Your job contains 1 sequence.
>013569
MEMPQYDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRD
FMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSRGDDSDNRDSS
LGDTELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPL
ASYLDVFGDLVKLKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRF
SDLGGNSLTHGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEF
MMGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPP
AKRKRIAPLSDGGSTLIKQVAHISTMVGPHVTAAAAEAAVAALCNESSCPREIFDGDEDY
LANGLSSPTMVSDPERLIIL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013569
(440 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043263 - symbol:SWI3A "SWITCH/sucrose nonferm... 618 5.8e-103 2
TAIR|locus:2051028 - symbol:SWI3B "switch subunit 3" spec... 244 3.3e-34 3
POMBASE|SPAC23H3.10 - symbol:ssr2 "SWI/SNF and RSC comple... 249 1.6e-26 2
DICTYBASE|DDB_G0277033 - symbol:swi3 "SWIRM domain-contai... 258 2.2e-25 2
POMBASE|SPAC17G6.10 - symbol:ssr1 "SWI/SNF and RSC comple... 234 2.9e-23 2
ASPGD|ASPL0000005061 - symbol:AN6705 species:162425 "Emer... 243 7.5e-23 2
SGD|S000001933 - symbol:RSC8 "Component of the RSC chroma... 280 1.8e-22 1
CGD|CAL0002007 - symbol:orf19.4488 species:5476 "Candida ... 265 4.0e-20 2
ZFIN|ZDB-GENE-080514-3 - symbol:smarcc1a "SWI/SNF related... 241 9.5e-19 3
MGI|MGI:1203524 - symbol:Smarcc1 "SWI/SNF related, matrix... 233 9.7e-19 3
ZFIN|ZDB-GENE-060503-273 - symbol:smarcc1b "SWI/SNF relat... 236 3.1e-18 3
TAIR|locus:2036942 - symbol:SWI3C "SWITCH/sucrose nonferm... 242 4.3e-18 2
UNIPROTKB|F1PVA9 - symbol:SMARCC2 "Uncharacterized protei... 237 4.9e-18 3
UNIPROTKB|G3N0H4 - symbol:SMARCC1 "Uncharacterized protei... 233 4.9e-18 3
UNIPROTKB|F1N4N6 - symbol:SMARCC2 "Uncharacterized protei... 237 4.9e-18 3
UNIPROTKB|F1MYU1 - symbol:SMARCC1 "Uncharacterized protei... 233 5.5e-18 3
UNIPROTKB|F1P1A8 - symbol:F1P1A8 "Uncharacterized protein... 234 5.8e-18 3
RGD|1304850 - symbol:Smarcc1 "SWI/SNF related, matrix ass... 233 6.0e-18 3
UNIPROTKB|F1SM00 - symbol:LOC100621845 "Uncharacterized p... 237 6.4e-18 3
UNIPROTKB|I3LRY4 - symbol:I3LRY4 "Uncharacterized protein... 237 6.7e-18 2
MGI|MGI:1915344 - symbol:Smarcc2 "SWI/SNF related, matrix... 237 7.5e-18 3
UNIPROTKB|Q8TAQ2 - symbol:SMARCC2 "SWI/SNF complex subuni... 237 7.5e-18 3
RGD|1597704 - symbol:Smarcc2 "SWI/SNF related, matrix ass... 236 7.8e-18 3
UNIPROTKB|F8VXC8 - symbol:SMARCC2 "SWI/SNF complex subuni... 237 8.3e-18 3
UNIPROTKB|Q92922 - symbol:SMARCC1 "SWI/SNF complex subuni... 233 1.0e-17 3
UNIPROTKB|E2REF0 - symbol:SMARCC1 "Uncharacterized protei... 233 1.0e-17 3
UNIPROTKB|G5EF87 - symbol:swsn-1 "SWI3-like protein" spec... 216 2.2e-17 3
WB|WBGene00004203 - symbol:swsn-1 species:6239 "Caenorhab... 216 2.2e-17 3
UNIPROTKB|G4MV88 - symbol:MGG_01720 "Transcription regula... 229 2.4e-17 2
FB|FBgn0002783 - symbol:mor "moira" species:7227 "Drosoph... 228 2.9e-17 3
SGD|S000003712 - symbol:SWI3 "Subunit of the SWI/SNF chro... 210 4.6e-17 2
UNIPROTKB|I3LJ29 - symbol:SMARCC1 "Uncharacterized protei... 233 8.4e-17 1
UNIPROTKB|F1SLI6 - symbol:LOC100626030 "Uncharacterized p... 233 2.7e-16 1
CGD|CAL0003837 - symbol:orf19.7234 species:5476 "Candida ... 190 1.1e-14 3
DICTYBASE|DDB_G0288285 - symbol:mybX "myb domain-containi... 89 1.1e-05 4
>TAIR|locus:2043263 [details] [associations]
symbol:SWI3A "SWITCH/sucrose nonfermenting 3A"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0016514 "SWI/SNF complex"
evidence=ISS] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA] InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00717 GO:GO:0007275 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 GO:GO:0016514 InterPro:IPR017884 PROSITE:PS51293
EMBL:AC002535 HSSP:P32591 eggNOG:COG5259 KO:K11649 EMBL:AY062794
EMBL:AY081570 IPI:IPI00529579 PIR:T00422 RefSeq:NP_850476.1
UniGene:At.27229 ProteinModelPortal:Q8W475 SMR:Q8W475 IntAct:Q8W475
STRING:Q8W475 PaxDb:Q8W475 PRIDE:Q8W475 EnsemblPlants:AT2G47620.1
GeneID:819375 KEGG:ath:AT2G47620 TAIR:At2g47620
HOGENOM:HOG000083881 InParanoid:Q8W475 OMA:SCPKEIF PhylomeDB:Q8W475
ProtClustDB:CLSN2680302 Genevestigator:Q8W475 Uniprot:Q8W475
Length = 512
Score = 618 (222.6 bits), Expect = 5.8e-103, Sum P(2) = 5.8e-103
Identities = 137/295 (46%), Positives = 180/295 (61%)
Query: 128 NQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVF 187
+ KIE+G P G+RV A PNSL+PI+ P + +V ETG+K+PPL SY DVF
Sbjct: 115 DNAKIEQGTPAGIRVTATPNSLRPITAPPLVEE-----RV----ETGIKVPPLTSYSDVF 165
Query: 188 GDLVKLKG-FKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGN 246
DL K C CGE+C+S Y+++KG ICEKCFKNGNYGE+ + DDF+ L GN
Sbjct: 166 SDLKKPDHVLVCAHCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFK---LIGN 222
Query: 247 SLTHGXXXXXXXXXXXXXSVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAH 306
S SV++HGD+WEL++Q+V TKS+LDCISKLIELPFGEF+MGSA
Sbjct: 223 SAA--AVWTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSA- 279
Query: 307 EMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATE-EPPAKRKR 365
+G LN EN V+ + Q H++ ++ D E EPPAKRKR
Sbjct: 280 --------SGRLNP---SILTEDENTEQVQTDGQEHEETETREEKEDRVNEDEPPAKRKR 328
Query: 366 IAPLSDGGSTLIKQVAHISTMVGPHVTXXXXXXXXXXLCNESSCPREIFDGDEDY 420
+A +S+G S+L+KQVA +++ VGP V LC+E+SCP+EIFD D DY
Sbjct: 329 VALISEGDSSLMKQVAAMASKVGPSVATAAAKAALAALCDEASCPKEIFDTD-DY 382
Score = 422 (153.6 bits), Expect = 5.8e-103, Sum P(2) = 5.8e-103
Identities = 87/153 (56%), Positives = 103/153 (67%)
Query: 3 MPQYDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFM 62
M DP+ E ELYTIP+ SSWF WDDIHE ER EFF SSI+RTPK+YKEYRDF+
Sbjct: 1 MEATDPSA--EIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFI 58
Query: 63 INKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVXXXXXXXXXXXXXX 122
INK+RE+ RRLTFT VRK LVGDV+LL KVF L++WGLINF +
Sbjct: 59 INKFREDTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSS--------SLKKNDH 110
Query: 123 XTELKNQVKIEEGAPNGVRVVALPNSLKPISVP 155
+ N KIE+G P G+RV A PNSL+PI+ P
Sbjct: 111 LLSVDN-AKIEQGTPAGIRVTATPNSLRPITAP 142
>TAIR|locus:2051028 [details] [associations]
symbol:SWI3B "switch subunit 3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0016514 "SWI/SNF complex" evidence=ISS] [GO:0040029 "regulation
of gene expression, epigenetic" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00717 GO:GO:0007275 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0016514
InterPro:IPR017884 PROSITE:PS51293 EMBL:AC002332 HSSP:P32591
eggNOG:COG5259 KO:K11649 OMA:LCARCYV EMBL:BT004085 EMBL:BT005094
IPI:IPI00525437 PIR:F84747 RefSeq:NP_180919.2 UniGene:At.43725
ProteinModelPortal:Q84JG2 SMR:Q84JG2 IntAct:Q84JG2 STRING:Q84JG2
PaxDb:Q84JG2 PRIDE:Q84JG2 EnsemblPlants:AT2G33610.1 GeneID:817927
KEGG:ath:AT2G33610 TAIR:At2g33610 HOGENOM:HOG000238867
InParanoid:Q84JG2 PhylomeDB:Q84JG2 ProtClustDB:CLSN2680010
Genevestigator:Q84JG2 Uniprot:Q84JG2
Length = 469
Score = 244 (91.0 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 43/100 (43%), Positives = 67/100 (67%)
Query: 8 PNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYR 67
P++ + + +PS+SSWF W DI++ E +L EFFD S S+ PK Y R+ +I +YR
Sbjct: 39 PSSSSDIDNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYR 98
Query: 68 EEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107
++ R+++FT VR++LV DV + +VF LD WGLIN+ +
Sbjct: 99 DDHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNS 138
Score = 144 (55.7 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 198 CGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGXXXXXX 257
C C C+ C+ K +C +C+ NY + +F+ ++ S
Sbjct: 175 CNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRVEISEESKPEWSDKEIL 234
Query: 258 XXXXXXXSVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGE-FMMGSAHE 307
+VM +GD+W+ VA +V +++ DC+S+ ++LPFGE F+ S E
Sbjct: 235 LLLE---AVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFVKESDSE 282
Score = 79 (32.9 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 329 SENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVG 388
S++++ ++M DQ+ D + + G P KR ++ PL+D + ++ Q A +S + G
Sbjct: 279 SDSEDGLEMFDQIKDS-DIPESEGIDKDGSSPNKRIKLTPLADASNPIMAQAAFLSALAG 337
Query: 389 PHV 391
+V
Sbjct: 338 TNV 340
>POMBASE|SPAC23H3.10 [details] [associations]
symbol:ssr2 "SWI/SNF and RSC complex subunit Ssr2"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IC] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IDA]
[GO:0016586 "RSC complex" evidence=IDA] InterPro:IPR000433
InterPro:IPR001005 InterPro:IPR007526 InterPro:IPR009057
Pfam:PF00249 Pfam:PF04433 PROSITE:PS01357 PROSITE:PS50135
PROSITE:PS50934 SMART:SM00291 SMART:SM00717 PomBase:SPAC23H3.10
GO:GO:0005737 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006357 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0000790 GO:GO:0016514
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0016586 eggNOG:COG5259
OrthoDB:EOG4PZNGG KO:K11649 EMBL:D89227 PIR:T38303 PIR:T43061
RefSeq:NP_593800.1 ProteinModelPortal:O14470 SMR:O14470
DIP:DIP-48383N STRING:O14470 EnsemblFungi:SPAC23H3.10.1
GeneID:2541851 KEGG:spo:SPAC23H3.10 OMA:TEYLTIT NextBio:20802939
Uniprot:O14470
Length = 503
Score = 249 (92.7 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 45/87 (51%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
+PS++ WF IH+ ER + EFF+G S +TP IYK+YRDFMIN YR EP+ LT T
Sbjct: 20 VPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTVTA 79
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++LVGDV + +V L++WGLIN+
Sbjct: 80 CRRNLVGDVCAIIRVHAFLEQWGLINY 106
Score = 112 (44.5 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 35/160 (21%), Positives = 61/160 (38%)
Query: 198 CGSCGEQCNSGCYEYSKGS-FVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGXXXXX 256
C +CG C+ Y K + IC C+K G + + DF D +
Sbjct: 193 CFTCGVNCSQTWYHNLKNKKYDICPNCYKQGRFSSSFNSSDFLCMDAIDFNHDEEKPWSN 252
Query: 257 XXXXXXXXSVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEMNSSSCPTG 316
++ +GD+W +A +V +++K C+ +++P + + G
Sbjct: 253 QETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIPIED-----PYRQKLQ----G 303
Query: 317 SLNSLKEGQSASSENQNDVK-----MEDQVHDQMNESKQN 351
+ K+G EN+N V + V M E KQN
Sbjct: 304 DFSPFKKGFLPFDENENPVLSTLTYLASIVQQGMKERKQN 343
Score = 47 (21.6 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 5 QYDPNTKPEFELYTIPSH 22
Q DP T+P F L I H
Sbjct: 107 QIDPETRPAFRLPPISGH 124
>DICTYBASE|DDB_G0277033 [details] [associations]
symbol:swi3 "SWIRM domain-containing protein Swi3"
species:44689 "Dictyostelium discoideum" [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF04433 PROSITE:PS50934
SMART:SM00717 InterPro:IPR001357 dictyBase:DDB_G0277033
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0016514 InterPro:IPR017884
PROSITE:PS51293 EMBL:AAFI02000019 SUPFAM:SSF52113 eggNOG:COG5259
KO:K11649 RefSeq:XP_642866.1 ProteinModelPortal:Q550R6 SMR:Q550R6
PRIDE:Q550R6 EnsemblProtists:DDB0219999 GeneID:8620732
KEGG:ddi:DDB_G0277033 InParanoid:Q550R6 OMA:QTTIDMP
ProtClustDB:CLSZ2430855 Uniprot:Q550R6
Length = 1223
Score = 258 (95.9 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 50/104 (48%), Positives = 68/104 (65%)
Query: 4 PQYDPNTKPEFEL-YTIP-SHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDF 61
PQ P + +TIP S +WF+ + IHE E+ L EFF G S S+TP++YKEYRDF
Sbjct: 626 PQPQPPKNVTLQSSFTIPPSQCTWFKMERIHEVEKNQLPEFFTGKSPSKTPEVYKEYRDF 685
Query: 62 MINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
MIN Y + P + LT T +R++LVGDV + +V L+ WGLIN+
Sbjct: 686 MINTYLQNPYQYLTLTAIRRNLVGDVCSILRVHSFLEHWGLINY 729
Score = 104 (41.7 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 34/123 (27%), Positives = 54/123 (43%)
Query: 216 SFVICEKCFKNGNYGEDKS---KDDFRFSDLGGNS-LTHGXXXXXXXXXXXXXSVMRHGD 271
+ ++C CF N D S KD F+ +L S L + + D
Sbjct: 880 TILLCNNCFTNDQTFIDHSHLIKDQFKKIELPEPSPLEDQWTDQETLLLLEALDI--YSD 937
Query: 272 NWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEMNSSSCPTGSLNSLKEGQSASSEN 331
+W VA +V TKSK C+ + ++LP E + + S P S NS+ G S+++ N
Sbjct: 938 SWNDVADHVKTKSKEQCLLQFLKLPIEEPYLEDNITKSISLQPPSS-NSILNGSSSNNNN 996
Query: 332 QND 334
N+
Sbjct: 997 NNN 999
Score = 43 (20.2 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 278 QNVPTKSKLDCISKLIELPFGE-FMMGSAHEMNS--SSCPTGSLN-SLKEGQSASSENQN 333
+N K K + + K + F E F + A + N P+ +N + K+ Q S+ Q+
Sbjct: 1113 ENALEKEK-NQLEKERQALFSERFSLLKASQNNQLQQQIPSYLVNQNKKDHQQQQSQLQS 1171
Query: 334 DVKMEDQVHDQMNESKQNGDAAT 356
++ + Q Q N + Q T
Sbjct: 1172 QLQQQPQQQQQQNYNDQPSATTT 1194
>POMBASE|SPAC17G6.10 [details] [associations]
symbol:ssr1 "SWI/SNF and RSC complex subunit Ssr1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=IDA] [GO:0016586 "RSC complex" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=NAS] InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00717 PomBase:SPAC17G6.10 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0000122
GO:GO:0000790 GO:GO:0016514 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0016586 HSSP:P32591 eggNOG:COG5259 OrthoDB:EOG4PZNGG
KO:K11649 PIR:T37842 RefSeq:NP_594257.1 ProteinModelPortal:O13788
DIP:DIP-48380N STRING:O13788 EnsemblFungi:SPAC17G6.10.1
GeneID:2542400 KEGG:spo:SPAC17G6.10 OMA:LCARCYV NextBio:20803459
Uniprot:O13788
Length = 527
Score = 234 (87.4 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 41/87 (47%), Positives = 59/87 (67%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
+P + WF + +HE E+ EFFDG + S+TP++YKEYRDFMI+ +R LTFT
Sbjct: 54 VPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDFMISTFRLNSKVYLTFTA 113
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V R L++WGLIN+
Sbjct: 114 CRRNLAGDVCAVLRVHRFLEQWGLINY 140
Score = 100 (40.3 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 26/113 (23%), Positives = 44/113 (38%)
Query: 198 CGSCGEQCNSGCYEYSKGS-FVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGXXXXX 256
C CG + N Y+ + +C C++ + + D++ + N +
Sbjct: 237 CYCCGNKFNESYYQSQTAQKYNVCISCYQQNRFPSPTTIADYKEVAIQ-NKIEDDDTWTA 295
Query: 257 XXXXXXXXSVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGE---FMMGSAH 306
V + D+W VA +V TKS +CI K + LP + F M H
Sbjct: 296 QELVLLSEGVEMYSDDWAKVASHVNTKSVEECILKFLNLPSSDKALFKMDKVH 348
>ASPGD|ASPL0000005061 [details] [associations]
symbol:AN6705 species:162425 "Emericella nidulans"
[GO:0016586 "RSC complex" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000433
InterPro:IPR001005 InterPro:IPR007526 InterPro:IPR009057
Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934 SMART:SM00291
SMART:SM00717 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:BN001301 InterPro:IPR017884
PROSITE:PS51293 EMBL:AACD01000112 eggNOG:COG5259 OrthoDB:EOG4PZNGG
KO:K11649 RefSeq:XP_664309.1 ProteinModelPortal:Q5AYC5
STRING:Q5AYC5 EnsemblFungi:CADANIAT00007492 GeneID:2870489
KEGG:ani:AN6705.2 HOGENOM:HOG000180903 OMA:SKTPAVY Uniprot:Q5AYC5
Length = 681
Score = 243 (90.6 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
Identities = 44/87 (50%), Positives = 60/87 (68%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
+PS+S+WF IH E+ AL EFF+G + S+TP +YK+YRDFMIN YR P LT T
Sbjct: 107 LPSYSTWFDMHTIHPIEKKALAEFFNGRNRSKTPAVYKDYRDFMINTYRLNPIEYLTVTA 166
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGLIN+
Sbjct: 167 CRRNLAGDVCAIMRVHSFLEQWGLINY 193
Score = 90 (36.7 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
Identities = 26/130 (20%), Positives = 52/130 (40%)
Query: 194 KGFKCGSCGEQCNSGCYEYSKGS-----------FVICEKCFKNGNYGEDKSKDDF-RFS 241
K +C SCG C + Y+K + + +C CF G + DF +
Sbjct: 308 KKIQCFSCGIDCTRLRFHYAKSTPATGTAAPDSKYDLCPNCFLQGRMPSSHNASDFVKLE 367
Query: 242 DLGGNSLTHGXXXXXXXXXXXXXSVMRHGD-NWELVAQNVPTKSKLDCISKLIELPFGEF 300
D + + + + D NWE +A +V T+++ +C+ K ++L +
Sbjct: 368 DSSYSRIPDREAPWSDSELLLLLEGLENFDENWEQIANHVGTRTREECVMKFLQLEIEDQ 427
Query: 301 MMGSAHEMNS 310
+ + E+ +
Sbjct: 428 YLEDSPEVRA 437
>SGD|S000001933 [details] [associations]
symbol:RSC8 "Component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0016586 "RSC
complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IMP;IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000082 "G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006337 "nucleosome disassembly" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA]
InterPro:IPR000433 InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF00569 Pfam:PF04433
PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50934 SMART:SM00291
SMART:SM00717 SGD:S000001933 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0000082 GO:GO:0008270 EMBL:D50617 EMBL:BK006940
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0006368 GO:GO:0006337 GO:GO:0016586
GO:GO:0043044 GO:GO:0006303 eggNOG:COG5259 EMBL:AY692841 PIR:S56292
RefSeq:NP_116695.3 RefSeq:NP_116697.3 ProteinModelPortal:P43609
SMR:P43609 DIP:DIP-1478N IntAct:P43609 MINT:MINT-401637
STRING:P43609 PaxDb:P43609 PeptideAtlas:P43609 EnsemblFungi:YFR037C
GeneID:850598 GeneID:850600 KEGG:sce:YFR037C KEGG:sce:YFR039C
CYGD:YFR037c HOGENOM:HOG000246692 KO:K11762 OMA:PYEYLTI
OrthoDB:EOG4PZNGG NextBio:966460 Genevestigator:P43609
GermOnline:YFR037C Uniprot:P43609
Length = 557
Score = 280 (103.6 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 94/369 (25%), Positives = 159/369 (43%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS +SWF IHE E+ + +FF+ SS +TPK YK+ R+F+IN YR P LT T
Sbjct: 82 IPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKDTRNFIINTYRLSPYEYLTITA 141
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINFGAVXXXXXXXXXXXXXXXTELKNQVKIEEGAPN 138
VR+++ DV+ + K+ L++WGLIN+ ++ P
Sbjct: 142 VRRNVAMDVASIVKIHAFLEKWGLINY------QIDPRTKPSLIGPSFTGHFQVVLDTPQ 195
Query: 139 GVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYLDVFGDLVKL----- 193
G++ LP ++ I G DG+ + V E V L + D D L
Sbjct: 196 GLKPF-LPENV--IKQEVEGGDGA---EPQVKKEFPVNLTIKKNVYDSAQDFNALQDESR 249
Query: 194 ------KGFKCGSCG-EQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGN 246
K + C +CG E N + +C +CF+ G++G + DF + GN
Sbjct: 250 NSRQIHKVYICHTCGNESINVRYHNLRARDTNLCSRCFQEGHFGANFQSSDFIRLENNGN 309
Query: 247 SLTHGXXXXXXXXXXXXXSVMRHGDNWELVAQNVPTKSKL-DCISKLIELPFGEF----M 301
S+ + + D WE +A +V ++ DCI K + LP + +
Sbjct: 310 SVKKNWSDQEMLLLLE--GIEMYEDQWEKIADHVGGHKRVEDCIEKFLSLPIEDNYIREV 367
Query: 302 MGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPA 361
+GS GS++ K + + Q ++ +D++ ++S++ + EE A
Sbjct: 368 VGSTLNGKGGDSRDGSVSGSKLMECVNDAVQTLLQGDDKLGKVSDKSREISEKYIEESQA 427
Query: 362 KRKRIAPLS 370
+ + L+
Sbjct: 428 IIQELVKLT 436
>CGD|CAL0002007 [details] [associations]
symbol:orf19.4488 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0044109 "cellular alcohol
catabolic process" evidence=IEA] [GO:0031496 "positive regulation
of mating type switching" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0005987 "sucrose catabolic
process" evidence=IEA] [GO:0000436 "carbon catabolite activation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF04433 PROSITE:PS50934 SMART:SM00717
CGD:CAL0002007 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 EMBL:AACQ01000141 KO:K11772
RefSeq:XP_712915.1 ProteinModelPortal:Q59TH7 SMR:Q59TH7
STRING:Q59TH7 GeneID:3645438 KEGG:cal:CaO19.4488 Uniprot:Q59TH7
Length = 971
Score = 265 (98.3 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 4 PQYDPNTKPEFE---LYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRD 60
P+ P KP+++ L IPS++SWF IH+ E+ +L EFFD S++PK+Y YR+
Sbjct: 404 PEEPPKEKPQYKQTHLIVIPSYASWFNMKKIHKIEKESLPEFFDSIHPSKSPKLYVNYRN 463
Query: 61 FMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
FMIN YR P+ LT T R++LVGDV L +V R L++WGLIN+
Sbjct: 464 FMINSYRLNPNEFLTLTSCRRNLVGDVGTLMRVHRFLNKWGLINY 508
Score = 42 (19.8 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 314 PTG-SLNSLKEGQSASSENQNDVKMEDQVHDQMNE--SKQNGDAATEEPPAKRKRIAPLS 370
PT +L +K G + ++ N+ D V+D ++ S G + T + + PLS
Sbjct: 900 PTRRALEQIKNGDNTNNTASNNSTTGDDVNDGGSKINSTTTGGSTTIDVELQDDSFKPLS 959
Score = 39 (18.8 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 25/110 (22%), Positives = 38/110 (34%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELPFGE--FMMGSAHEMNSSSCPTGSLNSLKEGQSAS 328
D L + KL+ KLIE GS + S+ G LN K
Sbjct: 841 DRISLTKSTIGVIKKLEEAIKLIESNNNNNNTATGSGGGVRDSTNINGLLNEAKSLLYKP 900
Query: 329 SENQ-NDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDGGSTLI 377
+ +K D ++ + + GD + +I + GGST I
Sbjct: 901 TRRALEQIKNGDNTNNTASNNSTTGDDVNDGG----SKINSTTTGGSTTI 946
>ZFIN|ZDB-GENE-080514-3 [details] [associations]
symbol:smarcc1a "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily c, member 1a"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00298 SMART:SM00717 InterPro:IPR001357
ZFIN:ZDB-GENE-080514-3 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 KO:K11649
GeneTree:ENSGT00390000018166 EMBL:CR391962 IPI:IPI00972152
RefSeq:XP_003200294.1 UniGene:Dr.76866 PRIDE:F1Q9K1
Ensembl:ENSDART00000109259 GeneID:403020 KEGG:dre:403020 CTD:403020
NextBio:20816825 ArrayExpress:F1Q9K1 Bgee:F1Q9K1 Uniprot:F1Q9K1
Length = 1089
Score = 241 (89.9 bits), Expect = 9.5e-19, Sum P(3) = 9.5e-19
Identities = 43/87 (49%), Positives = 62/87 (71%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS+++WF ++ IHE ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 446 IPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTS 505
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGL+N+
Sbjct: 506 CRRNLTGDVCAVMRVHAFLEQWGLVNY 532
Score = 54 (24.1 bits), Expect = 9.5e-19, Sum P(3) = 9.5e-19
Identities = 13/70 (18%), Positives = 31/70 (44%)
Query: 236 DDFRFSDLGGNSLTHGXXXXXXXXXXXXXSVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295
D + +L G G ++ + D+W V+++V ++++ +CI + L
Sbjct: 599 DIYSKKNLKGKGAAGGRDWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 658
Query: 296 PFGEFMMGSA 305
P + + S+
Sbjct: 659 PIEDQYLESS 668
Score = 44 (20.5 bits), Expect = 9.5e-19, Sum P(3) = 9.5e-19
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHV 391
P S G+ ++ VA ++++V P V
Sbjct: 681 PFSQSGNPVMSTVAFLASVVDPRV 704
>MGI|MGI:1203524 [details] [associations]
symbol:Smarcc1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily c, member 1"
species:10090 "Mus musculus" [GO:0001741 "XY body" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006323 "DNA packaging" evidence=TAS] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IEA] [GO:0008286 "insulin receptor
signaling pathway" evidence=IDA] [GO:0009887 "organ morphogenesis"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00298 SMART:SM00717 InterPro:IPR001357
MGI:MGI:1203524 GO:GO:0008286 GO:GO:0007399 GO:GO:0003677
GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
GO:GO:0009887 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
InterPro:IPR017884 PROSITE:PS51293 SUPFAM:SSF52113 GO:GO:0006337
GO:GO:0006323 GO:GO:0001741 GO:GO:0071778 eggNOG:COG5259 CTD:6599
HOGENOM:HOG000047736 HOVERGEN:HBG054849 KO:K11649 OMA:YKKYVHA
EMBL:U85614 EMBL:BC052423 EMBL:BC053064 IPI:IPI00125662
IPI:IPI00515361 PIR:T30967 RefSeq:NP_033237.2 UniGene:Mm.85410
ProteinModelPortal:P97496 SMR:P97496 DIP:DIP-39986N IntAct:P97496
MINT:MINT-4084777 STRING:P97496 PhosphoSite:P97496 PaxDb:P97496
PRIDE:P97496 Ensembl:ENSMUST00000088716 Ensembl:ENSMUST00000111969
GeneID:20588 KEGG:mmu:20588 UCSC:uc009rto.1 UCSC:uc009rtp.1
GeneTree:ENSGT00390000018166 InParanoid:P97496 OrthoDB:EOG4JHCF5
NextBio:298891 Bgee:P97496 Genevestigator:P97496
GermOnline:ENSMUSG00000032481 Uniprot:P97496
Length = 1104
Score = 233 (87.1 bits), Expect = 9.7e-19, Sum P(3) = 9.7e-19
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 450 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 509
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGL+N+
Sbjct: 510 CRRNLTGDVCAVMRVHAFLEQWGLVNY 536
Score = 56 (24.8 bits), Expect = 9.7e-19, Sum P(3) = 9.7e-19
Identities = 14/66 (21%), Positives = 33/66 (50%)
Query: 299 EFMMGSAHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEE 358
E + GS E + P G E + + ++ D K++D+ +++ E +Q+ D + +
Sbjct: 770 EKLEGSEEEKMETD-PDGQQPEKAENKVENESDEGD-KIQDRENEKNTEKEQDSDVSEDV 827
Query: 359 PPAKRK 364
P +++
Sbjct: 828 KPEEKE 833
Score = 52 (23.4 bits), Expect = 9.7e-19, Sum P(3) = 9.7e-19
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 639 DDWNKVSEHVGSRTQDECILHFLRLP 664
Score = 46 (21.3 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 350 QNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHV 391
+N DA+ P A + P S G+ ++ VA ++++V P V
Sbjct: 671 ENSDASLG-PLAYQP--VPFSQSGNPVMSTVAFLASVVDPRV 709
>ZFIN|ZDB-GENE-060503-273 [details] [associations]
symbol:smarcc1b "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily c,
member 1b" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00717 InterPro:IPR001357
ZFIN:ZDB-GENE-060503-273 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 GeneTree:ENSGT00390000018166
EMBL:CR626876 EMBL:CR626877 IPI:IPI00972005
Ensembl:ENSDART00000085619 Bgee:E7FAW0 Uniprot:E7FAW0
Length = 961
Score = 236 (88.1 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 43/87 (49%), Positives = 62/87 (71%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
+P+++SWF ++ IH+ ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 427 VPTYASWFDYNCIHQIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTS 486
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV L +V L++WGLIN+
Sbjct: 487 SRRNLTGDVCALIRVHSFLEQWGLINY 513
Score = 56 (24.8 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ DCI + LP
Sbjct: 615 DDWNKVSEHVGSRTQDDCILHFLRLP 640
Score = 41 (19.5 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHVTXXXXXXXXXXLCN-ESSCPREIFDGD 417
P S G+ ++ VA ++++V V P E F+ +
Sbjct: 662 PFSQSGNPVMSTVAFLASVVDSRVASAAAKAALEEFSRAREDAPSEFFNAN 712
>TAIR|locus:2036942 [details] [associations]
symbol:SWI3C "SWITCH/sucrose nonfermenting 3C"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA]
[GO:0045132 "meiotic chromosome segregation" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00717 GO:GO:0007275 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 GO:GO:0016514 InterPro:IPR017884 PROSITE:PS51293
HSSP:P32591 eggNOG:COG5259 EMBL:AC007727 KO:K11649 EMBL:AY091026
EMBL:AY117245 IPI:IPI00532467 PIR:D86350 RefSeq:NP_173589.1
UniGene:At.41645 ProteinModelPortal:Q9XI07 SMR:Q9XI07 IntAct:Q9XI07
STRING:Q9XI07 PaxDb:Q9XI07 PRIDE:Q9XI07 EnsemblPlants:AT1G21700.1
GeneID:838774 KEGG:ath:AT1G21700 TAIR:At1g21700
HOGENOM:HOG000243996 InParanoid:Q9XI07 OMA:VAASCAH PhylomeDB:Q9XI07
ProtClustDB:CLSN2679743 Genevestigator:Q9XI07 Uniprot:Q9XI07
Length = 807
Score = 242 (90.2 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 74/287 (25%), Positives = 118/287 (41%)
Query: 16 LYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLT 75
++ +P HS WF + + ER + +FF G S + TP+ Y E+R+ +++KY E P + LT
Sbjct: 175 VHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKTLT 234
Query: 76 FTQVRKSLVG-DVSLLHKVFRLLDEWGLINFGAVXXXXXXXXXXXXXXXTELKNQVKIEE 134
+ + + G D+ +VFR LD WG+IN+ A + +V +
Sbjct: 235 ISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDVREDTNGEVNVPS 294
Query: 135 GAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPL---ASYLDVFGDLV 191
A + +SL PN G GE LP L + LD+
Sbjct: 295 AALTSI------DSLIKFDKPNCRHKG---------GEVYSSLPSLDGDSPDLDI-RIRE 338
Query: 192 KLKGFKCGSCGEQCNSGCYE-YSKGSFVICEKCFKNGNYGEDKSKDDF-RFSDLGGNSLT 249
L C C + ++ KG ++C CF +G + S DF R +
Sbjct: 339 HLCDSHCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQ 398
Query: 250 HGXXXXXXXXXXXXXSVMRHGDNWELVAQNVPTKSKLDCISKLIELP 296
G +V + +NW +A +V +KSK CI + LP
Sbjct: 399 DGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLP 445
Score = 48 (22.0 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 26/112 (23%), Positives = 43/112 (38%)
Query: 316 GSLNSLKEGQSASSENQN---DVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDG 372
G L++++ ++EN D K D D S+Q D + P K +P
Sbjct: 449 GLLDNVEVSGVTNTENPTNGYDHKGTDSNGDLPGYSEQGSDTEIKLPFVK----SP---- 500
Query: 373 GSTLIKQVAHISTMVGPHVTXXXXXXXXXXLCNESSCPREIFDGDEDYLANG 424
+ ++ VA +++ VGP V L + E G E L +G
Sbjct: 501 -NPVMALVAFLASAVGPRVAASCAHESLSVLSEDDRMKSEGMQGKEASLLDG 551
>UNIPROTKB|F1PVA9 [details] [associations]
symbol:SMARCC2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00298 SMART:SM00717 InterPro:IPR001357
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 GeneTree:ENSGT00390000018166
OMA:QYIQAEP EMBL:AAEX03006920 Ensembl:ENSCAFT00000000173
Uniprot:F1PVA9
Length = 1092
Score = 237 (88.5 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 6 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINK 65
++ N + IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+
Sbjct: 406 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT 465
Query: 66 YREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
YR P LT T R++L GDV + +V L++WGLIN+
Sbjct: 466 YRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 505
Score = 52 (23.4 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 611 DDWNKVSEHVGSRTQDECILHFLRLP 636
Score = 44 (20.5 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHV 391
P S G+ ++ VA ++++V P V
Sbjct: 658 PFSQSGNPVMSTVAFLASVVDPRV 681
Score = 43 (20.2 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 146 PNSLKPISVPNSGADGSGNGKVAVAGETGVKLPP 179
PN P ++ GSG+ VA + G LPP
Sbjct: 1045 PNQQTPPAMMPGAVPGSGHPGVA---DPGTPLPP 1075
>UNIPROTKB|G3N0H4 [details] [associations]
symbol:SMARCC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00298 SMART:SM00717 InterPro:IPR001357 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 GeneTree:ENSGT00390000018166
EMBL:DAAA02054442 Ensembl:ENSBTAT00000065210 Uniprot:G3N0H4
Length = 925
Score = 233 (87.1 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 387 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 446
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGL+N+
Sbjct: 447 CRRNLTGDVCAVMRVHAFLEQWGLVNY 473
Score = 52 (23.4 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 577 DDWNKVSEHVGSRTQDECILHFLRLP 602
Score = 46 (21.3 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 350 QNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHV 391
+N DA+ P A + P S G+ ++ VA ++++V P V
Sbjct: 609 ENSDASLG-PLAYQP--VPFSQSGNPVMSTVAFLASVVDPRV 647
Score = 38 (18.4 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 310 SSSCPTGSLNSLKEGQSASSENQNDV--KMEDQVHDQMNESKQNGDAATEEPPAKRK 364
S + G L ++ EN+ D K +D +++ +E +Q+ + + E+ ++ K
Sbjct: 734 SLAASKGGLMHIQLKAENKGENETDEGDKAQDGENEKNSEKEQDSEVS-EDTKSEEK 789
>UNIPROTKB|F1N4N6 [details] [associations]
symbol:SMARCC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR007526 InterPro:IPR009057
Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934 SMART:SM00298
SMART:SM00717 InterPro:IPR001357 GO:GO:0017053 GO:GO:0045892
GO:GO:0045893 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 GO:GO:0006337
GeneTree:ENSGT00390000018166 OMA:QYIQAEP EMBL:DAAA02013534
IPI:IPI00712028 Ensembl:ENSBTAT00000019562 Uniprot:F1N4N6
Length = 1094
Score = 237 (88.5 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 6 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINK 65
++ N + IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+
Sbjct: 377 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT 436
Query: 66 YREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
YR P LT T R++L GDV + +V L++WGLIN+
Sbjct: 437 YRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 476
Score = 52 (23.4 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 613 DDWNKVSEHVGSRTQDECILHFLRLP 638
Score = 46 (21.3 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 146 PNSLKPISVPNSGADGSGNGKVAVAGETGVKLPP 179
PN P S+ GSG+ VA + G LPP
Sbjct: 1047 PNQQTPPSMMPGAVPGSGHPGVA---DPGTPLPP 1077
Score = 44 (20.5 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHV 391
P S G+ ++ VA ++++V P V
Sbjct: 660 PFSQSGNPVMSTVAFLASVVDPRV 683
Score = 43 (20.2 bits), Expect = 6.2e-18, Sum P(3) = 6.2e-18
Identities = 15/65 (23%), Positives = 34/65 (52%)
Query: 316 GSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDGGST 375
G++ + +++ + ++D K +D ++ +E K +GD + P K K P +G
Sbjct: 775 GTVEEEAKEKTSEAPKKDDEKGKDGDSEKESE-KSDGDPTAD--PEKEKE--P-KEGQEE 828
Query: 376 LIKQV 380
++K+V
Sbjct: 829 VLKEV 833
>UNIPROTKB|F1MYU1 [details] [associations]
symbol:SMARCC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0009887 "organ morphogenesis" evidence=IEA] [GO:0008286
"insulin receptor signaling pathway" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001741 "XY body" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00298 SMART:SM00717 InterPro:IPR001357
GO:GO:0008286 GO:GO:0003677 GO:GO:0045944 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 GO:GO:0009887 GO:GO:0071564 GO:GO:0071565
InterPro:IPR017884 PROSITE:PS51293 SUPFAM:SSF52113 GO:GO:0006337
GO:GO:0001741 GO:GO:0071778 OMA:YKKYVHA
GeneTree:ENSGT00390000018166 EMBL:DAAA02054442 IPI:IPI01002084
Ensembl:ENSBTAT00000044741 Uniprot:F1MYU1
Length = 952
Score = 233 (87.1 bits), Expect = 5.5e-18, Sum P(3) = 5.5e-18
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 387 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 446
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGL+N+
Sbjct: 447 CRRNLTGDVCAVMRVHAFLEQWGLVNY 473
Score = 52 (23.4 bits), Expect = 5.5e-18, Sum P(3) = 5.5e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 576 DDWNKVSEHVGSRTQDECILHFLRLP 601
Score = 46 (21.3 bits), Expect = 5.5e-18, Sum P(3) = 5.5e-18
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 350 QNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHV 391
+N DA+ P A + P S G+ ++ VA ++++V P V
Sbjct: 608 ENSDASLG-PLAYQP--VPFSQSGNPVMSTVAFLASVVDPRV 646
Score = 39 (18.8 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 322 KEGQSASSENQNDVKMEDQVHDQMNES---KQNGDAATEEPPAKRK 364
++ + A ++ +N+ D+ D NE K+ +E+ ++ K
Sbjct: 724 QQPEKAENKGENETDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEK 769
>UNIPROTKB|F1P1A8 [details] [associations]
symbol:F1P1A8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001741
"XY body" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0008286
"insulin receptor signaling pathway" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071778
"WINAC complex" evidence=IEA] InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00298 SMART:SM00717 InterPro:IPR001357
GO:GO:0008286 GO:GO:0003677 GO:GO:0045944 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 GO:GO:0071564 GO:GO:0071565 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 GO:GO:0006337 GO:GO:0001741
GO:GO:0071778 OMA:YKKYVHA GeneTree:ENSGT00390000018166
EMBL:AADN02000062 EMBL:AADN02000057 EMBL:AADN02000058
EMBL:AADN02000059 EMBL:AADN02000060 EMBL:AADN02000061
IPI:IPI00575887 Ensembl:ENSGALT00000008096 Uniprot:F1P1A8
Length = 1035
Score = 234 (87.4 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 44/87 (50%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 386 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 445
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGLIN+
Sbjct: 446 CRRNLTGDVCAVMRVHAFLEQWGLINY 472
Score = 52 (23.4 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 575 DDWNKVSEHVGSRTQDECILHFLRLP 600
Score = 46 (21.3 bits), Expect = 5.8e-18, Sum P(3) = 5.8e-18
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 350 QNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHV 391
+N DA+ P A + P S G+ ++ VA ++++V P V
Sbjct: 607 ENSDASLG-PLAYQP--VPFSQSGNPVMSTVAFLASVVDPRV 645
Score = 44 (20.5 bits), Expect = 9.3e-18, Sum P(3) = 9.3e-18
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 322 KEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSD 371
+E ++ Q K+E + ++ E ++ + E P K + +D
Sbjct: 713 EEKMETETDGQQPEKVESKAESEIEEGEKVQEGENERNPEKEQESEATAD 762
>RGD|1304850 [details] [associations]
symbol:Smarcc1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily c, member 1"
species:10116 "Rattus norvegicus" [GO:0001741 "XY body"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0005622 "intracellular"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0008286 "insulin receptor signaling
pathway" evidence=ISO] [GO:0009887 "organ morphogenesis"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=ISO] [GO:0071565 "nBAF complex" evidence=ISO] [GO:0071778
"WINAC complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00298 SMART:SM00717 InterPro:IPR001357 RGD:1304850
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 IPI:IPI00764046
Ensembl:ENSRNOT00000028250 ArrayExpress:D4A4J7 Uniprot:D4A4J7
Length = 1086
Score = 233 (87.1 bits), Expect = 6.0e-18, Sum P(3) = 6.0e-18
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 450 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 509
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGL+N+
Sbjct: 510 CRRNLTGDVCAVMRVHAFLEQWGLVNY 536
Score = 52 (23.4 bits), Expect = 6.0e-18, Sum P(3) = 6.0e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 639 DDWNKVSEHVGSRTQDECILHFLRLP 664
Score = 48 (22.0 bits), Expect = 6.0e-18, Sum P(3) = 6.0e-18
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 319 NSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATE-EPPAKRKRIA-PLSDG 372
NS KE S +SE DVK E++ ++ E+K+ D E E +K++ +S+G
Sbjct: 814 NSEKERDSDTSE---DVKPEEKENE---ENKELTDTCKERESDTGKKKVEHEISEG 863
Score = 46 (21.3 bits), Expect = 9.6e-18, Sum P(3) = 9.6e-18
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 350 QNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHV 391
+N DA+ P A + P S G+ ++ VA ++++V P V
Sbjct: 671 ENSDASLG-PLAYQP--VPFSQSGNPVMSTVAFLASVVDPRV 709
Score = 43 (20.2 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 322 KEGQSASSENQNDVKMEDQVHDQMNE--SKQNGDAATEE 358
++ + A ++ +N+ D++ D NE S++ D+ T E
Sbjct: 787 QQPEKAENKGENESDEGDKIQDGENEKNSEKERDSDTSE 825
>UNIPROTKB|F1SM00 [details] [associations]
symbol:LOC100621845 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00298 SMART:SM00717 InterPro:IPR001357
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 GeneTree:ENSGT00390000018166
EMBL:CU498845 Ensembl:ENSSSCT00000000410 OMA:AWFDYNX Uniprot:F1SM00
Length = 1167
Score = 237 (88.5 bits), Expect = 6.4e-18, Sum P(3) = 6.4e-18
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 6 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINK 65
++ N + IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+
Sbjct: 425 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT 484
Query: 66 YREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
YR P LT T R++L GDV + +V L++WGLIN+
Sbjct: 485 YRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 524
Score = 52 (23.4 bits), Expect = 6.4e-18, Sum P(3) = 6.4e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 661 DDWNKVSEHVGSRTQDECILHFLRLP 686
Score = 46 (21.3 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 146 PNSLKPISVPNSGADGSGNGKVAVAGETGVKLPPLASYL 184
P S+ P +VP SG G A+ L P AS L
Sbjct: 1103 PPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPL 1141
Score = 44 (20.5 bits), Expect = 6.4e-18, Sum P(3) = 6.4e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHV 391
P S G+ ++ VA ++++V P V
Sbjct: 708 PFSQSGNPVMSTVAFLASVVDPRV 731
>UNIPROTKB|I3LRY4 [details] [associations]
symbol:I3LRY4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00298 SMART:SM00717 InterPro:IPR001357 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 GeneTree:ENSGT00390000018166
OMA:QYIQAEP EMBL:CU694915 Ensembl:ENSSSCT00000032096 Uniprot:I3LRY4
Length = 1212
Score = 237 (88.5 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 6 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINK 65
++ N + IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+
Sbjct: 379 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT 438
Query: 66 YREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
YR P LT T R++L GDV + +V L++WGLIN+
Sbjct: 439 YRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 478
Score = 57 (25.1 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 146 PNSLKPISVPNSGADG-SGNGKVAVAGETGVKLPPLASYLDVFGDL 190
P S+ P +VP SG G +GN + + G+ PP A + FG L
Sbjct: 1057 PPSMMPGAVPGSGHPGVAGNAPLGLP--FGMPPPPPAPSIIPFGSL 1100
Score = 52 (23.4 bits), Expect = 7.4e-18, Sum P(3) = 7.4e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 615 DDWNKVSEHVGSRTQDECILHFLRLP 640
Score = 44 (20.5 bits), Expect = 7.4e-18, Sum P(3) = 7.4e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHV 391
P S G+ ++ VA ++++V P V
Sbjct: 662 PFSQSGNPVMSTVAFLASVVDPRV 685
>MGI|MGI:1915344 [details] [associations]
symbol:Smarcc2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily c, member 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006337 "nucleosome disassembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=ISO] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00298 SMART:SM00717 InterPro:IPR001357
MGI:MGI:1915344 GO:GO:0017053 GO:GO:0045892 GO:GO:0045893
GO:GO:0007399 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
InterPro:IPR017884 PROSITE:PS51293 SUPFAM:SSF52113 GO:GO:0006337
eggNOG:COG5259 HOGENOM:HOG000047736 HOVERGEN:HBG054849 KO:K11649
GeneTree:ENSGT00390000018166 OrthoDB:EOG4JHCF5 CTD:6601
ChiTaRS:SMARCC2 EMBL:BC058720 EMBL:BC062102 IPI:IPI00381019
IPI:IPI00459742 RefSeq:NP_001107568.1 RefSeq:NP_001107569.1
RefSeq:NP_937803.1 UniGene:Mm.417338 ProteinModelPortal:Q6PDG5
SMR:Q6PDG5 DIP:DIP-48884N IntAct:Q6PDG5 STRING:Q6PDG5
PhosphoSite:Q6PDG5 PaxDb:Q6PDG5 PRIDE:Q6PDG5
Ensembl:ENSMUST00000026433 Ensembl:ENSMUST00000105235 GeneID:68094
KEGG:mmu:68094 UCSC:uc007hmw.2 UCSC:uc007hmx.2 InParanoid:Q6PDG5
OMA:QYIQAEP NextBio:326404 Bgee:Q6PDG5 Genevestigator:Q6PDG5
GermOnline:ENSMUSG00000025369 Uniprot:Q6PDG5
Length = 1213
Score = 237 (88.5 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 6 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINK 65
++ N + IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+
Sbjct: 413 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT 472
Query: 66 YREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
YR P LT T R++L GDV + +V L++WGLIN+
Sbjct: 473 YRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
Score = 52 (23.4 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 618 DDWNKVSEHVGSRTQDECILHFLRLP 643
Score = 50 (22.7 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 146 PNSLKPISVPNSGADG-SGNGKVAVAGETGVKLPPLASYLDV-FGDL 190
P S+ P +VP SG G +GN + + G+ PP A+ + FG L
Sbjct: 1057 PPSMMPGAVPGSGHPGVAGNAPLGLP--FGMPPPPPAAPSVIPFGSL 1101
Score = 44 (20.5 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHV 391
P S G+ ++ VA ++++V P V
Sbjct: 665 PFSQSGNPVMSTVAFLASVVDPRV 688
Score = 42 (19.8 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 9/57 (15%), Positives = 29/57 (50%)
Query: 325 QSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDGGSTLIKQVA 381
+ + E ++V +D+ + +S++ + + +P ++ ++G ++K+VA
Sbjct: 783 EEEAKEEISEVPKKDEEKGKEGDSEKESEKSDGDPIVDPEKDKEPTEGQEEVLKEVA 839
Score = 40 (19.1 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 137 PNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETGVKLPP 179
P V +A+P + + P SGA G G+ G P
Sbjct: 980 PPTVHGLAVPPAAVASAPPGSGAPPGSLGPSEQIGQAGTTAGP 1022
>UNIPROTKB|Q8TAQ2 [details] [associations]
symbol:SMARCC2 "SWI/SNF complex subunit SMARCC2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0016514 "SWI/SNF complex"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0017053
"transcriptional repressor complex" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=NAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0006337 "nucleosome disassembly" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00298 SMART:SM00717 InterPro:IPR001357
GO:GO:0045892 GO:GO:0045893 GO:GO:0007399 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006357 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
GO:GO:0003713 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
InterPro:IPR017884 PROSITE:PS51293 SUPFAM:SSF52113 GO:GO:0006337
eggNOG:COG5259 UniGene:Hs.632717 EMBL:AC073896 HOGENOM:HOG000047736
HOVERGEN:HBG054849 KO:K11649 EMBL:U66616 EMBL:BT009924
EMBL:AB209006 EMBL:BC009067 EMBL:BC013045 EMBL:BC026222
IPI:IPI00150057 IPI:IPI00216047 IPI:IPI00793163
RefSeq:NP_001123892.1 RefSeq:NP_003066.2 RefSeq:NP_620706.1
UniGene:Hs.236030 ProteinModelPortal:Q8TAQ2 SMR:Q8TAQ2
DIP:DIP-27611N IntAct:Q8TAQ2 MINT:MINT-1151033 STRING:Q8TAQ2
PhosphoSite:Q8TAQ2 DMDM:57012959 PaxDb:Q8TAQ2 PeptideAtlas:Q8TAQ2
PRIDE:Q8TAQ2 DNASU:6601 Ensembl:ENST00000267064
Ensembl:ENST00000347471 Ensembl:ENST00000394023 GeneID:6601
KEGG:hsa:6601 UCSC:uc001ska.3 UCSC:uc001skb.3 CTD:6601
GeneCards:GC12M056555 HGNC:HGNC:11105 HPA:CAB004321 HPA:HPA021213
MIM:601734 neXtProt:NX_Q8TAQ2 PharmGKB:PA35955 InParanoid:Q8TAQ2
PhylomeDB:Q8TAQ2 ChiTaRS:SMARCC2 GenomeRNAi:6601 NextBio:25677
ArrayExpress:Q8TAQ2 Bgee:Q8TAQ2 CleanEx:HS_SMARCC2
Genevestigator:Q8TAQ2 GermOnline:ENSG00000139613 Uniprot:Q8TAQ2
Length = 1214
Score = 237 (88.5 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 6 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINK 65
++ N + IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+
Sbjct: 413 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT 472
Query: 66 YREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
YR P LT T R++L GDV + +V L++WGLIN+
Sbjct: 473 YRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
Score = 53 (23.7 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 146 PNSLKPISVPNSGADG-SGNGKVAVAGETGVKLPPLASYLDVFGDL 190
P S+ P +VP SG G +GN + + PP A + FG L
Sbjct: 1057 PPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPPAPSIIPFGSL 1102
Score = 52 (23.4 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 618 DDWNKVSEHVGSRTQDECILHFLRLP 643
Score = 44 (20.5 bits), Expect = 7.5e-18, Sum P(3) = 7.5e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHV 391
P S G+ ++ VA ++++V P V
Sbjct: 665 PFSQSGNPVMSTVAFLASVVDPRV 688
Score = 38 (18.4 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 322 KEGQSASSENQNDVKMEDQVHDQMNES-KQNGDAATEEPPAKRKRIAPLSDGGSTLIKQV 380
+E + +SE + + + D ES K +GD + P K K P +G ++K+V
Sbjct: 784 EEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVD--PEKEKE--P-KEGQEEVLKEV 838
>RGD|1597704 [details] [associations]
symbol:Smarcc2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily c, member 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006337 "nucleosome
disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=ISO] [GO:0071565 "nBAF complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0017053 "transcriptional repressor
complex" evidence=ISO] InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00298 SMART:SM00717 InterPro:IPR001357
RGD:1597704 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 SUPFAM:SSF52113 KO:K11649
GeneTree:ENSGT00390000018166 IPI:IPI00393081 RefSeq:XP_001055673.1
ProteinModelPortal:D4A510 PhosphoSite:D4A510
Ensembl:ENSRNOT00000028244 GeneID:685179 KEGG:rno:685179
UCSC:RGD:1597704 NextBio:729140 ArrayExpress:D4A510 Uniprot:D4A510
Length = 1135
Score = 236 (88.1 bits), Expect = 7.8e-18, Sum P(3) = 7.8e-18
Identities = 42/100 (42%), Positives = 65/100 (65%)
Query: 6 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINK 65
++ N + +PS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+
Sbjct: 413 HEDNVTEQTHHIIVPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT 472
Query: 66 YREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
YR P LT T R++L GDV + +V L++WGLIN+
Sbjct: 473 YRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
Score = 52 (23.4 bits), Expect = 7.8e-18, Sum P(3) = 7.8e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 649 DDWNKVSEHVGSRTQDECILHFLRLP 674
Score = 46 (21.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 146 PNSLKPISVPNSGADGSGNGKVAVAGETGVKLPP 179
PN P S+ GSG+ VA + G LPP
Sbjct: 1088 PNQQTPPSMMPGAVPGSGHPGVA---DPGTPLPP 1118
Score = 44 (20.5 bits), Expect = 7.8e-18, Sum P(3) = 7.8e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHV 391
P S G+ ++ VA ++++V P V
Sbjct: 696 PFSQSGNPVMSTVAFLASVVDPRV 719
Score = 43 (20.2 bits), Expect = 9.9e-18, Sum P(3) = 9.9e-18
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 322 KEGQSASSENQNDVKMEDQVHD-----QMNESKQNGDAATEEPPAKRK 364
++G+ A SE +++ D + D + E ++ G EP +RK
Sbjct: 830 EKGKEADSEKESEKSDGDPIVDPEKDKEPTEGQEEGLKEVAEPEGERK 877
>UNIPROTKB|F8VXC8 [details] [associations]
symbol:SMARCC2 "SWI/SNF complex subunit SMARCC2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00298 SMART:SM00717 InterPro:IPR001357 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 EMBL:AC073896 HGNC:HGNC:11105
ChiTaRS:SMARCC2 OMA:QYIQAEP IPI:IPI01021606
ProteinModelPortal:F8VXC8 SMR:F8VXC8 PRIDE:F8VXC8
Ensembl:ENST00000550164 ArrayExpress:F8VXC8 Bgee:F8VXC8
Uniprot:F8VXC8
Length = 1245
Score = 237 (88.5 bits), Expect = 8.3e-18, Sum P(3) = 8.3e-18
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 6 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINK 65
++ N + IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+
Sbjct: 413 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDT 472
Query: 66 YREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
YR P LT T R++L GDV + +V L++WGLIN+
Sbjct: 473 YRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
Score = 53 (23.7 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 146 PNSLKPISVPNSGADG-SGNGKVAVAGETGVKLPPLASYLDVFGDL 190
P S+ P +VP SG G +GN + + PP A + FG L
Sbjct: 1088 PPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPPAPSIIPFGSL 1133
Score = 52 (23.4 bits), Expect = 8.3e-18, Sum P(3) = 8.3e-18
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 649 DDWNKVSEHVGSRTQDECILHFLRLP 674
Score = 44 (20.5 bits), Expect = 8.3e-18, Sum P(3) = 8.3e-18
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHV 391
P S G+ ++ VA ++++V P V
Sbjct: 696 PFSQSGNPVMSTVAFLASVVDPRV 719
Score = 38 (18.4 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 322 KEGQSASSENQNDVKMEDQVHDQMNES-KQNGDAATEEPPAKRKRIAPLSDGGSTLIKQV 380
+E + +SE + + + D ES K +GD + P K K P +G ++K+V
Sbjct: 815 EEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVD--PEKEKE--P-KEGQEEVLKEV 869
>UNIPROTKB|Q92922 [details] [associations]
symbol:SMARCC1 "SWI/SNF complex subunit SMARCC1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0001741
"XY body" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0008286 "insulin receptor signaling pathway"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0047485 "protein N-terminus binding"
evidence=IPI] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0071564 "npBAF complex" evidence=ISS] [GO:0071565 "nBAF
complex" evidence=ISS] [GO:0071778 "WINAC complex" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=NAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=NAS] [GO:0006337 "nucleosome disassembly"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00298 SMART:SM00717 InterPro:IPR001357
GO:GO:0008286 GO:GO:0045893 GO:GO:0007399 GO:GO:0003677
GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006357
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 GO:GO:0009887 GO:GO:0003713 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 InterPro:IPR017884 PROSITE:PS51293
Pathway_Interaction_DB:ar_tf_pathway SUPFAM:SSF52113 GO:GO:0006337
GO:GO:0001741 GO:GO:0071778 eggNOG:COG5259 EMBL:U66615
EMBL:BC039843 EMBL:BC065253 EMBL:BC113465 EMBL:BC117213
IPI:IPI00234252 RefSeq:NP_003065.3 UniGene:Hs.476179 PDB:2YUS
PDBsum:2YUS ProteinModelPortal:Q92922 SMR:Q92922 DIP:DIP-27545N
DIP:DIP-33044N IntAct:Q92922 MINT:MINT-1137868 STRING:Q92922
PhosphoSite:Q92922 DMDM:209572723 PaxDb:Q92922 PRIDE:Q92922
DNASU:6599 Ensembl:ENST00000254480 GeneID:6599 KEGG:hsa:6599
UCSC:uc003crq.2 CTD:6599 GeneCards:GC03M047626 H-InvDB:HIX0030795
HGNC:HGNC:11104 HPA:CAB011576 HPA:CAB016336 HPA:HPA024352
HPA:HPA026853 MIM:601732 neXtProt:NX_Q92922 PharmGKB:PA35954
HOGENOM:HOG000047736 HOVERGEN:HBG054849 InParanoid:Q92922 KO:K11649
OMA:YKKYVHA OrthoDB:EOG4V9TSW PhylomeDB:Q92922 ChiTaRS:SMARCC1
EvolutionaryTrace:Q92922 GenomeRNAi:6599 NextBio:25671
ArrayExpress:Q92922 Bgee:Q92922 CleanEx:HS_SMARCC1
Genevestigator:Q92922 GermOnline:ENSG00000173473 Uniprot:Q92922
Length = 1105
Score = 233 (87.1 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 451 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 510
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGL+N+
Sbjct: 511 CRRNLTGDVCAVMRVHAFLEQWGLVNY 537
Score = 52 (23.4 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 640 DDWNKVSEHVGSRTQDECILHFLRLP 665
Score = 46 (21.3 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 350 QNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHV 391
+N DA+ P A + P S G+ ++ VA ++++V P V
Sbjct: 672 ENSDASLG-PLAYQP--VPFSQSGNPVMSTVAFLASVVDPRV 710
Score = 45 (20.9 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 319 NSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEE 358
N EG A + +N+ E + +++E ++ + TEE
Sbjct: 799 NETDEGDKAQ-DGENEKNSEKEQDSEVSEDTKSEEKETEE 837
Score = 41 (19.5 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 305 AHEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRK 364
A E + P G E + + ++ D K +D +++ +E +Q+ + + E+ ++ K
Sbjct: 776 AEEEKMEADPDGQQPEKAENKVENETDEGD-KAQDGENEKNSEKEQDSEVS-EDTKSEEK 833
>UNIPROTKB|E2REF0 [details] [associations]
symbol:SMARCC1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=IEA] [GO:0009887 "organ morphogenesis"
evidence=IEA] [GO:0008286 "insulin receptor signaling pathway"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001741 "XY body"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00298 SMART:SM00717 InterPro:IPR001357 GO:GO:0008286
GO:GO:0003677 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
GO:GO:0009887 GO:GO:0071564 GO:GO:0071565 InterPro:IPR017884
PROSITE:PS51293 SUPFAM:SSF52113 GO:GO:0006337 GO:GO:0001741
GO:GO:0071778 CTD:6599 KO:K11649 OMA:YKKYVHA
GeneTree:ENSGT00390000018166 EMBL:AAEX03012237 EMBL:AAEX03012238
RefSeq:XP_533845.2 ProteinModelPortal:E2REF0
Ensembl:ENSCAFT00000020868 GeneID:476640 KEGG:cfa:476640
NextBio:20852260 Uniprot:E2REF0
Length = 1107
Score = 233 (87.1 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 451 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 510
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGL+N+
Sbjct: 511 CRRNLTGDVCAVMRVHAFLEQWGLVNY 537
Score = 52 (23.4 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELP 296
D+W V+++V ++++ +CI + LP
Sbjct: 640 DDWNKVSEHVGSRTQDECILHFLRLP 665
Score = 46 (21.3 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 350 QNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHV 391
+N DA+ P A + P S G+ ++ VA ++++V P V
Sbjct: 672 ENSDASLG-PLAYQP--VPFSQSGNPVMSTVAFLASVVDPRV 710
Score = 45 (20.9 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 319 NSLKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEE 358
N EG A + +N+ E + +++E ++ + TEE
Sbjct: 799 NETDEGDKAQ-DGENEKNSEKEQDSEVSEDTKSEEKETEE 837
Score = 38 (18.4 bits), Expect = 6.9e-17, Sum P(3) = 6.9e-17
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 325 QSASSENQNDVKMEDQVHDQMNES---KQNGDAATEEPPAKRK 364
+ A ++ +N+ D+ D NE K+ +E+ ++ K
Sbjct: 791 EKAENKGENETDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEK 833
>UNIPROTKB|G5EF87 [details] [associations]
symbol:swsn-1 "SWI3-like protein" species:6239
"Caenorhabditis elegans" [GO:0042802 "identical protein binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR007526 InterPro:IPR009057
Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934 SMART:SM00717
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0040018
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0046662 GO:GO:0040035
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0040027 GO:GO:0035262
EMBL:AL110477 KO:K11649 GeneTree:ENSGT00390000018166 EMBL:AF230279
PIR:T26449 RefSeq:NP_001256906.1 UniGene:Cel.7072 SMR:G5EF87
IntAct:G5EF87 EnsemblMetazoa:Y113G7B.23 GeneID:180324
KEGG:cel:CELE_Y113G7B.23 CTD:180324 WormBase:Y113G7B.23a
OMA:HFDELEQ NextBio:908892 Uniprot:G5EF87
Length = 789
Score = 216 (81.1 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 38/105 (36%), Positives = 66/105 (62%)
Query: 2 EMPQY-DPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRD 60
E PQ + N + +PS++ WF ++ IH+ E+ A+ EFF+G + S+TP +Y YR+
Sbjct: 67 EAPQLAEGNVIEQTHYIVVPSYAGWFDYNAIHQIEKRAMPEFFNGKNKSKTPDVYVAYRN 126
Query: 61 FMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
FM++ YR P ++ T R++L GDV + ++ L++WGL+N+
Sbjct: 127 FMVDTYRLNPFEYVSATACRRNLAGDVCSIVRLHSFLEQWGLLNY 171
Score = 64 (27.6 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELPFGE-FMMGSAHEMNSSSCPTGS 317
D+W V +V T+++ +C+ K ++LP + ++ + + + P G+
Sbjct: 274 DDWNKVCDHVGTRTQHECVLKFLQLPIQDPYLTENLSSDKAEAAPGGA 321
Score = 45 (20.9 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 352 GDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHV 391
G AA E + P S G+ ++ VA ++++V P V
Sbjct: 319 GGAAKEVLGPLAFQPVPFSQSGNPVMSTVAFLASVVDPQV 358
>WB|WBGene00004203 [details] [associations]
symbol:swsn-1 species:6239 "Caenorhabditis elegans"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IGI;IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IGI;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IGI;IMP] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IGI;IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0046662 "regulation of oviposition" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0035262 "gonad
morphogenesis" evidence=IMP] InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00717 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0046662 GO:GO:0040035
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0040027 GO:GO:0035262
EMBL:AL110477 KO:K11649 UniGene:Cel.7072 GeneID:180324
KEGG:cel:CELE_Y113G7B.23 CTD:180324 RefSeq:NP_001256907.1
ProteinModelPortal:H8ESF3 SMR:H8ESF3 WormBase:Y113G7B.23c
Uniprot:H8ESF3
Length = 792
Score = 216 (81.1 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 38/105 (36%), Positives = 66/105 (62%)
Query: 2 EMPQY-DPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRD 60
E PQ + N + +PS++ WF ++ IH+ E+ A+ EFF+G + S+TP +Y YR+
Sbjct: 67 EAPQLAEGNVIEQTHYIVVPSYAGWFDYNAIHQIEKRAMPEFFNGKNKSKTPDVYVAYRN 126
Query: 61 FMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
FM++ YR P ++ T R++L GDV + ++ L++WGL+N+
Sbjct: 127 FMVDTYRLNPFEYVSATACRRNLAGDVCSIVRLHSFLEQWGLLNY 171
Score = 64 (27.6 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELPFGE-FMMGSAHEMNSSSCPTGS 317
D+W V +V T+++ +C+ K ++LP + ++ + + + P G+
Sbjct: 274 DDWNKVCDHVGTRTQHECVLKFLQLPIQDPYLTENLSSDKAEAAPGGA 321
Score = 45 (20.9 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 352 GDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGPHV 391
G AA E + P S G+ ++ VA ++++V P V
Sbjct: 319 GGAAKEVLGPLAFQPVPFSQSGNPVMSTVAFLASVVDPQV 358
>UNIPROTKB|G4MV88 [details] [associations]
symbol:MGG_01720 "Transcription regulatory protein SWI3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00717 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 EMBL:CM001232 KO:K11649 RefSeq:XP_003714717.1
ProteinModelPortal:G4MV88 EnsemblFungi:MGG_01720T0 GeneID:2679776
KEGG:mgr:MGG_01720 Uniprot:G4MV88
Length = 704
Score = 229 (85.7 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 41/87 (47%), Positives = 60/87 (68%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
+PS++ WF + I+ E+ AL EFF+ + S+TP +YK+YRDFMIN YR P+ LT T
Sbjct: 139 LPSYTVWFDMNAINNIEKKALPEFFNSRNRSKTPAVYKDYRDFMINTYRLNPAEYLTVTA 198
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGLIN+
Sbjct: 199 CRRNLAGDVCAIMRVHAFLEQWGLINY 225
Score = 54 (24.1 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 21/130 (16%), Positives = 53/130 (40%)
Query: 198 CGSCGEQCNSGCY---EYSKGSFV----ICEKCFKNGNYGEDKSKDDFRFSDLGGN---- 246
C +CG+ C Y + G+ V +C C+ + D +D+ + +
Sbjct: 345 CFTCGKDCTREYYHKVQTEGGANVPKKELCPGCYASSRM--DAKEDNMGYEKMENPQYPA 402
Query: 247 SLTHGXXXXXXXXXXXXXSVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAH 306
++ ++ ++ ++W +A +V T+++ +C ++L + + +
Sbjct: 403 TVDREAPWTDEETVRLLEALQKYDEDWGEIANHVGTRTREECALHFLQLDIEDKYLDT-- 460
Query: 307 EMNSSSCPTG 316
E ++ PTG
Sbjct: 461 EPLQANVPTG 470
Score = 41 (19.5 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 337 MEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVGP 389
+ED+ D E Q + T P ++ P S + ++ VA ++T+ P
Sbjct: 453 IEDKYLD--TEPLQ-ANVPTGFPTIGNDKLLPFSHADNPILSVVAFLATLADP 502
>FB|FBgn0002783 [details] [associations]
symbol:mor "moira" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=NAS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS;IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0035060
"brahma complex" evidence=IDA;NAS;TAS] [GO:0003713 "transcription
coactivator activity" evidence=IC] [GO:0005515 "protein binding"
evidence=IPI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=IGI] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0007480 "imaginal disc-derived leg
morphogenesis" evidence=IGI] [GO:0008587 "imaginal disc-derived
wing margin morphogenesis" evidence=IMP] [GO:0008586 "imaginal
disc-derived wing vein morphogenesis" evidence=IMP] [GO:0007474
"imaginal disc-derived wing vein specification" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00717 InterPro:IPR001357 EMBL:AE014297
GO:GO:0045893 GO:GO:0022008 GO:GO:0003677 GO:GO:0008586
GO:GO:0007474 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0007480 SUPFAM:SSF52113 GO:GO:0045749
GO:GO:0043044 GO:GO:0008587 GO:GO:0035060 KO:K11649
GeneTree:ENSGT00390000018166 OMA:QYIQAEP FlyBase:FBgn0002783
EMBL:AF071502 EMBL:BT031130 PIR:T13153 RefSeq:NP_524373.1
UniGene:Dm.2417 SMR:Q9VF03 DIP:DIP-38882N IntAct:Q9VF03
MINT:MINT-6541278 STRING:Q9VF03 EnsemblMetazoa:FBtr0083238
GeneID:41942 KEGG:dme:Dmel_CG18740 UCSC:CG18740-RA CTD:41942
InParanoid:Q9VF03 GenomeRNAi:41942 NextBio:826387 Uniprot:Q9VF03
Length = 1209
Score = 228 (85.3 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 40/87 (45%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
+PS+S+WF ++ IH E+ A+ EFF+ + S+TP+IY YR+FMI+ YR P+ LT T
Sbjct: 452 VPSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTA 511
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGLIN+
Sbjct: 512 CRRNLAGDVCAIMRVHAFLEQWGLINY 538
Score = 57 (25.1 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 269 HGDNWELVAQNVPTKSKLDCISKLIELP 296
H D+W V ++V ++++ +CI + LP
Sbjct: 670 HKDDWNKVCEHVGSRTQDECILHFLRLP 697
Score = 44 (20.5 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 368 PLSDGGSTLIKQVAHISTMVGPHV 391
P S G+ ++ VA ++++V P V
Sbjct: 719 PFSKSGNPIMSTVAFLASVVDPRV 742
Score = 42 (19.8 bits), Expect = 4.7e-17, Sum P(3) = 4.7e-17
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 309 NSSSCPTGSLNSLKEGQS----------ASSENQNDVKMEDQVHDQMNESKQNGDA 354
+S S P+G +++K +S A+S + D+K ED D E+K +A
Sbjct: 869 SSGSSPSGDKSAIKSDKSNKSSPTETAAAASGGEVDIKTEDSSGD--GETKDGTEA 922
Score = 42 (19.8 bits), Expect = 1.6e-15, Sum P(3) = 1.6e-15
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 124 TELKNQVKIEEGAPNGVRVVALPNSLKPISVPNSGADGSGNGKVAVAGETG 174
T + N +K E A G + PN + NSG G+GN K G+ G
Sbjct: 764 TIMDNHLKNVEKASAGGKFN--PN----FGLANSGIAGTGNDKDDEEGKEG 808
Score = 41 (19.5 bits), Expect = 6.0e-17, Sum P(3) = 6.0e-17
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 322 KEGQSASSENQNDVKMED-QVHDQMNESKQN 351
KEG +++S +D +M+D D +SK N
Sbjct: 806 KEGGASASAGGSDEEMKDLSKKDDDAKSKDN 836
Score = 37 (18.1 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 151 PISVPNSGADGSGNGKVAVAG---ETGVKLPPLAS 182
P++VP G N + A A VK LA+
Sbjct: 932 PLAVPKEGTFSENNMQTAAAAALASAAVKAKHLAA 966
>SGD|S000003712 [details] [associations]
symbol:SWI3 "Subunit of the SWI/SNF chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0003682
"chromatin binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA;IMP;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000436 "carbon
catabolite activation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0031496
"positive regulation of mating type switching" evidence=IMP]
[GO:0042393 "histone binding" evidence=IPI] InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433
PROSITE:PS50934 SMART:SM00717 SGD:S000003712 EMBL:BK006943
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0016514
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0005987 GO:GO:0043044
GO:GO:0000436 EMBL:X56792 eggNOG:COG5259 OrthoDB:EOG4PZNGG
GeneTree:ENSGT00390000018166 GO:GO:0044109 GO:GO:0031496
EMBL:M84390 EMBL:Z49451 PIR:S26706 RefSeq:NP_012359.1 PDB:2FQ3
PDBsum:2FQ3 ProteinModelPortal:P32591 SMR:P32591 DIP:DIP-2471N
IntAct:P32591 MINT:MINT-563159 STRING:P32591 PaxDb:P32591
PeptideAtlas:P32591 EnsemblFungi:YJL176C GeneID:853264
KEGG:sce:YJL176C CYGD:YJL176c HOGENOM:HOG000142068 KO:K11772
OMA:ERISENC EvolutionaryTrace:P32591 NextBio:973526
Genevestigator:P32591 GermOnline:YJL176C Uniprot:P32591
Length = 825
Score = 210 (79.0 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 37/94 (39%), Positives = 57/94 (60%)
Query: 12 PEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPS 71
P+ IPS+S WF + IH E +L EFF S+TP++Y YR+FM+N YR P+
Sbjct: 300 PQAHEIVIPSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPN 359
Query: 72 RRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
+ T R+++ GD + L ++ + L +WGLIN+
Sbjct: 360 EYFSVTTARRNVSGDAAALFRLHKFLTKWGLINY 393
Score = 75 (31.5 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 266 VMRHGDNWELVAQNVPTKSKLDCISKLIELPFGE-FMMGSAHEMNSSSCPTGSLNSLKEG 324
+ G +W VA+NV KS CI + ++LP + F+ G + + G L
Sbjct: 539 IQEFGADWYKVAKNVGNKSPEQCILRFLQLPIEDKFLYGDGNGKGDNDNGLGPLKYAPHL 598
Query: 325 QSASSEN 331
+ SEN
Sbjct: 599 PFSKSEN 605
Score = 58 (25.5 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 28/118 (23%), Positives = 45/118 (38%)
Query: 273 WELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEMNSSSCPTGSLN-SLKEGQSASSEN 331
W L+ N SKL + K IE P + H+ P S S++ A +
Sbjct: 388 WGLI--NYQVDSKL--LPKNIEPPLTS-QYSTRHDAPRGLFPFESYKPSVQLPDMAKLKK 442
Query: 332 Q-NDVKMEDQVHDQMNESKQNGDAATEEPPAKRKRIAPLSDGGSTLIKQVAHISTMVG 388
N E ++ + ESK+ D T P +D G + +V+ ++M G
Sbjct: 443 MMNTSDSESTLYKYLKESKRKYDEITHPPSTTDDENGDKNDNGGKMNNEVSTSTSMTG 500
Score = 54 (24.1 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 306 HEMNSSSCPTGSLNSLKEGQSASSENQNDVKMEDQVHDQMNESKQN 351
+E+++S+ TG N L+EG++ S VK+ +Q+ + N SK++
Sbjct: 490 NEVSTSTSMTGDANLLEEGET--SRPLKKVKILEQIDE--NWSKED 531
Score = 43 (20.2 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 128 NQVKIEEGAPNGVRVVALPNSLKPISV 154
N+ IE G + + ++ N +KPIS+
Sbjct: 788 NKPNIETGENHNGQSISNENDVKPISI 814
>UNIPROTKB|I3LJ29 [details] [associations]
symbol:SMARCC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000953 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF04433 PROSITE:PS50934 SMART:SM00298
InterPro:IPR001357 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 SUPFAM:SSF46689 SUPFAM:SSF52113
GeneTree:ENSGT00390000018166 Ensembl:ENSSSCT00000029308 OMA:EWNISEN
Uniprot:I3LJ29
Length = 532
Score = 233 (87.1 bits), Expect = 8.4e-17, P = 8.4e-17
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 342 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 401
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGL+N+
Sbjct: 402 CRRNLTGDVCAVMRVHAFLEQWGLVNY 428
>UNIPROTKB|F1SLI6 [details] [associations]
symbol:LOC100626030 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000953 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF04433 PROSITE:PS50934 SMART:SM00298
InterPro:IPR001357 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 SUPFAM:SSF46689 SUPFAM:SSF52113
GeneTree:ENSGT00390000018166 EMBL:CU633694 EMBL:CU929897
Ensembl:ENSSSCT00000012417 Uniprot:F1SLI6
Length = 1024
Score = 233 (87.1 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQ 78
IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T
Sbjct: 453 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 512
Query: 79 VRKSLVGDVSLLHKVFRLLDEWGLINF 105
R++L GDV + +V L++WGL+N+
Sbjct: 513 CRRNLTGDVCAVMRVHAFLEQWGLVNY 539
>CGD|CAL0003837 [details] [associations]
symbol:orf19.7234 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0000082 "G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0006303 "double-strand
break repair via nonhomologous end joining" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF04433 PROSITE:PS50934
SMART:SM00717 CGD:CAL0003837 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 EMBL:AACQ01000092 eggNOG:COG5259 KO:K11762
RefSeq:XP_715034.1 ProteinModelPortal:Q59ZV7 STRING:Q59ZV7
GeneID:3643306 KEGG:cal:CaO19.7234 Uniprot:Q59ZV7
Length = 561
Score = 190 (71.9 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 36/89 (40%), Positives = 58/89 (65%)
Query: 19 IPSHSSWFRWDDIHETERTALKEFF--DGSSISRTPKIYKEYRDFMINKYREEPSRRLTF 76
+PS + WF IH+ E+ +L +FF DGS ++ + YK RDF++N +R P LT
Sbjct: 65 VPSFAKWFDLSKIHDIEKKSLPDFFVEDGSGY-KSSQDYKYIRDFIVNTFRLNPKEYLTI 123
Query: 77 TQVRKSLVGDVSLLHKVFRLLDEWGLINF 105
T VR++L GDV+ + ++ + L++WGLIN+
Sbjct: 124 TAVRRNLSGDVTNIIRIHQFLEQWGLINY 152
Score = 66 (28.3 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 271 DNWELVAQNVPTKSKLDCISKLIELPFGE-FMMGSAHEMN 309
+ W+ ++++V TK++ CI K I+LP + F+ E N
Sbjct: 348 NQWDKISEHVATKTREQCIIKFIQLPIEDKFLTKLIKEEN 387
Score = 40 (19.1 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 318 LNSLKEGQSASSENQN-DVKMEDQVHDQMNESKQNGD---AATEEPPA 361
+N + + S++ +N D KM+ V + NE+ N + +EP A
Sbjct: 510 INEIHKSVKQSNQTENGDDKMD--VDESSNENDDNTSKLPVSVKEPKA 555
>DICTYBASE|DDB_G0288285 [details] [associations]
symbol:mybX "myb domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF04433 PROSITE:PS50934 SMART:SM00717
dictyBase:DDB_G0288285 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
GenomeReviews:CM000154_GR SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 EMBL:AAFI02000109 RefSeq:XP_636792.1 HSSP:P32591
ProteinModelPortal:Q54J55 PRIDE:Q54J55 EnsemblProtists:DDB0220513
GeneID:8626549 KEGG:ddi:DDB_G0288285 eggNOG:COG5259 OMA:WDLINCF
Uniprot:Q54J55
Length = 1620
Score = 89 (36.4 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 53 KIYKEYRDFMINKYREEPSRRLTFTQVRKSLVG--------DVSLLHKVFRLLDEWGLIN 104
++YK YRD+MI Y++ P + L+ T V+ + ++ + K+F L+ W LIN
Sbjct: 352 ELYKIYRDYMITSYQKNPYQYLSVTDVKNHFINQNKKTFKVNIRSIIKIFDFLEYWDLIN 411
Score = 82 (33.9 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 39/152 (25%), Positives = 58/152 (38%)
Query: 190 LVKLKG--FKCGSCGEQCNSGCYEYSKGS--------------FVICEKCFKNGNYGEDK 233
L+K K F+C C C++ Y+ S +IC CF +GNY
Sbjct: 853 LIKKKKPLFECKKCKADCSNVRYQLVNNSTALDGNILPEYFYPMIICVNCFSSGNYENFI 912
Query: 234 SKDDFRFSDLGGNSLTHGXXXXXXXXXXXXXSVMRHGDNWELVAQNVP-TKSKLDCISKL 292
F+ + G + R DNW+ ++ + +K+ C++
Sbjct: 913 QSSSFQRIEQHQPE-EFGWTDIETLLLLEGIEIFR--DNWQEISDYIGGSKTPEQCLTHF 969
Query: 293 IELPF-GEFMMGSAHEMNSSSCPTGSLNSLKE 323
I LP EF+ E SS P GSL S KE
Sbjct: 970 IRLPIEDEFL-----ERKISSFPVGSL-SKKE 995
Score = 57 (25.1 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 321 LKEGQSASSENQNDVKMEDQVHDQMNESKQNGDAATEEPPAKRKR 365
LKE + E + D + +D+V + E KQ D EE K+++
Sbjct: 1098 LKERED--KEKEEDKEAKDKVDKEKEEDKQKQDKEKEEDKEKQEK 1140
Score = 54 (24.1 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 318 LNSLKEGQSASSENQNDVKM--EDQVHDQMNESKQNGDAATEE 358
LN+L E QS++ +++++ +M ++Q + +ES N ++E
Sbjct: 1302 LNNLSESQSSNDQSKSNEQMSSDNQESKENSESNSNTQITSKE 1344
Score = 50 (22.7 bits), Expect = 5.1e-05, Sum P(4) = 5.1e-05
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 319 NSLKEGQSASSENQNDVKMEDQVHDQMNESKQNG-DAATEE 358
N++ + + E ++E++ +D +E K+NG D EE
Sbjct: 1456 NNVDKNEKDKDEENEMEEVEEEENDLNDEKKENGVDGVGEE 1496
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 24 SWFR-WDDIHETERTALKEFF 43
+WF D+IH+ E L EFF
Sbjct: 275 NWFTSLDNIHQVEINNLPEFF 295
Score = 37 (18.1 bits), Expect = 0.00087, Sum P(4) = 0.00087
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 319 NSLKEGQSASSENQNDVKMEDQVHDQMNESKQ 350
N + + ++ N N+V ++ D+ NE ++
Sbjct: 1442 NDKMDVDNKNNNNNNNVDKNEKDKDEENEMEE 1473
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 440 402 0.00099 117 3 11 23 0.46 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 619 (66 KB)
Total size of DFA: 277 KB (2145 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.10u 0.13s 38.23t Elapsed: 00:00:02
Total cpu time: 38.11u 0.13s 38.24t Elapsed: 00:00:02
Start: Sat May 11 04:20:48 2013 End: Sat May 11 04:20:50 2013