Query 013567
Match_columns 440
No_of_seqs 501 out of 4076
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cmu_A Protein RECA, recombina 100.0 8.1E-65 2.8E-69 592.9 32.0 324 89-414 1720-2044(2050)
2 3cmw_A Protein RECA, recombina 100.0 8.2E-63 2.8E-67 571.5 31.6 324 89-414 1376-1700(1706)
3 3hr8_A Protein RECA; alpha and 100.0 1.3E-60 4.6E-65 481.8 33.2 327 88-416 4-337 (356)
4 1xp8_A RECA protein, recombina 100.0 3.5E-57 1.2E-61 459.3 30.4 345 88-434 18-365 (366)
5 1u94_A RECA protein, recombina 100.0 2.1E-56 7.3E-61 452.2 32.0 339 89-429 8-347 (356)
6 3cmu_A Protein RECA, recombina 100.0 5.8E-56 2E-60 518.5 33.3 339 89-429 1372-1711(2050)
7 2zr9_A Protein RECA, recombina 100.0 2.1E-54 7.1E-59 436.8 32.0 324 90-415 7-331 (349)
8 3io5_A Recombination and repai 100.0 1.7E-53 5.7E-58 419.8 25.0 282 122-409 4-312 (333)
9 3cmw_A Protein RECA, recombina 100.0 6.4E-49 2.2E-53 455.6 32.8 328 89-418 328-656 (1706)
10 2z43_A DNA repair and recombin 100.0 2.5E-31 8.7E-36 265.4 18.1 257 80-356 47-321 (324)
11 1v5w_A DMC1, meiotic recombina 100.0 2.9E-31 9.9E-36 267.1 17.4 251 86-356 68-340 (343)
12 2i1q_A DNA repair and recombin 100.0 7.7E-31 2.6E-35 261.1 16.9 258 78-355 36-321 (322)
13 2q6t_A DNAB replication FORK h 100.0 4E-27 1.4E-31 244.7 23.4 298 49-359 92-439 (444)
14 3lda_A DNA repair protein RAD5 100.0 1.2E-27 4.1E-32 245.1 17.8 254 83-356 121-394 (400)
15 1pzn_A RAD51, DNA repair and r 99.9 1.3E-27 4.3E-32 241.1 15.9 250 86-355 76-348 (349)
16 3bgw_A DNAB-like replicative h 99.9 4.7E-27 1.6E-31 244.1 19.0 295 48-358 91-435 (444)
17 2r6a_A DNAB helicase, replicat 99.9 1.6E-26 5.6E-31 240.7 21.1 298 48-360 94-441 (454)
18 1n0w_A DNA repair protein RAD5 99.9 3.5E-26 1.2E-30 216.3 20.9 218 122-356 3-240 (243)
19 2zts_A Putative uncharacterize 99.9 5.3E-25 1.8E-29 208.7 17.8 209 120-355 7-243 (251)
20 3bh0_A DNAB-like replicative h 99.9 5.7E-24 1.9E-28 211.4 20.9 237 90-355 29-303 (315)
21 2cvh_A DNA repair and recombin 99.9 7.3E-24 2.5E-28 197.3 19.4 206 124-355 1-217 (220)
22 4a1f_A DNAB helicase, replicat 99.9 9E-24 3.1E-28 211.6 20.6 246 91-359 4-316 (338)
23 2dr3_A UPF0273 protein PH0284; 99.9 1.4E-23 4.8E-28 198.6 19.3 204 122-356 2-233 (247)
24 4a74_A DNA repair and recombin 99.9 6.2E-23 2.1E-27 192.2 20.7 205 121-355 3-230 (231)
25 1q57_A DNA primase/helicase; d 99.9 5E-22 1.7E-26 209.2 20.3 219 121-360 220-482 (503)
26 2w0m_A SSO2452; RECA, SSPF, un 99.8 4.2E-20 1.4E-24 172.7 19.3 203 123-356 3-229 (235)
27 1nlf_A Regulatory protein REPA 99.8 7.9E-21 2.7E-25 184.9 12.9 217 122-355 10-260 (279)
28 2ehv_A Hypothetical protein PH 99.8 3E-19 1E-23 169.1 17.1 208 121-356 8-244 (251)
29 1cr0_A DNA primase/helicase; R 99.7 3.5E-17 1.2E-21 160.2 19.0 202 122-340 14-257 (296)
30 1tf7_A KAIC; homohexamer, hexa 99.7 6.2E-17 2.1E-21 171.3 19.6 206 121-355 259-478 (525)
31 3bs4_A Uncharacterized protein 99.6 1.9E-15 6.4E-20 145.9 14.1 73 124-196 2-76 (260)
32 1tf7_A KAIC; homohexamer, hexa 99.6 8.7E-14 3E-18 147.2 18.6 151 121-283 17-188 (525)
33 2vhj_A Ntpase P4, P4; non- hyd 99.5 5.5E-15 1.9E-19 146.2 5.4 130 124-280 105-236 (331)
34 3tui_C Methionine import ATP-b 99.5 8.1E-15 2.8E-19 147.9 3.7 251 139-402 50-360 (366)
35 3fvq_A Fe(3+) IONS import ATP- 99.4 4.4E-13 1.5E-17 135.0 9.8 154 139-301 26-220 (359)
36 3rlf_A Maltose/maltodextrin im 99.4 3.8E-13 1.3E-17 136.4 8.2 154 139-301 25-215 (381)
37 3tif_A Uncharacterized ABC tra 99.4 3.6E-12 1.2E-16 121.2 12.1 134 139-281 27-207 (235)
38 3d31_A Sulfate/molybdate ABC t 99.3 1.1E-12 3.6E-17 131.9 8.5 157 139-299 22-207 (348)
39 2yyz_A Sugar ABC transporter, 99.3 2E-12 6.9E-17 130.3 9.8 153 139-300 25-214 (359)
40 1z47_A CYSA, putative ABC-tran 99.3 1.4E-12 4.7E-17 131.3 8.0 158 139-300 37-226 (355)
41 2it1_A 362AA long hypothetical 99.3 1.9E-12 6.4E-17 130.7 8.9 158 139-300 25-214 (362)
42 1v43_A Sugar-binding transport 99.3 2.4E-12 8.3E-17 130.3 9.4 152 139-299 33-221 (372)
43 1g29_1 MALK, maltose transport 99.3 1.5E-12 5.1E-17 132.0 7.1 158 139-300 25-220 (372)
44 3gfo_A Cobalt import ATP-bindi 99.3 9.4E-12 3.2E-16 121.1 12.4 150 139-298 30-222 (275)
45 1oxx_K GLCV, glucose, ABC tran 99.3 1.5E-12 5E-17 131.2 6.4 152 139-299 27-220 (353)
46 1vpl_A ABC transporter, ATP-bi 99.3 4.6E-12 1.6E-16 122.0 9.6 146 139-288 37-214 (256)
47 2olj_A Amino acid ABC transpor 99.3 3.1E-12 1E-16 123.8 7.5 140 139-288 46-227 (263)
48 4g1u_C Hemin import ATP-bindin 99.3 9.2E-12 3.1E-16 120.6 10.9 153 139-300 33-228 (266)
49 1b0u_A Histidine permease; ABC 99.3 2.8E-12 9.6E-17 123.9 6.8 137 139-285 28-218 (262)
50 2pcj_A ABC transporter, lipopr 99.3 4E-12 1.4E-16 120.0 7.2 135 139-283 26-203 (224)
51 2onk_A Molybdate/tungstate ABC 99.3 1.9E-11 6.5E-16 116.6 11.4 137 139-285 21-192 (240)
52 1g6h_A High-affinity branched- 99.3 2.4E-11 8.3E-16 116.9 11.9 140 139-288 29-221 (257)
53 2yz2_A Putative ABC transporte 99.3 1.4E-11 4.8E-16 119.2 10.3 137 139-285 29-203 (266)
54 2ihy_A ABC transporter, ATP-bi 99.2 4.3E-11 1.5E-15 116.7 9.9 150 139-298 43-241 (279)
55 2ixe_A Antigen peptide transpo 99.2 1.7E-11 5.7E-16 119.1 6.8 140 139-283 41-220 (271)
56 1ji0_A ABC transporter; ATP bi 99.2 1.1E-11 3.6E-16 118.3 5.4 141 139-288 28-207 (240)
57 1sgw_A Putative ABC transporte 99.2 1.2E-11 4.1E-16 116.0 4.6 138 139-284 31-197 (214)
58 2d2e_A SUFC protein; ABC-ATPas 99.1 1.8E-10 6E-15 110.4 11.8 142 139-284 25-207 (250)
59 2ff7_A Alpha-hemolysin translo 99.1 8.9E-11 3E-15 112.4 9.3 68 139-208 31-101 (247)
60 2qi9_C Vitamin B12 import ATP- 99.1 1.3E-10 4.5E-15 111.4 9.5 66 139-206 22-90 (249)
61 2nq2_C Hypothetical ABC transp 99.1 1.7E-10 5.8E-15 110.8 9.8 37 139-176 27-63 (253)
62 2zu0_C Probable ATP-dependent 99.1 2.5E-10 8.5E-15 110.5 10.5 138 139-284 42-228 (267)
63 3nh6_A ATP-binding cassette SU 99.1 1.1E-10 3.9E-15 115.1 6.0 62 139-201 76-140 (306)
64 2ghi_A Transport protein; mult 99.0 4.7E-10 1.6E-14 108.1 8.5 67 139-208 42-111 (260)
65 2pjz_A Hypothetical protein ST 99.0 1.6E-09 5.6E-14 104.6 11.7 148 139-299 27-205 (263)
66 3gd7_A Fusion complex of cysti 99.0 3.7E-10 1.3E-14 115.0 7.2 150 139-300 43-233 (390)
67 1mv5_A LMRA, multidrug resista 99.0 1.4E-10 4.9E-15 110.6 3.8 61 139-200 24-87 (243)
68 2b8t_A Thymidine kinase; deoxy 98.9 8E-09 2.7E-13 97.3 12.2 123 141-288 10-134 (223)
69 3b60_A Lipid A export ATP-bind 98.9 3.7E-09 1.3E-13 113.1 10.1 63 139-202 365-430 (582)
70 2yl4_A ATP-binding cassette SU 98.9 1.9E-09 6.5E-14 115.6 7.8 62 139-201 366-430 (595)
71 3b5x_A Lipid A export ATP-bind 98.9 4.7E-09 1.6E-13 112.3 10.5 62 139-201 365-429 (582)
72 2pze_A Cystic fibrosis transme 98.9 3E-09 1E-13 100.5 7.3 40 139-179 30-69 (229)
73 3qf4_A ABC transporter, ATP-bi 98.8 2.8E-09 9.4E-14 114.2 6.4 62 139-201 365-429 (587)
74 3qf4_B Uncharacterized ABC tra 98.8 4E-09 1.4E-13 113.1 7.7 68 139-208 377-447 (598)
75 4a82_A Cystic fibrosis transme 98.8 4.1E-09 1.4E-13 112.6 7.4 63 139-202 363-428 (578)
76 2cbz_A Multidrug resistance-as 98.8 9.4E-09 3.2E-13 97.6 9.0 40 139-179 27-66 (237)
77 3ozx_A RNAse L inhibitor; ATP 98.8 6.2E-09 2.1E-13 110.3 8.0 39 140-179 291-329 (538)
78 3bk7_A ABC transporter ATP-bin 98.8 2.5E-09 8.5E-14 114.9 4.5 132 140-285 379-537 (607)
79 1yqt_A RNAse L inhibitor; ATP- 98.8 3.3E-09 1.1E-13 112.5 5.0 134 140-287 309-469 (538)
80 2bbs_A Cystic fibrosis transme 98.7 8.6E-09 3E-13 100.9 5.9 40 139-179 60-99 (290)
81 1rj9_A FTSY, signal recognitio 98.6 9.2E-08 3.1E-12 94.2 10.7 133 142-280 101-258 (304)
82 3g5u_A MCG1178, multidrug resi 98.6 3.4E-08 1.1E-12 114.6 7.9 62 139-201 1055-1119(1284)
83 3j16_B RLI1P; ribosome recycli 98.6 2.1E-08 7.2E-13 107.6 5.2 35 138-173 373-407 (608)
84 3g5u_A MCG1178, multidrug resi 98.6 4.9E-08 1.7E-12 113.2 7.2 157 139-302 412-606 (1284)
85 4f4c_A Multidrug resistance pr 98.5 1.3E-07 4.4E-12 110.0 8.4 61 139-200 1101-1164(1321)
86 1yqt_A RNAse L inhibitor; ATP- 98.5 5.8E-08 2E-12 102.9 4.8 35 139-174 43-77 (538)
87 3bk7_A ABC transporter ATP-bin 98.5 6.4E-08 2.2E-12 103.9 4.4 35 139-174 113-147 (607)
88 3b9q_A Chloroplast SRP recepto 98.5 2.7E-07 9.4E-12 90.7 8.4 44 140-184 97-140 (302)
89 2og2_A Putative signal recogni 98.4 5.2E-07 1.8E-11 90.8 9.9 44 140-184 154-197 (359)
90 3e70_C DPA, signal recognition 98.4 6.4E-07 2.2E-11 89.1 10.0 130 141-280 127-279 (328)
91 2yhs_A FTSY, cell division pro 98.4 9.2E-07 3.2E-11 92.2 11.2 90 140-234 290-388 (503)
92 4f4c_A Multidrug resistance pr 98.4 2.9E-07 9.8E-12 107.1 7.9 61 139-200 440-503 (1321)
93 4gp7_A Metallophosphoesterase; 98.4 4E-08 1.4E-12 88.2 0.5 22 140-162 6-27 (171)
94 3ec2_A DNA replication protein 98.4 5.9E-07 2E-11 80.6 7.8 110 139-281 34-144 (180)
95 2kjq_A DNAA-related protein; s 98.4 2.2E-06 7.5E-11 75.3 11.2 88 142-279 35-124 (149)
96 3ux8_A Excinuclease ABC, A sub 98.4 3.5E-07 1.2E-11 99.2 7.0 22 139-160 40-61 (670)
97 3ozx_A RNAse L inhibitor; ATP 98.4 4.1E-07 1.4E-11 96.3 7.2 35 140-175 22-56 (538)
98 3j16_B RLI1P; ribosome recycli 98.3 3.8E-07 1.3E-11 97.9 6.5 35 140-175 100-134 (608)
99 2orw_A Thymidine kinase; TMTK, 98.3 1.5E-06 5.3E-11 79.0 8.6 110 142-281 2-114 (184)
100 2eyu_A Twitching motility prot 98.3 5E-06 1.7E-10 79.9 12.1 47 130-180 15-62 (261)
101 3jvv_A Twitching mobility prot 98.2 2.5E-06 8.5E-11 85.7 8.8 114 140-283 120-234 (356)
102 3b85_A Phosphate starvation-in 98.2 1.9E-07 6.5E-12 86.9 0.1 55 140-197 19-74 (208)
103 1oft_A SULA, hypothetical prot 98.2 2.1E-05 7.3E-10 69.8 12.8 132 123-276 23-158 (161)
104 2dpy_A FLII, flagellum-specifi 98.2 6.8E-07 2.3E-11 92.3 3.4 54 124-180 140-193 (438)
105 1c9k_A COBU, adenosylcobinamid 98.2 2.1E-06 7.2E-11 78.0 6.1 124 145-278 1-134 (180)
106 2iw3_A Elongation factor 3A; a 98.1 4.3E-06 1.5E-10 93.7 9.5 39 140-179 696-734 (986)
107 1xx6_A Thymidine kinase; NESG, 98.1 1.5E-05 5.3E-10 73.0 11.4 117 141-287 6-125 (191)
108 2iw3_A Elongation factor 3A; a 98.1 5.9E-06 2E-10 92.6 9.9 27 139-166 457-483 (986)
109 2pt7_A CAG-ALFA; ATPase, prote 98.1 3.4E-06 1.2E-10 83.8 6.2 83 140-232 168-251 (330)
110 2npi_A Protein CLP1; CLP1-PCF1 98.0 3.2E-06 1.1E-10 87.8 5.6 39 140-179 135-175 (460)
111 2j9r_A Thymidine kinase; TK1, 98.0 1.8E-05 6.3E-10 73.7 9.1 118 141-288 26-146 (214)
112 3ux8_A Excinuclease ABC, A sub 98.0 1.1E-05 3.7E-10 87.5 8.3 23 140-163 345-367 (670)
113 1j8m_F SRP54, signal recogniti 97.9 0.0001 3.4E-09 72.1 13.2 107 124-233 72-192 (297)
114 2orv_A Thymidine kinase; TP4A 97.9 0.0001 3.4E-09 69.4 12.3 116 142-289 18-135 (234)
115 1ye8_A Protein THEP1, hypothet 97.9 1.8E-05 6.3E-10 71.5 6.7 24 145-169 2-25 (178)
116 4b4t_L 26S protease subunit RP 97.9 0.0001 3.4E-09 75.9 12.7 125 138-284 210-334 (437)
117 2ewv_A Twitching motility prot 97.8 2.9E-05 9.8E-10 78.4 8.2 112 140-281 133-245 (372)
118 1fnn_A CDC6P, cell division co 97.8 0.00022 7.5E-09 70.8 14.6 85 145-233 46-137 (389)
119 4b4t_K 26S protease regulatory 97.8 8E-05 2.7E-09 76.5 11.5 124 139-284 202-325 (428)
120 3h4m_A Proteasome-activating n 97.8 8.9E-05 3E-09 70.9 11.2 78 139-235 47-124 (285)
121 1htw_A HI0065; nucleotide-bind 97.8 8E-06 2.7E-10 72.5 3.3 41 139-181 29-69 (158)
122 2i3b_A HCR-ntpase, human cance 97.8 3.4E-06 1.2E-10 77.2 0.8 51 143-196 1-52 (189)
123 4b4t_J 26S protease regulatory 97.8 0.00012 4.1E-09 74.5 12.0 125 138-284 177-301 (405)
124 4b4t_I 26S protease regulatory 97.8 0.00014 4.6E-09 74.5 12.3 125 138-284 211-335 (437)
125 4aby_A DNA repair protein RECN 97.8 7.1E-05 2.4E-09 75.8 10.2 28 139-168 57-84 (415)
126 3bos_A Putative DNA replicatio 97.8 7.8E-05 2.7E-09 68.6 9.6 49 131-181 42-90 (242)
127 1w4r_A Thymidine kinase; type 97.8 0.00013 4.3E-09 67.0 10.4 115 142-288 19-135 (195)
128 3thx_B DNA mismatch repair pro 97.7 3.1E-05 1.1E-09 86.5 7.2 28 139-167 669-696 (918)
129 1zp6_A Hypothetical protein AT 97.7 1.9E-05 6.3E-10 71.0 4.3 40 139-181 5-44 (191)
130 2obl_A ESCN; ATPase, hydrolase 97.7 2.3E-05 7.8E-10 78.4 5.3 55 124-181 54-108 (347)
131 2qby_A CDC6 homolog 1, cell di 97.7 8.1E-05 2.8E-09 73.6 9.2 90 141-234 43-141 (386)
132 1sxj_E Activator 1 40 kDa subu 97.7 0.00017 5.8E-09 71.1 11.4 35 146-181 39-74 (354)
133 1vma_A Cell division protein F 97.7 0.00048 1.6E-08 67.6 14.1 88 141-232 102-197 (306)
134 4b4t_M 26S protease regulatory 97.7 0.00013 4.5E-09 75.0 10.2 125 138-284 210-334 (434)
135 2gza_A Type IV secretion syste 97.7 4.7E-05 1.6E-09 76.4 6.6 41 139-180 171-211 (361)
136 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.00027 9.4E-09 69.6 11.9 80 138-235 40-119 (322)
137 1ewq_A DNA mismatch repair pro 97.7 6.7E-05 2.3E-09 82.4 8.1 26 143-169 576-601 (765)
138 3kl4_A SRP54, signal recogniti 97.7 0.00037 1.3E-08 71.6 13.2 101 130-233 77-191 (433)
139 2qm8_A GTPase/ATPase; G protei 97.7 4.2E-05 1.4E-09 76.1 5.9 100 131-233 44-159 (337)
140 2vf7_A UVRA2, excinuclease ABC 97.7 6.1E-05 2.1E-09 83.4 7.8 29 139-168 519-548 (842)
141 3e2i_A Thymidine kinase; Zn-bi 97.6 0.00019 6.6E-09 66.8 9.8 119 140-288 25-146 (219)
142 3thx_A DNA mismatch repair pro 97.6 0.00022 7.6E-09 79.8 12.1 25 139-164 658-682 (934)
143 3dm5_A SRP54, signal recogniti 97.6 0.00092 3.1E-08 68.8 15.7 90 142-234 99-195 (443)
144 1wb9_A DNA mismatch repair pro 97.6 0.00013 4.3E-09 80.6 9.9 27 141-168 605-631 (800)
145 3pih_A Uvrabc system protein A 97.6 0.00016 5.5E-09 80.7 10.6 22 140-161 607-628 (916)
146 2o8b_B DNA mismatch repair pro 97.6 0.00024 8.2E-09 80.4 12.0 25 143-169 789-813 (1022)
147 4b4t_H 26S protease regulatory 97.6 0.00032 1.1E-08 72.4 11.7 124 138-283 238-361 (467)
148 2r6f_A Excinuclease ABC subuni 97.6 0.00019 6.4E-09 80.2 10.6 25 140-164 647-671 (972)
149 2v1u_A Cell division control p 97.6 0.00023 7.8E-09 70.4 10.1 90 141-234 42-143 (387)
150 2ygr_A Uvrabc system protein A 97.5 0.00024 8.3E-09 79.5 10.1 26 139-164 664-689 (993)
151 1sq5_A Pantothenate kinase; P- 97.5 0.00014 4.8E-09 71.2 7.4 74 140-216 77-155 (308)
152 2x8a_A Nuclear valosin-contain 97.5 0.00025 8.6E-09 68.3 8.8 38 139-181 42-79 (274)
153 2px0_A Flagellar biosynthesis 97.5 0.00058 2E-08 66.6 11.3 81 141-230 103-191 (296)
154 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00069 2.4E-08 63.5 11.3 78 139-235 35-112 (262)
155 1jbk_A CLPB protein; beta barr 97.4 0.00053 1.8E-08 60.2 9.4 77 142-235 42-129 (195)
156 1lw7_A Transcriptional regulat 97.4 0.00017 5.7E-09 72.2 6.7 39 138-177 163-207 (365)
157 3cf0_A Transitional endoplasmi 97.4 8.9E-05 3E-09 72.2 4.6 123 138-283 44-167 (301)
158 1lv7_A FTSH; alpha/beta domain 97.4 0.00097 3.3E-08 62.8 11.6 72 145-235 47-118 (257)
159 2w58_A DNAI, primosome compone 97.4 0.00028 9.5E-09 63.9 7.4 37 144-180 55-91 (202)
160 1znw_A Guanylate kinase, GMP k 97.4 8.8E-05 3E-09 68.0 4.1 30 139-169 16-45 (207)
161 3t15_A Ribulose bisphosphate c 97.4 0.00022 7.6E-09 69.2 7.1 83 138-235 31-113 (293)
162 1e69_A Chromosome segregation 97.4 0.0012 4E-08 64.9 12.3 26 140-167 22-47 (322)
163 1l8q_A Chromosomal replication 97.4 0.00068 2.3E-08 66.2 10.4 40 141-180 35-74 (324)
164 2r8r_A Sensor protein; KDPD, P 97.4 0.0026 8.9E-08 59.6 13.8 45 141-185 3-48 (228)
165 1z6g_A Guanylate kinase; struc 97.4 8E-05 2.7E-09 69.2 3.4 35 139-177 19-53 (218)
166 3szr_A Interferon-induced GTP- 97.4 7.9E-05 2.7E-09 79.9 3.7 66 146-212 48-120 (608)
167 1zu4_A FTSY; GTPase, signal re 97.4 0.00096 3.3E-08 65.8 11.2 41 140-180 102-142 (320)
168 2ce7_A Cell division protein F 97.4 0.0018 6.2E-08 67.3 13.7 121 139-283 47-167 (476)
169 2ffh_A Protein (FFH); SRP54, s 97.3 0.0029 9.9E-08 64.8 14.8 87 142-233 97-192 (425)
170 3sop_A Neuronal-specific septi 97.3 9.3E-05 3.2E-09 71.3 3.5 51 145-196 4-54 (270)
171 3b9p_A CG5977-PA, isoform A; A 97.3 0.0024 8.3E-08 61.2 13.4 76 141-235 52-127 (297)
172 3eie_A Vacuolar protein sortin 97.3 0.00055 1.9E-08 67.1 8.6 79 138-235 46-124 (322)
173 3c8u_A Fructokinase; YP_612366 97.3 0.00013 4.6E-09 66.8 3.7 30 140-170 19-48 (208)
174 1s96_A Guanylate kinase, GMP k 97.3 0.0001 3.5E-09 68.8 2.9 42 138-180 11-54 (219)
175 2qp9_X Vacuolar protein sortin 97.3 0.00073 2.5E-08 67.4 9.2 79 138-235 79-157 (355)
176 2chg_A Replication factor C sm 97.2 0.0051 1.7E-07 55.1 13.9 24 146-169 41-64 (226)
177 3tr0_A Guanylate kinase, GMP k 97.2 0.00018 6.3E-09 65.0 4.2 36 140-180 4-39 (205)
178 2p65_A Hypothetical protein PF 97.2 0.00037 1.3E-08 61.2 5.9 28 142-169 42-69 (187)
179 2v9p_A Replication protein E1; 97.2 0.00027 9.1E-09 69.4 5.3 43 130-177 114-156 (305)
180 4eun_A Thermoresistant glucoki 97.2 0.00023 7.7E-09 64.8 4.4 38 141-183 27-64 (200)
181 4fcw_A Chaperone protein CLPB; 97.2 0.0022 7.6E-08 61.7 11.1 85 143-234 47-132 (311)
182 2v3c_C SRP54, signal recogniti 97.1 0.00049 1.7E-08 70.7 6.6 51 131-181 80-137 (432)
183 3aez_A Pantothenate kinase; tr 97.1 0.0004 1.4E-08 68.3 5.5 31 140-171 87-117 (312)
184 3syl_A Protein CBBX; photosynt 97.1 0.0038 1.3E-07 60.0 12.4 40 141-180 65-108 (309)
185 3asz_A Uridine kinase; cytidin 97.1 0.00035 1.2E-08 63.7 4.8 37 141-180 4-40 (211)
186 1ls1_A Signal recognition part 97.1 0.0017 5.8E-08 63.2 9.6 90 142-233 97-192 (295)
187 2z4s_A Chromosomal replication 97.1 0.0024 8.3E-08 65.6 11.2 39 143-181 130-170 (440)
188 2xxa_A Signal recognition part 97.1 0.0073 2.5E-07 62.0 14.7 85 143-233 100-195 (433)
189 3uie_A Adenylyl-sulfate kinase 97.1 0.00045 1.5E-08 62.8 5.1 39 141-180 23-62 (200)
190 1kgd_A CASK, peripheral plasma 97.1 0.00036 1.2E-08 62.5 4.2 29 139-168 1-29 (180)
191 2j37_W Signal recognition part 97.1 0.0064 2.2E-07 63.6 14.2 101 130-234 81-196 (504)
192 3euj_A Chromosome partition pr 97.1 0.00026 8.8E-09 73.7 3.5 42 139-182 26-67 (483)
193 3ice_A Transcription terminati 97.1 0.0012 4E-08 66.8 8.1 106 123-234 156-274 (422)
194 1ixz_A ATP-dependent metallopr 97.0 0.00071 2.4E-08 63.6 6.2 36 139-179 47-82 (254)
195 1lvg_A Guanylate kinase, GMP k 97.0 0.00028 9.6E-09 64.4 3.3 29 140-169 1-29 (198)
196 3cf2_A TER ATPase, transitiona 97.0 0.0015 5E-08 72.1 9.2 122 138-284 233-354 (806)
197 3te6_A Regulatory protein SIR3 97.0 0.0052 1.8E-07 60.5 12.3 98 130-234 34-145 (318)
198 1ypw_A Transitional endoplasmi 97.0 0.0014 4.9E-08 72.5 9.0 119 139-283 234-353 (806)
199 1njg_A DNA polymerase III subu 97.0 0.0013 4.5E-08 59.7 7.2 25 144-168 46-70 (250)
200 1g5t_A COB(I)alamin adenosyltr 97.0 0.0022 7.5E-08 58.8 8.6 92 142-234 28-133 (196)
201 2oap_1 GSPE-2, type II secreti 97.0 0.00037 1.3E-08 73.2 3.9 40 140-180 257-296 (511)
202 3end_A Light-independent proto 97.0 0.0016 5.4E-08 63.1 8.1 61 121-181 14-79 (307)
203 2bdt_A BH3686; alpha-beta prot 97.0 0.0004 1.4E-08 62.2 3.4 34 143-180 2-35 (189)
204 2rcn_A Probable GTPase ENGC; Y 96.9 0.00032 1.1E-08 70.3 3.0 46 127-178 204-250 (358)
205 1w5s_A Origin recognition comp 96.9 0.0027 9.2E-08 63.4 9.7 89 142-234 49-151 (412)
206 4dzz_A Plasmid partitioning pr 96.9 0.0035 1.2E-07 56.4 9.5 84 145-233 3-87 (206)
207 1knq_A Gluconate kinase; ALFA/ 96.9 0.0006 2E-08 60.2 4.1 38 141-183 6-43 (175)
208 2pez_A Bifunctional 3'-phospho 96.9 0.00094 3.2E-08 59.3 5.4 39 141-180 3-42 (179)
209 2zan_A Vacuolar protein sortin 96.9 0.00084 2.9E-08 69.1 5.7 80 138-235 162-241 (444)
210 2j41_A Guanylate kinase; GMP, 96.9 0.0006 2.1E-08 61.6 4.1 30 140-170 3-32 (207)
211 1sxj_B Activator 1 37 kDa subu 96.9 0.0094 3.2E-07 57.2 12.6 81 131-234 32-120 (323)
212 2jeo_A Uridine-cytidine kinase 96.9 0.00059 2E-08 64.2 3.9 29 139-168 21-49 (245)
213 1p9r_A General secretion pathw 96.9 0.00069 2.4E-08 69.3 4.6 46 131-180 158-203 (418)
214 3a00_A Guanylate kinase, GMP k 96.8 0.00041 1.4E-08 62.4 2.5 26 143-169 1-26 (186)
215 2qby_B CDC6 homolog 3, cell di 96.8 0.0014 4.7E-08 65.0 6.6 87 143-234 45-146 (384)
216 1iy2_A ATP-dependent metallopr 96.8 0.0013 4.3E-08 62.9 6.0 36 139-179 71-106 (278)
217 1sxj_A Activator 1 95 kDa subu 96.8 0.0047 1.6E-07 64.7 10.8 113 141-280 75-189 (516)
218 3vfd_A Spastin; ATPase, microt 96.8 0.0083 2.8E-07 60.2 12.3 76 141-235 146-221 (389)
219 3d8b_A Fidgetin-like protein 1 96.8 0.0059 2E-07 60.7 10.9 76 141-235 115-190 (357)
220 3lnc_A Guanylate kinase, GMP k 96.8 0.00037 1.3E-08 64.8 2.0 28 140-168 24-52 (231)
221 4a8j_A Elongator complex prote 96.8 0.0006 2E-08 68.0 3.2 42 123-167 19-65 (361)
222 2qen_A Walker-type ATPase; unk 96.8 0.0035 1.2E-07 60.9 8.6 87 143-234 31-141 (350)
223 2yvu_A Probable adenylyl-sulfa 96.8 0.0015 5.1E-08 58.3 5.5 48 131-180 3-50 (186)
224 3hu3_A Transitional endoplasmi 96.7 0.0037 1.3E-07 65.2 9.1 119 139-282 234-352 (489)
225 3uk6_A RUVB-like 2; hexameric 96.7 0.0079 2.7E-07 59.3 11.1 42 137-179 64-105 (368)
226 3n70_A Transport activator; si 96.7 0.0024 8.3E-08 54.9 6.4 38 142-180 23-60 (145)
227 1rz3_A Hypothetical protein rb 96.7 0.002 7E-08 58.5 6.3 40 139-179 18-58 (201)
228 2yv5_A YJEQ protein; hydrolase 96.7 0.001 3.5E-08 64.9 4.2 49 127-182 154-205 (302)
229 2ck3_A ATP synthase subunit al 96.7 0.0042 1.4E-07 64.7 9.0 111 122-234 143-275 (510)
230 1u0l_A Probable GTPase ENGC; p 96.6 0.0011 3.8E-08 64.5 4.0 50 127-182 158-210 (301)
231 2r9v_A ATP synthase subunit al 96.6 0.0028 9.7E-08 65.9 7.1 111 122-234 156-280 (515)
232 2qe7_A ATP synthase subunit al 96.6 0.0032 1.1E-07 65.4 7.6 111 122-234 143-267 (502)
233 1tue_A Replication protein E1; 96.6 0.0013 4.5E-08 60.8 4.0 38 129-167 45-82 (212)
234 3tau_A Guanylate kinase, GMP k 96.6 0.0014 4.6E-08 60.1 4.0 27 141-168 6-32 (208)
235 1sxj_C Activator 1 40 kDa subu 96.6 0.0075 2.6E-07 59.2 9.6 22 146-167 49-70 (340)
236 3bfv_A CAPA1, CAPB2, membrane 96.6 0.04 1.4E-06 52.6 14.5 41 142-182 81-122 (271)
237 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0039 1.3E-07 65.2 7.8 38 139-181 62-99 (499)
238 1sky_E F1-ATPase, F1-ATP synth 96.6 0.0029 9.8E-08 65.5 6.7 55 121-177 131-186 (473)
239 3oaa_A ATP synthase subunit al 96.6 0.0047 1.6E-07 64.1 8.3 112 121-234 142-267 (513)
240 1tq4_A IIGP1, interferon-induc 96.6 0.00035 1.2E-08 71.3 -0.2 38 142-180 68-105 (413)
241 3la6_A Tyrosine-protein kinase 96.5 0.046 1.6E-06 52.7 14.8 41 142-182 91-132 (286)
242 2vp4_A Deoxynucleoside kinase; 96.5 0.001 3.5E-08 62.0 2.8 38 138-180 15-52 (230)
243 3kta_A Chromosome segregation 96.5 0.0019 6.4E-08 57.3 4.3 28 140-169 24-51 (182)
244 3u61_B DNA polymerase accessor 96.5 0.031 1E-06 54.2 13.2 66 144-234 49-118 (324)
245 1ofu_X SULA, hypothetical prot 96.5 0.055 1.9E-06 45.4 12.9 112 143-276 2-116 (119)
246 2rhm_A Putative kinase; P-loop 96.5 0.0018 6.3E-08 57.6 4.0 28 139-166 1-28 (193)
247 2f1r_A Molybdopterin-guanine d 96.5 0.00098 3.4E-08 59.7 2.2 37 144-181 3-42 (171)
248 1fx0_A ATP synthase alpha chai 96.5 0.003 1E-07 65.8 6.0 111 122-234 144-268 (507)
249 2www_A Methylmalonic aciduria 96.5 0.0043 1.5E-07 61.8 7.0 37 141-178 72-109 (349)
250 1kag_A SKI, shikimate kinase I 96.4 0.0018 6.2E-08 56.7 3.7 33 142-179 3-35 (173)
251 3fkq_A NTRC-like two-domain pr 96.4 0.015 5.2E-07 58.1 11.0 40 141-180 141-181 (373)
252 1ypw_A Transitional endoplasmi 96.4 0.0008 2.7E-08 74.5 1.3 124 138-283 506-629 (806)
253 1d2n_A N-ethylmaleimide-sensit 96.4 0.011 3.9E-07 55.9 9.2 38 139-179 60-97 (272)
254 1m7g_A Adenylylsulfate kinase; 96.4 0.0036 1.2E-07 57.2 5.4 40 140-180 22-63 (211)
255 3vaa_A Shikimate kinase, SK; s 96.3 0.0025 8.6E-08 57.7 4.2 27 140-166 22-48 (199)
256 2ck3_D ATP synthase subunit be 96.3 0.012 4E-07 61.0 9.5 55 121-177 133-188 (482)
257 2qt1_A Nicotinamide riboside k 96.3 0.0022 7.6E-08 58.2 3.7 39 138-180 16-54 (207)
258 3cio_A ETK, tyrosine-protein k 96.3 0.014 4.6E-07 56.8 9.6 40 142-181 103-143 (299)
259 1wcv_1 SOJ, segregation protei 96.3 0.012 4.2E-07 55.3 9.0 40 142-181 5-45 (257)
260 3l0o_A Transcription terminati 96.3 0.011 3.8E-07 59.7 9.0 106 123-234 157-275 (427)
261 1z6t_A APAF-1, apoptotic prote 96.3 0.0059 2E-07 64.4 7.2 101 130-231 134-246 (591)
262 1sxj_D Activator 1 41 kDa subu 96.2 0.024 8.1E-07 55.2 11.0 50 129-180 46-98 (353)
263 4e22_A Cytidylate kinase; P-lo 96.2 0.00066 2.3E-08 64.3 -0.5 26 141-167 25-50 (252)
264 1gvn_B Zeta; postsegregational 96.2 0.005 1.7E-07 59.5 5.7 35 142-179 32-66 (287)
265 3zq6_A Putative arsenical pump 96.2 0.016 5.6E-07 56.7 9.5 38 144-181 15-52 (324)
266 3iqw_A Tail-anchored protein t 96.2 0.027 9.3E-07 55.6 11.1 49 131-181 6-54 (334)
267 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0052 1.8E-07 58.3 5.6 38 142-179 3-40 (260)
268 3cr8_A Sulfate adenylyltranfer 96.2 0.0029 9.8E-08 67.0 4.1 40 140-180 366-407 (552)
269 1svm_A Large T antigen; AAA+ f 96.1 0.0035 1.2E-07 63.2 4.3 30 138-168 164-193 (377)
270 3cf2_A TER ATPase, transitiona 96.1 0.0031 1.1E-07 69.4 4.0 124 138-283 506-629 (806)
271 3tqc_A Pantothenate kinase; bi 96.0 0.014 4.8E-07 57.5 8.2 36 145-181 94-132 (321)
272 3q9l_A Septum site-determining 96.0 0.043 1.5E-06 51.0 11.3 39 143-181 2-41 (260)
273 1kht_A Adenylate kinase; phosp 96.0 0.0059 2E-07 54.0 5.0 26 143-168 3-28 (192)
274 2a5y_B CED-4; apoptosis; HET: 96.0 0.015 5.1E-07 61.2 8.8 92 141-232 150-254 (549)
275 1t9h_A YLOQ, probable GTPase E 96.0 0.00095 3.2E-08 65.5 -0.4 37 140-177 170-206 (307)
276 3p32_A Probable GTPase RV1496/ 96.0 0.021 7E-07 56.8 9.4 40 142-181 78-117 (355)
277 2qag_B Septin-6, protein NEDD5 96.0 0.0027 9.2E-08 65.0 2.8 34 132-167 30-65 (427)
278 1fx0_B ATP synthase beta chain 96.0 0.019 6.5E-07 59.6 9.2 55 122-178 146-201 (498)
279 2qor_A Guanylate kinase; phosp 96.0 0.0037 1.3E-07 56.8 3.5 26 140-165 9-34 (204)
280 2p67_A LAO/AO transport system 96.0 0.02 6.9E-07 56.6 9.1 41 140-180 53-93 (341)
281 1nks_A Adenylate kinase; therm 96.0 0.0068 2.3E-07 53.6 5.1 34 145-178 3-36 (194)
282 1qhl_A Protein (cell division 96.0 0.0005 1.7E-08 64.5 -2.6 36 144-180 28-63 (227)
283 1jr3_A DNA polymerase III subu 95.9 0.033 1.1E-06 54.7 10.5 24 144-167 39-62 (373)
284 3ug7_A Arsenical pump-driving 95.9 0.038 1.3E-06 54.7 10.8 53 139-193 22-74 (349)
285 2plr_A DTMP kinase, probable t 95.9 0.0077 2.6E-07 54.2 5.2 35 142-177 3-37 (213)
286 2ius_A DNA translocase FTSK; n 95.9 0.029 1E-06 58.6 10.3 44 224-281 300-343 (512)
287 1iqp_A RFCS; clamp loader, ext 95.9 0.021 7E-07 54.9 8.5 23 146-168 49-71 (327)
288 3co5_A Putative two-component 95.9 0.0054 1.8E-07 52.6 3.8 19 143-161 27-45 (143)
289 3ney_A 55 kDa erythrocyte memb 95.9 0.0053 1.8E-07 56.3 4.0 26 142-168 18-43 (197)
290 3zvl_A Bifunctional polynucleo 95.9 0.023 7.8E-07 57.8 9.1 34 142-180 257-290 (416)
291 2gno_A DNA polymerase III, gam 95.8 0.099 3.4E-06 50.8 13.2 82 131-234 8-95 (305)
292 1a5t_A Delta prime, HOLB; zinc 95.8 0.026 8.9E-07 55.4 9.1 85 144-234 25-121 (334)
293 1xjc_A MOBB protein homolog; s 95.8 0.011 3.8E-07 52.8 5.7 37 144-180 5-41 (169)
294 3kjh_A CO dehydrogenase/acetyl 95.8 0.013 4.3E-07 54.1 6.4 37 146-182 3-39 (254)
295 3pxi_A Negative regulator of g 95.8 0.026 8.9E-07 61.7 9.9 70 145-234 523-592 (758)
296 2bbw_A Adenylate kinase 4, AK4 95.8 0.0053 1.8E-07 57.5 3.7 23 142-165 26-48 (246)
297 3t61_A Gluconokinase; PSI-biol 95.8 0.005 1.7E-07 55.6 3.4 36 143-183 18-53 (202)
298 1nn5_A Similar to deoxythymidy 95.8 0.011 3.9E-07 53.3 5.8 37 141-177 7-43 (215)
299 4eaq_A DTMP kinase, thymidylat 95.8 0.011 3.9E-07 55.0 5.8 41 138-180 21-61 (229)
300 1qvr_A CLPB protein; coiled co 95.7 0.028 9.6E-07 62.4 9.7 77 145-235 193-277 (854)
301 3e1s_A Exodeoxyribonuclease V, 95.7 0.014 4.8E-07 62.0 7.0 38 142-179 203-240 (574)
302 1qhx_A CPT, protein (chloramph 95.7 0.0068 2.3E-07 53.3 3.8 24 143-166 3-26 (178)
303 3cm0_A Adenylate kinase; ATP-b 95.7 0.0056 1.9E-07 54.2 3.3 25 141-165 2-26 (186)
304 1np6_A Molybdopterin-guanine d 95.7 0.014 4.6E-07 52.3 5.8 39 140-178 3-41 (174)
305 2fna_A Conserved hypothetical 95.7 0.043 1.5E-06 53.1 9.8 45 131-181 21-65 (357)
306 3pvs_A Replication-associated 95.7 0.051 1.7E-06 55.8 10.8 69 144-234 51-119 (447)
307 2qgz_A Helicase loader, putati 95.7 0.012 4.1E-07 57.4 5.8 38 143-180 152-190 (308)
308 1ly1_A Polynucleotide kinase; 95.6 0.011 3.7E-07 51.8 4.9 32 144-179 3-34 (181)
309 2woj_A ATPase GET3; tail-ancho 95.6 0.039 1.3E-06 54.9 9.5 51 130-182 7-59 (354)
310 1qvr_A CLPB protein; coiled co 95.6 0.038 1.3E-06 61.3 10.4 84 144-234 589-673 (854)
311 3pfi_A Holliday junction ATP-d 95.6 0.081 2.8E-06 51.4 11.6 63 145-234 57-119 (338)
312 2chq_A Replication factor C sm 95.6 0.019 6.6E-07 54.9 6.9 23 146-168 41-63 (319)
313 3kb2_A SPBC2 prophage-derived 95.6 0.0085 2.9E-07 52.0 3.9 22 144-165 2-23 (173)
314 3umf_A Adenylate kinase; rossm 95.5 0.0089 3.1E-07 55.5 4.1 48 124-180 14-61 (217)
315 2wwf_A Thymidilate kinase, put 95.5 0.015 5.2E-07 52.4 5.6 36 140-175 7-42 (212)
316 1nij_A Hypothetical protein YJ 95.5 0.0032 1.1E-07 61.7 1.0 24 144-168 5-28 (318)
317 2p5t_B PEZT; postsegregational 95.4 0.0067 2.3E-07 57.2 3.0 38 141-181 30-67 (253)
318 1hqc_A RUVB; extended AAA-ATPa 95.4 0.084 2.9E-06 50.7 10.9 35 143-180 38-72 (324)
319 3lw7_A Adenylate kinase relate 95.4 0.0078 2.7E-07 52.0 3.1 20 144-163 2-21 (179)
320 2pbr_A DTMP kinase, thymidylat 95.4 0.017 5.8E-07 51.1 5.4 34 145-178 2-35 (195)
321 3trf_A Shikimate kinase, SK; a 95.4 0.011 3.7E-07 52.3 4.1 26 142-167 4-29 (185)
322 1cke_A CK, MSSA, protein (cyti 95.4 0.011 3.8E-07 54.0 4.3 25 143-168 5-29 (227)
323 1y63_A LMAJ004144AAA protein; 95.4 0.012 4E-07 52.6 4.3 36 140-179 7-42 (184)
324 2axn_A 6-phosphofructo-2-kinas 95.4 0.13 4.3E-06 54.0 12.8 37 143-179 35-71 (520)
325 1yrb_A ATP(GTP)binding protein 95.4 0.017 5.9E-07 53.9 5.6 40 142-182 13-52 (262)
326 2c95_A Adenylate kinase 1; tra 95.3 0.012 4E-07 52.4 4.1 26 141-166 7-32 (196)
327 2dy1_A Elongation factor G; tr 95.3 0.038 1.3E-06 59.7 8.9 28 140-168 6-33 (665)
328 2z0h_A DTMP kinase, thymidylat 95.3 0.019 6.3E-07 51.1 5.4 33 145-177 2-34 (197)
329 1tev_A UMP-CMP kinase; ploop, 95.3 0.01 3.5E-07 52.5 3.7 24 143-166 3-26 (196)
330 1ihu_A Arsenical pump-driving 95.3 0.016 5.4E-07 61.5 5.6 95 88-182 249-366 (589)
331 3iij_A Coilin-interacting nucl 95.2 0.012 4.2E-07 51.9 3.9 25 141-165 9-33 (180)
332 3qf7_A RAD50; ABC-ATPase, ATPa 95.2 0.01 3.6E-07 59.3 3.7 26 141-168 22-47 (365)
333 3igf_A ALL4481 protein; two-do 95.2 0.03 1E-06 56.2 7.2 36 144-179 3-38 (374)
334 2ze6_A Isopentenyl transferase 95.2 0.011 3.9E-07 55.8 3.8 24 144-167 2-25 (253)
335 1pui_A ENGB, probable GTP-bind 95.2 0.0028 9.5E-08 57.1 -0.5 28 139-167 22-49 (210)
336 1ojl_A Transcriptional regulat 95.2 0.05 1.7E-06 52.8 8.5 43 141-183 23-65 (304)
337 1w1w_A Structural maintenance 95.2 0.013 4.4E-07 59.7 4.4 30 140-170 23-52 (430)
338 1r6b_X CLPA protein; AAA+, N-t 95.2 0.064 2.2E-06 58.5 10.2 80 145-234 490-570 (758)
339 2v54_A DTMP kinase, thymidylat 95.1 0.016 5.5E-07 51.9 4.2 25 141-165 2-26 (204)
340 1aky_A Adenylate kinase; ATP:A 95.0 0.016 5.5E-07 53.0 4.2 25 142-166 3-27 (220)
341 2vli_A Antibiotic resistance p 95.0 0.011 3.7E-07 52.1 2.9 23 142-164 4-26 (183)
342 2o5v_A DNA replication and rep 95.0 0.013 4.6E-07 58.5 3.7 26 140-167 24-49 (359)
343 1in4_A RUVB, holliday junction 95.0 0.014 4.8E-07 57.4 3.8 24 144-168 52-75 (334)
344 2r2a_A Uncharacterized protein 95.0 0.021 7.1E-07 52.2 4.7 25 144-168 6-30 (199)
345 2cdn_A Adenylate kinase; phosp 95.0 0.018 6.3E-07 51.7 4.3 25 142-166 19-43 (201)
346 1zd8_A GTP:AMP phosphotransfer 94.9 0.015 5E-07 53.6 3.5 27 139-165 3-29 (227)
347 2bwj_A Adenylate kinase 5; pho 94.9 0.018 6E-07 51.3 3.8 25 142-166 11-35 (199)
348 3mfy_A V-type ATP synthase alp 94.9 0.12 4.1E-06 54.4 10.5 56 122-181 208-263 (588)
349 2iut_A DNA translocase FTSK; n 94.8 0.063 2.2E-06 56.8 8.5 44 224-281 346-389 (574)
350 4ag6_A VIRB4 ATPase, type IV s 94.8 0.031 1.1E-06 56.0 5.9 44 140-183 32-75 (392)
351 1a7j_A Phosphoribulokinase; tr 94.8 0.016 5.6E-07 56.0 3.7 42 142-183 4-45 (290)
352 1odf_A YGR205W, hypothetical 3 94.8 0.017 5.9E-07 55.9 3.8 30 139-169 27-56 (290)
353 1gtv_A TMK, thymidylate kinase 94.8 0.01 3.4E-07 53.7 2.0 33 145-177 2-34 (214)
354 3sr0_A Adenylate kinase; phosp 94.7 0.019 6.6E-07 52.7 3.8 32 145-181 2-33 (206)
355 1jjv_A Dephospho-COA kinase; P 94.7 0.015 5.1E-07 52.5 3.0 29 145-179 4-32 (206)
356 1f2t_A RAD50 ABC-ATPase; DNA d 94.7 0.02 7E-07 49.6 3.7 23 145-168 25-47 (149)
357 2qmh_A HPR kinase/phosphorylas 94.7 0.015 5.3E-07 53.4 3.0 25 142-166 33-57 (205)
358 3nwj_A ATSK2; P loop, shikimat 94.7 0.014 4.9E-07 55.3 2.8 36 139-179 41-79 (250)
359 1uj2_A Uridine-cytidine kinase 94.6 0.026 8.9E-07 52.9 4.5 38 144-181 23-65 (252)
360 3fwy_A Light-independent proto 94.6 0.032 1.1E-06 54.6 5.3 43 139-181 44-86 (314)
361 1ni3_A YCHF GTPase, YCHF GTP-b 94.6 0.023 7.9E-07 57.4 4.4 28 138-166 15-42 (392)
362 3ea0_A ATPase, para family; al 94.6 0.034 1.2E-06 51.2 5.3 41 142-182 3-45 (245)
363 4b3f_X DNA-binding protein smu 94.6 0.02 6.7E-07 61.6 4.0 41 142-182 204-244 (646)
364 4edh_A DTMP kinase, thymidylat 94.6 0.037 1.3E-06 51.0 5.4 37 141-177 4-40 (213)
365 1cp2_A CP2, nitrogenase iron p 94.6 0.029 1E-06 52.7 4.7 37 145-181 3-39 (269)
366 2iyv_A Shikimate kinase, SK; t 94.5 0.02 6.7E-07 50.6 3.3 22 144-165 3-24 (184)
367 2if2_A Dephospho-COA kinase; a 94.5 0.02 6.7E-07 51.6 3.3 21 145-166 3-23 (204)
368 3m6a_A ATP-dependent protease 94.5 0.018 6.1E-07 60.7 3.4 26 142-168 107-132 (543)
369 3sfz_A APAF-1, apoptotic pepti 94.5 0.042 1.4E-06 62.4 6.7 101 130-231 134-246 (1249)
370 1via_A Shikimate kinase; struc 94.5 0.02 6.8E-07 50.3 3.2 21 145-165 6-26 (175)
371 1oix_A RAS-related protein RAB 94.5 0.018 6.2E-07 51.4 2.9 23 145-168 31-53 (191)
372 2jaq_A Deoxyguanosine kinase; 94.5 0.025 8.5E-07 50.4 3.8 21 145-165 2-22 (205)
373 1zak_A Adenylate kinase; ATP:A 94.4 0.023 7.8E-07 52.0 3.6 25 142-166 4-28 (222)
374 3tlx_A Adenylate kinase 2; str 94.4 0.025 8.7E-07 52.9 3.9 34 141-179 27-60 (243)
375 1kao_A RAP2A; GTP-binding prot 94.4 0.061 2.1E-06 45.5 6.0 20 145-164 5-24 (167)
376 3exa_A TRNA delta(2)-isopenten 94.4 0.11 3.8E-06 51.0 8.5 25 143-167 3-27 (322)
377 3qxc_A Dethiobiotin synthetase 94.4 0.28 9.5E-06 46.1 11.0 117 143-280 21-171 (242)
378 1ukz_A Uridylate kinase; trans 94.4 0.025 8.6E-07 50.8 3.6 23 143-165 15-37 (203)
379 1qf9_A UMP/CMP kinase, protein 94.3 0.025 8.6E-07 49.9 3.5 23 143-165 6-28 (194)
380 3io3_A DEHA2D07832P; chaperone 94.3 0.067 2.3E-06 53.1 7.0 60 130-193 7-68 (348)
381 2afh_E Nitrogenase iron protei 94.3 0.036 1.2E-06 52.9 4.8 38 144-181 3-40 (289)
382 3fb4_A Adenylate kinase; psych 94.3 0.028 9.6E-07 51.0 3.8 22 145-166 2-23 (216)
383 1zuh_A Shikimate kinase; alpha 94.3 0.031 1.1E-06 48.6 3.9 21 144-164 8-28 (168)
384 2c61_A A-type ATP synthase non 94.2 0.05 1.7E-06 56.2 5.8 44 122-167 133-176 (469)
385 1vt4_I APAF-1 related killer D 94.2 0.11 3.8E-06 58.8 8.9 44 142-185 149-195 (1221)
386 1g3q_A MIND ATPase, cell divis 94.2 0.054 1.8E-06 49.7 5.5 38 144-181 3-41 (237)
387 3con_A GTPase NRAS; structural 94.1 0.08 2.7E-06 46.4 6.4 21 145-165 23-43 (190)
388 1uf9_A TT1252 protein; P-loop, 94.1 0.027 9.1E-07 50.3 3.3 31 143-179 8-38 (203)
389 3be4_A Adenylate kinase; malar 94.1 0.03 1E-06 51.2 3.6 26 142-167 4-29 (217)
390 1e6c_A Shikimate kinase; phosp 94.1 0.029 9.9E-07 48.8 3.3 22 144-165 3-24 (173)
391 1ofh_A ATP-dependent HSL prote 94.1 0.046 1.6E-06 52.1 5.0 36 143-181 50-85 (310)
392 2bjv_A PSP operon transcriptio 94.1 0.035 1.2E-06 52.2 4.1 40 143-182 29-68 (265)
393 3v9p_A DTMP kinase, thymidylat 94.0 0.048 1.6E-06 50.9 4.9 40 138-177 20-63 (227)
394 1bif_A 6-phosphofructo-2-kinas 94.0 0.39 1.3E-05 49.3 12.3 36 143-178 39-74 (469)
395 4dcu_A GTP-binding protein ENG 94.0 0.14 4.7E-06 52.5 8.8 19 145-164 25-43 (456)
396 2dyk_A GTP-binding protein; GT 94.0 0.11 3.8E-06 43.8 6.9 20 145-164 3-22 (161)
397 1q3t_A Cytidylate kinase; nucl 94.0 0.037 1.3E-06 51.2 4.1 36 139-179 12-47 (236)
398 3dl0_A Adenylate kinase; phosp 94.0 0.031 1.1E-06 50.8 3.4 21 145-165 2-22 (216)
399 3lv8_A DTMP kinase, thymidylat 94.0 0.064 2.2E-06 50.3 5.6 40 138-177 22-62 (236)
400 1r8s_A ADP-ribosylation factor 94.0 0.19 6.6E-06 42.5 8.4 20 146-165 3-22 (164)
401 1u8z_A RAS-related protein RAL 94.0 0.13 4.5E-06 43.4 7.2 20 145-164 6-25 (168)
402 1u0j_A DNA replication protein 93.9 0.056 1.9E-06 51.7 5.2 35 132-166 93-127 (267)
403 2qnr_A Septin-2, protein NEDD5 93.9 0.018 6.2E-07 55.9 1.8 32 146-179 21-53 (301)
404 1ex7_A Guanylate kinase; subst 93.9 0.031 1.1E-06 50.6 3.2 23 144-166 2-24 (186)
405 3a8t_A Adenylate isopentenyltr 93.9 0.033 1.1E-06 55.2 3.5 35 141-180 38-72 (339)
406 3eph_A TRNA isopentenyltransfe 93.9 0.19 6.5E-06 50.9 9.2 24 144-167 3-26 (409)
407 1r6b_X CLPA protein; AAA+, N-t 93.8 0.16 5.5E-06 55.3 9.3 27 142-168 206-232 (758)
408 3k9g_A PF-32 protein; ssgcid, 93.8 0.049 1.7E-06 51.2 4.5 40 142-182 26-66 (267)
409 3qks_A DNA double-strand break 93.8 0.04 1.4E-06 50.2 3.7 24 144-168 24-47 (203)
410 1ak2_A Adenylate kinase isoenz 93.8 0.048 1.7E-06 50.4 4.4 33 142-179 15-47 (233)
411 1nrj_B SR-beta, signal recogni 93.7 0.11 3.6E-06 46.8 6.5 21 144-164 13-33 (218)
412 2oze_A ORF delta'; para, walke 93.7 0.053 1.8E-06 51.8 4.7 41 142-182 33-76 (298)
413 3r20_A Cytidylate kinase; stru 93.7 0.042 1.4E-06 51.6 3.8 33 143-180 9-41 (233)
414 2pt5_A Shikimate kinase, SK; a 93.7 0.046 1.6E-06 47.3 3.8 21 145-165 2-22 (168)
415 2c9o_A RUVB-like 1; hexameric 93.7 0.087 3E-06 54.0 6.5 42 138-180 58-99 (456)
416 3tqf_A HPR(Ser) kinase; transf 93.6 0.037 1.3E-06 49.7 3.1 24 142-165 15-38 (181)
417 4tmk_A Protein (thymidylate ki 93.6 0.081 2.8E-06 48.8 5.6 31 142-172 2-32 (213)
418 2r62_A Cell division protease 93.6 0.024 8.2E-07 53.3 2.0 71 146-235 47-117 (268)
419 1vht_A Dephospho-COA kinase; s 93.6 0.044 1.5E-06 49.9 3.7 32 142-179 3-34 (218)
420 3vr4_D V-type sodium ATPase su 93.5 0.043 1.5E-06 56.5 3.8 44 122-167 132-175 (465)
421 2v6i_A RNA helicase; membrane, 93.5 0.15 5.2E-06 51.8 7.9 39 142-180 1-40 (431)
422 2f9l_A RAB11B, member RAS onco 93.5 0.041 1.4E-06 49.1 3.3 22 145-167 7-28 (199)
423 1ihu_A Arsenical pump-driving 93.5 0.083 2.8E-06 55.9 6.2 40 142-181 7-46 (589)
424 3upu_A ATP-dependent DNA helic 93.5 0.036 1.2E-06 56.9 3.2 36 145-180 47-83 (459)
425 3k1j_A LON protease, ATP-depen 93.5 0.037 1.3E-06 59.0 3.3 40 140-180 57-97 (604)
426 3d3q_A TRNA delta(2)-isopenten 93.4 0.045 1.5E-06 54.3 3.6 32 144-180 8-39 (340)
427 2wsm_A Hydrogenase expression/ 93.4 0.08 2.7E-06 47.9 5.0 37 144-181 31-67 (221)
428 2xb4_A Adenylate kinase; ATP-b 93.4 0.052 1.8E-06 49.9 3.8 22 145-166 2-23 (223)
429 1hyq_A MIND, cell division inh 93.3 0.095 3.3E-06 48.9 5.6 38 144-181 3-41 (263)
430 3fgn_A Dethiobiotin synthetase 93.2 0.78 2.7E-05 43.2 11.8 117 144-280 27-167 (251)
431 3ld9_A DTMP kinase, thymidylat 93.2 0.073 2.5E-06 49.5 4.6 40 141-180 19-59 (223)
432 2a9k_A RAS-related protein RAL 93.2 0.1 3.4E-06 45.2 5.3 20 145-164 20-39 (187)
433 1e4v_A Adenylate kinase; trans 93.1 0.058 2E-06 49.0 3.6 23 145-167 2-24 (214)
434 2bov_A RAla, RAS-related prote 93.0 0.17 5.8E-06 44.7 6.6 20 145-164 16-35 (206)
435 3ake_A Cytidylate kinase; CMP 93.0 0.066 2.3E-06 47.9 3.8 31 145-180 4-34 (208)
436 3vr4_A V-type sodium ATPase ca 92.9 0.14 4.9E-06 54.0 6.7 53 122-178 213-265 (600)
437 1um8_A ATP-dependent CLP prote 92.9 0.083 2.8E-06 52.4 4.8 37 141-180 70-106 (376)
438 2gj8_A MNME, tRNA modification 92.9 0.048 1.7E-06 47.6 2.7 24 142-166 3-26 (172)
439 3foz_A TRNA delta(2)-isopenten 92.9 0.061 2.1E-06 52.7 3.6 25 143-167 10-34 (316)
440 1e9r_A Conjugal transfer prote 92.8 0.087 3E-06 53.4 4.9 39 143-181 53-91 (437)
441 4hlc_A DTMP kinase, thymidylat 92.8 0.1 3.6E-06 47.6 5.0 34 143-177 2-35 (205)
442 3crm_A TRNA delta(2)-isopenten 92.8 0.059 2E-06 53.0 3.4 31 144-179 6-36 (323)
443 2ph1_A Nucleotide-binding prot 92.8 0.11 3.8E-06 48.8 5.2 41 143-183 18-59 (262)
444 3hws_A ATP-dependent CLP prote 92.7 0.096 3.3E-06 51.7 4.9 35 142-179 50-84 (363)
445 1zd9_A ADP-ribosylation factor 92.6 0.28 9.5E-06 43.0 7.4 21 144-164 23-43 (188)
446 1ltq_A Polynucleotide kinase; 92.6 0.062 2.1E-06 51.4 3.3 32 144-179 3-34 (301)
447 3pqc_A Probable GTP-binding pr 92.6 0.53 1.8E-05 40.9 9.2 19 145-163 25-43 (195)
448 3cwq_A Para family chromosome 92.6 0.12 4.1E-06 47.0 5.0 37 145-182 2-39 (209)
449 3qkt_A DNA double-strand break 92.5 0.073 2.5E-06 52.3 3.7 21 144-165 24-44 (339)
450 1x6v_B Bifunctional 3'-phospho 92.4 0.13 4.3E-06 55.1 5.6 40 141-180 50-89 (630)
451 2vf7_A UVRA2, excinuclease ABC 92.4 0.045 1.6E-06 60.6 2.2 28 139-166 32-59 (842)
452 2grj_A Dephospho-COA kinase; T 92.3 0.087 3E-06 47.7 3.7 33 142-179 11-43 (192)
453 3llm_A ATP-dependent RNA helic 92.3 0.16 5.5E-06 46.8 5.6 38 142-179 75-117 (235)
454 3gqb_B V-type ATP synthase bet 92.3 0.066 2.3E-06 55.0 3.1 43 122-166 128-170 (464)
455 2woo_A ATPase GET3; tail-ancho 92.3 0.17 5.7E-06 49.6 5.9 40 143-182 19-58 (329)
456 2hf9_A Probable hydrogenase ni 92.3 0.11 3.8E-06 47.1 4.3 34 144-178 39-72 (226)
457 1byi_A Dethiobiotin synthase; 92.0 0.17 5.9E-06 45.8 5.4 35 145-179 3-38 (224)
458 2f6r_A COA synthase, bifunctio 92.0 0.081 2.8E-06 50.7 3.3 22 143-164 75-96 (281)
459 2ga8_A Hypothetical 39.9 kDa p 92.0 0.097 3.3E-06 52.2 3.9 27 140-167 19-47 (359)
460 2gks_A Bifunctional SAT/APS ki 92.0 0.11 3.8E-06 54.7 4.5 50 131-180 356-409 (546)
461 2jlq_A Serine protease subunit 91.9 0.29 9.8E-06 50.0 7.4 38 143-180 19-57 (451)
462 1m8p_A Sulfate adenylyltransfe 91.8 0.11 3.9E-06 55.0 4.3 49 132-180 381-434 (573)
463 3gqb_A V-type ATP synthase alp 91.8 0.14 4.8E-06 53.8 4.9 53 122-178 202-254 (578)
464 1zj6_A ADP-ribosylation factor 91.8 0.63 2.1E-05 40.5 8.6 23 142-164 15-37 (187)
465 2gk6_A Regulator of nonsense t 91.7 0.17 5.9E-06 54.0 5.7 39 143-181 195-234 (624)
466 3tmk_A Thymidylate kinase; pho 91.6 0.14 4.7E-06 47.4 4.2 27 141-168 3-29 (216)
467 1udx_A The GTP-binding protein 91.5 0.059 2E-06 54.9 1.7 27 140-167 154-180 (416)
468 3pih_A Uvrabc system protein A 91.4 0.053 1.8E-06 60.6 1.2 28 140-167 21-48 (916)
469 2r6f_A Excinuclease ABC subuni 91.3 0.061 2.1E-06 60.2 1.7 26 140-165 41-66 (972)
470 2ygr_A Uvrabc system protein A 91.3 0.06 2E-06 60.4 1.7 27 140-166 43-69 (993)
471 2ocp_A DGK, deoxyguanosine kin 91.3 0.11 3.8E-06 48.0 3.3 24 142-165 1-24 (241)
472 2wji_A Ferrous iron transport 91.1 0.13 4.5E-06 44.2 3.3 20 145-165 5-24 (165)
473 2hjg_A GTP-binding protein ENG 91.0 0.5 1.7E-05 48.0 8.1 17 145-161 5-21 (436)
474 2xj4_A MIPZ; replication, cell 90.8 0.2 6.8E-06 47.7 4.6 38 144-181 5-43 (286)
475 3hjn_A DTMP kinase, thymidylat 90.8 0.28 9.6E-06 44.4 5.4 34 145-178 2-35 (197)
476 2b6h_A ADP-ribosylation factor 90.6 0.73 2.5E-05 40.6 7.9 21 143-163 29-49 (192)
477 2xau_A PRE-mRNA-splicing facto 90.6 0.5 1.7E-05 51.8 8.1 24 140-163 106-129 (773)
478 2p5s_A RAS and EF-hand domain 90.5 0.49 1.7E-05 41.8 6.7 21 144-164 29-49 (199)
479 1knx_A Probable HPR(Ser) kinas 90.5 0.13 4.5E-06 50.3 3.0 24 142-165 146-169 (312)
480 2zej_A Dardarin, leucine-rich 90.4 0.12 4.3E-06 45.2 2.6 20 145-165 4-23 (184)
481 1p5z_B DCK, deoxycytidine kina 90.3 0.13 4.3E-06 48.4 2.7 21 141-161 22-42 (263)
482 3gmt_A Adenylate kinase; ssgci 90.3 0.17 6E-06 47.2 3.6 30 145-179 10-39 (230)
483 4ad8_A DNA repair protein RECN 90.2 0.076 2.6E-06 55.4 1.1 26 140-167 58-83 (517)
484 2r44_A Uncharacterized protein 90.2 0.12 4E-06 50.2 2.4 34 143-179 46-79 (331)
485 1ega_A Protein (GTP-binding pr 90.2 0.11 3.6E-06 50.3 2.1 23 143-166 8-30 (301)
486 2h92_A Cytidylate kinase; ross 90.2 0.16 5.6E-06 45.9 3.3 32 143-179 3-34 (219)
487 2xzl_A ATP-dependent helicase 90.0 0.18 6E-06 55.7 3.9 39 143-181 375-414 (802)
488 1ko7_A HPR kinase/phosphatase; 90.0 0.16 5.4E-06 49.7 3.1 24 143-166 144-167 (314)
489 3auy_A DNA double-strand break 90.0 0.16 5.5E-06 50.5 3.3 22 144-166 26-47 (371)
490 2wjg_A FEOB, ferrous iron tran 90.0 0.17 5.9E-06 44.1 3.1 20 145-165 9-28 (188)
491 1z2a_A RAS-related protein RAB 89.9 0.18 6.2E-06 42.7 3.1 20 145-164 7-26 (168)
492 3ez2_A Plasmid partition prote 89.6 0.3 1E-05 48.8 5.0 41 141-181 106-153 (398)
493 3pg5_A Uncharacterized protein 89.6 0.18 6.3E-06 49.9 3.3 38 145-182 3-41 (361)
494 2ce2_X GTPase HRAS; signaling 89.5 0.19 6.4E-06 42.2 2.9 20 145-164 5-24 (166)
495 2ged_A SR-beta, signal recogni 89.5 0.2 6.9E-06 43.8 3.2 23 142-164 47-69 (193)
496 2qag_C Septin-7; cell cycle, c 89.5 0.13 4.5E-06 52.3 2.2 23 146-169 34-56 (418)
497 2wjy_A Regulator of nonsense t 89.5 0.34 1.2E-05 53.4 5.6 38 143-180 371-409 (800)
498 3pxg_A Negative regulator of g 89.4 0.24 8E-06 51.0 4.1 27 142-168 200-226 (468)
499 2whx_A Serine protease/ntpase/ 89.4 0.61 2.1E-05 49.8 7.4 40 141-180 184-224 (618)
500 3t1o_A Gliding protein MGLA; G 89.4 0.21 7.3E-06 43.5 3.3 22 145-167 16-37 (198)
No 1
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=100.00 E-value=8.1e-65 Score=592.93 Aligned_cols=324 Identities=55% Similarity=0.928 Sum_probs=303.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.++.++|+.++.+|+++||+|++|++++.....++.||||+..||.+|| ||+|+|++++|+||.+||||||||++++.+
T Consensus 1720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~~ 1799 (2050)
T 3cmu_A 1720 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1799 (2050)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTCCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcceEECCCCcccCCCcccCCcHHHHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHHH
Confidence 3799999999999999999999999998767789999999999999999 999999999999999999999999999999
Q ss_pred hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567 168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ 247 (440)
Q Consensus 168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q 247 (440)
++.++-|+|||.|+.+++.|++++|++.+++++.+|++.|+.+++++.+++++.+++|||||++++.|+++++++||+.+
T Consensus 1800 ~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~p~~~~~~~~~~~~ 1879 (2050)
T 3cmu_A 1800 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1879 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHC-------
T ss_pred hhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHHHHHHHHHhcCCCcEEEEcchhhcCcHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567 248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR 327 (440)
Q Consensus 248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~ 327 (440)
++.|||+|+++||+|...+.+.+|+||||||+|+++|.|||+|++++||++++||+++|+.+||.+.+| ++++++|++
T Consensus 1880 ~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~gg~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~ 1957 (2050)
T 3cmu_A 1880 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSE 1957 (2050)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTCEEEEEECCC--------CCCCCSSHHHHHHHEEEEEEEEEEEEEE--ETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhhhccCceEEEEhhHhHHHhccccCCCCCcCCcchhheeeeeeeeeeeecccc--cCCeeeeeE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 788999999
Q ss_pred EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567 328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK 407 (440)
Q Consensus 328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~ 407 (440)
++++|+|||++|||+.++|+|+|++||++.++|+|+|++.+++.|+|+||+|+++++|||++++++||++||++.+||++
T Consensus 1958 ~~~~~~k~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2037 (2050)
T 3cmu_A 1958 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 2037 (2050)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEEecCCCCCcceEEEEEEecCCcCccchHHHHHHhcCcEEeeeeEEEeCCeeccccHHHHHHHHHHCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 013567 408 VVRSMMS 414 (440)
Q Consensus 408 ~~~~~~~ 414 (440)
++|+++.
T Consensus 2038 ~~~~~~~ 2044 (2050)
T 3cmu_A 2038 KVRELLL 2044 (2050)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9999863
No 2
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=100.00 E-value=8.2e-63 Score=571.54 Aligned_cols=324 Identities=55% Similarity=0.928 Sum_probs=302.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
+++.++|..++.+|+++||+|++|++++.....++.||||++.||.+|| ||+|+|++++|+||+||||||||+++++.+
T Consensus 1376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A 1376 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCccEEECCCCCCCcCceecCCCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999998766789999999999999998 799999999999999999999999999999
Q ss_pred hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567 168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ 247 (440)
Q Consensus 168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q 247 (440)
++.++.|+||+.|+++++.+++.+|++++++++.+|++.|+.+++++.+++++.+++|||||++++.|+.++++++|+.+
T Consensus 1456 ~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~ 1535 (1706)
T 3cmw_A 1456 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1535 (1706)
T ss_dssp HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------
T ss_pred HhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567 248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR 327 (440)
Q Consensus 248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~ 327 (440)
++.|+|.|+++|++|...+++.+|++|||||+++++|.|||+|++++||++++||+++|+.+||.+.+| ++++++|++
T Consensus 1536 ~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~al~~~~~~r~~~~~~~~~~--~~~~~~~~~ 1613 (1706)
T 3cmw_A 1536 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSE 1613 (1706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC--------CCCCBSSCSHHHHHEEEEEEEEEEEEEE--ETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccccccceecCCCccccCcceeeeeeeeeeeeeeccccc--cCCeeEeeE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 788999999
Q ss_pred EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567 328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK 407 (440)
Q Consensus 328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~ 407 (440)
++++|+|||++|||+.++|+|+|++||++.++|+|+|++.+++.|+|+||+|+++++|||++++++||++||++.+||++
T Consensus 1614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1693 (1706)
T 3cmw_A 1614 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 1693 (1706)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEEecccCCCCcceEEEEEEecCCcCccchHHHHHHhcCcEEEeeeeEEeCCeeccccHHHHHHHHHHCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 013567 408 VVRSMMS 414 (440)
Q Consensus 408 ~~~~~~~ 414 (440)
++|+++.
T Consensus 1694 ~~~~~~~ 1700 (1706)
T 3cmw_A 1694 KVRELLL 1700 (1706)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9999873
No 3
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-60 Score=481.82 Aligned_cols=327 Identities=52% Similarity=0.864 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCC-ccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 88 FLDRQRALDAAMNDINSSFGKGSVTRLGSAGGAL-VETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 88 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
..++.++|+.++.+|+++||++.++++++..... +.++|||++.||.+|+ |||++|++++|+||||+||||||++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 4 EKQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999999998877666 8999999999999999 9999999999999999999999999999
Q ss_pred HHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchh
Q 013567 166 EVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGM 245 (440)
Q Consensus 166 ~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~ 245 (440)
.++..++.++||++|+.+++.+++++|++++++.+..+.+.+++++.++.+++...++++||||++.+++..++++++|+
T Consensus 84 ~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~ 163 (356)
T 3hr8_A 84 EAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGD 163 (356)
T ss_dssp HHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCS
T ss_pred HHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchh
Confidence 99988889999999999999999999999999999999999999999999888889999999999999987889988899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccc
Q 013567 246 QQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVG 325 (440)
Q Consensus 246 ~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G 325 (440)
.+++.++|.++++++.|..++++.+++||++||++++++.+|++++.++||++|+|++++|+.+++.+.+| ++++..|
T Consensus 164 ~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~~~k--~g~~~~g 241 (356)
T 3hr8_A 164 MQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIK--EGKDVIG 241 (356)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEEEEEE--ETTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEeccccc--cCCcccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999988888 6777789
Q ss_pred eEEEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEe-----CceeccccHHHHHHHHHhCcH
Q 013567 326 VRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSY-----GDQRLGQGRDKALQYLRDNPL 400 (440)
Q Consensus 326 ~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~-----~~~~~gq~~~~~~~~L~e~~~ 400 (440)
+.++++++|||++||+..++|+|+|++||+++++++|+|+++|+|.|+|+||+| +++++|||++++++||++||+
T Consensus 242 ~~~~vkvvKnr~~~~~~~~~f~i~~~~Gi~~~~~~~~~~~~~~~i~~~g~w~~~~~~~~~~~~~~~g~~~~~~~l~~~~~ 321 (356)
T 3hr8_A 242 NVISVKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSLGQGSSNAVQFLKDNPE 321 (356)
T ss_dssp EEEEEEEEEESSSCCCCEEEEEEETTTBSCHHHHHHHHHHHTTSSEEETTEEEEECTTSCEEEEEEHHHHHHHHHHHCHH
T ss_pred cEEEEEEEeCCCCCCCceEEEEEeeCCCcChhccHHHHHHHcChhhccCcEEEEEccCCCceeeccCHHHHHHHHHHCHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 013567 401 LQEEIEKVVRSMMSDG 416 (440)
Q Consensus 401 ~~~ei~~~~~~~~~~~ 416 (440)
+++||++++|+++..+
T Consensus 322 ~~~~~~~~~~~~~~~~ 337 (356)
T 3hr8_A 322 IAGEIERRIREKYGLL 337 (356)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998644
No 4
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=100.00 E-value=3.5e-57 Score=459.33 Aligned_cols=345 Identities=49% Similarity=0.861 Sum_probs=280.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 88 FLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 88 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.+++.++|+.++++|++.|+++.+|++++.....+.++|||++.||.+|+ |||++|++++|+|+||+||||||++++.+
T Consensus 18 ~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 18 AKERSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 34799999999999999999999999888777788999999999999998 89999999999999999999999999999
Q ss_pred HhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhh
Q 013567 167 VQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQ 246 (440)
Q Consensus 167 ~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~ 246 (440)
+++.+..|+||++|+++++.+++++|++.+++++.++.+.+++++.++.++++..+++|||||++.+.++.++++++++.
T Consensus 98 ~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~ 177 (366)
T 1xp8_A 98 AQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDS 177 (366)
T ss_dssp HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-------
T ss_pred HHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccc
Confidence 99889999999999999999999999999999999999999999999998888899999999999998656666555554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeeccc-ccccCCCcccc
Q 013567 247 QIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGK-IKSVKGDEDVG 325 (440)
Q Consensus 247 q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~-ik~~~g~~~~G 325 (440)
+.+.++|.++++++.|+.++++++++||++||+++.++.+|+++..+.||.+|+|++++|++++|... +| .+++..|
T Consensus 178 ~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~~~~k--~~~~~~g 255 (366)
T 1xp8_A 178 LPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTK--VGNDAVA 255 (366)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEESCCC--------CE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecchhcc--cCccccC
Confidence 44467788999999999999999999999999999998888888999999999999999999999876 77 4566678
Q ss_pred eEEEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHH
Q 013567 326 VRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEI 405 (440)
Q Consensus 326 ~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei 405 (440)
+.++++|+|||..||+..++|+|+|+.||.+.++++++|++.+++.|+|+||+|+++++|||++++++||++||++++||
T Consensus 256 ~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi~~~~~~l~~~~~~~~~~k~g~w~~~~~~~~~~g~~~~~~~l~~~~~~~~~~ 335 (366)
T 1xp8_A 256 NTVKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTIAYIAERPEMEQEI 335 (366)
T ss_dssp EEEEEEEEEESSSCCCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEESSSSEEEESHHHHHHHHTTCHHHHHHH
T ss_pred CEEEEEEEcCCCCCCCceEEEEEEeCCCcccchhHHHHHHHhCeeeccCceeeECCeEecchHHHHHHHHHhCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcc-cccccCCCCCcch
Q 013567 406 EKVVRSMMSDGSVHQG-SFLRNVSLPNQEE 434 (440)
Q Consensus 406 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (440)
++++|+++..+....+ ...+.+.++.++|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (366)
T 1xp8_A 336 RDRVMAAIRAGNAGEAPALAPAPAAPEAAE 365 (366)
T ss_dssp HHHHHHHHC---------------------
T ss_pred HHHHHHHhcCCCcccccccCccCCCccccc
Confidence 9999999877766555 4455555555443
No 5
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=100.00 E-value=2.1e-56 Score=452.17 Aligned_cols=339 Identities=53% Similarity=0.886 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
+++.++|+.++++|+++|++++++++++.....+.++|||++.||.+|+ |||++|++++|+|+||+||||||++++..+
T Consensus 8 ~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 8 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp --CHHHHHHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999988777788999999999999998 999999999999999999999999999999
Q ss_pred hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567 168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ 247 (440)
Q Consensus 168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q 247 (440)
++.+.+|+||++|+++++.+++++|++.+++.+.++.+.+++++.++.++++.++++||||+++.+.+..++++++++.+
T Consensus 88 ~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~ 167 (356)
T 1u94_A 88 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 167 (356)
T ss_dssp HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC-----
T ss_pred HHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccch
Confidence 99899999999999999988999999999999999999999999998888888999999999999987666666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567 248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR 327 (440)
Q Consensus 248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~ 327 (440)
.+.++|.++++++.|+.++++++++||++||+++.++.+|+++..+.||++|+|++++|++++|.+.+| .+++..|++
T Consensus 168 ~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k--~g~~~~g~~ 245 (356)
T 1u94_A 168 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSE 245 (356)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEE--SSSSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeec--cCccccCcE
Confidence 446678899999999999999999999999999999988888899999999999999999999988777 466677888
Q ss_pred EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567 328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK 407 (440)
Q Consensus 328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~ 407 (440)
+.++|+|||..||+..++|+|+++.||++.+++++.|.+.+++.++|+||+|+++++||+++++++||++||++++||++
T Consensus 246 ~~~~i~K~r~~p~~~~~~f~i~~~~Gi~~~~~~l~~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~i~~ 325 (356)
T 1u94_A 246 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 325 (356)
T ss_dssp EEEEEEEESSBCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEECCTTCEEETTEEEESSHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEECCCccCCCCCcEEEEEEcCCCcCcCcchHHHHHHhchhcCcceeEeeCCccHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcccccccCCC
Q 013567 408 VVRSMMSDGSVHQGSFLRNVSL 429 (440)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~ 429 (440)
++|+++.......+++++.+|.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~ 347 (356)
T 1u94_A 326 KVRELLLSNPNSTPDFSVDDSE 347 (356)
T ss_dssp HHHHHHSCCC------------
T ss_pred HHHHHhccCCCCCCCccccccc
Confidence 9999999889999999999887
No 6
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=100.00 E-value=5.8e-56 Score=518.47 Aligned_cols=339 Identities=53% Similarity=0.878 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.++.++|+.++.+++++||++++|++++......+.+|||++.||.+|+ ||+++|++++|+||||+|||+||++++..+
T Consensus 1372 ~~~~~~~~~~~~~~~~~~~~~si~~~~~~~~~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1372 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCCcceeecccccccccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999999998777778899999999999999 999999999999999999999999999999
Q ss_pred hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567 168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ 247 (440)
Q Consensus 168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q 247 (440)
++.+..|+||+.|+.+++.+++.+|++++++.+.++.+.+++++.+++++++..+++||||++.++.|..+.++++++..
T Consensus 1452 ~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~ 1531 (2050)
T 3cmu_A 1452 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1531 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC
T ss_pred HHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567 248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR 327 (440)
Q Consensus 248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~ 327 (440)
++.++|.|++.+++|...+++.+++||++||...+++.+|+++++++||++|+||+++|+.++|.+.+| ++++.+|++
T Consensus 1532 ~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~~~~g~~fg~~~~t~gg~al~~~~s~rl~~~~~~~~k--~~~~~~g~~ 1609 (2050)
T 3cmu_A 1532 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSE 1609 (2050)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEEECTTCCSSCCEEESSHHHHHHHEEEEEEEEEEEEEE--ETTEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHhCCcEEEEEccccccchhhcCCCcccCCCceeeeeeeEEEEeecccccc--cccccccce
Confidence 666788999999999999999999999999999999999999999999999999999999999999999 678899999
Q ss_pred EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567 328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK 407 (440)
Q Consensus 328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~ 407 (440)
++++|+|||++|||+.++|+|+|++||+..++|+|++++++++.|+|+||+|+++++|||++++++||++||++++||++
T Consensus 1610 ~~~~v~k~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1689 (2050)
T 3cmu_A 1610 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 1689 (2050)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEEEccCCCCcceeEEEEecCCccccchhHHHHHhhcCeEeccCcEEEECCcCccchHHHHHHHHHHCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcccccccCCC
Q 013567 408 VVRSMMSDGSVHQGSFLRNVSL 429 (440)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~ 429 (440)
+||+++..++++.+++||++||
T Consensus 1690 ~~~~~~~~~~~~~~~~~~~~~~ 1711 (2050)
T 3cmu_A 1690 KVRELLLSNPNSTTGSTGSGSS 1711 (2050)
T ss_dssp HHHHHHCSSCCC----------
T ss_pred HHHHHHhcCCCCCCCcccCCCc
Confidence 9999999999999999999999
No 7
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=100.00 E-value=2.1e-54 Score=436.84 Aligned_cols=324 Identities=54% Similarity=0.933 Sum_probs=289.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 90 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
++.++|+.++++|+++|+++.++++++.....+.++|||++.||.+|+ |||++|++++|+||||+||||||++++..++
T Consensus 7 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 7 DREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSSCCTTCCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCceeccccccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999988777788999999999999999 9999999999999999999999999999999
Q ss_pred hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhH
Q 013567 169 KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQI 248 (440)
Q Consensus 169 ~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~ 248 (440)
+.+++++||++|+++++.+++++|++++++.+.++.+.+++++.++.++++.++++||||+++.+.+..++++++|+.+.
T Consensus 87 ~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~ 166 (349)
T 2zr9_A 87 AAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHV 166 (349)
T ss_dssp HTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CC
T ss_pred hCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchh
Confidence 99999999999999999889999999999999999999999999998888888999999999999976777766666544
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEE
Q 013567 249 GLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRV 328 (440)
Q Consensus 249 ~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~ 328 (440)
+.++|.+++.++.|+.+++++|+|||++||++++++.+|++++.+.||++|+|++++|+++++.+.+| .+++..|+++
T Consensus 167 ~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k--~g~~~~g~~~ 244 (349)
T 2zr9_A 167 GLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLK--DGTDAVGNRT 244 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEEC--SSSSCCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeee--cCccccCCEE
Confidence 46777889999999999999999999999999999888888999999999999999999999988777 4667778899
Q ss_pred EEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHHH
Q 013567 329 RVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKV 408 (440)
Q Consensus 329 ~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~~ 408 (440)
+++|+|||..||+..++|+++++.||.+.++++++|.+.+++.++|.||+|.++++||+++++++||++||++++||+++
T Consensus 245 ~~~i~K~~~~p~~~~~~fdi~~~~Gi~~~~~~l~~g~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~i~~~ 324 (349)
T 2zr9_A 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENTDVANEIEKK 324 (349)
T ss_dssp EEEEEEESSSCCCCEEEEEEETTSCBCHHHHHHHHHHHTTSSEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEEeCCCccCCCCceEEEEEEeCCCcCccccHHHHHHhhchhcCcceEEEEcCccHHhHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 013567 409 VRSMMSD 415 (440)
Q Consensus 409 ~~~~~~~ 415 (440)
+|+++.-
T Consensus 325 ~~~~~~~ 331 (349)
T 2zr9_A 325 IKEKLGI 331 (349)
T ss_dssp HHHTTCC
T ss_pred HHHHcCC
Confidence 9998743
No 8
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=100.00 E-value=1.7e-53 Score=419.82 Aligned_cols=282 Identities=20% Similarity=0.363 Sum_probs=223.6
Q ss_pred ccccccCcHHHHHHhc----CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChhhhhhhcccc
Q 013567 122 VETFPSGCLTLDLALG----GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPSYSKALGVDV 195 (440)
Q Consensus 122 ~~~i~TGi~~LD~~Lg----GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~~a~~lGv~~ 195 (440)
++++|||++.||.+|+ ||||+| +++|+||||+||||||+|++.++++. ++.|+|||+|+++++.+++++|++.
T Consensus 4 ~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~ 82 (333)
T 3io5_A 4 MDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDP 82 (333)
T ss_dssp --CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCG
T ss_pred CCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCH
Confidence 5689999999999999 999999 99999999999999999999999986 7899999999999999999999999
Q ss_pred cceeecCCCCHHHH-HHHHHHH--HhcCCcceEEEecccccCCchhhcccchhhhHH--HHHHHHHHHHHHHHHHHHhcC
Q 013567 196 ENLIVCQPDNGEMA-LEIADRM--CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIG--LQARLMSQALRKMSGNASKAG 270 (440)
Q Consensus 196 ~~l~i~~~~~~ee~-l~~i~~l--~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~--~~ar~l~~~l~~L~~lak~~~ 270 (440)
+++++.++.+.+++ ++.++.+ +++..+++|||||+++++++.++++++|+.+.+ .|+|.++++|++|..+++++|
T Consensus 83 d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~ 162 (333)
T 3io5_A 83 ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKN 162 (333)
T ss_dssp GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999 8888777 677889999999999999878899988877766 789999999999999999999
Q ss_pred CEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEe
Q 013567 271 CTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIF 350 (440)
Q Consensus 271 ~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~ 350 (440)
++||+|||+++ ++.||++|++ +||+++ |++++|++++|.+.+| ++++++|++++++++|+|+.+|....+|+|+|
T Consensus 163 i~vi~tNQV~k-~G~~fg~p~~-~GG~~l-~~ss~Rl~lrk~~~ik--~~~~~~G~~~~v~~~k~kv~k~k~~~~~~i~~ 237 (333)
T 3io5_A 163 IPCIAINHTYE-TQEMFSKTVM-GGGTGP-MYSADTVFIIGKRQIK--DGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKF 237 (333)
T ss_dssp CEEEEEEEC-----------------CCG-GGGSSEEEEEEEC------------CEEEEEEEECSSBCTTCEEEEEBCT
T ss_pred CEEEEECCeee-cCcccCCCCC-CCccee-eeeeEEEEEEeccccc--cCCccEEeEEEEeEEEEEEccCCcCCcEEEEe
Confidence 99999999998 9999999875 999999 9999999999999999 68899999999999999999999999999999
Q ss_pred CCCcccchhhhhHHHHccceec-cCceEEeC--ceeccccHH-------------HHHHHHHhCcHHHHHHHHHH
Q 013567 351 GEGVSKLGCMLDCAEMMDIVVR-KGAWYSYG--DQRLGQGRD-------------KALQYLRDNPLLQEEIEKVV 409 (440)
Q Consensus 351 ~~Gi~~~~~i~~~~~~~~ii~k-~G~~~~~~--~~~~gq~~~-------------~~~~~L~e~~~~~~ei~~~~ 409 (440)
++||+++++|+|+|+++|+|.| +|+||+|+ ++++||+++ .++.-|-+|+++++.|+.+.
T Consensus 238 ~~Gi~~~~~lld~a~~~gii~k~~g~wy~~~~~~~~~G~~~~~ek~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 312 (333)
T 3io5_A 238 DGGIDPYSGLLDMALELGFVVKPKNGWYAREFLDEETGEMIREEKSWRAKDTNCTTFWGPLFKHQPFRDAIKRAY 312 (333)
T ss_dssp TSCBCTTTTHHHHHHHHTSEECSSTTEEEEEEEETTTTEEEECSCCEEGGGGSSHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHhCCeEEcCCCceEEeccCCccccccHHHHHHHHhhcCchHHHHHHHhcCchHHHHHHHhh
Confidence 9999999999999999999998 99999997 778886553 34444667777777666543
No 9
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=100.00 E-value=6.4e-49 Score=455.63 Aligned_cols=328 Identities=54% Similarity=0.916 Sum_probs=306.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 89 LDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 89 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.++.++|+.++.+|+++|++++++++++.......++|||++.||.+|+ |||++|++++|+||||+||||||++++.++
T Consensus 328 ~~~~~~l~~a~~~i~~~fg~~~~~~l~~~~~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 328 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCCcceeccccccccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999999988766778999999999999999 999999999999999999999999999999
Q ss_pred hhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhh
Q 013567 168 QKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQ 247 (440)
Q Consensus 168 ~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q 247 (440)
++.+.+|+||++|++.++.+++.+|++.+++.+.++.+.+++++.++.++++.++++|||||++.+.+..++++.+|+.+
T Consensus 408 ~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~ 487 (1706)
T 3cmw_A 408 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 487 (1706)
T ss_dssp HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCC
T ss_pred HHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccc
Confidence 99999999999999999999999999999999999999999999999888888999999999999997677776667666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceE
Q 013567 248 IGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVR 327 (440)
Q Consensus 248 ~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~ 327 (440)
.+.++|.++++++.|+.+++++|++||++||+++.++.+|++++.+.||.+|+|+++++++++|.+.++ ++++..+++
T Consensus 488 ~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~--~g~~~~~~~ 565 (1706)
T 3cmw_A 488 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSE 565 (1706)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEE--ETTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccc--cCccccCcE
Confidence 667888999999999999999999999999999999998999999999999999999999999987766 455566788
Q ss_pred EEEEEeeccCCCCCceEEEEEEeCCCcccchhhhhHHHHccceeccCceEEeCceeccccHHHHHHHHHhCcHHHHHHHH
Q 013567 328 VRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK 407 (440)
Q Consensus 328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~k~G~~~~~~~~~~gq~~~~~~~~L~e~~~~~~ei~~ 407 (440)
++++|+|||..||+..+.|+|+|++||+++++++|+|++.+++.++|+||+|+++++|||++.++.||++||++.+||++
T Consensus 566 ~~l~V~KnR~gp~~~~~~F~I~~~~Gi~~~~~~~d~a~~~~~i~k~g~w~~y~~~~i~~g~~~~~~~l~~~p~l~~~i~~ 645 (1706)
T 3cmw_A 566 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 645 (1706)
T ss_dssp EEEEEEEESSSCSCCEEEEEEETTTEECHHHHHHHHHHHTTSEEEETTEEEETTEEEEESHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCeEEEEEecCCCccccccHHHhhhhcCceeccccEEeeCCceecccHHHHHHHHhhCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC
Q 013567 408 VVRSMMSDGSV 418 (440)
Q Consensus 408 ~~~~~~~~~~~ 418 (440)
++|+++.....
T Consensus 646 ~~~~~~~~~p~ 656 (1706)
T 3cmw_A 646 KVRELLLSNPN 656 (1706)
T ss_dssp HHHHHHCSSCC
T ss_pred HHHHHhccCCc
Confidence 99999876643
No 10
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.97 E-value=2.5e-31 Score=265.36 Aligned_cols=257 Identities=25% Similarity=0.389 Sum_probs=165.0
Q ss_pred ccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHH
Q 013567 80 SSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTL 159 (440)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTL 159 (440)
+......+..+..++++.+...+++.|.++..+. + ......++|||++.||.+|+||+++|++++|+||||+|||||
T Consensus 47 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~l 123 (324)
T 2z43_A 47 LSVAAGIPLSTAQKIIKEARDALDIRFKTALEVK--K-ERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQL 123 (324)
T ss_dssp -------------------------CCCCHHHHH--H-HHCSCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHhhcccCccchhhhh--h-hhccCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHH
Confidence 3333344556677888888888888887776543 1 123467999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc------CCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHH---HHHHHHHHHhc-CC
Q 013567 160 ALHAIAEVQKL------GGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEM---ALEIADRMCRS-GA 221 (440)
Q Consensus 160 aL~li~~~~~~------~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee---~l~~i~~l~~~-~~ 221 (440)
|++++..++.+ +++++||++|+++++. +++++|+++ +++++.++.+.++ ++..+..++++ .+
T Consensus 124 a~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 203 (324)
T 2z43_A 124 CHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203 (324)
T ss_dssp HHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccC
Confidence 99999998766 7899999999987664 567788877 4778888877765 45566666766 78
Q ss_pred cceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 222 IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 222 ~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
+++|||||++.++ ..++++. + ....+.+.+.++++.|+.++++++++||++||+++.++.+|+++..+.||.+|.+
T Consensus 204 ~~lvVIDsl~~l~-~~~~~~~-g--~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~ 279 (324)
T 2z43_A 204 IKLIVVDSVTSHF-RAEYPGR-E--NLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYH 279 (324)
T ss_dssp EEEEEETTTTHHH-HHHSCTT-T--SHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----------------------
T ss_pred CCEEEEeCcHHHh-hhhhcCc-c--cHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHh
Confidence 9999999999987 3444321 1 1112234678999999999999999999999999888777777888999999999
Q ss_pred eceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCccc
Q 013567 302 FASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSK 356 (440)
Q Consensus 302 ~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~ 356 (440)
++++++.+++.. |..+.+++.|||..| ...+.|+|. +.||..
T Consensus 280 ~~d~~l~l~r~~-----------~~~r~~~v~k~~~~p-~~~~~f~I~-~~Gi~~ 321 (324)
T 2z43_A 280 VPGIRIQLKKSR-----------GNRRIARVVDAPHLP-EGEVVFALT-EEGIRD 321 (324)
T ss_dssp --CEEEEEEECS-----------TTEEEEEEEECSSSC-CEEEEEEEE-TTEEEC
T ss_pred hCcEEEEEEEcC-----------CCeEEEEEEECCCCC-ceEEEEEEe-CCCccc
Confidence 999999999742 234689999999874 456899997 778853
No 11
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.97 E-value=2.9e-31 Score=267.10 Aligned_cols=251 Identities=23% Similarity=0.361 Sum_probs=172.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 86 SRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 86 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
.+..+..++++.+...+++.|.++..+.- ......++|||++.||.+|+|||++|++++|+||||+||||||++++.
T Consensus 68 is~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 68 LSEAKVDKIKEAANKLIEPGFLTAFEYSE---KRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp ------------------CCSEEHHHHHH---HGGGCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcccCCCcHHHHHh---hhcccceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456777788887777776666554431 123467899999999999999999999999999999999999999999
Q ss_pred HHhh------cCCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHHHH---HHHHHHHhc--CCcceEE
Q 013567 166 EVQK------LGGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEMAL---EIADRMCRS--GAIDLIC 226 (440)
Q Consensus 166 ~~~~------~~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee~l---~~i~~l~~~--~~~~lvV 226 (440)
.++. .+++++||++|+++++. +++++|+++ +++++.++.+.+++. ..+..++++ .++++||
T Consensus 145 ~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvV 224 (343)
T 1v5w_A 145 TAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLI 224 (343)
T ss_dssp HTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEE
T ss_pred HHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEE
Confidence 8765 47899999999987764 567788887 578887777666544 445666666 7899999
Q ss_pred EecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc--cc-CCceeecccceeeeec
Q 013567 227 VDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV--YY-GNPEVTSGGIALKFFA 303 (440)
Q Consensus 227 IDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~--~~-~~~~~~~gG~~l~~~a 303 (440)
|||++.++ ..++++. |+ +..+.+.+.++++.|+.+++++|++||++||+++.++. +| +++..+.||++|.|++
T Consensus 225 IDsl~~l~-~~~~~~~-g~--~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~a 300 (343)
T 1v5w_A 225 IDSIMALF-RVDFSGR-GE--LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHAS 300 (343)
T ss_dssp EETSGGGH-HHHCCGG-GC--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTSS
T ss_pred EechHHHH-HHHhccc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhC
Confidence 99999998 3444421 11 11223457899999999999999999999999988765 56 6777889999999999
Q ss_pred eEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCccc
Q 013567 304 SVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSK 356 (440)
Q Consensus 304 ~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~ 356 (440)
++|+.+++.+ |..+.++|.|||.. |...+.|+|. +.||..
T Consensus 301 d~~l~l~r~~-----------~~~r~~~v~K~r~~-p~~~~~f~I~-~~Gi~~ 340 (343)
T 1v5w_A 301 TTRISLRKGR-----------GELRIAKIYDSPEM-PENEATFAIT-AGGIGD 340 (343)
T ss_dssp SEEEEEEESS-----------TTEEEEEEEECTTC-CSSCEEEEEE-TTEEEE
T ss_pred CEEEEEEEcC-----------CCEEEEEEEECCCC-CCeeEEEEEe-CCCccC
Confidence 9999999742 23468999999988 4567899998 788853
No 12
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.97 E-value=7.7e-31 Score=261.11 Aligned_cols=258 Identities=23% Similarity=0.342 Sum_probs=198.5
Q ss_pred ccccCCCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHH
Q 013567 78 GFSSDSGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKT 157 (440)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKT 157 (440)
..+.+....+.++..++++.+...+++.|.++..+. + ......++|||++.||.+|+||+++|++++|+|+||+|||
T Consensus 36 ~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~--~-~~~~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT 112 (322)
T 2i1q_A 36 GELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLL--K-QRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKT 112 (322)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHH--H-HHTTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHH
T ss_pred HHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHH--H-HhccCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHH
Confidence 334445566778888999999988888888776552 1 1234679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh------------cC----CcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCCHHH---HH
Q 013567 158 TLALHAIAEVQK------------LG----GNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDNGEM---AL 210 (440)
Q Consensus 158 TLaL~li~~~~~------------~~----~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~~ee---~l 210 (440)
|||++++.+++. .+ ++|+||++|+++++. +++++|+++ +++++.++.+.++ ++
T Consensus 113 ~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l 192 (322)
T 2i1q_A 113 QIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFA 192 (322)
T ss_dssp HHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHH
Confidence 999999988642 23 689999999987664 567788887 5788888888775 44
Q ss_pred HHHHHHHhc-CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCC
Q 013567 211 EIADRMCRS-GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGN 289 (440)
Q Consensus 211 ~~i~~l~~~-~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~ 289 (440)
+.+..++++ .++++|||||++.++ ..++++. + ....+.+.+.++++.|+.++++++++||++||+++.++.+|++
T Consensus 193 ~~l~~~~~~~~~~~lvVIDsl~~l~-~~~~~~~-~--~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~ 268 (322)
T 2i1q_A 193 EKIEDLIQEGNNIKLVVIDSLTSTF-RNEYTGR-G--KLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGM 268 (322)
T ss_dssp HTHHHHHHTTCEEEEEEEECSSHHH-HHHCCCT-T--SHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------
T ss_pred HHHHHHHhhccCccEEEEECcHHHH-HHHhcCC-c--cHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCC
Confidence 556666766 789999999999987 3444321 1 1112334678999999999999999999999999888777788
Q ss_pred ceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567 290 PEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS 355 (440)
Q Consensus 290 ~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~ 355 (440)
+..+.||.+|.+++++++.+++.. + ..+.+++.|||..|. ..+.|+|. +.||.
T Consensus 269 ~~~~~g~~~~~~~~d~~i~l~~~~------~-----~~r~~~v~k~~~~p~-~~~~f~I~-~~Gi~ 321 (322)
T 2i1q_A 269 AEQAIGGHIVGHAATFRFFVRKGK------G-----DKRVAKLYDSPHLPD-AEAIFRIT-EKGIQ 321 (322)
T ss_dssp CCEESSHHHHHHHCSEEEEEEECS------T-----TEEEEEEEECSSSCC-EEEEEEEE-TTEEE
T ss_pred CcCCCCcHHHHhcCcEEEEEEecC------C-----CeEEEEEEECCCCCC-eEEEEEEe-CCCcC
Confidence 889999999999999999999742 1 235799999998754 56789997 77873
No 13
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.95 E-value=4e-27 Score=244.68 Aligned_cols=298 Identities=13% Similarity=0.069 Sum_probs=208.0
Q ss_pred ccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeec-----------c
Q 013567 49 SRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRL-----------G 115 (440)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~-----------~ 115 (440)
..+.++|...||.+|++++.+|+++..+.++... +.+.+.++..+.++..+.+|...........+ .
T Consensus 92 ~~~s~~n~~~ya~iv~e~~~~R~li~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (444)
T 2q6t_A 92 ATPTAAYAEHYARIVAEKWTLRRLIQAAGEAMRLAYEEAGSLDEILDTAGKKILEVALTKTDTEARPMRELVHETFEHIE 171 (444)
T ss_dssp TCSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHCSCCCSSEEHHHHHHHHHHHTT
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHH
Confidence 4456789999999999999999999888776553 23345666666677777777664433322221 1
Q ss_pred CC--CCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhh----h
Q 013567 116 SA--GGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSY----S 188 (440)
Q Consensus 116 ~~--~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~----a 188 (440)
.. ......++|||++.||.++ |||++|++++|+|+||+||||||++++.+++. .+.+|+||+.|++..+.. +
T Consensus 172 ~~~~~~~~~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~ 250 (444)
T 2q6t_A 172 ALFQNKGEVAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMC 250 (444)
T ss_dssp C----------CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHH
Confidence 11 1234678999999999999 99999999999999999999999999999986 477999999999876542 2
Q ss_pred hhhccccc-------------------------ceeecCC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcc
Q 013567 189 KALGVDVE-------------------------NLIVCQP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEG 241 (440)
Q Consensus 189 ~~lGv~~~-------------------------~l~i~~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~ 241 (440)
...+++.+ ++++.+. .+..++...++++.++.++++||||+++.+.... .+
T Consensus 251 ~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~--~~ 328 (444)
T 2q6t_A 251 SEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPG--SG 328 (444)
T ss_dssp HHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-----
T ss_pred HHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCc--CC
Confidence 23344432 2444433 3688888888888888889999999999987420 00
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--eeecccceeeeeceEEEEEeeccccccc
Q 013567 242 EIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--EVTSGGIALKFFASVRLEIRSTGKIKSV 318 (440)
Q Consensus 242 ~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~~ 318 (440)
. ....+.+.+..+++.|+.++++++++||+++|+++......+ .| ....++..+.+.++.++++.+.+....
T Consensus 329 ---~-~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~- 403 (444)
T 2q6t_A 329 ---K-SGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNP- 403 (444)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCS-
T ss_pred ---C-CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccccCC-
Confidence 0 001234567889999999999999999999999875543211 11 123356678999999999998654321
Q ss_pred CCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchh
Q 013567 319 KGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGC 359 (440)
Q Consensus 319 ~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~ 359 (440)
+......+.+.|.|+|..|.. .+.+.|.....++.+
T Consensus 404 --~~~~~~~~~l~i~K~R~g~~g---~~~l~f~~~~~~f~~ 439 (444)
T 2q6t_A 404 --HSEKAGIAEIIVGKQRNGPTG---TVELQFHASHVRFND 439 (444)
T ss_dssp --SSSCCSEEEEEEEECSSSCCE---EEEEEEETTTTEEEC
T ss_pred --cCCCCCeEEEEEEecCCCCce---EEEEEEECCccEEec
Confidence 111113568999999987653 567777776655443
No 14
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.95 E-value=1.2e-27 Score=245.13 Aligned_cols=254 Identities=23% Similarity=0.368 Sum_probs=173.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHH
Q 013567 83 SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALH 162 (440)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~ 162 (440)
.-.....+..++++.+.+.....|..+..+. + ......+++||++.||++|+|||++|++++|+||||+|||||+++
T Consensus 121 ~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~--~-~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~ 197 (400)
T 3lda_A 121 IKGISEAKADKLLNEAARLVPMGFVTAADFH--M-RRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHT 197 (400)
T ss_dssp STTCCHHHHHHHHHHHHHHSCCSCCCHHHHH--H-HHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhccccCCCHHHHH--h-hhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHH
Confidence 3444555666666665543322222111110 0 122467899999999999999999999999999999999999998
Q ss_pred HHHHHhhc------CCcEEEEcCCCCCChh----hhhhhccccc----ceeecCCCCHHHHH---HHHHHHHhcCCcceE
Q 013567 163 AIAEVQKL------GGNAMLVDAEHAFDPS----YSKALGVDVE----NLIVCQPDNGEMAL---EIADRMCRSGAIDLI 225 (440)
Q Consensus 163 li~~~~~~------~~~vv~id~E~~~~~~----~a~~lGv~~~----~l~i~~~~~~ee~l---~~i~~l~~~~~~~lv 225 (440)
++...+.+ +++++||++|+.+.+. +++++|++++ ++.+..+.+.++.. ..+..++....++++
T Consensus 198 la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~ll 277 (400)
T 3lda_A 198 LAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLI 277 (400)
T ss_dssp HHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred HHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceE
Confidence 88777652 5779999999987764 4677888875 77777777665443 344455556789999
Q ss_pred EEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccc--cc-CCceeecccceeeee
Q 013567 226 CVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV--YY-GNPEVTSGGIALKFF 302 (440)
Q Consensus 226 VIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~--~~-~~~~~~~gG~~l~~~ 302 (440)
+||+++.+++ .++++. | ....+.+.+.++++.|+.+++++|+|||++||++...+. +| +++..+.||..|.|.
T Consensus 278 VIDs~t~~~~-~~~sg~-g--~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ 353 (400)
T 3lda_A 278 VVDSVMALYR-TDFSGR-G--ELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYS 353 (400)
T ss_dssp EEETGGGGCC--------C--CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHH
T ss_pred EecchhhhCc-hhhcCc-c--chHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHh
Confidence 9999999985 555431 1 112334556888999999999999999999999765543 33 566778899999999
Q ss_pred ceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCccc
Q 013567 303 ASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSK 356 (440)
Q Consensus 303 a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~ 356 (440)
++.++++++.. + ..+.+++.|+|..|+.. +.|.|. +.||..
T Consensus 354 ad~vl~L~~~~------g-----~~R~l~v~K~R~~p~~e-~~F~It-~~Gi~~ 394 (400)
T 3lda_A 354 STTRLGFKKGK------G-----CQRLCKVVDSPCLPEAE-CVFAIY-EDGVGD 394 (400)
T ss_dssp CSEEEEEEECS------T-----TEEEEEEEECSSSCSCE-EEEEEE-TTEEEC
T ss_pred cceEEEEEecC------C-----CcEEEEEEcCCCCCCCc-eEEEEe-CCcccc
Confidence 99999999742 2 23689999999888765 899998 888864
No 15
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.95 E-value=1.3e-27 Score=241.13 Aligned_cols=250 Identities=24% Similarity=0.347 Sum_probs=173.0
Q ss_pred ccHHHHHHHHHHHHHHHHh-hcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013567 86 SRFLDRQRALDAAMNDINS-SFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 86 ~~~~~~~~~l~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li 164 (440)
....++.++++.+...+.. .|.++..+.- ......+||||++.||.+|+||+++|++++|+||||+|||||+++++
T Consensus 76 ~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 76 ISEGTALKIIQAARKAANLGTFMRADEYLK---KRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp CCHHHHHHHHHHHHHHCSTTSCEEHHHHHH---HHHTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhccccCCccHHHHHh---hhccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456677788877777655 4444332211 12346789999999999999999999999999999999999988888
Q ss_pred HHHhhc------CCcEEEEcCCCCCChh----hhhhhcccc----cceeecCCCC---HHHHHHHHHHHHhc-----CCc
Q 013567 165 AEVQKL------GGNAMLVDAEHAFDPS----YSKALGVDV----ENLIVCQPDN---GEMALEIADRMCRS-----GAI 222 (440)
Q Consensus 165 ~~~~~~------~~~vv~id~E~~~~~~----~a~~lGv~~----~~l~i~~~~~---~ee~l~~i~~l~~~-----~~~ 222 (440)
...+.+ ++.|+||++++.+.+. +++..+++. +++.+....+ ..+.++.+..++.+ .++
T Consensus 153 ~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~ 232 (349)
T 1pzn_A 153 VMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPV 232 (349)
T ss_dssp HHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCE
T ss_pred HHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCC
Confidence 776532 3567999999886443 445556554 5666655443 23456667777766 689
Q ss_pred ceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567 223 DLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 223 ~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~ 302 (440)
+++|||++++++. .+.++. + ....+.+.+.++++.|..+++++++|||++||++..++.+++++..+.+|.+|.|+
T Consensus 233 ~llIlDs~ta~ld-~~~~~~-~--~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 233 KLLIVDSLTSHFR-SEYIGR-G--ALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp EEEEEETSSTTHH-HHCCST-T--THHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTT
T ss_pred CEEEEeCchHhhh-hhhccc-c--cHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeec
Confidence 9999999999873 333321 1 11122345678888999999999999999999998887777888889999999999
Q ss_pred ceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567 303 ASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS 355 (440)
Q Consensus 303 a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~ 355 (440)
++.|+.+++.. |..+.+++.|++..|.. .+.|.|. +.||.
T Consensus 309 ~~~rL~l~~~~-----------~~~Ri~k~~ks~~~~~~-~~~f~It-~~Gi~ 348 (349)
T 1pzn_A 309 ATLRVYLRKGK-----------GGKRIARLIDAPHLPEG-EAVFSIT-EKGIE 348 (349)
T ss_dssp CSEEEEEEECT-----------TSEEEEEESCSSSSCCS-EEEEEEE-TTEEE
T ss_pred CcEEEEEEEcC-----------CCeEEEEEEeCCCCCCe-EEEEEEc-CCCCC
Confidence 99999998742 12457899999887654 4899997 77873
No 16
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.95 E-value=4.7e-27 Score=244.09 Aligned_cols=295 Identities=15% Similarity=0.088 Sum_probs=204.9
Q ss_pred cccccccchhhHHHHhhcccccccccccccccccCCCCccHHHH--HHHHHHHHHHHHhhcCCCCeeeccCC--------
Q 013567 48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSDSGDSRFLDR--QRALDAAMNDINSSFGKGSVTRLGSA-------- 117 (440)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~i~~~~~~~~~~~~~~~-------- 117 (440)
...+.++|...||.+|++++.+|+++..+.++.....+.+..+. .+.++..+.+|...........+.+.
T Consensus 91 ~~~~~~~n~~~ya~~v~e~~~~R~li~~~~~i~~~~~~~~~~~~~~l~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~i 170 (444)
T 3bgw_A 91 ASVASTTTFKQHCQTVSEYFQKRKAISIAQQIIENVNESDDGPVKPIQEAVSELMEIEASGTDDDDGSIDEALVTVYEEI 170 (444)
T ss_dssp HHCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCTHHHHHHHHHHHHSCCCSSCCCCCHHHHHHHHHHH
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHH
Confidence 34567789999999999999999999887776654211133333 44444444445443222111111110
Q ss_pred CC--CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhh----hh
Q 013567 118 GG--ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSK----AL 191 (440)
Q Consensus 118 ~~--~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~----~l 191 (440)
.. ....++|||++.||.++ |||++|+++.|+|+||+||||||++++.+++..+.+|+||+.|++..+...+ ..
T Consensus 171 ~~~~~~~~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~ 249 (444)
T 3bgw_A 171 ESADGNITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAG 249 (444)
T ss_dssp HTCCSSCCSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHS
T ss_pred HHhhcCCCCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHc
Confidence 00 34678999999999999 7999999999999999999999999999999888899999999998875322 22
Q ss_pred cccc---------------------------cceeecCC--CCHHHHHHHHHHHHhcCCcc--eEEEecccccCCchhhc
Q 013567 192 GVDV---------------------------ENLIVCQP--DNGEMALEIADRMCRSGAID--LICVDSVSALTPRAEIE 240 (440)
Q Consensus 192 Gv~~---------------------------~~l~i~~~--~~~ee~l~~i~~l~~~~~~~--lvVIDsl~~l~~~~el~ 240 (440)
|++. .++++.+. .+.+++...++++.++.+++ +|||||++.+.....
T Consensus 250 ~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~-- 327 (444)
T 3bgw_A 250 SINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKA-- 327 (444)
T ss_dssp CCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCS--
T ss_pred CCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCC--
Confidence 3331 23444443 47888999999888888999 999999999864210
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--eeecccceeeeeceEEEEEeecccccc
Q 013567 241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--EVTSGGIALKFFASVRLEIRSTGKIKS 317 (440)
Q Consensus 241 ~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~ 317 (440)
. ..+.+.++.+++.|+.+|+++|++||+++|+++......+ .| ....++..+.+.++..+++.+.+....
T Consensus 328 ~-------~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~ 400 (444)
T 3bgw_A 328 N-------DSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDK 400 (444)
T ss_dssp S-------SCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCT
T ss_pred C-------CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccc
Confidence 0 1234457889999999999999999999999875542111 12 223466678999999999998654321
Q ss_pred cCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccch
Q 013567 318 VKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLG 358 (440)
Q Consensus 318 ~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~ 358 (440)
++ +. ...+.+.|.|||..|.. .+.+.|.....++.
T Consensus 401 -~~-~~-~~~~~l~i~K~R~G~~g---~v~l~f~~~~~rf~ 435 (444)
T 3bgw_A 401 -ES-ES-KNIVEVIIAKHRDGPVG---TVSLAFIKEYGNFV 435 (444)
T ss_dssp -TC-SS-TTEEEEEEEEESSSCCE---EEEEEEETTTTEEE
T ss_pred -cc-cC-CCeEEEEEEcccCCCCe---EEEEEEEcCccEEe
Confidence 11 11 13468999999976643 56777776654443
No 17
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.94 E-value=1.6e-26 Score=240.72 Aligned_cols=298 Identities=12% Similarity=0.131 Sum_probs=208.7
Q ss_pred cccccccchhhHHHHhhcccccccccccccccccC--CCCccHHHHHHHHHHHHHHHHhhcCCCCeeeccC---------
Q 013567 48 RSRFFTASSKLSAARKRDKKISCEFDGKVNGFSSD--SGDSRFLDRQRALDAAMNDINSSFGKGSVTRLGS--------- 116 (440)
Q Consensus 48 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~--------- 116 (440)
...+.++|...||.+|++++..|+++..+.++... +...+..+..+.++..+..+...........+.+
T Consensus 94 ~~~~s~ani~~ya~iv~e~~~~R~li~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (454)
T 2r6a_A 94 DAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTREDEIDVLLDEADRKIMEVSQRKHSGAFKNIKDILVQTYDNI 173 (454)
T ss_dssp TSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCSHHHHHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHHHH
T ss_pred HcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHhccccccCccHHHHHHHHHHHH
Confidence 34566889999999999999999998888776543 2333455555555666666655433222111110
Q ss_pred ----CCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChhh----
Q 013567 117 ----AGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPSY---- 187 (440)
Q Consensus 117 ----~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~~---- 187 (440)
.....+.++|||++.||.++ |||++|++++|+|+||+|||||+++++..++. .+.+|+||+.|++..+..
T Consensus 174 ~~~~~~~~~~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~ 252 (454)
T 2r6a_A 174 EMLHNRDGEITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRML 252 (454)
T ss_dssp HHHHSCCCCCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHH
T ss_pred HHHHhCCCCCCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH
Confidence 01234679999999999999 99999999999999999999999999999886 466999999999876542
Q ss_pred hhhhccccc-------------------------ceeecCC--CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhc
Q 013567 188 SKALGVDVE-------------------------NLIVCQP--DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIE 240 (440)
Q Consensus 188 a~~lGv~~~-------------------------~l~i~~~--~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~ 240 (440)
+...|++.+ ++++.++ .+..++...++.+++..++++||||+++.+.... ..
T Consensus 253 ~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~-~~ 331 (454)
T 2r6a_A 253 CAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSG-RS 331 (454)
T ss_dssp HHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSC-C-
T ss_pred HHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCC-CC
Confidence 223444432 2344433 3788888888888877889999999999987421 10
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--eeecccceeeeeceEEEEEeecccccc
Q 013567 241 GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--EVTSGGIALKFFASVRLEIRSTGKIKS 317 (440)
Q Consensus 241 ~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~ 317 (440)
. ..+.+.+..+++.|+.+++++|++||+++|+++......+ .| ....++..+.+.++..+++.+.+....
T Consensus 332 ~-------~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~~~ 404 (454)
T 2r6a_A 332 K-------ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNK 404 (454)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC---
T ss_pred C-------CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccccCc
Confidence 0 1223457888999999999999999999999876543211 01 123456688999999999998654321
Q ss_pred cCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcccchhh
Q 013567 318 VKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCM 360 (440)
Q Consensus 318 ~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~~~~~i 360 (440)
+......+.+.|.|||..|+ ..+.+.|.....++.++
T Consensus 405 ---~~~~~~~~~l~i~K~R~G~~---g~v~l~f~~~~~~f~~~ 441 (454)
T 2r6a_A 405 ---DSENKNIIEIIIAKQRNGPV---GTVQLAFIKEYNKFVNL 441 (454)
T ss_dssp -------CCEEEEEEEEESSSCC---EEEEEEEETTTTEEECC
T ss_pred ---ccCCCCeEEEEEecccCCCC---eEEEEEEEcCccEEeCC
Confidence 11112356899999997765 35778888777655543
No 18
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.94 E-value=3.5e-26 Score=216.28 Aligned_cols=218 Identities=25% Similarity=0.382 Sum_probs=150.5
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh------cCCcEEEEcCCCCCChh----hhhhh
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK------LGGNAMLVDAEHAFDPS----YSKAL 191 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~------~~~~vv~id~E~~~~~~----~a~~l 191 (440)
+.+++||++.||.+|+||+++|++++|+||||+|||||+++++..++. .+.+++|+++++.+... +++.+
T Consensus 3 ~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (243)
T 1n0w_A 3 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERY 82 (243)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT
T ss_pred ceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHc
Confidence 568999999999999999999999999999999999998888876543 26899999999975543 45678
Q ss_pred cccc----cceeecCCCCHHHHHH---HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHH
Q 013567 192 GVDV----ENLIVCQPDNGEMALE---IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG 264 (440)
Q Consensus 192 Gv~~----~~l~i~~~~~~ee~l~---~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~ 264 (440)
|+++ +++.+..+.+.++... .+..++...++++++||+++.+.. ..+++. + ....+.+.+.++++.|+.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~-~~~~~~-~--~~~~r~~~~~~~~~~l~~ 158 (243)
T 1n0w_A 83 GLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR-TDYSGR-G--ELSARQMHLARFLRMLLR 158 (243)
T ss_dssp TCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----------CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH-HHhcCC-c--cHHHHHHHHHHHHHHHHH
Confidence 8887 6777777777665443 355556667899999999998874 333321 0 011223346788888999
Q ss_pred HHHhcCCEEEEEecccccccc--cc-CCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCC
Q 013567 265 NASKAGCTLIFLNQIRYKIGV--YY-GNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY 341 (440)
Q Consensus 265 lak~~~~tVI~inhl~~~ig~--~~-~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~ 341 (440)
++++.++|||+++|..+.... ++ +++..+.||..|.+.++.++.+++.. |..+.++|.|+|..|..
T Consensus 159 ~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~-----------~~~r~l~v~K~r~~~~~ 227 (243)
T 1n0w_A 159 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR-----------GETRICKIYDSPCLPEA 227 (243)
T ss_dssp HHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS-----------TTEEEEEECCBTTBSCE
T ss_pred HHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC-----------CCeEEEEEEECCCCCCC
Confidence 999999999999999876653 23 34556789999999999999998742 12458999999987653
Q ss_pred ceEEEEEEeCCCccc
Q 013567 342 KQAEFEIIFGEGVSK 356 (440)
Q Consensus 342 ~~~~~~i~~~~Gi~~ 356 (440)
...|+|. +.||..
T Consensus 228 -~~~f~I~-~~Gi~~ 240 (243)
T 1n0w_A 228 -EAMFAIN-ADGVGD 240 (243)
T ss_dssp -EEEEEEE-TTEEEC
T ss_pred -eEEEEEe-CCcccc
Confidence 4889987 888853
No 19
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.93 E-value=5.3e-25 Score=208.65 Aligned_cols=209 Identities=22% Similarity=0.240 Sum_probs=151.6
Q ss_pred CCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChh--hhhhhccccc
Q 013567 120 ALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPS--YSKALGVDVE 196 (440)
Q Consensus 120 ~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~--~a~~lGv~~~ 196 (440)
.++++||||++.||++|+|||++|++++|+|+||+|||+||++++.+.+ ..+.+++|++.|++..+. ++..++.+.+
T Consensus 7 ~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~ 86 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFE 86 (251)
T ss_dssp -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHH
T ss_pred CCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChH
Confidence 4688999999999999999999999999999999999999999998764 557889999999987664 3334444331
Q ss_pred ------ceee------------------cCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHH
Q 013567 197 ------NLIV------------------CQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQA 252 (440)
Q Consensus 197 ------~l~i------------------~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~a 252 (440)
++.+ ......+++++.+...+...++++++||+++.+.. ... +.
T Consensus 87 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~--~~~----~~------ 154 (251)
T 2zts_A 87 KYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIAL--RLE----EE------ 154 (251)
T ss_dssp HHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHH--HSS----SG------
T ss_pred HHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhh--hcc----Ch------
Confidence 1111 12234566777777788888999999999988752 111 11
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEE
Q 013567 253 RLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRV 332 (440)
Q Consensus 253 r~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v 332 (440)
+.+.++++.|+.+++++|++|++++|..+.... ...+...+.+.++..+.+++.+ .++ ...+.+.|
T Consensus 155 ~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~------~~~~~~~~~~~aD~vi~l~~~~-----~~~---~~~R~l~I 220 (251)
T 2zts_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPDPQHG------KLSRYGIEEFIARGVIVLDLQE-----KNI---ELKRYVLI 220 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC----C------CSSSSSCGGGGCSEEEEEEEEE-----CSS---SEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEeccccc------ccccCCceeEEeeEEEEEEEEe-----cCC---eEEEEEEE
Confidence 124567888999999999999999998653321 1234456678889888887643 112 23467999
Q ss_pred eeccCCC-CCceEEEEEEeCCCcc
Q 013567 333 QKSKVSR-PYKQAEFEIIFGEGVS 355 (440)
Q Consensus 333 ~Knr~~~-p~~~~~~~i~~~~Gi~ 355 (440)
.|+|..| +.....|+|. ++||.
T Consensus 221 ~K~R~~~~~~~~~~f~It-~~Gi~ 243 (251)
T 2zts_A 221 RKMRETRHSMKKYPFEIG-PNGIV 243 (251)
T ss_dssp EEETTCCCCCBEEEEEEE-TTEEE
T ss_pred EEcCCCCCCCEEEEEEEe-CCcEE
Confidence 9999776 3456789997 77885
No 20
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.92 E-value=5.7e-24 Score=211.44 Aligned_cols=237 Identities=17% Similarity=0.158 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 90 DRQRALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 90 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
...+++.++++.|++. . ....++|||++.||.++ |||++|++++|+|+||+||||||++++.+++.
T Consensus 29 ~~~~~~~~~~~~~~~~--~-----------~~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 29 SIDEALVTVYEEIESA--D-----------GNITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp CCHHHHHHHHHHHHTC--S-----------SSCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhc--c-----------CCCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4667788888888764 1 12458999999999999 99999999999999999999999999999988
Q ss_pred cCCcEEEEcCCCCCChhhhh----hhcccc---------------------------cceeecCC--CCHHHHHHHHHHH
Q 013567 170 LGGNAMLVDAEHAFDPSYSK----ALGVDV---------------------------ENLIVCQP--DNGEMALEIADRM 216 (440)
Q Consensus 170 ~~~~vv~id~E~~~~~~~a~----~lGv~~---------------------------~~l~i~~~--~~~ee~l~~i~~l 216 (440)
.+.+++||+.|++..+...+ ..|++. .++++.+. .+.+++...++.+
T Consensus 95 ~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l 174 (315)
T 3bh0_A 95 NDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQT 174 (315)
T ss_dssp TTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHH
Confidence 88899999999887664222 123321 14445443 4688888889988
Q ss_pred HhcCCcc--eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--e
Q 013567 217 CRSGAID--LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--E 291 (440)
Q Consensus 217 ~~~~~~~--lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~ 291 (440)
.+..+++ +|||||++.+..... . ..+.+.+..+++.|+.+|+++|++||+++|+.+......+ .| .
T Consensus 175 ~~~~~~~~~lVVID~l~~l~~~~~-----~----~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~ 245 (315)
T 3bh0_A 175 KRKNPGKRVIVMIDYLQLLEPAKA-----N----DSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLS 245 (315)
T ss_dssp HHTSSSCCEEEEEECGGGSBCSCT-----T----SCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGG
T ss_pred HHhcCCCCeEEEEeCchhcCCCCC-----C----CCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHH
Confidence 8888899 999999999874110 0 1223457889999999999999999999999865532111 11 2
Q ss_pred eecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567 292 VTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVS 355 (440)
Q Consensus 292 ~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~Gi~ 355 (440)
...+...+.+.++..+.+.+.+.... ++ + ....+.+.|.|||..+.. .+.+.|.....
T Consensus 246 dlr~sg~ie~~aD~vi~L~r~~~~~~-~~-~-~~~~~~l~v~K~R~G~~g---~~~l~f~~~~~ 303 (315)
T 3bh0_A 246 DLRESGQLEQDADIIEFLYRDDYYDK-ES-E-SKNIVEVIIAKHRDGPVG---TVSLAFIKEYG 303 (315)
T ss_dssp GGTTTSHHHHHCSEEEEEEEHHHHCT-TC-T-TTTEEEEEEEEETTSCCE---EEEEEEEGGGT
T ss_pred HhhhhhhhHhhCCEEEEEecccccCc-cc-c-CCCcEEEEEECCcCCCCc---eEEEEEECCCC
Confidence 24466788999999999998643321 11 1 113468999999976643 56666665543
No 21
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.92 E-value=7.3e-24 Score=197.34 Aligned_cols=206 Identities=23% Similarity=0.317 Sum_probs=156.0
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh----hhhhhcccc----
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS----YSKALGVDV---- 195 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~----~a~~lGv~~---- 195 (440)
+++||++.||.+++||+++|++++|+||||+|||||+.+++. ..+.+++|++.++..... +.+.++++.
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEAL 77 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHH
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHh
Confidence 489999999999989999999999999999999999888877 568899999999855543 233455543
Q ss_pred cceeecCCCCHHH---HHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCE
Q 013567 196 ENLIVCQPDNGEM---ALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCT 272 (440)
Q Consensus 196 ~~l~i~~~~~~ee---~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~t 272 (440)
+++.+.++...++ .+..++.++.. ++++++||+++.+..... .. . ...+.+.++++.|+.++++.++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~-~~--~-----~~~~~~~~~~~~L~~l~~~~~~~ 148 (220)
T 2cvh_A 78 SRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEE-NR--S-----GLIAELSRQLQVLLWIARKHNIP 148 (220)
T ss_dssp HHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGG-GS--S-----TTHHHHHHHHHHHHHHHHHHTCC
T ss_pred hcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcC-ch--H-----HHHHHHHHHHHHHHHHHHHcCCE
Confidence 3455655555433 45556666544 699999999998864211 10 0 12345677888899999999999
Q ss_pred EEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCCCceEEEEEEeCC
Q 013567 273 LIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPYKQAEFEIIFGE 352 (440)
Q Consensus 273 VI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p~~~~~~~i~~~~ 352 (440)
||+++|..+.... ....+.++..|.+.++.++.+++.. . +..+.+.|.|+|..++.....|+|. ++
T Consensus 149 vi~~~h~~~~~~~---~~~~p~~~~~~~~~~d~vi~l~~~~-------~---~~~r~l~v~K~r~~~~~~~~~f~I~-~~ 214 (220)
T 2cvh_A 149 VIVINQVHFDSRT---EMTKPVAEQTLGYRCKDILRLDKLP-------K---PGLRVAVLERHRFRPEGLMAYFRIT-ER 214 (220)
T ss_dssp EEEEECSSSSCTT---SSCCSCCCHHHHHTSSEEEEEEECS-------S---TTEEEEEEEECSSSCTTCEEEEEEE-TT
T ss_pred EEEEeeEEEcCCC---CccccCCCcceeecCcEEEEEEEec-------C---CCEEEEEEEeCCCCCCCceEEEEEe-CC
Confidence 9999999765432 2345678889999999999998753 1 1346889999999888777899997 88
Q ss_pred Ccc
Q 013567 353 GVS 355 (440)
Q Consensus 353 Gi~ 355 (440)
||.
T Consensus 215 Gi~ 217 (220)
T 2cvh_A 215 GIE 217 (220)
T ss_dssp EEE
T ss_pred cee
Confidence 884
No 22
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.91 E-value=9e-24 Score=211.61 Aligned_cols=246 Identities=15% Similarity=0.124 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHhhcC-CCCeeeccCCCCCCccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 91 RQRALDAAMNDINSSFG-KGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 91 ~~~~l~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
..+++..+++.|++.+. ... .+.++|||++.||.++ |||++|+++.|+|+||+|||||+++++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~----------~~~gi~TG~~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 4 IKEVLESAMDLITENQRKGSL----------EVTGIPTGFVQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT----------CCCSBCCSCHHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCC----------CcCcccCCChHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45678889999998654 221 3568999999999999 79999999999999999999999999999998
Q ss_pred cCCcEEEEcCCCCCChhhhhh----hcccc-------------------------cceeecCC--CCHHHHHHHHHHHHh
Q 013567 170 LGGNAMLVDAEHAFDPSYSKA----LGVDV-------------------------ENLIVCQP--DNGEMALEIADRMCR 218 (440)
Q Consensus 170 ~~~~vv~id~E~~~~~~~a~~----lGv~~-------------------------~~l~i~~~--~~~ee~l~~i~~l~~ 218 (440)
.+.+|+||+.|++..+...+. .+++. .++++.+. .+.+++...++.+.+
T Consensus 73 ~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~ 152 (338)
T 4a1f_A 73 DDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKS 152 (338)
T ss_dssp TTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHH
Confidence 889999999999877653221 22222 13555443 368899999998887
Q ss_pred cC-CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC-Cc--eeec
Q 013567 219 SG-AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG-NP--EVTS 294 (440)
Q Consensus 219 ~~-~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~-~~--~~~~ 294 (440)
.+ ++++|||||++.+...... ..+...++.+++.|+.+|++++|+||+++|+++.....-+ .| ....
T Consensus 153 ~~gg~~lIVIDyLqlm~~~~~~---------~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLr 223 (338)
T 4a1f_A 153 QHKELGIAFIDYLQLMSGSKAT---------KERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIK 223 (338)
T ss_dssp HCTTEEEEEEEEEECCCTHHHH---------HHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSE
T ss_pred hcCCCCEEEEechHHhcCCCCC---------CChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcc
Confidence 77 8999999999998742110 1122347888999999999999999999999887643211 12 2345
Q ss_pred ccceeeeeceEEEEEeeccccccc-----------CC-C---c----------------ccceEEEEEEeeccCCCCCce
Q 013567 295 GGIALKFFASVRLEIRSTGKIKSV-----------KG-D---E----------------DVGVRVRVRVQKSKVSRPYKQ 343 (440)
Q Consensus 295 gG~~l~~~a~~rl~l~r~~~ik~~-----------~g-~---~----------------~~G~~~~v~v~Knr~~~p~~~ 343 (440)
++.++.+.+++.+++.|.+..... +. + + .......+.|.|||-.|..
T Consensus 224 eSg~IeqdAD~Vl~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~g-- 301 (338)
T 4a1f_A 224 DSGGIEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATG-- 301 (338)
T ss_dssp ETTEECCCCSEEEEEECHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCCE--
T ss_pred cchhhhhhCcEEEEEecchhcccccccccccccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCCc--
Confidence 788899999999999986543210 11 0 0 0123468899999976653
Q ss_pred EEEEEEeCCCcccchh
Q 013567 344 AEFEIIFGEGVSKLGC 359 (440)
Q Consensus 344 ~~~~i~~~~Gi~~~~~ 359 (440)
.+.+.|.....++.+
T Consensus 302 -~v~l~f~~~~~~F~~ 316 (338)
T 4a1f_A 302 -TVYTRFNAPFTRYED 316 (338)
T ss_dssp -EEEEEEEGGGTEECC
T ss_pred -eEEEEEccccceecc
Confidence 677777666655443
No 23
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.4e-23 Score=198.62 Aligned_cols=204 Identities=19% Similarity=0.241 Sum_probs=150.9
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc---
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE--- 196 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~--- 196 (440)
+++++||++.||.+|+||+++|++++|+||||+||||||++++.+.++.+.+++|+++|++.... +++.+|++++
T Consensus 2 ~~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~ 81 (247)
T 2dr3_A 2 TRRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYE 81 (247)
T ss_dssp -CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHH
T ss_pred cccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence 35799999999999999999999999999999999999999999999889999999999875443 3445676653
Q ss_pred ---ceeecC-------------------CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHH
Q 013567 197 ---NLIVCQ-------------------PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARL 254 (440)
Q Consensus 197 ---~l~i~~-------------------~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~ 254 (440)
++.+.+ +.+.+++...+.+++...++++++||+++.+.. . +.. .
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~-~----~~~---------~ 147 (247)
T 2dr3_A 82 EKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI-N----KPA---------M 147 (247)
T ss_dssp HHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT-T----CGG---------G
T ss_pred hCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc-C----CHH---------H
Confidence 333222 235566677777777667899999999998862 1 100 1
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEee
Q 013567 255 MSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQK 334 (440)
Q Consensus 255 l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~K 334 (440)
..+.+..|..++++.|+|||+++|....... ..+..|.++++.++.+++... ++ ...+.+.|.|
T Consensus 148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~--------~~~~~~~~~~D~vi~L~~~~~-----~~---~~~r~l~v~K 211 (247)
T 2dr3_A 148 ARSIILQLKRVLAGTGCTSIFVSQVSVGERG--------FGGPGVEHGVDGIIRLDLDEI-----DG---ELKRSLIVWK 211 (247)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC----C--------CC-CCHHHHSSEEEEEEEEEE-----TT---EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCccc--------ccccccceeEEEEEEEEEEcc-----CC---eeEEEEEEEE
Confidence 2345667788889999999999999764221 122357788899999987431 11 1357899999
Q ss_pred ccCCCCC-ceEEEEEEeCCCccc
Q 013567 335 SKVSRPY-KQAEFEIIFGEGVSK 356 (440)
Q Consensus 335 nr~~~p~-~~~~~~i~~~~Gi~~ 356 (440)
+|..+.. ....|+|. +.|+..
T Consensus 212 ~R~~~~~~~~~~f~i~-~~Gi~~ 233 (247)
T 2dr3_A 212 MRGTSHSMRRHPFDIT-DKGIIV 233 (247)
T ss_dssp ETTSCCCCBCEEEEEE-TTEEEE
T ss_pred CCCCCCCCceEEEEEc-CCCEEE
Confidence 9987765 67889997 678853
No 24
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.91 E-value=6.2e-23 Score=192.21 Aligned_cols=205 Identities=25% Similarity=0.415 Sum_probs=142.2
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCcEEEEcCCCCCChh----hhh
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGNAMLVDAEHAFDPS----YSK 189 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-------~~~vv~id~E~~~~~~----~a~ 189 (440)
.+++++||++.||.+|+||+++|++++|+|||||||||| ++.+++...+ +++++|++++...... +.+
T Consensus 3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTl-l~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQL-AHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHH-HHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHH-HHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999999999999999999999 5555554332 6679999999875542 445
Q ss_pred hhcccc----cceeecCCCCHHH---HHHHHHHHHh-----cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHH
Q 013567 190 ALGVDV----ENLIVCQPDNGEM---ALEIADRMCR-----SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQ 257 (440)
Q Consensus 190 ~lGv~~----~~l~i~~~~~~ee---~l~~i~~l~~-----~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~ 257 (440)
.+++.+ +++.+.......+ ....+..++. ..+++++++|+++..++ .++++. + ....+.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~-~~~~~~-~--~~~~r~~~~~~ 157 (231)
T 4a74_A 82 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYIGR-G--ALAERQQKLAK 157 (231)
T ss_dssp HTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH-HHSCST-T--HHHHHHHHHHH
T ss_pred HcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc-cccCCC-c--chhHHHHHHHH
Confidence 566665 3666655544332 2334444444 67899999999988763 333331 0 11122334567
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccC
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKV 337 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~ 337 (440)
++..|..++++.|+|||+++|..+. +|..|.+.++.++.+++.. . ..+.+++.|+|.
T Consensus 158 ~~~~l~~~~~~~g~tvi~vtH~~~~------------~g~~~~~~~d~~l~l~~~~------~-----~~r~l~~~K~r~ 214 (231)
T 4a74_A 158 HLADLHRLANLYDIAVFVTNQVQAN------------GGHILAHSATLRVYLRKGK------G-----GKRIARLIDAPH 214 (231)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECC---------------------CCSEEEEEEECT------T-----SCEEEEEESCC-
T ss_pred HHHHHHHHHHHCCCeEEEEeecccC------------cchhhHhhceEEEEEEecC------C-----CeEEEEEEeCCC
Confidence 7888889999999999999999764 7888999999999998732 1 235789999999
Q ss_pred CCCCceEEEEEEeCCCcc
Q 013567 338 SRPYKQAEFEIIFGEGVS 355 (440)
Q Consensus 338 ~~p~~~~~~~i~~~~Gi~ 355 (440)
.|+.. ..|.|. ++|+.
T Consensus 215 ~~~~~-~~f~i~-~~Gl~ 230 (231)
T 4a74_A 215 LPEGE-AVFSIT-EKGIE 230 (231)
T ss_dssp -CCSC-EEEEEE-TTEEE
T ss_pred CCCce-EEEEEe-ccccc
Confidence 88776 489987 77763
No 25
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.88 E-value=5e-22 Score=209.24 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=162.5
Q ss_pred Ccccccc-CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhh----hhhhccc
Q 013567 121 LVETFPS-GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSY----SKALGVD 194 (440)
Q Consensus 121 ~~~~i~T-Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~----a~~lGv~ 194 (440)
...++|| |++.||.+| ||+++|++++|+|+||+||||||++++.+++.. +.+|+||++|++..+.. +...|++
T Consensus 220 ~~~~i~t~G~~~LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 220 ESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR 298 (503)
T ss_dssp CTTCSCCSSCTTHHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSC
T ss_pred ccCCccccchhhhhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCC
Confidence 4668999 999999999 799999999999999999999999999999886 88999999999876542 2334443
Q ss_pred c--------------------------cceeecCC---CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchh
Q 013567 195 V--------------------------ENLIVCQP---DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGM 245 (440)
Q Consensus 195 ~--------------------------~~l~i~~~---~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~ 245 (440)
. .++++.+. .+.++++..++.+++..++++|||||++.+... . . +.
T Consensus 299 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~-~-~---~~ 373 (503)
T 1q57_A 299 LRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA-S-G---ES 373 (503)
T ss_dssp CTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSC-C-S---CC
T ss_pred hhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCC-C-C---CC
Confidence 3 23555543 578899999999888889999999999988641 1 1 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccc-----cCCc--eeecccceeeeeceEEEEEeeccccccc
Q 013567 246 QQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVY-----YGNP--EVTSGGIALKFFASVRLEIRSTGKIKSV 318 (440)
Q Consensus 246 ~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~-----~~~~--~~~~gG~~l~~~a~~rl~l~r~~~ik~~ 318 (440)
.+.+.+.++++.|+.+++++|++||+++|+++ .... -..| ....|+..+.+.++..+.+.+.+.
T Consensus 374 ----~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~---- 444 (503)
T 1q57_A 374 ----DERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ---- 444 (503)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSS----
T ss_pred ----CHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCc----
Confidence 22345788999999999999999999999987 2210 0111 234567788999999999988542
Q ss_pred CCCcccceEEEEEEeecc-CCCCCceEEE-EEEeCCCcccchhh
Q 013567 319 KGDEDVGVRVRVRVQKSK-VSRPYKQAEF-EIIFGEGVSKLGCM 360 (440)
Q Consensus 319 ~g~~~~G~~~~v~v~Knr-~~~p~~~~~~-~i~~~~Gi~~~~~i 360 (440)
++. . ..+.+.|.||| ..+.. .+ .+.|......+.++
T Consensus 445 -~~~-~-~~~~l~v~K~R~~G~~g---~~~~l~f~~~~~~f~~~ 482 (503)
T 1q57_A 445 -GDM-P-NLVLVRILKCRFTGDTG---IAGYMEYNKETGWLEPS 482 (503)
T ss_dssp -SSC-T-TEEEEEEEEETTTCCCE---EEEEEEECTTTCCEEEE
T ss_pred -CCC-C-CeEEEEEEeccCCCCCC---ceEEEEEEcCCceEecC
Confidence 111 1 24689999999 46432 33 66677665555444
No 26
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.85 E-value=4.2e-20 Score=172.66 Aligned_cols=203 Identities=20% Similarity=0.253 Sum_probs=142.2
Q ss_pred cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhcccccce--
Q 013567 123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVENL-- 198 (440)
Q Consensus 123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~~l-- 198 (440)
++++||++.||.+++||+++|++++|+||||+|||||+.+++......++.++|++.+...... +...+|++++++
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE 82 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh
Confidence 4799999999999988999999999999999999999888887777778899999998764432 233456655432
Q ss_pred ---eec-------------CCCCHHHHHHHHHHHHhcCCcc--eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHH
Q 013567 199 ---IVC-------------QPDNGEMALEIADRMCRSGAID--LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALR 260 (440)
Q Consensus 199 ---~i~-------------~~~~~ee~l~~i~~l~~~~~~~--lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~ 260 (440)
.+. ...+..++...+...+...+++ ++++|+++.+... + .. ...+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~-d----~~---------~~~~~~~ 148 (235)
T 2w0m_A 83 KKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD-K----PA---------MARKISY 148 (235)
T ss_dssp TTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS-C----GG---------GHHHHHH
T ss_pred CCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC-C----HH---------HHHHHHH
Confidence 111 1225667666666666666889 9999999987631 1 00 1245666
Q ss_pred HHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP 340 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p 340 (440)
.|+.++++.++|||+++|..+.-.. .. + ..+.++++..+.+.+... +++ ..+.+.|.|+|..+.
T Consensus 149 ~l~~~~~~~~~~vi~~~h~~~~~~~------~~-~-~~~~~~~d~vi~l~~~~~-----~~~---~~r~l~v~K~r~~~~ 212 (235)
T 2w0m_A 149 YLKRVLNKWNFTIYATSQYAITTSQ------AF-G-FGVEHVADGIIRFRRMIR-----NGE---LHRYILIEKMRQTDH 212 (235)
T ss_dssp HHHHHHHHTTEEEEEEEC-------------------CHHHHCSEEEEEEEEEE-----TTE---EEEEEEEEEETTCCC
T ss_pred HHHHHHHhCCCeEEEEeccCccccc------cc-c-cchheeeeEEEEEEEEec-----CCc---EEEEEEEEeccCCcc
Confidence 7778888899999999999741110 01 1 356778888888887431 111 346899999997765
Q ss_pred C-ceEEEEEEeCC-Cccc
Q 013567 341 Y-KQAEFEIIFGE-GVSK 356 (440)
Q Consensus 341 ~-~~~~~~i~~~~-Gi~~ 356 (440)
. ....|+|. +. ||..
T Consensus 213 ~~~~~~f~i~-~~~Gi~~ 229 (235)
T 2w0m_A 213 DKHVWEIDIV-NGKGIVL 229 (235)
T ss_dssp CCSCEEEEEE-TTTEEEE
T ss_pred cceeEEEEEc-CCCCeEE
Confidence 4 67889997 56 8854
No 27
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.84 E-value=7.9e-21 Score=184.95 Aligned_cols=217 Identities=21% Similarity=0.298 Sum_probs=137.5
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----------CCcEEEEcCCCCCChh--hhh
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL----------GGNAMLVDAEHAFDPS--YSK 189 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----------~~~vv~id~E~~~~~~--~a~ 189 (440)
.++++||++.||.++ ||+++|++++|+||||+|||||+++++..+... ++.++|++.|+..... ++.
T Consensus 10 ~~~i~tg~~~ld~~l-ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~ 88 (279)
T 1nlf_A 10 LEAFAAAPPPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLH 88 (279)
T ss_dssp HHHHHSCCCCCCEEE-TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHH
T ss_pred HHHhcCCCCChheeE-CCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHH
Confidence 457999999999999 799999999999999999999999888866542 4679999999876543 344
Q ss_pred hhcccc---------cceeecCCC-------CHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHH
Q 013567 190 ALGVDV---------ENLIVCQPD-------NGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQAR 253 (440)
Q Consensus 190 ~lGv~~---------~~l~i~~~~-------~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar 253 (440)
.+|.+. +++.+.+.. +.. .+..+..++. ++++||||+++.+.+.. + .. .+
T Consensus 89 ~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g-~~~~i~~l~~--~~~livlDe~~~~~~~d--~---~~------~~ 154 (279)
T 1nlf_A 89 ALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPE-WFDGLKRAAE--GRRLMVLDTLRRFHIEE--E---NA------SG 154 (279)
T ss_dssp HHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHH-HHHHHHHHHT--TCSEEEEECGGGGCCSC--T---TC------HH
T ss_pred HHHhhcChhhhhhccCceEEeecCCCCcccCCHH-HHHHHHHhcC--CCCEEEECCHHHhcCCC--c---Cc------hH
Confidence 556543 344443321 222 2455555554 58999999999976421 1 10 12
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCce---eecccceeeeeceEEEEEeecccc--cc-cCCCcccceE
Q 013567 254 LMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPE---VTSGGIALKFFASVRLEIRSTGKI--KS-VKGDEDVGVR 327 (440)
Q Consensus 254 ~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~---~~~gG~~l~~~a~~rl~l~r~~~i--k~-~~g~~~~G~~ 327 (440)
.+.++++.|..++++.|+|||+++|.++... .+++.. ...|+.++.........+.+...- +. .-+++..++.
T Consensus 155 ~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~-~~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi~~~~~~~~ 233 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTGCSIVFLHHASKGAA-MMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFF 233 (279)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC---------------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCccc-ccCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCCChhhcCcE
Confidence 3567788889999999999999999986542 233222 234556664322222223332210 00 0123345677
Q ss_pred EEEEEeeccCCCCCceEEEEEEeCCCcc
Q 013567 328 VRVRVQKSKVSRPYKQAEFEIIFGEGVS 355 (440)
Q Consensus 328 ~~v~v~Knr~~~p~~~~~~~i~~~~Gi~ 355 (440)
++++|.|||.+||+....|.+. ..|+-
T Consensus 234 ~~~~v~K~~~~~~~~~~~~~~~-~~G~l 260 (279)
T 1nlf_A 234 VRFGVSKANYGAPFADRWFRRH-DGGVL 260 (279)
T ss_dssp EEEEEEECSSSSCCCCEEEEEC-GGGCE
T ss_pred EEeeeccccCCCCCCceEEEEc-CCeeE
Confidence 8999999999999987766664 56653
No 28
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.81 E-value=3e-19 Score=169.11 Aligned_cols=208 Identities=22% Similarity=0.236 Sum_probs=137.6
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChh--hhhhhcccccc
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPS--YSKALGVDVEN 197 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~--~a~~lGv~~~~ 197 (440)
.+++++||++.||.+++||+++|++++|+||||||||||+..++.... .++.+++|++.+...... ..+.+|+.+++
T Consensus 8 ~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 87 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEK 87 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHH
T ss_pred ccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHH
Confidence 467899999999999999999999999999999999999555544334 788899999988765442 34556766543
Q ss_pred e------eec------------------CCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHH
Q 013567 198 L------IVC------------------QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQAR 253 (440)
Q Consensus 198 l------~i~------------------~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar 253 (440)
. .+. .....++....+...+...+++++++|+++....... + ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~--d-~~--------- 155 (251)
T 2ehv_A 88 YEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE--E-ER--------- 155 (251)
T ss_dssp HHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS--S-GG---------
T ss_pred HhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC--C-HH---------
Confidence 2 211 1123445555555555667899999999887763110 0 00
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeec-eEEEEEeecccccccCCCcccceEEEEEE
Q 013567 254 LMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA-SVRLEIRSTGKIKSVKGDEDVGVRVRVRV 332 (440)
Q Consensus 254 ~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a-~~rl~l~r~~~ik~~~g~~~~G~~~~v~v 332 (440)
...+.+..+...+++.|+|||+++|..+.... ...+..+.+.+ +..+.+++.. .+.. ..+.+.+
T Consensus 156 ~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~-------~~~~~~i~~~~aD~vi~l~~~~-----~~~~---~~r~l~i 220 (251)
T 2ehv_A 156 KIREVLLKLNTILLEMGVTTILTTEAPDPQHG-------KLSRYGIEEFIARGVIVLDLQE-----KNIE---LKRYVLI 220 (251)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEECCC----C-------CSSSSSCGGGGCSEEEEEEEEE-----CSSS---EEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCCCCcc-------cccccChhhEeeeEEEEEeeec-----cCCe---eEEEEEE
Confidence 02333555556667789999999999765421 11223345566 8888887532 1111 3457899
Q ss_pred eeccCCCCC-ceEEEEEEeCCCccc
Q 013567 333 QKSKVSRPY-KQAEFEIIFGEGVSK 356 (440)
Q Consensus 333 ~Knr~~~p~-~~~~~~i~~~~Gi~~ 356 (440)
.|+|..+.. ....|+|. +.||..
T Consensus 221 ~K~r~~~~~~~~~~~~i~-~~Gi~v 244 (251)
T 2ehv_A 221 RKMRETRHSMKKYPFEIG-PNGIVV 244 (251)
T ss_dssp EEETTCCCCCBEEEEEEE-TTEEEE
T ss_pred EEccCCCcCCceEEEEEC-CCCeEE
Confidence 999876654 56788887 788853
No 29
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.75 E-value=3.5e-17 Score=160.21 Aligned_cols=202 Identities=15% Similarity=0.177 Sum_probs=127.9
Q ss_pred cccccc-CcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhhhhh----hcccc
Q 013567 122 VETFPS-GCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSYSKA----LGVDV 195 (440)
Q Consensus 122 ~~~i~T-Gi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~a~~----lGv~~ 195 (440)
..++|| |++.||.++ +|+++|++++|+||||+|||||+++++..+... +..++|++.|+...+...+. .+++.
T Consensus 14 ~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~ 92 (296)
T 1cr0_A 14 SVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL 92 (296)
T ss_dssp CCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG
T ss_pred cCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh
Confidence 558999 999999999 999999999999999999999977776666544 44799999987543221110 01111
Q ss_pred --------------------------cceeecC---CCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhh
Q 013567 196 --------------------------ENLIVCQ---PDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQ 246 (440)
Q Consensus 196 --------------------------~~l~i~~---~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~ 246 (440)
.++.+.+ ..+..++...+.......++++++||+++.+.... . . .
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~--~-~-~-- 166 (296)
T 1cr0_A 93 RQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS--G-E-S-- 166 (296)
T ss_dssp GGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC---------------
T ss_pred hhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC--C-C-C--
Confidence 1233433 25677777777665566789999999999876310 0 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc------cccCCceeecccceeeeeceEEEEEeecccccccCC
Q 013567 247 QIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG------VYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKG 320 (440)
Q Consensus 247 q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig------~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g 320 (440)
.....+..+++.|+.++++.++|||+++|..+..+ ..........|+..+.+.++..+.+.+...-
T Consensus 167 ---d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~~----- 238 (296)
T 1cr0_A 167 ---DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQG----- 238 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--------
T ss_pred ---CHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCccc-----
Confidence 01123566778888899999999999999963110 0001112234566788899999999875421
Q ss_pred CcccceEEEEEEeeccC-CCC
Q 013567 321 DEDVGVRVRVRVQKSKV-SRP 340 (440)
Q Consensus 321 ~~~~G~~~~v~v~Knr~-~~p 340 (440)
+. ...+.+.|.|+|. .+.
T Consensus 239 ~~--~~~~~l~i~K~R~~g~~ 257 (296)
T 1cr0_A 239 DM--PNLVLVRILKCRFTGDT 257 (296)
T ss_dssp ------CEEEEEEEETTTCCC
T ss_pred CC--CCeEEEEEEccccCCCC
Confidence 10 1246899999995 654
No 30
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.73 E-value=6.2e-17 Score=171.34 Aligned_cols=206 Identities=22% Similarity=0.187 Sum_probs=145.9
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc--
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE-- 196 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~-- 196 (440)
.+++++||++.||.+|+||+++|++++|.|+||+|||||+.+++......+..++|+.++++..+. .+.++|++.+
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~ 338 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEM 338 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHH
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHH
Confidence 456789999999999999999999999999999999999777666555556678999998875443 2344565532
Q ss_pred ----ceeecCC----CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 013567 197 ----NLIVCQP----DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268 (440)
Q Consensus 197 ----~l~i~~~----~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~ 268 (440)
.+.+.+. .+..+....+...+...+++++++|+++.+... .. + .+ ....+..|...+++
T Consensus 339 ~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~~---~-----~~---~~~~i~~ll~~l~~ 405 (525)
T 1tf7_A 339 ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG--VS---N-----NA---FRQFVIGVTGYAKQ 405 (525)
T ss_dssp HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--SC---H-----HH---HHHHHHHHHHHHHH
T ss_pred HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh--CC---h-----HH---HHHHHHHHHHHHHh
Confidence 2223221 355665555544455578999999988887642 11 1 11 34556666677788
Q ss_pred cCCEEEEEeccccccccccCCceeeccc-ceeeeeceEEEEEeecccccccCCCcccceEEEEEEeeccCCCC-CceEEE
Q 013567 269 AGCTLIFLNQIRYKIGVYYGNPEVTSGG-IALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRP-YKQAEF 346 (440)
Q Consensus 269 ~~~tVI~inhl~~~ig~~~~~~~~~~gG-~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~Knr~~~p-~~~~~~ 346 (440)
.|+|||+++|.....+. ..+. ..+.+.++..+.+++.+. +. ...+.++|+|+|..+. ....+|
T Consensus 406 ~g~tvilvsh~~~~~~~-------~~~~~~~l~~~~D~vi~L~~ge~-----~~---~~~R~l~v~K~R~~~~~~~~~~f 470 (525)
T 1tf7_A 406 EEITGLFTNTSDQFMGA-------HSITDSHISTITDTIILLQYVEI-----RG---EMSRAINVFKMRGSWHDKAIREF 470 (525)
T ss_dssp TTCEEEEEEECSSSSCC-------CSSCSSCCTTTCSEEEEEEEEEE-----TT---EEEEEEEEEEESSSCCCCBCEEE
T ss_pred CCCEEEEEECcccccCc-------ccccCcccceeeeEEEEEEEEEe-----CC---EEEEEEEEEECCCCCCCCCEEEE
Confidence 89999999999754432 1222 556788899998887531 11 2456889999998887 577899
Q ss_pred EEEeCCCcc
Q 013567 347 EIIFGEGVS 355 (440)
Q Consensus 347 ~i~~~~Gi~ 355 (440)
+|. ++||.
T Consensus 471 ~i~-~~Gi~ 478 (525)
T 1tf7_A 471 MIS-DKGPD 478 (525)
T ss_dssp EEC-SSCEE
T ss_pred EEc-CCCEE
Confidence 997 89996
No 31
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.63 E-value=1.9e-15 Score=145.89 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=67.5
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhhccccc
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKALGVDVE 196 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~lGv~~~ 196 (440)
.++||+++||.+|+||+++|.++.|.|.||+|||||++|++.+.++.+..++||+.+++.... .++.+|++++
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~ 76 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVI 76 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHH
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHH
Confidence 479999999999999999999999999999999999999999999999999999999988775 5677888864
No 32
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=8.7e-14 Score=147.18 Aligned_cols=151 Identities=15% Similarity=0.239 Sum_probs=105.3
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHH-HHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccc
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHA-IAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVEN 197 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~l-i~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~ 197 (440)
.+.+++||++.||.+..||+++|++++|.||||||||||+..+ +.++..++.+++|+++++.... ..++.+|+.+++
T Consensus 17 ~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAK 96 (525)
T ss_dssp SCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHH
T ss_pred ccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHH
Confidence 4678999999999998789999999999999999999997666 5788887999999999874322 245678887654
Q ss_pred ------eeecCCC------------CHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHH
Q 013567 198 ------LIVCQPD------------NGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQAL 259 (440)
Q Consensus 198 ------l~i~~~~------------~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l 259 (440)
+...... ..++........+..+.++++++|++.++.+...++ . ..+..+
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD---------~---~~~~~l 164 (525)
T 1tf7_A 97 LVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDAS---------S---VVRREL 164 (525)
T ss_dssp HHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCH---------H---HHHHHH
T ss_pred hhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCH---------H---HHHHHH
Confidence 2222110 123333333333445678999999999887531111 0 112334
Q ss_pred HHHHHHHHhcCCEEEEEecccccc
Q 013567 260 RKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 260 ~~L~~lak~~~~tVI~inhl~~~i 283 (440)
..+...+++.|+|||+++|..+.+
T Consensus 165 ~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 165 FRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHHHHTCEEEEEEECSSSS
T ss_pred HHHHHHHHHCCCEEEEEecCCCCc
Confidence 444444556799999999998754
No 33
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.52 E-value=5.5e-15 Score=146.22 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=95.1
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC--CCCCChhhhhhhcccccceeec
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA--EHAFDPSYSKALGVDVENLIVC 201 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~--E~~~~~~~a~~lGv~~~~l~i~ 201 (440)
.++||++.||.+| ||+++|.+++|+||||+|||+||++++.. .+..++|++. ++..+ . +
T Consensus 105 ~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v~----------~-----~ 165 (331)
T 2vhj_A 105 ELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEPLS----------G-----Y 165 (331)
T ss_dssp TCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSST----------T-----C
T ss_pred ccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhhhh----------h-----h
Confidence 4789999999999 99999999999999999999999999876 5678899998 33211 0 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567 202 QPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280 (440)
Q Consensus 202 ~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~ 280 (440)
+ ...++++..+.+.+.+.+ ++|||++..+.+...... ..+.+.+.+++.++.|..++++.++++|++++..
T Consensus 166 ~-~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s-----~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~ 236 (331)
T 2vhj_A 166 N-TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNT-----TSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (331)
T ss_dssp B-CCHHHHHHHHHHHHHHCS--EEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred h-cCHHHHHHHHHHHHhhCC--EEEEeccccccccccccc-----ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence 1 456666665555555444 999999999875322111 1223355678899999999999999999987743
No 34
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.48 E-value=8.1e-15 Score=147.89 Aligned_cols=251 Identities=13% Similarity=0.191 Sum_probs=154.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---h---hhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---S---YSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~---~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.|||||||||| ++++.++.++..|.++++++..... . +.+.+|+.+++..++...++.+.+..
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTL-lr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~ 128 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTL-IRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL 128 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHH-HHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHH
Confidence 478999999999999999999 9999999999999999998865432 1 24678999998877777677655433
Q ss_pred H---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567 213 A---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S 256 (440)
Q Consensus 213 i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~ 256 (440)
. .+++. .+-++......+ .++++ |++|+...||++ .
T Consensus 129 ~~~~~~~~~~~~~~~v~~lL~-----~vgL~~~~~~~~-~~LSG--GqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 129 PLELDNTPKDEVKRRVTELLS-----LVGLGDKHDSYP-SNLSG--GQKQRVAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp HHHHSCCCHHHHHHHHHHHHH-----HHTCGGGTTCCT-TTSCH--HHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHH-----HcCCchHhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 2 22221 222333333343 56666 888988888887 3
Q ss_pred HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeeeceEEEEEeecccccccCCCcccceEEEEEEe---
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQ--- 333 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~a~~rl~l~r~~~ik~~~g~~~~G~~~~v~v~--- 333 (440)
.++..|..+.++.|+|||+++|..+.+..+++.......|+.+.......++-....... ...++.......-
T Consensus 201 ~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~----~~~~~~~~~~~~~~~~ 276 (366)
T 3tui_C 201 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA----QKFIQSTLHLDIPEDY 276 (366)
T ss_dssp HHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHH----HHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHH----HHHHhhcccccCchhh
Confidence 455556666677899999999998877666666666667766654432221111100000 0000000000000
Q ss_pred ecc---CCCCCceEEEEEEeCCCcccchhhhhHHHHcccee--ccCceEEeCceecc----------ccHHHHHHHHHhC
Q 013567 334 KSK---VSRPYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVV--RKGAWYSYGDQRLG----------QGRDKALQYLRDN 398 (440)
Q Consensus 334 Knr---~~~p~~~~~~~i~~~~Gi~~~~~i~~~~~~~~ii~--k~G~~~~~~~~~~g----------q~~~~~~~~L~e~ 398 (440)
..+ ...+.....+++.|.........+.+++.+.++-. -.|+...+.+..+| +..+++.+||+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~il~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 356 (366)
T 3tui_C 277 QERLQAEPFTDCVPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 356 (366)
T ss_dssp HHHCBSSCCTTCCEEEEEEEEHHHHSSCHHHHHHHHHTCEEEEEEEEEEESSSCEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hhhhccccccCCCceEEEEecCcccchhHHHHHHHHcCCCeEEEEeeEEEECCEEEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 000 00112234566666544444555667777776532 26888888887777 2356789999987
Q ss_pred cHHH
Q 013567 399 PLLQ 402 (440)
Q Consensus 399 ~~~~ 402 (440)
...+
T Consensus 357 ~~~~ 360 (366)
T 3tui_C 357 HVKV 360 (366)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 6443
No 35
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.41 E-value=4.4e-13 Score=135.01 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=110.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC-----ChhhhhhhcccccceeecCCCCHHHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF-----DPSYSKALGVDVENLIVCQPDNGEMALE-- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~-----~~~~a~~lGv~~~~l~i~~~~~~ee~l~-- 211 (440)
-+++|+++.|.|||||||||| +++++++.++..|.++++++... .+...+.+|+.+++..+++..++.+.+.
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~ 104 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTL-LRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHH-HHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred EEcCCCEEEEECCCCchHHHH-HHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence 478999999999999999999 99999999999999999987541 1234567999998877766666655432
Q ss_pred -------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHH
Q 013567 212 -------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQA 258 (440)
Q Consensus 212 -------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~ 258 (440)
.+.++++ .+-++.+..-.+ .++++ |++|+...+|++ +..
T Consensus 105 l~~~~~~~~~~~~~v~~~l~-----~~gL~~~~~r~~-~~LSG--Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~ 176 (359)
T 3fvq_A 105 LGNGKGRTAQERQRIEAMLE-----LTGISELAGRYP-HELSG--GQQQRAALARALAPDPELILLDEPFSALDEQLRRQ 176 (359)
T ss_dssp STTSSCCSHHHHHHHHHHHH-----HHTCGGGTTSCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHH-----HcCCchHhcCCh-hhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 2222222 222344444443 66776 888999889887 334
Q ss_pred H-HHHHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 259 L-RKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 259 l-~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
+ ..|..+.++.|+|||+++|..+.+..+++.......|+....
T Consensus 177 l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~ 220 (359)
T 3fvq_A 177 IREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT 220 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence 4 457777788899999999998766555555555666665543
No 36
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.39 E-value=3.8e-13 Score=136.42 Aligned_cols=154 Identities=16% Similarity=0.276 Sum_probs=111.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI----- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~----- 212 (440)
-+++|+++.|.|||||||||| +++++++.++..|.++++++..... ...+.+|+.+++..+++..++.+.+..
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~ 103 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTL-LRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT
T ss_pred EECCCCEEEEEcCCCchHHHH-HHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999 9999999999999999998865432 234678999998877777777655432
Q ss_pred ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
+.++++ .+-++.+..-.+ .++++ |++|+...+|++ .+++..
T Consensus 104 ~~~~~~~~~~v~~~l~-----~~~L~~~~~r~p-~~LSG--GqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~ 175 (381)
T 3rlf_A 104 GAKKEVINQRVNQVAE-----VLQLAHLLDRKP-KALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 175 (381)
T ss_dssp TCCHHHHHHHHHHHHH-----HTTCGGGTTCCG-GGSCH--HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----HcCCchhhcCCh-hHCCH--HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 222222 222344444443 66766 899999999987 234455
Q ss_pred HHHHHHhcCCEEEEEeccccccccccCCceeecccceeee
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKF 301 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~ 301 (440)
|.++.++.|+|||+++|..+.+..+++.......|+....
T Consensus 176 l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp HHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 6666677899999999998766555555555566655543
No 37
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.36 E-value=3.6e-12 Score=121.21 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=93.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-+++|++++|.|||||||||| ++++.++.++..|.++++++...... +.+.+|+.+++..+++..++.+.+.
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~ 105 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTM-LNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE 105 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHH
Confidence 478999999999999999999 99999999999999999987543221 1345899888877666656655443
Q ss_pred H------------------HHHHHhcCCcceEEEec-ccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567 212 I------------------ADRMCRSGAIDLICVDS-VSALTPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 212 ~------------------i~~l~~~~~~~lvVIDs-l~~l~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
. +.+++...+ ++. +.... ..++++ |++|+...+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~~-~~~LSg--Gq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 106 LPLIFKYRGAMSGEERRKRALECLKMAE-----LEERFANHK-PNQLSG--GQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp HHHHTCSSSCCCHHHHHHHHHHHHHHTT-----CCGGGTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHCC-----CChhhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 2 112221111 122 11222 356665 888988888887
Q ss_pred ----HHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 256 ----SQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 256 ----~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
..++..|..+.++.|.|||+++|..+
T Consensus 178 ~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 34445555555667999999999976
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.35 E-value=1.1e-12 Score=131.88 Aligned_cols=157 Identities=20% Similarity=0.237 Sum_probs=108.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-hhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-PSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-+++|+++.|.|||||||||| +++++++.++..|.++++++...+ +...+.+|+.+++..+++..++.+.+.......
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~ 100 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLF-LELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK 100 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHH-HHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred EEcCCCEEEEECCCCccHHHH-HHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999 999999999999999999876533 234567999999887777778777655422211
Q ss_pred hcC-------CcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhc
Q 013567 218 RSG-------AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKA 269 (440)
Q Consensus 218 ~~~-------~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~ 269 (440)
... -.+.+-++.+....+ .++++ |++|+...+|++ ..+...|..+.++.
T Consensus 101 ~~~~~~~v~~~l~~~~L~~~~~~~~-~~LSg--Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~ 177 (348)
T 3d31_A 101 KIKDPKRVLDTARDLKIEHLLDRNP-LTLSG--GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177 (348)
T ss_dssp CCCCHHHHHHHHHHTTCTTTTTSCG-GGSCH--HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCchHhcCCh-hhCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc
Confidence 000 011222333333332 56665 888888888887 33444555556677
Q ss_pred CCEEEEEeccccccccccCCceeeccccee
Q 013567 270 GCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 270 ~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
++|||+++|..+.+..+++.......|+..
T Consensus 178 g~tii~vTHd~~~~~~~adri~vl~~G~i~ 207 (348)
T 3d31_A 178 KLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (348)
T ss_dssp TCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999987655455544455555554
No 39
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.34 E-value=2e-12 Score=130.34 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=106.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHH-----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEI----- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~----- 212 (440)
-+++|+++.|.|||||||||| +++++++.++..|.++++++..... ...+.+|+.+++..+++..++.+.+..
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTT-LLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR 103 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred EEcCCCEEEEEcCCCchHHHH-HHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999 9999999999999999998764332 234678999888777666666655432
Q ss_pred ----------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 213 ----------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 213 ----------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
+.++++ .+-++.+....+ .++++ |++|+...+|++ ..+...
T Consensus 104 ~~~~~~~~~~v~~~l~-----~~~L~~~~~r~~-~~LSg--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 175 (359)
T 2yyz_A 104 RISKDEVEKRVVEIAR-----KLLIDNLLDRKP-TQLSG--GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAE 175 (359)
T ss_dssp CSHHHHTTHHHHHHHH-----HTTCGGGTTSCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----HcCCchHhcCCh-hhCCH--HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 222222 222344433332 56666 888888888887 234444
Q ss_pred HHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
|+.+.++.++|||+++|..+.+..+++.......|+...
T Consensus 176 l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 214 (359)
T 2yyz_A 176 IKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ 214 (359)
T ss_dssp HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 555666779999999999876655555555555565543
No 40
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.33 E-value=1.4e-12 Score=131.34 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=108.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-+++|+++.|.|||||||||| +++++++.++..|.++++++..... ...+.+|+.+++..+++..++.+.+.......
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~ 115 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTI-LRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK 115 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT
T ss_pred EECCCCEEEEECCCCCcHHHH-HHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999 9999999999999999998764322 24567899998877776667766554321110
Q ss_pred h----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567 218 R----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA 266 (440)
Q Consensus 218 ~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la 266 (440)
. ..-.+.+-++.+....+ .++++ |++|+...+|++ .++...|+.+.
T Consensus 116 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~-~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 192 (355)
T 1z47_A 116 RVPKDEMDARVRELLRFMRLESYANRFP-HELSG--GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192 (355)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTSCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCCc-ccCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 00011222344443332 56666 888998888887 23444555666
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
++.++|||+++|..+.+..+++.......|+...
T Consensus 193 ~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 226 (355)
T 1z47_A 193 DEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ 226 (355)
T ss_dssp HHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 6779999999999876655555555555565543
No 41
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.33 E-value=1.9e-12 Score=130.70 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=107.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-+++|+++.|.|||||||||| +++++++.++..|.+++++...... ...+.+|+.+++..+++..++.+.+.......
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTL-LYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR 103 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred EECCCCEEEEECCCCchHHHH-HHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999 9999999999999999998764332 23467899998877776667766554321110
Q ss_pred h----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHH
Q 013567 218 R----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNA 266 (440)
Q Consensus 218 ~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~la 266 (440)
. ..-.+.+-++.+..-.+ .++++ |++|+...+|++ ..+...|..+.
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~-~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 104 KAPREEIDKKVREVAKMLHIDKLLNRYP-WQLSG--GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhhCCh-hhCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 0 00011222344433332 56666 888998889887 23444555566
Q ss_pred HhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
++.++|||+++|..+.+..+++.......|+...
T Consensus 181 ~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 214 (362)
T 2it1_A 181 KELGITTVYVTHDQAEALAMADRIAVIREGEILQ 214 (362)
T ss_dssp HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 6779999999999876655555555555565543
No 42
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.32 E-value=2.4e-12 Score=130.33 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=101.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHH------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALE------ 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~------ 211 (440)
-+++|+++.|.|||||||||| +++++++.++..|.++++++..... ...+.+|+.+++..+++..++.+.+.
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 111 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTT-LRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK 111 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred EECCCCEEEEECCCCChHHHH-HHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999 9999999999999999998764332 23467898888776665556554432
Q ss_pred ---------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHH
Q 013567 212 ---------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRK 261 (440)
Q Consensus 212 ---------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~ 261 (440)
.+.++++ .+-++.+....+ .++++ |++|+...+|++ .++...
T Consensus 112 ~~~~~~~~~~v~~~l~-----~~~L~~~~~r~~-~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 183 (372)
T 1v43_A 112 KFPKDEIDKRVRWAAE-----LLQIEELLNRYP-AQLSG--GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 183 (372)
T ss_dssp CCCHHHHHHHHHHHHH-----HTTCGGGTTSCT-TTCCS--SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----HcCChhHhcCCh-hhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 2223322 222334433333 56666 888888888887 234445
Q ss_pred HHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 262 MSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 262 L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
|+.+.++.++|||+++|..+.+..+++.......|+..
T Consensus 184 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 184 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 55566677999999999987655455544555555554
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.31 E-value=1.5e-12 Score=131.98 Aligned_cols=158 Identities=15% Similarity=0.245 Sum_probs=107.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-------hhhhhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-------PSYSKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-------~~~a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-+++|+++.|.|||||||||| +++++++.++..|.++++++...+ +...+.+|+.+++..+++..++.+.+.
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 103 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTT-LRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA 103 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHH-HHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred EEcCCCEEEEECCCCcHHHHH-HHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHH
Confidence 467999999999999999999 999999999999999999875422 123467899998877777677766554
Q ss_pred HHHHHHh----------cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567 212 IADRMCR----------SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR 260 (440)
Q Consensus 212 ~i~~l~~----------~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~ 260 (440)
....... ..-.+.+-++.+....+ .++++ |++|+...+|++ .++..
T Consensus 104 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-~~LSG--Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 180 (372)
T 1g29_1 104 FPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSG--GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180 (372)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-GGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-ccCCH--HHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence 3211100 00012222344443332 56666 888998888887 23444
Q ss_pred HHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
.|..+.++.++|||+++|..+.+..+++.......|+...
T Consensus 181 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 5556666779999999999876655555555555565543
No 44
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.31 E-value=9.4e-12 Score=121.10 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=96.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC-h----hhhhhhccccccee--ecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD-P----SYSKALGVDVENLI--VCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~-~----~~a~~lGv~~~~l~--i~~~~~~ee~l~ 211 (440)
-+++|++++|.|||||||||| ++++.++.++..|.++++++.... . .+.+.+|+.+++.. +. ..++.+.+.
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTL-l~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~ 107 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTL-FQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVS 107 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHHHH
Confidence 478999999999999999999 999999999999999999886531 1 24567888887642 22 334443322
Q ss_pred ---------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567 212 ---------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------- 255 (440)
Q Consensus 212 ---------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------- 255 (440)
.+.+++... -++.+.... ..++++ |++|+...||++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~-----~L~~~~~~~-~~~LSg--GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~ 179 (275)
T 3gfo_A 108 FGAVNMKLPEDEIRKRVDNALKRT-----GIEHLKDKP-THCLSF--GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179 (275)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHT-----TCGGGTTSB-GGGSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHc-----CCchhhcCC-cccCCH--HHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 222222221 123333332 255555 788888888876
Q ss_pred HHHHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccce
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIA 298 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~ 298 (440)
..++..|..+.++.|+|||+++|..+.+..+++.......|+.
T Consensus 180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i 222 (275)
T 3gfo_A 180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222 (275)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEE
T ss_pred HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 2344444555435599999999998876554443333334433
No 45
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.30 E-value=1.5e-12 Score=131.19 Aligned_cols=152 Identities=19% Similarity=0.259 Sum_probs=105.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC------hhhhhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD------PSYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~------~~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|+++.|.|||||||||| +++++++.++..|.++++++.... +...+.+|+.+++..+++..++.+.+..
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 105 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTF-MRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF 105 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHH-HHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred EECCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHH
Confidence 478999999999999999999 999999999999999999865322 2245678888887766655566554332
Q ss_pred ---------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567 213 ---------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S 256 (440)
Q Consensus 213 ---------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~ 256 (440)
+.++++ .+-++.+....+ .++++ |++|+...+|++ .
T Consensus 106 ~~~~~~~~~~~~~~~v~~~l~-----~~~L~~~~~~~~-~~LSG--Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~ 177 (353)
T 1oxx_K 106 PLTNMKMSKEEIRKRVEEVAK-----ILDIHHVLNHFP-RELSG--AQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177 (353)
T ss_dssp GGTTSSCCHHHHHHHHHHHHH-----HTTCGGGTTSCG-GGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred HHHHcCCCHHHHHHHHHHHHH-----HcCCchHhcCCh-hhCCH--HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 222222 222334433332 56666 888888888887 3
Q ss_pred HHHHHHHHHHHhcCCEEEEEeccccccccccCCceeeccccee
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIAL 299 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l 299 (440)
++...|+.+.++.++|||+++|..+.+..+++.......|+..
T Consensus 178 ~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 4444555666678999999999987665555555555555554
No 46
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.30 E-value=4.6e-12 Score=122.03 Aligned_cols=146 Identities=20% Similarity=0.236 Sum_probs=93.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKALGVDVENLIVCQPDNGEMALEIADRM 216 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l 216 (440)
-+++|++++|.|||||||||| +++++++.++..|.+++++...... .+.+.+|+.+++..+....++.+.+.....+
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 115 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTT-LRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF 115 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHH
T ss_pred EEcCCcEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHH
Confidence 478999999999999999999 9999999999999999998754322 2456688888877666555666554432111
Q ss_pred Hhc----------CCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HHHHHHHHHHH
Q 013567 217 CRS----------GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQALRKMSGNA 266 (440)
Q Consensus 217 ~~~----------~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~~l~~L~~la 266 (440)
... .-.+.+-++...... ..++++ |++|+...++++ ...+..+....
T Consensus 116 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 116 YASSSSEIEEMVERATEIAGLGEKIKDR-VSTYSK--GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192 (256)
T ss_dssp HCCCHHHHHHHHHHHHHHHCCGGGGGSB-GGGCCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHCCCchHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 000 001112223222222 245554 788888888876 22333333333
Q ss_pred HhcCCEEEEEeccccccccccC
Q 013567 267 SKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 267 k~~~~tVI~inhl~~~ig~~~~ 288 (440)
++.+.|||+++|..+.+...++
T Consensus 193 ~~~g~tiiivtHd~~~~~~~~d 214 (256)
T 1vpl_A 193 SQEGLTILVSSHNMLEVEFLCD 214 (256)
T ss_dssp HHTTCEEEEEECCHHHHTTTCS
T ss_pred HhCCCEEEEEcCCHHHHHHHCC
Confidence 4459999999999876554333
No 47
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.29 E-value=3.1e-12 Score=123.79 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=93.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC----Ch-hhhhhhcccccceeecCCCCHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF----DP-SYSKALGVDVENLIVCQPDNGEMALEIA 213 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~----~~-~~a~~lGv~~~~l~i~~~~~~ee~l~~i 213 (440)
-+++|++++|.|||||||||| +++++++.++..|.+++++.... .. .+.+.+|+.+++..++...++.+.+...
T Consensus 46 ~i~~Gei~~liG~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~ 124 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTF-LRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA 124 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EEcCCCEEEEEcCCCCcHHHH-HHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 478999999999999999999 99999999999999999986542 11 2356789888877666555665554331
Q ss_pred ----------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------H
Q 013567 214 ----------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------S 256 (440)
Q Consensus 214 ----------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~ 256 (440)
.++++. +-++...... ..++++ |++|+...+|++ .
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~-----~~L~~~~~~~-~~~LSg--GqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (263)
T 2olj_A 125 PMKVRKWPREKAEAKAMELLDK-----VGLKDKAHAY-PDSLSG--GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196 (263)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHH-----TTCGGGTTSC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH-----CCCchHhcCC-hhhCCH--HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 111111 1122222222 245555 888888888877 2
Q ss_pred HHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 257 QALRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 257 ~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
.++..|..+.++ +.|||+++|..+.+...++
T Consensus 197 ~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d 227 (263)
T 2olj_A 197 EVLSVMKQLANE-GMTMVVVTHEMGFAREVGD 227 (263)
T ss_dssp HHHHHHHHHHHT-TCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCC
Confidence 334444444444 9999999999776544333
No 48
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.29 E-value=9.2e-12 Score=120.59 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=94.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMALE---- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~l~---- 211 (440)
-+++|++++|.|||||||||| ++++.++.++..|.+++++...... .+.+.+++.+++..+..+.++.+.+.
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 111 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTL-LRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRA 111 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHH-HHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGT
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhh
Confidence 478999999999999999999 9999999999999999998765432 24556777776554433444443322
Q ss_pred ---------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHH-------------------------
Q 013567 212 ---------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQ------------------------- 257 (440)
Q Consensus 212 ---------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~------------------------- 257 (440)
.+.+++...+ ++.+..-. ..++++ |++|+...+|++..
T Consensus 112 ~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--Gq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~ 183 (266)
T 4g1u_C 112 PYGGSQDRQALQQVMAQTD-----CLALAQRD-YRVLSG--GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ 183 (266)
T ss_dssp TSCSTTHHHHHHHHHHHTT-----CSTTTTSB-GGGCCH--HHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHH
T ss_pred hcCcHHHHHHHHHHHHHcC-----ChhHhcCC-cccCCH--HHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHH
Confidence 1122211111 11111111 133444 66666666665532
Q ss_pred --HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 258 --ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 258 --~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
++..|..+.++.++|||+++|..+.+..+++.......|+...
T Consensus 184 ~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 184 QHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 3444455555667899999999876655555444555555543
No 49
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.28 E-value=2.8e-12 Score=123.90 Aligned_cols=137 Identities=20% Similarity=0.209 Sum_probs=92.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC------------Ch----hhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF------------DP----SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~------------~~----~~a~~lGv~~~~l~i~~ 202 (440)
-+++|++++|.|||||||||| +++++++.++..|.+++++.... .. .+.+.+|+.+++..++.
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 106 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTF-LRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 106 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCC
Confidence 478999999999999999999 99999999999999999987543 11 23456899888866666
Q ss_pred CCCHHHHHHHH----------------HHHHhcCCcceEEEecc-cccCCchhhcccchhhhHHHHHHHH----------
Q 013567 203 PDNGEMALEIA----------------DRMCRSGAIDLICVDSV-SALTPRAEIEGEIGMQQIGLQARLM---------- 255 (440)
Q Consensus 203 ~~~~ee~l~~i----------------~~l~~~~~~~lvVIDsl-~~l~~~~el~~~~g~~q~~~~ar~l---------- 255 (440)
..++.+.+... .++++ .+-++.. .... ..++++ |++|+...+|++
T Consensus 107 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~L~~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLD 178 (262)
T 1b0u_A 107 HMTVLENVMEAPIQVLGLSKHDARERALKYLA-----KVGIDERAQGKY-PVHLSG--GQQQRVSIARALAMEPDVLLFD 178 (262)
T ss_dssp TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-----HTTCCHHHHTSC-GGGSCH--HHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHH-----HcCCCchhhcCC-cccCCH--HHHHHHHHHHHHhcCCCEEEEe
Confidence 65665554431 11111 1112222 2222 255665 888888888887
Q ss_pred -----------HHHHHHHHHHHHhcCCEEEEEecccccccc
Q 013567 256 -----------SQALRKMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 256 -----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
..++..|..+.+ .|.|||+++|..+.+..
T Consensus 179 EPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~~~~~~ 218 (262)
T 1b0u_A 179 EPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARH 218 (262)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHH
Confidence 233344444444 49999999999775543
No 50
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.28 E-value=4e-12 Score=120.00 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=90.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------h-hhhhcccccceeecCCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------Y-SKALGVDVENLIVCQPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~-a~~lGv~~~~l~i~~~~~~ee~l~ 211 (440)
-+++|++++|.|||||||||| +++++++.++..|.+++++....... + .+.+|+.+++..++...++.+.+.
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~ 104 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTL-LYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVI 104 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHH-HHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHH
Confidence 478999999999999999999 99999999999999999987643211 1 256899888876666566655443
Q ss_pred HH---------------HHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------
Q 013567 212 IA---------------DRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------- 255 (440)
Q Consensus 212 ~i---------------~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------- 255 (440)
.. .++++. +-++...... ..++++ |++|+...++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~-~~~LSg--Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (224)
T 2pcj_A 105 VPMLKMGKPKKEAKERGEYLLSE-----LGLGDKLSRK-PYELSG--GEQQRVAIARALANEPILLFADEPTGNLDSANT 176 (224)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH-----TTCTTCTTCC-GGGSCH--HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred hHHHHcCCCHHHHHHHHHHHHHH-----cCCchhhhCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence 32 111111 1122222222 245555 778887777776
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 256 SQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 256 ~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
..++..|..+.++ |.|||+++|..+.+
T Consensus 177 ~~~~~~l~~l~~~-g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 177 KRVMDIFLKINEG-GTSIVMVTHERELA 203 (224)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred HHHHHHHHHHHHC-CCEEEEEcCCHHHH
Confidence 2333444444444 99999999997644
No 51
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.26 E-value=1.9e-11 Score=116.60 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=92.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhcccccceeecCCCCHHHHHH------
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVENLIVCQPDNGEMALE------ 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~~l~i~~~~~~ee~l~------ 211 (440)
-+++ ++++|.|||||||||| +++++++.++..|.+++++...... ...+.+|+.+++..++...++.+.+.
T Consensus 21 ~i~~-e~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 98 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVF-LELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV 98 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHH-HHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred EECC-EEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence 4788 9999999999999999 9999999999999999998654321 23456888888766555555544432
Q ss_pred -------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHH
Q 013567 212 -------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMS 263 (440)
Q Consensus 212 -------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~ 263 (440)
.+.++++..+ ++...... ..++++ |++|+...+|++ ..++..|.
T Consensus 99 ~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--GqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~ 170 (240)
T 2onk_A 99 ERVERDRRVREMAEKLG-----IAHLLDRK-PARLSG--GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170 (240)
T ss_dssp CHHHHHHHHHHHHHTTT-----CTTTTTCC-GGGSCH--HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcC-----CHHHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1222332222 22222222 245655 888888888887 23444445
Q ss_pred HHHHhcCCEEEEEecccccccc
Q 013567 264 GNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 264 ~lak~~~~tVI~inhl~~~ig~ 285 (440)
.+.++.|.|||+++|..+.+..
T Consensus 171 ~l~~~~g~tvi~vtHd~~~~~~ 192 (240)
T 2onk_A 171 FVQREFDVPILHVTHDLIEAAM 192 (240)
T ss_dssp HHHHHHTCCEEEEESCHHHHHH
T ss_pred HHHHhcCCEEEEEeCCHHHHHH
Confidence 5555669999999999765543
No 52
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.26 E-value=2.4e-11 Score=116.92 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=88.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh----hhhhhhcccccceeecCCCCHHHHHH---
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP----SYSKALGVDVENLIVCQPDNGEMALE--- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~----~~a~~lGv~~~~l~i~~~~~~ee~l~--- 211 (440)
-+++|++++|.|||||||||| ++++.++.++..|.+++++...... .+.+.+|+.+++..++...++.+.+.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 107 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTL-INVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE 107 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred EEeCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence 478999999999999999999 9999999999999999998754321 12345787777654443333333322
Q ss_pred -------------------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------
Q 013567 212 -------------------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM----------- 255 (440)
Q Consensus 212 -------------------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l----------- 255 (440)
.+.++++..+ ++....-. ..++++ |++|+...++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----l~~~~~~~-~~~LSg--GqkQrv~iAraL~~~p~lllLDE 179 (257)
T 1g6h_A 108 ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----LSHLYDRK-AGELSG--GQMKLVEIGRALMTNPKMIVMDE 179 (257)
T ss_dssp TSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----CGGGTTSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEES
T ss_pred hhhccCcccccccccccCCHHHHHHHHHHHHHHcC-----CchhhCCC-chhCCH--HHHHHHHHHHHHHcCCCEEEEeC
Confidence 1222222111 22222222 244554 778888777776
Q ss_pred ----------HHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 256 ----------SQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 256 ----------~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
..++..|..+. +.|.|||+++|..+.+...++
T Consensus 180 Pts~LD~~~~~~l~~~l~~l~-~~g~tvi~vtHd~~~~~~~~d 221 (257)
T 1g6h_A 180 PIAGVAPGLAHDIFNHVLELK-AKGITFLIIEHRLDIVLNYID 221 (257)
T ss_dssp TTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECSCCSTTGGGCS
T ss_pred CccCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHHHHHHhCC
Confidence 23333444443 449999999999876654333
No 53
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.26 E-value=1.4e-11 Score=119.22 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=89.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccce-eecCCCCHHHHHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENL-IVCQPDNGEMALEIA---- 213 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l-~i~~~~~~ee~l~~i---- 213 (440)
-+++|++++|.|||||||||| ++++.++.++..|.+++++.......+.+.+|+.+++. ......++.+.+...
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTL-l~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 107 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTL-LQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF 107 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc
Confidence 478999999999999999999 99999999999999999886543223455688888763 222334555444321
Q ss_pred ----------HHHHhcCCcceEEEe--cccccCCchhhcccchhhhHHHHHHHH---------------------HHHHH
Q 013567 214 ----------DRMCRSGAIDLICVD--SVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALR 260 (440)
Q Consensus 214 ----------~~l~~~~~~~lvVID--sl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~ 260 (440)
.+++.. +-++ ...... ..++++ |++|+...++++ ..++.
T Consensus 108 ~~~~~~~~~~~~~l~~-----~gl~~~~~~~~~-~~~LSg--Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~ 179 (266)
T 2yz2_A 108 YPDRDPVPLVKKAMEF-----VGLDFDSFKDRV-PFFLSG--GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR 179 (266)
T ss_dssp CTTSCSHHHHHHHHHH-----TTCCHHHHTTCC-GGGSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-----cCcCCcccccCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHH
Confidence 111111 1122 222222 245555 788888888877 23344
Q ss_pred HHHHHHHhcCCEEEEEecccccccc
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKIGV 285 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~ig~ 285 (440)
.|..+.++ +.|||+++|..+.+..
T Consensus 180 ~l~~l~~~-g~tii~vtHd~~~~~~ 203 (266)
T 2yz2_A 180 IVEKWKTL-GKTVILISHDIETVIN 203 (266)
T ss_dssp HHHHHHHT-TCEEEEECSCCTTTGG
T ss_pred HHHHHHHc-CCEEEEEeCCHHHHHH
Confidence 44444444 9999999999876543
No 54
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.19 E-value=4.3e-11 Score=116.66 Aligned_cols=150 Identities=15% Similarity=0.157 Sum_probs=92.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC--C--h-hhhhhhcccccceeec--CCCCHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF--D--P-SYSKALGVDVENLIVC--QPDNGEMALE 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~--~--~-~~a~~lGv~~~~l~i~--~~~~~ee~l~ 211 (440)
-+++|++++|.|||||||||| +++++++.++..|.+++++.... . . .+.+.+|+.+++..+. ...++.+.+.
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~ 121 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTL-LNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVI 121 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHH
Confidence 478999999999999999999 99999999999999999987543 1 1 2445677776653321 1123333221
Q ss_pred -------------------HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH-----------------
Q 013567 212 -------------------IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM----------------- 255 (440)
Q Consensus 212 -------------------~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l----------------- 255 (440)
.+.++++..+ ++...... ..++++ |++|+...+|++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----l~~~~~~~-~~~LSg--GqkqRv~lAraL~~~p~lLlLDEPts~LD 193 (279)
T 2ihy_A 122 SGAFKSIGVYQDIDDEIRNEAHQLLKLVG-----MSAKAQQY-IGYLST--GEKQRVMIARALMGQPQVLILDEPAAGLD 193 (279)
T ss_dssp TTC---------CCHHHHHHHHHHHHHTT-----CGGGTTSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred hhhhhccccccCCcHHHHHHHHHHHHHcC-----ChhHhcCC-hhhCCH--HHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 1222222111 22222222 245554 777887777776
Q ss_pred ----HHHHHHHHHHHHhcCCEE--EEEeccccccccccCCceeecccce
Q 013567 256 ----SQALRKMSGNASKAGCTL--IFLNQIRYKIGVYYGNPEVTSGGIA 298 (440)
Q Consensus 256 ----~~~l~~L~~lak~~~~tV--I~inhl~~~ig~~~~~~~~~~gG~~ 298 (440)
..++..|..+.++ |.|| |+++|..+.+...++.......|+.
T Consensus 194 ~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i 241 (279)
T 2ihy_A 194 FIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQS 241 (279)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 2333444444444 8999 9999998766554444334444443
No 55
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.19 E-value=1.7e-11 Score=119.08 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=87.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALEIA-- 213 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~~i-- 213 (440)
-+++|++++|.|||||||||| ++++.++.++..|.+++++..... ..+.+.+|+.+++..++. .++.+.+...
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~ 118 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTV-AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLT 118 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcc
Confidence 478999999999999999999 999999999999999999865322 124567888888765554 3554443221
Q ss_pred --------HHHHhcCCcc-e---E--EEecccccCCchhhcccchhhhHHHHHHHH--------------------H-HH
Q 013567 214 --------DRMCRSGAID-L---I--CVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------S-QA 258 (440)
Q Consensus 214 --------~~l~~~~~~~-l---v--VIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~-~~ 258 (440)
........+. + + -++....-. ..++++ |++|+...+|++ . .+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-~~~LSg--Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 119 RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET-GNQLSG--GQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-GTTSCH--HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-cCCCCH--HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 0000000000 0 0 011111111 234554 888888888887 2 23
Q ss_pred HHHHHHHHHhcCCEEEEEecccccc
Q 013567 259 LRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 259 l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
+..|..+.++.+.|||+++|..+.+
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~~~ 220 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLSLA 220 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHHHH
T ss_pred HHHHHHHHhhcCCEEEEEeCCHHHH
Confidence 3333333344589999999997654
No 56
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.19 E-value=1.1e-11 Score=118.27 Aligned_cols=141 Identities=17% Similarity=0.201 Sum_probs=88.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHHHH--
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMALEI-- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l~~-- 212 (440)
-+++|++++|.|||||||||| +++++++.++..|.+++++...... .+ .+.+|+.+++..++...++.+.+..
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTT-LSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence 478999999999999999999 9999999999999999998754321 12 3348888877655544455443322
Q ss_pred ------------HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHH
Q 013567 213 ------------ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQAL 259 (440)
Q Consensus 213 ------------i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l 259 (440)
+++++...+ -++....-. ..++++ |++|+...+|++ ..++
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~----~l~~~~~~~-~~~LSg--Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 179 (240)
T 1ji0_A 107 YNRKDKEGIKRDLEWIFSLFP----RLKERLKQL-GGTLSG--GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179 (240)
T ss_dssp TTCCCSSHHHHHHHHHHHHCH----HHHTTTTSB-SSSSCH--HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcc----cHhhHhcCC-hhhCCH--HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 111111000 012221111 134444 777777777776 2333
Q ss_pred HHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 260 RKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 260 ~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
..|..+ ++.|.|||+++|..+.+...++
T Consensus 180 ~~l~~~-~~~g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 180 EVIQKI-NQEGTTILLVEQNALGALKVAH 207 (240)
T ss_dssp HHHHHH-HHTTCCEEEEESCHHHHHHHCS
T ss_pred HHHHHH-HHCCCEEEEEecCHHHHHHhCC
Confidence 334444 3468999999999765543333
No 57
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.17 E-value=1.2e-11 Score=116.05 Aligned_cols=138 Identities=18% Similarity=0.157 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
-+++|++++|.|||||||||| ++++.++.++..|.+++++.... .+.+.+++.+++..++...++.+.+........
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 107 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTL-LKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG 107 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999 99999999999999999886543 345678888887766655566665543221100
Q ss_pred -cCC-------cceEEEecccccCCchhhcccchhhhHHHHHHHH--------------------HH-HHHHHHHHHHhc
Q 013567 219 -SGA-------IDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------------SQ-ALRKMSGNASKA 269 (440)
Q Consensus 219 -~~~-------~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------------~~-~l~~L~~lak~~ 269 (440)
... .+.+-++.. ... ..++++ |++|+...++++ .. ++..|..+ ++.
T Consensus 108 ~~~~~~~~~~~l~~~gl~~~-~~~-~~~LSg--Gqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~-~~~ 182 (214)
T 1sgw_A 108 VKVNKNEIMDALESVEVLDL-KKK-LGELSQ--GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI-LKE 182 (214)
T ss_dssp CCCCHHHHHHHHHHTTCCCT-TSB-GGGSCH--HHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHH-HHH
T ss_pred CchHHHHHHHHHHHcCCCcC-CCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH-HhC
Confidence 000 001112222 111 244554 788888888776 23 33334444 344
Q ss_pred CCEEEEEeccccccc
Q 013567 270 GCTLIFLNQIRYKIG 284 (440)
Q Consensus 270 ~~tVI~inhl~~~ig 284 (440)
+.|||+++|..+.+.
T Consensus 183 g~tiiivtHd~~~~~ 197 (214)
T 1sgw_A 183 KGIVIISSREELSYC 197 (214)
T ss_dssp HSEEEEEESSCCTTS
T ss_pred CCEEEEEeCCHHHHH
Confidence 899999999987554
No 58
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.15 E-value=1.8e-10 Score=110.44 Aligned_cols=142 Identities=18% Similarity=0.212 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHH--hhcCCcEEEEcCCCCCCh---hh-hhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEV--QKLGGNAMLVDAEHAFDP---SY-SKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~--~~~~~~vv~id~E~~~~~---~~-a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.|||||||||| ++++.++ .++..|.+++++...... .+ ...+++.+++..++...++.+.+..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTL-lk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTL-GKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL 103 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHH-HHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence 478999999999999999999 9999998 678889999998754322 12 2236777777666655566655433
Q ss_pred HHHHHhcC-------------CcceEEEe-cccccCCchh-hcccchhhhHHHHHHHH--------------------HH
Q 013567 213 ADRMCRSG-------------AIDLICVD-SVSALTPRAE-IEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 213 i~~l~~~~-------------~~~lvVID-sl~~l~~~~e-l~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
........ -.+.+-++ .+....+ .+ +++ |++|+...+|++ ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~LSg--GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~ 180 (250)
T 2d2e_A 104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-NEGFSG--GEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180 (250)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-TCC------HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred HHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-ccCCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 21100000 00111121 2222221 33 665 888998888887 22
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
.+..+....++.+.|||+++|..+.+.
T Consensus 181 ~l~~~l~~l~~~g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 181 VVARGVNAMRGPNFGALVITHYQRILN 207 (250)
T ss_dssp HHHHHHHHHCSTTCEEEEECSSSGGGG
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 333333333345899999999976554
No 59
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.14 E-value=8.9e-11 Score=112.37 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=53.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--h-hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--P-SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~-~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|||||||||| ++++.++.++..|.+++++..... . .+.+.+|+.+++..++. .++.+
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 101 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIID 101 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHH-HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHH
Confidence 478999999999999999999 999999999999999999875432 1 24566888887655543 24443
No 60
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.12 E-value=1.3e-10 Score=111.41 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=50.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNG 206 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ 206 (440)
-+++|++++|.|||||||||| ++++.++.++. |.+++++..... ..+.+.+|+.+++..++...++
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTL-lk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTL-LARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHH-HHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 478999999999999999999 99999999998 999998864321 1245567887776544433333
No 61
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.11 E-value=1.7e-10 Score=110.83 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=33.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEE
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAML 176 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~ 176 (440)
-+++|++++|.|||||||||| +++++++.++..|.++
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTL-LDLLLGIHRPIQGKIE 63 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHH-HHHHTTSSCCSEEEEE
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEE
Confidence 478999999999999999999 9999999988888776
No 62
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.10 E-value=2.5e-10 Score=110.49 Aligned_cols=138 Identities=12% Similarity=0.210 Sum_probs=86.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCC--h-hh-hhhhcccccceeecCCCCHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFD--P-SY-SKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~--~-~~-a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
-+++|++++|.|||||||||| +++++++. .+..|.+++++..... . .+ ...+++.+++..++...++.+.+..
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTL-lk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~ 120 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTL-SATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 120 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHH-HHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHH
Confidence 478999999999999999999 99999984 5778999998865322 1 12 2346777777665555555444332
Q ss_pred H----------------------HHHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH--------------
Q 013567 213 A----------------------DRMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-------------- 255 (440)
Q Consensus 213 i----------------------~~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-------------- 255 (440)
. .+++.. +-++ .+....+...+++ |++|+...+|++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~gl~~~~~~~~~~~~LSg--Gq~QRv~iAraL~~~p~lLlLDEPts 193 (267)
T 2zu0_C 121 ALNAVRSYRGQETLDRFDFQDLMEEKIAL-----LKMPEDLLTRSVNVGFSG--GEKKRNDILQMAVLEPELCILDESDS 193 (267)
T ss_dssp HHHHHHHGGGCCCCCHHHHHHHHHHHHHH-----TTCCTTTTTSBTTTTCCH--HHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred HHHhhhhhhccccCCHHHHHHHHHHHHHH-----cCCChhHhcCCcccCCCH--HHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 1 111111 1121 1211111113665 889999989887
Q ss_pred ------HHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 256 ------SQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 256 ------~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
...+..+....++.+.|||+++|..+.+.
T Consensus 194 ~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~ 228 (267)
T 2zu0_C 194 GLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILD 228 (267)
T ss_dssp TCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHH
Confidence 22333333333345899999999976553
No 63
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.05 E-value=1.1e-10 Score=115.10 Aligned_cols=62 Identities=18% Similarity=0.390 Sum_probs=52.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
-+++|++++|+|||||||||| ++++.++..+..|.+++++...... .+.+.+|+.+++..++
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTL-l~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf 140 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTI-LRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHH-HHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCC
T ss_pred EEcCCCEEEEECCCCchHHHH-HHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccC
Confidence 478999999999999999999 9999999999999999998765433 2566789888876554
No 64
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.02 E-value=4.7e-10 Score=108.11 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|.|||||||||| ++++.++..+ .|.+++++..... ..+.+.+++.+++..++. .++.+
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 111 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTI-AKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKY 111 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHH
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHH
Confidence 478999999999999999999 9999999876 7999998865321 124556888887665543 24443
No 65
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.00 E-value=1.6e-09 Score=104.55 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=92.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhc-ccccceeecCCCCHHHHHHHHH---
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALG-VDVENLIVCQPDNGEMALEIAD--- 214 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lG-v~~~~l~i~~~~~~ee~l~~i~--- 214 (440)
-++ |++++|.|||||||||| +++++++. +..|.+++++.........+.++ +.+++..+ ..++.+.+....
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTL-lk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~ 101 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTL-LRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK 101 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHH-HHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT
T ss_pred EEC-CEEEEEECCCCCCHHHH-HHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc
Confidence 478 99999999999999999 99999999 99999999875432111134677 77776554 455555443321
Q ss_pred --------HHHhcCCcceEEEe-cccccCCchhhcccchhhhHHHHHHHH-----------------HHHHHHHHHHHHh
Q 013567 215 --------RMCRSGAIDLICVD-SVSALTPRAEIEGEIGMQQIGLQARLM-----------------SQALRKMSGNASK 268 (440)
Q Consensus 215 --------~l~~~~~~~lvVID-sl~~l~~~~el~~~~g~~q~~~~ar~l-----------------~~~l~~L~~lak~ 268 (440)
++++.. -++ ...... ..++++ |++|+...+|++ ......+..++++
T Consensus 102 ~~~~~~~~~~l~~~-----gl~~~~~~~~-~~~LSg--GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~ 173 (263)
T 2pjz_A 102 GLDRDLFLEMLKAL-----KLGEEILRRK-LYKLSA--GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE 173 (263)
T ss_dssp CCCHHHHHHHHHHT-----TCCGGGGGSB-GGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHc-----CCChhHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 122211 122 222222 245555 888888888887 2233334444444
Q ss_pred cCCEEEEEeccccccccccC-Cceeeccccee
Q 013567 269 AGCTLIFLNQIRYKIGVYYG-NPEVTSGGIAL 299 (440)
Q Consensus 269 ~~~tVI~inhl~~~ig~~~~-~~~~~~gG~~l 299 (440)
...|||+++|..+.+...++ .......|+..
T Consensus 174 ~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~ 205 (263)
T 2pjz_A 174 YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ 205 (263)
T ss_dssp SCSEEEEEESCGGGGGGCTTSEEEEEETTEEE
T ss_pred hcCcEEEEEcCHHHHHHhcCceEEEEECCEEE
Confidence 33399999999876655554 44444455443
No 66
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.00 E-value=3.7e-10 Score=115.00 Aligned_cols=150 Identities=21% Similarity=0.211 Sum_probs=94.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHHHH----
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMALE---- 211 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~l~---- 211 (440)
-+++|+++.|.|||||||||| +++++++.. ..|.+++++...... .+.+.+|+.+++..+++ .++.+.+.
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~ 119 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTL-LSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAA 119 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHH-HHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCC
T ss_pred EEcCCCEEEEECCCCChHHHH-HHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhccc
Confidence 478999999999999999999 999999987 789999998865432 24577899888776553 34433321
Q ss_pred ----HHHHHHhcCCcceEEEecccccCCc----------hhhcccchhhhHHHHHHHH--------------------HH
Q 013567 212 ----IADRMCRSGAIDLICVDSVSALTPR----------AEIEGEIGMQQIGLQARLM--------------------SQ 257 (440)
Q Consensus 212 ----~i~~l~~~~~~~lvVIDsl~~l~~~----------~el~~~~g~~q~~~~ar~l--------------------~~ 257 (440)
.+.+++..-+ ++.+....|. ..+++ |++|+...+|++ ..
T Consensus 120 ~~~~~v~~~l~~~~-----L~~~~~~~p~~l~~~i~~~g~~LSG--GqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~ 192 (390)
T 3gd7_A 120 HSDQEIWKVADEVG-----LRSVIEQFPGKLDFVLVDGGCVLSH--GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192 (390)
T ss_dssp SCHHHHHHHHHHTT-----CHHHHTTSTTGGGCEECTTTTTSCH--HHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHH
T ss_pred cCHHHHHHHHHHhC-----CHHHHhhcccccccccccccccCCH--HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 1222222111 2222222221 11555 888888888887 22
Q ss_pred HHHHHHHHHHhcCCEEEEEeccccccccccCCceeecccceee
Q 013567 258 ALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALK 300 (440)
Q Consensus 258 ~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~ 300 (440)
.++.+.... ..++|||+++|..+.+. +++....+..|+...
T Consensus 193 ~l~~~l~~~-~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~ 233 (390)
T 3gd7_A 193 IIRRTLKQA-FADCTVILCEARIEAML-ECDQFLVIEENKVRQ 233 (390)
T ss_dssp HHHHHHHTT-TTTSCEEEECSSSGGGT-TCSEEEEEETTEEEE
T ss_pred HHHHHHHHH-hCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEE
Confidence 333322222 24799999999976443 344444555665543
No 67
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.00 E-value=1.4e-10 Score=110.59 Aligned_cols=61 Identities=13% Similarity=0.314 Sum_probs=48.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i 200 (440)
-+++|++++|.|||||||||| ++++.++.++..|.+++++..... ..+.+.+++.+++..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 87 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTI-FSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI 87 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHH-HHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCC
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcc
Confidence 478999999999999999999 999999999999999998865322 1245567877765443
No 68
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.91 E-value=8e-09 Score=97.35 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
.+|.++.++|++|+||||++++++.++...+..++++..+.... ...+.++|+....+.+. ..+++++.+.....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~---~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVE---SAPEILNYIMSNSF 86 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEES---STHHHHHHHHSTTS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccC---CHHHHHHHHHHHhh
Confidence 46889999999999999999999999998888999996543211 12456677666555442 33556666555444
Q ss_pred cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
...+++|+||+++.+.. . +-+.+ ..++. .+++||++.+..+-.+..|+
T Consensus 87 ~~~~dvViIDEaQ~l~~-~-----------------~ve~l---~~L~~-~gi~Vil~Gl~~df~~~~F~ 134 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDD-R-----------------ICEVA---NILAE-NGFVVIISGLDKNFKGEPFG 134 (223)
T ss_dssp CTTCCEEEECSGGGSCT-H-----------------HHHHH---HHHHH-TTCEEEEECCSBCTTSSBCT
T ss_pred CCCCCEEEEecCccCcH-H-----------------HHHHH---HHHHh-CCCeEEEEeccccccCCcCC
Confidence 56789999999987542 0 11222 22333 48999999998875554443
No 69
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.89 E-value=3.7e-09 Score=113.08 Aligned_cols=63 Identities=21% Similarity=0.376 Sum_probs=52.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~ 202 (440)
-+++|++++|+|||||||||| ++++.+...+..|.+++++.+..+. .+.+.+++.+++..+++
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTL-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 430 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTI-ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHH-HHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC
Confidence 478999999999999999999 9999999999999999998764332 24567888887765543
No 70
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.88 E-value=1.9e-09 Score=115.56 Aligned_cols=62 Identities=19% Similarity=0.380 Sum_probs=51.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
-+++|++++|+|||||||||| ++++.+...+..|.+++++.+..+. .+.+.+++.+++..++
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTL-l~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~ 430 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTV-LSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF 430 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHH-HHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCC
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCccc
Confidence 478999999999999999999 9999999999999999998765432 2456788888776554
No 71
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.88 E-value=4.7e-09 Score=112.25 Aligned_cols=62 Identities=18% Similarity=0.407 Sum_probs=51.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~ 201 (440)
-+++|++++|+|||||||||| ++++.+...+..|.+++++.+..+ ..+.+.+|+.+++..++
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 429 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTI-ANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429 (582)
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccc
Confidence 479999999999999999999 999999999999999999875432 12456788888766554
No 72
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.86 E-value=3e-09 Score=100.48 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=37.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-+++|++++|.|||||||||| ++++.++.++..|.+++++
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSL-LMMIMGELEPSEGKIKHSG 69 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHH-HHHHTTSSCCSEEEEEECS
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCcCCccEEEECC
Confidence 478999999999999999999 9999999999999998876
No 73
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.82 E-value=2.8e-09 Score=114.19 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=52.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
-+++|++++|+||+||||||| ++++.+...+..|.+++++.+..+. .+.+++++.+++..++
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTl-l~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 429 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTL-MNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHH-HHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCC
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCc
Confidence 478999999999999999999 9999999999999999998865432 2566788888776554
No 74
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.82 E-value=4e-09 Score=113.13 Aligned_cols=68 Identities=22% Similarity=0.377 Sum_probs=54.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
-+++|++++|+||+||||||| ++++.+...+..|.+++++.+..+. .+.+.+++.+++..+++ .++.+
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e 447 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTI-VNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKE 447 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHH-HHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHH
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHH
Confidence 389999999999999999999 9999999999999999998754322 25667888888766553 24433
No 75
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.81 E-value=4.1e-09 Score=112.65 Aligned_cols=63 Identities=24% Similarity=0.404 Sum_probs=52.0
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQ 202 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~ 202 (440)
-+++|++++|+|||||||||| ++++.+...+..|.+++++.+..+. .+.+.+|+.+++..+++
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTl-l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 428 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTL-INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 428 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS
T ss_pred EECCCCEEEEECCCCChHHHH-HHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCc
Confidence 479999999999999999999 9999999999999999998754322 25667888887765543
No 76
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.81 E-value=9.4e-09 Score=97.60 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=36.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-+++|++++|.|||||||||| ++++.++.++..|.+++++
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g 66 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSL-LSALLAEMDKVEGHVAIKG 66 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHH-HHHHTTCSEEEEEEEEECS
T ss_pred EECCCCEEEEECCCCCCHHHH-HHHHhcCCCCCCceEEECC
Confidence 478999999999999999999 9999999998888888876
No 77
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.79 E-value=6.2e-09 Score=110.26 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=34.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
+++|++++|+|||||||||| ++++.++.++..|.++++.
T Consensus 291 i~~Gei~~i~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~~ 329 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTF-ARILVGEITADEGSVTPEK 329 (538)
T ss_dssp EETTCEEEEECCTTSSHHHH-HHHHTTSSCCSBCCEESSC
T ss_pred ECCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCcEEEECC
Confidence 57999999999999999999 9999999988888776543
No 78
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.78 E-value=2.5e-09 Score=114.88 Aligned_cols=132 Identities=16% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHH-HHHHh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIA-DRMCR 218 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i-~~l~~ 218 (440)
+++|++++|.|||||||||| ++++.++.++..|.+++. ..+++.+++.......++.+.+... .....
T Consensus 379 v~~Gei~~i~G~NGsGKSTL-lk~l~Gl~~p~~G~I~~~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~ 447 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTF-VKMLAGVEEPTEGKVEWD----------LTVAYKPQYIKAEYEGTVYELLSKIDSSKLN 447 (607)
T ss_dssp EETTCEEEEECCTTSSHHHH-HHHHHTSSCCSBSCCCCC----------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHhcCCCCCceEEEEe----------eEEEEEecCccCCCCCcHHHHHHhhhccCCC
Confidence 47899999999999999999 999999988877666541 2355555554333333444433221 00000
Q ss_pred -----cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhcCCE
Q 013567 219 -----SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKAGCT 272 (440)
Q Consensus 219 -----~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~~~t 272 (440)
..-.+.+-++...... ..++++ |++|+...++++ ..++..|..++++.+.|
T Consensus 448 ~~~~~~~~l~~~~l~~~~~~~-~~~LSG--Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 524 (607)
T 3bk7_A 448 SNFYKTELLKPLGIIDLYDRN-VEDLSG--GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524 (607)
T ss_dssp CHHHHHHTHHHHTCTTTTTSB-GGGCCH--HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCchHhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0001111122222111 234444 666666666665 23444455555677999
Q ss_pred EEEEecccccccc
Q 013567 273 LIFLNQIRYKIGV 285 (440)
Q Consensus 273 VI~inhl~~~ig~ 285 (440)
||+++|..+.+..
T Consensus 525 vi~vsHd~~~~~~ 537 (607)
T 3bk7_A 525 ALVVEHDVLMIDY 537 (607)
T ss_dssp EEEECSCHHHHHH
T ss_pred EEEEeCCHHHHHH
Confidence 9999999876543
No 79
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.77 E-value=3.3e-09 Score=112.46 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHH-HHHHh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIA-DRMCR 218 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i-~~l~~ 218 (440)
+++|++++|+|||||||||| ++++.++.++..|.+++. ..+|+.+++.......++.+.+... .....
T Consensus 309 i~~Ge~~~i~G~NGsGKSTL-lk~l~Gl~~p~~G~i~~~----------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~ 377 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTF-VKMLAGVEEPTEGKIEWD----------LTVAYKPQYIKADYEGTVYELLSKIDASKLN 377 (538)
T ss_dssp EETTCEEEEECCTTSSHHHH-HHHHHTSSCCSBCCCCCC----------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEEC----------ceEEEEecCCcCCCCCcHHHHHHhhhccCCC
Confidence 46899999999999999999 999999988776665531 2345555544332233444433221 00000
Q ss_pred -----cCCcceEEEecccccCCchhhcccchhhhHHHHHHHH---------------------HHHHHHHHHHHHhcCCE
Q 013567 219 -----SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM---------------------SQALRKMSGNASKAGCT 272 (440)
Q Consensus 219 -----~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l---------------------~~~l~~L~~lak~~~~t 272 (440)
..-.+.+-+.....-. ..++++ |++|+...++++ ..++..|..++++.+.|
T Consensus 378 ~~~~~~~~l~~~~l~~~~~~~-~~~LSG--Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t 454 (538)
T 1yqt_A 378 SNFYKTELLKPLGIIDLYDRE-VNELSG--GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 454 (538)
T ss_dssp CHHHHHHTTTTTTCGGGTTSB-GGGCCH--HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCChhhhcCC-hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0001111111111111 234444 666666666665 23444455555677999
Q ss_pred EEEEecccccccccc
Q 013567 273 LIFLNQIRYKIGVYY 287 (440)
Q Consensus 273 VI~inhl~~~ig~~~ 287 (440)
||+++|..+.+..++
T Consensus 455 vi~vsHd~~~~~~~~ 469 (538)
T 1yqt_A 455 ALVVEHDVLMIDYVS 469 (538)
T ss_dssp EEEECSCHHHHHHHC
T ss_pred EEEEeCCHHHHHHhC
Confidence 999999987665433
No 80
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.72 E-value=8.6e-09 Score=100.88 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=36.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-+++|++++|.|||||||||| ++++.++.++..|.+++++
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTL-lk~l~Gl~~p~~G~I~~~g 99 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSL-LMMIMGELEPSEGKIKHSG 99 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHH-HHHHTTSSCEEEEEEECCS
T ss_pred EEcCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCcEEEECC
Confidence 478999999999999999999 9999999988888888875
No 81
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.65 E-value=9.2e-08 Score=94.17 Aligned_cols=133 Identities=19% Similarity=0.227 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhh--hhcccccceeecCCCCHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSK--ALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~--~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
+|+++.|+||+||||||+ +..+++..++.++.+++.+.+..... +.+ .+++.+++....+..+..+.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTl-l~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT-IAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHH-HHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHH-HHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999 88888888887777777777654321 222 23443333211111112222222
Q ss_pred HHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH----------------HHHHHHHHHHHHhcCCEEEEE
Q 013567 213 ADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM----------------SQALRKMSGNASKAGCTLIFL 276 (440)
Q Consensus 213 i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l----------------~~~l~~L~~lak~~~~tVI~i 276 (440)
.. ..+.+.+++|..........+-.+. .+++...+|++ ...+..+..+.++.++|+|++
T Consensus 180 ~~----~~~~d~~llDt~G~~~~~~~~~~eL-s~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iiv 254 (304)
T 1rj9_A 180 MK----ARGYDLLFVDTAGRLHTKHNLMEEL-KKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIV 254 (304)
T ss_dssp HH----HHTCSEEEECCCCCCTTCHHHHHHH-HHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEE
T ss_pred HH----hCCCCEEEecCCCCCCchHHHHHHH-HHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 11 1246778888765433211111111 12333333332 234555666666779999999
Q ss_pred eccc
Q 013567 277 NQIR 280 (440)
Q Consensus 277 nhl~ 280 (440)
||+.
T Consensus 255 Th~d 258 (304)
T 1rj9_A 255 TKLD 258 (304)
T ss_dssp ECTT
T ss_pred ECCc
Confidence 9984
No 82
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.63 E-value=3.4e-08 Score=114.57 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=51.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeec
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVC 201 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~ 201 (440)
-+++|++++|+||+||||||| ++++.++..+..|.+++++.+.... .+.+.+++.+++..++
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl-~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~ 1119 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTV-VQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHH-HHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccc
Confidence 378999999999999999999 9999999999999999999865432 2456688887765443
No 83
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.61 E-value=2.1e-08 Score=107.63 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=31.1
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN 173 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~ 173 (440)
|-+++|++++|+|||||||||| ++++.++.++..|
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTL-lk~l~Gl~~p~~G 407 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTL-IKLLAGALKPDEG 407 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHH-HHHHHTSSCCSBC
T ss_pred CccccceEEEEECCCCCcHHHH-HHHHhcCCCCCCC
Confidence 5578889999999999999999 9999999887654
No 84
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.57 E-value=4.9e-08 Score=113.20 Aligned_cols=157 Identities=14% Similarity=0.174 Sum_probs=93.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceeecCCCCHHHHHHH---
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIVCQPDNGEMALEI--- 212 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i~~~~~~ee~l~~--- 212 (440)
-+++|++++|+||+||||||| ++++.+...+..|.+++++.+..+. .+.+.+|+.+++..++.. ++.+.+..
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl-~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~ 489 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTT-VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE 489 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHH-HHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC
Confidence 478999999999999999999 9999999999999999998754322 255678988887766543 44332211
Q ss_pred ------HHHHHhcCCcceEEEecc----cccCC--chhhcccchhhhHHHHHHHH--------------------HHHHH
Q 013567 213 ------ADRMCRSGAIDLICVDSV----SALTP--RAEIEGEIGMQQIGLQARLM--------------------SQALR 260 (440)
Q Consensus 213 ------i~~l~~~~~~~lvVIDsl----~~l~~--~~el~~~~g~~q~~~~ar~l--------------------~~~l~ 260 (440)
+.+.++.....-. ++.+ ..... ...+++ |++|+...||++ ...+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~-i~~l~~g~~t~~~~~g~~LSg--Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~ 566 (1284)
T 3g5u_A 490 DVTMDEIEKAVKEANAYDF-IMKLPHQFDTLVGERGAQLSG--GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ 566 (1284)
T ss_dssp SCCHHHHHHHHHHTTCHHH-HHHSTTGGGCCCSSSSCSSCH--HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcHHH-HHhccccccccccCCCCccCH--HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 1111111111000 0000 00110 123343 777777777776 12222
Q ss_pred HHHHHHHhcCCEEEEEeccccccccccCCceeecccceeeee
Q 013567 261 KMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFF 302 (440)
Q Consensus 261 ~L~~lak~~~~tVI~inhl~~~ig~~~~~~~~~~gG~~l~~~ 302 (440)
...... ..++|+|+|+|....+.. ++.......|+.....
T Consensus 567 ~~l~~~-~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 567 AALDKA-REGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp HHHHHH-HTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEE
T ss_pred HHHHHH-cCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 222222 248999999998776643 4444455666665443
No 85
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.50 E-value=1.3e-07 Score=109.99 Aligned_cols=61 Identities=13% Similarity=0.305 Sum_probs=52.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i 200 (440)
-|++|+.++|+||+||||||| ++++.++..+..|.++||+.+..+- .+++++++.+|+..+
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL-~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L 1164 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTV-VALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL 1164 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSH-HHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC
T ss_pred EECCCCEEEEECCCCChHHHH-HHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe
Confidence 489999999999999999999 9999999999999999999876543 367788888876543
No 86
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.50 E-value=5.8e-08 Score=102.87 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcE
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNA 174 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~v 174 (440)
-+++|++++|+|||||||||| ++++++...++.|.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTL-lk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTA-VKILAGQLIPNLCG 77 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHH-HHHHHTSSCCCTTT
T ss_pred cCCCCCEEEEECCCCCCHHHH-HHHHhCCCCCCCCc
Confidence 478999999999999999999 99999998876654
No 87
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.47 E-value=6.4e-08 Score=103.92 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcE
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNA 174 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~v 174 (440)
-+++|++++|.|||||||||| ++++++...+..|.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTL-lkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTA-VKILAGQLIPNLCE 147 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHH-HHHHTTSSCCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHH-HHHHhCCCCCCCCc
Confidence 478999999999999999999 99999998876655
No 88
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.47 E-value=2.7e-07 Score=90.67 Aligned_cols=44 Identities=32% Similarity=0.426 Sum_probs=37.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD 184 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~ 184 (440)
+++|+++.|+||||+||||+ +..+++..++.++.+++.+.+...
T Consensus 97 ~~~g~vi~lvG~nGsGKTTl-l~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTS-LGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHH-HHHHHHHHHHTTCCEEEECCCCSC
T ss_pred cCCCcEEEEEcCCCCCHHHH-HHHHHHHHHHcCCeEEEEeecccc
Confidence 56899999999999999999 788888887777777777776654
No 89
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.44 E-value=5.2e-07 Score=90.79 Aligned_cols=44 Identities=32% Similarity=0.426 Sum_probs=36.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD 184 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~ 184 (440)
+++|+++.|+|||||||||+ +..+++..++.++.+++.+.+...
T Consensus 154 ~~~g~vi~lvG~nGsGKTTl-l~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTS-LGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHH-HHHHHHHHHHTTCCEEEECCCCSC
T ss_pred cCCCeEEEEEcCCCChHHHH-HHHHHhhccccCCEEEEecccccc
Confidence 56899999999999999999 778888887777777777776654
No 90
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.43 E-value=6.4e-07 Score=89.08 Aligned_cols=130 Identities=19% Similarity=0.243 Sum_probs=73.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccc--cceeecCCCCHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDV--ENLIVCQPDNGEMALE 211 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~--~~l~i~~~~~~ee~l~ 211 (440)
++|+++.|+||||+||||+ +..+++..++.++.+++.+.+..... +++++|+.. +.....+..++.+.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTl-l~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTT-IAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp CSSEEEEEECCTTSSHHHH-HHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHH-HHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 5799999999999999999 77777887777777777666554321 345566432 2111111111222222
Q ss_pred HHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHH--------------HHHHHHHHHHHHhcCCEEEEEe
Q 013567 212 IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLM--------------SQALRKMSGNASKAGCTLIFLN 277 (440)
Q Consensus 212 ~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l--------------~~~l~~L~~lak~~~~tVI~in 277 (440)
... ....+++++|..........+-. .....++.+ .+.+..+..+.++.++++|++|
T Consensus 206 ~~~----~~~~d~vliDtaG~~~~~~~l~~-----eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 206 HAK----ARGIDVVLIDTAGRSETNRNLMD-----EMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILT 276 (328)
T ss_dssp HHH----HHTCSEEEEEECCSCCTTTCHHH-----HHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHH----hccchhhHHhhccchhHHHHHHH-----HHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 211 23567888887655431111110 111112221 2344555566667899999999
Q ss_pred ccc
Q 013567 278 QIR 280 (440)
Q Consensus 278 hl~ 280 (440)
|+-
T Consensus 277 KlD 279 (328)
T 3e70_C 277 KLD 279 (328)
T ss_dssp CGG
T ss_pred CcC
Confidence 974
No 91
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.41 E-value=9.2e-07 Score=92.18 Aligned_cols=90 Identities=16% Similarity=0.253 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hh--hhhhcccccceeecCCCCHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SY--SKALGVDVENLIVCQPDNGEMAL 210 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~--a~~lGv~~~~l~i~~~~~~ee~l 210 (440)
+++|+++.|+|+|||||||| +..+++..++.++.+++.+.+.... .+ .+.+++.+++.... ....+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTL-l~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~---p~~tV~ 365 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTT-IGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD---SASVIF 365 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHH-HHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC---HHHHHH
T ss_pred ccCCeEEEEECCCcccHHHH-HHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC---HHHHHH
Confidence 57899999999999999999 7788888877777777765555442 12 22344444332111 111222
Q ss_pred HHHHHHHhcCCcceEEEecccccC
Q 013567 211 EIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 211 ~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
+.+... ...+.++++||....+.
T Consensus 366 e~l~~a-~~~~~DvVLIDTaGrl~ 388 (503)
T 2yhs_A 366 DAIQAA-KARNIDVLIADTAGRLQ 388 (503)
T ss_dssp HHHHHH-HHTTCSEEEECCCCSCC
T ss_pred HHHHHH-HhcCCCEEEEeCCCccc
Confidence 222222 22467899999887664
No 92
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.41 E-value=2.9e-07 Score=107.07 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=51.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh---hhhhhhcccccceee
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP---SYSKALGVDVENLIV 200 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~---~~a~~lGv~~~~l~i 200 (440)
-+++|+.++|+||+||||||| ++++.+...+..|.+++|+.+..+. .+.+++++.+++.++
T Consensus 440 ~i~~G~~vaivG~sGsGKSTl-l~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~L 503 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTI-ISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPAL 503 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHH-HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC
T ss_pred eecCCcEEEEEecCCCcHHHH-HHHhccccccccCcccCCCccchhccHHHHhhcccccCCccee
Confidence 489999999999999999999 9999999999999999998765443 256678888766544
No 93
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.40 E-value=4e-08 Score=88.16 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALH 162 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~ 162 (440)
+++|++++|+|||||||||| ++
T Consensus 6 i~~gei~~l~G~nGsGKSTl-~~ 27 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTF-AK 27 (171)
T ss_dssp EESSEEEEEECCTTSCHHHH-HH
T ss_pred CCCCEEEEEECCCCCCHHHH-HH
Confidence 57899999999999999999 55
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.38 E-value=5.9e-07 Score=80.57 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=60.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
.+++|+.+.|+||||+|||||+..++..+. ..+..++|++..+..... ...+.- . .....+ ..+
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~---------~-~~~~~~---~~~- 98 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL-KHLMDE---------G-KDTKFL---KTV- 98 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH-HHHHHH---------T-CCSHHH---HHH-
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH-HHHhcC---------c-hHHHHH---HHh-
Confidence 345689999999999999999554444443 345567776643221111 010000 0 001122 222
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
..++++++|.+..... .. . ....+..+.....+.+.++|+++|...
T Consensus 99 --~~~~llilDE~~~~~~-~~-----------~----~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 --LNSPVLVLDDLGSERL-SD-----------W----QRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp --HTCSEEEEETCSSSCC-CH-----------H----HHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred --cCCCEEEEeCCCCCcC-CH-----------H----HHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 2578999999874321 00 0 122334444444557899999998753
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.38 E-value=2.2e-06 Score=75.26 Aligned_cols=88 Identities=23% Similarity=0.297 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG 220 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~ 220 (440)
+|+.+.|+||+|+||||| ++++.+...+ +..++|++....... .++ .
T Consensus 35 ~g~~~~l~G~~G~GKTtL-~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------------------~~~--~ 82 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL-LQAWVAQALEAGKNAAYIDAASMPLT-----------------------------DAA--F 82 (149)
T ss_dssp CCSEEEEESSSTTTTCHH-HHHHHHHHHTTTCCEEEEETTTSCCC-----------------------------GGG--G
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHHhcCCcEEEEcHHHhhHH-----------------------------HHH--h
Confidence 899999999999999999 6666666544 334899987654322 011 2
Q ss_pred CcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEecc
Q 013567 221 AIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCT-LIFLNQI 279 (440)
Q Consensus 221 ~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~t-VI~inhl 279 (440)
.+++++||.+..+.+ . . .+.+..+.+...+.+.+ +|+++|.
T Consensus 83 ~~~lLilDE~~~~~~-~-------------~----~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGN-E-------------E----QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCS-H-------------H----HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccCh-H-------------H----HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 478999999987543 0 0 12233344444556777 7778775
No 96
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.37 E-value=3.5e-07 Score=99.24 Aligned_cols=22 Identities=41% Similarity=0.800 Sum_probs=20.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLA 160 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLa 160 (440)
-+++|++++|+||||||||||+
T Consensus 40 ~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 40 EIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHh
Confidence 4789999999999999999993
No 97
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.36 E-value=4.1e-07 Score=96.29 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEE
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAM 175 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv 175 (440)
.++|++++|+|||||||||| ++++++..+++.|.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTL-lkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTV-LKILAGEIIPNFGDP 56 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHH-HHHHTTSSCCCTTCT
T ss_pred CCCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCCcc
Confidence 56899999999999999999 999999998877655
No 98
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3.8e-07 Score=97.86 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEE
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAM 175 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv 175 (440)
+++|++++|.||||+||||| +++++++.++..|.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTL-LkiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTA-LKILAGKQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHH-HHHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHH-HHHHhcCCCCCCceE
Confidence 67999999999999999999 999999998877654
No 99
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.30 E-value=1.5e-06 Score=79.00 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
+|.++.|+|++|+||||++++++..+...+.+++++....... .....+.|.....+.+. +.+++++.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~---~~~~~~~~~~---- 74 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIE---RPEEMRKYIE---- 74 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEES---SGGGGGGGCC----
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEEC---CHHHHHHHhc----
Confidence 4889999999999999999999999988888888875442111 11223344433333221 2222222111
Q ss_pred cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
.+.++|+||.++.+.+ . +...+ ..++.+ ++.||++....+
T Consensus 75 -~~~dvviIDE~Q~~~~-~-----------------~~~~l---~~l~~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 -EDTRGVFIDEVQFFNP-S-----------------LFEVV---KDLLDR-GIDVFCAGLDLT 114 (184)
T ss_dssp -TTEEEEEECCGGGSCT-T-----------------HHHHH---HHHHHT-TCEEEEEEESBC
T ss_pred -CCCCEEEEECcccCCH-H-----------------HHHHH---HHHHHC-CCCEEEEeeccc
Confidence 3578999999987642 0 11223 333334 899998887654
No 100
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.28 E-value=5e-06 Score=79.86 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEcCC
Q 013567 130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVDAE 180 (440)
Q Consensus 130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id~E 180 (440)
+.|+.+. +++|++++|+||+||||||| ++++.+...+. .+.++++..
T Consensus 15 ~vl~~i~---i~~g~~v~i~Gp~GsGKSTl-l~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 15 DKVLELC---HRKMGLILVTGPTGSGKSTT-IASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp THHHHGG---GCSSEEEEEECSTTCSHHHH-HHHHHHHHHHHCCCEEEEEES
T ss_pred HHHHHHh---hCCCCEEEEECCCCccHHHH-HHHHHHhCCCCCCCEEEEcCC
Confidence 4666654 89999999999999999999 89999988775 677777654
No 101
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.22 E-value=2.5e-06 Score=85.75 Aligned_cols=114 Identities=16% Similarity=0.069 Sum_probs=63.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
..+|.+++|+||+||||||| ++++.+...+. ++.+ +..|+..+.......++..+.-.-....+..+ .+...+.
T Consensus 120 ~~~~g~i~I~GptGSGKTTl-L~~l~g~~~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~---~La~aL~ 194 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTT-LAAMLDYLNNTKYHHI-LTIEDPIEFVHESKKCLVNQREVHRDTLGFSE---ALRSALR 194 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHH-HHHHHHHHHHHCCCEE-EEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---HHHHHTT
T ss_pred hCCCCEEEEECCCCCCHHHH-HHHHHhcccCCCCcEE-EEccCcHHhhhhccccceeeeeeccccCCHHH---HHHHHhh
Confidence 35777999999999999999 88888888764 3444 33343332221111111111111111123333 2223232
Q ss_pred cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
.+++++++|.+... + ..+.+ .. +.+.|.+||+++|..+..
T Consensus 195 -~~PdvillDEp~d~----e----------------~~~~~---~~-~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 -EDPDIILVGEMRDL----E----------------TIRLA---LT-AAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp -SCCSEEEESCCCSH----H----------------HHHHH---HH-HHHTTCEEEEEESCSSHH
T ss_pred -hCcCEEecCCCCCH----H----------------HHHHH---HH-HHhcCCEEEEEEccChHH
Confidence 57999999987520 0 11111 12 235699999999998754
No 102
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.20 E-value=1.9e-07 Score=86.89 Aligned_cols=55 Identities=25% Similarity=0.184 Sum_probs=37.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc-CCCCCChhhhhhhcccccc
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD-AEHAFDPSYSKALGVDVEN 197 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id-~E~~~~~~~a~~lGv~~~~ 197 (440)
+++|++++|.|||||||||| ++++.++ .+..|.+... .... ...+.+.+|+.+++
T Consensus 19 i~~Ge~~~liG~nGsGKSTL-l~~l~Gl-~p~~G~I~~~~~~~~-~~~~~~~ig~v~q~ 74 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYL-AMAKAVQ-ALQSKQVSRIILTRP-AVEAGEKLGFLPGT 74 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHH-HHHHHHH-HHHTTSCSEEEEEEC-SCCTTCCCCSSCC-
T ss_pred ccCCCEEEEECCCCCCHHHH-HHHHhcC-CCcCCeeeeEEecCC-chhhhcceEEecCC
Confidence 57999999999999999999 9999999 8766555321 1111 11234456766654
No 103
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=98.17 E-value=2.1e-05 Score=69.78 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=87.9
Q ss_pred cccccCcHHHHHHh-cCCCCCCCEEEEEc-CCCCcHHHHHHHHHHHHhh--cCCcEEEEcCCCCCChhhhhhhcccccce
Q 013567 123 ETFPSGCLTLDLAL-GGGLPKGRIVEIFG-PESSGKTTLALHAIAEVQK--LGGNAMLVDAEHAFDPSYSKALGVDVENL 198 (440)
Q Consensus 123 ~~i~TGi~~LD~~L-gGGi~~G~ii~I~G-~~GsGKTTLaL~li~~~~~--~~~~vv~id~E~~~~~~~a~~lGv~~~~l 198 (440)
..+|.|.+.+|.-+ +||++.|-+++|.. .+|.|-..|.+-++..+.. .++.++||..............|++++++
T Consensus 23 ~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rl 102 (161)
T 1oft_A 23 NGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERI 102 (161)
T ss_dssp --------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGGE
T ss_pred ccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHHE
Confidence 36799999999988 68999999999985 5788877776777776654 67889999988777777788999999999
Q ss_pred eecCCCCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Q 013567 199 IVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL 276 (440)
Q Consensus 199 ~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~i 276 (440)
.++++.+..+.++.+++.++.+.+..|+.. +..+. ...+|+|.-.++..+++.+++
T Consensus 103 l~v~~~~~~daLwa~EqALrsG~~~aVl~W-l~~l~---------------------~~~~RRLqlAAe~g~~~~fll 158 (161)
T 1oft_A 103 LLLQAKDNAAALALSCEALRLGRSHTVVSW-LEPLS---------------------RAARKQLSRAAQLGQAQSLNI 158 (161)
T ss_dssp EEECCSSTTHHHHHHHHHHHTTCEEEEEEC-CSSCC---------------------HHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCChHHHHHHHHHHHhcCCccEEEEC-CCcCC---------------------hHHHHHHHHHHHhCCCeEEEe
Confidence 999999999999999999999999888865 22211 123566666666666766654
No 104
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.16 E-value=6.8e-07 Score=92.27 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=48.9
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.+.||...||.++ =+.+|+++.|+||||+||||| ++++++...++.+++.+.++
T Consensus 140 ~~~tg~~vld~vl--~i~~Gq~~~IvG~sGsGKSTL-l~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 140 VLDTGVRAINALL--TVGRGQRMGLFAGSGVGKSVL-LGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp BCCCSCHHHHHHS--CCBTTCEEEEEECTTSSHHHH-HHHHHHHSCCSEEEEEEESC
T ss_pred ecCCCceEEeeeE--EecCCCEEEEECCCCCCHHHH-HHHHhcccCCCeEEEEEece
Confidence 4567899999985 688999999999999999999 99999999998899999887
No 105
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.16 E-value=2.1e-06 Score=78.05 Aligned_cols=124 Identities=8% Similarity=0.130 Sum_probs=64.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhccc----cccee-ecCCCCHHHHHHHHHHHHhc
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVD----VENLI-VCQPDNGEMALEIADRMCRS 219 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~----~~~l~-i~~~~~~ee~l~~i~~l~~~ 219 (440)
++.|+|++|||||+||.+++.. +.+++|+++...++..+.+++.-. +.... +-.+....+.+. .. .
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~l~---~~--~ 71 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLIT---AD--L 71 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTSC---TT--S
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHHHH---hh--c
Confidence 4789999999999999988744 568999999877666543332111 11222 222233332221 11 1
Q ss_pred CCcceEEEecccccCCchhhcc-----cchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013567 220 GAIDLICVDSVSALTPRAEIEG-----EIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQ 278 (440)
Q Consensus 220 ~~~~lvVIDsl~~l~~~~el~~-----~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inh 278 (440)
...+.|+||+++.+.. ..+.. +............+...+..|...+++...++|+++.
T Consensus 72 ~~~~~VLvDclt~wl~-n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlVsN 134 (180)
T 1c9k_A 72 APDDAILLECITTMVT-NLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTN 134 (180)
T ss_dssp CTTCEEEEECHHHHHH-HHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred ccCCeEEEcCHHHHHH-HHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEEEc
Confidence 1236899999999874 33321 1000000000122444555666666666666666654
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.14 E-value=4.3e-06 Score=93.70 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
+++|++++|.|||||||||| ++++.+...+..|.++++.
T Consensus 696 I~~GeivaIiGpNGSGKSTL-LklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTL-INVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EETTCEEEECSCCCHHHHHH-HHHHTTSSCCSEEEEEECT
T ss_pred EcCCCEEEEECCCCCCHHHH-HHHHhCCCCCCceEEEEcC
Confidence 78999999999999999999 9999999999999999864
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.13 E-value=1.5e-05 Score=72.96 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC---ChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF---DPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~---~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
.+|.++.++|+.|+||||.+++++.++...+.+++++...-.. ......++|+......+... +++++.+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~---~~i~~~~~--- 79 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS---REILKYFE--- 79 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS---THHHHHCC---
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH---HHHHHHHh---
Confidence 4688999999999999999999999998888899888522111 11234455654443333322 23333221
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYY 287 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~ 287 (440)
...++|+||..+.+.+ . + +..|..++. .+++||+.....+--+..|
T Consensus 80 --~~~dvViIDEaqfl~~-~-----------------~---v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F 125 (191)
T 1xx6_A 80 --EDTEVIAIDEVQFFDD-E-----------------I---VEIVNKIAE-SGRRVICAGLDMDFRGKPF 125 (191)
T ss_dssp --TTCSEEEECSGGGSCT-H-----------------H---HHHHHHHHH-TTCEEEEEECSBCTTSCBC
T ss_pred --ccCCEEEEECCCCCCH-H-----------------H---HHHHHHHHh-CCCEEEEEecccccccCcC
Confidence 2479999999877542 0 1 122233333 4899999977665333333
No 108
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.12 E-value=5.9e-06 Score=92.62 Aligned_cols=27 Identities=44% Similarity=0.688 Sum_probs=24.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
-+++|++++|+|||||||||| ++++.+
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTL-Lk~Lag 483 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTL-MRAIAN 483 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHH-HHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH-HHHHhC
Confidence 478999999999999999999 888874
No 109
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.07 E-value=3.4e-06 Score=83.80 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
+++|++++|+||+||||||| ++++.+...+..+.+.+++....... ..+ .+.+.......+...+...+
T Consensus 168 i~~g~~v~i~G~~GsGKTTl-l~~l~g~~~~~~g~i~i~~~~e~~~~~~~~-------~i~~~~ggg~~~r~~la~aL-- 237 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY-IKSIMEFIPKEERIISIEDTEEIVFKHHKN-------YTQLFFGGNITSADCLKSCL-- 237 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH-HHHGGGGSCTTSCEEEEESSCCCCCSSCSS-------EEEEECBTTBCHHHHHHHHT--
T ss_pred ccCCCEEEEECCCCCCHHHH-HHHHhCCCcCCCcEEEECCeeccccccchh-------EEEEEeCCChhHHHHHHHHh--
Confidence 46789999999999999999 99999999888999999875422111 111 12222111112222233333
Q ss_pred cCCcceEEEecccc
Q 013567 219 SGAIDLICVDSVSA 232 (440)
Q Consensus 219 ~~~~~lvVIDsl~~ 232 (440)
..+++++++|....
T Consensus 238 ~~~p~ilildE~~~ 251 (330)
T 2pt7_A 238 RMRPDRIILGELRS 251 (330)
T ss_dssp TSCCSEEEECCCCS
T ss_pred hhCCCEEEEcCCCh
Confidence 24789999998654
No 110
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.04 E-value=3.2e-06 Score=87.77 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=35.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc-E-EEEcC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN-A-MLVDA 179 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~-v-v~id~ 179 (440)
+++|+++.|.|||||||||| +++++++..+.+| . +++++
T Consensus 135 i~~Ge~v~IvGpnGsGKSTL-lr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSL-SRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHH-HHHHHHTTHHHHCCCCEEEEC
T ss_pred eCCCCEEEEECCCCCCHHHH-HHHHhCcccccCCceeEEEcC
Confidence 46899999999999999999 9999999887777 5 88886
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.99 E-value=1.8e-05 Score=73.68 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC---ChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF---DPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~---~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
.+|.++.++|+.|+||||.+++.+.++...+.+++++...-.. ......++|+..+.+.+... +++++.+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~---~~~~~~~~--- 99 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSAS---KDIFKHIT--- 99 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSG---GGGGGGCC---
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCH---HHHHHHHh---
Confidence 5689999999999999999999999999999999998643221 11245556665544433221 22222111
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
...++|+||..+.+.+ .. + ..++.| + ..+++||+.....+--+..|+
T Consensus 100 --~~~dvViIDEaQF~~~-~~----------------V-~~l~~l---~-~~~~~Vi~~Gl~~DF~~~~F~ 146 (214)
T 2j9r_A 100 --EEMDVIAIDEVQFFDG-DI----------------V-EVVQVL---A-NRGYRVIVAGLDQDFRGLPFG 146 (214)
T ss_dssp --SSCCEEEECCGGGSCT-TH----------------H-HHHHHH---H-HTTCEEEEEECSBCTTSCBCT
T ss_pred --cCCCEEEEECcccCCH-HH----------------H-HHHHHH---h-hCCCEEEEEecccccccCccc
Confidence 2579999999987642 10 1 233332 3 349999999887765554444
No 112
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.97 E-value=1.1e-05 Score=87.52 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=20.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHA 163 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~l 163 (440)
|++|++++|+|||||||||| +++
T Consensus 345 I~~Ge~vaIiGpnGsGKSTL-l~~ 367 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTL-VNE 367 (670)
T ss_dssp EETTSEEEEECSTTSSHHHH-HTT
T ss_pred ecCCCEEEEEeeCCCCHHHH-HHH
Confidence 67899999999999999999 544
No 113
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.91 E-value=0.0001 Score=72.09 Aligned_cols=107 Identities=20% Similarity=0.134 Sum_probs=69.0
Q ss_pred ccccCcHHHHHHhcCCCCC-------CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh------hhhh
Q 013567 124 TFPSGCLTLDLALGGGLPK-------GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS------YSKA 190 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~-------G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~------~a~~ 190 (440)
.+..+...|+..++++..+ |.++.+.|++|+||||++.+++..+...+..+++++........ +++.
T Consensus 72 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~ 151 (297)
T 1j8m_F 72 FIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQ 151 (297)
T ss_dssp HHHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhcc
Confidence 4567788899888655333 88999999999999999888888887778889999876432211 2333
Q ss_pred hcccccceeecCCCCHHHHHH-HHHHHHhcCCcceEEEeccccc
Q 013567 191 LGVDVENLIVCQPDNGEMALE-IADRMCRSGAIDLICVDSVSAL 233 (440)
Q Consensus 191 lGv~~~~l~i~~~~~~ee~l~-~i~~l~~~~~~~lvVIDsl~~l 233 (440)
.|++.-. .....+..+++. .+.. .+..+.++|+||....+
T Consensus 152 ~~v~v~~--~~~~~~p~~~~~~~l~~-~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 152 IGVPVYG--EPGEKDVVGIAKRGVEK-FLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTCCEEC--CTTCCCHHHHHHHHHHH-HHHTTCSEEEEECCCSC
T ss_pred CCeEEEe--cCCCCCHHHHHHHHHHH-HHhCCCCEEEEeCCCCc
Confidence 4443210 011234444433 3333 23356899999996544
No 114
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.89 E-value=0.0001 Score=69.44 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS 219 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~ 219 (440)
.|.+..++|+.|+||||.+++.+.++...+.+++++...-... .....++|+..+.+.+... +++++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~---~di~~~~------ 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLL---RDVAQEA------ 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSG---GGGHHHH------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCH---HHHHHHh------
Confidence 5899999999999999999999999998899999886432211 2344555665544443322 3333332
Q ss_pred CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccCC
Q 013567 220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGN 289 (440)
Q Consensus 220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~~ 289 (440)
...++|+||.++-+.. +..+.+.+.+.+++||+.....+--+..|+.
T Consensus 89 ~~~dvViIDEaQF~~~-----------------------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~ 135 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD-----------------------IVEFCEAMANAGKTVIVAALDGTFQRKPFGA 135 (234)
T ss_dssp TTCSEEEESSGGGCTT-----------------------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTT
T ss_pred ccCCEEEEEchhhhhh-----------------------HHHHHHHHHhCCCEEEEEecccccccCCccc
Confidence 4589999999887631 1122233345799999998887755554543
No 115
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.87 E-value=1.8e-05 Score=71.45 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
.++|+||||+||||| ++++.+...
T Consensus 2 ~i~l~G~nGsGKTTL-l~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL-VKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHG
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhC
Confidence 689999999999999 888888874
No 116
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.0001 Score=75.91 Aligned_cols=125 Identities=21% Similarity=0.235 Sum_probs=72.2
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
.|+++-+=++++||||+|||+||-.++..+ +...+++++....... ....+..+..+-...
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk~----------------~Gese~~ir~~F~~A 270 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDKY----------------IGESARIIREMFAYA 270 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCSS----------------SSHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhcccc----------------chHHHHHHHHHHHHH
Confidence 478888889999999999999966555443 3455556543322110 011222233333334
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
+...+.+|+||.+-++.+.....+..++. ...+.+..+|..+-.+-...++.||.+|.-.+.+.
T Consensus 271 ~~~~P~IifiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 271 KEHEPCIIFMDEVDAIGGRRFSEGTSADR---EIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHSCSEEEEEECCCSSSCCCSSSCCSSTT---HHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred HhcCCceeeeecccccccccccCCCCcch---HHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 45678899999999988643322211111 22334555565555444445677777766555443
No 117
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.84 E-value=2.9e-05 Score=78.39 Aligned_cols=112 Identities=14% Similarity=0.154 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
+++|++++|+||+||||||| ++++.+...+. .+.+++... .....+...+++.+++..=.++... ...+...+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl-l~~l~~~~~~~~~g~I~~~e~-~~e~~~~~~~~~v~Q~~~g~~~~~~---~~~l~~~L~ 207 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT-IASMIDYINQTKSYHIITIED-PIEYVFKHKKSIVNQREVGEDTKSF---ADALRAALR 207 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH-HHHHHHHHHHHSCCEEEEEES-SCCSCCCCSSSEEEEEEBTTTBSCS---HHHHHHHTT
T ss_pred hcCCCEEEEECCCCCCHHHH-HHHHHhhcCcCCCcEEEEecc-cHhhhhccCceEEEeeecCCCHHHH---HHHHHHHhh
Confidence 78899999999999999999 88888887764 555543322 2221122223333221000011122 123333333
Q ss_pred cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
.+++++++|.+... . .+..++ ..+ ..|.+|+.+.|..+
T Consensus 208 -~~pd~illdE~~d~---e----------------~~~~~l----~~~-~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 208 -EDPDVIFVGEMRDL---E----------------TVETAL----RAA-ETGHLVFGTLHTNT 245 (372)
T ss_dssp -SCCSEEEESCCCSH---H----------------HHHHHH----HHH-TTTCEEEECCCCCS
T ss_pred -hCcCEEEECCCCCH---H----------------HHHHHH----HHH-hcCCEEEEEECcch
Confidence 37899999987510 0 011122 222 46889999999865
No 118
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.84 E-value=0.00022 Score=70.80 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=52.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
.+.|+||||+|||||+..++...... +..++|++........ +...+|.... ....+..++...+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP----RRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC----SSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC----CCCCCHHHHHHHHHHHHh
Confidence 89999999999999965555444433 4678899865544331 2233333211 112345555655555443
Q ss_pred -cCCcceEEEeccccc
Q 013567 219 -SGAIDLICVDSVSAL 233 (440)
Q Consensus 219 -~~~~~lvVIDsl~~l 233 (440)
...+.+++||.+..+
T Consensus 122 ~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HTTCCEEEEEETGGGS
T ss_pred hcCCeEEEEEECcccc
Confidence 345779999998876
No 119
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=8e-05 Score=76.47 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=72.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
|+++.+=+.++||||+|||+||-.++..+ +...+.+++.+..... + ...+..+..+-...+
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~~----~------------Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHKY----L------------GEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCSS----C------------SHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhccc----c------------chhHHHHHHHHHHHH
Confidence 78888889999999999999966555443 3455556544322110 1 111222222222233
Q ss_pred cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
...+.++++|.+-++.+........++. ...+.+.++|..+-.+....++.||.+|...+.+.
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~---~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDR---EVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCC---HHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred HcCCCeeechhhhhhhccccCCCCCCCh---HHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 4578899999998887533221111111 23455677777776666667778888776655443
No 120
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.83 E-value=8.9e-05 Score=70.91 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=46.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
|+.++.-+.|+||||+|||+||..++..+ +...++++........ ....+..+..+-....
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKKF----------------IGEGASLVKDIFKLAK 107 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCCS----------------TTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHhc----------------cchHHHHHHHHHHHHH
Confidence 67788889999999999999965554332 4456666543221110 0111222222222233
Q ss_pred cCCcceEEEecccccCC
Q 013567 219 SGAIDLICVDSVSALTP 235 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~ 235 (440)
...+.+++||.+..+.+
T Consensus 108 ~~~~~vl~iDEid~l~~ 124 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAA 124 (285)
T ss_dssp HTCSEEEEEETTHHHHB
T ss_pred HcCCeEEEEECHHHhcc
Confidence 45678999999988864
No 121
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.82 E-value=8e-06 Score=72.54 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
-+++|+++.|.||+||||||| ++++.+.. +..+.+.+++..
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTL-lr~l~g~l-~~~G~V~~~g~~ 69 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTL-TRGMLQGI-GHQGNVKSPTYT 69 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHH-HHHHHHHT-TCCSCCCCCTTT
T ss_pred ccCCCCEEEEECCCCCCHHHH-HHHHHHhC-CCCCeEEECCEe
Confidence 478999999999999999999 99999998 777777766543
No 122
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.82 E-value=3.4e-06 Score=77.19 Aligned_cols=51 Identities=35% Similarity=0.441 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhhhccccc
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKALGVDVE 196 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~lGv~~~ 196 (440)
|+++.|+||||+||||| ++++++..+ ..| +.+++...... .+.+++|+.++
T Consensus 1 G~~i~i~G~nG~GKTTl-l~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~ 52 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL-IHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVV 52 (189)
T ss_dssp CCCEEEESCCSSCHHHH-HHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEE
T ss_pred CCEEEEECCCCChHHHH-HHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEE
Confidence 68899999999999999 888888887 556 66655433111 13445565544
No 123
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00012 Score=74.48 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=71.8
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-|+++-+=+.++||||+|||.||-.++..+ +...+.+++...... .+ ...+..+..+-...
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~sk----~v------------Gese~~vr~lF~~A 237 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQK----YI------------GEGSRMVRELFVMA 237 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSCS----ST------------THHHHHHHHHHHHH
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhcc----cc------------chHHHHHHHHHHHH
Confidence 377777779999999999999965555443 344555554322111 00 11222222222233
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
+...+.+|+||.+-++.+...-....++. ...+.+.+.|..|-.+....++.||.+|.-.+.+.
T Consensus 238 r~~aP~IIFiDEiDai~~~R~~~~~~~~~---~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 238 REHAPSIIFMDEIDSIGSTRVEGSGGGDS---EVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp HHTCSEEEEEESSSCCTTSCSCSSSGGGG---HHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred HHhCCceEeeecchhhccCCCCCCCCCcH---HHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 44678899999999988633222111111 22345666676666555566777777776655543
No 124
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00014 Score=74.54 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
.|+++-+=++++||||+|||.||..++..+ +...+.+++.+.... . ....+..+..+-...
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~sk----~------------vGesek~ir~lF~~A 271 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQK----Y------------LGDGPRLCRQIFKVA 271 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCCS----S------------SSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhhc----c------------CchHHHHHHHHHHHH
Confidence 588888889999999999999966555543 234555554322111 0 111222333322333
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
+...+.+|+||.+-++.+.....+..++. ...+.+.+.|..+-......++.||.+|.-.+.+.
T Consensus 272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~---~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 272 GENAPSIVFIDEIDAIGTKRYDSNSGGER---EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp HHTCSEEEEEEEESSSSCCCSCSSCSSCC---HHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred HhcCCcEEEEehhhhhcccCCCCCCCccH---HHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 45678899999999988643322221221 22334555665555544456677777776665554
No 125
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.79 E-value=7.1e-05 Score=75.80 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=24.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
-+.+| +++|+|+||+||||| +.++..+.
T Consensus 57 ~~~~G-~~~lvG~NGaGKStL-l~aI~~l~ 84 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSII-VDALGLLL 84 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHH-THHHHHHT
T ss_pred ecCCC-cEEEECCCCCCHHHH-HHHHHHHh
Confidence 57889 999999999999999 88886665
No 126
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.79 E-value=7.8e-05 Score=68.64 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=37.4
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
.|..+...+ .+..+.|+||||+|||||+..++..+...+..++|++...
T Consensus 42 ~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 42 ALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred HHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 344444333 6789999999999999998777777777777888887654
No 127
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.76 E-value=0.00013 Score=66.99 Aligned_cols=115 Identities=21% Similarity=0.226 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC--hhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD--PSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS 219 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~--~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~ 219 (440)
.|++..|+|+.|+||||..++.+.+....+.+++|+..+-... ..+..++|...+-..+. +.+++.+. .
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~---~~~d~~~~----~-- 89 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPAC---LLRDVAQE----A-- 89 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEES---SGGGGHHH----H--
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecC---CHHHHHHh----c--
Confidence 5899999999999999888999999998899999998663221 12344445443333322 22333332 1
Q ss_pred CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
..+++|+||.++-+ + . +.++++.| + +.|++||+.....+--+..|+
T Consensus 90 ~~~DvIlIDEaQFf-k-~-----------------~ve~~~~L---~-~~gk~VI~~GL~~DF~~~~F~ 135 (195)
T 1w4r_A 90 LGVAVIGIDEGQFF-P-D-----------------IVEFCEAM---A-NAGKTVIVAALDGTFQRKPFG 135 (195)
T ss_dssp HTCSEEEESSGGGC-T-T-----------------HHHHHHHH---H-HTTCEEEEEEESBCTTSSBCT
T ss_pred cCCCEEEEEchhhh-H-H-----------------HHHHHHHH---H-HCCCeEEEEecccccccccch
Confidence 24899999999887 4 1 11223222 2 679999999887765444443
No 128
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.74 E-value=3.1e-05 Score=86.52 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.+++|++++|+||||+||||| ++++..+
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTl-Lr~i~~i 696 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSY-IKQVALI 696 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHH-HHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHH-HHHHHHH
Confidence 367899999999999999999 7776544
No 129
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.74 E-value=1.9e-05 Score=70.99 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=32.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
++++|+++.|.|||||||||| ++++++. ++.+.+++++..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl-~~~La~~--~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTI-AEALANL--PGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHH-HHHHHTC--SSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHH-HHHHHhc--cCCCeEEEcccc
Confidence 588999999999999999999 6666665 567888888653
No 130
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.73 E-value=2.3e-05 Score=78.41 Aligned_cols=55 Identities=25% Similarity=0.257 Sum_probs=48.7
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
.+.||+..||.++ -+.+|++++|+||||+||||| ++++.+...++.+++.+.++.
T Consensus 54 ~~~tg~~ald~ll--~i~~Gq~~gIiG~nGaGKTTL-l~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 54 PFILGVRAIDGLL--TCGIGQRIGIFAGSGVGKSTL-LGMICNGASADIIVLALIGER 108 (347)
T ss_dssp EECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHH-HHHHHHHSCCSEEEEEEESCC
T ss_pred ecCCCCEEEEeee--eecCCCEEEEECCCCCCHHHH-HHHHhcCCCCCEEEEEEeccc
Confidence 4568999999986 688999999999999999999 999999998888888887764
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.72 E-value=8.1e-05 Score=73.57 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL---GGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~---~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
..+..+.|+||+|+|||||+..++..+... +..++|++........ +...+|.... ....+..++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~ 118 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP----FTGLSIAELYRR 118 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC----SSSCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHHHH
Confidence 457799999999999999966655555443 6678888854332221 1222332211 122345565665
Q ss_pred HHHHHhcC-CcceEEEecccccC
Q 013567 213 ADRMCRSG-AIDLICVDSVSALT 234 (440)
Q Consensus 213 i~~l~~~~-~~~lvVIDsl~~l~ 234 (440)
+...+... .+.+++||.+..+.
T Consensus 119 l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 119 LVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp HHHHHHTCCSCEEEEEETHHHHH
T ss_pred HHHHHhccCCeEEEEEcChhhhh
Confidence 55554443 37799999988765
No 132
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=0.00017 Score=71.08 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=22.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH-HhhcCCcEEEEcCCC
Q 013567 146 VEIFGPESSGKTTLALHAIAE-VQKLGGNAMLVDAEH 181 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~-~~~~~~~vv~id~E~ 181 (440)
+.|+||||+||||++ +.+++ +..++.+.+++++..
T Consensus 39 ~ll~Gp~G~GKTtl~-~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC-MALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp EEEECSTTSSHHHHH-HTHHHHHSCTTCCC-------
T ss_pred EEEECCCCCCHHHHH-HHHHHHHcCCCCCeEEeccee
Confidence 899999999999994 55555 666777777776543
No 133
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.69 E-value=0.00048 Score=67.56 Aligned_cols=88 Identities=15% Similarity=0.262 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHH-HHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMA-LEI 212 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~-l~~ 212 (440)
.+|+++.|+|+||+||||++..++..+...++.+++++.. ..... +.+..|++. +.-........+ ...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~--~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATV--ISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEE--ECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcE--EecCCccCHHHHHHHH
Confidence 5789999999999999999777776666666677777754 33221 333444432 000111222222 222
Q ss_pred HHHHHhcCCcceEEEecccc
Q 013567 213 ADRMCRSGAIDLICVDSVSA 232 (440)
Q Consensus 213 i~~l~~~~~~~lvVIDsl~~ 232 (440)
+... ...++++++||....
T Consensus 179 l~~a-~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 179 VAHA-LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHH-HHTTCSEEEEEECCC
T ss_pred HHHH-HhcCCCEEEEECCCc
Confidence 2222 234789999997754
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00013 Score=74.96 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=69.3
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-|+++-+=+.++||||+|||+||-.++..+ +...+.+++...... . ....+..+..+-...
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~~----~------------vGese~~ir~lF~~A 270 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQM----Y------------IGEGAKLVRDAFALA 270 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCSS----C------------SSHHHHHHHHHHHHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhhc----c------------cchHHHHHHHHHHHH
Confidence 478888889999999999999965555443 334555554322111 0 011222222222223
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
+...+.+++||.+-++.+.....+..++. ...+.+...|..|-.+....++.||.+|.-.+.+.
T Consensus 271 ~~~aP~IifiDEiDal~~~R~~~~~~~~~---~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 271 KEKAPTIIFIDELDAIGTKRFDSEKSGDR---EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp HHHCSEEEEEECTHHHHCCCSSGGGGTTH---HHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred HhcCCeEEeecchhhhhhccCCCCCCCch---HHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 34568899999998887533222111111 22334455555554444455677887776655543
No 135
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.67 E-value=4.7e-05 Score=76.41 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
-+++|++++|+||+||||||| ++++.+...+..+.+.++..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl-l~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL-MKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH-HHHHHTTSCTTSCEEEEESS
T ss_pred HHhcCCEEEEECCCCCCHHHH-HHHHHhcCCCCceEEEECCc
Confidence 356899999999999999999 99999999888999999854
No 136
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.66 E-value=0.00027 Score=69.55 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=49.4
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
|+..+..-+.|+||||+|||+||..++..+ .+...++++........ . ..+ +..+..+-...
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~~~----~-----------g~~-~~~~~~lf~~a 101 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSKW----L-----------GES-EKLVKNLFQLA 101 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCCSS----C-----------CSC-HHHHHHHHHHH
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHhhh----h-----------hHH-HHHHHHHHHHH
Confidence 556777889999999999999976665544 23456666654322110 0 111 22222222223
Q ss_pred hcCCcceEEEecccccCC
Q 013567 218 RSGAIDLICVDSVSALTP 235 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~ 235 (440)
+...+.+++||.+..+.+
T Consensus 102 ~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp HHTSSEEEEEETTTGGGC
T ss_pred HhcCCcEEEeecHHHhcc
Confidence 345678999999998865
No 137
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.66 E-value=6.7e-05 Score=82.43 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
|++++|+||||+||||| ++++.++..
T Consensus 576 g~i~~I~GpNGsGKSTl-Lr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTF-LRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHH-HHHHHHHHH
T ss_pred CcEEEEECCCCCChHHH-HHHHHhhhh
Confidence 89999999999999999 888888753
No 138
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.66 E-value=0.00037 Score=71.57 Aligned_cols=101 Identities=25% Similarity=0.226 Sum_probs=61.7
Q ss_pred HHHHHHhcCCC-------CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccc
Q 013567 130 LTLDLALGGGL-------PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDV 195 (440)
Q Consensus 130 ~~LD~~LgGGi-------~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~ 195 (440)
..|-.+|+++- .++.++.++|++|+||||++..++..+...+..+++++..- ..+. +....|+..
T Consensus 77 ~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~~ 155 (433)
T 3kl4_A 77 DELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQV 155 (433)
T ss_dssp HHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC-SCHHHHHHHHHHHHTTTCCE
T ss_pred HHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc-cchhHHHHHHHHHHhcCCce
Confidence 45555664331 24789999999999999999999888888888898888653 2221 223334322
Q ss_pred cceeecCCCCHHHHHHHHHHHHhcCCcceEEEeccccc
Q 013567 196 ENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSAL 233 (440)
Q Consensus 196 ~~l~i~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l 233 (440)
. ..........+....-......++++++||....+
T Consensus 156 ~--~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 156 Y--GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRH 191 (433)
T ss_dssp E--CCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCS
T ss_pred e--eccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCc
Confidence 1 11112233333322222233357899999987643
No 139
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.66 E-value=4.2e-05 Score=76.11 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=60.4
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-------hhhhhhcccccceeecC-
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-------SYSKALGVDVENLIVCQ- 202 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-------~~a~~lGv~~~~l~i~~- 202 (440)
.|+.+. --+.+|.++.|.|+||+||||| ++.+.+...+.++.+.+.+.+.... ....++++.+++..++.
T Consensus 44 ~l~~i~-~~~~~g~~v~i~G~~GaGKSTL-l~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 44 LIDAVL-PQTGRAIRVGITGVPGVGKSTT-IDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp HHHHHG-GGCCCSEEEEEECCTTSCHHHH-HHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred HHHhCC-cccCCCeEEEEECCCCCCHHHH-HHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence 344432 3467899999999999999999 8888888877666666555433211 12345666555432221
Q ss_pred --C--CCH----HHHHHHHHHHHhcCCcceEEEeccccc
Q 013567 203 --P--DNG----EMALEIADRMCRSGAIDLICVDSVSAL 233 (440)
Q Consensus 203 --~--~~~----ee~l~~i~~l~~~~~~~lvVIDsl~~l 233 (440)
+ .+. ....+.+. .+...+.++++||...-.
T Consensus 122 ~~~~~~~l~G~tr~~~e~~~-~~~~~~~~~iliDT~Gi~ 159 (337)
T 2qm8_A 122 PSPSSGTLGGVAAKTRETML-LCEAAGFDVILVETVGVG 159 (337)
T ss_dssp CCCCCSSHHHHHHHHHHHHH-HHHHTTCCEEEEEECSSS
T ss_pred cCcccccccchHHHHHHHHH-HHhcCCCCEEEEECCCCC
Confidence 1 111 22222221 234467899999998744
No 140
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.66 E-value=6.1e-05 Score=83.39 Aligned_cols=29 Identities=28% Similarity=0.525 Sum_probs=23.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHH-HHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHA-IAEVQ 168 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~l-i~~~~ 168 (440)
-|++|++++|+|+|||||||| ++. +.++.
T Consensus 519 ~i~~Geiv~I~G~nGSGKSTL-l~~~L~g~l 548 (842)
T 2vf7_A 519 RFPLGVMTSVTGVSGSGKSTL-VSQALVDAL 548 (842)
T ss_dssp EEESSSEEEEECCTTSSHHHH-CCCCCHHHH
T ss_pred EEcCCCEEEEEcCCCcCHHHH-HHHHHHHHH
Confidence 489999999999999999999 553 54443
No 141
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.64 E-value=0.00019 Score=66.81 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=73.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCC---hhhhhhhcccccceeecCCCCHHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFD---PSYSKALGVDVENLIVCQPDNGEMALEIADRM 216 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~---~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l 216 (440)
-..|.|..|+|+-|+||||.+++.+.++...+.+++.+...-... .....+.|...+-+.+... .++.+.+
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~---~di~~~i--- 98 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA---SEIMTHD--- 98 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG---GGGGGSC---
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH---HHHHHHH---
Confidence 356889999999999999987999999888888888876532211 1245666765554444322 2222211
Q ss_pred HhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccccccC
Q 013567 217 CRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYG 288 (440)
Q Consensus 217 ~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig~~~~ 288 (440)
...+++|+||..+-+.+ .++..|..++ ..|++||+..=..+--+..|+
T Consensus 99 --~~~~dvV~IDEaQFf~~---------------------~~v~~l~~la-~~gi~Vi~~GLd~DF~~~~F~ 146 (219)
T 3e2i_A 99 --LTNVDVIGIDEVQFFDD---------------------EIVSIVEKLS-ADGHRVIVAGLDMDFRGEPFE 146 (219)
T ss_dssp --CTTCSEEEECCGGGSCT---------------------HHHHHHHHHH-HTTCEEEEEEESBCTTSCBCT
T ss_pred --hcCCCEEEEechhcCCH---------------------HHHHHHHHHH-HCCCEEEEeecccccccCCCc
Confidence 24688999999887642 1122333444 579999988766654444443
No 142
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.64 E-value=0.00022 Score=79.85 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li 164 (440)
.+++|++++|+||||+||||| ++++
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTl-Lr~i 682 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTY-IRQT 682 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHH-HHHH
T ss_pred ecCCCeEEEEECCCCCCHHHH-HHHH
Confidence 357899999999999999999 6665
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.64 E-value=0.00092 Score=68.79 Aligned_cols=90 Identities=22% Similarity=0.220 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMALEIAD 214 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~l~~i~ 214 (440)
++.++.++|++|+||||++.+++..+.+.+..+++++... ..+. ++...|++.-.. ....+...+....-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~-~R~aa~eqL~~~~~~~gvpv~~~--~~~~dp~~i~~~al 175 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT-WRPGAYHQLRQLLDRYHIEVFGN--PQEKDAIKLAKEGV 175 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC-SSTHHHHHHHHHHGGGTCEEECC--TTCCCHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC-cchhHHHHHHHHHHhcCCcEEec--CCCCCHHHHHHHHH
Confidence 3679999999999999999999998888888999998753 2221 334444432111 11223333332222
Q ss_pred HHHhcCCcceEEEecccccC
Q 013567 215 RMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 215 ~l~~~~~~~lvVIDsl~~l~ 234 (440)
...+..+.++++||....+.
T Consensus 176 ~~a~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 176 DYFKSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp HHHHHTTCSEEEEECCCCSS
T ss_pred HHHHhCCCCEEEEECCCccc
Confidence 22334568999999876543
No 144
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.63 E-value=0.00013 Score=80.65 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
++|++++|+||||+||||| ++++.++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTl-Lr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTY-MRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHH-HHHHHHHH
Confidence 6899999999999999999 88887764
No 145
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.63 E-value=0.00016 Score=80.73 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLAL 161 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL 161 (440)
+++|++++|+|+||||||||..
T Consensus 607 I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 607 IPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp EESSSEEEEECSTTSSHHHHHH
T ss_pred EcCCcEEEEEccCCCChhhhHH
Confidence 6789999999999999999953
No 146
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.62 E-value=0.00024 Score=80.42 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
|++++|+||||+||||| ++.+ ++..
T Consensus 789 g~i~~ItGpNgsGKSTl-Lr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTL-MRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHH-HHHH-HHHH
T ss_pred CcEEEEECCCCCChHHH-HHHH-HHHH
Confidence 89999999999999999 7777 6543
No 147
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00032 Score=72.39 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=68.7
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-|+++-+=++|+||||+|||+||-.++..+ +...+.+++...... .+ ...+..+..+-...
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~sk----~v------------Gesek~ir~lF~~A 298 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQK----YV------------GEGARMVRELFEMA 298 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCCC----SS------------SHHHHHHHHHHHHH
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhcc----cC------------CHHHHHHHHHHHHH
Confidence 388888889999999999999965555443 234455554322111 01 11222222222233
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
+...+.++++|.+-.+.+...-.+. +.. ....+.+...|..|-......++.||.+|.-.+.+
T Consensus 299 r~~aP~IIfiDEiDai~~~R~~~~~-~~~--~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 299 RTKKACIIFFDEIDAVGGARFDDGA-GGD--NEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp HHTCSEEEEEECCTTTSBCCSSSSC-GGG--GHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred HhcCCceEeecccccccccccCcCC-Ccc--HHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 4567889999999988753322221 111 12233445555555444444566777776655544
No 148
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.60 E-value=0.00019 Score=80.18 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=21.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li 164 (440)
|++|++++|+|+||||||||+..++
T Consensus 647 I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 647 IPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999944434
No 149
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.59 E-value=0.00023 Score=70.42 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEMA 209 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee~ 209 (440)
..+..+.|+||||+|||||+..++..+... +..++|++........ +...++.... ....+..++
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~ 117 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP----FTGLSVGEV 117 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC----SSCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC----CCCCCHHHH
Confidence 346689999999999999976666655433 5678888876544432 2333433211 112335555
Q ss_pred HHHHHHHHhc-CCcceEEEecccccC
Q 013567 210 LEIADRMCRS-GAIDLICVDSVSALT 234 (440)
Q Consensus 210 l~~i~~l~~~-~~~~lvVIDsl~~l~ 234 (440)
+..+...+.. +...+++||.+..+.
T Consensus 118 ~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 118 YERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHHHhccCCeEEEEEccHhhhc
Confidence 5555544433 346799999988775
No 150
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.52 E-value=0.00024 Score=79.51 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=21.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li 164 (440)
-|++|++++|+|+||||||||+..++
T Consensus 664 ~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 664 SFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 37899999999999999999944434
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.51 E-value=0.00014 Score=71.18 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCcEEEE---cCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQK--LGGNAMLV---DAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIAD 214 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~~~~vv~i---d~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~ 214 (440)
..+|.+++|+|++||||||| ++++.+... +..+.+.+ |+... .....+.+|+. ++..+....+..+.+..+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl-~~~L~~~l~~~~~~G~i~vi~~d~~~~-~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTT-ARVLQALLSRWPEHRRVELITTDGFLH-PNQVLKERGLM-KKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHH-HHHHHHHHTTSTTCCCEEEEEGGGGBC-CHHHHHHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHH-HHHHHHHHhhCCCCCeEEEEecCCccC-cHHHHHhCCEe-ecCCCCCCccHHHHHHHHH
Confidence 47899999999999999999 788888876 66665555 44332 12223445555 4433344456677766665
Q ss_pred HH
Q 013567 215 RM 216 (440)
Q Consensus 215 ~l 216 (440)
.+
T Consensus 154 ~l 155 (308)
T 1sq5_A 154 DL 155 (308)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 152
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.50 E-value=0.00025 Score=68.27 Aligned_cols=38 Identities=37% Similarity=0.484 Sum_probs=29.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
-+++| +.|+||||+||||| ++++++.... +.+++++..
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtL-akala~~~~~--~~i~i~g~~ 79 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLL-AKAVANESGL--NFISVKGPE 79 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHH-HHHHHHHTTC--EEEEEETTT
T ss_pred CCCCe--EEEECCCCCcHHHH-HHHHHHHcCC--CEEEEEcHH
Confidence 34555 99999999999999 7777776644 577777654
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.49 E-value=0.00058 Score=66.57 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCCCCChh-------hhhhhcccccceeecCCCCHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
.+|+++.|+|++|+||||++..++..+.. .|..+.+++... .... +++..|+.. ....+..++...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~-~r~~a~eqL~~~~~~~gl~~-----~~~~~~~~l~~a 176 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT-YRIAAVEQLKTYAELLQAPL-----EVCYTKEEFQQA 176 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC-SSTTHHHHHHHHHTTTTCCC-----CBCSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc-ccchHHHHHHHHHHhcCCCe-----EecCCHHHHHHH
Confidence 36899999999999999997776666653 566888888654 2211 223334322 111233343333
Q ss_pred HHHHHhcCCcceEEEecc
Q 013567 213 ADRMCRSGAIDLICVDSV 230 (440)
Q Consensus 213 i~~l~~~~~~~lvVIDsl 230 (440)
+..+ .++++++||..
T Consensus 177 l~~~---~~~dlvIiDT~ 191 (296)
T 2px0_A 177 KELF---SEYDHVFVDTA 191 (296)
T ss_dssp HHHG---GGSSEEEEECC
T ss_pred HHHh---cCCCEEEEeCC
Confidence 3322 46899999944
No 154
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.47 E-value=0.00069 Score=63.52 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=41.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
|++...-+.|+||||+|||++|..++... +...++++........ .......+...+.. ..
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-a~ 95 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVI---------------GGLGAARVRSLFKE-AR 95 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSS---------------TTHHHHHHHHHHHH-HH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhc---------------cChhHHHHHHHHHH-HH
Confidence 55566678999999999999965554433 4566777654322110 00011112222222 22
Q ss_pred cCCcceEEEecccccCC
Q 013567 219 SGAIDLICVDSVSALTP 235 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~ 235 (440)
...+.+++||.+..+..
T Consensus 96 ~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp HTCSEEEEEECC-----
T ss_pred hcCCeEEEEeCcchhhc
Confidence 34578999999998864
No 155
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.43 E-value=0.00053 Score=60.17 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhh-------cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCH----HHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQK-------LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNG----EMAL 210 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~-------~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~----ee~l 210 (440)
.+..+.|+||+|+|||+|+..++..+.. .+..+++++...... ..... ..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 104 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-----------------GAKYRGEFEERLK 104 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT-----------------TTCSHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc-----------------cCCccccHHHHHH
Confidence 3567899999999999997777666644 234455554321000 00111 1122
Q ss_pred HHHHHHHhcCCcceEEEecccccCC
Q 013567 211 EIADRMCRSGAIDLICVDSVSALTP 235 (440)
Q Consensus 211 ~~i~~l~~~~~~~lvVIDsl~~l~~ 235 (440)
..+..+.+.....+++||.+..+.+
T Consensus 105 ~~~~~~~~~~~~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 105 GVLNDLAKQEGNVILFIDELHTMVG 129 (195)
T ss_dssp HHHHHHHHSTTTEEEEEETGGGGTT
T ss_pred HHHHHHhhcCCCeEEEEeCHHHHhc
Confidence 2333333445567999999998864
No 156
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.43 E-value=0.00017 Score=72.24 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=32.6
Q ss_pred CCCCC--CCEEEEEcCCCCcHHHHHHHHHHHHhhcCC----cEEEE
Q 013567 138 GGLPK--GRIVEIFGPESSGKTTLALHAIAEVQKLGG----NAMLV 177 (440)
Q Consensus 138 GGi~~--G~ii~I~G~~GsGKTTLaL~li~~~~~~~~----~vv~i 177 (440)
--+++ |+.++|+|+|||||||| ++++++...+.. |.+++
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTL-lk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVL-VNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHH-HHHHHHHTTCEEECCTTHHHH
T ss_pred HHHHHhhhCeEEEECCCCCCHHHH-HHHHHHHhCCCcchhhHHHHH
Confidence 45666 99999999999999999 899999987665 55665
No 157
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.43 E-value=8.9e-05 Score=72.19 Aligned_cols=123 Identities=22% Similarity=0.248 Sum_probs=64.4
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-|++++..+.|+||||+|||+||..+ ++.. +.+.+++++.. .....+|-. ......++..+
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~al-a~~~--~~~~i~v~~~~----l~~~~~g~~--------~~~~~~~f~~a---- 104 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAI-ANEC--QANFISIKGPE----LLTMWFGES--------EANVREIFDKA---- 104 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHH-HHHT--TCEEEEECHHH----HHHHHHTTC--------TTHHHHHHHHH----
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHH-HHHh--CCCEEEEEhHH----HHhhhcCch--------HHHHHHHHHHH----
Confidence 47889999999999999999995544 4433 35566665321 111111111 11122222222
Q ss_pred hcCCcceEEEecccccCCchhhc-ccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIE-GEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~-~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
....+.++++|.+..+.+..... ++.+.. ..+.+.+.+..+..+....++.||.+++..+.+
T Consensus 105 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~----~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 105 RQAAPCVLFFDELDSIAKARGGNIGDGGGA----ADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHTCSEEEEECSTTHHHHHHTTTTCCSSCS----CCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred HhcCCeEEEEEChHHHhhccCCCcCCcchH----HHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 23457899999998876422110 000000 012233444444333334567788887765544
No 158
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.42 E-value=0.00097 Score=62.79 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=41.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcce
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDL 224 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~l 224 (440)
-+.|+||||+|||||| +.+++.. +...++++........ . ......+...... .....+.+
T Consensus 47 ~vll~G~~GtGKT~la-~~la~~~--~~~~~~i~~~~~~~~~----~-----------~~~~~~~~~~~~~-a~~~~~~i 107 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLA-KAIAGEA--KVPFFTISGSDFVEMF----V-----------GVGASRVRDMFEQ-AKKAAPCI 107 (257)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHH--TCCEEEECSCSSTTSC----C-----------CCCHHHHHHHHHH-HHTTCSEE
T ss_pred eEEEECcCCCCHHHHH-HHHHHHc--CCCEEEEeHHHHHHHh----h-----------hhhHHHHHHHHHH-HHHcCCee
Confidence 3889999999999995 5555544 3456777654322110 0 1112222222222 22345679
Q ss_pred EEEecccccCC
Q 013567 225 ICVDSVSALTP 235 (440)
Q Consensus 225 vVIDsl~~l~~ 235 (440)
+++|.+..+.+
T Consensus 108 l~iDeid~l~~ 118 (257)
T 1lv7_A 108 IFIDEIDAVGR 118 (257)
T ss_dssp EEETTHHHHTC
T ss_pred ehhhhhhhhcc
Confidence 99999977764
No 159
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=0.00028 Score=63.92 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
..+.|+||+|+|||+|+..++..+...+..++|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 6889999999999999777776666667788888653
No 160
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.40 E-value=8.8e-05 Score=67.98 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=25.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
-+++|++++|.|||||||||| ++++.++..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL-l~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV-VRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH-HHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHH-HHHHHhhCC
Confidence 478999999999999999999 899998874
No 161
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.40 E-value=0.00022 Score=69.20 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=46.2
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
.|+++...+.|+||||+|||+||..++..+ +...++++.....+ ...|.. +....+++..+..+.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~----~~~g~~--------~~~i~~~f~~a~~~~ 95 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELES----GNAGEP--------AKLIRQRYREAAEII 95 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHC----C---HH--------HHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhh----ccCchh--------HHHHHHHHHHHHHHH
Confidence 466667789999999999999966555544 45666665421100 000100 001122333343344
Q ss_pred hcCCcceEEEecccccCC
Q 013567 218 RSGAIDLICVDSVSALTP 235 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~ 235 (440)
+...+.+++||.+-.+.+
T Consensus 96 ~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 96 RKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp TTSSCCCEEEECCC----
T ss_pred hcCCCeEEEEechhhhcC
Confidence 566788999999988775
No 162
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.39 E-value=0.0012 Score=64.88 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=21.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
+.+| +++|+|+||+||||| +..+.-+
T Consensus 22 ~~~g-~~~i~G~NGsGKS~l-l~ai~~l 47 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNI-IDAIKWV 47 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHH-HHHHHHT
T ss_pred cCCC-cEEEECCCCCcHHHH-HHHHHHH
Confidence 3566 999999999999999 7777744
No 163
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.38 E-value=0.00068 Score=66.21 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
..+..+.|+||||+|||||+..++..+...+..++|++.+
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4567899999999999999666666555557788888754
No 164
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.38 E-value=0.0026 Score=59.61 Aligned_cols=45 Identities=24% Similarity=0.183 Sum_probs=37.2
Q ss_pred CCCCE-EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh
Q 013567 141 PKGRI-VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP 185 (440)
Q Consensus 141 ~~G~i-i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~ 185 (440)
.+|++ +.+.|++|+||||++++++..+...|..+++++.+..-..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 35776 6778899999999999999999998989998888754333
No 165
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.37 E-value=8e-05 Score=69.17 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV 177 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i 177 (440)
-+++|++++|+|||||||||| ++++.+.. + |.+++
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTL-l~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTL-IKKLLNEF-P--NYFYF 53 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHH-HHHHHHHS-T--TTEEE
T ss_pred ecCCCCEEEEECCCCCCHHHH-HHHHHhhC-C--CcEEE
Confidence 367899999999999999999 88888877 4 44555
No 166
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.36 E-value=7.9e-05 Score=79.93 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=39.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCC------CChhhhhhhcccccceeecCCCCHHHHHHH
Q 013567 146 VEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHA------FDPSYSKALGVDVENLIVCQPDNGEMALEI 212 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~------~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~ 212 (440)
++|+||+||||||| ++++.+...+ +.|.+++++... ....+.+.+|+.+++..+.+..++.+.+..
T Consensus 48 iaIvG~nGsGKSTL-L~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 48 IAVIGDQSSGKSSV-LEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp EECCCCTTSCHHHH-HHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred EEEECCCCChHHHH-HHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 89999999999999 9999999877 677777766541 112345667777776555544444444433
No 167
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.36 E-value=0.00096 Score=65.79 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
..+|+++.|+|++|+||||++..++..+...++.+++++..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35789999999999999999888877777677888888765
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.36 E-value=0.0018 Score=67.29 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=62.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
-+|+| +.|+||||+|||+|| +.+++.. +...++++........ .|. ....+...+... .
T Consensus 47 ~~p~g--vLL~GppGtGKT~La-raia~~~--~~~f~~is~~~~~~~~----~g~-----------~~~~~r~lf~~A-~ 105 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLA-RAVAGEA--NVPFFHISGSDFVELF----VGV-----------GAARVRDLFAQA-K 105 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHH-HHHHHHH--TCCEEEEEGGGTTTCC----TTH-----------HHHHHHHHHHHH-H
T ss_pred CCCCe--EEEECCCCCCHHHHH-HHHHHHc--CCCeeeCCHHHHHHHH----hcc-----------cHHHHHHHHHHH-H
Confidence 34555 889999999999995 4454433 4456666644322110 010 111122222222 2
Q ss_pred cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
...+.+++||.+..+.+.......-++. ...+.+.+.+..+..+-...++.||.+++..+.+
T Consensus 106 ~~~p~ILfIDEid~l~~~r~~~~~g~~~---~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 106 AHAPCIVFIDEIDAVGRHRGAGLGGGHD---EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HTCSEEEEEETGGGTCCC---------C---HHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred hcCCCEEEEechhhhhhhcccccCcCcH---HHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 3568899999999886422110000110 1122334444444433345678888888876544
No 169
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.34 E-value=0.0029 Score=64.81 Aligned_cols=87 Identities=28% Similarity=0.360 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccccceeec-CCCCHHHHHH-H
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDVENLIVC-QPDNGEMALE-I 212 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l~i~-~~~~~ee~l~-~ 212 (440)
+++++.|+|++|+||||++..++..+...+..+++++.. ...+. +++..|++. +.. ...+..++.. .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v---~~~~~~~~p~~i~~~~ 172 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPV---LEVMDGESPESIRRRV 172 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCE---EECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc-ccCchhHHHHHHhcccCCccE---EecCCCCCHHHHHHHH
Confidence 688999999999999999888887777677788888864 33332 122333321 111 1123344422 2
Q ss_pred HHHHHhcCCcceEEEeccccc
Q 013567 213 ADRMCRSGAIDLICVDSVSAL 233 (440)
Q Consensus 213 i~~l~~~~~~~lvVIDsl~~l 233 (440)
+..+ +....++++||....+
T Consensus 173 l~~~-~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 173 EEKA-RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHHH-HHTTCSEEEEECCCCS
T ss_pred HHHH-HHCCCCEEEEcCCCcc
Confidence 3322 2356899999987654
No 170
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.34 E-value=9.3e-05 Score=71.30 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhccccc
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVE 196 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~ 196 (440)
.++|+||||+||||| ++++.+...+..|.++++++........+.+++.++
T Consensus 4 ~v~lvG~nGaGKSTL-ln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q 54 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL-VNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIE 54 (270)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHC------------CCCCCSCCEEEESCC
T ss_pred EEEEECCCCCCHHHH-HHHHhCCCCCCCCccccCCcccCcceeeeeeEEEee
Confidence 478999999999999 999999999988999888775533333344555544
No 171
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.32 E-value=0.0024 Score=61.20 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=45.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG 220 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~ 220 (440)
.++..+.|+||||+||||+|..++.. . +...++++........ ....+.....+-......
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~-~--~~~~~~i~~~~l~~~~----------------~~~~~~~~~~~~~~~~~~ 112 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATE-C--SATFLNISAASLTSKY----------------VGDGEKLVRALFAVARHM 112 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH-T--TCEEEEEESTTTSSSS----------------CSCHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH-h--CCCeEEeeHHHHhhcc----------------cchHHHHHHHHHHHHHHc
Confidence 35678999999999999996554433 2 3445556543221100 112233333322333345
Q ss_pred CcceEEEecccccCC
Q 013567 221 AIDLICVDSVSALTP 235 (440)
Q Consensus 221 ~~~lvVIDsl~~l~~ 235 (440)
.+.+++||.+..+.+
T Consensus 113 ~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLS 127 (297)
T ss_dssp CSEEEEEETGGGTSB
T ss_pred CCcEEEeccHHHhcc
Confidence 678999999998875
No 172
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.30 E-value=0.00055 Score=67.13 Aligned_cols=79 Identities=25% Similarity=0.316 Sum_probs=46.9
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
++..+..-+.|+||||+|||+||..++... +...++++.... ..... ...+..+..+-...
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l----~~~~~------------g~~~~~~~~~f~~a 106 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL----VSKWM------------GESEKLVKQLFAMA 106 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHH----HTTTG------------GGHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHH----hhccc------------chHHHHHHHHHHHH
Confidence 445566789999999999999966554442 445566654211 00001 11222232222233
Q ss_pred hcCCcceEEEecccccCC
Q 013567 218 RSGAIDLICVDSVSALTP 235 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~ 235 (440)
+...+.+++||.+..+.+
T Consensus 107 ~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 107 RENKPSIIFIDQVDALTG 124 (322)
T ss_dssp HHTSSEEEEEECGGGGSC
T ss_pred HhcCCeEEEechhhhhhc
Confidence 445678999999998875
No 173
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.28 E-value=0.00013 Score=66.82 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=26.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL 170 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~ 170 (440)
.++|++++|.|||||||||| ++++.+...+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl-~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTL-SNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHH-HHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 57899999999999999999 7888888765
No 174
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.27 E-value=0.0001 Score=68.76 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=30.1
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCC
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAE 180 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E 180 (440)
--+++|+++.|.|||||||||| ++++.+...+ ..+.+.+++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTL-lk~L~g~~~p~~~~g~v~~ttr 54 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSL-IQALLKTQPLYDTQVSVSHTTR 54 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHH-HHHHHHHSCTTTEEECCCEECS
T ss_pred ccCCCCcEEEEECCCCCCHHHH-HHHHhccCCCCceEEEEEecCC
Confidence 3578999999999999999999 8888888753 2344445443
No 175
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.26 E-value=0.00073 Score=67.39 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=45.4
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
++..+..-+.|+||||+|||+||..++..+ +...++++.... ... ++ ... +..+..+-...
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l-----~~~--------~~--g~~-~~~~~~~f~~a 139 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL-----VSK--------WM--GES-EKLVKQLFAMA 139 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHH-----HSC--------C-----C-HHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHH-----hhh--------hc--chH-HHHHHHHHHHH
Confidence 455666678999999999999966655544 344555543210 000 00 011 22222222223
Q ss_pred hcCCcceEEEecccccCC
Q 013567 218 RSGAIDLICVDSVSALTP 235 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~ 235 (440)
+...+.+|+||.+..+.+
T Consensus 140 ~~~~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 140 RENKPSIIFIDQVDALTG 157 (355)
T ss_dssp HHTSSEEEEEECGGGGTC
T ss_pred HHcCCeEEEEechHhhcc
Confidence 345678999999998875
No 176
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.25 E-value=0.0051 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 146 VEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
+.|+||+|+|||+++..++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 899999999999997777666543
No 177
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.24 E-value=0.00018 Score=65.03 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=27.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
+++|++++|.|||||||||| ++++.+.. + .++++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl-~~~L~~~~-~---~~~~~~~ 39 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSL-VRALVKAL-A---EIKISIS 39 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHH-HHHHHHHS-S---SEEECCC
T ss_pred CCCCcEEEEECcCCCCHHHH-HHHHHhhC-C---CeEEece
Confidence 36899999999999999999 78887774 2 3555543
No 178
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.23 E-value=0.00037 Score=61.19 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
.+..+.|+||+|+|||+|+..++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3557799999999999997777666544
No 179
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.21 E-value=0.00027 Score=69.38 Aligned_cols=43 Identities=30% Similarity=0.564 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567 130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV 177 (440)
Q Consensus 130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i 177 (440)
+.|+.+. =.+++|++++|+|||||||||| ++++.++. .|.++.
T Consensus 114 ~vL~~vs-l~i~~Ge~vaIvGpsGsGKSTL-l~lL~gl~---~G~I~~ 156 (305)
T 2v9p_A 114 NALKLWL-KGIPKKNCLAFIGPPNTGKSML-CNSLIHFL---GGSVLS 156 (305)
T ss_dssp HHHHHHH-HTCTTCSEEEEECSSSSSHHHH-HHHHHHHH---TCEEEC
T ss_pred hhhccce-EEecCCCEEEEECCCCCcHHHH-HHHHhhhc---CceEEE
Confidence 3455543 5899999999999999999999 89999988 444543
No 180
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.21 E-value=0.00023 Score=64.79 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF 183 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~ 183 (440)
++|+++.|.|+|||||||+ ++++.+.. +.+++++....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl-~~~L~~~~----g~~~i~~d~~~ 64 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTI-AHGVADET----GLEFAEADAFH 64 (200)
T ss_dssp -CCCEEEEECCTTSCHHHH-HHHHHHHH----CCEEEEGGGGS
T ss_pred CCCcEEEEECCCCCCHHHH-HHHHHHhh----CCeEEcccccc
Confidence 5799999999999999999 66666655 56788876543
No 181
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.16 E-value=0.0022 Score=61.69 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHhcCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCRSGA 221 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~ 221 (440)
...+.|+||||+|||++|..++......+...++++........ ..+.+|........... ..+. ..+....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~----~~~~~~~ 119 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLT----EAVRRRP 119 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHH----HHHHHCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHH----HHHHhCC
Confidence 35899999999999999655555554445668888765443332 33445544332211110 1111 2222234
Q ss_pred cceEEEecccccC
Q 013567 222 IDLICVDSVSALT 234 (440)
Q Consensus 222 ~~lvVIDsl~~l~ 234 (440)
..+++||.+..+.
T Consensus 120 ~~vl~lDEi~~l~ 132 (311)
T 4fcw_A 120 YSVILFDAIEKAH 132 (311)
T ss_dssp SEEEEEETGGGSC
T ss_pred CeEEEEeChhhcC
Confidence 5799999987764
No 182
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.14 E-value=0.00049 Score=70.71 Aligned_cols=51 Identities=31% Similarity=0.354 Sum_probs=40.8
Q ss_pred HHHHHhcCC---C--CCC--CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 131 TLDLALGGG---L--PKG--RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 131 ~LD~~LgGG---i--~~G--~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
.|..++++. + .++ .++.|+|++|+||||++.+++..+.+.+.++++++...
T Consensus 80 ~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 80 ELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp HHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred HHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 456667554 4 223 59999999999999999999988888888999998763
No 183
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.12 E-value=0.0004 Score=68.31 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=28.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLG 171 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~ 171 (440)
+++|++++|.|||||||||| ++++.++..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL-~~~L~gll~~~ 117 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTT-ARVLQALLARW 117 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHH-HHHHHHHHHTS
T ss_pred CCCCEEEEEECCCCchHHHH-HHHHHhhcccc
Confidence 78999999999999999999 88898988764
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.12 E-value=0.0038 Score=60.05 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEEcCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~id~E 180 (440)
+++.-+.|+||||+|||++|..++..+... ...+++++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 445679999999999999976666555442 2356777643
No 185
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.12 E-value=0.00035 Score=63.68 Aligned_cols=37 Identities=35% Similarity=0.446 Sum_probs=29.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
++|.+++|.||+||||||| ++++.+...+ .+.|++..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl-~~~l~~~~~~--~i~~v~~d 40 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTL-AQALARTLGE--RVALLPMD 40 (211)
T ss_dssp -CCEEEEEEESTTSSHHHH-HHHHHHHHGG--GEEEEEGG
T ss_pred CCcEEEEEECCCCCCHHHH-HHHHHHHhCC--CeEEEecC
Confidence 5789999999999999999 8888887754 35555543
No 186
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.10 E-value=0.0017 Score=63.18 Aligned_cols=90 Identities=24% Similarity=0.282 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcc--cccceeec---CCCCHHHHHH-HHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGV--DVENLIVC---QPDNGEMALE-IADR 215 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv--~~~~l~i~---~~~~~ee~l~-~i~~ 215 (440)
+|+++.|+|++|+||||++..++..+...++.+++++.... .......+.. ...++.+. ...+..++.. .+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~-~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ-RPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS-CHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc-cHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999987777776666778888876532 2211111110 01122222 1233444432 2333
Q ss_pred HHhcCCcceEEEeccccc
Q 013567 216 MCRSGAIDLICVDSVSAL 233 (440)
Q Consensus 216 l~~~~~~~lvVIDsl~~l 233 (440)
+. ..+.++|+||....+
T Consensus 176 ~~-~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 176 AR-LEARDLILVDTAGRL 192 (295)
T ss_dssp HH-HHTCCEEEEECCCCS
T ss_pred HH-hCCCCEEEEeCCCCc
Confidence 22 236899999987443
No 187
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.09 E-value=0.0024 Score=65.55 Aligned_cols=39 Identities=23% Similarity=0.139 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEH 181 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~ 181 (440)
+..+.|+||||+|||||+..++..+... +..++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 5679999999999999955554444333 67788887653
No 188
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.09 E-value=0.0073 Score=61.97 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=55.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCCCChh------hhhhhcccccceeecCC---CCHHHHHH-
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAEHAFDPS------YSKALGVDVENLIVCQP---DNGEMALE- 211 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~~~~~------~a~~lGv~~~~l~i~~~---~~~ee~l~- 211 (440)
..++.++|++|+||||++.+++..+... +.+++.++........ +....|+ .++.. .+..+++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l-----~v~~~~~~~dp~~i~~~ 174 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV-----DFFPSDVGQKPVDIVNA 174 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC-----EECCCCSSSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe-----eEEeCCCCCCHHHHHHH
Confidence 4689999999999999999999999888 8999999986422211 1222332 23222 23444432
Q ss_pred HHHHHHhcCCcceEEEeccccc
Q 013567 212 IADRMCRSGAIDLICVDSVSAL 233 (440)
Q Consensus 212 ~i~~l~~~~~~~lvVIDsl~~l 233 (440)
.+..+ +..+.++++||....+
T Consensus 175 ~l~~~-~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 175 ALKEA-KLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHH-HHTTCSEEEEECCCCC
T ss_pred HHHHH-HhCCCCEEEEECCCcc
Confidence 23332 2346899999996543
No 189
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.09 E-value=0.00045 Score=62.79 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E 180 (440)
++|+++.|.|++||||||+ .+.+++... .+..++|+++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl-~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL-ACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH-HHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHH-HHHHHHHHHhcCceEEEecCc
Confidence 6899999999999999999 555555544 34444588865
No 190
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.07 E-value=0.00036 Score=62.46 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
|-.+|++++|+||+||||||| ++.+.+..
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL-~~~L~~~~ 29 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHI-KNTLITKH 29 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHH-HHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 456899999999999999999 67776654
No 191
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.06 E-value=0.0064 Score=63.57 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=59.1
Q ss_pred HHHHHHhcC---CC----CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-------hhhhhcccc
Q 013567 130 LTLDLALGG---GL----PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-------YSKALGVDV 195 (440)
Q Consensus 130 ~~LD~~LgG---Gi----~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-------~a~~lGv~~ 195 (440)
..|..++++ ++ .+..++.|+|++|+||||++.+++..+.+.+..++.++..- ..+. +..+.++++
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~-~r~aa~~qL~~~~~~~~i~v 159 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT-FRAGAFDQLKQNATKARIPF 159 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC-SSSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc-cchhHHHHHHHHhhccCceE
Confidence 346666754 34 23558999999999999999999988887788899988642 2211 122233321
Q ss_pred cceeecCCCCHHHHH-HHHHHHHhcCCcceEEEecccccC
Q 013567 196 ENLIVCQPDNGEMAL-EIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 196 ~~l~i~~~~~~ee~l-~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
-. .....+..++. ..+..+ ...+.++++||....+.
T Consensus 160 ~~--~~~~~dp~~i~~~al~~~-~~~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 160 YG--SYTEMDPVIIASEGVEKF-KNENFEIIIVDTSGRHK 196 (504)
T ss_dssp EE--CCCCSCHHHHHHHHHHHH-HHTTCCEEEEEECCCCT
T ss_pred Ec--cCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCCcc
Confidence 00 01112233332 223332 23567899999876653
No 192
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.06 E-value=0.00026 Score=73.74 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=37.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
-+++ ++++|.|||||||||| ++++.++..+..|.+++++...
T Consensus 26 ~i~~-e~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTT-MAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHH-HHHHHHHHCCCTTTCCCCCTTS
T ss_pred EEcc-ceEEEECCCCCcHHHH-HHHHhcCCCCCCCEEEECCEEc
Confidence 4678 9999999999999999 9999999999888888887654
No 193
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.05 E-value=0.0012 Score=66.84 Aligned_cols=106 Identities=23% Similarity=0.240 Sum_probs=62.9
Q ss_pred cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChh--hhhhhcccccce
Q 013567 123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPS--YSKALGVDVENL 198 (440)
Q Consensus 123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~--~a~~lGv~~~~l 198 (440)
+.+.||+..+|-++ =+.+|+-+.|+||+|+|||||+..++..+.+. +-.|+|+---+..+.. +.+.+ .-.
T Consensus 156 ~~~~tGiraID~~~--pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~----~~~ 229 (422)
T 3ice_A 156 STEDLTARVLDLAS--PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV----KGE 229 (422)
T ss_dssp CTTHHHHHHHHHHS--CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC----SSE
T ss_pred Ccccccceeeeeee--eecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh----CeE
Confidence 46889999999987 67789999999999999999955544444332 3346665322211111 12222 112
Q ss_pred eec-CCC-CH-------HHHHHHHHHHHhcCCcceEEEecccccC
Q 013567 199 IVC-QPD-NG-------EMALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 199 ~i~-~~~-~~-------ee~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
.+. ..+ .. +..+..++.+...+.--++++|+++.+.
T Consensus 230 vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A 274 (422)
T 3ice_A 230 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 274 (422)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHH
Confidence 222 211 11 2233445555555555577889988764
No 194
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.05 E-value=0.00071 Score=63.63 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=27.1
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-+++| +.|+||||+||||| ++.+++... .+.+++++
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl-~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHL-ARAVAGEAR--VPFITASG 82 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHH-HHHHHHHTT--CCEEEEEH
T ss_pred CCCCe--EEEECCCCCCHHHH-HHHHHHHhC--CCEEEeeH
Confidence 45666 99999999999999 666666653 56666654
No 195
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.04 E-value=0.00028 Score=64.35 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=22.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
+++|++++|+||||+||||| ++++.+...
T Consensus 1 m~~g~~i~lvGpsGaGKSTL-l~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTL-LKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHH-HHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHHHhhCc
Confidence 35799999999999999999 888888763
No 196
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.02 E-value=0.0015 Score=72.09 Aligned_cols=122 Identities=25% Similarity=0.348 Sum_probs=70.0
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-|+.+-+=++|+||||+|||+||-.++.. + +...+++++.+... +. ....+..+..+-...
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~e-l--g~~~~~v~~~~l~s----k~------------~gese~~lr~lF~~A 293 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANE-T--GAFFFLINGPEIMS----KL------------AGESESNLRKAFEEA 293 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTT-T--TCEEEEEEHHHHHS----SC------------TTHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHH-h--CCeEEEEEhHHhhc----cc------------chHHHHHHHHHHHHH
Confidence 47777788999999999999996544432 2 33455554321100 00 011222222222223
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIG 284 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ig 284 (440)
+...+.+++||.+-.+.+..+-.. ++ ...+.+.+.+..+..+....++.||.++...+.+.
T Consensus 294 ~~~~PsIIfIDEiDal~~~r~~~~--~~----~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 294 EKNAPAIIFIDELDAIAPKREKTH--GE----VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp TTSCSEEEEEESGGGTCCTTTTCC--CT----THHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred HHcCCeEEEEehhcccccccCCCC--Ch----HHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 456788999999999986433211 11 12344556665555555567788888877655543
No 197
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0052 Score=60.48 Aligned_cols=98 Identities=16% Similarity=0.059 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-------CCcEEEEcCCCCCChh-----hhhhh-ccccc
Q 013567 130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGNAMLVDAEHAFDPS-----YSKAL-GVDVE 196 (440)
Q Consensus 130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-------~~~vv~id~E~~~~~~-----~a~~l-Gv~~~ 196 (440)
..|...+.+| ++..+.|+||||+|||+++..++..+... .-..+++++....++. +++.+ |.
T Consensus 34 ~~L~~~i~~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~--- 108 (318)
T 3te6_A 34 LPIYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE--- 108 (318)
T ss_dssp HHHHHHHHTT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC---
T ss_pred HHHHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC---
Confidence 3455556454 56678999999999999977777766532 2357888876544432 23333 21
Q ss_pred ceeecCCCCHHHHHHHHHHHH-hcCCcceEEEecccccC
Q 013567 197 NLIVCQPDNGEMALEIADRMC-RSGAIDLICVDSVSALT 234 (440)
Q Consensus 197 ~l~i~~~~~~ee~l~~i~~l~-~~~~~~lvVIDsl~~l~ 234 (440)
+ +......+.+......+. .....-++++|.+..+.
T Consensus 109 ~--~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 109 N--LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp C----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred C--CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 1 111122333333333321 23456688999988775
No 198
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.00 E-value=0.0014 Score=72.45 Aligned_cols=119 Identities=24% Similarity=0.386 Sum_probs=64.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHH-HHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMAL-EIADRMC 217 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l-~~i~~l~ 217 (440)
|+++++.++|+||||+||||| .+.+++.. +...+++++....... ....+..+ ..+.. .
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtL-arala~~l--~~~~i~v~~~~l~~~~----------------~g~~~~~l~~vf~~-a 293 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLI-ARAVANET--GAFFFLINGPEIMSKL----------------AGESESNLRKAFEE-A 293 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHH-HHHHHHTT--TCEEEEEEHHHHSSSS----------------TTHHHHHHHHHHHH-H
T ss_pred CCCCCCeEEEECcCCCCHHHH-HHHHHHHc--CCcEEEEEchHhhhhh----------------hhhHHHHHHHHHHH-H
Confidence 789999999999999999999 56665554 3345555542211100 01111111 12222 2
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
....+.++++|.+..+.+...... +. ...+.....+..+.......++.||.+++..+.+
T Consensus 294 ~~~~p~il~iDEid~l~~~~~~~~--~~----~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 294 EKNAPAIIFIDELDAIAPKREKTH--GE----VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHCSEEEEEESGGGTSCTTSCCC--SH----HHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HhcCCcEEEeccHHHhhhcccccc--ch----HHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 223578999999988875322111 11 1122233333333322334567888888775544
No 199
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.98 E-value=0.0013 Score=59.70 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
..+.|+||+|+|||||+..++....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999766655443
No 200
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.98 E-value=0.0022 Score=58.77 Aligned_cols=92 Identities=21% Similarity=0.332 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC-CCh---hhhhhhcccccce---eecCCCC-------HH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA-FDP---SYSKALGVDVENL---IVCQPDN-------GE 207 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~-~~~---~~a~~lGv~~~~l---~i~~~~~-------~e 207 (440)
+| .+.|++++|.||||.|+-++..++..|.+|+++.+-.. ... ...+++++.+... +...... ..
T Consensus 28 ~g-~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 28 RG-IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CC-CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred Cc-eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 44 67788889999999999999999999999999965432 111 2445554332211 1111111 12
Q ss_pred HHHHHHHHHHhcCCcceEEEecccccC
Q 013567 208 MALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 208 e~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
..+..+.+.+.++..++||+|.+....
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al 133 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMV 133 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccc
Confidence 234455666667889999999997654
No 201
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.97 E-value=0.00037 Score=73.16 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
+++|.+++|+||+||||||| ++++.+...++.+.+.+...
T Consensus 257 v~~g~~i~I~GptGSGKTTl-L~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTT-LNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHH-HHHHGGGSCTTCCEEEEESS
T ss_pred HhCCCEEEEECCCCCCHHHH-HHHHHhhCCCCCCEEEEcCc
Confidence 36789999999999999999 89999999888898888654
No 202
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.97 E-value=0.0016 Score=63.13 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=37.0
Q ss_pred CccccccCcHHHHHHh---c--CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 121 LVETFPSGCLTLDLAL---G--GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~L---g--GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
+...||||.+....+- . ..-..++++.|+|..|+||||++.+++..+++.+.+|+.||...
T Consensus 14 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 14 KDLTIPTGADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp --------------------------CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ccccCCcCccccchhhhhhccccccCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4456788777654432 1 22346789999999999999999999999999999999999874
No 203
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.95 E-value=0.0004 Score=62.20 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
|+++.|.|||||||||| ++.+.+ +..+.++++++
T Consensus 2 g~ii~l~G~~GaGKSTl-~~~L~~---~~~g~~~i~~d 35 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTT-CKRLAA---QLDNSAYIEGD 35 (189)
T ss_dssp EEEEEEECSTTSSHHHH-HHHHHH---HSSSEEEEEHH
T ss_pred CeEEEEECCCCCcHHHH-HHHHhc---ccCCeEEEccc
Confidence 67999999999999999 566554 44567888764
No 204
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.95 E-value=0.00032 Score=70.29 Aligned_cols=46 Identities=33% Similarity=0.407 Sum_probs=34.7
Q ss_pred cCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEc
Q 013567 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVD 178 (440)
Q Consensus 127 TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id 178 (440)
.|+..|...+ +|++++|+||||+||||| ++++.+... +..+.+.+.
T Consensus 204 ~gl~~L~~~~-----~G~~~~lvG~sG~GKSTL-ln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 204 DGLKPLEEAL-----TGRISIFAGQSGVGKSSL-LNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp BTHHHHHHHH-----TTSEEEEECCTTSSHHHH-HHHHHCCSSCCCCC-----
T ss_pred cCHHHHHHhc-----CCCEEEEECCCCccHHHH-HHHHhccccccccCCcccc
Confidence 4677777765 678999999999999999 899988877 777766654
No 205
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.93 E-value=0.0027 Score=63.40 Aligned_cols=89 Identities=17% Similarity=0.106 Sum_probs=53.7
Q ss_pred CCCEEEE--EcCCCCcHHHHHHHHHHHHhhc------CCcEEEEcCCCCCChh-----hhhhhcccccceeecCCCCHHH
Q 013567 142 KGRIVEI--FGPESSGKTTLALHAIAEVQKL------GGNAMLVDAEHAFDPS-----YSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 142 ~G~ii~I--~G~~GsGKTTLaL~li~~~~~~------~~~vv~id~E~~~~~~-----~a~~lGv~~~~l~i~~~~~~ee 208 (440)
.+..+.| +||+|+|||||+..++..+... +..++|++........ +.+.+|.... ....+..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~ 124 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALD 124 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHH
Confidence 4567888 9999999999977766655432 4567888864333321 2333443211 01223455
Q ss_pred HHHHHHHHHh-cCCcceEEEecccccC
Q 013567 209 ALEIADRMCR-SGAIDLICVDSVSALT 234 (440)
Q Consensus 209 ~l~~i~~l~~-~~~~~lvVIDsl~~l~ 234 (440)
+...+...+. ....-+++||.+..+.
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 5555444443 3456789999988764
No 206
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.92 E-value=0.0035 Score=56.35 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=55.8
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567 145 IVEIF-GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID 223 (440)
Q Consensus 145 ii~I~-G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~ 223 (440)
++.|+ +..|+||||++.+++..+.+.+.+++++|...... ....++....++.+..... +.+...++.+. ...+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~--~~yD 77 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS--LTNWSKAGKAAFDVFTAAS-EKDVYGIRKDL--ADYD 77 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH--HHHHHTTSCCSSEEEECCS-HHHHHTHHHHT--TTSS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC--HHHHHhcCCCCCcEEecCc-HHHHHHHHHhc--CCCC
Confidence 56666 56899999999999999999999999999863322 2222333334444443333 44555555542 3589
Q ss_pred eEEEeccccc
Q 013567 224 LICVDSVSAL 233 (440)
Q Consensus 224 lvVIDsl~~l 233 (440)
+|+||.-..+
T Consensus 78 ~viiD~~~~~ 87 (206)
T 4dzz_A 78 FAIVDGAGSL 87 (206)
T ss_dssp EEEEECCSSS
T ss_pred EEEEECCCCC
Confidence 9999986544
No 207
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.91 E-value=0.0006 Score=60.20 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF 183 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~ 183 (440)
.+|.++.|.|+|||||||+ .+.+.+.. +.+++++....
T Consensus 6 ~~g~~i~l~G~~GsGKSTl-~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAV-ASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHH-HHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHH-HHHHHHhh----CcEEEeCcccc
Confidence 4688999999999999999 56665544 56778775443
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.91 E-value=0.00094 Score=59.29 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=28.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~E 180 (440)
++|.++.|.|++||||||+ .+.+.....+ +..+++++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~-~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTV-SMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHH-HHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHH-HHHHHHHHhhCCCcEEEECCh
Confidence 6899999999999999999 5666555443 4457777643
No 209
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.90 E-value=0.00084 Score=69.07 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=47.1
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
|+..+..-+.|+||||+|||+||..++..+ .+...++++....... ..|. .......++..+
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~~----~~g~--------~~~~~~~~f~~a---- 223 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK----WLGE--------SEKLVKNLFQLA---- 223 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC---------------------CCCTHHHHHHHH----
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHhh----hcch--------HHHHHHHHHHHH----
Confidence 456677889999999999999966555543 2345666665432211 1111 112233333333
Q ss_pred hcCCcceEEEecccccCC
Q 013567 218 RSGAIDLICVDSVSALTP 235 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~ 235 (440)
+...+.+|+||.+..+.+
T Consensus 224 ~~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 224 RENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp HHSCSEEEEESCTTTTCC
T ss_pred HHcCCeEEEEechHhhcc
Confidence 235678999999998865
No 210
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.89 E-value=0.0006 Score=61.57 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=24.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL 170 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~ 170 (440)
+++|.+++|.|||||||||+ ++++.+...+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl-~~~L~~~~~~ 32 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTV-RKRIFEDPST 32 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHH-HHHHHHCTTC
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHHHHhhCC
Confidence 57899999999999999999 6777776543
No 211
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.87 E-value=0.0094 Score=57.22 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=46.7
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC--CcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLG--GNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM 208 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~--~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee 208 (440)
.|...+..|-.+. +.|+||+|+|||+++..++..+...+ ..+++++.... ...+.
T Consensus 32 ~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~ 88 (323)
T 1sxj_B 32 RLQQIAKDGNMPH--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD---------------------RGIDV 88 (323)
T ss_dssp HHHHHHHSCCCCC--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC---------------------CSHHH
T ss_pred HHHHHHHcCCCCe--EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc---------------------cChHH
Confidence 4455554443333 89999999999999777776654322 23455543221 12233
Q ss_pred HHHHHHHHHh------cCCcceEEEecccccC
Q 013567 209 ALEIADRMCR------SGAIDLICVDSVSALT 234 (440)
Q Consensus 209 ~l~~i~~l~~------~~~~~lvVIDsl~~l~ 234 (440)
+.+.+..+.. .+...+++||.+..+.
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 89 VRNQIKHFAQKKLHLPPGKHKIVILDEADSMT 120 (323)
T ss_dssp HHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred HHHHHHHHHhccccCCCCCceEEEEECcccCC
Confidence 3333343321 2247799999987765
No 212
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.86 E-value=0.00059 Score=64.15 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
-+++|.+++|.||+||||||| ++++.+..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl-~k~L~~~l 49 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTV-CEKIMELL 49 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHH-HHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHH-HHHHHHHh
Confidence 577899999999999999999 77777765
No 213
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.85 E-value=0.00069 Score=69.30 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.|+.++ ..+|.+++|+||+||||||| ++++.+...+..+.+++...
T Consensus 158 ~L~~l~---~~~ggii~I~GpnGSGKTTl-L~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 158 NFRRLI---KRPHGIILVTGPTGSGKSTT-LYAGLQELNSSERNILTVED 203 (418)
T ss_dssp HHHHHH---TSSSEEEEEECSTTSCHHHH-HHHHHHHHCCTTSCEEEEES
T ss_pred HHHHHH---HhcCCeEEEECCCCCCHHHH-HHHHHhhcCCCCCEEEEecc
Confidence 455554 37899999999999999999 88888888776665655443
No 214
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.84 E-value=0.00041 Score=62.35 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
|++++|.|||||||||| ++++.+...
T Consensus 1 ~~ii~l~GpsGaGKsTl-~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTL-LKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHH-HHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHH-HHHHHhhCC
Confidence 57899999999999999 888888765
No 215
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.84 E-value=0.0014 Score=64.98 Aligned_cols=87 Identities=18% Similarity=0.178 Sum_probs=52.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCcEEEEcCCCCC-Chh-----hhhhh-cccccceeecCCCCHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKL--------GGNAMLVDAEHAF-DPS-----YSKAL-GVDVENLIVCQPDNGE 207 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~--------~~~vv~id~E~~~-~~~-----~a~~l-Gv~~~~l~i~~~~~~e 207 (440)
+..+.|+||+|+|||+|+..++..+... +..++|++..... .+. +...+ |.... ....+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~ 120 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVP----KHGINLG 120 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCC----SSSSCTH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCC----CCCCCHH
Confidence 4589999999999999977776665443 6778888754322 221 12222 22111 1122334
Q ss_pred HHHHHHHHHHhcCCcceEEEecccccC
Q 013567 208 MALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 208 e~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
+++..+...+...+. +++||.+..+.
T Consensus 121 ~~~~~l~~~l~~~~~-vlilDEi~~l~ 146 (384)
T 2qby_B 121 EYIDKIKNGTRNIRA-IIYLDEVDTLV 146 (384)
T ss_dssp HHHHHHHHHHSSSCE-EEEEETTHHHH
T ss_pred HHHHHHHHHhccCCC-EEEEECHHHhc
Confidence 555555555544444 99999988764
No 216
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.83 E-value=0.0013 Score=62.93 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=27.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-+++| +.|+||||+||||| ++.+++... .+.+++++
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl-~~~i~~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHL-ARAVAGEAR--VPFITASG 106 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHH-HHHHHHHTT--CCEEEEEH
T ss_pred CCCCe--EEEECCCcChHHHH-HHHHHHHcC--CCEEEecH
Confidence 45666 89999999999999 677776653 56666654
No 217
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.0047 Score=64.65 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhh-hhhhcccccceeecCCCCHHHHHHHHH-HHHh
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSY-SKALGVDVENLIVCQPDNGEMALEIAD-RMCR 218 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~-a~~lGv~~~~l~i~~~~~~ee~l~~i~-~l~~ 218 (440)
++...+.|+||||+||||+|..++..+ +..+++++......... ...+.-......+. ..+..+. ....
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~ 145 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSKTLLNAGVKNALDNMSVV------GYFKHNEEAQNL 145 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCHHHHHHTGGGGTTBCCST------TTTTC----CCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchHHHHHHHHHHHhccccHH------HHHhhhhhhhhc
Confidence 456799999999999999966555444 56778887765443321 11111000000000 0000000 0112
Q ss_pred cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccc
Q 013567 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIR 280 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~ 280 (440)
.....+++||.+..+... . + ..+..|..++.+.+++||+++...
T Consensus 146 ~~~~~vliIDEid~l~~~-~--------~---------~~l~~L~~~l~~~~~~iIli~~~~ 189 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSGG-D--------R---------GGVGQLAQFCRKTSTPLILICNER 189 (516)
T ss_dssp STTSEEEEECSGGGCCTT-S--------T---------THHHHHHHHHHHCSSCEEEEESCT
T ss_pred cCCCeEEEEECCCccchh-h--------H---------HHHHHHHHHHHhcCCCEEEEEcCC
Confidence 245679999999888631 0 0 112334455566788888887653
No 218
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.82 E-value=0.0083 Score=60.21 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=44.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG 220 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~ 220 (440)
.++.-+.|+||||+|||+||..++.. .+...++++........ . ... +..+..+-......
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~~l~~~~----~-----------g~~-~~~~~~~~~~a~~~ 206 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAASLTSKY----V-----------GEG-EKLVRALFAVAREL 206 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSCCC----------------------C-HHHHHHHHHHHHHS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHHHhhccc----c-----------chH-HHHHHHHHHHHHhc
Confidence 45678999999999999996555333 34566777664322110 0 011 12222222223344
Q ss_pred CcceEEEecccccCC
Q 013567 221 AIDLICVDSVSALTP 235 (440)
Q Consensus 221 ~~~lvVIDsl~~l~~ 235 (440)
.+.+++||.+..+..
T Consensus 207 ~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLC 221 (389)
T ss_dssp SSEEEEEETGGGGC-
T ss_pred CCeEEEEECchhhcc
Confidence 678999999998864
No 219
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.81 E-value=0.0059 Score=60.70 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=45.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSG 220 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~ 220 (440)
.+..-+.|+||||+|||+||..++... +...++++........ ....+..+..+-......
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~~----------------~g~~~~~~~~~~~~a~~~ 175 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSKW----------------VGEGEKMVRALFAVARCQ 175 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCSS----------------TTHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhccc----------------cchHHHHHHHHHHHHHhc
Confidence 456689999999999999965554432 4556666654221110 001122222222223345
Q ss_pred CcceEEEecccccCC
Q 013567 221 AIDLICVDSVSALTP 235 (440)
Q Consensus 221 ~~~lvVIDsl~~l~~ 235 (440)
...+++||.+..+.+
T Consensus 176 ~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEEETHHHHTB
T ss_pred CCeEEEEeCchhhhc
Confidence 678999999988864
No 220
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.81 E-value=0.00037 Score=64.78 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=18.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHH-HHh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIA-EVQ 168 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~-~~~ 168 (440)
+++|++++|+|||||||||| ++++. +..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl-~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV-ANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CH-HHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHHhcCC
Confidence 57899999999999999999 77777 765
No 221
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=96.77 E-value=0.0006 Score=68.04 Aligned_cols=42 Identities=31% Similarity=0.302 Sum_probs=36.4
Q ss_pred cccccCcHHHHHHhc-CCCCCCCEEEEEcCCCCcHHHHHH----HHHHHH
Q 013567 123 ETFPSGCLTLDLALG-GGLPKGRIVEIFGPESSGKTTLAL----HAIAEV 167 (440)
Q Consensus 123 ~~i~TGi~~LD~~Lg-GGi~~G~ii~I~G~~GsGKTTLaL----~li~~~ 167 (440)
..++||+++||.+|| ||+|.|.++.|.|+ |||+++. +++++-
T Consensus 19 ~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~~Ll~~f~aeG 65 (361)
T 4a8j_A 19 PTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHSILGKLFAAQG 65 (361)
T ss_dssp EEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHHHHHHHHHHHH
T ss_pred eeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHHHHHHHHHHHh
Confidence 578999999999999 99999999999998 8999984 555533
No 222
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.76 E-value=0.0035 Score=60.88 Aligned_cols=87 Identities=11% Similarity=0.149 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC------Ch-h----hhhhhcc------------ccccee
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF------DP-S----YSKALGV------------DVENLI 199 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~------~~-~----~a~~lGv------------~~~~l~ 199 (440)
|.++.|+|++|+|||||+.+++... +++|++..... .. . +.+.++- ......
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 105 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT 105 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEeccee
Confidence 3799999999999999976666543 38898865321 11 1 1111110 000000
Q ss_pred e-cCCCCHHHHHHHHHHHHhcCCcceEEEecccccC
Q 013567 200 V-CQPDNGEMALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 200 i-~~~~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
+ .......+++..+..+....+.-+++||.++.+.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~ 141 (350)
T 2qen_A 106 LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR 141 (350)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence 0 0123556666666555443236689999998775
No 223
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.75 E-value=0.0015 Score=58.34 Aligned_cols=48 Identities=31% Similarity=0.331 Sum_probs=31.8
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.||.-. =.++|.++.|.|++||||||++-.++..+...+..+.+++++
T Consensus 3 ~~~~~~--~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 3 ALTTYK--CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp -----C--CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cccccc--ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 355533 235789999999999999999666555555556667788643
No 224
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.74 E-value=0.0037 Score=65.19 Aligned_cols=119 Identities=22% Similarity=0.352 Sum_probs=61.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCR 218 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~ 218 (440)
|+++..-+.|+||||+|||++|..++.. . +...++++....... .+| .....+...+.. ..
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~-~--~~~fv~vn~~~l~~~----~~g-----------~~~~~~~~~f~~-A~ 294 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE-T--GAFFFLINGPEIMSK----LAG-----------ESESNLRKAFEE-AE 294 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHH-C--SSEEEEEEHHHHHTS----CTT-----------HHHHHHHHHHHH-HH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHH-h--CCCEEEEEchHhhhh----hcc-----------hhHHHHHHHHHH-HH
Confidence 5677778999999999999996554333 2 456666664221100 000 001111122222 23
Q ss_pred cCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccccc
Q 013567 219 SGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYK 282 (440)
Q Consensus 219 ~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~ 282 (440)
...+.+++||.+..+.+...-.. ++ ...+.+...++.|...-...++.||.+++..+.
T Consensus 295 ~~~p~iLfLDEId~l~~~~~~~~--~~----~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 295 KNAPAIIFIDELDAIAPKREKTH--GE----VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HTCSEEEEEESHHHHCBCTTSCC--CH----HHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred hcCCcEEEecchhhhcccccccc--ch----HHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 35678999999988875322111 11 112233444444443333455666666665443
No 225
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.73 E-value=0.0079 Score=59.29 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=30.2
Q ss_pred cCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 137 GGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 137 gGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
..|..+|..+.|+||||+|||++|..++..+. .....+.++.
T Consensus 64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~ 105 (368)
T 3uk6_A 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAG 105 (368)
T ss_dssp HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEG
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccc
Confidence 36777789999999999999999666555543 3335555543
No 226
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.72 E-value=0.0024 Score=54.91 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.+.-+.|+||||+|||++|-.+.......+...+ ++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 3445899999999999996544433333344555 5544
No 227
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.72 E-value=0.002 Score=58.52 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=29.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id~ 179 (440)
-.++|.+++|.|++||||||| ++.+.+...+ +..+++++.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl-~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTL-ANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHH-HHHHHHHHHHTTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHH-HHHHHHHHhhcCCeEEEecc
Confidence 356789999999999999999 5666666544 445555543
No 228
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.69 E-value=0.001 Score=64.95 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=34.9
Q ss_pred cCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE---cCCCC
Q 013567 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV---DAEHA 182 (440)
Q Consensus 127 TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i---d~E~~ 182 (440)
.|++.|=..+ .|+++.|.||||+||||| ++++. ...+..|.+.+ .+.+.
T Consensus 154 ~gi~~L~~~l-----~G~i~~l~G~sG~GKSTL-ln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 154 EGIDELVDYL-----EGFICILAGPSGVGKSSI-LSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp TTHHHHHHHT-----TTCEEEEECSTTSSHHHH-HHHHH-SCCCCCSCC---------C
T ss_pred CCHHHHHhhc-----cCcEEEEECCCCCCHHHH-HHHHH-HhhCcccccccccCCCCCc
Confidence 4566665554 588999999999999999 88888 88788888887 55544
No 229
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=96.69 E-value=0.0042 Score=64.69 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=67.8
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--------cCCcEEEEcCCCCCChh--hhhh-
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK--------LGGNAMLVDAEHAFDPS--YSKA- 190 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~--------~~~~vv~id~E~~~~~~--~a~~- 190 (440)
.+.+.||+..+|.++ =+-+|+-..|+|++|+|||+||+..+.+... .+.-|+|.---+..... +.+.
T Consensus 143 ~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~ 220 (510)
T 2ck3_A 143 REPMQTGIKAVDSLV--PIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL 220 (510)
T ss_dssp CSBCCCSCHHHHHHS--CCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHH
T ss_pred Cccccccceeecccc--ccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHH
Confidence 356889999999987 4558999999999999999999988888776 44457776433322221 1111
Q ss_pred --hcccccceee-cCCCC--HHH------HHHHHHHHHhcCCcceEEEecccccC
Q 013567 191 --LGVDVENLIV-CQPDN--GEM------ALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 191 --lGv~~~~l~i-~~~~~--~ee------~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
-|..-.-+.+ ...+. ... .+.+++.+...+.--++++|+++.+.
T Consensus 221 ~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 275 (510)
T 2ck3_A 221 TDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 275 (510)
T ss_dssp HHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHH
Confidence 1211111222 22221 222 23345555444445577899988764
No 230
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.62 E-value=0.0011 Score=64.53 Aligned_cols=50 Identities=32% Similarity=0.371 Sum_probs=32.6
Q ss_pred cCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE---cCCCC
Q 013567 127 SGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV---DAEHA 182 (440)
Q Consensus 127 TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i---d~E~~ 182 (440)
.|+..|=..+ .|+++.|.||||+||||| ++++.+...+..|.+.+ .+.+.
T Consensus 158 ~gv~~lf~~l-----~geiv~l~G~sG~GKSTl-l~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 158 MGIEELKEYL-----KGKISTMAGLSGVGKSSL-LNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp TTHHHHHHHH-----SSSEEEEECSTTSSHHHH-HHHHSTTCCCC-------------C
T ss_pred cCHHHHHHHh-----cCCeEEEECCCCCcHHHH-HHHhcccccccccceecccCCCCCc
Confidence 3555554444 578999999999999999 99999999888888888 55543
No 231
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=96.62 E-value=0.0028 Score=65.92 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=67.8
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhh---ccccc
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKAL---GVDVE 196 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~l---Gv~~~ 196 (440)
.+.+.||+..+|.++ =+-+|+-..|+|++|+|||+|++..+.+....+..|+|.---+..... +.+.+ |..-.
T Consensus 156 ~epl~TGiraID~l~--PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~r 233 (515)
T 2r9v_A 156 DTPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEY 233 (515)
T ss_dssp CSEECCSCHHHHHHS--CEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGG
T ss_pred CcchhcCcccccccc--ccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcce
Confidence 356789999999987 455899999999999999999998888877655456776533322221 11111 11111
Q ss_pred ceee-cCCCC--HHH------HHHHHHHHHhcCCcceEEEecccccC
Q 013567 197 NLIV-CQPDN--GEM------ALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 197 ~l~i-~~~~~--~ee------~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
-+.+ ...+. ... .+.+++.+...+.--++++|+++.+.
T Consensus 234 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A 280 (515)
T 2r9v_A 234 TTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHA 280 (515)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHH
Confidence 1222 22221 222 23345555444445577899988664
No 232
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.62 E-value=0.0032 Score=65.40 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=67.9
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhh---hccccc
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKA---LGVDVE 196 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~---lGv~~~ 196 (440)
.+.+.||+..+|.++ =+-+|+-..|+|++|+|||+|++..+.+....+..|+|.---+..... +.+. -|..-.
T Consensus 143 ~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~ 220 (502)
T 2qe7_A 143 HEPLQTGIKAIDSMI--PIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDY 220 (502)
T ss_dssp CSBCCCSCHHHHHSS--CCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTT
T ss_pred CCccccceeeccccc--ccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcce
Confidence 456799999999987 455899999999999999999998888877655456776533322221 1111 121111
Q ss_pred ceee-cCCCC--HHH------HHHHHHHHHhcCCcceEEEecccccC
Q 013567 197 NLIV-CQPDN--GEM------ALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 197 ~l~i-~~~~~--~ee------~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
-+.+ ...+. ... .+.+++.+...+.--++++|+++.+.
T Consensus 221 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A 267 (502)
T 2qe7_A 221 TIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQA 267 (502)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 1222 22221 222 23345555444444577899988664
No 233
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.59 E-value=0.0013 Score=60.80 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=32.1
Q ss_pred cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
+..|...+ .|+|+...+.|+||||+||||+|+.++..+
T Consensus 45 ~~~l~~~~-~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFL-KGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHH-HTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 66777777 679988889999999999999987776654
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.58 E-value=0.0014 Score=60.10 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
++|++++|.||||+||||| ++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl-~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTV-REAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHH-HHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHH-HHHHHhhC
Confidence 5799999999999999999 55565554
No 235
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.0075 Score=59.21 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 013567 146 VEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~~ 167 (440)
+.|+||||+||||++..++..+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999955444443
No 236
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.57 E-value=0.04 Score=52.59 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=36.3
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 142 KGRIVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 142 ~G~ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
+.+++.|+++ +|.||||++.+++..+++.+.+|++||....
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4578999876 8999999999999999999999999998743
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.57 E-value=0.0039 Score=65.18 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=28.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
-+|+| +.|+||||+||||| ++.+++.. +.+.+++++..
T Consensus 62 ~ip~G--vLL~GppGtGKTtL-araIa~~~--~~~~i~i~g~~ 99 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHL-ARAVAGEA--RVPFITASGSD 99 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHH-HHHHHHHT--TCCEEEEEGGG
T ss_pred CCCce--EEEECCCCCCHHHH-HHHHHHHh--CCCEEEEehhH
Confidence 45666 89999999999999 56666655 36778887653
No 238
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.57 E-value=0.0029 Score=65.50 Aligned_cols=55 Identities=29% Similarity=0.437 Sum_probs=42.0
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEE
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLV 177 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~i 177 (440)
..+.+.||+..+|.+. -+-+|+.+.|+|++|+|||||+..++.+... .+.-++|.
T Consensus 131 ~~e~l~TGir~ID~L~--pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 131 EVEILETGIKVVDLLA--PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp SCCEECCSCHHHHHHS--CEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cCccccccchHHHHHh--hhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 3456899999999986 4557889999999999999997666666553 33445554
No 239
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=96.56 E-value=0.0047 Score=64.14 Aligned_cols=112 Identities=20% Similarity=0.294 Sum_probs=68.6
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh--hhhhhh---cccc
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP--SYSKAL---GVDV 195 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~--~~a~~l---Gv~~ 195 (440)
.-+.+.||+..+|.++ =+-+|+-..|+|++|+|||+|++..+.+....+..|+|.---+.... .+.+.+ |..-
T Consensus 142 v~epl~TGikaID~l~--PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~ 219 (513)
T 3oaa_A 142 VDQPVQTGYKAVDSMI--PIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALA 219 (513)
T ss_dssp CCCBCCCSCHHHHHHS--CCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHHSCST
T ss_pred cCcccccceeeecccc--ccccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhcCccc
Confidence 3457889999999987 45589999999999999999998888876555555777643322221 112222 2111
Q ss_pred cceeec-CCC-C-HHH------HHHHHHHHHhcCCcceEEEecccccC
Q 013567 196 ENLIVC-QPD-N-GEM------ALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 196 ~~l~i~-~~~-~-~ee------~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
.-+.+. ..+ . ... .+.+++.+...+.--++++|+++.+.
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 267 (513)
T 3oaa_A 220 NTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQA 267 (513)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHH
Confidence 122222 221 1 222 23344555445555577899988664
No 240
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.55 E-value=0.00035 Score=71.35 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.+.+++|.||||+||||| ++++.+...+..+.+.+++.
T Consensus 68 ~~~~valvG~nGaGKSTL-ln~L~Gl~~p~~GsI~~~g~ 105 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSF-INTLRGIGNEEEGAAKTGVV 105 (413)
T ss_dssp CCEEEEEEECTTSSHHHH-HHHHHTCCTTSTTSCCCCC-
T ss_pred CCeEEEEECCCCCcHHHH-HHHHhCCCCccCceEEECCe
Confidence 444999999999999999 99999988776666655543
No 241
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.54 E-value=0.046 Score=52.73 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=35.8
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 142 KGRIVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 142 ~G~ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
+++++.|+++ +|.||||+|.+++..+++.+.+|++||....
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 4578888775 8999999999999999998999999998754
No 242
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.52 E-value=0.001 Score=61.95 Aligned_cols=38 Identities=29% Similarity=0.208 Sum_probs=28.8
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
+..++|.++.|.|++||||||+ ++++.+. + +.+.+..+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl-~~~L~~~---~-g~v~~~~~ 52 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTY-LNHFEKY---K-NDICLLTE 52 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHH-HHTTGGG---T-TTEEEECC
T ss_pred CCCCCceEEEEECCCCCCHHHH-HHHHHhc---c-CCeEEEec
Confidence 3557899999999999999999 7777665 3 33445444
No 243
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.50 E-value=0.0019 Score=57.31 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
+.+| +++|+|||||||||| +.++..+..
T Consensus 24 ~~~g-~~~i~G~NGsGKStl-l~ai~~~l~ 51 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNI-GDAILFVLG 51 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHH-HHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHH-HHHHHHHHc
Confidence 4466 999999999999999 888877664
No 244
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.47 E-value=0.031 Score=54.15 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=40.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc----
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS---- 219 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~---- 219 (440)
.++.++||||+|||+++..++..+ +..+++++.... ..+.+...+......
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~----------------------~~~~i~~~~~~~~~~~~~~ 103 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDC----------------------KIDFVRGPLTNFASAASFD 103 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTC----------------------CHHHHHTHHHHHHHBCCCS
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccccc----------------------CHHHHHHHHHHHHhhcccC
Confidence 478999999999999965554433 445666664321 122222223332221
Q ss_pred CCcceEEEecccccC
Q 013567 220 GAIDLICVDSVSALT 234 (440)
Q Consensus 220 ~~~~lvVIDsl~~l~ 234 (440)
+..++++||.+..+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 257899999998764
No 245
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=96.46 E-value=0.055 Score=45.42 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=86.0
Q ss_pred CCEEEEE-cCCCCcHHHHHHHHHHHHhh--cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhc
Q 013567 143 GRIVEIF-GPESSGKTTLALHAIAEVQK--LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRS 219 (440)
Q Consensus 143 G~ii~I~-G~~GsGKTTLaL~li~~~~~--~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~ 219 (440)
+.++++. -.+|.|-..|.+.++..+.. .++.++||.....+........|++++++.+.++.+..+.++.+++.++.
T Consensus 2 ~~l~Ell~~~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrs 81 (119)
T 1ofu_X 2 AAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL 81 (119)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CceEEEeecCCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhc
Confidence 4467765 45788888887788877765 67889999887777777788899999999999999999999999999999
Q ss_pred CCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Q 013567 220 GAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFL 276 (440)
Q Consensus 220 ~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~i 276 (440)
+....|+.. +..+. ...+|+|...+.+.+++.+++
T Consensus 82 g~~~aVl~w-l~~l~---------------------~~~~RRLqlAA~~g~~~~~l~ 116 (119)
T 1ofu_X 82 GRSHTVVSW-LEPLS---------------------RAARKQLSRAAQLGQAQSLNI 116 (119)
T ss_dssp TCEEEEEEC-CSSCC---------------------HHHHHHHHHHHHHHTCEEEEE
T ss_pred CCccEEEEC-CCcCC---------------------hHHHHHHHHHHHhCCCeEEEe
Confidence 999888864 22211 123566666677777776664
No 246
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.46 E-value=0.0018 Score=57.61 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
|++++.++.|.|+|||||||++-.+...
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999996555543
No 247
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.46 E-value=0.00098 Score=59.69 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcC---CcEEEEcCCC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLG---GNAMLVDAEH 181 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~---~~vv~id~E~ 181 (440)
+++.|+|++||||||| ++++.+...+. .+.+.+++..
T Consensus 3 ~~v~IvG~SGsGKSTL-~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTL-ITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHH-HHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHhhhcCCceEEEEEcCcc
Confidence 5799999999999999 78888887765 6788887664
No 248
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=96.45 E-value=0.003 Score=65.77 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=69.4
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh--hhhhh---ccccc
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS--YSKAL---GVDVE 196 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~--~a~~l---Gv~~~ 196 (440)
-+.+.||+..+|.++ =+-+|+-..|+|++|+|||+|++..+.+....+..|+|.---+..... +.+.+ |..-.
T Consensus 144 ~epl~TGiraID~l~--PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~r 221 (507)
T 1fx0_A 144 YEPLQTGLIAIDAMI--PVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEY 221 (507)
T ss_dssp CSBCCCSCTTTTTTS--CCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGS
T ss_pred CCcccccceeccccc--ccccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCcccc
Confidence 356789999999987 455899999999999999999998888887666567776533322221 11111 11111
Q ss_pred ceee-cCCCC--------HHHHHHHHHHHHhcCCcceEEEecccccC
Q 013567 197 NLIV-CQPDN--------GEMALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 197 ~l~i-~~~~~--------~ee~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
-+.+ ...+. ..-.+.+++.+...+.--++++|+++.+.
T Consensus 222 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 268 (507)
T 1fx0_A 222 TIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA 268 (507)
T ss_dssp EEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 1222 21111 22344556655555555577899987653
No 249
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.45 E-value=0.0043 Score=61.75 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEc
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVD 178 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id 178 (440)
+.+.++.|+|+||+||||| ++.+.+...+. +.+..+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTL-ln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTF-IEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHH-HHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHH-HHHHHHHhhhcCCeEEEEe
Confidence 4577999999999999999 67776665544 4444443
No 250
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.43 E-value=0.0018 Score=56.75 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.|.++.|.|+|||||||+ .+++++... ..|+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl-~~~La~~l~----~~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTI-GRQLAQQLN----MEFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHH-HHHHHHHTT----CEEEEH
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHhC----CCEEec
Confidence 467899999999999999 677766652 356664
No 251
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.42 E-value=0.015 Score=58.09 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=35.8
Q ss_pred CCCCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 141 PKGRIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.+++++.|++ ..|+||||+|.+++..+++.+.+|+++|..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4577888886 799999999999999999889999999987
No 252
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.37 E-value=0.0008 Score=74.46 Aligned_cols=124 Identities=23% Similarity=0.242 Sum_probs=62.7
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
-|++++..+.|+||||+|||+|| +.+++.. +.+.+.+++...... .+|-. ......++..++.
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~La-kala~~~--~~~~i~v~~~~l~~~----~~g~~--------~~~i~~~f~~a~~-- 568 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLA-KAIANEC--QANFISIKGPELLTM----WFGES--------EANVREIFDKARQ-- 568 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHH-HHHHHHH--TCCCCCCCCSSSTTC----CTTTS--------SHHHHHHHHHHHH--
T ss_pred cCCCCCceeEEECCCCCCHHHHH-HHHHHHh--CCCEEEEechHhhhh----hcCcc--------HHHHHHHHHHHHh--
Confidence 47889999999999999999995 5555554 234444443322111 00000 0112223333332
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
..+.++++|.+..+.+...-.. ++ ......+.+.+.+..|.......++.||.+++..+.+
T Consensus 569 --~~p~vl~iDEid~l~~~r~~~~--~~-~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 569 --AAPCVLFFDELDSIAKARGGNI--GD-GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp --HCSBCCCCSSHHHHCCTTTTCC--SH-HHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred --cCCeEEEEEChhhhhhhccCCC--CC-cchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 3567899999988764221110 11 1112233444555444444445677778777665544
No 253
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.36 E-value=0.011 Score=55.85 Aligned_cols=38 Identities=26% Similarity=0.155 Sum_probs=26.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
+-++..-+.|+||||+|||+||..++... +...++++.
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 34556689999999999999966555542 445565543
No 254
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.35 E-value=0.0036 Score=57.19 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhh--cCCcEEEEcCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQK--LGGNAMLVDAE 180 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~--~~~~vv~id~E 180 (440)
+++|.++.|.|++||||||++- .+..... .+..+++++++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~-~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAV-ELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHH-HHHHHHHHHHCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH-HHHHHhccccCCcEEEECCh
Confidence 6789999999999999999954 4444443 34458888743
No 255
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.34 E-value=0.0025 Score=57.67 Aligned_cols=27 Identities=22% Similarity=0.069 Sum_probs=20.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
+++|.++.|.|+|||||||++..++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 568899999999999999995544433
No 256
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.32 E-value=0.012 Score=60.98 Aligned_cols=55 Identities=31% Similarity=0.472 Sum_probs=43.6
Q ss_pred CccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEE
Q 013567 121 LVETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLV 177 (440)
Q Consensus 121 ~~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~i 177 (440)
..+.+.||+..+|-++ =+-+|+-..|+|++|+|||+|+..++.+..+. +.-++|.
T Consensus 133 ~~e~l~TGir~ID~l~--pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 133 EQEILVTGIKVVDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp CCCEECCSCHHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred cCcCCccceEEEeccc--ccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 3467899999999987 45589999999999999999977777776543 2345654
No 257
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.31 E-value=0.0022 Score=58.20 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=28.5
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.-+++|.+++|+|++||||||+ .+.+.+... ++.+++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl-~~~L~~~~~---~~~~i~~D 54 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTL-AKNLQKHLP---NCSVISQD 54 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHH-HHHHHTTST---TEEEEEGG
T ss_pred ccCCCCeEEEEECCCCCCHHHH-HHHHHHhcC---CcEEEeCC
Confidence 3467899999999999999999 455544331 46666654
No 258
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.31 E-value=0.014 Score=56.77 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=36.1
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 142 KGRIVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 142 ~G~ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
+++++.|+++ +|.||||+|.+++..++..+.+|++||...
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4678999986 899999999999999999999999999875
No 259
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.30 E-value=0.012 Score=55.27 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=34.9
Q ss_pred CCCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 142 KGRIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 142 ~G~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
.++++.|++ ..|+||||++.+++..+.+.+.+|++||...
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 457888874 6899999999999999998899999999875
No 260
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.30 E-value=0.011 Score=59.67 Aligned_cols=106 Identities=20% Similarity=0.208 Sum_probs=63.1
Q ss_pred cccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc--CCcEEEEcCCCCCChh--hhhhh-cccccc
Q 013567 123 ETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL--GGNAMLVDAEHAFDPS--YSKAL-GVDVEN 197 (440)
Q Consensus 123 ~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~--~~~vv~id~E~~~~~~--~a~~l-Gv~~~~ 197 (440)
+.+.||+..+|.++ =+-+|+-..|+|++|+|||+|+.+++...... +-.|+|.---+..... +.+.+ | -
T Consensus 157 e~~~tGiraID~l~--PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G----~ 230 (427)
T 3l0o_A 157 DPKIYSTRLIDLFA--PIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNA----I 230 (427)
T ss_dssp STTCHHHHHHHHHS--CCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCS----E
T ss_pred cchhccchhhhhcc--cccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCC----e
Confidence 46789999999987 35589999999999999999976666665543 3346665332221110 11111 2 1
Q ss_pred eeecCCC-CH-------HHHHHHHHHHHhcCCcceEEEecccccC
Q 013567 198 LIVCQPD-NG-------EMALEIADRMCRSGAIDLICVDSVSALT 234 (440)
Q Consensus 198 l~i~~~~-~~-------ee~l~~i~~l~~~~~~~lvVIDsl~~l~ 234 (440)
+.....+ .. ...+..++.+...+.--++++|+++.+.
T Consensus 231 VV~atadep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A 275 (427)
T 3l0o_A 231 VIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLA 275 (427)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHH
Confidence 2222211 11 1234455555554444567789987664
No 261
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.26 E-value=0.0059 Score=64.39 Aligned_cols=101 Identities=20% Similarity=0.141 Sum_probs=57.6
Q ss_pred HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH---h-hcCCcEEEEcCCCCCChhh-------hhhhcccccce
Q 013567 130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV---Q-KLGGNAMLVDAEHAFDPSY-------SKALGVDVENL 198 (440)
Q Consensus 130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~---~-~~~~~vv~id~E~~~~~~~-------a~~lGv~~~~l 198 (440)
..|...|..+=....++.|.|++|.||||||.+++... . ....+++|++......... ...++... ..
T Consensus 134 ~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~-~~ 212 (591)
T 1z6t_A 134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDE-SF 212 (591)
T ss_dssp HHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSC-CS
T ss_pred HHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhcccc-cc
Confidence 44566664322346799999999999999988876532 1 1235788887654422211 11222100 00
Q ss_pred eecCCCCHHHHHHHHHHHHhcC-CcceEEEeccc
Q 013567 199 IVCQPDNGEMALEIADRMCRSG-AIDLICVDSVS 231 (440)
Q Consensus 199 ~i~~~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~ 231 (440)
.-..+.+.+.+...+...+... ..-++|+|.+.
T Consensus 213 ~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~ 246 (591)
T 1z6t_A 213 SQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW 246 (591)
T ss_dssp CSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred ccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC
Confidence 0112345666666666555432 45689999874
No 262
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.24 E-value=0.024 Score=55.24 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=31.0
Q ss_pred cHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh---cCCcEEEEcCC
Q 013567 129 CLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQK---LGGNAMLVDAE 180 (440)
Q Consensus 129 i~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~---~~~~vv~id~E 180 (440)
+..|...+..|-.++ +.|+||||+||||++..++..+.. ....++.++..
T Consensus 46 ~~~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 46 VTVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp HHHHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 345555554443333 899999999999996665555432 23345556543
No 263
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.21 E-value=0.00066 Score=64.31 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
++|.++.|.||+||||||+ .++++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl-~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTL-CKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHH-HHHHHHh
Confidence 6899999999999999999 6666643
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.20 E-value=0.005 Score=59.50 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.+.++.|.|||||||||++-.++... +.+.++|+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 46799999999999999976665433 235677875
No 265
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.19 E-value=0.016 Score=56.74 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
.++.+.|..|+||||+|.+++..+++.+.+++.+|...
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 57788889999999999999999999999999999875
No 266
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.18 E-value=0.027 Score=55.64 Aligned_cols=49 Identities=22% Similarity=0.244 Sum_probs=40.3
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
.|+.++.+. .-.++.+.|..|+||||+|.+++..++..+.+++.+|...
T Consensus 6 ~l~~~l~~~--~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 6 TLQSILDQR--SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp SSHHHHHCT--TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred cHHHHhcCC--CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 455556432 2468899999999999999999999999999999999873
No 267
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.16 E-value=0.0052 Score=58.27 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
++.++.|.|+|||||||+|-.+...+...+..+++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 46799999999999999977766665545666666664
No 268
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.16 E-value=0.0029 Score=67.00 Aligned_cols=40 Identities=30% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc--EEEEcCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN--AMLVDAE 180 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~--vv~id~E 180 (440)
+++|+++.|+|+|||||||| ++++++...+.++ +.++++.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTL-ar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTL-ARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHH-HHHHHHHHHTTCSSCEEEESSH
T ss_pred cccceEEEEECCCCChHHHH-HHHHHHhhcccCCceEEEECCc
Confidence 56899999999999999999 7788888776554 5568764
No 269
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.12 E-value=0.0035 Score=63.23 Aligned_cols=30 Identities=43% Similarity=0.481 Sum_probs=26.0
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
-++++|+++.|.||||+||||| ++++++..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl-~~~l~~~~ 193 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTL-AAALLELC 193 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHH-HHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHH-HHHHHhhc
Confidence 4899999999999999999999 66666654
No 270
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.08 E-value=0.0031 Score=69.44 Aligned_cols=124 Identities=21% Similarity=0.227 Sum_probs=60.8
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMC 217 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~ 217 (440)
.|+++..-++++||||+|||.+|-.++..+ +...+.+++.+ ....-+| .+ +..+..+-...
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~~----l~s~~vG-----------es-e~~vr~lF~~A 566 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE----LLTMWFG-----------ES-EANVREIFDKA 566 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHHH----HHTTTCS-----------SC-HHHHHHHHHHH
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHh---CCceEEeccch----hhccccc-----------hH-HHHHHHHHHHH
Confidence 578777779999999999999965544433 22222222110 1111111 12 22222222223
Q ss_pred hcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Q 013567 218 RSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKI 283 (440)
Q Consensus 218 ~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~~i 283 (440)
+...+.+++||.+-.+.+...... ++ ..+...|.+.++|..|-.+-...++.||..|...+.+
T Consensus 567 r~~~P~IifiDEiDsl~~~R~~~~--~~-~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 567 RQAAPCVLFFDELDSIAKARGGNI--GD-GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp HTTCSEEEECSCGGGCC-----------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred HHcCCceeechhhhHHhhccCCCC--CC-CchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 455788999999999886332110 00 0112234556666666555444555555555444433
No 271
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.05 E-value=0.014 Score=57.47 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc---CCcEEEEcCCC
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKL---GGNAMLVDAEH 181 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~---~~~vv~id~E~ 181 (440)
+++|.||+||||||| ++++.++... ++.+.+++...
T Consensus 94 iigI~GpsGSGKSTl-~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT-SRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhcccCCCCeEEEEeecc
Confidence 999999999999999 6777777652 34566666543
No 272
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.04 E-value=0.043 Score=51.02 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=33.6
Q ss_pred CCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 143 GRIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 143 G~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
++++.|++ ..|+||||++.+++..+.+.+.+|+++|...
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 35677765 5899999999999999999999999999875
No 273
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.04 E-value=0.0059 Score=54.02 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
|.++.|.|+|||||||++-.+...+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999655554443
No 274
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.03 E-value=0.015 Score=61.21 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH----HHhhcCCcEEEEcCCCCC--Chh-----hhhhhccccc--ceeecCCCCHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIA----EVQKLGGNAMLVDAEHAF--DPS-----YSKALGVDVE--NLIVCQPDNGE 207 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~----~~~~~~~~vv~id~E~~~--~~~-----~a~~lGv~~~--~l~i~~~~~~e 207 (440)
+...++.|+|+.|.||||||.++.. .....-.+++|++..... +.. +.+.++...+ .+.-.+..+.+
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 229 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSV 229 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHH
Confidence 3457999999999999999888775 233344688899766543 221 3344443321 11111222345
Q ss_pred HHHHHHHHHHhcCCcceEEEecccc
Q 013567 208 MALEIADRMCRSGAIDLICVDSVSA 232 (440)
Q Consensus 208 e~l~~i~~l~~~~~~~lvVIDsl~~ 232 (440)
++...+...+...+.-++|+|.+..
T Consensus 230 ~l~~~l~~~L~~~kr~LlVLDdv~~ 254 (549)
T 2a5y_B 230 VLKRMICNALIDRPNTLFVFDDVVQ 254 (549)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECC
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCC
Confidence 5566666665543255899998764
No 275
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.03 E-value=0.00095 Score=65.50 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV 177 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i 177 (440)
+.+|+++.|.|+||+||||| ++.+.+...+..+.+.+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTL-ln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSL-LNAISPELGLRTNEISE 206 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHH-HHHHCC-----------
T ss_pred hcCCCEEEEECCCCCCHHHH-HHHhcccccccccceee
Confidence 34789999999999999999 89988887777777776
No 276
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.02 E-value=0.021 Score=56.77 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
...+++|+|+||+|||||+.+++..+...+.++..++...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 3458999999999999998888888877788888887763
No 277
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.00 E-value=0.0027 Score=65.02 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=27.4
Q ss_pred HHHHhcCCCCCCCE--EEEEcCCCCcHHHHHHHHHHHH
Q 013567 132 LDLALGGGLPKGRI--VEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 132 LD~~LgGGi~~G~i--i~I~G~~GsGKTTLaL~li~~~ 167 (440)
|+.+- =-+++|++ ++|+||||+||||| ++++.+.
T Consensus 30 L~~vs-l~i~~Gei~~vaLvG~nGaGKSTL-ln~L~G~ 65 (427)
T 2qag_B 30 DQLVN-KSVSQGFCFNILCVGETGLGKSTL-MDTLFNT 65 (427)
T ss_dssp HHHHH-HSCC-CCEEEEEEECSTTSSSHHH-HHHHHTS
T ss_pred cCCCc-eEecCCCeeEEEEECCCCCCHHHH-HHHHhCc
Confidence 55432 36889999 99999999999999 8888876
No 278
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.99 E-value=0.019 Score=59.62 Aligned_cols=55 Identities=25% Similarity=0.474 Sum_probs=44.3
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc-CCcEEEEc
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-GGNAMLVD 178 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~-~~~vv~id 178 (440)
.+.+.||+..+|-++ =+-+|+-+.|+|++|+|||+|+..++.+..+. +.-++|.-
T Consensus 146 ~e~l~TGirvID~l~--pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~ 201 (498)
T 1fx0_B 146 LSIFETGIKVVNLLA--PYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG 201 (498)
T ss_dssp CCCCCCSCTTHHHHS--CCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE
T ss_pred ccccccceeEeeeec--ccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE
Confidence 456899999999987 46689999999999999999987888776543 34566653
No 279
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.99 E-value=0.0037 Score=56.76 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
+.+|.++.|+|||||||||++-.++.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999555444
No 280
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.99 E-value=0.02 Score=56.55 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=30.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
..+|.++.|.|+||+|||||+..++......+..+..++..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 35788999999999999999555544444456667666654
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.98 E-value=0.0068 Score=53.61 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
++.|.|+|||||||+|-.+...+...+..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999997666655544444566664
No 282
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.96 E-value=0.0005 Score=64.55 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=27.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
+++.|.|||||||||| +.++.++..+..+.+++++.
T Consensus 28 ~~~~i~GpnGsGKSTl-l~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTT-MAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp HHHHHHSCCSHHHHHH-HHHHHHHHSCCTTTC-----
T ss_pred cEEEEECCCCCCHHHH-HHHHhcccccCCCeEEECCE
Confidence 4678999999999999 99999999888777766654
No 283
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.95 E-value=0.033 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
..+.|+||+|+||||++..++..+
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999976555444
No 284
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.92 E-value=0.038 Score=54.74 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=40.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcc
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGV 193 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv 193 (440)
.-+.-.++.+.|..|+||||+|.+++..+++.+.+++.+|.... ......+|.
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~--~~l~~~l~~ 74 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA--HSLRDIFEQ 74 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT--CHHHHHHCS
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC--CCHHHHhCC
Confidence 33445677778899999999999999999999999999998752 233444444
No 285
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.91 E-value=0.0077 Score=54.19 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV 177 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i 177 (440)
+|.++.|.|+|||||||++-.+...+-..+ .++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 467999999999999999766655443333 44443
No 286
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.90 E-value=0.029 Score=58.63 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=31.6
Q ss_pred eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
+++||.++.+.. . ....+...+..|.+..+..|+++|+++|-..
T Consensus 300 vlvIDE~~~ll~-~-------------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMM-T-------------VGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHH-H-------------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHh-h-------------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 678898877752 0 0122456677777888889999999999865
No 287
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.021 Score=54.88 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 013567 146 VEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~~~ 168 (440)
+.|+||+|+||||++..++..+.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 89999999999999777666653
No 288
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.88 E-value=0.0054 Score=52.61 Aligned_cols=19 Identities=26% Similarity=0.079 Sum_probs=15.8
Q ss_pred CCEEEEEcCCCCcHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLAL 161 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL 161 (440)
+.-+.|+|+||+|||++|.
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 3458899999999999953
No 289
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.88 E-value=0.0053 Score=56.27 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
+|+++.|.||+|+||||| ++.+.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL-~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI-KNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHH-HHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHH-HHHHHhhC
Confidence 789999999999999999 55555543
No 290
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.88 E-value=0.023 Score=57.80 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
...++.|+|+|||||||+|-.++... +..+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D 290 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRD 290 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccc
Confidence 46899999999999999965554322 45556543
No 291
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.84 E-value=0.099 Score=50.84 Aligned_cols=82 Identities=18% Similarity=0.133 Sum_probs=46.4
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc---CCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHH
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL---GGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGE 207 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~---~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~e 207 (440)
.|...+..|= .-.+.++||||+||||++..++..+... ....++++.+. .....+
T Consensus 8 ~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------------~~~~id 65 (305)
T 2gno_A 8 TLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------ENIGID 65 (305)
T ss_dssp HHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------------SCBCHH
T ss_pred HHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------------CCCCHH
Confidence 3444443332 3489999999999999977776543111 11222222110 012445
Q ss_pred HHHHHHHHHHh---cCCcceEEEecccccC
Q 013567 208 MALEIADRMCR---SGAIDLICVDSVSALT 234 (440)
Q Consensus 208 e~l~~i~~l~~---~~~~~lvVIDsl~~l~ 234 (440)
++.+.++.... .++.++++||....+.
T Consensus 66 ~ir~li~~~~~~p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 66 DIRTIKDFLNYSPELYTRKYVIVHDCERMT 95 (305)
T ss_dssp HHHHHHHHHTSCCSSSSSEEEEETTGGGBC
T ss_pred HHHHHHHHHhhccccCCceEEEeccHHHhC
Confidence 55555544422 2346899999987775
No 292
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.83 E-value=0.026 Score=55.40 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=46.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCCh-hhhhh--hcccccceeecCC------CCHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDP-SYSKA--LGVDVENLIVCQP------DNGEMALEIAD 214 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~-~~a~~--lGv~~~~l~i~~~------~~~ee~l~~i~ 214 (440)
..+.|+||+|+|||++|..++..+....... . ..-.. ...+. -|..++ +....+ ...+++.+.++
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~----~-~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQG----H-KSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLGVDAVREVTE 98 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBT----T-BCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBCHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCC----C-CCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCCHHHHHHHHH
Confidence 4799999999999999887777665322110 0 00000 00111 122222 222222 34555555555
Q ss_pred HHHh---cCCcceEEEecccccC
Q 013567 215 RMCR---SGAIDLICVDSVSALT 234 (440)
Q Consensus 215 ~l~~---~~~~~lvVIDsl~~l~ 234 (440)
.+.. .++.++++||....+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT 121 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC
T ss_pred HHhhccccCCcEEEEECchhhcC
Confidence 4322 2457899999987764
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.82 E-value=0.011 Score=52.79 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.++.|.|++|||||||+.+++..+...+..+..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4799999999999999877777776666666666643
No 294
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.81 E-value=0.013 Score=54.14 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=33.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
+.|.|..|+||||++.+++..+.+.+.+|+.||....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5568999999999999999999999999999998753
No 295
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.81 E-value=0.026 Score=61.71 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=44.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcce
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDL 224 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~l 224 (440)
.+.|+||||+|||++|..++..+...+...++++.....+..... ...+.. .++.....+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----------------~~~l~~----~~~~~~~~v 582 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----------------GGQLTE----KVRRKPYSV 582 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------------------CHH----HHHHCSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----------------cchhhH----HHHhCCCeE
Confidence 699999999999999776666666667788888865432211000 111111 223345679
Q ss_pred EEEecccccC
Q 013567 225 ICVDSVSALT 234 (440)
Q Consensus 225 vVIDsl~~l~ 234 (440)
+++|.+..+.
T Consensus 583 l~lDEi~~~~ 592 (758)
T 3pxi_A 583 VLLDAIEKAH 592 (758)
T ss_dssp EEEECGGGSC
T ss_pred EEEeCccccC
Confidence 9999997664
No 296
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.80 E-value=0.0053 Score=57.45 Aligned_cols=23 Identities=43% Similarity=0.482 Sum_probs=20.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
+++++.|.|||||||||| +++++
T Consensus 26 ~~~~i~l~G~~GsGKSTl-~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV-CQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHH-HHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHH
Confidence 468999999999999999 66666
No 297
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.79 E-value=0.005 Score=55.59 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF 183 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~ 183 (440)
..++.|.|++||||||++-. +.... +..++++....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~-L~~~l----g~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEA-IAEAC----GYPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHH-HHHHH----TCCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHh----CCEEEeCCcCc
Confidence 46899999999999999544 44433 45667665433
No 298
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.76 E-value=0.011 Score=53.27 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV 177 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i 177 (440)
.+|.++.|.|++||||||++-.+...+...+-.+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 4688999999999999999766665554444444433
No 299
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.75 E-value=0.011 Score=54.98 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
..+.+|.++.|.|++||||||++ +.+......+ ..++...+
T Consensus 21 ~~~~~g~~i~i~G~~GsGKsT~~-~~l~~~l~~~-~~~~~~~~ 61 (229)
T 4eaq_A 21 QSNAMSAFITFEGPEGSGKTTVI-NEVYHRLVKD-YDVIMTRE 61 (229)
T ss_dssp CCCCCCEEEEEECCTTSCHHHHH-HHHHHHHTTT-SCEEEECT
T ss_pred eecCCCeEEEEEcCCCCCHHHHH-HHHHHHHhcC-CCceeecC
Confidence 45668999999999999999995 5555554443 33434333
No 300
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.71 E-value=0.028 Score=62.38 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=38.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh-------cCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHH-HHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQK-------LGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEM-ALEIADRM 216 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~-------~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee-~l~~i~~l 216 (440)
-+.|+||||+|||+++..++..+.. .+..+++++...... |.. . ....++ +...+..+
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------g~~------~-~g~~~~~l~~~~~~~ 258 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------GAK------Y-RGEFEERLKAVIQEV 258 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------cCc------c-chHHHHHHHHHHHHH
Confidence 4789999999999996666655543 144566665422110 000 0 011222 22333333
Q ss_pred HhcCCcceEEEecccccCC
Q 013567 217 CRSGAIDLICVDSVSALTP 235 (440)
Q Consensus 217 ~~~~~~~lvVIDsl~~l~~ 235 (440)
.......+++||.+..+.+
T Consensus 259 ~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 259 VQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp HTTCSSEEEEECCC-----
T ss_pred HhcCCCeEEEEecHHHHhc
Confidence 3333567899999998874
No 301
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.71 E-value=0.014 Score=61.98 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.+.++.|.|+||+||||++..++..+...+..+++...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 35799999999999999977777777777777777654
No 302
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.70 E-value=0.0068 Score=53.26 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
+.++.|.|+|||||||++-.+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999996554433
No 303
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.70 E-value=0.0056 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
.+|.++.|.|+|||||||++-.++.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999655443
No 304
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.68 E-value=0.014 Score=52.34 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=26.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
...-.++.|.|++|+|||||+..++..+...+..+..+.
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 344568999999999999996666655544444444443
No 305
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.67 E-value=0.043 Score=53.08 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=32.2
Q ss_pred HHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 131 TLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 131 ~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
.|+.+. . +.. .++.|+||+|+|||+|+.+++.... ..++|++...
T Consensus 21 el~~L~-~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 21 EIEKLK-G-LRA-PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp HHHHHH-H-TCS-SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred HHHHHH-H-hcC-CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 444444 3 544 6999999999999999776665542 3478998764
No 306
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.67 E-value=0.051 Score=55.84 Aligned_cols=69 Identities=28% Similarity=0.386 Sum_probs=38.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID 223 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~ 223 (440)
..+.|+||||+|||||| +.++... +...+.++.... + .....+++..+..........
T Consensus 51 ~~vLL~GppGtGKTtlA-r~ia~~~--~~~f~~l~a~~~---------~----------~~~ir~~~~~a~~~~~~~~~~ 108 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA-EVIARYA--NADVERISAVTS---------G----------VKEIREAIERARQNRNAGRRT 108 (447)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHT--TCEEEEEETTTC---------C----------HHHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCcHHHHH-HHHHHHh--CCCeEEEEeccC---------C----------HHHHHHHHHHHHHhhhcCCCc
Confidence 46999999999999995 4454443 223333332110 0 001122333333333345678
Q ss_pred eEEEecccccC
Q 013567 224 LICVDSVSALT 234 (440)
Q Consensus 224 lvVIDsl~~l~ 234 (440)
+++||.+..+.
T Consensus 109 iLfIDEI~~l~ 119 (447)
T 3pvs_A 109 ILFVDEVHRFN 119 (447)
T ss_dssp EEEEETTTCC-
T ss_pred EEEEeChhhhC
Confidence 99999998775
No 307
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.66 E-value=0.012 Score=57.44 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh-hcCCcEEEEcCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQ-KLGGNAMLVDAE 180 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~-~~~~~vv~id~E 180 (440)
+.-+.|+||+|+|||+||..++..+. ..+..++|++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 67899999999999999877777777 777888888753
No 308
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.64 E-value=0.011 Score=51.75 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.++.|.|+|||||||+|-.+... ..+..+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH----STTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh----cCCcEEecH
Confidence 47899999999999997655541 235677765
No 309
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.62 E-value=0.039 Score=54.91 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=41.2
Q ss_pred HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCC
Q 013567 130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHA 182 (440)
Q Consensus 130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~ 182 (440)
+.|+.++.. +.-.++...|..|.||||++.+++..++ +.+.+|+.+|....
T Consensus 7 ~~l~~l~~~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 7 PNLHSLITS--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SSCHHHHTC--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred ccHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 346666642 2245778889999999999999999999 88999999998864
No 310
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.62 E-value=0.038 Score=61.29 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=46.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCc
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAI 222 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~ 222 (440)
..+.|+||||+|||++|..+.......+...++++........ ..+.+|..+..+-.. ....+.. .++....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~---~~g~l~~----~~~~~~~ 661 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYE---EGGQLTE----AVRRRPY 661 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------CHHH----HHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCcc---ccchHHH----HHHhCCC
Confidence 4789999999999999766666665556788889876544432 222233222111000 0011111 2223446
Q ss_pred ceEEEecccccC
Q 013567 223 DLICVDSVSALT 234 (440)
Q Consensus 223 ~lvVIDsl~~l~ 234 (440)
.++++|.+..+.
T Consensus 662 ~vl~lDEi~~l~ 673 (854)
T 1qvr_A 662 SVILFDEIEKAH 673 (854)
T ss_dssp EEEEESSGGGSC
T ss_pred eEEEEecccccC
Confidence 799999997664
No 311
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.59 E-value=0.081 Score=51.36 Aligned_cols=63 Identities=24% Similarity=0.209 Sum_probs=37.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcce
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDL 224 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~l 224 (440)
.+.|+||||+|||+||..++... +...+.++..... ....+...+. ......+
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~---------------------~~~~~~~~~~---~~~~~~v 109 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIE---------------------KSGDLAAILT---NLSEGDI 109 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC---------------------SHHHHHHHHH---TCCTTCE
T ss_pred eEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhcc---------------------chhHHHHHHH---hccCCCE
Confidence 47999999999999966554332 3445555432111 1112212211 2245679
Q ss_pred EEEecccccC
Q 013567 225 ICVDSVSALT 234 (440)
Q Consensus 225 vVIDsl~~l~ 234 (440)
++||.+..+.
T Consensus 110 l~lDEi~~l~ 119 (338)
T 3pfi_A 110 LFIDEIHRLS 119 (338)
T ss_dssp EEEETGGGCC
T ss_pred EEEechhhcC
Confidence 9999998775
No 312
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.58 E-value=0.019 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 013567 146 VEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~~~ 168 (440)
+.|+||+|+|||+++..++..+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999777766654
No 313
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.55 E-value=0.0085 Score=52.01 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~ 165 (440)
.++.|.|++||||||++-.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999654443
No 314
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.52 E-value=0.0089 Score=55.54 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=29.2
Q ss_pred ccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 124 TFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 124 ~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
-+|.|...-+ .-+++.+++.|.|||||||+|.|-.++..+ +..+|++.
T Consensus 14 ~~p~~~~~~~----~~~~k~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstG 61 (217)
T 3umf_A 14 LVPRGSHMTD----QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSG 61 (217)
T ss_dssp --------------CCTTSCEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHH
T ss_pred cCCCCccccc----hhccCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHH
Confidence 3455544333 456788999999999999999976666543 45666654
No 315
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.51 E-value=0.015 Score=52.41 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=26.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEE
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAM 175 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv 175 (440)
..+|.++.|.|++||||||++-.+...+...+-.+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 456889999999999999996666555444444443
No 316
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.50 E-value=0.0032 Score=61.71 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
.+++|+|++||||||| ++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTl-l~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTL-LRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHH-HHHHHHSC
T ss_pred cEEEEEecCCCCHHHH-HHHHHhhc
Confidence 5899999999999999 78887765
No 317
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.43 E-value=0.0067 Score=57.18 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=27.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
+.+.++.|.|+|||||||++-.+...+ +.+.+++++..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 456799999999999999965554432 23567777754
No 318
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.42 E-value=0.084 Score=50.74 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
...+.|+||+|+|||+||..+.... +...++++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~ 72 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGP 72 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecc
Confidence 3568899999999999966555443 3455666543
No 319
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.41 E-value=0.0078 Score=52.00 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.2
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHA 163 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~l 163 (440)
.++.|.|+|||||||+|-.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999996555
No 320
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.41 E-value=0.017 Score=51.13 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
++.|.|++||||||++-.+...+...+-.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6899999999999997666555543455555443
No 321
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.39 E-value=0.011 Score=52.32 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.+.++.|.|++||||||++..++..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999976655443
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.39 E-value=0.011 Score=54.01 Aligned_cols=25 Identities=40% Similarity=0.598 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
+.++.|.|++||||||+ .+++.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl-~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTL-CKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHh
Confidence 56899999999999999 56666554
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.39 E-value=0.012 Score=52.56 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=25.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.++|.++.|+|++||||||++-.+...+. +..++|.
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~ 42 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELD----GFQHLEV 42 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHST----TEEEEEH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcC----CCEEeeH
Confidence 45688999999999999999544433212 4556654
No 324
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.39 E-value=0.13 Score=53.96 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
..++.++|.|||||||+|-.++..+-..+..+..|+.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~ 71 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 4689999999999999988877666445555666654
No 325
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.38 E-value=0.017 Score=53.93 Aligned_cols=40 Identities=25% Similarity=0.193 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
+.-++.+.|.+|+||||++.+++..+. .+.+++.++.+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 456899999999999999999998888 8889999987653
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.34 E-value=0.012 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=20.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.++.++.|.|++||||||+|-.++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999996555443
No 327
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.33 E-value=0.038 Score=59.67 Aligned_cols=28 Identities=36% Similarity=0.334 Sum_probs=22.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
+++++.++|+|++|+|||||+ ..+.+..
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl-~~L~~~~ 33 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLT-EALLYKT 33 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHH-HHHHHHT
T ss_pred cCCCcEEEEECCCCChHHHHH-HHHHHhc
Confidence 567899999999999999994 4444443
No 328
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.32 E-value=0.019 Score=51.11 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV 177 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i 177 (440)
++.|.|++||||||++-.+...+...+..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 689999999999999666655554445555543
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.32 E-value=0.01 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
+.++.|.|+|||||||+|-.++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999996655443
No 330
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.29 E-value=0.016 Score=61.53 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeeecc--CCC---CCCccccccCc-----------------HHHHHHhcC-CCCCCC
Q 013567 88 FLDRQRALDAAMNDINSSFGKGSVTRLG--SAG---GALVETFPSGC-----------------LTLDLALGG-GLPKGR 144 (440)
Q Consensus 88 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~--~~~---~~~~~~i~TGi-----------------~~LD~~LgG-Gi~~G~ 144 (440)
.+...+..++.+.++.+.|+.-.+..+. ... ......+.+++ +.||.++++ +-....
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~i~~vPl~~~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 328 (589)
T 1ihu_A 249 AAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVGVSALSRLLSTQPVASPSSDEYLQQRPDIPSLSALVDDIARNEHG 328 (589)
T ss_dssp HHHHHHHHHHHHHTCCHHHHTSCEEEEECCSSCCCSHHHHHHTTCSCC-----------CCCCCCCHHHHHHHHHTTSCE
T ss_pred HHHHHHHHHHHHHHHHHhccCCCEEEecCCCCCCCCHHHHHHHHhhhhccccccccccccccccchhhhhhhhhhccCCe
Confidence 4455566667777777777654432221 111 11233455555 678887743 233455
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
++.+.|.+|+||||++.+++..+.+.+..++++|....
T Consensus 329 ~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 329 LIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred EEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 77788999999999999999999999999999998743
No 331
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.25 E-value=0.012 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=20.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
..+.++.|.|+|||||||++..+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999655443
No 332
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.23 E-value=0.01 Score=59.30 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
++| +++|+|||||||||| +..+..+.
T Consensus 22 ~~g-~~~i~G~NGaGKTTl-l~ai~~al 47 (365)
T 3qf7_A 22 QSG-ITVVEGPNGAGKSSL-FEAISFAL 47 (365)
T ss_dssp CSE-EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CCC-eEEEECCCCCCHHHH-HHHHHHHh
Confidence 466 899999999999999 77776543
No 333
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.23 E-value=0.03 Score=56.23 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.++.+.|..|+||||++.+++..++..+.+++++|.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 477889999999999999999999999999999998
No 334
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.22 E-value=0.011 Score=55.80 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.++.|.|||||||||||..++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999987776543
No 335
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.20 E-value=0.0028 Score=57.15 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=22.9
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
-+++|..++|+|+||+||||| ++.+.+.
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTL-l~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSA-LNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHH-HTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 367899999999999999999 6655443
No 336
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.20 E-value=0.05 Score=52.76 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF 183 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~ 183 (440)
+.+.-+.|+|+||+|||++|-.+.....+.+...++++.....
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 3455789999999999999655555444556677888776543
No 337
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.18 E-value=0.013 Score=59.70 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=25.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKL 170 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~ 170 (440)
+++|+++.|+||||+||||| +..+..+..+
T Consensus 23 ~~~~~~~~i~G~nG~GKstl-l~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNM-MDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHH-HHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHH-HHHHHhhhcc
Confidence 45689999999999999999 8888877643
No 338
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.18 E-value=0.064 Score=58.51 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=45.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChh-hhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcc
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPS-YSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAID 223 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~-~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~ 223 (440)
.+.|+||||+|||++|..++..+ +...+.++..+..+.. ..+.+|..+. ....+....+...++.....
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g-------~~g~~~~~~l~~~~~~~~~~ 559 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPG-------YVGFDQGGLLTDAVIKHPHA 559 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSC-------SHHHHHTTHHHHHHHHCSSE
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCC-------CcCccccchHHHHHHhCCCc
Confidence 68999999999999965554444 4677788765443321 2222333221 11111111122233345568
Q ss_pred eEEEecccccC
Q 013567 224 LICVDSVSALT 234 (440)
Q Consensus 224 lvVIDsl~~l~ 234 (440)
++++|.+..+.
T Consensus 560 vl~lDEi~~~~ 570 (758)
T 1r6b_X 560 VLLLDEIEKAH 570 (758)
T ss_dssp EEEEETGGGSC
T ss_pred EEEEeCccccC
Confidence 99999998765
No 339
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.05 E-value=0.016 Score=51.88 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
.+|.++.|.|++||||||++-.+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3678999999999999999544443
No 340
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.05 E-value=0.016 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
+|.++.|.|+|||||||+|-.++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999996655543
No 341
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.02 E-value=0.011 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=14.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li 164 (440)
++.++.|.|+|||||||+|-.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999965543
No 342
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.99 E-value=0.013 Score=58.49 Aligned_cols=26 Identities=38% Similarity=0.708 Sum_probs=22.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
+++| ++.|+||||+||||+ +..+..+
T Consensus 24 ~~~g-~~~i~G~nG~GKttl-l~ai~~~ 49 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNL-LEAAYLA 49 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHH-HHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHH-HHHHHHh
Confidence 4677 999999999999999 8888763
No 343
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.97 E-value=0.014 Score=57.38 Aligned_cols=24 Identities=46% Similarity=0.508 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
+.+.|+||||+||||| ++++++..
T Consensus 52 ~~~ll~Gp~G~GKTTL-a~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL-AHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHh
Confidence 5789999999999999 77777766
No 344
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.97 E-value=0.021 Score=52.25 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
-++.|+|+||||||++|..++....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~ 30 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDE 30 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999988776654
No 345
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.97 E-value=0.018 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.+.++.|.|+|||||||+|-.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999996555443
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.90 E-value=0.015 Score=53.59 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=19.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
+..++.++.|.|+|||||||+|-.++.
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp ----CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999655544
No 347
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.86 E-value=0.018 Score=51.35 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.+.++.|.|++||||||+|-.+...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999996555443
No 348
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.85 E-value=0.12 Score=54.37 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=40.9
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
.+.+.||+..+|.++ =+-+|+-..|.|++|+|||+|+.+++ ... ...-++|.-.-+
T Consensus 208 ~epl~TGirvID~l~--PigkGqr~~I~g~~g~GKT~L~~~ia-~~~-~~~~~V~~~iGE 263 (588)
T 3mfy_A 208 EVPLITGQRVIDTFF--PQAKGGTAAIPGPAGSGKTVTQHQLA-KWS-DAQVVIYIGCGE 263 (588)
T ss_dssp CSEECCSCHHHHHHS--CEETTCEEEECSCCSHHHHHHHHHHH-HHS-SCSEEEEEECCS
T ss_pred CcccccCcchhhccC--CcccCCeEEeecCCCCCHHHHHHHHH-hcc-CCCEEEEEEecc
Confidence 356789999999987 45589999999999999999965543 322 223566654333
No 349
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.84 E-value=0.063 Score=56.77 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=32.3
Q ss_pred eEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecccc
Q 013567 224 LICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 281 (440)
Q Consensus 224 lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl~~ 281 (440)
+||||.+..+.... + ..+...+..|.+..+..|+.+|+.+|-..
T Consensus 346 vvVIDE~~~L~~~~------~--------~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 346 VVVVDEFADMMMIV------G--------KKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp EEEESCCTTHHHHT------C--------HHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred EEEEeCHHHHhhhh------h--------HHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 78899998876311 1 12445677788888999999999999754
No 350
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.82 E-value=0.031 Score=55.99 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF 183 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~ 183 (440)
...+.-+.|+|++|+||||++..++......+..++++|.....
T Consensus 32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 32 DRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp TBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred ccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 34566789999999999999766666677777888888876543
No 351
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.80 E-value=0.016 Score=55.99 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF 183 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~ 183 (440)
++-+++|.|++||||||+|-.+...+-..+..+.++++..-.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999665554443344457778766533
No 352
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.78 E-value=0.017 Score=55.91 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=23.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
.-.++.+++|.|++||||||| .+.+.+...
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTl-a~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFT-SIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHH-HHHHHHHhh
Confidence 345678999999999999999 455555554
No 353
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.78 E-value=0.01 Score=53.69 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV 177 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i 177 (440)
++.|.|++||||||++-.++..+...+..+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 789999999999999655554443333344444
No 354
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.73 E-value=0.019 Score=52.70 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
++.|.|||||||+|.|-.++... +..+|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHH
Confidence 67899999999999977666543 566777543
No 355
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.72 E-value=0.015 Score=52.51 Aligned_cols=29 Identities=41% Similarity=0.472 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
+++|+|++||||||+ .+++++ -+..++|+
T Consensus 4 ~i~l~G~~GsGKST~-~~~La~-----lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI-ANLFTD-----LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHH-HHHHHT-----TTCCEEEH
T ss_pred EEEEECCCCCCHHHH-HHHHHH-----CCCcccch
Confidence 789999999999999 555554 24555654
No 356
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.71 E-value=0.02 Score=49.57 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
+++|+||||+||||+ +..+.-+.
T Consensus 25 ~~~I~G~NGsGKSti-l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL-LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred eEEEECCCCCCHHHH-HHHHHHHH
Confidence 899999999999999 66665444
No 357
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.71 E-value=0.015 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.|..+.|.||+|+||||||+.++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999998877643
No 358
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.67 E-value=0.014 Score=55.30 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=27.0
Q ss_pred CCCC---CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPK---GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~---G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-+.+ |+++.|.|++||||||+ .++++... +..|+|.
T Consensus 41 ~i~~~l~g~~i~l~G~~GsGKSTl-~~~La~~l----g~~~~d~ 79 (250)
T 3nwj_A 41 EVKPYLNGRSMYLVGMMGSGKTTV-GKIMARSL----GYTFFDC 79 (250)
T ss_dssp TTHHHHTTCCEEEECSTTSCHHHH-HHHHHHHH----TCEEEEH
T ss_pred hhhhhcCCCEEEEECCCCCCHHHH-HHHHHHhc----CCcEEeC
Confidence 4555 89999999999999999 66666654 2345553
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.64 E-value=0.026 Score=52.95 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=25.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhc-----CCcEEEEcCCC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKL-----GGNAMLVDAEH 181 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~-----~~~vv~id~E~ 181 (440)
.+++|.|++||||||+|-.+...+-.+ +..++++++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 489999999999999965554433211 34566666543
No 360
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.62 E-value=0.032 Score=54.63 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=37.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
.+..-++++|+|.=|.||||++.+++..+++.|.+|+.||..-
T Consensus 44 ~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 44 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4566789999999999999999999999999999999999874
No 361
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.62 E-value=0.023 Score=57.45 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=25.7
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
|=++.|..++|+|+||+||||| ++.+.+
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL-~n~Ltg 42 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTF-FRAITK 42 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHH-HHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHH-HHHHHC
Confidence 6778899999999999999999 888887
No 362
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.61 E-value=0.034 Score=51.22 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=35.0
Q ss_pred CCCEEEEEc-CCCCcHHHHHHHHHHHHhhc-CCcEEEEcCCCC
Q 013567 142 KGRIVEIFG-PESSGKTTLALHAIAEVQKL-GGNAMLVDAEHA 182 (440)
Q Consensus 142 ~G~ii~I~G-~~GsGKTTLaL~li~~~~~~-~~~vv~id~E~~ 182 (440)
.++++.|++ ..|+||||++.+++..+.+. +.+|+++|....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 456777776 48999999999999999988 999999998744
No 363
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.59 E-value=0.02 Score=61.56 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
...+..|.||||+|||+...+++..+.+.+..++.....+.
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~ 244 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNI 244 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchH
Confidence 34699999999999999989999999888888777765543
No 364
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.57 E-value=0.037 Score=51.01 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV 177 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i 177 (440)
.+|.++.|.|++||||||++-.+...+...+..++..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3688999999999999999665555555555566544
No 365
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.56 E-value=0.029 Score=52.70 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=33.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
++.|.|..|+||||++.+++..+.+.+.+|+++|...
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 5677899999999999999999998899999999874
No 366
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.53 E-value=0.02 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~ 165 (440)
.++.|.|+|||||||+|-.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999655544
No 367
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.53 E-value=0.02 Score=51.55 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~ 166 (440)
+++|.|++||||||+ .+.+++
T Consensus 3 ~i~i~G~~GsGKSTl-~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV-AQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHH-HHHHHH
T ss_pred EEEEECCCCcCHHHH-HHHHHH
Confidence 689999999999999 555555
No 368
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.53 E-value=0.018 Score=60.73 Aligned_cols=26 Identities=42% Similarity=0.624 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
+|.++.|+||||+||||| .+.+++..
T Consensus 107 ~g~~vll~Gp~GtGKTtl-ar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL-AKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHhc
Confidence 799999999999999999 55655554
No 369
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.53 E-value=0.042 Score=62.44 Aligned_cols=101 Identities=19% Similarity=0.144 Sum_probs=59.0
Q ss_pred HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--h--cCCcEEEEcCCCCCChh-------hhhhhcccccce
Q 013567 130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ--K--LGGNAMLVDAEHAFDPS-------YSKALGVDVENL 198 (440)
Q Consensus 130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~--~~~~vv~id~E~~~~~~-------~a~~lGv~~~~l 198 (440)
..|...|..+=...+++.|+|+.|.||||||.+++.... . ...+++|++........ +...++.... .
T Consensus 134 ~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 212 (1249)
T 3sfz_A 134 HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEES-F 212 (1249)
T ss_dssp HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCT-T
T ss_pred HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcc-c
Confidence 345555532223457999999999999999988876532 1 34678899876543322 1122221110 0
Q ss_pred eecCCCCHHHHHHHHHHHHhcC-CcceEEEeccc
Q 013567 199 IVCQPDNGEMALEIADRMCRSG-AIDLICVDSVS 231 (440)
Q Consensus 199 ~i~~~~~~ee~l~~i~~l~~~~-~~~lvVIDsl~ 231 (440)
.-..+...+++.+.+...+... +.-++|+|.+.
T Consensus 213 ~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~ 246 (1249)
T 3sfz_A 213 SQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW 246 (1249)
T ss_dssp CSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC
T ss_pred ccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC
Confidence 1112345667777776665432 24488999875
No 370
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.51 E-value=0.02 Score=50.32 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~ 165 (440)
++.|.|+|||||||++-.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999655543
No 371
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.50 E-value=0.018 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
.++|+|++|+||||| ++.+.+..
T Consensus 31 kv~lvG~~g~GKSTL-l~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNL-LSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 689999999999999 66666654
No 372
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.46 E-value=0.025 Score=50.43 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~ 165 (440)
++.|.|++||||||++-.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999554443
No 373
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.44 E-value=0.023 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.+.++.|.|+|||||||++-.++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999996555443
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.43 E-value=0.025 Score=52.92 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.++.++.|.|+|||||||+|-.++... +..+++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEec
Confidence 456799999999999999976665443 3455554
No 375
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.41 E-value=0.061 Score=45.52 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=16.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li 164 (440)
-+.|+|++|+|||||..+++
T Consensus 5 ~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999954444
No 376
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.39 E-value=0.11 Score=50.96 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
+.++.|.||+|+|||||+..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999988776543
No 377
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=94.37 E-value=0.28 Score=46.10 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=69.7
Q ss_pred CCEEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcC----CCC-----CChhhh----hhh--cccccce--eec-CC
Q 013567 143 GRIVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDA----EHA-----FDPSYS----KAL--GVDVENL--IVC-QP 203 (440)
Q Consensus 143 G~ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~----E~~-----~~~~~a----~~l--Gv~~~~l--~i~-~~ 203 (440)
...+.|+|. +|+|||++++-++..+.+.+..+.||-. ... .+..+. +++ |+..+++ +.+ .|
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~p 100 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKV 100 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECCC
Confidence 456777885 9999999999999999999999999862 111 111122 222 4433221 222 22
Q ss_pred ---------------CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 013567 204 ---------------DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASK 268 (440)
Q Consensus 204 ---------------~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~ 268 (440)
...+++.+.++++ ....++++||....+... +..+ . ....+++.
T Consensus 101 ~sp~~aa~~~g~~~~i~~~~I~~~~~~l--~~~~D~vlIEGagGl~~p--l~~~-~----------------~~adlA~~ 159 (242)
T 3qxc_A 101 SAPLIAQQEEDPNAPIDTDNLTQRLHNF--TKTYDLVIVEGAGGLCVP--ITLE-E----------------NMLDFALK 159 (242)
T ss_dssp SCHHHHHHHHCTTCCCCHHHHHHHHHHG--GGTCSEEEEECCSCTTCB--SSSS-C----------------BHHHHHHH
T ss_pred CChHHHHHHcCCCCcCCHHHHHHHHHHH--HhcCCEEEEECCCCcccc--cccc-c----------------hHHHHHHH
Confidence 2344444444443 246789999998877632 1110 0 01234556
Q ss_pred cCCEEEEEeccc
Q 013567 269 AGCTLIFLNQIR 280 (440)
Q Consensus 269 ~~~tVI~inhl~ 280 (440)
.+.+||++....
T Consensus 160 l~~pVILV~~~~ 171 (242)
T 3qxc_A 160 LKAKMLLISHDN 171 (242)
T ss_dssp HTCEEEEEECCS
T ss_pred cCCCEEEEEcCC
Confidence 689999987654
No 378
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.35 E-value=0.025 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
..++.|.|++||||||+|-.++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999655543
No 379
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.35 E-value=0.025 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
..++.|.|++||||||+|-.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999655544
No 380
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.34 E-value=0.067 Score=53.15 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=45.4
Q ss_pred HHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHh--hcCCcEEEEcCCCCCChhhhhhhcc
Q 013567 130 LTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQ--KLGGNAMLVDAEHAFDPSYSKALGV 193 (440)
Q Consensus 130 ~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~--~~~~~vv~id~E~~~~~~~a~~lGv 193 (440)
+.|+.++.. +.-+++.+.|..|+||||+|.+++..++ ..+.+++.+|... .......+|.
T Consensus 7 ~~L~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~--~~~l~~~~~~ 68 (348)
T 3io3_A 7 PTLESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP--AHNLSDAFCQ 68 (348)
T ss_dssp SSSHHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS--SCHHHHHHTS
T ss_pred hhHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC--CCChHHHhcc
Confidence 346666642 2347999999999999999999999999 8899999999873 3333444443
No 381
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.33 E-value=0.036 Score=52.95 Aligned_cols=38 Identities=26% Similarity=0.504 Sum_probs=34.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
+++.|.|..|+||||+|.+++..+.+.+.+|+.||...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 36777899999999999999999998899999999874
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.30 E-value=0.028 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.+.|.|+|||||||+|-.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999996555443
No 383
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.26 E-value=0.031 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=17.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li 164 (440)
+++.|.|++||||||++-.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 689999999999999965444
No 384
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.21 E-value=0.05 Score=56.16 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=35.5
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.+.+.||+..+|.++ =+-+|+-..|+|++|+|||+|+.+++...
T Consensus 133 ~e~l~TGir~ID~l~--pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~ 176 (469)
T 2c61_A 133 KDFIQTGISTIDGTN--TLVRGQKLPIFSASGLPHNEIALQIARQA 176 (469)
T ss_dssp CSBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred ccccceeeEeeeeee--ccccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999987 45588899999999999999955444443
No 385
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.18 E-value=0.11 Score=58.76 Aligned_cols=44 Identities=27% Similarity=0.259 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH--h-hcCCcEEEEcCCCCCCh
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEV--Q-KLGGNAMLVDAEHAFDP 185 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~--~-~~~~~vv~id~E~~~~~ 185 (440)
...++.|+|+.|.||||||.++.... . .-+.+++|++.....+.
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~ 195 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence 36799999999999999988877532 2 23457899987665554
No 386
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.16 E-value=0.054 Score=49.66 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=32.7
Q ss_pred CEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 144 RIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 144 ~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
+++.|++ ..|+||||++.+++..+.+.+.+++++|...
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 4666665 5899999999999999998899999999875
No 387
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.15 E-value=0.08 Score=46.42 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~ 165 (440)
-+.|+|++|+|||||..+++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999555543
No 388
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.14 E-value=0.027 Score=50.31 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
..++.|.|++||||||++ +.++.. +..+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~-~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVA-ALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHC-----CCEEEcc
Confidence 458999999999999995 444332 4556654
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.11 E-value=0.03 Score=51.24 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
+|..+.|.|+|||||||+|-.++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999965554433
No 390
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.09 E-value=0.029 Score=48.76 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=17.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~ 165 (440)
.++.|.|++||||||+|-.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999655443
No 391
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.08 E-value=0.046 Score=52.05 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
+.-+.|+||||+|||++|..++..+ +...++++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 3467899999999999965554443 44677776543
No 392
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.07 E-value=0.035 Score=52.19 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
+.-+.|+|+||+|||++|..+.......+...++++....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 3568899999999999965554444444567888876644
No 393
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.02 E-value=0.048 Score=50.88 Aligned_cols=40 Identities=23% Similarity=0.428 Sum_probs=25.1
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhc----CCcEEEE
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL----GGNAMLV 177 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~----~~~vv~i 177 (440)
|-..+|.++.|.|++||||||++-.+...+... +..+++.
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 334689999999999999999966665555444 5566544
No 394
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.02 E-value=0.39 Score=49.28 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
..++.++|.|||||||++-+++..+-.....+..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 458999999999999998777766554444444443
No 395
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.02 E-value=0.14 Score=52.48 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=16.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li 164 (440)
.++|+|+||+||||| ++.+
T Consensus 25 ~V~lvG~~nvGKSTL-~n~l 43 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTI-FNRI 43 (456)
T ss_dssp EEEEECSSSSSHHHH-HHHH
T ss_pred EEEEECCCCCcHHHH-HHHH
Confidence 799999999999999 4444
No 396
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.00 E-value=0.11 Score=43.77 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li 164 (440)
-+.|+|++|+|||||..+++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999955544
No 397
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.99 E-value=0.037 Score=51.25 Aligned_cols=36 Identities=33% Similarity=0.330 Sum_probs=25.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-.++|.++.|.|++||||||+ .++++... +..+++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~-~~~l~~~l----g~~~~d~ 47 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTV-AKIIAKDF----GFTYLDT 47 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHH-HHHHHHHH----CCEEEEH
T ss_pred cccCCcEEEEECCCCCCHHHH-HHHHHHHc----CCceecC
Confidence 456889999999999999999 45555433 3445554
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.99 E-value=0.031 Score=50.76 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~ 165 (440)
.+.|.|+|||||||+|-.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999655543
No 399
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.97 E-value=0.064 Score=50.35 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=27.2
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCc-EEEE
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGN-AMLV 177 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~-vv~i 177 (440)
+.-.+|.++.|.|++||||||++-.+...+...+.. +++.
T Consensus 22 ~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 22 SNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp ----CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 344468899999999999999966666555555555 4443
No 400
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.96 E-value=0.19 Score=42.48 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.5
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 013567 146 VEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~ 165 (440)
+.|+|++|+|||||..+++.
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999555544
No 401
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.96 E-value=0.13 Score=43.44 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=16.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li 164 (440)
-+.|+|++|+|||||..+++
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999944444
No 402
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.93 E-value=0.056 Score=51.74 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 132 LDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 132 LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
|...+.|..++-..+.|+||||+|||.||..++..
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 55556454577778999999999999997755553
No 403
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.91 E-value=0.018 Score=55.90 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH-hhcCCcEEEEcC
Q 013567 146 VEIFGPESSGKTTLALHAIAEV-QKLGGNAMLVDA 179 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~~-~~~~~~vv~id~ 179 (440)
++|+|++|+||||| ++.+.+. ..+..+ +.+++
T Consensus 21 I~lvG~nG~GKSTL-l~~L~g~~~~~~~g-i~~~g 53 (301)
T 2qnr_A 21 LMVVGESGLGKSTL-INSLFLTDLYPERV-ISGAA 53 (301)
T ss_dssp EEEEEETTSSHHHH-HHHHHC--------------
T ss_pred EEEECCCCCCHHHH-HHHHhCCCccCCCC-cccCC
Confidence 38999999999999 7776654 444445 44443
No 404
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.88 E-value=0.031 Score=50.56 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=18.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
+.+.|.||+|+|||||+-.++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999996555443
No 405
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.86 E-value=0.033 Score=55.22 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.++.++.|+||+|+|||||+..++..+ +.-+|+..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~D 72 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSD 72 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccc
Confidence 456799999999999999987776533 34556654
No 406
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.85 E-value=0.19 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.++.|.||+|+|||||+..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 488999999999999988887665
No 407
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.81 E-value=0.16 Score=55.32 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
.+.-+.|+||||+|||+++..++..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 566789999999999999666665553
No 408
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.78 E-value=0.049 Score=51.21 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=34.0
Q ss_pred CCCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 142 KGRIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 142 ~G~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
.++++.|++ ..|+||||+|.+++..+. .+.+|++||....
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 467787765 599999999999999999 8999999998743
No 409
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.76 E-value=0.04 Score=50.19 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
.++.|+||||+||||+ +..+.-+.
T Consensus 24 ~~~~I~G~NgsGKSti-l~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL-LDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CeEEEEcCCCCCHHHH-HHHHHHHh
Confidence 4999999999999999 77665554
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.75 E-value=0.048 Score=50.36 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.+..+.|.|++||||||+|-.++..+ +..+++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-----CCceecH
Confidence 45689999999999999966555443 2455654
No 411
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.73 E-value=0.11 Score=46.84 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=17.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li 164 (440)
--+.|+|++|+|||||..+++
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999954444
No 412
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.72 E-value=0.053 Score=51.82 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=35.5
Q ss_pred CCCEEEEEc---CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 142 KGRIVEIFG---PESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 142 ~G~ii~I~G---~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
.++++.|++ ..|+||||++.+++..+.+.+.+|+.||....
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 466777776 89999999999999999988999999998754
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.69 E-value=0.042 Score=51.55 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.-++.|.||+||||||++-. ++... +..|++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~-la~~l----g~~~~d~g 41 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRG-LARAL----GARYLDTG 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH-HHHHH----TCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHh----CCCcccCC
Confidence 45899999999999999544 44333 34556543
No 414
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.66 E-value=0.046 Score=47.29 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~ 165 (440)
.+.|.|++||||||+|-.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999544443
No 415
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.65 E-value=0.087 Score=53.99 Aligned_cols=42 Identities=29% Similarity=0.237 Sum_probs=29.1
Q ss_pred CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 138 GGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 138 GGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.|..++.-+.|+||||+|||++|..++.. .......+++++.
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~-l~~~~~~~~~~~~ 99 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQE-LGSKVPFCPMVGS 99 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHH-HCTTSCEEEEEGG
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHH-hCCCceEEEEeHH
Confidence 46666677999999999999997655544 3333455555543
No 416
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.64 E-value=0.037 Score=49.72 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
.|.-+.|.|++|+||||+|+.++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 366799999999999999988876
No 417
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.64 E-value=0.081 Score=48.77 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGG 172 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~ 172 (440)
+|.++.|.|++||||||++-.+...+...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4889999999999999996555555544454
No 418
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.59 E-value=0.024 Score=53.27 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=38.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCCChhhhhhhcccccceeecCCCCHHHHHHHHHHHHhcCCcceE
Q 013567 146 VEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLI 225 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~~~~~a~~lGv~~~~l~i~~~~~~ee~l~~i~~l~~~~~~~lv 225 (440)
+.|+||||+|||+||..++... +...++++....... ..|... .....++..+. ...+.++
T Consensus 47 vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~----~~~~~~--------~~~~~~~~~a~----~~~~~vl 107 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIEM----FVGLGA--------SRVRDLFETAK----KQAPSII 107 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTTS----CSSSCS--------SSSSTTHHHHH----HSCSCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHHh----hcchHH--------HHHHHHHHHHH----hcCCeEE
Confidence 7899999999999965555443 223344433221110 011100 11112222222 2357899
Q ss_pred EEecccccCC
Q 013567 226 CVDSVSALTP 235 (440)
Q Consensus 226 VIDsl~~l~~ 235 (440)
+||.+..+.+
T Consensus 108 ~iDEid~l~~ 117 (268)
T 2r62_A 108 FIDEIDAIGK 117 (268)
T ss_dssp EESCGGGTTC
T ss_pred EEeChhhhcc
Confidence 9999988864
No 419
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.58 E-value=0.044 Score=49.88 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.+.++.|.|++||||||+ .+.+.. . +..+++.
T Consensus 3 ~~~~I~i~G~~GSGKST~-~~~L~~-l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTV-ANAFAD-L----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHH-HHHHHH-T----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHH-HHHHHH-c----CCEEEEc
Confidence 356899999999999999 455544 2 4456654
No 420
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.54 E-value=0.043 Score=56.46 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=35.4
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
-+.+.||+..+|.++ =+-+|+-..|+|++|+|||+|+.+++...
T Consensus 132 ~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 132 DEFIQTGISAIDHLN--TLVRGQKLPVFSGSGLPHKELAAQIARQA 175 (465)
T ss_dssp CCBCBCSCHHHHTTS--CCBTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred ccccccCceEEeccc--ccccCCEEEEeCCCCcChHHHHHHHHHHH
Confidence 346789999999987 45578889999999999999965544443
No 421
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.51 E-value=0.15 Score=51.77 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=30.0
Q ss_pred CCCEEEEEcCCCCcHHHHH-HHHHHHHhhcCCcEEEEcCC
Q 013567 142 KGRIVEIFGPESSGKTTLA-LHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLa-L~li~~~~~~~~~vv~id~E 180 (440)
+|+.+.+.||+|||||..+ +.++..+...+..++++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt 40 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPT 40 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcH
Confidence 4789999999999999986 44554666677788888644
No 422
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.50 E-value=0.041 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.++|+|++|+||||| ++.+.+.
T Consensus 7 kv~lvG~~g~GKSTL-l~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNL-LSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHH-HHHHHHS
T ss_pred EEEEECcCCCCHHHH-HHHHhcC
Confidence 478999999999999 6666654
No 423
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.49 E-value=0.083 Score=55.92 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
..+++.+.|.+|.||||++.+++..+++.|.+++++|+..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4679999999999999999999999999999999999875
No 424
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.48 E-value=0.036 Score=56.93 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCC-cEEEEcCC
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGG-NAMLVDAE 180 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~-~vv~id~E 180 (440)
.+.|.|++|+||||++..++..+...+. .++.+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 9999999999999998887777776665 45555443
No 425
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.46 E-value=0.037 Score=59.00 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=29.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCC-cEEEEcCC
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEVQKLGG-NAMLVDAE 180 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~-~vv~id~E 180 (440)
+..|+.+.|+||||+||||| .+.+++...+.. +.+++...
T Consensus 57 i~~g~~vll~Gp~GtGKTtl-ar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSML-GQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHH-HHHHHHTSCCSSCEEEEEECC
T ss_pred ccCCCEEEEEeCCCCCHHHH-HHHHhccCCcccCCeEEEeCC
Confidence 44568999999999999999 667777665443 55555443
No 426
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.39 E-value=0.045 Score=54.27 Aligned_cols=32 Identities=28% Similarity=0.573 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.++.|.||+||||||||..++..+ ++.+|+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-----CCceeccc
Confidence 489999999999999987776654 24556654
No 427
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.36 E-value=0.08 Score=47.87 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
..+.|+|++|+|||||+.+++...... ..+..++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 378999999999999977777665433 5566666543
No 428
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.36 E-value=0.052 Score=49.92 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~ 166 (440)
++.|.|+|||||||+|-.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999996555443
No 429
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.31 E-value=0.095 Score=48.92 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=32.3
Q ss_pred CEEEE-EcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 144 RIVEI-FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 144 ~ii~I-~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
.++.| .+..|+||||++.+++..+.+.+.+|+++|...
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34555 567899999999999999998899999999875
No 430
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.21 E-value=0.78 Score=43.24 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=68.8
Q ss_pred CEEEEEcC-CCCcHHHHHHHHHHHHhhcCCcEEEEcC----C--CCCChh-hhhhhcccc-cceeecC-C----------
Q 013567 144 RIVEIFGP-ESSGKTTLALHAIAEVQKLGGNAMLVDA----E--HAFDPS-YSKALGVDV-ENLIVCQ-P---------- 203 (440)
Q Consensus 144 ~ii~I~G~-~GsGKTTLaL~li~~~~~~~~~vv~id~----E--~~~~~~-~a~~lGv~~-~~l~i~~-~---------- 203 (440)
..+.|+|. +|+|||++++.++..+.+.+.++.||-. . ...+.. ..+..|... .+.+.+. +
T Consensus 27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~~ 106 (251)
T 3fgn_A 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEHA 106 (251)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHHHHHHc
Confidence 45777775 7999999999999999999999999862 1 112222 233345431 2333322 2
Q ss_pred ----CCHHHHHHHHHHHHhcCCcceEEEecccccCCchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecc
Q 013567 204 ----DNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQI 279 (440)
Q Consensus 204 ----~~~ee~l~~i~~l~~~~~~~lvVIDsl~~l~~~~el~~~~g~~q~~~~ar~l~~~l~~L~~lak~~~~tVI~inhl 279 (440)
...+.+.+.++++ ....|+++||....+... +..+ +. ....+++..+.+||++...
T Consensus 107 ~~~~~~~~~i~~~~~~l--~~~~D~vlIEGagGl~~p--l~~~-~~---------------~~adla~~l~~pVILV~~~ 166 (251)
T 3fgn_A 107 GMALPARDQIVRLIADL--DRPGRLTLVEGAGGLLVE--LAEP-GV---------------TLRDVAVDVAAAALVVVTA 166 (251)
T ss_dssp TCCCCCHHHHHHHHHTT--CCTTCEEEEECSSSTTCE--EETT-TE---------------EHHHHHHHTTCEEEEEECS
T ss_pred CCCCCCHHHHHHHHHHH--HhcCCEEEEECCCCCcCC--cCcc-cc---------------hHHHHHHHcCCCEEEEEcC
Confidence 1233444444433 346789999998877631 1110 00 0123456678999998765
Q ss_pred c
Q 013567 280 R 280 (440)
Q Consensus 280 ~ 280 (440)
.
T Consensus 167 ~ 167 (251)
T 3fgn_A 167 D 167 (251)
T ss_dssp S
T ss_pred C
Confidence 4
No 431
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.21 E-value=0.073 Score=49.54 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E 180 (440)
.+|.++.|.|++||||||++-.+...+.. .+..++++.-|
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre 59 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE 59 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC
Confidence 36889999999999999996665555555 55566663444
No 432
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.20 E-value=0.1 Score=45.22 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=16.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li 164 (440)
-+.|+|++|+|||||..+++
T Consensus 20 ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999944444
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.09 E-value=0.058 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
.+.|.|+|||||||+|-.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999965555433
No 434
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.02 E-value=0.17 Score=44.72 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=16.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li 164 (440)
-+.|+|++|+|||||..+++
T Consensus 16 ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999944443
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.98 E-value=0.066 Score=47.87 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
++.|.|++||||||++ +.++... +..+++..
T Consensus 4 ~i~i~G~~GsGKst~~-~~la~~l----g~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA-RRVAAAL----GVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHH----TCCEEEHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhc----CCceeccc
Confidence 8999999999999995 4444433 24455543
No 436
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.91 E-value=0.14 Score=53.96 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=40.0
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
.+.+.||+..+|.++ =+-+|+-..|+|++|+|||+|+.+++.. .. ..-++|.-
T Consensus 213 ~epl~TGirvID~l~--PigrGqr~~Ifgg~g~GKT~L~~~ia~~-~~-~~v~V~~~ 265 (600)
T 3vr4_A 213 DVPMITGQRVIDTFF--PVTKGGAAAVPGPFGAGKTVVQHQIAKW-SD-VDLVVYVG 265 (600)
T ss_dssp CSBCCCCCHHHHHHS--CCBTTCEEEEECCTTSCHHHHHHHHHHH-SS-CSEEEEEE
T ss_pred CceecccchhhhccC--CccCCCEEeeecCCCccHHHHHHHHHhc-cC-CCEEEEEE
Confidence 356789999999987 4568999999999999999996655443 22 23456543
No 437
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.90 E-value=0.083 Score=52.40 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
++...+.|+||||+|||++|..++..+ +...+.++..
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~ 106 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDAT 106 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecch
Confidence 345578999999999999965554433 4566666643
No 438
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.88 E-value=0.048 Score=47.61 Aligned_cols=24 Identities=42% Similarity=0.592 Sum_probs=19.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
+|.-+.|+|+||+||||| ++.+.+
T Consensus 3 ~~~ki~ivG~~g~GKStL-l~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSL-LNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHH-HHHHHT
T ss_pred CCCEEEEECCCCCCHHHH-HHHHhC
Confidence 567899999999999999 555543
No 439
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.86 E-value=0.061 Score=52.65 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
..++.|.||+|+|||||+..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999988876553
No 440
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.84 E-value=0.087 Score=53.40 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
..-+.|+|++|+|||++...++..+...+..++.+|...
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkg 91 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG 91 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 347899999999999997777888888888899998664
No 441
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.82 E-value=0.1 Score=47.63 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEE
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLV 177 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~i 177 (440)
|.++.|-|..||||||++ +.+...+..+..+++.
T Consensus 2 ~kFI~~EG~dGsGKsTq~-~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVI-NEVYHRLVKDYDVIMT 35 (205)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHHHHHTTTSCEEEE
T ss_pred CCEEEEECCCCCcHHHHH-HHHHHHHHCCCCEEEe
Confidence 568999999999999995 5555544455566554
No 442
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.79 E-value=0.059 Score=53.03 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.++.|+||+|||||||+..++..+ +..+++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-----~~~iis~ 36 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-----PCELISV 36 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-----CCcEEec
Confidence 489999999999999987776543 3455554
No 443
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.76 E-value=0.11 Score=48.78 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCEEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCCC
Q 013567 143 GRIVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF 183 (440)
Q Consensus 143 G~ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~~ 183 (440)
+.++.|++ ..|+||||+|.+++..+.+.+.+|+++|.....
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 55777665 589999999999999999889999999987543
No 444
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.67 E-value=0.096 Score=51.72 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
++.-+.|+||||+|||++|..++..+ +...+.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 45678999999999999965554443 344555543
No 445
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.64 E-value=0.28 Score=43.01 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=16.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li 164 (440)
--+.|+|++|+|||||..+++
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999954443
No 446
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.63 E-value=0.062 Score=51.37 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=23.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
.++.|.|+|||||||++-.+.... .+..+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC----CCcEEecc
Confidence 478999999999999976655422 24566654
No 447
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.63 E-value=0.53 Score=40.86 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=15.9
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHA 163 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~l 163 (440)
-+.|+|++|+|||||.-++
T Consensus 25 ~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999994443
No 448
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.58 E-value=0.12 Score=47.01 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=31.0
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 145 IVEI-FGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 145 ii~I-~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
++.| .+..|+||||++.+++..+.+.+ +++.+|....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence 3444 56799999999999999999888 9999998753
No 449
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.53 E-value=0.073 Score=52.34 Aligned_cols=21 Identities=48% Similarity=0.624 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~ 165 (440)
.+++|+||||+||||+ +..+.
T Consensus 24 ~~~~i~G~NGsGKS~l-leAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSL-LDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHH-HHHHH
Confidence 4999999999999999 66543
No 450
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.39 E-value=0.13 Score=55.15 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.+|.++.|.|.+||||||++-.+...+...+..++.+|.+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 3688999999999999999766666555556677777643
No 451
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=92.38 E-value=0.045 Score=60.57 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=25.2
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 139 GLPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 139 Gi~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
-||+|++++|+|.+||||||||...+..
T Consensus 32 ~iP~~~l~viTGvSGSGKSSLafdtl~a 59 (842)
T 2vf7_A 32 KVPRDALVVFTGVSGSGKSSLAFGTLYA 59 (842)
T ss_dssp EEESSSEEEEESSTTSSHHHHHTTTHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999987764
No 452
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.33 E-value=0.087 Score=47.69 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
...+++|+|++||||||++-. +.... ++.++|.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~-L~~~l----g~~vid~ 43 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEI-LKNKY----GAHVVNV 43 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHH-HHHHH----CCEEEEH
T ss_pred cceEEEEECCCCCCHHHHHHH-HHHhc----CCEEEEC
Confidence 346899999999999999544 43332 3455654
No 453
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.32 E-value=0.16 Score=46.83 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH-hhcC----CcEEEEcC
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEV-QKLG----GNAMLVDA 179 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~-~~~~----~~vv~id~ 179 (440)
.|+.+.+.||+||||||+....+... ...+ .++++...
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p 117 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQP 117 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEES
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEecc
Confidence 57899999999999998755555443 2222 25666654
No 454
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.30 E-value=0.066 Score=55.04 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=35.5
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
-+.+.||+..+|.++ =+-+|+-..|+|++|+|||+|+.+++..
T Consensus 128 ~e~l~TGiraID~l~--pigrGQr~~Ifgg~G~GKt~L~~~Ia~~ 170 (464)
T 3gqb_B 128 EQFIQTGISTIDVMN--TLVRGQKLPIFSGSGLPANEIAAQIARQ 170 (464)
T ss_dssp CCBCBCSCHHHHTTS--CCBTTCBCCEEEETTSCHHHHHHHHHHH
T ss_pred cccccCcceeeeccc--ccccCCEEEEecCCCCCchHHHHHHHHH
Confidence 457899999999987 4558899999999999999996555444
No 455
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.27 E-value=0.17 Score=49.63 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
-.++.+.|..|.||||++.+++..+++.|.+++.+|....
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4678888999999999999999999999999999998754
No 456
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.26 E-value=0.11 Score=47.10 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=25.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 144 RIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
..+.|+|++|+|||||+.+++...... ..+..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~ 72 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIA 72 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence 478899999999999988887765433 4444444
No 457
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.04 E-value=0.17 Score=45.80 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=30.2
Q ss_pred EEEEEc-CCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 145 IVEIFG-PESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 145 ii~I~G-~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
++.|++ ..|+||||++.+++..+.+.+.++++++.
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 456666 48999999999999999999999999873
No 458
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.03 E-value=0.081 Score=50.66 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li 164 (440)
..+++|+|++||||||+|-.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999965444
No 459
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.00 E-value=0.097 Score=52.17 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=20.1
Q ss_pred CCCCCE--EEEEcCCCCcHHHHHHHHHHHH
Q 013567 140 LPKGRI--VEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 140 i~~G~i--i~I~G~~GsGKTTLaL~li~~~ 167 (440)
+++|++ +.|.|++|+||||++ +.++..
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~-~~la~~ 47 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIA-EELCQI 47 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHH-HHHHHH
Confidence 445555 999999999999995 444443
No 460
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.99 E-value=0.11 Score=54.74 Aligned_cols=50 Identities=24% Similarity=0.263 Sum_probs=35.0
Q ss_pred HHHHHhcCCCC----CCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcCC
Q 013567 131 TLDLALGGGLP----KGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 131 ~LD~~LgGGi~----~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~E 180 (440)
.....+.-.+| .+.++.|.|.+||||||+|-.+...+...+..+.+++.+
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 34444443443 378999999999999999766665555556667788754
No 461
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=91.92 E-value=0.29 Score=49.98 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCCcHHH-HHHHHHHHHhhcCCcEEEEcCC
Q 013567 143 GRIVEIFGPESSGKTT-LALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 143 G~ii~I~G~~GsGKTT-LaL~li~~~~~~~~~vv~id~E 180 (440)
++++.+.+|+|||||+ +.+.++..+...+..++++...
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Pt 57 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPT 57 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCC
Confidence 6788999999999999 5677777777777788888643
No 462
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.79 E-value=0.11 Score=55.00 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=33.7
Q ss_pred HHHHhcCCC----CCCCEEEEEcCCCCcHHHHHHHHHHHHhhcC-CcEEEEcCC
Q 013567 132 LDLALGGGL----PKGRIVEIFGPESSGKTTLALHAIAEVQKLG-GNAMLVDAE 180 (440)
Q Consensus 132 LD~~LgGGi----~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~-~~vv~id~E 180 (440)
+.+.+.-.+ +.|.++.|.|.+||||||+|-.+...+...+ ..++++|++
T Consensus 381 Vsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 381 VVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp HHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 444443344 3477999999999999999766655554444 567788754
No 463
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=91.77 E-value=0.14 Score=53.77 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=39.8
Q ss_pred ccccccCcHHHHHHhcCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 122 VETFPSGCLTLDLALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 122 ~~~i~TGi~~LD~~LgGGi~~G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
.+.+.||+..+|.++ =+-+|+-..|+|++|+|||+|+.+++.. .. ..-++|.-
T Consensus 202 ~epl~TGirvID~l~--PigrGqr~~Ifg~~g~GKT~l~~~ia~~-~~-~~v~V~~~ 254 (578)
T 3gqb_A 202 NTPFLTGMRILDVLF--PVAMGGTAAIPGPFGSGKSVTQQSLAKW-SN-ADVVVYVG 254 (578)
T ss_dssp CSEECCSCHHHHTTS--CEETTCEEEECCCTTSCHHHHHHHHHHH-SS-CSEEEEEE
T ss_pred CCcccccchhhhhcc--cccCCCEEeeeCCCCccHHHHHHHHHhc-cC-CCEEEEEE
Confidence 456789999999987 4558999999999999999996655443 22 23455543
No 464
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.76 E-value=0.63 Score=40.49 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=17.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li 164 (440)
+.--+.|+|++|+|||||..+++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999944443
No 465
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.69 E-value=0.17 Score=53.98 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEH 181 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~ 181 (440)
+.++.|.||||+|||+++..++..+.+ .+..++.....+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn 234 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 234 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH
Confidence 458999999999999998888887776 556666655443
No 466
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.64 E-value=0.14 Score=47.36 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 141 PKGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
.+|.++.|.|++||||||++- .+....
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~-~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCN-ILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHH-HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH-HHHHHh
Confidence 478999999999999999954 444444
No 467
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=91.46 E-value=0.059 Score=54.88 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
++.|..++|+|+||+||||| ++.+.+.
T Consensus 154 lk~g~~VgLVG~~gAGKSTL-L~~Lsg~ 180 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSL-LAAMTRA 180 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHH-HHHHCSS
T ss_pred EcCCCEEEEECCCCCcHHHH-HHHHHcC
Confidence 66789999999999999999 7777665
No 468
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=91.35 E-value=0.053 Score=60.59 Aligned_cols=28 Identities=43% Similarity=0.659 Sum_probs=25.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
||++++++|+|.+|||||+||+..++.-
T Consensus 21 ip~~~l~v~tG~SGSGKSsLafdtl~ae 48 (916)
T 3pih_A 21 IPKNRLVVITGVSGSGKSSLAMDTIYAE 48 (916)
T ss_dssp EETTSEEEEEESTTSSSHHHHTTTHHHH
T ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999999888643
No 469
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=91.34 E-value=0.061 Score=60.17 Aligned_cols=26 Identities=38% Similarity=0.749 Sum_probs=24.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
||++++++|+|.+|||||+||+..++
T Consensus 41 iP~~~lvv~tG~SGSGKSSLafdtly 66 (972)
T 2r6f_A 41 IPRGKLVVLTGLSGSGKSSLAFDTIY 66 (972)
T ss_dssp EETTSEEEEEESTTSSHHHHHTTTHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999998886
No 470
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=91.33 E-value=0.06 Score=60.40 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=25.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
||++++++|+|.+|||||+||+..++.
T Consensus 43 iP~~~lvv~tG~SGSGKSSLafdtlya 69 (993)
T 2ygr_A 43 LPRDALIVFTGLSGSGKSSLAFDTIFA 69 (993)
T ss_dssp EESSSEEEEEESTTSSHHHHHTTTHHH
T ss_pred ccCCCEEEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999999998873
No 471
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.26 E-value=0.11 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=19.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
+|.++.|.|.+||||||++-.+..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999544433
No 472
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.05 E-value=0.13 Score=44.20 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=16.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~ 165 (440)
.+.|+|++|+||||| ++.+.
T Consensus 5 ~v~lvG~~gvGKStL-~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTI-FNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHh
Confidence 589999999999999 54444
No 473
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.98 E-value=0.5 Score=47.97 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=15.1
Q ss_pred EEEEEcCCCCcHHHHHH
Q 013567 145 IVEIFGPESSGKTTLAL 161 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL 161 (440)
.++|+|+||+|||||.-
T Consensus 5 ~V~ivG~~nvGKStL~n 21 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFN 21 (436)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999999943
No 474
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.82 E-value=0.2 Score=47.75 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=33.0
Q ss_pred CEEEEE-cCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCC
Q 013567 144 RIVEIF-GPESSGKTTLALHAIAEVQKLGGNAMLVDAEH 181 (440)
Q Consensus 144 ~ii~I~-G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~ 181 (440)
+++.|+ +..|+||||++.+++..+.+.+.+|+.||...
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 466666 46899999999999999999999999999875
No 475
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.80 E-value=0.28 Score=44.35 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEc
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVD 178 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id 178 (440)
++.|-|..||||||.+-.+...+...+..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999995555545555666666554
No 476
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.65 E-value=0.73 Score=40.59 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=17.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHA 163 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~l 163 (440)
.--+.|+|++|+|||||..++
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 446899999999999994443
No 477
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.59 E-value=0.5 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=18.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHA 163 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~l 163 (440)
+..|+.+.|.||+||||||+.-.+
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHH
Confidence 345789999999999999963333
No 478
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.49 E-value=0.49 Score=41.82 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=16.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li 164 (440)
--+.|+|++|+|||||..+++
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 368999999999999954443
No 479
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.45 E-value=0.13 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~ 165 (440)
.|.-+.|.|++|+||||+|+.++.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466799999999999999987664
No 480
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.37 E-value=0.12 Score=45.24 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=16.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~ 165 (440)
-+.|+|++|+||||| ++.+.
T Consensus 4 kv~ivG~~gvGKStL-l~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTL-LQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHH-HHHHh
Confidence 478999999999999 44443
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.31 E-value=0.13 Score=48.42 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHH
Q 013567 141 PKGRIVEIFGPESSGKTTLAL 161 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTLaL 161 (440)
.++.++.|.|++||||||++-
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~ 42 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVN 42 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHH
Confidence 467899999999999999943
No 482
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.26 E-value=0.17 Score=47.21 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 145 IVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
-.+|.|+|||||||+|-.++..+ +..++++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~-----g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF-----GIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-----TCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh-----CCCeeec
Confidence 46899999999999976665544 3445554
No 483
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=90.22 E-value=0.076 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=21.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 013567 140 LPKGRIVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 140 i~~G~ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
+.+| ++.|+|+||+||||| +..+..+
T Consensus 58 f~~g-~n~i~G~NGaGKS~l-leAl~~l 83 (517)
T 4ad8_A 58 LGGG-FCAFTGETGAGKSII-VDALGLL 83 (517)
T ss_dssp CCCS-EEEEEESHHHHHHHH-THHHHHH
T ss_pred cCCC-eEEEEcCCCCCHHHH-HHHHHHH
Confidence 4566 999999999999999 7777555
No 484
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.20 E-value=0.12 Score=50.18 Aligned_cols=34 Identities=12% Similarity=-0.029 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
|.-+.|+||||+|||+||..++ ... +.....+..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la-~~~--~~~~~~i~~ 79 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLA-KTM--DLDFHRIQF 79 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHH-HHT--TCCEEEEEC
T ss_pred CCeEEEECCCCCcHHHHHHHHH-HHh--CCCeEEEec
Confidence 3478999999999999965544 433 334555554
No 485
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.19 E-value=0.11 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
+..++|+|+||+||||| ++.+.+
T Consensus 8 ~~~VaIvG~~nvGKSTL-ln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTL-LNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHH-HHHHHT
T ss_pred CCEEEEECCCCCCHHHH-HHHHHC
Confidence 34899999999999999 555543
No 486
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.19 E-value=0.16 Score=45.87 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhhcCCcEEEEcC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDA 179 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~~~~~vv~id~ 179 (440)
+.++.|.|++||||||++- .+.... +..+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~-~l~~~~----g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAK-RVASEL----SMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHH-HHHHHT----TCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHH-HHHHhc----CCceecC
Confidence 3579999999999999954 443332 3445554
No 487
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.04 E-value=0.18 Score=55.66 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAEH 181 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E~ 181 (440)
+.++.|.||||+|||++...++..+.+ .+..++.....+
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn 414 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH
Confidence 568999999999999998888877765 566777665443
No 488
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.99 E-value=0.16 Score=49.73 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
|.-+.|.|++|+||||+|+.++..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 778999999999999998887763
No 489
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=89.97 E-value=0.16 Score=50.49 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 013567 144 RIVEIFGPESSGKTTLALHAIAE 166 (440)
Q Consensus 144 ~ii~I~G~~GsGKTTLaL~li~~ 166 (440)
.+++|+|+||+|||++ +..+.-
T Consensus 26 gl~vi~G~NGaGKT~i-leAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI-FEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHH-HHHHHH
Confidence 4999999999999999 666553
No 490
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.95 E-value=0.17 Score=44.05 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=16.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIA 165 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~ 165 (440)
.+.|+|++|+||||| ++.+.
T Consensus 9 ~i~lvG~~gvGKStL-~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTI-FNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHh
Confidence 689999999999999 44443
No 491
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.86 E-value=0.18 Score=42.70 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=16.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li 164 (440)
-+.|+|++|+|||||.-+++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999954444
No 492
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=89.61 E-value=0.3 Score=48.80 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=34.0
Q ss_pred CCCCEEEEE-cCCCCcHHHHHHHHHHHHh------hcCCcEEEEcCCC
Q 013567 141 PKGRIVEIF-GPESSGKTTLALHAIAEVQ------KLGGNAMLVDAEH 181 (440)
Q Consensus 141 ~~G~ii~I~-G~~GsGKTTLaL~li~~~~------~~~~~vv~id~E~ 181 (440)
..+.++.|+ |..|+||||++.+++..++ ..+.+|+++|...
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 346677777 5699999999999999887 4688999999874
No 493
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=89.57 E-value=0.18 Score=49.95 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=32.7
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhhcCCcEEEEcCCCC
Q 013567 145 IVEIF-GPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 182 (440)
Q Consensus 145 ii~I~-G~~GsGKTTLaL~li~~~~~~~~~vv~id~E~~ 182 (440)
++.|+ +..|+||||++.+++..+++.+.+|++||....
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q 41 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ 41 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 45555 579999999999999999999999999998754
No 494
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.53 E-value=0.19 Score=42.24 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=16.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li 164 (440)
-+.++|++|+|||||..+++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999954444
No 495
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.51 E-value=0.2 Score=43.84 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=17.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 013567 142 KGRIVEIFGPESSGKTTLALHAI 164 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li 164 (440)
+.--+.|+|++|+|||||..+++
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34478999999999999944443
No 496
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.51 E-value=0.13 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 013567 146 VEIFGPESSGKTTLALHAIAEVQK 169 (440)
Q Consensus 146 i~I~G~~GsGKTTLaL~li~~~~~ 169 (440)
++|+|+||+||||| ++.+.+...
T Consensus 34 I~lvG~sGaGKSTL-ln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTL-INSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHH-HHHHTTCCC
T ss_pred EEEECCCCCcHHHH-HHHHhCCCC
Confidence 59999999999999 788777654
No 497
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.48 E-value=0.34 Score=53.40 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHhh-cCCcEEEEcCC
Q 013567 143 GRIVEIFGPESSGKTTLALHAIAEVQK-LGGNAMLVDAE 180 (440)
Q Consensus 143 G~ii~I~G~~GsGKTTLaL~li~~~~~-~~~~vv~id~E 180 (440)
+.++.|.||||+|||++...++..+.. .+..++.....
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~t 409 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 409 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESS
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCc
Confidence 468999999999999998888887776 45566655443
No 498
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.45 E-value=0.24 Score=51.01 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHh
Q 013567 142 KGRIVEIFGPESSGKTTLALHAIAEVQ 168 (440)
Q Consensus 142 ~G~ii~I~G~~GsGKTTLaL~li~~~~ 168 (440)
...-+.|+||||+|||+++..++..+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 344678999999999999666655554
No 499
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=89.41 E-value=0.61 Score=49.77 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCcHHHH-HHHHHHHHhhcCCcEEEEcCC
Q 013567 141 PKGRIVEIFGPESSGKTTL-ALHAIAEVQKLGGNAMLVDAE 180 (440)
Q Consensus 141 ~~G~ii~I~G~~GsGKTTL-aL~li~~~~~~~~~vv~id~E 180 (440)
..|+.+.+.+|+|||||+. ++.++..+...+..++++...
T Consensus 184 ~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~Pt 224 (618)
T 2whx_A 184 RKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPT 224 (618)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcCh
Confidence 4688999999999999996 577887777767788888643
No 500
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.36 E-value=0.21 Score=43.49 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013567 145 IVEIFGPESSGKTTLALHAIAEV 167 (440)
Q Consensus 145 ii~I~G~~GsGKTTLaL~li~~~ 167 (440)
-+.|+|++|+||||| ++.+.+.
T Consensus 16 ki~vvG~~~~GKssL-~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTN-LKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHT
T ss_pred EEEEECCCCCCHHHH-HHHHHhh
Confidence 478999999999999 4777654
Done!