110.95 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=100.7
Q ss_pred HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh----hcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCC
Q 013567 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ----KLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDN 205 (440)
Q Consensus 132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~----~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~ 205 (440)
|+.+ .+-+++|++++|.|||||||||| ++++++.. .+..|.+++++....+ ..+.+.+++..++..+.+..+
T Consensus 77 L~~v-s~~i~~Ge~~aIlG~nGsGKSTL-Lk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 77 LKPM-DGLIKPGELTVVLGRPGSGCSTL-LKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeCC-EEEEECCEEEEEECCCCCCHHHH-HHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 5553 37889999999999999999999 99999875 3467889998865322 123344777777655555566
Q ss_pred HHHHHHHHHHHHh--------------cC----CcceEEEecccccC----CchhhcccchhhhHHHHHHHH--------
Q 013567 206 GEMALEIADRMCR--------------SG----AIDLICVDSVSALT----PRAEIEGEIGMQQIGLQARLM-------- 255 (440)
Q Consensus 206 ~ee~l~~i~~l~~--------------~~----~~~lvVIDsl~~l~----~~~el~~~~g~~q~~~~ar~l-------- 255 (440)
+.|.+.....+.. +. -.+.+-++....-. ....+++ |++++...++++
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSG--GerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSG--GERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCc--ccchHHHHHHHHHhCCCEEE
Confidence 6665544322100 00 00111122111100 0134555 888888888876
Q ss_pred -------------HHHHHHHHHHHHhcCCEEEEEeccc-cccccccCCceeeccccee
Q 013567 256 -------------SQALRKMSGNASKAGCTLIFLNQIR-YKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 256 -------------~~~l~~L~~lak~~~~tVI~inhl~-~~ig~~~~~~~~~~gG~~l 299 (440)
..+++.|+.++++.|.|||+++|.. ..+-..+++......|+.+
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv 290 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence 3456666666666799999999874 4454445554455555543
No 398
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.55 E-value=2.9e-07 Score=99.63 Aligned_cols=62 Identities=24% Similarity=0.323 Sum_probs=50.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~ 201 (440)
=+++|+.++|+||+||||||| ++++.+...+..|.+++++.+..+ ..+.+.+++.+++..++
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTL-l~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTL-LSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 478999999999999999999 999999999999999998875332 13556678877665544
No 399
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.8e-07 Score=102.58 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
-|.+|++++|+|||||||||| ++++.+...+..|.++++
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTL-lk~l~G~~~p~~G~i~~~ 372 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTL-IKLLAGELAPVSGEIGLA 372 (638)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCeEEEC
Confidence 578999999999999999999 999999998888888775
No 400
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.54 E-value=3.9e-07 Score=98.57 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=49.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i 200 (440)
=+++|+.++|.|++|+||||| ++++.+...+..|.+++++.+..+ ..+.+.+++.+++.++
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTL-lklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l 425 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTL-FQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL 425 (576)
T ss_pred EecCCCEEEEECCCCCCHHHH-HHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc
Confidence 478999999999999999999 999999999999999999865322 2356678887766544
No 401
>PRK13409 putative ATPase RIL; Provisional
Probab=98.53 E-value=1.6e-07 Score=102.02 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEE
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAML 176 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~ 176 (440)
+++|++++|.||||+||||| ++++++..+++.|.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTL-lkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTA-VKILSGELIPNLGDYE 131 (590)
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHHhCCccCCCcccc
Confidence 67999999999999999999 9999999999888886
No 402
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.53 E-value=3.1e-07 Score=108.83 Aligned_cols=64 Identities=16% Similarity=0.301 Sum_probs=50.5
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC-CCCC--Ch-hhhhhhcccccceeecC
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA-EHAF--DP-SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~-E~~~--~~-~~a~~lGv~~~~l~i~~ 202 (440)
=-+++|++++|+||+||||||| ++++.++..+..|.++++. .... +. .+.+.+|+.+++..++.
T Consensus 406 l~i~~Ge~vaIvG~SGsGKSTL-l~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~ 473 (1466)
T PTZ00265 406 FTLTEGKTYAFVGESGCGKSTI-LKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS 473 (1466)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh
Confidence 3589999999999999999999 9999999999999999953 3221 22 24567888887765553
No 403
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.53 E-value=3.7e-07 Score=99.41 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=97.7
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHH---
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL---GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALE--- 211 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~---~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~--- 211 (440)
|=+.+|++++|.||+||||||| |.++++-... -.|.+.++++......+.+..|+..|+-.+.+..+++|.+.
T Consensus 51 g~~~~Gel~AimG~SGsGKtTL-L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A 129 (613)
T KOG0061|consen 51 GTAKPGELLAIMGPSGSGKTTL-LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSA 129 (613)
T ss_pred EEEecCeEEEEECCCCCCHHHH-HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHH
Confidence 7789999999999999999999 8888887653 47899999976666666777788777655555555554433
Q ss_pred ---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567 212 ---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------- 255 (440)
Q Consensus 212 ---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------- 255 (440)
+++.++.+-+.. -+-|++-.-.....+++ |++.+...+.++
T Consensus 130 ~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSG--GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA 206 (613)
T KOG0061|consen 130 LLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSG--GERKRVSIALELLTDPSILFLDEPTSGLDSFSA 206 (613)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCcccc--chhhHHHHHHHHHcCCCEEEecCCCCCcchhhH
Confidence 333332221111 00111110000011222 444444444443
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeccc-cccccccCCceeecccceeee
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIR-YKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~-~~ig~~~~~~~~~~gG~~l~~ 301 (440)
.+.++-|+++|++ |.|||++-|.. ..+=.+|++....+.|..+-+
T Consensus 207 ~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~ 252 (613)
T KOG0061|consen 207 LQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYS 252 (613)
T ss_pred HHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe
Confidence 3567778888988 99999988875 344455666555555544433
No 404
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.52 E-value=5.7e-07 Score=98.83 Aligned_cols=150 Identities=16% Similarity=0.205 Sum_probs=90.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hh----hhhhcccccceeecCCCCHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SY----SKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~----a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
+++|+++.|.|+||+||||| ++++.+...+..|.++++++..... .+ .+.+++.+++..+++..+..+.+..
T Consensus 31 i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 109 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTL-MNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV 109 (648)
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHH
Confidence 67999999999999999999 9999999999999999998764331 11 3457887777665554443332221
Q ss_pred ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH
Q 013567 213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
+..+++ .+-++...... ...+++ |++|+...+|++ .+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~-----~lgl~~~~~~~-~~~LS~--Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~ 181 (648)
T PRK10535 110 PAVYAGLERKQRLLRAQELLQ-----RLGLEDRVEYQ-PSQLSG--GQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181 (648)
T ss_pred HHHHcCCCHHHHHHHHHHHHH-----HCCChhhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 111111 11112211111 123333 666666666665 23
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
.+..+...+++.+.|+|+++|..+.+. .++.......|+..
T Consensus 182 ~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~ 222 (648)
T PRK10535 182 EVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIV 222 (648)
T ss_pred HHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEE
Confidence 333333334456899999999987553 34433344444444
No 405
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.51 E-value=2.3e-06 Score=72.72 Aligned_cols=125 Identities=26% Similarity=0.336 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGA 221 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~ 221 (440)
++..+.|+||||+||||++..++..+......+++++.+........... ... ................+....+...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-LII-VGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-hhh-hhccCCCCCHHHHHHHHHHHHHhcC
Confidence 36789999999999999977776666655557999998876554433221 000 0000111222223333333344445
Q ss_pred cceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567 222 IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI 279 (440)
Q Consensus 222 ~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl 279 (440)
+.++++|.+..+....... .. ................+..+|++++.
T Consensus 79 ~~viiiDei~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 79 PDVLILDEITSLLDAEQEA---------LL--LLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCEEEEECCcccCCHHHHH---------HH--HhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 7999999999887421110 00 00000223344445677888888875
No 406
>PF13479 AAA_24: AAA domain
Probab=98.50 E-value=9.9e-07 Score=83.63 Aligned_cols=125 Identities=25% Similarity=0.262 Sum_probs=75.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHh-cC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCR-SG 220 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~-~~ 220 (440)
+-.+.|+|+||+||||||..+ .+++||+.|...... ... +....+..+.+++.+.+..+.. ..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~~~-------~~~~i~i~s~~~~~~~~~~l~~~~~ 67 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKFLD-------DGDVIPITSWEDFLEALDELEEDEA 67 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhhhc-------CCCeeCcCCHHHHHHHHHHHHhccC
Confidence 346899999999999997665 689999999874432 111 1222333477777776665432 35
Q ss_pred CcceEEEecccccCCc--hhhc-------ccchhhhHHHHHHHHHHHHHHHHH-HHHhcCCEEEEEeccccc
Q 013567 221 AIDLICVDSVSALTPR--AEIE-------GEIGMQQIGLQARLMSQALRKMSG-NASKAGCTLIFLNQIRYK 282 (440)
Q Consensus 221 ~~~lvVIDsl~~l~~~--~el~-------~~~g~~q~~~~ar~l~~~l~~L~~-lak~~~~tVI~inhl~~~ 282 (440)
..+.||||++..+... .... ...+......-...+.+.+..+.. +.+..+..||+|.|....
T Consensus 68 ~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~ 139 (213)
T PF13479_consen 68 DYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAHAKEE 139 (213)
T ss_pred CCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEE
Confidence 7899999999886421 1111 000110001112233444444444 455689999999998754
No 407
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.50 E-value=4e-07 Score=99.81 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=37.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
-|++|++++|+|||||||||| ++++++...++.|.++++..
T Consensus 25 ~i~~Ge~v~LvG~NGsGKSTL-LriiaG~~~p~~G~I~~~~~ 65 (635)
T PRK11147 25 HIEDNERVCLVGRNGAGKSTL-MKILNGEVLLDDGRIIYEQD 65 (635)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCeEEEeCCC
Confidence 578999999999999999999 99999999998898888753
No 408
>PLN03130 ABC transporter C family member; Provisional
Probab=98.50 E-value=4.3e-07 Score=108.67 Aligned_cols=159 Identities=18% Similarity=0.227 Sum_probs=96.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC-----------CC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ-----------PD 204 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~-----------~~ 204 (440)
-|++|+.++|+|++||||||| ++++.++..+..|.++||+.+..+- .+++++++.+++..+++ ..
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTL-l~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~ 1339 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSM-LNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEH 1339 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCC
Confidence 589999999999999999999 9999999999999999999875433 36678898887655433 22
Q ss_pred CHHHHHHHHHHH-----HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHH-----------------HHHHHH
Q 013567 205 NGEMALEIADRM-----CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMS-----------------QALRKM 262 (440)
Q Consensus 205 ~~ee~l~~i~~l-----~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~-----------------~~l~~L 262 (440)
+.+++.+.++.. +.+..- -+|+.-.-. ...+++ |++|+...||++- +.=..+
T Consensus 1340 tdeei~~Al~~a~l~~~I~~lp~---GLdt~Vge~-G~nLSg--GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I 1413 (1622)
T PLN03130 1340 NDADLWESLERAHLKDVIRRNSL---GLDAEVSEA-GENFSV--GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413 (1622)
T ss_pred CHHHHHHHHHHcCcHHHHHhCcc---ccCccccCC-CCCCCH--HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 333443333321 111000 011111000 122333 7777777777761 111112
Q ss_pred HHHHHh--cCCEEEEEeccccccccccCCceeecccceeeeeceE
Q 013567 263 SGNASK--AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASV 305 (440)
Q Consensus 263 ~~lak~--~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~ 305 (440)
.+.+++ .++|||+|+|-.+.+.. ++...+...|+..++..+.
T Consensus 1414 q~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~ 1457 (1622)
T PLN03130 1414 QKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPE 1457 (1622)
T ss_pred HHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHH
Confidence 222222 47999999998765542 4555556667666655443
No 409
>PLN03232 ABC transporter C family member; Provisional
Probab=98.48 E-value=5.8e-07 Score=107.12 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=52.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
-+++|+.++|+|++||||||| ++++.++..+..|.++||+.+..+- .+.+++++.+++..++
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL-~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF 1322 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSM-LNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeee
Confidence 478999999999999999999 9999999999999999999765432 3677889888776554
No 410
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=6.5e-07 Score=93.55 Aligned_cols=132 Identities=23% Similarity=0.331 Sum_probs=87.0
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhcccccceeecCC-----------
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENLIVCQP----------- 203 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l~i~~~----------- 203 (440)
.-||+|+-++|+|+|||||||+ ++++..... ..|.++||+.+...-. +++.+|+.||+-.++..
T Consensus 373 f~I~kGekVaIvG~nGsGKSTi-lr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~ 450 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTI-LRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP 450 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHH-HHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC
Confidence 4589999999999999999999 999999998 7899999998754432 56778999976544322
Q ss_pred -CCHHHHHHHHHHHHhcCCcceEEEecccccC-------Cc--hhhcccchhhhHHHHHHHH------------------
Q 013567 204 -DNGEMALEIADRMCRSGAIDLICVDSVSALT-------PR--AEIEGEIGMQQIGLQARLM------------------ 255 (440)
Q Consensus 204 -~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~-------~~--~el~~~~g~~q~~~~ar~l------------------ 255 (440)
.+.+++++.+++. +. =|.+..+. .. ..++| |++|+...+|++
T Consensus 451 sas~eeV~e~~k~a----~~----hd~i~~l~~GY~T~VGerG~~LSG--GekQrvslaRa~lKda~Il~~DEaTS~LD~ 520 (591)
T KOG0057|consen 451 SASDEEVVEACKRA----GL----HDVISRLPDGYQTLVGERGLMLSG--GEKQRVSLARAFLKDAPILLLDEATSALDS 520 (591)
T ss_pred CcCHHHHHHHHHHc----Cc----HHHHHhccccchhhHhhccccccc--chHHHHHHHHHHhcCCCeEEecCcccccch
Confidence 2345565555432 11 12222221 10 12233 677777777765
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
.++++.+.. ...+.|+|+|-|..+-+
T Consensus 521 ~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll 549 (591)
T KOG0057|consen 521 ETEREILDMIMD--VMSGRTVIMIVHRLDLL 549 (591)
T ss_pred hhHHHHHHHHHH--hcCCCeEEEEEecchhH
Confidence 234444433 34688999999987644
No 411
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.46 E-value=4.9e-07 Score=107.89 Aligned_cols=62 Identities=13% Similarity=0.241 Sum_probs=52.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
-+++|+.++|+|++||||||| ++++.++..+..|.++||+.+..+- .+++++++.+++..++
T Consensus 1308 ~I~~GekiaIVGrTGsGKSTL-~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF 1372 (1522)
T TIGR00957 1308 TIHGGEKVGIVGRTGAGKSSL-TLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLF 1372 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCccc
Confidence 478999999999999999999 8999999999999999999875433 3677889888776554
No 412
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.46 E-value=3.9e-07 Score=107.75 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=56.2
Q ss_pred HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
|+.+ .+-+++|++++|.||||+||||| ++++++... +..|.+++++.... ..+.+.+|+.+++..+....++.+
T Consensus 779 L~~v-s~~i~~Ge~~aI~G~sGaGKSTL-L~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E 855 (1394)
T TIGR00956 779 LNNV-DGWVKPGTLTALMGASGAGKTTL-LNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRE 855 (1394)
T ss_pred eeCC-EEEEECCEEEEEECCCCCCHHHH-HHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeecccccCCCCCCHHH
Confidence 4443 27799999999999999999999 999999876 45688999987643 234566788776544444445555
Q ss_pred HHH
Q 013567 209 ALE 211 (440)
Q Consensus 209 ~l~ 211 (440)
.+.
T Consensus 856 ~L~ 858 (1394)
T TIGR00956 856 SLR 858 (1394)
T ss_pred HHH
Confidence 443
No 413
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.46 E-value=5.5e-07 Score=106.74 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=50.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------------------------------------------------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL------------------------------------------------ 170 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------------------------------------------------ 170 (440)
=+++|+.++|+||+||||||| ++++.++..+
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl-~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTV-MSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGE 1268 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 489999999999999999999 9999999887
Q ss_pred ------CCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 171 ------GGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 171 ------~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
..|.+++|+.+..+- .+.+.+++.+++.+++
T Consensus 1269 ~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF 1308 (1466)
T PTZ00265 1269 DSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF 1308 (1466)
T ss_pred ccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc
Confidence 588999998865432 3667789888765544
No 414
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.45 E-value=1.8e-06 Score=78.36 Aligned_cols=136 Identities=24% Similarity=0.225 Sum_probs=80.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC-CCCChh-------h----hhhhcccccce------eec
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE-HAFDPS-------Y----SKALGVDVENL------IVC 201 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E-~~~~~~-------~----a~~lGv~~~~l------~i~ 201 (440)
+.||++.+|+|.+||||||| |.++..-+.++.+.+-.... ..+... + .-.+|+.-+|. .+.
T Consensus 29 l~PGeVLgiVGESGSGKtTL-L~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VS 107 (258)
T COG4107 29 LYPGEVLGIVGESGSGKTTL-LKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVS 107 (258)
T ss_pred ecCCcEEEEEecCCCcHHhH-HHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeec
Confidence 67999999999999999999 89888888777665544433 222111 1 11245544332 121
Q ss_pred CCCC-HH-----------HHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567 202 QPDN-GE-----------MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM-------------- 255 (440)
Q Consensus 202 ~~~~-~e-----------e~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l-------------- 255 (440)
...+ .| ++...+..++++-.++.--||.....+ ++ |++|+-.++|-+
T Consensus 108 AG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtF-----SG--GMqQRLQiARnLVt~PrLvfMDEPTG 180 (258)
T COG4107 108 AGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTF-----SG--GMQQRLQIARNLVTRPRLVFMDEPTG 180 (258)
T ss_pred cCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCccccc-----ch--HHHHHHHHHHHhccCCceEEecCCCC
Confidence 1111 11 222233334444455555555543333 33 555555555543
Q ss_pred -------HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 256 -------SQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 256 -------~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
++.+.-|..+.++.+.++++++|.....
T Consensus 181 GLDVSVQARLLDllrgLv~~l~la~viVTHDl~Va 215 (258)
T COG4107 181 GLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA 215 (258)
T ss_pred CcchhhHHHHHHHHHHHHHhcCceEEEEechhHHH
Confidence 4556667778889999999999986543
No 415
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.44 E-value=5.3e-07 Score=90.92 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=81.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhcccccceeecCC----C---CH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENLIVCQP----D---NG-- 206 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l~i~~~----~---~~-- 206 (440)
-|.+|+++-|+|.|||||||| +.++.++.+|..|-+++|++...... |.+-+.-.+.++++++. . +.
T Consensus 345 ~ikrGelvFliG~NGsGKST~-~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~ 423 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTL-AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQL 423 (546)
T ss_pred EEecCcEEEEECCCCCcHHHH-HHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHH
Confidence 478999999999999999999 78999999999999999998654432 44444444444333221 0 11
Q ss_pred -HHH-----------------------------HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHH
Q 013567 207 -EMA-----------------------------LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMS 256 (440)
Q Consensus 207 -ee~-----------------------------l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~ 256 (440)
+.- +..+-.+++ .-+++|+|..++=-. . .-. +
T Consensus 424 i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQD------------P-aFR---R 485 (546)
T COG4615 424 IEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQD------------P-AFR---R 485 (546)
T ss_pred HHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCC------------h-HHH---H
Confidence 111 111122222 345788888765321 0 111 3
Q ss_pred HHHHHHHHHHHhcCCEEEEEecccc
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
.+-..+...+|+.|.||+.|+|+-.
T Consensus 486 ~FY~~lLp~LK~qGKTI~aIsHDd~ 510 (546)
T COG4615 486 EFYQVLLPLLKEQGKTIFAISHDDH 510 (546)
T ss_pred HHHHHHhHHHHHhCCeEEEEecCch
Confidence 4456678889999999999999854
No 416
>PLN03073 ABC transporter F family; Provisional
Probab=98.43 E-value=5e-07 Score=100.06 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-|++|++++|+|||||||||| ++++.+...+..|.++++.
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTL-Lk~L~Gll~p~~G~I~~~~ 570 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTI-LKLISGELQPSSGTVFRSA 570 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCceEEECC
Confidence 578999999999999999999 9999999988888777653
No 417
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1e-06 Score=92.07 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=49.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC---Chhhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF---DPSYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~---~~~~a~~lGv~~~~l~i 200 (440)
-+.+|+-+.|.|++||||||| +|++.+...++.|.+-+++.+.. ++.+.+.+++..++.++
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTl-lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl 423 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTL-LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423 (573)
T ss_pred eecCCCeEEEECCCCCCHHHH-HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence 578999999999999999999 99999999999999999876543 23367777777654443
No 418
>PTZ00243 ABC transporter; Provisional
Probab=98.42 E-value=8.6e-07 Score=105.86 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=53.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~ 202 (440)
=|++|+.++|+|++||||||| ++++.++..+..|.++||+.+..+- .+.+.+++.+++..+++
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTL-l~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTL-LLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 378999999999999999999 9999999999999999999865432 36778899887766543
No 419
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.41 E-value=1.1e-06 Score=79.51 Aligned_cols=135 Identities=23% Similarity=0.231 Sum_probs=90.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-----------hhhhhhcccccceeecCCCC--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-----------SYSKALGVDVENLIVCQPDN-- 205 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-----------~~a~~lGv~~~~l~i~~~~~-- 205 (440)
-+..|+.+.+.||+|+||||| |+++++...+++|.+++-.++..-. .+.+.+|+..+-+.+++..+
T Consensus 33 sV~aGECvvL~G~SG~GKStl-lr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL 111 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTL-LRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL 111 (235)
T ss_pred EecCccEEEeeCCCCCcHHHH-HHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH
Confidence 467899999999999999999 9999999999999999977654322 13456788776665544332
Q ss_pred -------------HHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567 206 -------------GEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 206 -------------~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
.+.....+..++.+-++ =.-+-.+.| ..++| |++|+.+++|-+
T Consensus 112 dVvaePll~~gv~~~~a~~~a~~Ll~rLnl----perLW~LaP-aTFSG--GEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 112 DVVAEPLLARGVPREVARAKAADLLTRLNL----PERLWSLAP-ATFSG--GEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCC----CHHHhcCCC-cccCC--chheehhhhhhhhccCceEEecCCccccc
Confidence 22233334444332221 112223332 55555 666777776654
Q ss_pred ---HHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 256 ---SQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 256 ---~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
++..-.|.+-+|..|+++|-|=|+.+
T Consensus 185 a~Nr~vVveli~e~Ka~GaAlvGIFHDee 213 (235)
T COG4778 185 ATNRAVVVELIREAKARGAALVGIFHDEE 213 (235)
T ss_pred ccchHHHHHHHHHHHhcCceEEEeeccHH
Confidence 45677788889999999999999865
No 420
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.40 E-value=1e-06 Score=80.67 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhccc----ccceeecC-CCCHHHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVD----VENLIVCQ-PDNGEMALEIADRMC 217 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~----~~~l~i~~-~~~~ee~l~~i~~l~ 217 (440)
+.++.|.|+|||||||+|.+++... +.+++|+.+....+....+++... ++.+.... +....++ +....
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~---i~~~~ 74 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAEL---LRADA 74 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHH---HHhhc
Confidence 3578999999999999999887653 456899998777776654443211 22222221 2232222 22211
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~ 280 (440)
.+.++|+||+++.+.. ..+..+. ...+...+..+...+++.++|+|+|+...
T Consensus 75 --~~~~~VlID~Lt~~~~-n~l~~~~--------~~~~~~~l~~li~~L~~~~~tvVlVs~Ev 126 (170)
T PRK05800 75 --APGRCVLVDCLTTWVT-NLLFEEG--------EEAIAAEIDALLAALQQLPAKIILVTNEV 126 (170)
T ss_pred --CCCCEEEehhHHHHHH-HHhcccc--------hHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 2356899999999863 2221100 01123445666777778898888887543
No 421
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=1.3e-06 Score=75.31 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEMAL 210 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee~l 210 (440)
+.+.++.|+|++|+|||+++.+++...... ...++|++........ ++..++..... ..+..++.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~ 76 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR 76 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence 456789999999999999988888776543 5678888765544332 34444444333 45677777
Q ss_pred HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567 211 EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI 279 (440)
Q Consensus 211 ~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl 279 (440)
+.+.+.+......+++||.+..+.. ...+..|+.++.+.+++||++.+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~--------------------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFS--------------------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHT--------------------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCC--------------------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 7777777777778999999877520 123444455566889999998775
No 422
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.38 E-value=2.4e-07 Score=80.78 Aligned_cols=68 Identities=25% Similarity=0.379 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
+++|++++|+|+||+||||| ++++.+...+..|.++++...... ..+.+.+++.+++..+....++.+
T Consensus 8 i~~g~~~~i~G~nGsGKStL-l~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTL-LKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EETTSEEEEEESTTSSHHHH-HHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred EcCCCEEEEEccCCCccccc-eeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67999999999999999999 999999999999999999876665 235667788777766666665544
No 423
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.7e-06 Score=80.43 Aligned_cols=47 Identities=30% Similarity=0.491 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCChh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDPS 186 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~~ 186 (440)
-+++|++++|.|||||||||| ..++.+.- +...|-+.|++++..+..
T Consensus 26 ~v~~GEvhaiMGPNGsGKSTL-a~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 26 TVKEGEVHAIMGPNGSGKSTL-AYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eEcCCcEEEEECCCCCCHHHH-HHHHhCCCCceEecceEEECCcccccCC
Confidence 368999999999999999999 55666654 467899999999876653
No 424
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=3.4e-06 Score=95.78 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=51.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhccccccee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENLI 199 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l~ 199 (440)
-+++|+.++|+||+||||||. .+++.+...+..|.++||+.+..+.. +++++|+..++..
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTv-I~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~ 1074 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTV-ISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHH-HHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch
Confidence 478999999999999999999 99999999999999999988765543 5677887765443
No 425
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.32 E-value=1.6e-06 Score=103.31 Aligned_cols=62 Identities=24% Similarity=0.383 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~ 202 (440)
=|++|+.++|+|++||||||| ++++.++.. ..|.++||+.+..+- .+.+++++.+++..+++
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTL-l~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~ 1305 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTL-LSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS 1305 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCc
Confidence 478999999999999999999 888888876 689999999875432 36678888887766553
No 426
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.31 E-value=5.7e-06 Score=77.64 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=47.2
Q ss_pred CcHHHHHHhcC---CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh
Q 013567 128 GCLTLDLALGG---GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP 185 (440)
Q Consensus 128 Gi~~LD~~LgG---Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~ 185 (440)
|.+.=+.+|.| -|+.|+++.|.|.||+||||| ++.+++...+++|-++|++.+....
T Consensus 14 g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTl-ln~iaG~l~~t~G~I~Idg~dVtk~ 73 (263)
T COG1101 14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTL-LNAIAGDLKPTSGQILIDGVDVTKK 73 (263)
T ss_pred CChhHHHHHhcCceeecCCceEEEEcCCCccHHHH-HHHhhCccccCCceEEECceecccC
Confidence 44444455532 589999999999999999999 9999999999999999999876544
No 427
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.30 E-value=2.3e-06 Score=88.29 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=56.3
Q ss_pred ccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccc
Q 013567 126 PSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVEN 197 (440)
Q Consensus 126 ~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~ 197 (440)
.+|-|-|..+- =-+++|+.++++||+|+||||+ ++++.+......|++.||+.+...- .+.+.+|+.+++
T Consensus 548 ~p~k~vl~dis-F~v~pGktvAlVG~SGaGKSTi-mRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQD 620 (790)
T KOG0056|consen 548 DPGKPVLSDIS-FTVQPGKTVALVGPSGAGKSTI-MRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQD 620 (790)
T ss_pred CCCCceeecce-EEecCCcEEEEECCCCCchhHH-HHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence 35555554432 3478999999999999999999 9999999999999999999876543 267789998864
No 428
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.30 E-value=6.5e-06 Score=75.44 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=44.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhcccc
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDV 195 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~ 195 (440)
+..|+..+|.|.|||||||| .++++++..|.+|-+.|+.+.-.... +++.+.+.+
T Consensus 36 L~~~QTlaiIG~NGSGKSTL-akMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiF 93 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTL-AKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIF 93 (267)
T ss_pred ecCCcEEEEEccCCCcHhHH-HHHHhcccCCCCceEEECCccccccchHhhhhheeeee
Confidence 56799999999999999999 78999999999999999988654333 455555444
No 429
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.28 E-value=7e-06 Score=77.07 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
..|+++.|+||||+||||| ++.+.+..
T Consensus 23 ~~g~~~~ltGpNg~GKSTl-lr~i~~~~ 49 (199)
T cd03283 23 EKKNGILITGSNMSGKSTF-LRTIGVNV 49 (199)
T ss_pred cCCcEEEEECCCCCChHHH-HHHHHHHH
Confidence 3479999999999999999 77776554
No 430
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.27 E-value=6e-06 Score=88.21 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=34.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-+.+|+-++|+|+||+||||| |+++++...+..|.+....
T Consensus 25 ~~~~G~riGLvG~NGaGKSTL-LkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTL-LKILAGELEPDSGEVTRPK 64 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHH-HHHHcCCCcCCCCeEeecC
Confidence 578999999999999999999 9999999887766655543
No 431
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.27 E-value=2e-06 Score=97.54 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=102.4
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMALEIA 213 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~l~~i 213 (440)
-.+++|++.++.|+||+||||+ ++++.+..++.+|.+++.+...... ...+.+|+-++.-.+.+..+..|.+...
T Consensus 586 ~~V~~gecfgLLG~NGAGKtT~-f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ 664 (885)
T KOG0059|consen 586 FAVPPGECFGLLGVNGAGKTTT-FKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFY 664 (885)
T ss_pred EEecCCceEEEecCCCCCchhh-HHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHH
Confidence 6899999999999999999999 9999999999999999976654321 2567899998876666666655543321
Q ss_pred H---------------HHHh-----------------------------cCCcceEEEecccccCCchhhcccchhhhHH
Q 013567 214 D---------------RMCR-----------------------------SGAIDLICVDSVSALTPRAEIEGEIGMQQIG 249 (440)
Q Consensus 214 ~---------------~l~~-----------------------------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~ 249 (440)
. .+++ -+.+.+|.+|..++-..+
T Consensus 665 arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP------------- 731 (885)
T KOG0059|consen 665 ARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDP------------- 731 (885)
T ss_pred HHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCH-------------
Confidence 1 1110 134678888875443320
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 250 LQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 250 ~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
. -++.+..+..-+++.+..||+++|.+++-..+|++......|+..-
T Consensus 732 -~---arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c 778 (885)
T KOG0059|consen 732 -K---ARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRC 778 (885)
T ss_pred -H---HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEE
Confidence 0 1345666666667766699999999998877787766665555543
No 432
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.25 E-value=9e-06 Score=76.19 Aligned_cols=28 Identities=39% Similarity=0.717 Sum_probs=24.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
+++| +++|+||||+||||| ++.+..+..
T Consensus 20 ~~~g-~~~i~G~nGsGKStl-l~al~~l~~ 47 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNI-IDAIRWVLG 47 (197)
T ss_pred cCCC-cEEEECCCCCCHHHH-HHHHHHHhc
Confidence 5678 999999999999999 888887764
No 433
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.24 E-value=2.4e-06 Score=86.59 Aligned_cols=166 Identities=18% Similarity=0.247 Sum_probs=107.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh----cCCcEEEEcCCCCCChh-------hhhhhcccccceee-cCCC-C
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK----LGGNAMLVDAEHAFDPS-------YSKALGVDVENLIV-CQPD-N 205 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~----~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i-~~~~-~ 205 (440)
-+.+|+.++|+|.+|||||..|+.++.-+.. ..++.+.|++++..... +-.++++.+++... ..|. +
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 3679999999999999999998777655443 34678888888754331 22345665554322 1111 1
Q ss_pred -HHHHHH---------------HHHHHHhcCCcceEEEecccc---cCCchhhcccchhhhHHHHHHHH-----------
Q 013567 206 -GEMALE---------------IADRMCRSGAIDLICVDSVSA---LTPRAEIEGEIGMQQIGLQARLM----------- 255 (440)
Q Consensus 206 -~ee~l~---------------~i~~l~~~~~~~lvVIDsl~~---l~~~~el~~~~g~~q~~~~ar~l----------- 255 (440)
..++.+ .+.+++ +.|-|..... -+| .+++| |++|+..++.++
T Consensus 112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL-----~~VgI~~p~~rl~~yP-HeLSG--GqRQRVMIAMALan~P~lLIADE 183 (534)
T COG4172 112 IGKQLAEVLRLHRGLSRAAARARALELL-----ELVGIPEPEKRLDAYP-HELSG--GQRQRVMIAMALANEPDLLIADE 183 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHH-----HHcCCCchhhhhhhCC-cccCc--chhhHHHHHHHHcCCCCeEeecC
Confidence 122222 222222 2233332211 122 56666 778887777766
Q ss_pred ----------HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeec
Q 013567 256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRST 312 (440)
Q Consensus 256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~ 312 (440)
.+++.-|+.+-++.|..++||+|+-..+..+.+...++.-|..++.....+++-.+.
T Consensus 184 PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~Pq 250 (534)
T COG4172 184 PTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQ 250 (534)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCC
Confidence 578888899999999999999999877766666677777888888877777766543
No 434
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=1.5e-05 Score=92.45 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=56.5
Q ss_pred HHHHHhcC---CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567 131 TLDLALGG---GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV 200 (440)
Q Consensus 131 ~LD~~LgG---Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i 200 (440)
.|+.+|-| =|++|+-++|+|+.||||||| .+.+.++..+.+|.+.||+-+..+- .+++++++.||+..+
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL-~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSL-ILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHH-HHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce
Confidence 45666632 378999999999999999999 8888899988999999999887654 367888888876554
No 435
>PLN03073 ABC transporter F family; Provisional
Probab=98.17 E-value=4.1e-06 Score=92.93 Aligned_cols=40 Identities=28% Similarity=0.315 Sum_probs=30.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh---hcC-CcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ---KLG-GNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~---~~~-~~vv~id~ 179 (440)
-|++|+.++|+|+||+||||| ++++++.. .+. +.+.|+.-
T Consensus 199 ~i~~Ge~~gLvG~NGsGKSTL-Lr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 199 TLAFGRHYGLVGRNGTGKTTF-LRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHcCCCCCCCCCCCEEEEEec
Confidence 489999999999999999999 99998642 233 34445543
No 436
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.16 E-value=1e-05 Score=84.58 Aligned_cols=109 Identities=25% Similarity=0.351 Sum_probs=71.6
Q ss_pred cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-h-hhhhccc-cc-ce
Q 013567 123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-Y-SKALGVD-VE-NL 198 (440)
Q Consensus 123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~-a~~lGv~-~~-~l 198 (440)
+.+.||+..+|.++ =+.+|+.+.|.|++|+||||| ++++.+...++.+++.+.+|...+-. + .+.++-. .. .+
T Consensus 140 ~~l~tg~~vid~l~--~i~~Gq~i~I~G~sG~GKStL-l~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v 216 (438)
T PRK07721 140 EPMEVGVRAIDSLL--TVGKGQRVGIFAGSGVGKSTL-MGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSI 216 (438)
T ss_pred cccccchhhhheee--eecCCcEEEEECCCCCCHHHH-HHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeE
Confidence 36889999999985 588999999999999999999 78898888888888888777654322 1 1112111 11 22
Q ss_pred eec-CC-C-CHH------HHHHHHHHHHhcCCcceEEEecccccC
Q 013567 199 IVC-QP-D-NGE------MALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 199 ~i~-~~-~-~~e------e~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
.+. .. . ... -.+.+++.+..++.--++++||++.+.
T Consensus 217 ~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A 261 (438)
T PRK07721 217 VVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVA 261 (438)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHH
Confidence 222 11 1 122 233445555455544577899998775
No 437
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.15 E-value=7.9e-06 Score=97.49 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=36.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-+++|++++|.||+||||||| ++++.+...+..|.+++++
T Consensus 448 ~i~~G~~~~I~G~~GsGKSTL-l~~l~G~~~~~~G~i~~~g 487 (1490)
T TIGR01271 448 KLEKGQLLAVAGSTGSGKSSL-LMMIMGELEPSEGKIKHSG 487 (1490)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECC
Confidence 478999999999999999999 9999999998888888875
No 438
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.13 E-value=1.5e-05 Score=74.80 Aligned_cols=25 Identities=40% Similarity=0.672 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
+|++++|+||||+||||| ++.+...
T Consensus 28 ~~~~~~l~G~Ng~GKStl-l~~i~~~ 52 (202)
T cd03243 28 SGRLLLITGPNMGGKSTY-LRSIGLA 52 (202)
T ss_pred CCeEEEEECCCCCccHHH-HHHHHHH
Confidence 359999999999999999 7777644
No 439
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.13 E-value=4.9e-05 Score=77.03 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhh----hcccccc--------ee-------ec
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKA----LGVDVEN--------LI-------VC 201 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~----lGv~~~~--------l~-------i~ 201 (440)
..|+...|-|.||+|||||++.++..+.. ...++|+++.-..+..+..- -.++..+ +. ..
T Consensus 8 ~~G~TLLIKG~PGTGKTtfaLelL~~l~~-~~~v~YISTRVd~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~~~~~vp~ 86 (484)
T PF07088_consen 8 EPGQTLLIKGEPGTGKTTFALELLNSLKD-HGNVMYISTRVDQDTVYEMYPWIEESIDPTNVLDATQDPFELPLDKDVPF 86 (484)
T ss_pred CCCcEEEEecCCCCCceeeehhhHHHHhc-cCCeEEEEeccCHHHHHHhhhhhccccChhhhhhhccchhhccccccCcc
Confidence 57999999999999999999999887764 56789999874433332111 1122111 11 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 202 QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 202 ~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
.....+.+.+.++++-......+|++||+-++.. .+..+.+.. ..+-.....|..+|++.++-+|++++-.+
T Consensus 87 ~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiie--yla~~~~~~------ed~e~l~~dLv~lard~g~~LIlVsEsa~ 158 (484)
T PF07088_consen 87 ERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIE--YLAEEHDEP------EDIETLTNDLVELARDMGINLILVSESAE 158 (484)
T ss_pred cccCHHHHHHHHHHhhhcccCcEEEEecHHHHHH--HhhhhhcCc------HHHHHHHHHHHHHHhhcCceEEEEEecCC
Confidence 1233556666666543345667999999766641 111111111 11445566777888999999999988765
Q ss_pred c
Q 013567 282 K 282 (440)
Q Consensus 282 ~ 282 (440)
.
T Consensus 159 ~ 159 (484)
T PF07088_consen 159 N 159 (484)
T ss_pred C
Confidence 3
No 440
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.13 E-value=4.1e-06 Score=77.48 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=43.5
Q ss_pred CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 128 GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 128 Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
|+..|+.+. =-+.+|++-.|.||||+||||+ +.++.+-.++..|.+||++.
T Consensus 17 GF~Aln~ls-~~v~~Gelr~lIGpNGAGKTT~-mD~ItGKtrp~~G~v~f~g~ 67 (249)
T COG4674 17 GFKALNDLS-FSVDPGELRVLIGPNGAGKTTL-MDVITGKTRPQEGEVLFDGD 67 (249)
T ss_pred ceeeeeeeE-EEecCCeEEEEECCCCCCceee-eeeecccCCCCcceEEEcCc
Confidence 555565543 4688999999999999999999 99999999999999999883
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.10 E-value=1.3e-05 Score=78.75 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=70.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----hhhhhhhcccccceeecCCCCHH--HHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----PSYSKALGVDVENLIVCQPDNGE--MALEIADRMC 217 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----~~~a~~lGv~~~~l~i~~~~~~e--e~l~~i~~l~ 217 (440)
..+.|.||||+||||| ++.+++...++.+.+++++..... ..++..++..+++-.....+..+ .-..-+..++
T Consensus 112 ~~~~i~g~~g~GKttl-~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i 190 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL-LRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLI 190 (270)
T ss_pred eEEEEEcCCCCCHHHH-HHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHH
Confidence 5789999999999999 999999999999999998876532 12444444444433221111111 1111234445
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
+...++++++|.+... ..+..+...++ .|.+||+++|...
T Consensus 191 ~~~~P~villDE~~~~-----------------------e~~~~l~~~~~-~G~~vI~ttH~~~ 230 (270)
T TIGR02858 191 RSMSPDVIVVDEIGRE-----------------------EDVEALLEALH-AGVSIIATAHGRD 230 (270)
T ss_pred HhCCCCEEEEeCCCcH-----------------------HHHHHHHHHHh-CCCEEEEEechhH
Confidence 5568999999985311 11122222223 5999999999743
No 442
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.09 E-value=1.3e-05 Score=95.78 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-+++|++++|+||+||||||| ++++.+...+..|.+++++
T Consensus 660 ~i~~G~~v~IvG~~GsGKSTL-l~~l~g~~~~~~G~i~~~g 699 (1522)
T TIGR00957 660 SIPEGALVAVVGQVGCGKSSL-LSALLAEMDKVEGHVHMKG 699 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCccCCcEEEECC
Confidence 478999999999999999999 9999999988888888875
No 443
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.08 E-value=3.3e-05 Score=73.62 Aligned_cols=124 Identities=13% Similarity=0.033 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh-cCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR-SGA 221 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~-~~~ 221 (440)
...+.|+|+||+||||+|.++ ..+.++++.+......... -.++ -+.+-.+.+.+.+.+.+..+-. ...
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~-------~~~~~~~~~d~~~~~l~g~-~~~~--v~~~d~~~~~~~~~d~l~~~~~~~~~ 81 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL-------PGKTLVLSFDMSSKVLIGD-ENVD--IADHDDMPPIQAMVEFYVMQNIQAVK 81 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc-------CCCCEEEeccccchhccCC-CCCc--eeecCCCCCHHHHHHHHHHHHhcccc
Confidence 467999999999999996554 2457778777643222100 0111 1112234456666666554321 246
Q ss_pred cceEEEecccccCCchhh-----cccc---hhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 222 IDLICVDSVSALTPRAEI-----EGEI---GMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 222 ~~lvVIDsl~~l~~~~el-----~~~~---g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
++.||||++..+.. .-+ .+.. ..+..+. +...+..+...+...+.+||+++|...
T Consensus 82 ydtVVIDsI~~l~~-~~~~~~~r~~k~~~~~~~~yg~----~~~~fl~~l~~L~~~g~nII~tAhe~~ 144 (220)
T TIGR01618 82 YDNIVIDNISALQN-LWLENIGRAAKNGQPELQHYQK----LDLWFLDLLTVLKESNKNIYATAWELT 144 (220)
T ss_pred CCEEEEecHHHHHH-HHHHHHhhhcCCCCcccccHHH----HHHHHHHHHHHHHhCCCcEEEEEeecc
Confidence 89999999988753 111 0000 1111112 233333344444568999999999864
No 444
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.06 E-value=2.7e-05 Score=72.96 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=19.6
Q ss_pred CC-CEEEEEcCCCCcHHHHHHHHHH
Q 013567 142 KG-RIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 142 ~G-~ii~I~G~~GsGKTTLaL~li~ 165 (440)
+| +++.|+||||+||||| ++.+.
T Consensus 26 ~~~~~~~ltG~Ng~GKStl-l~~i~ 49 (200)
T cd03280 26 ENKRVLVITGPNAGGKTVT-LKTLG 49 (200)
T ss_pred CCceEEEEECCCCCChHHH-HHHHH
Confidence 44 6899999999999999 66665
No 445
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.06 E-value=2.4e-05 Score=76.60 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
-||.|.++.|+|++|||||||+..++.
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l~ 43 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTLY 43 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHHH
Confidence 489999999999999999999766654
No 446
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.04 E-value=8.8e-06 Score=75.09 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=49.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
-+..+.-+.|+|++|+|||.||..++..+...+..|.|++..+-. ..+-.. ......++.+ ..+.
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~-----~~l~~~------~~~~~~~~~~---~~l~- 107 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL-----DELKQS------RSDGSYEELL---KRLK- 107 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH-----HHHHCC------HCCTTHCHHH---HHHH-
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee-----cccccc------ccccchhhhc---Cccc-
Confidence 345678899999999999999999999999989999999764322 221100 1112233333 3332
Q ss_pred cCCcceEEEecccccC
Q 013567 219 SGAIDLICVDSVSALT 234 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~ 234 (440)
.++++|||.+....
T Consensus 108 --~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 108 --RVDLLILDDLGYEP 121 (178)
T ss_dssp --TSSCEEEETCTSS-
T ss_pred --cccEecccccceee
Confidence 58999999997654
No 447
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.03 E-value=3.6e-05 Score=82.33 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=74.0
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc---------EEEEcCCCCC-Ch--h---hh--------------
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN---------AMLVDAEHAF-DP--S---YS-------------- 188 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~---------vv~id~E~~~-~~--~---~a-------------- 188 (440)
-.+.+|+-++|+||||+||||| ++++.+...+..| +.||+-+... .. . +.
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTL-lk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~ 421 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTL-LKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRA 421 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHH-HHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHH
Confidence 5789999999999999999999 9999877655433 4455433211 00 0 00
Q ss_pred --hhhccccccee-ecCCCCHHH-HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHH
Q 013567 189 --KALGVDVENLI-VCQPDNGEM-ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG 264 (440)
Q Consensus 189 --~~lGv~~~~l~-i~~~~~~ee-~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~ 264 (440)
.++++..+... -+...++-| ..-.+..+ --.++.++++|..+.... ...+..|..
T Consensus 422 ~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~l-l~~~pNvLiLDEPTNhLD--------------------i~s~~aLe~ 480 (530)
T COG0488 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKL-LLQPPNLLLLDEPTNHLD--------------------IESLEALEE 480 (530)
T ss_pred HHHHcCCChHHHhCchhhcCHhHHHHHHHHHH-hccCCCEEEEcCCCccCC--------------------HHHHHHHHH
Confidence 11111111110 011112222 21222222 234788999999887764 122344566
Q ss_pred HHHhcCCEEEEEecccccccc
Q 013567 265 NASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 265 lak~~~~tVI~inhl~~~ig~ 285 (440)
.+..+.-|||+|+|++.-+..
T Consensus 481 aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 481 ALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred HHHhCCCeEEEEeCCHHHHHh
Confidence 678889999999999986653
No 448
>PTZ00243 ABC transporter; Provisional
Probab=98.01 E-value=1.3e-05 Score=96.01 Aligned_cols=39 Identities=23% Similarity=0.566 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
=+++|++++|.||+||||||| ++++.+...+..|.+++.
T Consensus 682 ~i~~G~~~~IiG~nGsGKSTL-L~~i~G~~~~~~G~i~~~ 720 (1560)
T PTZ00243 682 SVPRGKLTVVLGATGSGKSTL-LQSLLSQFEISEGRVWAE 720 (1560)
T ss_pred EECCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEEC
Confidence 378999999999999999999 999999988888877763
No 449
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=6.3e-05 Score=76.87 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC----h--hhhhhhcccccceeecCCCCHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD----P--SYSKALGVDVENLIVCQPDNGEMALEIA 213 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~----~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i 213 (440)
+.+|+++.|+||+|+||||++.+++..+...+..+.+++...... + .+++.+++.+ ....+..++...+
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-----~~~~dp~dL~~al 277 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-----IVATSPAELEEAV 277 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-----EecCCHHHHHHHH
Confidence 567999999999999999999999888777778888988753211 1 1344444422 1234566666656
Q ss_pred HHHHhcCCcceEEEecccccC
Q 013567 214 DRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 214 ~~l~~~~~~~lvVIDsl~~l~ 234 (440)
..+....+.++|+||......
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCc
Confidence 555433568999999987654
No 450
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.97 E-value=4.4e-05 Score=73.35 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
|++++|+||||+||||| +.++..
T Consensus 23 ~~~~~i~GpNGsGKStl-l~ai~~ 45 (243)
T cd03272 23 PKHNVVVGRNGSGKSNF-FAAIRF 45 (243)
T ss_pred CCcEEEECCCCCCHHHH-HHHHHH
Confidence 57999999999999999 777763
No 451
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.94 E-value=2.8e-05 Score=80.05 Aligned_cols=125 Identities=22% Similarity=0.313 Sum_probs=74.3
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcE---E-------EEcCC--CCCChhhhhhhc--cccc--ceeec
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNA---M-------LVDAE--HAFDPSYSKALG--VDVE--NLIVC 201 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~v---v-------~id~E--~~~~~~~a~~lG--v~~~--~l~i~ 201 (440)
|.|..|+++++.||||.||||| .+++++..+++++. + ||..+ ++..+.+..... +... +..+.
T Consensus 362 G~i~~gEvigilGpNgiGKTTF-vk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~ 440 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTF-VKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIV 440 (591)
T ss_pred CeeecceEEEEECCCCcchHHH-HHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhc
Confidence 7899999999999999999999 89999999987663 1 22211 111111111111 1111 11233
Q ss_pred CCCCHHHHH---------------HHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013567 202 QPDNGEMAL---------------EIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNA 266 (440)
Q Consensus 202 ~~~~~ee~l---------------~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~la 266 (440)
.|...+.++ .++..+ ....++.++|..+++.. . .|+.. .++.+ .+++
T Consensus 441 ~pl~l~~i~e~~v~~LSGGELQRvaIaa~L--~reADlYllDEPSA~LD-v--------EqR~~----vakvI---RR~~ 502 (591)
T COG1245 441 KPLNLEDLLERPVDELSGGELQRVAIAAAL--SREADLYLLDEPSAYLD-V--------EQRII----VAKVI---RRFI 502 (591)
T ss_pred CccchHHHHhcccccCCchhHHHHHHHHHh--ccccCEEEecCchhhcc-H--------HHHHH----HHHHH---HHHH
Confidence 344443332 233333 44688999999888874 1 12222 23333 4456
Q ss_pred HhcCCEEEEEecccc
Q 013567 267 SKAGCTLIFLNQIRY 281 (440)
Q Consensus 267 k~~~~tVI~inhl~~ 281 (440)
...+.|.+++.|.--
T Consensus 503 e~~~kta~vVdHDi~ 517 (591)
T COG1245 503 ENNEKTALVVDHDIY 517 (591)
T ss_pred hhcCceEEEEeccee
Confidence 678899999999854
No 452
>PLN03130 ABC transporter C family member; Provisional
Probab=97.94 E-value=3.3e-05 Score=92.81 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC-cEEEE
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG-NAMLV 177 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~-~vv~i 177 (440)
=+++|++++|+||+||||||| ++++.+...+.. |.+.+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTL-l~lLlG~~~~~~GG~I~l 677 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSL-ISAMLGELPPRSDASVVI 677 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHH-HHHHHHhhccCCCceEEE
Confidence 478999999999999999999 899999888776 66664
No 453
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.94 E-value=4.4e-05 Score=71.87 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~ 165 (440)
++.|.||||+||||| +..+.
T Consensus 24 ~~~i~G~NGsGKTTL-l~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTI-IEALK 43 (204)
T ss_pred eEEEECCCCCCHHHH-HHHHH
Confidence 999999999999999 67664
No 454
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.93 E-value=5.4e-05 Score=64.79 Aligned_cols=115 Identities=21% Similarity=0.297 Sum_probs=60.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceE
Q 013567 146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLI 225 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lv 225 (440)
+.|+||||+|||+++..++ ... +...+.++.....+. ........+...+.+......+.++
T Consensus 1 ill~G~~G~GKT~l~~~la-~~l--~~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~vl 62 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA-QYL--GFPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCVL 62 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH-HHT--TSEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEEE
T ss_pred CEEECcCCCCeeHHHHHHH-hhc--ccccccccccccccc---------------cccccccccccccccccccccceee
Confidence 5799999999999954444 443 345666665432111 1111222333344443222237899
Q ss_pred EEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEeccccccc
Q 013567 226 CVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK-AGCTLIFLNQIRYKIG 284 (440)
Q Consensus 226 VIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~-~~~tVI~inhl~~~ig 284 (440)
+||.+..+.+.. ..... ....+.+...+..+...... .++.||++++..+.+.
T Consensus 63 ~iDe~d~l~~~~--~~~~~----~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~ 116 (132)
T PF00004_consen 63 FIDEIDKLFPKS--QPSSS----SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKID 116 (132)
T ss_dssp EEETGGGTSHHC--STSSS----HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSC
T ss_pred eeccchhccccc--ccccc----cccccccceeeecccccccccccceeEEeeCChhhCC
Confidence 999999998533 11101 11122233333333333332 4578888888766553
No 455
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.92 E-value=7.1e-05 Score=71.56 Aligned_cols=26 Identities=38% Similarity=0.721 Sum_probs=22.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li 164 (440)
=+++|++++|+|+||||||||+...+
T Consensus 17 ~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 17 DIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred ecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 37899999999999999999964433
No 456
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.91 E-value=0.0001 Score=63.18 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
.+..+.|.||+|+|||+++..++..+...+..+++++....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 56789999999999999977777777666777888876543
No 457
>PRK08181 transposase; Validated
Probab=97.90 E-value=4.1e-05 Score=75.25 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS 219 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~ 219 (440)
+..++-+.|+||+|+|||.|+..++..+...+..++|++..+-. ..+... ....+.++.+. .+
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~-----~~l~~a------~~~~~~~~~l~---~l--- 165 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV-----QKLQVA------RRELQLESAIA---KL--- 165 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHH-----HHHHHH------HhCCcHHHHHH---HH---
Confidence 45778899999999999999888888888888889998764322 111100 01122223222 22
Q ss_pred CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc-ccccccccCCce
Q 013567 220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI-RYKIGVYYGNPE 291 (440)
Q Consensus 220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl-~~~ig~~~~~~~ 291 (440)
..++++|||.+..... .+ . -...+..+.....+.+ ++|++++. ...++..++++.
T Consensus 166 ~~~dLLIIDDlg~~~~-~~-----------~----~~~~Lf~lin~R~~~~-s~IiTSN~~~~~w~~~~~D~~ 221 (269)
T PRK08181 166 DKFDLLILDDLAYVTK-DQ-----------A----ETSVLFELISARYERR-SILITANQPFGEWNRVFPDPA 221 (269)
T ss_pred hcCCEEEEeccccccC-CH-----------H----HHHHHHHHHHHHHhCC-CEEEEcCCCHHHHHHhcCCcc
Confidence 2578999999986542 10 0 1223334444333334 55555554 456666665543
No 458
>PRK06526 transposase; Provisional
Probab=97.90 E-value=2.4e-05 Score=76.22 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
-+..+.-+.|+||||+|||+||..++..+...+..++|++..
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~ 135 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA 135 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH
Confidence 356778899999999999999999988888888888886543
No 459
>PRK09183 transposase/IS protein; Provisional
Probab=97.89 E-value=5.1e-05 Score=74.18 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=34.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
++.|+.+.|+||||+|||+|+..++..+...+..+.|++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 78899999999999999999877766666777788888754
No 460
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.88 E-value=0.00015 Score=68.04 Aligned_cols=88 Identities=22% Similarity=0.360 Sum_probs=56.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHH-HHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMAL-EIADRM 216 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l-~~i~~l 216 (440)
.++.++||+|+||||.+.++++.+...+.++.+++..... ++ .+++.+|+.+... ....+..++. +.+++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~--~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVA--RTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEES--STTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchh--hcchhhHHHHHHHHHHH
Confidence 4789999999999999999999998778888888865321 11 2577777654221 1122333333 344443
Q ss_pred HhcCCcceEEEecccccC
Q 013567 217 CRSGAIDLICVDSVSALT 234 (440)
Q Consensus 217 ~~~~~~~lvVIDsl~~l~ 234 (440)
+..+.++|+||+.....
T Consensus 80 -~~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 80 -RKKGYDLVLIDTAGRSP 96 (196)
T ss_dssp -HHTTSSEEEEEE-SSSS
T ss_pred -hhcCCCEEEEecCCcch
Confidence 44578999999976543
No 461
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=1.4e-05 Score=91.21 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=48.2
Q ss_pred HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CcEEEEcCCCCCChhhhhhhcccccc
Q 013567 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG--GNAMLVDAEHAFDPSYSKALGVDVEN 197 (440)
Q Consensus 132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~--~~vv~id~E~~~~~~~a~~lGv~~~~ 197 (440)
|+.+- |-+.||.+++|.|++|+||||| |+++++-...| .|-+.|++-...+...+|..|+.-++
T Consensus 807 L~~V~-G~~kPG~LTALMG~SGAGKTTL-LdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~ 872 (1391)
T KOG0065|consen 807 LNNVS-GAFKPGVLTALMGESGAGKTTL-LDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQ 872 (1391)
T ss_pred hhcCc-eEecCCceeehhcCCCCchHHH-HHHHhcCcccceEEeEEEECCeeCchhhhccccceeecc
Confidence 34433 8899999999999999999999 88887654332 46677887654445678888887654
No 462
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.86 E-value=0.00033 Score=63.74 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=53.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------hhhhhcccccceeecCCCCHHHHHH-HHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------YSKALGVDVENLIVCQPDNGEMALE-IADRMC 217 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~a~~lGv~~~~l~i~~~~~~ee~l~-~i~~l~ 217 (440)
++.+.|+||+||||++.+++..+.+.+..+++++........ +++..|++.. ....+.+..+++. .+.. .
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVF--EEGEGKDPVSIAKRAIEH-A 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEE--ecCCCCCHHHHHHHHHHH-H
Confidence 688999999999999999998888778889999876422111 1223332211 1112233444432 2332 2
Q ss_pred hcCCcceEEEeccccc
Q 013567 218 RSGAIDLICVDSVSAL 233 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l 233 (440)
...+.++++||.....
T Consensus 79 ~~~~~d~viiDt~g~~ 94 (173)
T cd03115 79 REENFDVVIVDTAGRL 94 (173)
T ss_pred HhCCCCEEEEECcccc
Confidence 3457889999986544
No 463
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=97.85 E-value=0.00014 Score=68.16 Aligned_cols=135 Identities=20% Similarity=0.138 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChhhh-hhh-----cccc--------------
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPSYS-KAL-----GVDV-------------- 195 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~~a-~~l-----Gv~~-------------- 195 (440)
.|.+++|.||.++|||....|+++...-| +.-|+|||....++..+. +.+ ..+.
T Consensus 37 aG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~~ 116 (293)
T KOG2859|consen 37 AGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQL 116 (293)
T ss_pred cCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhHH
Confidence 68999999999999999988888887643 346899999998887521 111 1111
Q ss_pred --------cceeecCCCCHHHHHHH---HHHH-HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHH
Q 013567 196 --------ENLIVCQPDNGEMALEI---ADRM-CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMS 263 (440)
Q Consensus 196 --------~~l~i~~~~~~ee~l~~---i~~l-~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~ 263 (440)
.++.+.......+++.. ++.. +...++.++++||+.+++......+ ++. ...+.+.++.....|.
T Consensus 117 eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~--le~-~n~~~~~lr~~~q~Le 193 (293)
T KOG2859|consen 117 EEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKI--LEK-RNSMYRHLRLLQQRLE 193 (293)
T ss_pred HHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccch--Hhh-hhhHHHHHHHHHHHHH
Confidence 23334333333333322 2222 3344578999999999987554443 221 1233444555566667
Q ss_pred HHHHhcCCEEEEEecc
Q 013567 264 GNASKAGCTLIFLNQI 279 (440)
Q Consensus 264 ~lak~~~~tVI~inhl 279 (440)
++++.+-..++.+.+.
T Consensus 194 KL~~d~~lv~~aT~~t 209 (293)
T KOG2859|consen 194 KLCKDAILVGMATVET 209 (293)
T ss_pred HHHhhheeeeeeehhH
Confidence 7777766666666554
No 464
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00013 Score=74.66 Aligned_cols=60 Identities=22% Similarity=0.476 Sum_probs=51.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh---hhhhhccccccee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS---YSKALGVDVENLI 199 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~---~a~~lGv~~~~l~ 199 (440)
=+|+|+.+.|+|++|+||||+ ++++.+....+.|++.+|+.+..+.. ..+.+|+.+++-.
T Consensus 285 ~i~~g~tvAiVg~SG~gKsTI-~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtv 347 (497)
T COG5265 285 TIPLGKTVAIVGESGAGKSTI-LRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV 347 (497)
T ss_pred cccCccEEEEEeCCCCcHHHH-HHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccce
Confidence 479999999999999999999 99999999999999999998765543 5677899887543
No 465
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.80 E-value=0.00031 Score=63.50 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhhhhhccc--ccc---eee-cCCCC-HHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYSKALGVD--VEN---LIV-CQPDN-GEMALEIAD 214 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a~~lGv~--~~~---l~i-~~~~~-~ee~l~~i~ 214 (440)
+.++.|+||||+|||++ ++.+.-+. ....+... ..+. +.|.. ... +.. .+... ..+......
T Consensus 21 ~~~~~i~G~NgsGKS~~-l~~i~~~~~~~~~~~~~-~~~~--------~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~ 90 (162)
T cd03227 21 GSLTIITGPNGSGKSTI-LDAIGLALGGAQSATRR-RSGV--------KAGCIVAAVSAELIFTRLQLSGGEKELSALAL 90 (162)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcchhhhc-cCcc--------cCCCcceeeEEEEehheeeccccHHHHHHHHH
Confidence 47999999999999999 55543332 22212221 0000 01100 000 111 11111 233444444
Q ss_pred HHHhc--CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccc
Q 013567 215 RMCRS--GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282 (440)
Q Consensus 215 ~l~~~--~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ 282 (440)
.+... ..++++++|.+..-....+ .+.+.. .+.....+ ++++|+++|..+.
T Consensus 91 ~L~~~~~~~~~llllDEp~~gld~~~-------------~~~l~~---~l~~~~~~-~~~vii~TH~~~~ 143 (162)
T cd03227 91 ILALASLKPRPLYILDEIDRGLDPRD-------------GQALAE---AILEHLVK-GAQVIVITHLPEL 143 (162)
T ss_pred HHHhcCCCCCCEEEEeCCCCCCCHHH-------------HHHHHH---HHHHHHhc-CCEEEEEcCCHHH
Confidence 44432 2689999999876653111 112333 33444455 8999999998763
No 466
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.79 E-value=0.00012 Score=74.83 Aligned_cols=128 Identities=23% Similarity=0.288 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--------cCCcEEEEcC---------CC--CCCh-hhhhhhcccccce
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK--------LGGNAMLVDA---------EH--AFDP-SYSKALGVDVENL 198 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--------~~~~vv~id~---------E~--~~~~-~~a~~lGv~~~~l 198 (440)
-+.+|+++.|.|++|+||||+ ++++.+.+. +++|.+-+-. |. .+.. .+.+.++-++.++
T Consensus 405 ~ikpGdvvaVvGqSGaGKttl-lRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~ 483 (593)
T COG2401 405 EIKPGDVVAVVGQSGAGKTTL-LRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDL 483 (593)
T ss_pred EecCCCeEEEEecCCCCcchH-HHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCch
Confidence 478999999999999999999 999998874 3344433211 10 1110 0112221111110
Q ss_pred ----------------ee----cCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHH
Q 013567 199 ----------------IV----CQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQA 258 (440)
Q Consensus 199 ----------------~i----~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~ 258 (440)
.+ .+-.+...-...+.+++. .++.++++|-+.+.... +. ....
T Consensus 484 ~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAklla-erpn~~~iDEF~AhLD~--~T--------------A~rV 546 (593)
T COG2401 484 NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLA-ERPNVLLIDEFAAHLDE--LT--------------AVRV 546 (593)
T ss_pred hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHh-cCCCcEEhhhhhhhcCH--HH--------------HHHH
Confidence 00 000111111223333333 35789999999888741 11 2356
Q ss_pred HHHHHHHHHhcCCEEEEEeccccccc
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
.+++.+++++.++|+++++|-.+...
T Consensus 547 ArkiselaRe~giTlivvThrpEv~~ 572 (593)
T COG2401 547 ARKISELAREAGITLIVVTHRPEVGN 572 (593)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHh
Confidence 77888999999999999999766443
No 467
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.78 E-value=0.00011 Score=69.78 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
++++|+||||+||||| ++.+....
T Consensus 31 ~~~~l~Gpn~sGKstl-lr~i~~~~ 54 (216)
T cd03284 31 QILLITGPNMAGKSTY-LRQVALIA 54 (216)
T ss_pred eEEEEECCCCCChHHH-HHHHHHHH
Confidence 8999999999999999 77776544
No 468
>PLN03232 ABC transporter C family member; Provisional
Probab=97.78 E-value=4.8e-05 Score=91.00 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=29.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN 173 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~ 173 (440)
=+++|++++|+||+||||||| ++++.+...+..|
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTL-l~lLlG~~~~~~G 672 (1495)
T PLN03232 639 EIPVGSLVAIVGGTGEGKTSL-ISAMLGELSHAET 672 (1495)
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCcccCC
Confidence 478999999999999999999 8999988876543
No 469
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.75 E-value=0.00066 Score=66.86 Aligned_cols=90 Identities=22% Similarity=0.370 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCH-HHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNG-EMALEIAD 214 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~-ee~l~~i~ 214 (440)
++.++.++|++|+||||++.+++..+.+.+..+++++..... .+ .+++..|+..- ......+. ......+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCCCCCCHHHHHHHHHH
Confidence 467999999999999999999998888777889888876311 11 14555553210 01111122 22233333
Q ss_pred HHHhcCCcceEEEecccccC
Q 013567 215 RMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 215 ~l~~~~~~~lvVIDsl~~l~ 234 (440)
.. ...+.++|+||......
T Consensus 149 ~~-~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 149 KA-KARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HH-HHCCCCEEEEeCCCCCc
Confidence 32 23568999999987654
No 470
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.75 E-value=0.00011 Score=69.42 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.+|+++.|.||||+||||| ++.+..
T Consensus 26 ~~~~~~~i~G~NGsGKSTl-l~~i~~ 50 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTI-LDAITY 50 (213)
T ss_pred CccCEEEEECCCCCCHHHH-HHHhee
Confidence 4588999999999999999 777763
No 471
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00022 Score=64.22 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEE
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAM 175 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv 175 (440)
-+.|+|+||+||||++++++..+...+-++.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 4789999999999998888877776654443
No 472
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.73 E-value=0.00057 Score=68.81 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=54.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-----h--hhhhhhcccccceeecCCCCH-HHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-----P--SYSKALGVDVENLIVCQPDNG-EMALEI 212 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-----~--~~a~~lGv~~~~l~i~~~~~~-ee~l~~ 212 (440)
.+|.++.|+||||+||||++.+++..+...+..+++++.. ... + .++.+.++..- ........ ..+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D-~~r~~a~eql~~~a~~~~i~~~--~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD-TFRAAAIEQLQVWGERVGVPVI--AQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC-ccchhhHHHHHHHHHHcCceEE--EeCCCCCHHHHHHHH
Confidence 4689999999999999999888887777666677777654 221 1 13444443210 00111111 222222
Q ss_pred HHHHHhcCCcceEEEecccccC
Q 013567 213 ADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 213 i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
+... ...+.++|+||....+.
T Consensus 189 l~~~-~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 189 IQAA-KARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHH-HhCCCCEEEEeCCCCCc
Confidence 2222 23578999999987665
No 473
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.72 E-value=0.00026 Score=67.68 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=26.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHH-HhhcCCcE
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAE-VQKLGGNA 174 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~-~~~~~~~v 174 (440)
+.+|+++.|.||||+||||| ++.+.. ...+..|+
T Consensus 28 ~~~g~~~~itG~N~~GKStl-l~~i~~~~~la~~G~ 62 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSY-IRQVALITIMAQIGS 62 (222)
T ss_pred ecCCcEEEEECCCCCCHHHH-HHHHHHHHHHHhCCC
Confidence 56899999999999999999 777766 44444444
No 474
>PRK08727 hypothetical protein; Validated
Probab=97.71 E-value=0.0003 Score=67.65 Aligned_cols=95 Identities=22% Similarity=0.321 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCc
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAI 222 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~ 222 (440)
...+.|+|++|+|||.|+.-++..+.+.+..++|++.++... .+...++.+ ...
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~-----------------------~~~~~~~~l---~~~ 94 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG-----------------------RLRDALEAL---EGR 94 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh-----------------------hHHHHHHHH---hcC
Confidence 356999999999999996666666677788889987543110 011122222 357
Q ss_pred ceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI 279 (440)
Q Consensus 223 ~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl 279 (440)
++++||.+..+..... ....+-.+....++.+.+||++++.
T Consensus 95 dlLiIDDi~~l~~~~~----------------~~~~lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 95 SLVALDGLESIAGQRE----------------DEVALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred CEEEEeCcccccCChH----------------HHHHHHHHHHHHHHcCCeEEEECCC
Confidence 8999999976642110 0122334555556778888888775
No 475
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.71 E-value=2.2e-05 Score=81.86 Aligned_cols=109 Identities=23% Similarity=0.335 Sum_probs=69.7
Q ss_pred cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-h-hhhhccccc-ce-
Q 013567 123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-Y-SKALGVDVE-NL- 198 (440)
Q Consensus 123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~-a~~lGv~~~-~l- 198 (440)
..+.||+..+|.++ -+.+|+.+.|+|++|+||||| ++++.+...++.+++.+.+|...+-. + .+.++-... .+
T Consensus 147 ~~l~TGi~aID~L~--~I~~Gqri~I~G~SGsGKTTL-L~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~ 223 (450)
T PRK06002 147 TGLRTGVRVIDIFT--PLCAGQRIGIFAGSGVGKSTL-LAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVA 223 (450)
T ss_pred EEcCCCcEEeeeec--eecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEE
Confidence 45779999999886 599999999999999999999 78888888777777777665433321 1 111110011 12
Q ss_pred eecCCCC--H------HHHHHHHHHHHhcCCcceEEEecccccC
Q 013567 199 IVCQPDN--G------EMALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 199 ~i~~~~~--~------ee~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
++.+.+. . ...+.+++.+..++.--++++||++.+.
T Consensus 224 vV~qsd~~~~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A 267 (450)
T PRK06002 224 VVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFA 267 (450)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchHHHH
Confidence 2232221 2 2233445555545444477899988765
No 476
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.70 E-value=0.00017 Score=71.43 Aligned_cols=82 Identities=27% Similarity=0.418 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-C-CcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL-G-GNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~-~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
+.+.++.|+||+|+||||++.+++..+... + ..+.+++.+... ++ .+++.+|+++. ...+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-----~~~~~~~l~~~ 266 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-----VARDPKELRKA 266 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-----ccCCHHHHHHH
Confidence 468899999999999999999988888765 4 688899876421 11 13444454331 12334455555
Q ss_pred HHHHHhcCCcceEEEecc
Q 013567 213 ADRMCRSGAIDLICVDSV 230 (440)
Q Consensus 213 i~~l~~~~~~~lvVIDsl 230 (440)
+..+ ...++|+||..
T Consensus 267 l~~~---~~~d~vliDt~ 281 (282)
T TIGR03499 267 LDRL---RDKDLILIDTA 281 (282)
T ss_pred HHHc---cCCCEEEEeCC
Confidence 5544 35799999974
No 477
>PRK12377 putative replication protein; Provisional
Probab=97.70 E-value=0.00016 Score=70.29 Aligned_cols=105 Identities=14% Similarity=0.229 Sum_probs=63.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID 223 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~ 223 (440)
.-+.|+|+||+|||.||..++..+...+..|+|++..+..... ...+ + ...+..+ .++.+ ..++
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l-~~~~--~-------~~~~~~~---~l~~l---~~~d 165 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL-HESY--D-------NGQSGEK---FLQEL---CKVD 165 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH-HHHH--h-------ccchHHH---HHHHh---cCCC
Confidence 5789999999999999888888888888889998765322211 1111 0 1111222 23333 3689
Q ss_pred eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567 224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280 (440)
Q Consensus 224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~ 280 (440)
+++||.+..... .+ .. ...+..+...-.+.+.++|++|++.
T Consensus 166 LLiIDDlg~~~~-s~-----------~~----~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 166 LLVLDEIGIQRE-TK-----------NE----QVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred EEEEcCCCCCCC-CH-----------HH----HHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999976542 11 01 2234444444344556777777654
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.69 E-value=9.8e-05 Score=68.38 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
+..|+++.|.||+||||||| ++.+.+...+..+.+.+.
T Consensus 22 v~~g~~i~I~G~tGSGKTTl-l~aL~~~i~~~~~~i~ie 59 (186)
T cd01130 22 VEARKNILISGGTGSGKTTL-LNALLAFIPPDERIITIE 59 (186)
T ss_pred HhCCCEEEEECCCCCCHHHH-HHHHHhhcCCCCCEEEEC
Confidence 56789999999999999999 788888888888888874
No 479
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.69 E-value=0.00029 Score=66.39 Aligned_cols=29 Identities=38% Similarity=0.434 Sum_probs=24.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
....|+++.|.||||+||||+ ++.+..++
T Consensus 25 ~~~~~~~~~l~G~n~~GKstl-l~~i~~~~ 53 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTY-LKQIALLA 53 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHH-HHHHHHHH
Confidence 345789999999999999999 77776554
No 480
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.001 Score=68.54 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMALEIADRM 216 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l 216 (440)
+.++.|+||+|+||||++..++..+...+..+.+++..... ++ .+++.+|+. +....+...+...+..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-----v~v~~d~~~L~~aL~~l 315 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-----VIAVRDEAAMTRALTYF 315 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-----EEecCCHHHHHHHHHHH
Confidence 47999999999999999999888887777788888865321 11 133344432 22223455555555554
Q ss_pred HhcCCcceEEEecccccC
Q 013567 217 CRSGAIDLICVDSVSALT 234 (440)
Q Consensus 217 ~~~~~~~lvVIDsl~~l~ 234 (440)
....+.++|+||......
T Consensus 316 k~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 316 KEEARVDYILIDTAGKNY 333 (436)
T ss_pred HhccCCCEEEEeCccccC
Confidence 333468999999877654
No 481
>PRK10867 signal recognition particle protein; Provisional
Probab=97.67 E-value=0.00046 Score=72.17 Aligned_cols=89 Identities=21% Similarity=0.281 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMALEIAD 214 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~l~~i~ 214 (440)
..++.++|++|+||||++.+++..+.+. +..++++++.. ..+. +++..|+++-. .....++.++...+-
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~-~R~aa~eQL~~~a~~~gv~v~~--~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV-YRPAAIEQLKTLGEQIGVPVFP--SGDGQDPVDIAKAAL 176 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc-cchHHHHHHHHHHhhcCCeEEe--cCCCCCHHHHHHHHH
Confidence 4799999999999999999999988877 78899998763 2221 34455544211 111234444443333
Q ss_pred HHHhcCCcceEEEecccccC
Q 013567 215 RMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 215 ~l~~~~~~~lvVIDsl~~l~ 234 (440)
...+..+.++|+||....+.
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcc
Confidence 33445678999999987654
No 482
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.0003 Score=72.93 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=53.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHH-hhcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEV-QKLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~-~~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
|..++.++.|+||+|+||||++.+++... ...+..+.+++++.-- .+ .+++.+|++.. ...++..
T Consensus 219 g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~--------~~~~~~~ 290 (432)
T PRK12724 219 GKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY--------PVKDIKK 290 (432)
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee--------ehHHHHH
Confidence 34567899999999999999999999866 4567788888876411 11 13444555321 1112222
Q ss_pred HHHHHHhcCCcceEEEeccc
Q 013567 212 IADRMCRSGAIDLICVDSVS 231 (440)
Q Consensus 212 ~i~~l~~~~~~~lvVIDsl~ 231 (440)
.... +...+.++|+||+..
T Consensus 291 l~~~-l~~~~~D~VLIDTaG 309 (432)
T PRK12724 291 FKET-LARDGSELILIDTAG 309 (432)
T ss_pred HHHH-HHhCCCCEEEEeCCC
Confidence 2222 234578999999944
No 483
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.65 E-value=0.00016 Score=75.06 Aligned_cols=124 Identities=22% Similarity=0.323 Sum_probs=64.9
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-|++++.-+.|+||||+|||+||-.++.. . +...+.+.+.. .....+| ..+..+..+-...
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~-l--~~~fi~i~~s~----l~~k~~g------------e~~~~lr~lf~~A 234 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHH-T--TATFIRVVGSE----FVQKYLG------------EGPRMVRDVFRLA 234 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHh-c--CCCEEEEehHH----HHHHhcc------------hhHHHHHHHHHHH
Confidence 47888899999999999999996544433 2 22223332210 0001111 1111121111223
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
+...+.+++||.+..+.+.. .....+. . ....+.+.+.+..+..+....++.||++++..+.+
T Consensus 235 ~~~~P~ILfIDEID~i~~~r-~~~~~~~-d-~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATKR-FDAQTGA-D-REVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcCCeEEEEECHhhhcccc-ccccCCc-c-HHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 34578899999999886422 1111111 0 11223444555554444344678888888866544
No 484
>PF13173 AAA_14: AAA domain
Probab=97.63 E-value=0.00028 Score=61.18 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
++++.|.||.|+||||++.+++.... .....+|++.++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCH
Confidence 57899999999999999888887776 6678899987754
No 485
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00065 Score=71.07 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
..|+++.|+||+|+||||++.+++..+. ..+..+.+++..... ++ .+++.+|+.. ....+..++...
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~-----~~~~~~~~l~~~ 293 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV-----EVVYDPKELAKA 293 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-----EccCCHHhHHHH
Confidence 4578999999999999999999988876 456789999875421 11 1344455432 112334455555
Q ss_pred HHHHHhcCCcceEEEeccccc
Q 013567 213 ADRMCRSGAIDLICVDSVSAL 233 (440)
Q Consensus 213 i~~l~~~~~~~lvVIDsl~~l 233 (440)
+..+ ...++|+||.....
T Consensus 294 l~~~---~~~DlVlIDt~G~~ 311 (424)
T PRK05703 294 LEQL---RDCDVILIDTAGRS 311 (424)
T ss_pred HHHh---CCCCEEEEeCCCCC
Confidence 5443 35799999987643
No 486
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00014 Score=76.01 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 210 LEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 210 l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
++.++.+.. ++|++.+|..+.+.. ...+.-|-.++..+.+|+|+++|.+.-.
T Consensus 207 laLARAlf~--~pDlLLLDEPTNhLD--------------------v~av~WLe~yL~t~~~T~liVSHDr~FL 258 (582)
T KOG0062|consen 207 LALARALFA--KPDLLLLDEPTNHLD--------------------VVAVAWLENYLQTWKITSLIVSHDRNFL 258 (582)
T ss_pred HHHHHHHhc--CCCEEeecCCcccch--------------------hHHHHHHHHHHhhCCceEEEEeccHHHH
Confidence 445555543 688999998887763 1234456788888999999999998744
No 487
>PRK06893 DNA replication initiation factor; Validated
Probab=97.61 E-value=0.00054 Score=65.65 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
+..+.|+||||+|||+|+..++..+.+.+.++.|++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34789999999999999666666677777889998864
No 488
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.58 E-value=0.00027 Score=67.49 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=21.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.++++++.|.||||+||||+ ++.+..
T Consensus 27 ~~~~~~~~l~G~n~~GKstl-l~~i~~ 52 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTY-IRQIGV 52 (222)
T ss_pred ecCCeEEEEECCCCCChHHH-HHHHHH
Confidence 45789999999999999999 555543
No 489
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.58 E-value=4.3e-05 Score=79.58 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=41.4
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG 172 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~ 172 (440)
-+.+.||+..||.++ =+.+|+.+.|+|++|+||||| ++++.+...++.
T Consensus 136 ~~~l~TGi~aID~ll--~I~~GQ~igI~G~sGaGKSTL-l~~I~g~~~~dv 183 (434)
T PRK07196 136 DTPLDVGVNAINGLL--TIGKGQRVGLMAGSGVGKSVL-LGMITRYTQADV 183 (434)
T ss_pred ccccccceeeccceE--eEecceEEEEECCCCCCccHH-HHHHhcccCCCe
Confidence 457899999999986 678999999999999999999 788888776553
No 490
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.58 E-value=0.0003 Score=68.94 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH--HhhcCCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAE--VQKLGGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEMALEIA 213 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~--~~~~~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee~l~~i 213 (440)
+...++.|+|++|+||||||.+++.. ....-..++|++........ +.+.++...... ..+.+.++....+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l 94 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI--SDPKDIEELQDQL 94 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS--SCCSSHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 78899999999999999999998876 33344578888876554332 334444443222 3455667777777
Q ss_pred HHHHhcCCcceEEEecccc
Q 013567 214 DRMCRSGAIDLICVDSVSA 232 (440)
Q Consensus 214 ~~l~~~~~~~lvVIDsl~~ 232 (440)
.+.+... .-++|+|.+..
T Consensus 95 ~~~L~~~-~~LlVlDdv~~ 112 (287)
T PF00931_consen 95 RELLKDK-RCLLVLDDVWD 112 (287)
T ss_dssp HHHHCCT-SEEEEEEEE-S
T ss_pred hhhhccc-cceeeeeeecc
Confidence 7766544 66899998653
No 491
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.57 E-value=0.00036 Score=70.58 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=63.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID 223 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~ 223 (440)
.-+.|+|++|+|||.|+..++..+...+..|+|++..+.++......+ ......++ .+..+ ..++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~---------~~~~~~~~---~~~~l---~~~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF---------NNDKELEE---VYDLL---INCD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh---------ccchhHHH---HHHHh---ccCC
Confidence 568999999999999988888888888889999986543222111000 00011111 13333 3589
Q ss_pred eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567 224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280 (440)
Q Consensus 224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~ 280 (440)
++|||.+..... .+. ....+..+.......+.++|+++...
T Consensus 249 LLIIDDlG~e~~-t~~---------------~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 249 LLIIDDLGTEKI-TEF---------------SKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred EEEEeccCCCCC-CHH---------------HHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999999987642 110 11233444444445566677776653
No 492
>PRK14974 cell division protein FtsY; Provisional
Probab=97.57 E-value=0.0018 Score=65.68 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=54.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecCCCCHHHH-HHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQPDNGEMA-LEIAD 214 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~~~~~ee~-l~~i~ 214 (440)
+.++.++|+||+||||++.+++..+...+..++++++.. +.. .++..+|+..-.. ....+...+ .+.++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt-~R~~a~eqL~~~a~~lgv~v~~~--~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT-FRAGAIEQLEEHAERLGVKVIKH--KYGADPAAVAYDAIE 216 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc-CcHHHHHHHHHHHHHcCCceecc--cCCCCHHHHHHHHHH
Confidence 579999999999999998888877766667788877542 211 1345555533211 111122222 23333
Q ss_pred HHHhcCCcceEEEecccccC
Q 013567 215 RMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 215 ~l~~~~~~~lvVIDsl~~l~ 234 (440)
. ....+.++|+||....+.
T Consensus 217 ~-~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 217 H-AKARGIDVVLIDTAGRMH 235 (336)
T ss_pred H-HHhCCCCEEEEECCCccC
Confidence 2 234568899999987665
No 493
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=97.56 E-value=0.00029 Score=65.95 Aligned_cols=45 Identities=33% Similarity=0.548 Sum_probs=36.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD 184 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~ 184 (440)
-+|.|.-+.++|.||+||||| |+++.+-.-.+.+++-+.+...+.
T Consensus 36 dlp~gsRcLlVGaNGaGKtTl-LKiLsGKhmv~~~~v~VlgrsaFh 80 (291)
T KOG2355|consen 36 DLPAGSRCLLVGANGAGKTTL-LKILSGKHMVGGGVVQVLGRSAFH 80 (291)
T ss_pred ccCCCceEEEEecCCCchhhh-HHHhcCcccccCCeEEEcCcCccc
Confidence 689999999999999999999 999987655556777776665554
No 494
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00049 Score=70.58 Aligned_cols=87 Identities=20% Similarity=0.337 Sum_probs=54.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cC-CcEEEEcCCCCC----Ch--hhhhhhcccccceeecCCCCHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LG-GNAMLVDAEHAF----DP--SYSKALGVDVENLIVCQPDNGEMAL 210 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~-~~vv~id~E~~~----~~--~~a~~lGv~~~~l~i~~~~~~ee~l 210 (440)
-++.|.++.|+||+|+||||++.+++..+.. .+ ..+.+++.+... ++ .+++.+|+... . ..+..++.
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~---~--~~~~~~l~ 207 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH---A--VKDGGDLQ 207 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE---e--cCCcccHH
Confidence 3677999999999999999998888887653 34 467777755321 11 14555665331 1 11222222
Q ss_pred HHHHHHHhcCCcceEEEeccccc
Q 013567 211 EIADRMCRSGAIDLICVDSVSAL 233 (440)
Q Consensus 211 ~~i~~l~~~~~~~lvVIDsl~~l 233 (440)
..+.++ .+.++|+||.....
T Consensus 208 ~~l~~l---~~~DlVLIDTaG~~ 227 (374)
T PRK14722 208 LALAEL---RNKHMVLIDTIGMS 227 (374)
T ss_pred HHHHHh---cCCCEEEEcCCCCC
Confidence 333332 35789999998644
No 495
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.55 E-value=0.00065 Score=63.62 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKL 170 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~ 170 (440)
++.|+||+||||||++..++......
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 79999999999999944444444333
No 496
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.55 E-value=0.0012 Score=65.45 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=84.2
Q ss_pred CcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCcEEEEcCCCCCChh-----hhhhhcccc
Q 013567 128 GCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVDAEHAFDPS-----YSKALGVDV 195 (440)
Q Consensus 128 Gi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~------~~~~vv~id~E~~~~~~-----~a~~lGv~~ 195 (440)
-+..|..++. ..-.+=-...|+|+++.|||+++-++....-. ..-+|+++.....++.. +...+|+..
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 3445555553 12222234899999999999997777754321 11367888765555442 344555543
Q ss_pred cceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Q 013567 196 ENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIF 275 (440)
Q Consensus 196 ~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~ 275 (440)
. ...+.......+..+++..+++++|||.+..+.. |. .+.-+.++..|+.+..+.++++|.
T Consensus 125 ~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs------~~~qr~~Ln~LK~L~NeL~ipiV~ 185 (302)
T PF05621_consen 125 R-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GS------YRKQREFLNALKFLGNELQIPIVG 185 (302)
T ss_pred C-----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------cc------HHHHHHHHHHHHHHhhccCCCeEE
Confidence 2 2334555555666777788999999999988763 21 122356777788889999999998
Q ss_pred Ee
Q 013567 276 LN 277 (440)
Q Consensus 276 in 277 (440)
+.
T Consensus 186 vG 187 (302)
T PF05621_consen 186 VG 187 (302)
T ss_pred ec
Confidence 84
No 497
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.55 E-value=0.00057 Score=65.78 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.+..+.|+||+|+|||+|+..++..+...+..+.|++.+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 346889999999999999665666666677788898764
No 498
>PF05729 NACHT: NACHT domain
Probab=97.53 E-value=0.00071 Score=60.01 Aligned_cols=123 Identities=19% Similarity=0.254 Sum_probs=61.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCC------cEEEEcCCCCCChhhhhhhcccccceeecC-CCCHHHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGG------NAMLVDAEHAFDPSYSKALGVDVENLIVCQ-PDNGEMALEIADRM 216 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~------~vv~id~E~~~~~~~a~~lGv~~~~l~i~~-~~~~ee~l~~i~~l 216 (440)
+++.|.|++|+||||++.+++........ -++|+............. +.++.... .............+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRS----LADLLFDQLPESIAPIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccch----HHHHHHHhhccchhhhHHHHHHH
Confidence 47899999999999998888877775431 234455443332211101 11111100 11111111123333
Q ss_pred HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567 217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280 (440)
Q Consensus 217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~ 280 (440)
......-+++||.+-.+...... ...+.+...+..+.....-.++.+|+++-..
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQS----------QERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred HHcCCceEEEEechHhcccchhh----------hHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 33445557899998877631110 0111234444444443333577788776543
No 499
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.52 E-value=0.00052 Score=71.93 Aligned_cols=123 Identities=22% Similarity=0.301 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
|+.++.-+.|+||||+|||++|- .+++... ...+.+.+.+.. ...+| .....+..+-....
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAr-aIA~el~--~~fi~V~~seL~----~k~~G------------e~~~~vr~lF~~A~ 273 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAK-AVANETS--ATFLRVVGSELI----QKYLG------------DGPKLVRELFRVAE 273 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHH-HHHHhhC--CCEEEEecchhh----hhhcc------------hHHHHHHHHHHHHH
Confidence 78888889999999999999954 4444332 223333321110 00001 11111111112223
Q ss_pred cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
.+.+.+++||.+..+..........++. ...+.+.+.+..+..+....++.||++++..+.+
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~---e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEK---EIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccH---HHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 4567899999988776432211111211 1233445555555555556688899888765544
No 500
>PRK13695 putative NTPase; Provisional
Probab=97.52 E-value=0.00038 Score=63.54 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCc
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGN 173 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~ 173 (440)
.+.|.|+||+|||||+..++..+...+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 47899999999999955554444433433
Done!