Query 013568
Match_columns 440
No_of_seqs 430 out of 2669
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 13:01:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 8.5E-26 2.9E-30 223.5 24.7 278 135-434 28-340 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.7E-25 5.8E-30 222.1 18.0 285 135-430 30-331 (451)
3 2gfp_A EMRD, multidrug resista 99.9 2.3E-23 7.9E-28 201.9 16.4 257 137-418 4-264 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 1.5E-21 5.1E-26 196.1 21.7 172 134-313 14-194 (491)
5 4gc0_A D-xylose-proton symport 99.8 2E-19 6.8E-24 180.5 20.6 283 140-433 19-356 (491)
6 2xut_A Proton/peptide symporte 99.8 2.4E-18 8E-23 174.2 18.1 175 134-313 13-196 (524)
7 2cfq_A Lactose permease; trans 99.8 1.4E-19 4.9E-24 178.1 8.3 285 132-431 6-301 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 2.5E-13 8.6E-18 134.2 13.9 177 132-316 251-434 (451)
9 2cfq_A Lactose permease; trans 99.4 1.1E-11 3.7E-16 121.7 15.9 180 132-320 219-405 (417)
10 3o7q_A L-fucose-proton symport 99.3 1.8E-11 6.2E-16 120.3 16.4 170 132-313 257-430 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.0 1.7E-09 5.9E-14 108.0 13.9 174 136-317 286-474 (491)
12 4gc0_A D-xylose-proton symport 98.9 1.9E-08 6.4E-13 100.3 15.2 163 150-321 295-469 (491)
13 2gfp_A EMRD, multidrug resista 98.8 1.1E-09 3.7E-14 105.4 3.6 160 133-303 199-364 (375)
14 2xut_A Proton/peptide symporte 98.4 2.3E-06 7.9E-11 85.9 12.7 141 169-313 336-500 (524)
15 2dw3_A Intrinsic membrane prot 28.6 98 0.0033 21.3 4.5 33 291-323 29-62 (77)
16 2g9p_A Antimicrobial peptide l 21.3 28 0.00096 17.6 0.5 15 408-422 2-16 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=8.5e-26 Score=223.49 Aligned_cols=278 Identities=14% Similarity=0.141 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (440)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~ 212 (440)
++.+++.++..++. +.....+|. +.+++|++..+.|++.+++.+++.+ ++++|+++|| +| ||+.++++.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr---~g--~r~~l~~~~~~~ 101 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK---LS--YKAGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH---SC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hc--chHHHHHHHHHH
Confidence 44556666777776 455555555 5555999999999999999999988 8999999999 45 888888888888
Q ss_pred HHHHHHH---HhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhh
Q 013568 213 ALSWSLM---ATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMV 289 (440)
Q Consensus 213 ~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~ 289 (440)
+++.+++ . ..++++.++++|++.|++.+...+...+++.|++|+++|+++.++.+.+.. +|.++++.+++++.
T Consensus 102 ~~~~~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 102 ALGAALFWPAA-EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS---FGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH---HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhcc-ccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 8887776 5 678899999999999999999999999999999999999999898888887 99999999999988
Q ss_pred -hccc-------------------------hHHHHHHHHHHHHHHHHhheee--ccccccCCCcCCCCCCCCCccchhhH
Q 013568 290 -DAYG-------------------------VRFVFGVTALLPLITSGVAVLV--KEQQVLGPSRRQNLPLGDPSFFESSK 341 (440)
Q Consensus 290 -~~~g-------------------------w~~~f~i~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~ 341 (440)
+..+ ||+.|++.+++.++..+..++. ||++..+++++ +.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------~~~ 245 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA------------KQG 245 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS------------STT
T ss_pred hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc------------ccc
Confidence 5544 9999988877766655544433 33332111111 111
Q ss_pred HHHHHHHHHhcCcchhhhHHHHHhhhcccccc-ceeeee-eeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCch
Q 013568 342 QNMFQLWEAVKQPNVFLPTLFVFLWQATPHSD-SAMFYF-TTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLR 419 (440)
Q Consensus 342 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r 419 (440)
...+..++.+++|.++..++..+++....... .....+ ..+.+|+++.+.+.+.....++.+++.++.+++.||+++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~ 325 (438)
T 3o7q_A 246 SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH 325 (438)
T ss_dssp SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 22345667789999888776655544422112 222333 4466799999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhh
Q 013568 420 KIFLANTIFGTALGM 434 (440)
Q Consensus 420 ~~l~~~~~~~~~~~~ 434 (440)
+.+..+.++.++..+
T Consensus 326 ~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 326 KVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998887776665544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.93 E-value=1.7e-25 Score=222.05 Aligned_cols=285 Identities=11% Similarity=0.004 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHH
Q 013568 135 NFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLG 212 (440)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~ 212 (440)
++.+++.++..++. ......++.+.++ + .+..+.|++.+++.+++.+ ++++|+++|| +| ||++++++.++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr---~g--~r~~l~~~~~~~ 102 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDR---SN--PRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH---SC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh---cC--chHHHHHHHHHH
Confidence 44555666666665 4555556655554 7 9999999999999999988 8899999999 45 888888998888
Q ss_pred HHHHHHHHhh----hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568 213 ALSWSLMATI----VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM 288 (440)
Q Consensus 213 ~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l 288 (440)
+++.++++ + .++++.++++|++.|++.+...+...+++.|++|+++|+++.++...+.. +|.+++|.+++++
T Consensus 103 ~~~~~~~~-~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~---~g~~~g~~~~~~l 178 (451)
T 1pw4_A 103 AAVMLFMG-FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN---VGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHH-HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH---HHHTSHHHHHHHH
T ss_pred HHHHHHHH-hhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 88888877 6 78889999999999999999999999999999999999999999988887 9999999999998
Q ss_pred hhccc-hHHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCC-C-cc--chhhHHHHHH--HHHHhcCcchhhhH
Q 013568 289 VDAYG-VRFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGD-P-SF--FESSKQNMFQ--LWEAVKQPNVFLPT 360 (440)
Q Consensus 289 ~~~~g-w~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~--~~~~l~~~~~~~~~ 360 (440)
.+.+| ||+.|++.+++.++..+ ..+++||++......+.++.... + .. .+..+...++ .++.+++|.++...
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIA 258 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHH
Confidence 88898 99999999988776655 45567776553221111110000 0 00 0000111111 34567888888776
Q ss_pred HHHHhhhccccc-cceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHHHH
Q 013568 361 LFVFLWQATPHS-DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNV--PLRKIFLANTIFGT 430 (440)
Q Consensus 361 l~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~--g~r~~l~~~~~~~~ 430 (440)
+..++....... ......+..+.+|+++.+.+++....+++.+++.++.+++.||+ ++|+.+..+.++..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 259 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 665554442211 22223344456899999999999999999999999999999999 99988877766655
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=2.3e-23 Score=201.93 Aligned_cols=257 Identities=12% Similarity=0.073 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHH
Q 013568 137 AVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGAL 214 (440)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~ 214 (440)
.+++..+..++. +.....+|.+. +++|.+..+.+++.++..+++.+ ++++|+++|| +| ||+.++.+.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr---~g--~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR---VG--RRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT---SC--CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hC--CchhHHHHHHHHHH
Confidence 345555666665 45555666654 55899999999999999999988 8899999999 45 77788888888888
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhccch
Q 013568 215 SWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAYGV 294 (440)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~gw 294 (440)
+.+.++ +.++.+.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.... +|.+++|.+++++.+.+||
T Consensus 78 ~~~~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 78 ATLVAV-TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGIL---VSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHH---HHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHH-HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHhccH
Confidence 877777 678889999999999999999999999999999999999999999988887 9999999999999998999
Q ss_pred HHHHHHHHHHHHHHHH-hheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHHhhhcccc-c
Q 013568 295 RFVFGVTALLPLITSG-VAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVFLWQATPH-S 372 (440)
Q Consensus 295 ~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~ 372 (440)
|+.|++.+++.++..+ ..+++||++..++++++. + +..++.+++|.++...+..++...... .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRL------------L---TSYKTLFGNSGFNCYLLMLIGGLAGIAAF 218 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCT------------T---TCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccH------------H---HHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 9999999888777766 455677765432211110 0 112234556666665554444333211 1
Q ss_pred cceeeeeeeccCCCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 013568 373 DSAMFYFTTNELGFTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPL 418 (440)
Q Consensus 373 ~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~ 418 (440)
......+..+.+|+++.+.+.+....+++.+++.++.+++.||+++
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333334578889999999999999999999999999999876
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.88 E-value=1.5e-21 Score=196.12 Aligned_cols=172 Identities=19% Similarity=0.181 Sum_probs=144.0
Q ss_pred cHHHHHHHHHHHHHh-hhHHHHHHHHHHHh-----cCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh
Q 013568 134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDD-----LHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV 206 (440)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~ 206 (440)
.++.+.+..+...+. ......++.|++++ +|++..+.+++.+++.++..+ ++++|+++||+ +| ||+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~g--~r~~~~ 89 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI--IG--ARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SC--HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cc--chHHHH
Confidence 455566666666665 46667888888887 999999999999999999888 88999999982 25 888888
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccc--cccchhhhHHhhhhhhhHHHHHHHH
Q 013568 207 LSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGES--QSVSGSLQSLCWGSSAFGGIVSSYF 284 (440)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~g~~ig~~i 284 (440)
.+.++..++.++++ ++++.+.++++|++.|++.+...+...+++.|++|+++ |+.+.++++.... +|.+++|.+
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~g~~~~~~~ 165 (491)
T 4aps_A 90 WGGVLIMLGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGIN---LGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHH---HHHHHHHHH
Confidence 88888888888777 78889999999999999999999999999999999988 5556666666666 999999999
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHhhe
Q 013568 285 SGSMVDAYGVRFVFGVTALLPLITSGVAV 313 (440)
Q Consensus 285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~ 313 (440)
++++.+..|||+.|++.++..++..+..+
T Consensus 166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877766655444
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.83 E-value=2e-19 Score=180.48 Aligned_cols=283 Identities=13% Similarity=0.094 Sum_probs=189.1
Q ss_pred HHHHHHHHh-hhHHHHHHHHHHHhcCC--------ChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568 140 MVYFVQGVL-GLARLAVNFYLKDDLHL--------DPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG 209 (440)
Q Consensus 140 ~~~~~~~~~-~~~~~~l~~~l~~~~g~--------s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~ 209 (440)
++.+..|++ +.+...++..- ++++. +..+.|++.+.+.++..+ .+++|+++|| +| ||+.++++.
T Consensus 19 lg~~~~Gyd~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr---~G--Rk~~l~~~~ 92 (491)
T 4gc0_A 19 LGGLLFGYDTAVISGTVESLN-TVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR---FG--RRDSLKIAA 92 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHH-HHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH---TC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--CHHHHHHHH
Confidence 445666666 45555555443 33432 235678888999999988 6788999999 56 888999998
Q ss_pred HHHHHHHHHHHh-----------------hhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhh
Q 013568 210 LLGALSWSLMAT-----------------IVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWG 272 (440)
Q Consensus 210 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 272 (440)
++..++.++.++ ++++.+.++++|++.|++.|...+....+++|+.|+++|++..++.+.+..
T Consensus 93 ~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~ 172 (491)
T 4gc0_A 93 VLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAII 172 (491)
T ss_dssp HHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhh
Confidence 888888777663 367889999999999999999999999999999999999999999888877
Q ss_pred hhhhHHHHHHHHHHHhhh--------ccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCC----CCC---Cccc
Q 013568 273 SSAFGGIVSSYFSGSMVD--------AYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLP----LGD---PSFF 337 (440)
Q Consensus 273 ~~~~g~~ig~~i~g~l~~--------~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----~~~---~~~~ 337 (440)
+|.++++.++..+.. ..+||+.+.+..+..++.++..+++||+|+....+.+.++ .++ +...
T Consensus 173 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~ 249 (491)
T 4gc0_A 173 ---FGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA 249 (491)
T ss_dssp ---HHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence 888888877776643 2458888888888877777788889998754221111100 000 0000
Q ss_pred -hh---hHHHHHH------HHHHhcCcchhhhHHHHHhhhccccccceeeee---eeccCCCChhhHHHHHHHHHHHHHH
Q 013568 338 -ES---SKQNMFQ------LWEAVKQPNVFLPTLFVFLWQATPHSDSAMFYF---TTNELGFTPEFLGRVKFVTSVASLL 404 (440)
Q Consensus 338 -~~---~~~~~~~------~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~g~s~~~~g~~~~~~~i~~~~ 404 (440)
+. .++.... .....+.++........++.+.. ......++ ..+..+.+...........++..++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (491)
T 4gc0_A 250 TQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFV--GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLT 327 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHh--hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHH
Confidence 00 0000000 01112233333333222222221 11111111 1245677777777777888899999
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013568 405 GVGLYNGFLKNVPLRKIFLANTIFGTALG 433 (440)
Q Consensus 405 g~~~~~~l~~r~g~r~~l~~~~~~~~~~~ 433 (440)
+.++++++.||+|||+.++.+..++.+..
T Consensus 328 ~~~~~~~l~dr~Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 328 FTVLAIMTVDKFGRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence 99999999999999999887766655443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.78 E-value=2.4e-18 Score=174.24 Aligned_cols=175 Identities=16% Similarity=0.167 Sum_probs=143.6
Q ss_pred cHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcC------CChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhh
Q 013568 134 DNFAVAMVYFVQGVL-GLARLAVNFYLKDDLH------LDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYL 205 (440)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g------~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l 205 (440)
.++.+.+..++..+. ......++.|+++++| ++..+.+++.+++.+++.+ .+++|+++||+ +| ||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~--~g--~r~~~ 88 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF--FG--KYNTI 88 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS--SC--SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc--chHHH
Confidence 444455555555555 5666788889988899 9999999999999999888 78999999992 27 77788
Q ss_pred hHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHH
Q 013568 206 VLSGLLGALSWSLMATIVE-SKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYF 284 (440)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i 284 (440)
.++.++..++.++++ +.+ +.+.+++.|++.|++.+...+...+++.|++|+++|+++.+.++......++|.++||.+
T Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 89 LWLSLIYCVGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777 566 888899999999999999999999999999999999887777444444455999999999
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHhhe
Q 013568 285 SGSMVDAYGVRFVFGVTALLPLITSGVAV 313 (440)
Q Consensus 285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~ 313 (440)
++++.+..||++.|++.+++.++..+..+
T Consensus 168 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp STHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999889999999998887766655443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.78 E-value=1.4e-19 Score=178.09 Aligned_cols=285 Identities=15% Similarity=0.164 Sum_probs=162.9
Q ss_pred CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHH
Q 013568 132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSG 209 (440)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~ 209 (440)
++.++.+...++..... +.....++.|+++++|++..+.|++.+++.+++.+ +|++|+++|| +| ||+.++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr---~G--rr~~l~~~~ 80 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK---LG--LRKYLLWII 80 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT---ST--TCCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--chHHHHHHH
Confidence 34566666655555544 56677889999888999999999999999999888 8999999999 56 666666655
Q ss_pred HHHHHHHHHHH--hhhchh-HHHHHHHHHHHHHHHhhhhhhhHHHHhhhcc--cccccchhhhHHhhhhhhhHHHHHHHH
Q 013568 210 LLGALSWSLMA--TIVESK-YSAALSILLGSLSVAFSDVVVDSMVVERARG--ESQSVSGSLQSLCWGSSAFGGIVSSYF 284 (440)
Q Consensus 210 ~~~~~~~~~~~--~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~ig~~i 284 (440)
.+..++...+. ...... ......+++.+++.+...+.......++.++ ++++...+....... +|..++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~g~~~~~~l 157 (417)
T 2cfq_A 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGC---VGWALGASI 157 (417)
T ss_dssp HHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTT---THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHH---HHHHHHHHH
Confidence 54433211111 011111 0112233333333332222222333333332 234444444444444 899999999
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHhheeeccccccCCCcCCCCCCCCCccchhhHHHHHHHHHHhcCcchhhhHHHHH
Q 013568 285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLVKEQQVLGPSRRQNLPLGDPSFFESSKQNMFQLWEAVKQPNVFLPTLFVF 364 (440)
Q Consensus 285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 364 (440)
++++.+ .+|++.|++.++..++..+..++.+|++.+..+++++.+.+++ +...++.++.+++|.++...+..+
T Consensus 158 ~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 230 (417)
T 2cfq_A 158 VGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS------AFSLKLALELFRQPKLWFLSLYVI 230 (417)
T ss_dssp HHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCC------CCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccc------cccHHHHHHHhcCCchhhHHHHHH
Confidence 999886 5899999987766544444444444433211100000000000 011234456778888776654433
Q ss_pred hhhcccc-ccceeeeeeeccCC---CChhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 013568 365 LWQATPH-SDSAMFYFTTNELG---FTPEFLGRVKFVTSVASLLGVGLYNGFLKNVPLRKIFLANTIFGTA 431 (440)
Q Consensus 365 ~~~~~~~-~~~~~~~~~~~~~g---~s~~~~g~~~~~~~i~~~~g~~~~~~l~~r~g~r~~l~~~~~~~~~ 431 (440)
....... ....+..++.+.++ .+....++......++.+++.++.+++.||+|+|+.+..+.++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~ 301 (417)
T 2cfq_A 231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 3221100 11112222223333 2244557777778888889999999999999999988876665554
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.48 E-value=2.5e-13 Score=134.17 Aligned_cols=177 Identities=14% Similarity=0.081 Sum_probs=138.1
Q ss_pred CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcC-CCCcchhhhHH
Q 013568 132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLF-GYRRRSYLVLS 208 (440)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~-G~~rr~~l~~~ 208 (440)
++.++.+.+..++.... .....++|.++++.+|.+..+.+++.++..++..+ .++.|+++||+ . | ||+.+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~--~~~--~~~~~~~~ 326 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV--FRG--NRGATGVF 326 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--STT--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcC--CchhHHHH
Confidence 44666666666666655 56777889999887899999999999888888777 78889999993 1 4 56666555
Q ss_pred HHHHH-HHHHHHHhhh--chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhh-HHHHHHHH
Q 013568 209 GLLGA-LSWSLMATIV--ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAF-GGIVSSYF 284 (440)
Q Consensus 209 ~~~~~-~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~ig~~i 284 (440)
..+.. ++.+.+. +. .+.+.+.++.++.|++.+...+....++.|..|+++|+++.++.+.... + |..++|.+
T Consensus 327 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~g~~~~~~~ 402 (451)
T 1pw4_A 327 FMTLVTIATIVYW-MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY---LGGSVAASAI 402 (451)
T ss_dssp HHHHHHHHHHHTT-SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH---HHHHHHHHHH
Confidence 55544 5544444 33 2556667777888888888888888999999999999999998887777 8 99999999
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHhheeec
Q 013568 285 SGSMVDAYGVRFVFGVTALLPLITSGVAVLVK 316 (440)
Q Consensus 285 ~g~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 316 (440)
.|++.+..||+..|++.+++.++..+..++++
T Consensus 403 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 403 VGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888877766554433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=1.1e-11 Score=121.66 Aligned_cols=180 Identities=11% Similarity=0.063 Sum_probs=123.6
Q ss_pred CccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCC---ChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhh
Q 013568 132 SPDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHL---DPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLV 206 (440)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~---s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~ 206 (440)
+++++...+..+..... .....++|.|+.+.++. +....++..++..+...+ .++.|+++|| +| ||+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr---~g--~~~~l~ 293 (417)
T 2cfq_A 219 QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR---IG--GKNALL 293 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC--HHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH---hc--HHHHHH
Confidence 34455444443333322 34445678888775543 234456666666666555 6788999999 45 666776
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhh-hHHhhhhhhhHHHHHHHHH
Q 013568 207 LSGLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSL-QSLCWGSSAFGGIVSSYFS 285 (440)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~g~~ig~~i~ 285 (440)
.+.++.+++.+.++ +.++.+.+++..++.+++.+...+....++.|.+|++.|+++.++ ++.... +|.+++|.++
T Consensus 294 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~---lg~~~gp~l~ 369 (417)
T 2cfq_A 294 LAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ---LAMIFMSVLA 369 (417)
T ss_dssp HHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHH---HHHHHHTHHH
T ss_pred HHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh---HHHHHhhhhH
Confidence 77666666655555 455666666666777777776666778899999999999887776 355555 9999999999
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHh-heeeccccc
Q 013568 286 GSMVDAYGVRFVFGVTALLPLITSGV-AVLVKEQQV 320 (440)
Q Consensus 286 g~l~~~~gw~~~f~i~~~~~~~~~~~-~~~~~e~~~ 320 (440)
|++.+..|+...|.+.+++.+++.+. .++.+|+++
T Consensus 370 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 370 GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999889999999988887777664 444555443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.34 E-value=1.8e-11 Score=120.31 Aligned_cols=170 Identities=12% Similarity=0.003 Sum_probs=126.5
Q ss_pred CccHHHHHHHHHHHHHh-hhHHHHHHHH-HHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHH
Q 013568 132 SPDNFAVAMVYFVQGVL-GLARLAVNFY-LKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLS 208 (440)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~-l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~ 208 (440)
++.++...+..++.... .....+++.| +++.+|.+..+.+++.++..++..+ .++.|+++||+ | ||+.+..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~---~--~~~~~~~~ 331 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF---A--PHKVLAAY 331 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---C--HHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--chHHHHHH
Confidence 44566555555555444 5666788999 8887899999999999888888777 78889999994 4 67777777
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHh
Q 013568 209 GLLGALSWSLMATIVESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSM 288 (440)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l 288 (440)
.++..++.+++. ..++... +++.++.|++.+...+...++..|..|++ ++.+.++.. ... +|..++|.+.|++
T Consensus 332 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~---~g~~~~~~~~g~l 404 (438)
T 3o7q_A 332 ALIAMALCLISA-FAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI---IGGGIVTPVMGFV 404 (438)
T ss_dssp HHHHHHHHHHHH-HCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH---HHHHHHHHHHHHH
Confidence 777766666555 4455444 34447888888888888999989998876 666666554 333 8999999999999
Q ss_pred hhccc-hHHHHHHHHHHHHHHHHhhe
Q 013568 289 VDAYG-VRFVFGVTALLPLITSGVAV 313 (440)
Q Consensus 289 ~~~~g-w~~~f~i~~~~~~~~~~~~~ 313 (440)
.+..| ++..|++.+++.++.++..+
T Consensus 405 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 405 SDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999887666555444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.04 E-value=1.7e-09 Score=107.95 Aligned_cols=174 Identities=14% Similarity=0.065 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhh----hHHH
Q 013568 136 FAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYL----VLSG 209 (440)
Q Consensus 136 ~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l----~~~~ 209 (440)
+.+.+..+..... ......++.+.++.++.+....+++.+...+...+ .++.|+++||+ | ||+... ..+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~---~-~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW---K-KNQPSSPTKFAVGL 361 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT---T-TC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH---h-ccCCCchHHHHHHH
Confidence 3333333333333 45556778888887788767777776666666666 78889999994 5 443222 1454
Q ss_pred HHHHHHHHHHHhhh--------chhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHH
Q 013568 210 LLGALSWSLMATIV--------ESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVS 281 (440)
Q Consensus 210 ~~~~~~~~~~~~~~--------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig 281 (440)
++..++.+++.... .+....++..++.|++.+...+....++.|..|++.|+.+.++.+.... +|..++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~---~g~~i~ 438 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS---VGSALN 438 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence 55555544443111 2555667778889999998888999999999999999999999888777 999999
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHhhe-eecc
Q 013568 282 SYFSGSMVDAYGVRFVFGVTALLPLITSGVAV-LVKE 317 (440)
Q Consensus 282 ~~i~g~l~~~~gw~~~f~i~~~~~~~~~~~~~-~~~e 317 (440)
+.+.+++.+ .++.+.|++.+++.++..+..+ +.++
T Consensus 439 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 439 AQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988765 4677788887777766655433 4343
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.90 E-value=1.9e-08 Score=100.32 Aligned_cols=163 Identities=14% Similarity=0.053 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHHHHHHHHHHHHhhh---ch
Q 013568 150 LARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGLLGALSWSLMATIV---ES 225 (440)
Q Consensus 150 ~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~~~~~~~~~~~~~~---~~ 225 (440)
....+.+.+.++ .+.+.........+..+...+ .++.+++.|| +| ||+.++.+.....++.+.++... .+
T Consensus 295 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr---~G--rr~~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (491)
T 4gc0_A 295 VVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDK---FG--RKPLQIIGALGMAIGMFSLGTAFYTQAP 368 (491)
T ss_dssp HHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC--SHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHh---hc--CcchhccchHHHHHHHHHHHHHHhcccc
Confidence 334344444444 688877776665555565555 6788999999 45 77777776666666555443221 11
Q ss_pred hHHHHHHHHHHHHHHH-hhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhh------ccchHHHH
Q 013568 226 KYSAALSILLGSLSVA-FSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVD------AYGVRFVF 298 (440)
Q Consensus 226 ~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~------~~gw~~~f 298 (440)
....++..++...+.+ ...+..+.+.+|++|.+.|+++.++...... +|.++++.+.+.+.+ ..++.+.|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~---~~~~i~~~~~p~l~~~~~~~~~~~~~~~~ 445 (491)
T 4gc0_A 369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW---LANYFVSWTFPMMDKNSWLVAHFHNGFSY 445 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHH---HHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2222222222222222 2345677899999999999998888776666 888888877766543 34567788
Q ss_pred HHHHHHHHHHHH-hheeecccccc
Q 013568 299 GVTALLPLITSG-VAVLVKEQQVL 321 (440)
Q Consensus 299 ~i~~~~~~~~~~-~~~~~~e~~~~ 321 (440)
++.++++++..+ .++++||++..
T Consensus 446 ~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 446 WIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHheecCCCCC
Confidence 888888777766 56789998754
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.84 E-value=1.1e-09 Score=105.41 Aligned_cols=160 Identities=9% Similarity=-0.062 Sum_probs=115.1
Q ss_pred ccHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCChhhhHHHHHhhhhhHHH-HhhhhhhccccCcCCCCcchhhhHHHH
Q 013568 133 PDNFAVAMVYFVQGVL-GLARLAVNFYLKDDLHLDPAETAVISGFSSLPWLI-KPLYGFISDSLPLFGYRRRSYLVLSGL 210 (440)
Q Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~g~l~Dr~~~~G~~rr~~l~~~~~ 210 (440)
++++...+..+..... .....++|.++++.+|.+..+.+++.+...++..+ .++.+++.||+ | + .+..+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~---~--~--~~~~~~~ 271 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF---S--T--LMWQSVI 271 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH---H--H--HHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--H--HHHHHHH
Confidence 3455555555555554 56667788888887899999999998888888777 77889999983 3 3 2333322
Q ss_pred H-HHHHHH--HHHhh-hchhHHHHHHHHHHHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHH
Q 013568 211 L-GALSWS--LMATI-VESKYSAALSILLGSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSG 286 (440)
Q Consensus 211 ~-~~~~~~--~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g 286 (440)
. ...+.. ..... .++.+.+.+..++.|++.+...+....++.|..| ++|+++.++.+.... +|..++|.+.|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~---~g~~~~~~~~g 347 (375)
T 2gfp_A 272 CCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQN---IGSGVLASLSA 347 (375)
T ss_dssp HHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHH---HHHHCCSTTCT
T ss_pred HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHH---HHHHHHHHHHH
Confidence 2 222211 11111 2355556677788899999989999999999998 789988888887766 99999999999
Q ss_pred HhhhccchHHHHHHHHH
Q 013568 287 SMVDAYGVRFVFGVTAL 303 (440)
Q Consensus 287 ~l~~~~gw~~~f~i~~~ 303 (440)
.+.+..+|...+++.++
T Consensus 348 ~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 348 MLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcccHHHHHHHH
Confidence 99888788888776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.37 E-value=2.3e-06 Score=85.88 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=91.4
Q ss_pred hhHHHHHhhhhhHHH-Hhhhhhhc-cccCcCCCCc---chhhhHHHHHHHHHHHHHHhhh--------chhHHHHHHHHH
Q 013568 169 ETAVISGFSSLPWLI-KPLYGFIS-DSLPLFGYRR---RSYLVLSGLLGALSWSLMATIV--------ESKYSAALSILL 235 (440)
Q Consensus 169 ~~g~~~s~~~l~~~~-~~~~g~l~-Dr~~~~G~~r---r~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l 235 (440)
..+++.....++..+ .++.+.+. ++..+.| +| +..+.++.++.+++.++++... .+.+.+++..++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMG-VKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYAL 414 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 355555555555444 55666553 2211122 11 2344556566666655554221 255566777889
Q ss_pred HHHHHHhhhhhhhHHHHhhhcccccccchhhhHHhhhhhhhHHHHHHHHHHHhhhcc--ch---------HHHHHHHHHH
Q 013568 236 GSLSVAFSDVVVDSMVVERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSMVDAY--GV---------RFVFGVTALL 304 (440)
Q Consensus 236 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ig~~i~g~l~~~~--gw---------~~~f~i~~~~ 304 (440)
.|++.+...+....++.|..|++.|++++++.+.... +|.++||.+.|.+.+.. +| +..|++.+++
T Consensus 415 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~---~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (524)
T 2xut_A 415 LTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT---VGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGF 491 (524)
T ss_dssp HHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHH---HHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHH---HHHHHHHHHHHHhcccccccccccccccccccHHHHHHHH
Confidence 9999999999999999999999999999999988877 99999999999987642 23 3347777766
Q ss_pred HHHHHHhhe
Q 013568 305 PLITSGVAV 313 (440)
Q Consensus 305 ~~~~~~~~~ 313 (440)
.++..++.+
T Consensus 492 ~~~~~~~~~ 500 (524)
T 2xut_A 492 AILAAIVFA 500 (524)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 666655444
No 15
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=28.60 E-value=98 Score=21.26 Aligned_cols=33 Identities=18% Similarity=-0.022 Sum_probs=18.6
Q ss_pred ccchHHHHHHHHHHHHHHHH-hheeeccccccCC
Q 013568 291 AYGVRFVFGVTALLPLITSG-VAVLVKEQQVLGP 323 (440)
Q Consensus 291 ~~gw~~~f~i~~~~~~~~~~-~~~~~~e~~~~~~ 323 (440)
.-||-.+|.+...+.++.+- +-.++||+.+..+
T Consensus 29 GAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 29 GAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 34566666665554444333 4568898765433
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=21.34 E-value=28 Score=17.64 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.2
Q ss_pred HHHHhhccCCchhHH
Q 013568 408 LYNGFLKNVPLRKIF 422 (440)
Q Consensus 408 ~~~~l~~r~g~r~~l 422 (440)
++|.+.+++||+.+-
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 467888999987653
Done!