Query 013569
Match_columns 440
No_of_seqs 266 out of 705
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 13:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 2E-42 6.9E-47 293.9 10.2 93 17-109 11-103 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 1.8E-41 6.2E-46 291.8 9.2 95 15-110 11-107 (111)
3 2yus_A SWI/SNF-related matrix- 99.7 6.9E-17 2.4E-21 131.1 9.0 60 249-308 16-75 (79)
4 2elk_A SPCC24B10.08C protein; 99.4 1.9E-13 6.4E-18 104.4 6.2 49 250-298 8-58 (58)
5 1x41_A Transcriptional adaptor 99.3 1.5E-12 5.2E-17 99.8 6.4 50 249-298 6-56 (60)
6 2cqr_A RSGI RUH-043, DNAJ homo 99.2 9.6E-12 3.3E-16 99.4 5.6 62 235-300 5-70 (73)
7 1gvd_A MYB proto-oncogene prot 99.1 8.3E-11 2.8E-15 87.3 6.4 44 251-294 3-47 (52)
8 1guu_A C-MYB, MYB proto-oncoge 99.1 6.9E-11 2.4E-15 87.6 5.6 44 251-294 3-47 (52)
9 2d9a_A B-MYB, MYB-related prot 99.1 1.5E-10 5.1E-15 88.4 7.0 46 249-294 6-52 (60)
10 1w0t_A Telomeric repeat bindin 99.1 1.6E-10 5.6E-15 86.2 5.8 44 251-294 2-48 (53)
11 2yum_A ZZZ3 protein, zinc fing 99.1 8.9E-11 3E-15 93.5 4.4 46 249-294 6-57 (75)
12 2cu7_A KIAA1915 protein; nucle 99.1 2E-10 7E-15 91.0 6.4 46 249-294 7-52 (72)
13 1wgx_A KIAA1903 protein; MYB D 99.1 1.9E-10 6.4E-15 91.8 6.1 46 250-295 7-56 (73)
14 2dim_A Cell division cycle 5-l 99.0 3.8E-10 1.3E-14 88.7 7.6 46 249-294 7-53 (70)
15 3sjm_A Telomeric repeat-bindin 99.0 4.7E-10 1.6E-14 87.2 5.8 45 250-294 10-57 (64)
16 1ity_A TRF1; helix-turn-helix, 99.0 1E-09 3.6E-14 86.1 6.7 45 250-294 9-56 (69)
17 2din_A Cell division cycle 5-l 98.9 1.8E-09 6.3E-14 83.9 5.1 45 249-294 7-51 (66)
18 2eqr_A N-COR1, N-COR, nuclear 98.9 3.8E-09 1.3E-13 81.2 6.5 45 250-294 11-55 (61)
19 2cjj_A Radialis; plant develop 98.8 2.3E-09 7.7E-14 89.4 5.2 46 250-295 7-56 (93)
20 2llk_A Cyclin-D-binding MYB-li 98.8 5E-09 1.7E-13 83.6 6.2 46 249-295 21-66 (73)
21 2ltp_A Nuclear receptor corepr 98.3 5.8E-10 2E-14 92.1 0.0 46 249-294 14-59 (89)
22 1gv2_A C-MYB, MYB proto-oncoge 98.8 1.1E-08 3.7E-13 86.1 6.5 45 250-294 3-48 (105)
23 2k9n_A MYB24; R2R3 domain, DNA 98.8 9.5E-09 3.2E-13 87.0 6.2 43 252-294 2-45 (107)
24 3osg_A MYB21; transcription-DN 98.7 1.3E-08 4.6E-13 88.6 6.1 46 249-294 9-54 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.9E-08 6.6E-13 84.5 5.9 45 250-294 55-99 (105)
26 2k9n_A MYB24; R2R3 domain, DNA 98.7 2E-08 6.9E-13 85.0 5.9 45 250-294 52-96 (107)
27 3osg_A MYB21; transcription-DN 98.7 2.1E-08 7.1E-13 87.4 5.9 45 250-294 61-105 (126)
28 1h8a_C AMV V-MYB, MYB transfor 98.7 3.3E-08 1.1E-12 86.2 7.1 45 250-294 26-71 (128)
29 3zqc_A MYB3; transcription-DNA 98.6 2E-08 6.9E-13 88.0 4.7 44 251-294 2-46 (131)
30 1h8a_C AMV V-MYB, MYB transfor 98.6 5.7E-08 1.9E-12 84.6 7.0 46 250-295 78-123 (128)
31 2ckx_A NGTRF1, telomere bindin 98.6 4E-08 1.4E-12 80.2 5.6 43 252-294 1-48 (83)
32 4gut_A Lysine-specific histone 98.6 8.9E-08 3E-12 106.1 9.6 88 16-109 216-322 (776)
33 2iw5_B Protein corest, REST co 98.6 4.8E-08 1.6E-12 92.9 6.0 45 250-294 132-176 (235)
34 3zqc_A MYB3; transcription-DNA 98.6 6.6E-08 2.3E-12 84.7 6.4 45 250-294 53-97 (131)
35 2yqk_A Arginine-glutamic acid 98.5 1.9E-07 6.7E-12 72.2 6.9 45 249-293 7-52 (63)
36 2z3y_A Lysine-specific histone 98.5 5.5E-08 1.9E-12 105.3 5.3 87 22-110 8-98 (662)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.5 9.3E-08 3.2E-12 76.0 4.8 50 250-301 7-60 (72)
38 1h89_C C-MYB, MYB proto-oncoge 98.4 3.8E-07 1.3E-11 82.1 6.8 46 250-295 109-154 (159)
39 1h89_C C-MYB, MYB proto-oncoge 98.4 4.6E-07 1.6E-11 81.6 6.8 45 250-294 57-102 (159)
40 2roh_A RTBP1, telomere binding 98.3 4.8E-07 1.7E-11 78.8 5.5 46 250-295 30-80 (122)
41 2aje_A Telomere repeat-binding 98.3 4.8E-07 1.6E-11 76.9 5.2 45 250-294 12-61 (105)
42 2xag_B REST corepressor 1; ami 98.3 4.5E-07 1.5E-11 94.9 6.1 45 250-294 379-423 (482)
43 4eef_G F-HB80.4, designed hema 98.3 9.9E-08 3.4E-12 75.8 0.3 43 250-292 19-65 (74)
44 2crg_A Metastasis associated p 98.3 9.9E-07 3.4E-11 69.6 6.0 44 251-294 8-52 (70)
45 2juh_A Telomere binding protei 98.2 7.2E-07 2.5E-11 77.6 4.1 45 250-294 16-65 (121)
46 4a69_C Nuclear receptor corepr 98.2 1.9E-06 6.5E-11 71.8 6.1 43 251-293 43-85 (94)
47 1x58_A Hypothetical protein 49 98.1 3.4E-06 1.2E-10 65.0 5.1 46 250-295 7-55 (62)
48 1ign_A Protein (RAP1); RAP1,ye 97.8 1.4E-05 4.7E-10 76.7 4.6 45 250-294 7-57 (246)
49 2xag_A Lysine-specific histone 97.7 2.9E-05 1E-09 86.9 5.8 87 22-110 179-269 (852)
50 2e5r_A Dystrobrevin alpha; ZZ 97.5 8.3E-05 2.9E-09 57.4 4.7 47 196-242 12-61 (63)
51 2dip_A Zinc finger SWIM domain 97.3 6.9E-05 2.4E-09 62.8 1.8 56 193-258 29-86 (98)
52 2fc7_A ZZZ3 protein; structure 97.2 0.00039 1.3E-08 56.4 4.9 53 193-245 19-77 (82)
53 3hm5_A DNA methyltransferase 1 96.7 0.0021 7.3E-08 53.3 5.6 44 251-294 30-78 (93)
54 1ug2_A 2610100B20RIK gene prod 96.7 0.002 6.7E-08 53.1 4.9 44 252-295 34-80 (95)
55 1fex_A TRF2-interacting telome 96.6 0.0019 6.6E-08 49.1 4.2 44 251-294 2-55 (59)
56 2ebi_A DNA binding protein GT- 96.4 0.0013 4.3E-08 53.2 2.5 45 251-295 4-62 (86)
57 2cuj_A Transcriptional adaptor 96.4 0.0091 3.1E-07 50.8 7.5 70 27-104 37-106 (108)
58 2aqe_A Transcriptional adaptor 96.3 0.0081 2.8E-07 49.4 6.6 70 27-104 19-88 (90)
59 1tot_A CREB-binding protein; z 96.3 0.0018 6.2E-08 48.0 2.3 43 194-242 5-48 (52)
60 2elj_A Transcriptional adapter 96.0 0.017 5.8E-07 47.3 7.0 70 27-103 19-88 (88)
61 2lr8_A CAsp8-associated protei 94.8 0.0015 5.1E-08 51.1 0.0 43 252-295 15-60 (70)
62 1ofc_X ISWI protein; nuclear p 95.7 0.0099 3.4E-07 59.0 5.3 41 252-292 111-152 (304)
63 2xag_B REST corepressor 1; ami 95.5 0.0022 7.6E-08 67.2 0.0 44 251-294 189-232 (482)
64 4iej_A DNA methyltransferase 1 94.4 0.063 2.2E-06 44.4 5.7 44 251-294 30-78 (93)
65 4b4c_A Chromodomain-helicase-D 92.7 0.11 3.8E-06 48.0 5.0 29 251-279 134-163 (211)
66 2xb0_X Chromo domain-containin 92.4 0.079 2.7E-06 51.8 3.6 31 249-279 166-197 (270)
67 1irz_A ARR10-B; helix-turn-hel 90.8 0.41 1.4E-05 36.9 5.4 43 251-293 7-54 (64)
68 4b4c_A Chromodomain-helicase-D 90.5 0.27 9.3E-06 45.3 5.1 41 251-291 7-52 (211)
69 1ofc_X ISWI protein; nuclear p 85.9 0.53 1.8E-05 46.6 4.0 46 250-295 211-272 (304)
70 2y9y_A Imitation switch protei 85.9 0.81 2.8E-05 46.5 5.4 41 252-293 124-166 (374)
71 2y9y_A Imitation switch protei 69.2 4.2 0.00014 41.3 4.6 46 250-295 227-288 (374)
72 2fu4_A Ferric uptake regulatio 66.1 5.2 0.00018 30.7 3.7 49 58-106 18-71 (83)
73 2heo_A Z-DNA binding protein 1 61.7 9.8 0.00034 28.6 4.4 52 52-104 5-56 (67)
74 1mzb_A Ferric uptake regulatio 59.9 11 0.00036 32.1 4.8 48 58-105 19-71 (136)
75 2o03_A Probable zinc uptake re 56.6 15 0.00052 30.9 5.2 54 54-108 8-66 (131)
76 2xig_A Ferric uptake regulatio 51.6 19 0.00063 31.2 5.1 50 56-106 26-80 (150)
77 2w57_A Ferric uptake regulatio 51.4 13 0.00044 32.3 4.0 48 58-105 18-70 (150)
78 2htj_A P fimbrial regulatory p 51.0 18 0.00063 27.5 4.5 46 59-106 2-47 (81)
79 2fe3_A Peroxide operon regulat 46.9 24 0.00081 30.3 5.0 48 58-106 23-75 (145)
80 3mwm_A ZUR, putative metal upt 46.2 25 0.00086 30.0 5.0 51 54-105 11-66 (139)
81 1ign_A Protein (RAP1); RAP1,ye 45.7 29 0.00099 33.2 5.7 23 272-294 173-195 (246)
82 2xb0_X Chromo domain-containin 44.4 34 0.0011 33.2 6.1 42 251-292 3-49 (270)
83 3e7l_A Transcriptional regulat 44.2 17 0.00059 26.7 3.1 27 256-282 18-44 (63)
84 1v5n_A PDI-like hypothetical p 42.1 16 0.00055 29.3 2.9 32 195-226 47-78 (89)
85 3eyy_A Putative iron uptake re 41.6 24 0.00084 30.3 4.2 46 58-105 20-70 (145)
86 4ham_A LMO2241 protein; struct 39.2 55 0.0019 27.4 6.0 57 49-106 11-71 (134)
87 3r0a_A Putative transcriptiona 39.0 52 0.0018 27.2 5.8 50 59-108 28-77 (123)
88 3nis_A E3 ubiquitin-protein li 36.8 22 0.00077 28.4 2.9 38 201-242 11-54 (82)
89 2k4b_A Transcriptional regulat 35.9 53 0.0018 26.6 5.1 42 64-108 43-88 (99)
90 3tqn_A Transcriptional regulat 35.8 50 0.0017 26.9 5.1 54 52-106 12-66 (113)
91 4ets_A Ferric uptake regulatio 35.7 39 0.0013 29.7 4.6 47 58-105 34-87 (162)
92 1qgp_A Protein (double strande 34.2 63 0.0022 24.8 5.1 53 54-106 11-64 (77)
93 1ovx_A ATP-dependent CLP prote 34.1 22 0.00074 27.5 2.3 33 195-227 18-50 (67)
94 3by6_A Predicted transcription 32.9 62 0.0021 27.0 5.3 53 52-105 14-67 (126)
95 3ny3_A E3 ubiquitin-protein li 32.4 29 0.001 27.2 2.9 31 208-242 16-50 (75)
96 2ds5_A CLPX, ATP-dependent CLP 32.2 28 0.00097 25.3 2.6 31 196-226 12-42 (51)
97 1xnl_A ASLV/FP, membrane prote 32.0 19 0.00065 23.1 1.4 21 383-403 7-27 (29)
98 2d1h_A ST1889, 109AA long hypo 31.8 77 0.0026 24.3 5.4 38 72-109 35-72 (109)
99 2ek5_A Predicted transcription 29.6 53 0.0018 27.6 4.3 54 52-106 7-61 (129)
100 2olm_A Nucleoporin-like protei 29.3 69 0.0024 27.9 5.0 56 195-263 25-81 (140)
101 2vn2_A DNAD, chromosome replic 29.0 58 0.002 27.2 4.4 41 69-109 47-87 (128)
102 2oqg_A Possible transcriptiona 28.9 91 0.0031 24.5 5.5 48 58-108 22-69 (114)
103 2p57_A GTPase-activating prote 28.6 28 0.00095 30.7 2.3 58 194-262 36-94 (144)
104 2pjp_A Selenocysteine-specific 28.3 90 0.0031 25.7 5.5 51 51-103 60-110 (121)
105 2x4h_A Hypothetical protein SS 28.1 98 0.0034 25.2 5.7 54 51-107 12-65 (139)
106 1qbj_A Protein (double-strande 27.8 83 0.0028 24.6 4.8 48 59-106 12-60 (81)
107 3eco_A MEPR; mutlidrug efflux 27.8 81 0.0028 25.5 5.1 44 67-110 41-84 (139)
108 3bro_A Transcriptional regulat 26.8 79 0.0027 25.5 4.8 41 69-109 46-86 (141)
109 2crr_A Stromal membrane-associ 26.7 46 0.0016 29.1 3.4 84 195-294 29-119 (141)
110 1weo_A Cellulose synthase, cat 26.5 37 0.0013 27.7 2.5 31 195-225 16-51 (93)
111 2dk5_A DNA-directed RNA polyme 26.4 74 0.0025 25.4 4.4 35 70-104 33-67 (91)
112 2b0l_A GTP-sensing transcripti 26.2 52 0.0018 26.6 3.5 53 53-107 22-77 (102)
113 2frh_A SARA, staphylococcal ac 25.4 1.4E+02 0.0047 24.2 6.1 42 69-110 49-90 (127)
114 3cuo_A Uncharacterized HTH-typ 25.1 1.1E+02 0.0037 23.2 5.1 49 58-108 25-73 (99)
115 1kkx_A Transcription regulator 25.0 30 0.001 29.4 1.9 45 261-306 52-106 (123)
116 1bja_A Transcription regulator 24.4 75 0.0026 25.9 4.1 35 68-104 27-62 (95)
117 2d8v_A Zinc finger FYVE domain 24.3 97 0.0033 23.9 4.4 44 195-241 8-52 (67)
118 3neu_A LIN1836 protein; struct 24.2 77 0.0026 26.3 4.3 53 53-106 17-70 (125)
119 4b8x_A SCO5413, possible MARR- 24.0 84 0.0029 26.3 4.6 43 68-110 46-88 (147)
120 2owa_A Arfgap-like finger doma 23.9 56 0.0019 28.5 3.4 56 195-262 36-92 (138)
121 1umq_A Photosynthetic apparatu 23.7 56 0.0019 25.7 3.1 28 254-281 38-65 (81)
122 2kj5_A Phage integrase; GFT PS 23.4 50 0.0017 25.6 2.8 40 69-108 46-97 (116)
123 1oyi_A Double-stranded RNA-bin 23.2 1.3E+02 0.0044 23.9 5.2 49 57-108 17-65 (82)
124 1y0u_A Arsenical resistance op 22.8 1.2E+02 0.0043 23.3 5.1 45 58-106 32-76 (96)
125 3c7j_A Transcriptional regulat 22.8 40 0.0014 31.2 2.4 58 49-107 26-83 (237)
126 2kj8_A Putative prophage CPS-5 22.6 1.1E+02 0.0039 23.9 4.9 48 58-105 34-93 (118)
127 1sfx_A Conserved hypothetical 22.6 1.1E+02 0.0039 23.2 4.8 36 73-108 34-69 (109)
128 3dpt_A ROCO, RAB family protei 22.3 77 0.0026 31.3 4.5 58 50-109 13-74 (332)
129 2jt1_A PEFI protein; solution 22.3 1.7E+02 0.0057 22.6 5.6 55 53-107 4-58 (77)
130 1lva_A Selenocysteine-specific 22.1 1.4E+02 0.0047 27.9 6.1 54 51-104 135-188 (258)
131 1ntc_A Protein (nitrogen regul 21.8 59 0.002 25.5 3.0 26 256-281 50-75 (91)
132 1ub9_A Hypothetical protein PH 21.8 1.4E+02 0.0048 22.5 5.2 49 58-108 17-65 (100)
133 2cor_A Pinch protein; LIM doma 21.8 42 0.0014 25.5 2.0 32 193-226 39-70 (79)
134 1cf7_A Protein (transcription 21.4 1.5E+02 0.0051 23.0 5.1 48 56-104 14-62 (76)
135 1ngr_A P75 low affinity neurot 21.1 28 0.00097 27.6 0.9 22 256-282 12-33 (85)
136 1v4r_A Transcriptional repress 20.9 30 0.001 27.4 1.0 54 51-105 13-67 (102)
137 3i4p_A Transcriptional regulat 20.9 58 0.002 28.1 3.0 38 257-295 3-41 (162)
138 1sd4_A Penicillinase repressor 20.8 1E+02 0.0035 24.7 4.3 44 62-108 16-63 (126)
139 2co8_A NEDD9 interacting prote 20.6 50 0.0017 25.2 2.2 34 193-226 40-74 (82)
140 3sub_A ADP-ribosylation factor 20.4 58 0.002 29.3 2.9 56 195-262 22-78 (163)
141 2k02_A Ferrous iron transport 20.4 1.5E+02 0.005 23.7 5.0 41 62-104 7-47 (87)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=2e-42 Score=293.88 Aligned_cols=93 Identities=38% Similarity=0.746 Sum_probs=84.7
Q ss_pred EecCCCCCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHH
Q 013569 17 YTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRL 96 (440)
Q Consensus 17 ivIPsy~~WF~~~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~F 96 (440)
=.-|+|++||+|++||+|||++|||||+|++++|||++||+|||+||++||+||.+|||+|+||++|+|||++|+|||+|
T Consensus 11 ~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~F 90 (104)
T 2fq3_A 11 GMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKF 90 (104)
T ss_dssp ------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHH
T ss_pred CCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCCC
Q 013569 97 LDEWGLINFGAVS 109 (440)
Q Consensus 97 Le~wGlINy~~~~ 109 (440)
||+|||||||+++
T Consensus 91 Le~wGLIN~~v~~ 103 (104)
T 2fq3_A 91 LTKWGLINYQVDS 103 (104)
T ss_dssp HHHTTSSSSCC--
T ss_pred HHHcCeeccCCCC
Confidence 9999999999997
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=291.76 Aligned_cols=95 Identities=29% Similarity=0.515 Sum_probs=92.4
Q ss_pred eeEecCCCCCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhc--cchHHHHHH
Q 013569 15 ELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VGDVSLLHK 92 (440)
Q Consensus 15 ~~ivIPsy~~WF~~~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l--~gDv~~i~R 92 (440)
++++||+|++||++++||+|||++|||||+|+ ++|||++||+|||+||++||+||.+|||+|+||++| +|||++|+|
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~R 89 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGR 89 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHH
Confidence 57999999999999999999999999999998 799999999999999999999999999999999999 699999999
Q ss_pred HHHHhhhhccccccCCCC
Q 013569 93 VFRLLDEWGLINFGAVSR 110 (440)
Q Consensus 93 ih~FLe~wGlINy~~~~~ 110 (440)
||+|||+|||||||+++.
T Consensus 90 Vh~FLe~wGLIN~~~~~~ 107 (111)
T 2dce_A 90 IHTYLELIGAINFGCEQA 107 (111)
T ss_dssp HHHHHHHHSSSSCSCTTS
T ss_pred HHHHHHHcCeeecCCChh
Confidence 999999999999999984
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.68 E-value=6.9e-17 Score=131.06 Aligned_cols=60 Identities=32% Similarity=0.634 Sum_probs=56.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHcCCcCCCCCCCcccC
Q 013569 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEM 308 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flqLPIeD~fL~~~~~~ 308 (440)
.....||.+|+++||++|++||++|.+||++||+||+.||+.||+++||+|+|+...++.
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~~ 75 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSG 75 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCCC
Confidence 446789999999999999999999999999999999999999999999999999987643
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.42 E-value=1.9e-13 Score=104.35 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCC-CCCHHHHHHHHHcCCcC
Q 013569 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVP-TKSKLDCISKLIELPFG 298 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~Vg-tKT~~eCi~~flqLPIe 298 (440)
....||.+|+.+||++|++|| ++|.+||++|+ +||+.||+.||.+++|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 367899999999999999999 99999999999 99999999999987763
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=1.5e-12 Score=99.83 Aligned_cols=50 Identities=36% Similarity=0.627 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHcCCcC
Q 013569 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIELPFG 298 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~flqLPIe 298 (440)
.....||.+|+.+||++|++|| ++|.+||++|++||+.||+.||.++.+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3467899999999999999999 8999999999999999999999976553
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.22 E-value=9.6e-12 Score=99.35 Aligned_cols=62 Identities=26% Similarity=0.391 Sum_probs=51.0
Q ss_pred CCCceeccCCCCCCCCCCCCCHHHHHHHHHHHHHcC----CCHHHHHhHCCCCCHHHHHHHHHcCCcCCC
Q 013569 235 KDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIELPFGEF 300 (440)
Q Consensus 235 ~~df~~i~~~~~~~~~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~VgtKT~~eCi~~flqLPIeD~ 300 (440)
..++.+.+... .....||.+|+.+|+++|.+|| ++|.+||++|++||..||+.||..| ++|.
T Consensus 5 ~~~~~~~~~~~---~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~ 70 (73)
T 2cqr_A 5 SSGSLRKERAR---SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGP 70 (73)
T ss_dssp SSSCCCCCTTT---CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSC
T ss_pred ccccccccccc---cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHcc
Confidence 34555555443 3567899999999999999999 6899999999999999999999875 4443
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.12 E-value=8.3e-11 Score=87.30 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 251 GATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
...||.+|+.+|+++|++|| .+|..||+++++||..||..||..
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHH
Confidence 56899999999999999999 589999999999999999999985
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.11 E-value=6.9e-11 Score=87.65 Aligned_cols=44 Identities=23% Similarity=0.599 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHhHCCCCCHHHHHHHHHc
Q 013569 251 GATWTEAETLLLLESVMRHGD-NWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~-nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
...||.+|+.+|+++|++||. +|..||+++++||+.||..||..
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 568999999999999999995 99999999999999999999975
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=1.5e-10 Score=88.38 Aligned_cols=46 Identities=22% Similarity=0.552 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
.....||.+|+.+|+++|++|| .+|..||+++++||..||..||..
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLR 52 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 3467899999999999999999 699999999999999999999985
No 10
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.07 E-value=1.6e-10 Score=86.18 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCC--CCCHHHHHHHHHc
Q 013569 251 GATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 294 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~Vg--tKT~~eCi~~flq 294 (440)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..||..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 48 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 46899999999999999999 79999999999 9999999999975
No 11
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.9e-11 Score=93.54 Aligned_cols=46 Identities=15% Similarity=0.332 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC------CCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 249 THGATWTEAETLLLLESVMRHG------DNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g------~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
.....||.+|+.+|+++|++|| .+|..||++|++||..||+.||.+
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQK 57 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 3467899999999999999999 799999999999999999999964
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.06 E-value=2e-10 Score=90.95 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
.....||.+|+.+|+++|++||.+|..||++|++||..||..||..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~ 52 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQ 52 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999874
No 13
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.05 E-value=1.9e-10 Score=91.77 Aligned_cols=46 Identities=26% Similarity=0.347 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHhHCCCCCHHHHHHHHHcC
Q 013569 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIEL 295 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~VgtKT~~eCi~~flqL 295 (440)
....||.+|+.+|.+||..|+ ++|++||++||+||++||+.||..|
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999998 5799999999999999999999976
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3.8e-10 Score=88.75 Aligned_cols=46 Identities=28% Similarity=0.588 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 249 THGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
.....||.+|+.+|+++|++|| ++|..||++|++||..||..||.+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE 53 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 3467899999999999999999 899999999999999999999985
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.99 E-value=4.7e-10 Score=87.24 Aligned_cols=45 Identities=20% Similarity=0.432 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCC--CCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~Vg--tKT~~eCi~~flq 294 (440)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..||..
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~n 57 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHH
Confidence 356899999999999999999 79999999987 8999999999975
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.96 E-value=1e-09 Score=86.09 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCC--CCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~Vg--tKT~~eCi~~flq 294 (440)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..||..
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 56 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 467899999999999999999 79999999999 9999999999985
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.8e-09 Score=83.88 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
.....||.+|+.+|+++++.||.+|.+||+.+ +||..||..||..
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~ 51 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEF 51 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHH
Confidence 34678999999999999999999999999955 5999999999985
No 18
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=3.8e-09 Score=81.21 Aligned_cols=45 Identities=24% Similarity=0.439 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
....||.+|..++++++.+||.+|..||++|++||..||+.+|..
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999963
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.84 E-value=2.3e-09 Score=89.41 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHhHCCCCCHHHHHHHHHcC
Q 013569 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIEL 295 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~VgtKT~~eCi~~flqL 295 (440)
....||.+|+.+|+++|.+|| +.|.+||++|++||.+||+.||..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999997 5799999999999999999999875
No 20
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.82 E-value=5e-09 Score=83.61 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHcC
Q 013569 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flqL 295 (440)
.....||.+|+.+|++++++||.+|..||+++ +||..||..||..|
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999 99999999999864
No 21
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.28 E-value=5.8e-10 Score=92.06 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
...+.||.+|+.+|++++++||.+|..||++|++||..||..||..
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~ 59 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFN 59 (89)
Confidence 4467899999999999999999999999999999999999999974
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.75 E-value=1.1e-08 Score=86.10 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
..+.||.+|+.+|+++|++|| ++|..||++|++||..||..||..
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 48 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHh
Confidence 367899999999999999999 589999999999999999999986
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.75 E-value=9.5e-09 Score=87.03 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 252 ATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
..||.+|+.+|+++|++|| ++|..||++|++||+.||..||.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 5799999999999999999 599999999999999999999985
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.71 E-value=1.3e-08 Score=88.59 Aligned_cols=46 Identities=22% Similarity=0.556 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 249 THGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
.....||.+|+.+|+++|++||.+|..||+++++||..||..||.+
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh
Confidence 3467899999999999999999999999999999999999999985
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.68 E-value=1.9e-08 Score=84.51 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
....||.+|+.+|++++.+||.+|..||++|++||..||..||..
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999975
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.67 E-value=2e-08 Score=84.99 Aligned_cols=45 Identities=16% Similarity=0.384 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
..+.||.+|+.+|++++.+||.+|..||++|++||..+|..||..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 96 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMM 96 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999975
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.67 E-value=2.1e-08 Score=87.40 Aligned_cols=45 Identities=20% Similarity=0.558 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
..+.||.+|+.+|++++++||.+|..||++|++||..+|..||..
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999975
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.67 E-value=3.3e-08 Score=86.15 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 467899999999999999999 589999999999999999999986
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.63 E-value=2e-08 Score=87.98 Aligned_cols=44 Identities=30% Similarity=0.538 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 251 GATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
.+.||.+|+.+|+++|++|| ++|..||++|++||..||..||.+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN 46 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh
Confidence 46799999999999999999 899999999999999999999985
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.61 E-value=5.7e-08 Score=84.61 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHcC
Q 013569 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flqL 295 (440)
..+.||.+|+.+|++++++||.+|..||++|++||..+|..||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999754
No 31
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.61 E-value=4e-08 Score=80.19 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHhH----CCCCCHHHHHHHHHc
Q 013569 252 ATWTEAETLLLLESVMRHG-DNWELVAQN----VPTKSKLDCISKLIE 294 (440)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~----VgtKT~~eCi~~flq 294 (440)
..||.+|+..|+++|++|| |+|.+|+++ +.+||..+|..||..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrn 48 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 48 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHH
Confidence 3699999999999999999 699999996 789999999999975
No 32
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.59 E-value=8.9e-08 Score=106.06 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=76.1
Q ss_pred eEecCCCCCCCCC------------CCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhc
Q 013569 16 LYTIPSHSSWFRW------------DDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL 83 (440)
Q Consensus 16 ~ivIPsy~~WF~~------------~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l 83 (440)
...+..|..+|-. +.|+..|+..||||.. .+.+||.|||.|+.+|+.||...||...|++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~------~~~~yl~irn~il~~w~~np~~~l~~~~~~~~~ 289 (776)
T 4gut_A 216 VPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSR------DPTMYLALRNLILALWYTNCKEALTPQKCIPHI 289 (776)
T ss_dssp --CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSS------CCHHHHHHHHHHHHHHHHCTTSCCCHHHHGGGC
T ss_pred ccccccccccccCCCccccchhcCCCcCChHHHHhChHHHh------cCceeeeehHHHHHHHHHCCceeeeHHHhhhhc
Confidence 4567778889966 9999999999999964 457999999999999999999999999998876
Q ss_pred c-------chHHHHHHHHHHhhhhccccccCCC
Q 013569 84 V-------GDVSLLHKVFRLLDEWGLINFGAVS 109 (440)
Q Consensus 84 ~-------gDv~~i~Rih~FLe~wGlINy~~~~ 109 (440)
. .++..+.+|++||.++|+||+++..
T Consensus 290 ~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (776)
T 4gut_A 290 IVRGLVRIRCVQEVERILYFMTRKGLINTGVLS 322 (776)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTCC
T ss_pred ccccccccccHHHHHHHHHHHHHhhhhhccccc
Confidence 3 3567789999999999999998864
No 33
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.58 E-value=4.8e-08 Score=92.88 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
....||++|..++++|+.+||.||..||++||+||..||+.||..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 176 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999973
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.57 E-value=6.6e-08 Score=84.66 Aligned_cols=45 Identities=16% Similarity=0.425 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
..+.||.+|+.+|++++.+||.+|..||++|++||..+|..||..
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 97 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999975
No 35
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.9e-07 Score=72.16 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHhH-CCCCCHHHHHHHHH
Q 013569 249 THGATWTEAETLLLLESVMRHGDNWELVAQN-VPTKSKLDCISKLI 293 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~-VgtKT~~eCi~~fl 293 (440)
.....||++|..++++|+.+||.||..|+++ |++||..||+.+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3467899999999999999999999999996 99999999999995
No 36
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.51 E-value=5.5e-08 Score=105.33 Aligned_cols=87 Identities=26% Similarity=0.478 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhh----ccchHHHHHHHHHHh
Q 013569 22 HSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKS----LVGDVSLLHKVFRLL 97 (440)
Q Consensus 22 y~~WF~~~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~----l~gDv~~i~Rih~FL 97 (440)
+++.|+.+.+|+.|+.+|||+..+. ..+...||.|||.|+.+|+.||..+||..+|... +..|...|.+|++|+
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~~--~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~ 85 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 85 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGGCHHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcCc--hHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccCChHHHHHHHHHH
Confidence 4578999999999999999997642 1234689999999999999999999999999544 446889999999999
Q ss_pred hhhccccccCCCC
Q 013569 98 DEWGLINFGAVSR 110 (440)
Q Consensus 98 e~wGlINy~~~~~ 110 (440)
.++|.||+++...
T Consensus 86 ~~~~~~~~~~~~~ 98 (662)
T 2z3y_A 86 ERHGLINFGIYKR 98 (662)
T ss_dssp HHTTSSSCSSCBC
T ss_pred HHHHHHhcCCccc
Confidence 9999999887753
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.50 E-value=9.3e-08 Score=76.02 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHhHCCCCCHHHHHHHHHcCCcCCCC
Q 013569 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIELPFGEFM 301 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~VgtKT~~eCi~~flqLPIeD~f 301 (440)
....||.+|+.+|..++.+|+ +.|++||+++ +||.+||+.||..| .+|..
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L-~~d~~ 60 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL-KDSVT 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH-HHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH-HHhcC
Confidence 356899999999999999998 5699999999 59999999999987 66643
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.39 E-value=3.8e-07 Score=82.12 Aligned_cols=46 Identities=20% Similarity=0.429 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHcC
Q 013569 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 295 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flqL 295 (440)
....||.+|+.+|++++.+||.+|..||++|++||..+|..||..|
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999864
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.38 E-value=4.6e-07 Score=81.59 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
....||.+|+.+|+++|++|| .+|..||+++++||..||..||..
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 102 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence 367899999999999999999 589999999999999999999985
No 40
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.33 E-value=4.8e-07 Score=78.79 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHC----CCCCHHHHHHHHHcC
Q 013569 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIEL 295 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~V----gtKT~~eCi~~flqL 295 (440)
....||.+|+..|+++|++|| |+|.+|+++. .+||..+|..+|..|
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 367899999999999999999 7999999985 689999999999753
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.32 E-value=4.8e-07 Score=76.92 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHC----CCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~V----gtKT~~eCi~~flq 294 (440)
....||.+|+..|+++|++|| ++|.+|++.. .+||..+|..+|..
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrn 61 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKT 61 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 467899999999999999999 6999999976 68999999999975
No 42
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.32 E-value=4.5e-07 Score=94.94 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
....||.+|.+++|+||.+||.||..||++|||||..||+.||..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999973
No 43
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.29 E-value=9.9e-08 Score=75.80 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHhHCCCCCHHHHHHHH
Q 013569 250 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKL 292 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~VgtKT~~eCi~~f 292 (440)
....||.+|..+|..||.+|+ +.|++||+.||+||++||+.||
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 356899999999999999998 4799999999999999999998
No 44
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.29 E-value=9.9e-07 Score=69.61 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhH-CCCCCHHHHHHHHHc
Q 013569 251 GATWTEAETLLLLESVMRHGDNWELVAQN-VPTKSKLDCISKLIE 294 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~-VgtKT~~eCi~~flq 294 (440)
...||++|..++.+|+.+||.||..|+++ |++||..||+.+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 46899999999999999999999999995 999999999999963
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.22 E-value=7.2e-07 Score=77.60 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHhHC----CCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~V----gtKT~~eCi~~flq 294 (440)
....||.+|+..|+++|++|| ++|.+|+++. .+||..+|..||..
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrn 65 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 65 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHH
Confidence 467899999999999999999 6999999995 68999999999975
No 46
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.20 E-value=1.9e-06 Score=71.78 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHH
Q 013569 251 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLI 293 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~fl 293 (440)
...||++|..++.+++.+||.+|..||++|++||..||+++|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHh
Confidence 3579999999999999999999999999999999999999996
No 47
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.09 E-value=3.4e-06 Score=65.04 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHh---HCCCCCHHHHHHHHHcC
Q 013569 250 HGATWTEAETLLLLESVMRHGDNWELVAQ---NVPTKSKLDCISKLIEL 295 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~---~VgtKT~~eCi~~flqL 295 (440)
....||.+|+..|+++|++||.+|.+|+. ++..||.-.-..+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 46789999999999999999999999994 66789999999998654
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.80 E-value=1.4e-05 Score=76.75 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC------HHHHHhHCCCCCHHHHHHHHHc
Q 013569 250 HGATWTEAETLLLLESVMRHGDN------WELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g~n------W~~Ia~~VgtKT~~eCi~~flq 294 (440)
....||.+|+.+||+++++||.. |..||+++++||..+|..||..
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~ 57 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV 57 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 35789999999999999999853 9999999999999999999974
No 49
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.68 E-value=2.9e-05 Score=86.86 Aligned_cols=87 Identities=26% Similarity=0.471 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHH----hhccchHHHHHHHHHHh
Q 013569 22 HSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVR----KSLVGDVSLLHKVFRLL 97 (440)
Q Consensus 22 y~~WF~~~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r----~~l~gDv~~i~Rih~FL 97 (440)
|.++++.+.+|..|+.+|+++-..- .....+|+.+||.|+..|+.||...++...|. |.+..|...|.+|++|+
T Consensus 179 ~~~r~p~~~~~~~e~~~f~~~~~~~--~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~~p~~i~~~~~~~ 256 (852)
T 2xag_A 179 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 256 (852)
T ss_dssp HTTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTSCHHHHHHHHHHH
T ss_pred HHhcCCCcccChHHHHHHHHHHHhh--hhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccCCcHHHHHHHHHH
Confidence 6689999999999999999986531 11356899999999999999999999987774 44457899999999999
Q ss_pred hhhccccccCCCC
Q 013569 98 DEWGLINFGAVSR 110 (440)
Q Consensus 98 e~wGlINy~~~~~ 110 (440)
.+|++||+++...
T Consensus 257 ~~~~~~~~~~~~~ 269 (852)
T 2xag_A 257 ERHGLINFGIYKR 269 (852)
T ss_dssp HHTTSSSCSSCBC
T ss_pred HHHHHHhcCcccc
Confidence 9999999888753
No 50
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.53 E-value=8.3e-05 Score=57.42 Aligned_cols=47 Identities=17% Similarity=0.516 Sum_probs=40.0
Q ss_pred ccCCCCCCC-CCCceeEecC-CCcccchhhhhcCCCC-CCCCCCCceecc
Q 013569 196 FKCGSCGEQ-CNSGCYEYSK-GSFVICEKCFKNGNYG-EDKSKDDFRFSD 242 (440)
Q Consensus 196 ~~C~~Cg~d-c~~~~y~~~k-~~~~LC~~CF~~G~~~-~~~s~~df~~i~ 242 (440)
..|+.|+.. +...||+|+. .+++||..||..|... .|...|.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 789999986 8889999999 8999999999999754 455688887764
No 51
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.30 E-value=6.9e-05 Score=62.83 Aligned_cols=56 Identities=21% Similarity=0.646 Sum_probs=44.1
Q ss_pred cCCccCCCCCC-CCCCceeEecC-CCcccchhhhhcCCCCCCCCCCCceeccCCCCCCCCCCCCCHHH
Q 013569 193 LKGFKCGSCGE-QCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAE 258 (440)
Q Consensus 193 ~~~~~C~~Cg~-dc~~~~y~~~k-~~~~LC~~CF~~G~~~~~~s~~df~~i~~~~~~~~~~~~WT~~E 258 (440)
.....|+.|+. .+...||+|.. .+++||..||..|. | ..|.|.++... ...|+..|
T Consensus 29 H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~---H-~~H~f~~i~~~------~~~w~~~e 86 (98)
T 2dip_A 29 HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC---H-LSHTFTFREKR------NQKWRSLE 86 (98)
T ss_dssp CCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS---G-GGSCEEECCSS------SCCCEECC
T ss_pred cCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC---C-CCCCeeEecCC------CCCCcccc
Confidence 34588999997 57789999998 89999999999995 3 57999887653 23576544
No 52
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.17 E-value=0.00039 Score=56.40 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=43.3
Q ss_pred cCCccCCCCCC-CCCCceeEecC-CC---cccchhhhhcCCCC-CCCCCCCceeccCCC
Q 013569 193 LKGFKCGSCGE-QCNSGCYEYSK-GS---FVICEKCFKNGNYG-EDKSKDDFRFSDLGG 245 (440)
Q Consensus 193 ~~~~~C~~Cg~-dc~~~~y~~~k-~~---~~LC~~CF~~G~~~-~~~s~~df~~i~~~~ 245 (440)
...+.|+.|+. .+...||+|.. .+ ++||..||..|... .|...|.|..+....
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~ 77 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSS 77 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCC
Confidence 44678999997 57779999998 66 99999999999754 455789999887654
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.70 E-value=0.0021 Score=53.30 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhHC-----CCCCHHHHHHHHHc
Q 013569 251 GATWTEAETLLLLESVMRHGDNWELVAQNV-----PTKSKLDCISKLIE 294 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~V-----gtKT~~eCi~~flq 294 (440)
...||.+|+..|++.+++|+-.|-.|++.. ++||-++-..||-.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~ 78 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHH
Confidence 378999999999999999999999999998 47999999999975
No 54
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.65 E-value=0.002 Score=53.10 Aligned_cols=44 Identities=18% Similarity=0.450 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHhHCCCCCHHHHHHHHHcC
Q 013569 252 ATWTEAETLLLLESVMRHG---DNWELVAQNVPTKSKLDCISKLIEL 295 (440)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g---~nW~~Ia~~VgtKT~~eCi~~flqL 295 (440)
--||.+|+..+|.+-++-| +-|..||+.+|+||++|...||-+|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4699999999999999998 5999999999999999999999874
No 55
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.58 E-value=0.0019 Score=49.07 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHc--------C-CCHHHHHh-HCCCCCHHHHHHHHHc
Q 013569 251 GATWTEAETLLLLESVMRH--------G-DNWELVAQ-NVPTKSKLDCISKLIE 294 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~--------g-~nW~~Ia~-~VgtKT~~eCi~~flq 294 (440)
...||.+|+..|++.|.+| | .-|+++++ .+..+|-+.|+.||++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 3579999999999999999 3 36999999 8999999999999985
No 56
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.43 E-value=0.0013 Score=53.20 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC----------CCHHHHHhHCC----CCCHHHHHHHHHcC
Q 013569 251 GATWTEAETLLLLESVMRHG----------DNWELVAQNVP----TKSKLDCISKLIEL 295 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g----------~nW~~Ia~~Vg----tKT~~eCi~~flqL 295 (440)
...||.+|+++||++..... .-|+.||+.+. .||+.||..+|-.|
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45799999999999996532 27999999875 79999999999764
No 57
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=96.37 E-value=0.0091 Score=50.79 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=60.9
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 013569 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (440)
Q Consensus 27 ~~~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 104 (440)
+.+-+|+-|++..-.. .=.|..||.+...||.-...+. .++.++||+.+.-|++-..||+.||.+.|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~kID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHTSCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhcccHHHHHHHHHHHHHcCCCC
Confidence 4568899999988766 3479999999999999986543 39999999999999999999999999999985
No 58
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=96.30 E-value=0.0081 Score=49.38 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=61.1
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 013569 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (440)
Q Consensus 27 ~~~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 104 (440)
+.+-+|+-|++..-.. .=.|..||.+...||.-...+.. ++.++||..+.-|++-..||+.||.+.|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g~--l~k~da~~~~kiD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQGG--LRLAQARALIKIDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHSC--CCHHHHHTTSSSSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Confidence 4668899999988765 34799999999999998866543 8999999999999999999999999999996
No 59
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=96.27 E-value=0.0018 Score=48.05 Aligned_cols=43 Identities=9% Similarity=0.368 Sum_probs=35.7
Q ss_pred CCccCCCCCCCCCCceeEecC-CCcccchhhhhcCCCCCCCCCCCceecc
Q 013569 194 KGFKCGSCGEQCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRFSD 242 (440)
Q Consensus 194 ~~~~C~~Cg~dc~~~~y~~~k-~~~~LC~~CF~~G~~~~~~s~~df~~i~ 242 (440)
..+.|+.|+..+ ..||+|+. .+++||..||..|.- .|.+.++.
T Consensus 5 ~~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~H-----~H~m~~~~ 48 (52)
T 1tot_A 5 FVYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKSH-----THKMVKWG 48 (52)
T ss_dssp SCEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHCC-----CSSEEEEC
T ss_pred CEEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCCC-----CCceEEec
Confidence 357899999985 68999999 899999999999862 47777764
No 60
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.017 Score=47.27 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=60.6
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccc
Q 013569 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLI 103 (440)
Q Consensus 27 ~~~~ih~iEk~~lpefF~g~~~~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlI 103 (440)
+.+-.|+-|++..-.. .=.|..|+.+.+.||.-...+ ...++.++||+.+.-|++-..||++||.+.|+|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLNIDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 5668899999887665 347999999999999988764 346899999999999999999999999999987
No 61
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.81 E-value=0.0015 Score=51.07 Aligned_cols=43 Identities=16% Similarity=0.376 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHcCC---CHHHHHhHCCCCCHHHHHHHHHcC
Q 013569 252 ATWTEAETLLLLESVMRHGD---NWELVAQNVPTKSKLDCISKLIEL 295 (440)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g~---nW~~Ia~~VgtKT~~eCi~~flqL 295 (440)
--||.+|+..+|...++-|. -|..||+.+ +||++|...||.+|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 46999999999999999994 999999999 79999999999885
No 62
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.70 E-value=0.0099 Score=59.04 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHH
Q 013569 252 ATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKL 292 (440)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~f 292 (440)
..||..+-..++.|.++|| ++|..||..|++||++|...++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4799999999999999999 8999999999999999996655
No 63
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.54 E-value=0.0022 Score=67.24 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhHCCCCCHHHHHHHHHc
Q 013569 251 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
...||.+|..++.+++.+||.||..|+++|++||..+|+.+|..
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp --------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhcc
Confidence 45899999999999999999999999999999999999999874
No 64
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.41 E-value=0.063 Score=44.43 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHhHCC-----CCCHHHHHHHHHc
Q 013569 251 GATWTEAETLLLLESVMRHGDNWELVAQNVP-----TKSKLDCISKLIE 294 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~Vg-----tKT~~eCi~~flq 294 (440)
...||.+|+..|++.+++|+-.|--|++.-. .||-++-..||.+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~ 78 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999998763 6999999999974
No 65
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.67 E-value=0.11 Score=47.97 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHhH
Q 013569 251 GATWTEAETLLLLESVMRHG-DNWELVAQN 279 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~ 279 (440)
...||.+|+..||-||.+|| |+|+.|-.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 56799999999999999999 999999764
No 66
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.36 E-value=0.079 Score=51.75 Aligned_cols=31 Identities=26% Similarity=0.594 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHhH
Q 013569 249 THGATWTEAETLLLLESVMRHG-DNWELVAQN 279 (440)
Q Consensus 249 ~~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~ 279 (440)
.....|+.+|+..||-||.+|| |+|+.|..-
T Consensus 166 ~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 166 NWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 3457899999999999999999 999999653
No 67
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=90.77 E-value=0.41 Score=36.90 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---HHHHHhHCC--CCCHHHHHHHHH
Q 013569 251 GATWTEAETLLLLESVMRHGDN---WELVAQNVP--TKSKLDCISKLI 293 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g~n---W~~Ia~~Vg--tKT~~eCi~~fl 293 (440)
.-.||.+....+++||++.|.+ |..|-+.++ +-|.+++..|.-
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 5679999999999999999954 899999988 569999988864
No 68
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.50 E-value=0.27 Score=45.33 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CCHHHHHhHCC--CCCHHHHHHH
Q 013569 251 GATWTEAETLLLLESVMRHG---DNWELVAQNVP--TKSKLDCISK 291 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g---~nW~~Ia~~Vg--tKT~~eCi~~ 291 (440)
-..||..|...|+.++.+|| +.|+.|++... .||.++....
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y 52 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRL 52 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHH
Confidence 46899999999999999999 68999998754 7999887753
No 69
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=85.90 E-value=0.53 Score=46.63 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHh------------HCCCCCHHHHHHHHHcC
Q 013569 250 HGATWTEAETLLLLESVMRHG----DNWELVAQ------------NVPTKSKLDCISKLIEL 295 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~------------~VgtKT~~eCi~~flqL 295 (440)
.+..||.+|+..||-+|.+|| |+|+.|-. ++-+||+.|...|.-.|
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 467899999999999999999 69999973 45589999998887654
No 70
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=85.89 E-value=0.81 Score=46.52 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHhHCC-CCCHHHHHHHHH
Q 013569 252 ATWTEAETLLLLESVMRHG-DNWELVAQNVP-TKSKLDCISKLI 293 (440)
Q Consensus 252 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~Vg-tKT~~eCi~~fl 293 (440)
..||..+-..++.|.++|| ++-..||..|+ +||++|.. .|.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~ 166 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYA 166 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHH
Confidence 4799999999999999999 89999999998 99999988 454
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=69.24 E-value=4.2 Score=41.34 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHhH------------CCCCCHHHHHHHHHcC
Q 013569 250 HGATWTEAETLLLLESVMRHG----DNWELVAQN------------VPTKSKLDCISKLIEL 295 (440)
Q Consensus 250 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~------------VgtKT~~eCi~~flqL 295 (440)
.+..||.+|+..||=+|.+|| ++|+.|-.. +.+||+.++..|.-.|
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 467899999999999999999 689999654 3489999988877543
No 72
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=66.13 E-value=5.2 Score=30.65 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhc-----cchHHHHHHHHHHhhhhcccccc
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l-----~gDv~~i~Rih~FLe~wGlINy~ 106 (440)
-|-.|++....++...+|+.+.-..+ .-+...|.|....|+..|+|.-.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 45667776554332689999988887 44789999999999999999743
No 73
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=61.72 E-value=9.8 Score=28.55 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 013569 52 PKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (440)
Q Consensus 52 p~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 104 (440)
|+.-.+.|..|++....++ .+++.++.-+.+.-.-..+.|+..=|+..|+|-
T Consensus 5 ~~~m~~~~~~IL~~L~~~~-~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDDG-GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp ----CHHHHHHHHHHHHHC-SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccHHHHHHHHHHHHcC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 3333346889999887643 679999999999888999999999999999985
No 74
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=59.86 E-value=11 Score=32.10 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhc-----cchHHHHHHHHHHhhhhccccc
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINF 105 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l-----~gDv~~i~Rih~FLe~wGlINy 105 (440)
-|-.|++....++...+|+.+.-..| .-+...|.|...+|+..|||.-
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 47778887765543789999988777 2378999999999999999973
No 75
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=56.63 E-value=15 Score=30.90 Aligned_cols=54 Identities=7% Similarity=0.021 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhCCCceeeHHHHHhhc-----cchHHHHHHHHHHhhhhccccccCC
Q 013569 54 IYKEYRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINFGAV 108 (440)
Q Consensus 54 ~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l-----~gDv~~i~Rih~FLe~wGlINy~~~ 108 (440)
+.-.-|-.|++..... ...+|+.+.-..| .-+...+.|...+|+..|||.=-..
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 4456688899877754 5799999987777 2378999999999999999974433
No 76
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.64 E-value=19 Score=31.24 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhcccccc
Q 013569 56 KEYRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 56 ~~~RN~ii~~yr~np~~~LT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlINy~ 106 (440)
-.-|-.|++....++ ..+|+.+.-..|. -+...|.|...+|+..|||.=-
T Consensus 26 T~qR~~IL~~l~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 26 SKQREEVVSVLYRSG-THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHHCS-SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 345778888877664 6999999877772 3789999999999999999743
No 77
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=51.43 E-value=13 Score=32.30 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhccccc
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlINy 105 (440)
-|-.|++....++...+|+.+.-..|. -+...|.|...+|+..|||.-
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 467788866644327899999887772 378999999999999999973
No 78
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=51.01 E-value=18 Score=27.54 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 013569 59 RDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 59 RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 106 (440)
|..|+.....++ .+|..+..+.+.-....+.|...-|+..|+|-..
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 677887766653 4899999998877889999999999999999754
No 79
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.92 E-value=24 Score=30.26 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhcccccc
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlINy~ 106 (440)
-|-.|++..... ...+|+.+.-..|. -+...|.|...+|...|||.--
T Consensus 23 qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 23 QRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 467788877654 56899999877772 3689999999999999999743
No 80
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=46.17 E-value=25 Score=29.96 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhccccc
Q 013569 54 IYKEYRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (440)
Q Consensus 54 ~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlINy 105 (440)
+.-.-|-.|++....++ ..+|+.+.-..|. -+...|.|...+|..-|||.-
T Consensus 11 r~T~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred ccCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45567889999776554 6999999877773 378999999999999999973
No 81
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=45.74 E-value=29 Score=33.21 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=21.4
Q ss_pred CHHHHHhHCCCCCHHHHHHHHHc
Q 013569 272 NWELVAQNVPTKSKLDCISKLIE 294 (440)
Q Consensus 272 nW~~Ia~~VgtKT~~eCi~~flq 294 (440)
-|..||++..++|...-+.||..
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrK 195 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRK 195 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHH
Confidence 59999999999999999999973
No 82
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=44.45 E-value=34 Score=33.15 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CCHHHHHhHC--CCCCHHHHHHHH
Q 013569 251 GATWTEAETLLLLESVMRHG---DNWELVAQNV--PTKSKLDCISKL 292 (440)
Q Consensus 251 ~~~WT~~E~~~LLe~Ie~~g---~nW~~Ia~~V--gtKT~~eCi~~f 292 (440)
...||+.|...|+.++.+|| +.|+.|++-- ..|+.+....-|
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~ 49 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETY 49 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 46799999999999999999 5899997653 357776655444
No 83
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=44.19 E-value=17 Score=26.74 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHhHCCC
Q 013569 256 EAETLLLLESVMRHGDNWELVAQNVPT 282 (440)
Q Consensus 256 ~~E~~~LLe~Ie~~g~nW~~Ia~~Vgt 282 (440)
.-|...+.++++.+++|+.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457778999999999999999999993
No 84
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=42.12 E-value=16 Score=29.34 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=28.0
Q ss_pred CccCCCCCCCCCCceeEecCCCcccchhhhhc
Q 013569 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKN 226 (440)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~~~k~~~~LC~~CF~~ 226 (440)
.+.|+.|+.......|+|..-++.|-..|...
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCC
Confidence 47899999998878899999899999999863
No 85
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.60 E-value=24 Score=30.28 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-----chHHHHHHHHHHhhhhccccc
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlINy 105 (440)
-|..|++....++ .+|+.+.-..|. -+...|.|...+|..-|||.=
T Consensus 20 qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 20 QRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 4667777666654 899998866662 378999999999999999973
No 86
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=39.25 E-value=55 Score=27.41 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=43.3
Q ss_pred CCCh---hHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 013569 49 SRTP---KIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 49 ~ktp---~~Y~~~RN~ii~~yr~np~~~L-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 106 (440)
++.| ++|-.+|+.|++ =+..|...| +..+....+.--...+.+.+.-|+.-|||-..
T Consensus 11 s~~PlY~QI~~~i~~~I~~-G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVK-GVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHH-TSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHc-CCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 4555 456666666665 234789999 88887777766788999999999999999744
No 87
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=38.99 E-value=52 Score=27.15 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 013569 59 RDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (440)
Q Consensus 59 RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 108 (440)
+-.|+..-..++..++|+.+..+.+.-+...+.|...-|+..|+|--...
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 33455444446654599999999998899999999999999999986544
No 88
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=36.84 E-value=22 Score=28.36 Aligned_cols=38 Identities=18% Similarity=0.468 Sum_probs=24.7
Q ss_pred CCCCCCC--ceeEecC----CCcccchhhhhcCCCCCCCCCCCceecc
Q 013569 201 CGEQCNS--GCYEYSK----GSFVICEKCFKNGNYGEDKSKDDFRFSD 242 (440)
Q Consensus 201 Cg~dc~~--~~y~~~k----~~~~LC~~CF~~G~~~~~~s~~df~~i~ 242 (440)
|+..... ..|+|.. +...||..||..+. +..|+|.+..
T Consensus 11 Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~----H~gH~~~~~~ 54 (82)
T 3nis_A 11 CGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKD----HVNHHVCTDI 54 (82)
T ss_dssp CCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGG----GTTSCEEEEE
T ss_pred CCCcccCCCEEEEeeccCCCCCceEchhhCCCCC----cCCceEEEEE
Confidence 4444432 4566654 55679999998875 3467887654
No 89
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=35.90 E-value=53 Score=26.62 Aligned_cols=42 Identities=2% Similarity=0.038 Sum_probs=33.3
Q ss_pred HHHHhCCCceeeHHHHHhhccch----HHHHHHHHHHhhhhccccccCC
Q 013569 64 NKYREEPSRRLTFTQVRKSLVGD----VSLLHKVFRLLDEWGLINFGAV 108 (440)
Q Consensus 64 ~~yr~np~~~LT~t~~r~~l~gD----v~~i~Rih~FLe~wGlINy~~~ 108 (440)
-.|... .+|+.+..+.+..| ...+.|+...|+..|||--..+
T Consensus 43 ~L~~~~---~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 43 VIWSLG---EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp HHHHHS---CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHhCC---CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 346533 58999999998754 6899999999999999975433
No 90
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=35.82 E-value=50 Score=26.89 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 013569 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 52 p~~Y~~~RN~ii~~yr~np~~~L-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 106 (440)
-++|-.+|..|++- +..|...| +..+..+.+.---..+.+.+.-|+..|+|-..
T Consensus 12 ~~i~~~i~~~I~~g-~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 12 QQLRDKIVEAIIDG-SYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35666677766652 23688899 88888888866688999999999999999643
No 91
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.72 E-value=39 Score=29.66 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-------chHHHHHHHHHHhhhhccccc
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSLV-------GDVSLLHKVFRLLDEWGLINF 105 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l~-------gDv~~i~Rih~FLe~wGlINy 105 (440)
-|-.|++....++ ..+|+.+.-..|. -+...|.|...+|..-|||.=
T Consensus 34 qR~~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 34 QREVLLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4677888666554 8999999866552 257899999999999999973
No 92
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=34.24 E-value=63 Score=24.82 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhCC-CceeeHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 013569 54 IYKEYRDFMINKYREEP-SRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 54 ~Y~~~RN~ii~~yr~np-~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 106 (440)
+.-+....|+..-+.|+ ..++|+.+..+.|.-+-..|.|...=|++-|+|-..
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 33445677888888887 779999999999988889999999999999999654
No 93
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=34.12 E-value=22 Score=27.53 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=22.6
Q ss_pred CccCCCCCCCCCCceeEecCCCcccchhhhhcC
Q 013569 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNG 227 (440)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~~~k~~~~LC~~CF~~G 227 (440)
...|++||+.-..+.---.-++..+|..|....
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c 50 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC 50 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHHHHHH
Confidence 367999999866653322335677999997654
No 94
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=32.90 E-value=62 Score=27.01 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhccccc
Q 013569 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105 (440)
Q Consensus 52 p~~Y~~~RN~ii~~yr~np~~~L-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy 105 (440)
-.+|-.+|+.|+.- ...|...| +..+..+.+.---..+.+.+.-|+..|||-.
T Consensus 14 ~~i~~~l~~~I~~g-~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 14 LQLVDRIKNEVATD-VLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHTT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35677777777653 23688999 9999888887678899999999999999953
No 95
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=32.45 E-value=29 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.538 Sum_probs=21.1
Q ss_pred ceeEecC----CCcccchhhhhcCCCCCCCCCCCceecc
Q 013569 208 GCYEYSK----GSFVICEKCFKNGNYGEDKSKDDFRFSD 242 (440)
Q Consensus 208 ~~y~~~k----~~~~LC~~CF~~G~~~~~~s~~df~~i~ 242 (440)
..|+|.. ....||..||.++. +..|+|.+..
T Consensus 16 ~~Y~C~~C~~d~tc~lC~~CF~~~~----H~gH~~~~~~ 50 (75)
T 3ny3_A 16 PTYSCRDCAVDPTCVLCMECFLGSI----HRDHRYRMTT 50 (75)
T ss_dssp EEEEETTTBSSTTCCBCHHHHHTSG----GGGSCEEEEE
T ss_pred EEEECccCCCCCCeeEChHHCCCCC----cCCceEEEEE
Confidence 3455554 45679999999886 3457777754
No 96
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=32.25 E-value=28 Score=25.34 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=21.2
Q ss_pred ccCCCCCCCCCCceeEecCCCcccchhhhhc
Q 013569 196 FKCGSCGEQCNSGCYEYSKGSFVICEKCFKN 226 (440)
Q Consensus 196 ~~C~~Cg~dc~~~~y~~~k~~~~LC~~CF~~ 226 (440)
..|++||+.-..+.---.-++..+|..|...
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHHH
Confidence 5799999986655332233566799999753
No 97
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=31.99 E-value=19 Score=23.08 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=16.7
Q ss_pred HhhccChHHHHHHHHHHHHHH
Q 013569 383 ISTMVGPHVTAAAAEAAVAAL 403 (440)
Q Consensus 383 Las~V~P~VAaAAA~aAl~~l 403 (440)
+++...|.||+|+|-+-|+-|
T Consensus 7 ~as~faPGvaAAqAL~eIERL 27 (29)
T 1xnl_A 7 FASILAPGVAAAQALREIERL 27 (29)
T ss_dssp TTTSSSTTTHHHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHh
Confidence 467788999999887777665
No 98
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=31.83 E-value=77 Score=24.25 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=33.0
Q ss_pred ceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCC
Q 013569 72 RRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (440)
Q Consensus 72 ~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~~ 109 (440)
..+|.++..+.+.-+...+.|+..-|+..|+|-....+
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 45999999998888999999999999999999876554
No 99
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=29.55 E-value=53 Score=27.65 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 013569 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 52 p~~Y~~~RN~ii~~yr~np~~~L-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 106 (440)
-.+|-.+|+.|+.- +..|...| +..+..+.+.---..+.+.+.-|+..|||-..
T Consensus 7 ~~i~~~i~~~I~~g-~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 7 KQIASLIEDSIVDG-TLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHHTT-SSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 46788888888764 44688999 89888888876788999999999999999643
No 100
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=29.30 E-value=69 Score=27.89 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=36.1
Q ss_pred CccCCCCCCCCCCceeEecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHHH
Q 013569 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLL 263 (440)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~~~k~~~~LC~~CF~~G~-~~~~~s~~df~~i~~~~~~~~~~~~WT~~E~~~LL 263 (440)
-..|.-||.. .+.+-+..-++.+|..|-.--+ +|. +.+++- . .-+.||.+|...|.
T Consensus 25 N~~CaDCg~~--~P~WaS~n~GvfiC~~CsgiHR~LG~----~s~VrS--l-----~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 25 NRKCFDCDQR--GPTYVNMTVGSFVCTSCSGSLRGLNP----PHRVKS--I-----SMTTFTQQEIEFLQ 81 (140)
T ss_dssp GGSCTTTCSS--CCCEEETTTTEEECHHHHHHHTTSSS----CCCEEE--T-----TTCCCCHHHHHHHH
T ss_pred CCcCCCCCCC--CCCceeeccCEEEchhccchhccCCC----cceeee--c-----CCCCCCHHHHHHHH
Confidence 3568888864 5666777788999999987443 443 224432 1 12469998876554
No 101
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=29.01 E-value=58 Score=27.20 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=34.7
Q ss_pred CCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCC
Q 013569 69 EPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (440)
Q Consensus 69 np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~~ 109 (440)
.+..++|..+..+.+.-+...+.|+...|++-|+|--..+.
T Consensus 47 ~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 47 EGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp TTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC--
T ss_pred cCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEE
Confidence 35566899999999988999999999999999999877665
No 102
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=28.86 E-value=91 Score=24.48 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 108 (440)
.|-.|+...... .+|+++..+.+.-.-..+.|...-|+..|+|.....
T Consensus 22 ~r~~IL~~L~~~---~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 22 TRWEILTELGRA---DQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHHHHS---CBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 466677765332 389999999997789999999999999999986543
No 103
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=28.59 E-value=28 Score=30.73 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=35.3
Q ss_pred CCccCCCCCCCCCCceeEecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 013569 194 KGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (440)
Q Consensus 194 ~~~~C~~Cg~dc~~~~y~~~k~~~~LC~~CF~~G~-~~~~~s~~df~~i~~~~~~~~~~~~WT~~E~~~L 262 (440)
.-..|.-|+.. .+.+-+..-++.+|..|-.--+ ++.+.+ +++- . ..+..||.+|...|
T Consensus 36 ~N~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hIS---~VrS--l----~LD~~W~~~~l~~m 94 (144)
T 2p57_A 36 TNKACFDCGAK--NPSWASITYGVFLCIDCSGVHRSLGVHLS---FIRS--T----ELDSNWNWFQLRCM 94 (144)
T ss_dssp GGGBCTTTCCB--SCCEEEGGGTEEECHHHHHHHHHHCTTTC---CEEE--S----SSCCCCCHHHHHHH
T ss_pred CCCcCCCCcCC--CCCeEEeccCEEEhhhchHHHcCCCCCCC---eeee--c----ccCCCCCHHHHHHH
Confidence 34578888864 4666677778899999987433 444432 2321 1 11335998776655
No 104
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=28.33 E-value=90 Score=25.69 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccc
Q 013569 51 TPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLI 103 (440)
Q Consensus 51 tp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlI 103 (440)
.++.|-++++.|.+....+ ..+|+.+.|..+.----...=|.+||++.|+.
T Consensus 60 ~~~~~~~~~~~l~~~~~~~--~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 60 RNDRIVEFANMIRDLDQEC--GSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EHHHHHHHHHHHHHHHHHH--SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHHHHHHC--CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 5799999999999988875 68999999999842223333688899999975
No 105
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=28.10 E-value=98 Score=25.24 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=41.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccC
Q 013569 51 TPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (440)
Q Consensus 51 tp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~ 107 (440)
|+..|..++ .|+...+ ....+|+++..+.+.-+..++.|+..-|+..|||....
T Consensus 12 t~~~~~~L~-~l~~l~~--~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 12 SRREFSYLL-TIKRYND--SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp CHHHHHHHH-HHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHH-HHHHHHh--cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 556665555 3444333 34679999999999889999999999999999998643
No 106
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=27.85 E-value=83 Score=24.60 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCC-CceeeHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 013569 59 RDFMINKYREEP-SRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 59 RN~ii~~yr~np-~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 106 (440)
...|++..+.|+ .+++|+.+..+.|.-.-..|.|...=|++-|+|-..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 344555555554 889999999999987778999999999999999754
No 107
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=27.77 E-value=81 Score=25.46 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=38.1
Q ss_pred HhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCCC
Q 013569 67 REEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSR 110 (440)
Q Consensus 67 r~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~~~ 110 (440)
..+|...+|+++..+.+.-+-.++.|+..=|+..|+|--..++.
T Consensus 41 ~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~ 84 (139)
T 3eco_A 41 YAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQ 84 (139)
T ss_dssp HHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred HhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCC
Confidence 34666789999999999889999999999999999999776653
No 108
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=26.78 E-value=79 Score=25.46 Aligned_cols=41 Identities=5% Similarity=0.011 Sum_probs=35.9
Q ss_pred CCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCC
Q 013569 69 EPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (440)
Q Consensus 69 np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~~ 109 (440)
++...+|+++..+.+.-+...+.|+..=|+..|||--..++
T Consensus 46 ~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 46 NKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp TTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCC
Confidence 55557999999999988999999999999999999876665
No 109
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.67 E-value=46 Score=29.06 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=47.4
Q ss_pred CccCCCCCCCCCCceeEecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CC
Q 013569 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHG-DN 272 (440)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~~~k~~~~LC~~CF~~G~-~~~~~s~~df~~i~~~~~~~~~~~~WT~~E~~~LLe~Ie~~g-~n 272 (440)
-..|.-|+.. .+.+-+..-++.+|..|-.--+ ++.|.+ ++... .-+.||.+|...|..+ | ..
T Consensus 29 N~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hiS-----~VkSl-----~ld~w~~~~l~~m~~~----GN~~ 92 (141)
T 2crr_A 29 NKYCADCEAK--GPRWASWNIGVFICIRCAGIHRNLGVHIS-----RVKSV-----NLDQWTAEQIQCMQDM----GNTK 92 (141)
T ss_dssp GSSCSSSCCS--SCCSEETTTTEECCHHHHHHHHHHCTTTC-----CCBCS-----SSSCCCHHHHHHHHHT----HHHH
T ss_pred CCcCCCCCCC--CCCeEEeccCeEEhhhhhHhHhcCCCCCC-----eeeEC-----CCCCCCHHHHHHHHHH----ccHH
Confidence 3578888764 4566677778899999976432 454432 22221 1246999877655432 3 12
Q ss_pred HHHHHh-HCC----CCCHHHHHHHHHc
Q 013569 273 WELVAQ-NVP----TKSKLDCISKLIE 294 (440)
Q Consensus 273 W~~Ia~-~Vg----tKT~~eCi~~flq 294 (440)
.+.+=+ ++. .-++.+-++.||+
T Consensus 93 an~~~e~~lp~~~~~P~~~~~~e~fIr 119 (141)
T 2crr_A 93 ARLLYEANLPENFRRPQTDQAVEFFIR 119 (141)
T ss_dssp HHHHGGGSCCTTCCCCCSHHHHHHHHH
T ss_pred HHHHHHhcCCcccCCCCchHHHHHHHH
Confidence 233321 222 1245566788876
No 110
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=26.45 E-value=37 Score=27.74 Aligned_cols=31 Identities=26% Similarity=0.647 Sum_probs=25.6
Q ss_pred CccCCCCCCCCC-----CceeEecCCCcccchhhhh
Q 013569 195 GFKCGSCGEQCN-----SGCYEYSKGSFVICEKCFK 225 (440)
Q Consensus 195 ~~~C~~Cg~dc~-----~~~y~~~k~~~~LC~~CF~ 225 (440)
...|.+||.++. .+++.|..-.|-+|-.||.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE 51 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE 51 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHH
Confidence 468999999864 3577888889999999996
No 111
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=26.44 E-value=74 Score=25.37 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=32.3
Q ss_pred CCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 013569 70 PSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (440)
Q Consensus 70 p~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 104 (440)
...-++..+.++.+.-+...+.||..-||..|||-
T Consensus 33 g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 33 GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45679999999999999999999999999999996
No 112
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=26.25 E-value=52 Score=26.64 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=42.9
Q ss_pred hHHHHH--HHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhccccccC
Q 013569 53 KIYKEY--RDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (440)
Q Consensus 53 ~~Y~~~--RN~ii~~yr~np~~~L-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~ 107 (440)
.+|..+ |+.|+..| .|...| +..+..+.+.--...+.+.+.-|+.-|||-...
T Consensus 22 ~~y~~l~i~~~I~~~l--~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 22 LSYSELEAIEHIFEEL--DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp SCHHHHHHHHHHTTSS--BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHhhh--cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 578888 99999443 567777 999988888666788999999999999997544
No 113
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=25.35 E-value=1.4e+02 Score=24.22 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=36.9
Q ss_pred CCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCCC
Q 013569 69 EPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSR 110 (440)
Q Consensus 69 np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~~~ 110 (440)
++...+|.++..+.+.-+-.++.|+..=|+..|||-...++.
T Consensus 49 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~ 90 (127)
T 2frh_A 49 NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEH 90 (127)
T ss_dssp TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSS
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 444679999999999889999999999999999999877763
No 114
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=25.11 E-value=1.1e+02 Score=23.20 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 108 (440)
.|-.|+..-.. ...+|+++..+.+.-+-..+.|...-|+..|+|....+
T Consensus 25 ~~~~il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 25 KRLLILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 45567764443 34699999999997789999999999999999987654
No 115
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=24.99 E-value=30 Score=29.43 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=33.7
Q ss_pred HHHHHHHHcCC--------CHHHHHhHCCCCCHHHHHHHHHc--CCcCCCCCCCcc
Q 013569 261 LLLESVMRHGD--------NWELVAQNVPTKSKLDCISKLIE--LPFGEFMMGSAH 306 (440)
Q Consensus 261 ~LLe~Ie~~g~--------nW~~Ia~~VgtKT~~eCi~~flq--LPIeD~fL~~~~ 306 (440)
+|-..|.+.|| .|.+|++.+|-.+...-..+|.+ +|.|. |+...+
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~-~~~~~~ 106 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER-HMISQE 106 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH-HSCTTC
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH-HHhCcc
Confidence 67777877774 79999999997666666777776 67776 665544
No 116
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=24.41 E-value=75 Score=25.95 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=32.0
Q ss_pred hCCCceeeHHHHHh-hccchHHHHHHHHHHhhhhcccc
Q 013569 68 EEPSRRLTFTQVRK-SLVGDVSLLHKVFRLLDEWGLIN 104 (440)
Q Consensus 68 ~np~~~LT~t~~r~-~l~gDv~~i~Rih~FLe~wGlIN 104 (440)
.+| +.|.++... .+.-|-..+.|=...|++-|||=
T Consensus 27 ~~~--~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 27 KKD--FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HST--TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HCC--CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 366 999999999 77889999999999999999997
No 117
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.27 E-value=97 Score=23.88 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=29.8
Q ss_pred CccCCCCCCCCCCceeEecC-CCcccchhhhhcCCCCCCCCCCCceec
Q 013569 195 GFKCGSCGEQCNSGCYEYSK-GSFVICEKCFKNGNYGEDKSKDDFRFS 241 (440)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~~~k-~~~~LC~~CF~~G~~~~~~s~~df~~i 241 (440)
.+-|..|..+- -++|.- .+-.-|..||.+++.......|..++.
T Consensus 8 ~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 8 LPWCCICNEDA---TLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp CSSCTTTCSCC---CEEETTTTSEEECSSHHHHHTTTSSTTTCCEECC
T ss_pred CCeeEEeCCCC---eEEecCCCCceehHHHHHHHccchhhhccceeec
Confidence 46788888873 478877 344679999999986544444444443
No 118
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=24.17 E-value=77 Score=26.28 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 013569 53 KIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 53 ~~Y~~~RN~ii~~yr~np~~~L-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 106 (440)
++|-.+|+.|++ -...|...| |..+..+.+.--...+.+.+.-|+.-|+|--.
T Consensus 17 ~i~~~i~~~I~~-g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 17 QISDWMKKQMIT-GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp HHHHHHHHHHHT-TSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHh-CCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 566666666665 233688889 58888888766689999999999999999643
No 119
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=24.00 E-value=84 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=37.6
Q ss_pred hCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCCCC
Q 013569 68 EEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVSR 110 (440)
Q Consensus 68 ~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~~~ 110 (440)
..+...+|.++..+.+.-|-..+.|+..-|++.|||--..++.
T Consensus 46 ~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~ 88 (147)
T 4b8x_A 46 FSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPN 88 (147)
T ss_dssp TSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC-
T ss_pred HCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCC
Confidence 3566789999999999889999999999999999999877763
No 120
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=23.93 E-value=56 Score=28.46 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=35.9
Q ss_pred CccCCCCCCCCCCceeEecCCCcccchhhhhcC-CCCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 013569 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNG-NYGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (440)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~~~k~~~~LC~~CF~~G-~~~~~~s~~df~~i~~~~~~~~~~~~WT~~E~~~L 262 (440)
-..|.-||.. .+.+-+..-++.+|.+|-.-- .+|.|.+ +++ .. .-+.||.+|...|
T Consensus 36 N~~CaDCga~--~P~WaS~n~GvfiC~~CsgiHR~LG~hiS---~Vr--Sl-----~lD~w~~~~l~~m 92 (138)
T 2owa_A 36 NRTCFDCESR--NPTWLSLSFAVFICLNCSSDHRKMGVHIS---FVR--SS-----DLDKFTPIQLVRM 92 (138)
T ss_dssp GGBCTTTCCB--SCCEEETTTTEEECHHHHHHHHTTCTTTC---CEE--ET-----TTSCCCHHHHHHH
T ss_pred CCcCCCCcCC--CCCeEEecCCEEEhHhhhHHHhCCCCCCC---eee--ec-----CcCcCCHHHHHHH
Confidence 4578888864 466677778889999998744 3455442 233 11 1246999876544
No 121
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=23.71 E-value=56 Score=25.73 Aligned_cols=28 Identities=7% Similarity=-0.160 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHcCCCHHHHHhHCC
Q 013569 254 WTEAETLLLLESVMRHGDNWELVAQNVP 281 (440)
Q Consensus 254 WT~~E~~~LLe~Ie~~g~nW~~Ia~~Vg 281 (440)
+..-|...|.++++++++|..+.|+.+|
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 4455677889999999999999999999
No 122
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=23.42 E-value=50 Score=25.64 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=25.0
Q ss_pred CCCceeeHHHHHhhcc------------chHHHHHHHHHHhhhhccccccCC
Q 013569 69 EPSRRLTFTQVRKSLV------------GDVSLLHKVFRLLDEWGLINFGAV 108 (440)
Q Consensus 69 np~~~LT~t~~r~~l~------------gDv~~i~Rih~FLe~wGlINy~~~ 108 (440)
-+-..||..+++..+. .-...+..++.|.-.||+|...+.
T Consensus 46 ~~l~~it~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~ 97 (116)
T 2kj5_A 46 LKVEDVKPRHIDDVLKAVMKRGAPSIANDTLRWLKRMFNYAIKRHIIEYNPA 97 (116)
T ss_dssp SBSSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTSCSSCGG
T ss_pred CcHhhCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHcCccccCch
Confidence 3455566665544331 134567788889999999875433
No 123
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.23 E-value=1.3e+02 Score=23.87 Aligned_cols=49 Identities=16% Similarity=0.020 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 013569 57 EYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (440)
Q Consensus 57 ~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 108 (440)
..|..||..-+.++ +|+.+.-+.|.-...++.|...=||+-|+|-....
T Consensus 17 ~~~~~IL~lL~~~g---~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG---ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHHHSSST---EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC
Confidence 46778887666666 99999999998788999999999999999998643
No 124
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=22.79 E-value=1.2e+02 Score=23.29 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccccc
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 106 (440)
.|-.|+..- . ..+|+++..+.+.-....+.|...-|+..|||...
T Consensus 32 ~r~~Il~~L-~---~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 32 VRRKILRML-D---KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHHHHHHHH-H---TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-c---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 355676655 3 34899999888877889999999999999999743
No 125
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=22.77 E-value=40 Score=31.17 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=48.5
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccC
Q 013569 49 SRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (440)
Q Consensus 49 ~ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~ 107 (440)
+..+.+|-.+|+.|+.- +..|...|+..+....+.---..|.+-..-|+.-|||-...
T Consensus 26 s~~~~v~~~L~~~I~~g-~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDG-SLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp GHHHHHHHHHHHHHHTS-SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccHHHHHHHHHHHHHhC-CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34567999999999984 34789999999988888767888999999999999997543
No 126
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=22.62 E-value=1.1e+02 Score=23.86 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhcc-----c-------hHHHHHHHHHHhhhhccccc
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----G-------DVSLLHKVFRLLDEWGLINF 105 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l~-----g-------Dv~~i~Rih~FLe~wGlINy 105 (440)
++++|+..+-.-|-..||..+++..+. | -...+..++.|.-.||+|..
T Consensus 34 l~~~i~~~lg~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~ 93 (118)
T 2kj8_A 34 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 93 (118)
T ss_dssp HHHHHHHHHTTSBTTSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHhhHHhcCCcHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 344555555556778899988876552 1 13456677888888898853
No 127
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=22.59 E-value=1.1e+02 Score=23.18 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=32.2
Q ss_pred eeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 013569 73 RLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (440)
Q Consensus 73 ~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 108 (440)
.+|+++..+.+.-+...+.|+..-|+..|+|....+
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 489999999998899999999999999999986554
No 128
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=22.34 E-value=77 Score=31.27 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=42.0
Q ss_pred CChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhc--cc--hHHHHHHHHHHhhhhccccccCCC
Q 013569 50 RTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VG--DVSLLHKVFRLLDEWGLINFGAVS 109 (440)
Q Consensus 50 ktp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l--~g--Dv~~i~Rih~FLe~wGlINy~~~~ 109 (440)
+-|..|+.+|+.+.+. +. ...+||.+++++.. .| |-..+..+..||...|.|-|--+.
T Consensus 13 ~iP~sW~~l~~~L~~~-~~-~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~il~f~d~ 74 (332)
T 3dpt_A 13 PLAPSWIKVKEKLVEA-TT-AQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEAL 74 (332)
T ss_dssp ----CHHHHHHHHHHH-HH-HSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSSEECTTT
T ss_pred ccCHHHHHHHHHHHhh-hc-CCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEEEEecCC
Confidence 4689999999999885 43 35899999987654 23 333577888899999999887665
No 129
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=22.34 E-value=1.7e+02 Score=22.64 Aligned_cols=55 Identities=5% Similarity=0.056 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccC
Q 013569 53 KIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (440)
Q Consensus 53 ~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~ 107 (440)
..+.+|-++|-.....+-....|+.+....+.--..++.|=...||+.|+|--..
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecC
Confidence 4566666666555444313468999988887544677999999999999997544
No 130
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=22.09 E-value=1.4e+02 Score=27.94 Aligned_cols=54 Identities=22% Similarity=0.210 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 013569 51 TPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (440)
Q Consensus 51 tp~~Y~~~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 104 (440)
-++.+.++++.|...|+..+...-++.+....+.-|-..+..++++|.+-|.|=
T Consensus 135 ~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv 188 (258)
T 1lva_A 135 FSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLV 188 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEE
Confidence 456899999999999999998888999988888878888999999999999764
No 131
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=21.82 E-value=59 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHhHCC
Q 013569 256 EAETLLLLESVMRHGDNWELVAQNVP 281 (440)
Q Consensus 256 ~~E~~~LLe~Ie~~g~nW~~Ia~~Vg 281 (440)
.-|...|.++++.+++|..+.|+.+|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45777899999999999999999999
No 132
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=21.80 E-value=1.4e+02 Score=22.51 Aligned_cols=49 Identities=24% Similarity=0.222 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhccccccCC
Q 013569 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (440)
Q Consensus 58 ~RN~ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 108 (440)
.|-.|+..-..+ ..+|+++..+.+.-+-..+.|...-|+..|+|.....
T Consensus 17 ~~~~iL~~L~~~--~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~ 65 (100)
T 1ub9_A 17 VRLGIMIFLLPR--RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp HHHHHHHHHHHH--SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 344566543333 3699999999998789999999999999999986543
No 133
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.76 E-value=42 Score=25.53 Aligned_cols=32 Identities=19% Similarity=0.551 Sum_probs=24.7
Q ss_pred cCCccCCCCCCCCCCceeEecCCCcccchhhhhc
Q 013569 193 LKGFKCGSCGEQCNSGCYEYSKGSFVICEKCFKN 226 (440)
Q Consensus 193 ~~~~~C~~Cg~dc~~~~y~~~k~~~~LC~~CF~~ 226 (440)
..-+.|..|+..+...+| .+.+...|..||..
T Consensus 39 ~~CF~C~~C~~~L~~~~f--~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 39 PDHFNCANCGKELTADAR--ELKGELYCLPCHDK 70 (79)
T ss_dssp TTTSBCSSSCCBCCTTCE--EETTEEECHHHHHT
T ss_pred CCCCEeCCCCCccCCCCE--eECCEEeCHHHHHH
Confidence 345789999999887755 55777889999964
No 134
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=21.38 E-value=1.5e+02 Score=23.00 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCCceeeHHHHHhhccc-hHHHHHHHHHHhhhhcccc
Q 013569 56 KEYRDFMINKYREEPSRRLTFTQVRKSLVG-DVSLLHKVFRLLDEWGLIN 104 (440)
Q Consensus 56 ~~~RN~ii~~yr~np~~~LT~t~~r~~l~g-Dv~~i~Rih~FLe~wGlIN 104 (440)
+-.++| |+.|...|...+++.++-..|.. ..-=|.-|..=||.-|||-
T Consensus 14 ~lt~kF-i~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~ 62 (76)
T 1cf7_A 14 LLTTKF-VSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIE 62 (76)
T ss_dssp HHHHHH-HHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEE
T ss_pred HHHHHH-HHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhccee
Confidence 334444 56788899999999999999987 6555666666788999986
No 135
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=21.10 E-value=28 Score=27.58 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHhHCCC
Q 013569 256 EAETLLLLESVMRHGDNWELVAQNVPT 282 (440)
Q Consensus 256 ~~E~~~LLe~Ie~~g~nW~~Ia~~Vgt 282 (440)
.+|..+||+ |.||...|+++|-
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~Lg~ 33 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGELGY 33 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHTTC
T ss_pred HHHHHHHhC-----cCCHHHHHHHcCC
Confidence 567778998 9999999999996
No 136
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=20.93 E-value=30 Score=27.44 Aligned_cols=54 Identities=13% Similarity=0.266 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcee-eHHHHHhhccchHHHHHHHHHHhhhhccccc
Q 013569 51 TPKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105 (440)
Q Consensus 51 tp~~Y~~~RN~ii~~yr~np~~~L-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy 105 (440)
.-.+|-.+|..|+... ..|...| |..+..+.+.--...+.|.+.-|+..|||-.
T Consensus 13 ~~~l~~~i~~~I~~~~-l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 13 YADVATHFRTLIKSGE-LAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp HHHHHHHHHHHTTTTS-CCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE
T ss_pred HHHHHHHHHHHHHhCC-CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3467777777777622 3577888 9999888887677899999999999999953
No 137
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=20.91 E-value=58 Score=28.10 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHhHCCCCCHHHHHHHHHcC
Q 013569 257 AETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIEL 295 (440)
Q Consensus 257 ~E~~~LLe~Ie~~g-~nW~~Ia~~VgtKT~~eCi~~flqL 295 (440)
+-+.+||+.+++.| -.|.+||+.+|- |+..|..|.-+|
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl~~L 41 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 45678999999888 699999999984 888888888765
No 138
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=20.81 E-value=1e+02 Score=24.69 Aligned_cols=44 Identities=7% Similarity=0.025 Sum_probs=35.4
Q ss_pred HHHHHHhCCCceeeHHHHHhhccc----hHHHHHHHHHHhhhhccccccCC
Q 013569 62 MINKYREEPSRRLTFTQVRKSLVG----DVSLLHKVFRLLDEWGLINFGAV 108 (440)
Q Consensus 62 ii~~yr~np~~~LT~t~~r~~l~g----Dv~~i~Rih~FLe~wGlINy~~~ 108 (440)
|.-.|... .+|+.+..+.+.- +-..+.|+..-|+..|+|--..+
T Consensus 16 L~~L~~~~---~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~ 63 (126)
T 1sd4_A 16 MNIIWDKK---SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS 63 (126)
T ss_dssp HHHHHHSS---SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHhcC---CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeC
Confidence 44557743 4899999988863 68999999999999999987654
No 139
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.57 E-value=50 Score=25.25 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=24.8
Q ss_pred cCCccCCCCCCCCCCceeEe-cCCCcccchhhhhc
Q 013569 193 LKGFKCGSCGEQCNSGCYEY-SKGSFVICEKCFKN 226 (440)
Q Consensus 193 ~~~~~C~~Cg~dc~~~~y~~-~k~~~~LC~~CF~~ 226 (440)
..=+.|..|+..+....|.. .+.+...|..||.+
T Consensus 40 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~ 74 (82)
T 2co8_A 40 RSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74 (82)
T ss_dssp TTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCC
T ss_pred CCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHh
Confidence 34577888888887766654 45777889999854
No 140
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=20.45 E-value=58 Score=29.28 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=36.0
Q ss_pred CccCCCCCCCCCCceeEecCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 013569 195 GFKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 262 (440)
Q Consensus 195 ~~~C~~Cg~dc~~~~y~~~k~~~~LC~~CF~~G~-~~~~~s~~df~~i~~~~~~~~~~~~WT~~E~~~L 262 (440)
-..|.-|+.. .+.+-+..-++.+|.+|-.--+ ++.|.+ +++ .. .-+.||.+|...|
T Consensus 22 N~~CaDCga~--~P~WaS~nlGvflCi~CSGiHR~LG~hIS---kVK--Sl-----tLD~Wt~e~l~~m 78 (163)
T 3sub_A 22 NNKCFDCGIS--NPDWVSVNHGIFLCINCSGVHRSLGVHIS---IVR--SI-----KMDIFTDEQLKYI 78 (163)
T ss_dssp GGBCTTTCCB--SCCEEETTTTEEECHHHHHHHHHTCTTTC---CEE--ET-----TTCCCCHHHHHHH
T ss_pred CCccccCCCC--CCCeEEecCCeeEHHhhhHHhcCCCCCCC---eee--ec-----cccCcCHHHHHHH
Confidence 4678888875 5666777788999999976443 454432 222 21 1246999886554
No 141
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=20.37 E-value=1.5e+02 Score=23.70 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=33.7
Q ss_pred HHHHHHhCCCceeeHHHHHhhccchHHHHHHHHHHhhhhcccc
Q 013569 62 MINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (440)
Q Consensus 62 ii~~yr~np~~~LT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 104 (440)
|++.-+. ...+++++..+.+.-....|.|....|++.|+|-
T Consensus 7 Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 7 VRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4443343 4689999999999888999999999999999875
Done!