BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013570
(440 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297742739|emb|CBI35373.3| unnamed protein product [Vitis vinifera]
Length = 510
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 273/407 (67%), Positives = 319/407 (78%), Gaps = 9/407 (2%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
SP+WT++EIAE+VNG I++ GPPG ICTDTR L P QWFFAI G++FDAHEFI+PEL
Sbjct: 49 SPLWTVDEIAEAVNGTIVQRGPPGPICTDTRTLEPG--QWFFAIRGENFDAHEFITPELG 106
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KGCVGVIGN VC NWDKGFV++ G TL SL MA YARN +F G LVGVTGS GK
Sbjct: 107 HKGCVGVIGNWVCPNWDKGFVEMGGE----TLTSLEKMANYARN-KFHGCLVGVTGSAGK 161
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TT++MIAL LESLG+ V Q++GN NNR+GV LSLIGI + V VLE+GM +GEI+EL
Sbjct: 162 TTTRTMIALTLESLGL-VHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRGEIMEL 220
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR ARP IRV+LNVG +HLE+ SLE+VA AKGEI E+K GDVCVLNADDPLV +L VP
Sbjct: 221 ARKARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVMSLPVP 280
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
GV+KV FG R CDVR A +V +GG GV+VVLE+ E V+FVIPSPGLHLA NACA A
Sbjct: 281 HGVKKVLFGQRLECDVRFAAEKV-HGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACATA 339
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
AVA GVSL QVGISLS F PV MRSEL V+++GIKI+ND YNANP+ST+AAI+LLK+I
Sbjct: 340 AVAVALGVSLPQVGISLSRFIPVSMRSELEVAKTGIKIINDVYNANPVSTKAAIELLKNI 399
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
C GKRV ILGDMLELG E SHE +LS CCD+ DLI LVG R +
Sbjct: 400 DCKGKRVAILGDMLELGQAETVSHEMMLSLCCDSHFDLIALVGKRFL 446
>gi|225463627|ref|XP_002271742.1| PREDICTED: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase-like [Vitis vinifera]
Length = 771
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 273/407 (67%), Positives = 319/407 (78%), Gaps = 9/407 (2%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
SP+WT++EIAE+VNG I++ GPPG ICTDTR L P QWFFAI G++FDAHEFI+PEL
Sbjct: 310 SPLWTVDEIAEAVNGTIVQRGPPGPICTDTRTLEPG--QWFFAIRGENFDAHEFITPELG 367
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KGCVGVIGN VC NWDKGFV++ G TL SL MA YARN +F G LVGVTGS GK
Sbjct: 368 HKGCVGVIGNWVCPNWDKGFVEMGGE----TLTSLEKMANYARN-KFHGCLVGVTGSAGK 422
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TT++MIAL LESLG+ V Q++GN NNR+GV LSLIGI + V VLE+GM +GEI+EL
Sbjct: 423 TTTRTMIALTLESLGL-VHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRGEIMEL 481
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR ARP IRV+LNVG +HLE+ SLE+VA AKGEI E+K GDVCVLNADDPLV +L VP
Sbjct: 482 ARKARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVMSLPVP 541
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
GV+KV FG R CDVR A +V +GG GV+VVLE+ E V+FVIPSPGLHLA NACA A
Sbjct: 542 HGVKKVLFGQRLECDVRFAAEKV-HGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACATA 600
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
AVA GVSL QVGISLS F PV MRSEL V+++GIKI+ND YNANP+ST+AAI+LLK+I
Sbjct: 601 AVAVALGVSLPQVGISLSRFIPVSMRSELEVAKTGIKIINDVYNANPVSTKAAIELLKNI 660
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
C GKRV ILGDMLELG E SHE +LS CCD+ DLI LVG R +
Sbjct: 661 DCKGKRVAILGDMLELGQAETVSHEMMLSLCCDSHFDLIALVGKRFL 707
>gi|302819065|ref|XP_002991204.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
gi|300141032|gb|EFJ07748.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
Length = 515
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 189/403 (46%), Positives = 263/403 (65%), Gaps = 12/403 (2%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
IW +IA++V G + K G PG ICTDTR + ++ WF A+ G++FD + F++ L
Sbjct: 49 IWDCQQIAQAVGGILAKQGSPGSICTDTRGI--HRGDWFLALVGRNFDGNSFLAQAL-AA 105
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
GC G IG + +W GFV+V ++L +L +A ARN R+ G +VG+TGS GK+T
Sbjct: 106 GCAGAIGRSMPTDWPVGFVEVS-----DSLAALHKLAVDARN-RYRGHVVGITGSCGKTT 159
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK+M+ALALESLG ++ Q+ G+ NN +GV L+L+ + V+EMGM+ GEILEL+R
Sbjct: 160 TKAMVALALESLG-HIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSR 218
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ +P +RVVLNVG +H+E+LGSLE VA AKGE+F++S GDVC+LNADDPLV + V
Sbjct: 219 ICKPSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAMPVSPD 278
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE--REMVKFVIPSPGLHLAINACAAA 323
FFG D+RL+ +V +GG GV+ L+++ + PG+HLA NACAAA
Sbjct: 279 AMIRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGFETTFLSCPGIHLASNACAAA 338
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
VAT GV L S+S FSPV MRS L S I+++NDAYNANP+S A+++L +
Sbjct: 339 CVATSLGVPLKAASESISKFSPVGMRSRLEAISSNIQLINDAYNANPMSMTVALEILASV 398
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
C G++VV LGDMLELG R +H K + C + +D+IG G
Sbjct: 399 ECKGRKVVALGDMLELGDFARGAHMKAIKCCQEVHVDVIGTAG 441
>gi|302819192|ref|XP_002991267.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
gi|300140978|gb|EFJ07695.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
Length = 515
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 189/403 (46%), Positives = 263/403 (65%), Gaps = 12/403 (2%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
IW +IA++V G + K G PG ICTDTR + ++ WF A+ G++FD + F++ L
Sbjct: 49 IWDCQQIAQAVGGILAKQGSPGSICTDTRGI--HRGDWFLALVGRNFDGNSFLAQAL-AA 105
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
GC G IG + +W GFV+V ++L +L +A ARN R+ G +VG+TGS GK+T
Sbjct: 106 GCAGAIGRSMPRDWPVGFVEVS-----DSLAALHKLAVDARN-RYRGHVVGITGSCGKTT 159
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK+M+ALALESLG ++ Q+ G+ NN +GV L+L+ + V+EMGM+ GEILEL+R
Sbjct: 160 TKAMVALALESLG-HIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSR 218
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ +P +RVVLNVG +H+E+LGSLE VA AKGE+F++S GDVC+LNADDPLV + V
Sbjct: 219 ICKPSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAMPVSPD 278
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE--REMVKFVIPSPGLHLAINACAAA 323
FFG D+RL+ +V +GG GV+ L+++ + PG+HLA NACAAA
Sbjct: 279 AMIRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGSETTFLSCPGIHLASNACAAA 338
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
VAT GV L S+S FSPV MRS L S I+++NDAYNANP+S A+++L +
Sbjct: 339 CVATSLGVPLKAASESISKFSPVGMRSRLEAICSDIQLINDAYNANPMSMTVALEILASV 398
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
C G++VV LGDMLELG R +H K + C + +D+IG G
Sbjct: 399 ECKGRKVVALGDMLELGDFTRGAHMKAIKCCQELHVDVIGTAG 441
>gi|168029598|ref|XP_001767312.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681376|gb|EDQ67803.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 606
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 200/430 (46%), Positives = 273/430 (63%), Gaps = 38/430 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+W + IA +V+GK+L G G ICTDTR + QWF A+TG +FD H F+ + K
Sbjct: 116 MWDAHAIAHAVHGKVLAEGGAGSICTDTRTM--RAGQWFLALTGHNFDGHSFLY-QACEK 172
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
C GV+ N V + W +GFVQVEG+ TL++L +A R +RF G +VG+TGSVGK+T
Sbjct: 173 QCAGVVANWVPHGWSRGFVQVEGD----TLDALQALASDVR-ARFWGPVVGLTGSVGKTT 227
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
++M LAL+ L +V Q+ GN+NN +GVAL+L+ ++ VLE+GM+ GEILELA
Sbjct: 228 ARAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELAN 287
Query: 206 MARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
A+P++RV+LNVG +H+E+ G LE+VA AKGEIF+ ++ GD+C++NADDPL + +P
Sbjct: 288 TAKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDPLAMAVPLPA 347
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK------------------------E 300
GVR V FG + G D+RLVAA+ N G G+ V+LE
Sbjct: 348 GVRVVRFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNETVT 407
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL----LVSR 356
R V+F IPSPGLHLAINACAAAAVAT GV L V SLS F P+ MR ++ S
Sbjct: 408 RTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGPASH 467
Query: 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCD 416
I ++ND YNANP+S A++ LL+ + N +R+ +LGDM ELG SH+ IL C D
Sbjct: 468 VQILVINDCYNANPMSVEASLQLLQSVKSN-RRIALLGDMFELGEISLSSHKGILQLCVD 526
Query: 417 ACIDLIGLVG 426
+DL+ +VG
Sbjct: 527 FKLDLVIVVG 536
>gi|76880174|dbj|BAE45859.1| MurF synthetase [Physcomitrella patens subsp. patens]
Length = 606
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 200/430 (46%), Positives = 273/430 (63%), Gaps = 38/430 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+W + IA +V+GK+L G G ICTDTR + QWF A+TG +FD H F+ + K
Sbjct: 116 MWDAHAIAHAVHGKVLAEGGAGSICTDTRTM--RAGQWFLALTGHNFDGHSFLY-QACEK 172
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
C GV+ N V + W +GFVQVEG+ TL++L +A R +RF G +VG+TGSVGK+T
Sbjct: 173 QCAGVVANWVPHGWSRGFVQVEGD----TLDALQALASDVR-ARFWGPVVGLTGSVGKTT 227
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
++M LAL+ L +V Q+ GN+NN +GVAL+L+ ++ VLE+GM+ GEILELA
Sbjct: 228 ARAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELAN 287
Query: 206 MARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
A+P++RV+LNVG +H+E+ G LE+VA AKGEIF+ ++ GD+C++NADDPL + +P
Sbjct: 288 TAKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDPLAMAVPLPA 347
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK------------------------E 300
GVR V FG + G D+RLVAA+ N G G+ V+LE
Sbjct: 348 GVRVVRFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNETVT 407
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL----LVSR 356
R V+F IPSPGLHLAINACAAAAVAT GV L V SLS F P+ MR ++ S
Sbjct: 408 RTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGPASH 467
Query: 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCD 416
I ++ND YNANP+S A++ LL+ + N +R+ +LGDM ELG SH+ IL C D
Sbjct: 468 VQILVINDCYNANPMSVEASLQLLQSVKSN-RRIALLGDMFELGEISLSSHKGILQLCVD 526
Query: 417 ACIDLIGLVG 426
+DL+ +VG
Sbjct: 527 FKLDLVIVVG 536
>gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium thermocellum ATCC 27405]
gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum DSM 2360]
gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum JW20]
gi|385778591|ref|YP_005687756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum DSM 1313]
gi|419723581|ref|ZP_14250696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum AD2]
gi|419724594|ref|ZP_14251656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum YS]
gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum ATCC 27405]
gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum DSM 2360]
gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum JW20]
gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum DSM 1313]
gi|380772141|gb|EIC05999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum YS]
gi|380780263|gb|EIC09946.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
thermocellum AD2]
Length = 457
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 217/380 (57%), Gaps = 13/380 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWD-KGFVQVE 107
I TD+R + + F + G+ FD H +I+ L G +G + + + K ++V
Sbjct: 29 ISTDSRNI--KQGDLFIPLIGERFDGHNYIASALE-HGALGSLTQKETEPFPGKVLIKVS 85
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L ++A Y R +F VG+TGSVGK++TK M+A L S G V ++ GN
Sbjct: 86 -----DTLKALRDLAVYYR-QKFKIPFVGITGSVGKTSTKEMVAAVL-SKGFKVLKNQGN 138
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV L++ +D++ + AV+EMGMSG GEI L + +P+I ++ N+G SH+E LGS
Sbjct: 139 FNNEIGVPLTIFNLDKSHEAAVVEMGMSGFGEISRLTSIVKPDIAIITNIGVSHIEKLGS 198
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
++ +AK EIF+ + +LN DD L+ L R VF+G G D+R + +
Sbjct: 199 KNNILKAKMEIFEGLNEKGLAILNGDDKLLYGLNNLLKFRTVFYGMEEGLDLRAYNVE-S 257
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
G G +E + + IP PG+H NA A AV G+ ++ + FSP +
Sbjct: 258 LGEKGSTFDIEIRGKEYRVRIPVPGIHNVYNALAGIAVGIELGIPPEKIVEGIEEFSPGK 317
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
MR + +++ +G+KI+NDAYNA+P S AAID+LKDI+ G+ +LGDMLELG + +H
Sbjct: 318 MRLD-IINYNGLKIINDAYNASPQSMEAAIDVLKDISGEGRTFAVLGDMLELGEFSKSAH 376
Query: 408 EKILSYCCDACIDLIGLVGD 427
++ Y ID I VG+
Sbjct: 377 MEVGKYAASKGIDYIVAVGE 396
>gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
cellulolyticum H10]
gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
cellulolyticum H10]
Length = 459
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/410 (34%), Positives = 226/410 (55%), Gaps = 18/410 (4%)
Query: 30 NEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+E+ E+V GK+L WG PGI + TD+R + K+ F + G+ FD H++I
Sbjct: 7 SELIEAVGGKLL-WGKPGINFYGVTTDSRKVT--KDNLFIPLIGEKFDGHDYIEQCFNAG 63
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
V + Q+ + V+ +T +L ++A + R +F +VG+TGSVGK++
Sbjct: 64 ATVCLTSKQIPTVTGCTAILVD-----DTAKALRDLAAWYRR-KFDIPVVGITGSVGKTS 117
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK M++ L S V ++ GN+NN +G+ L++ ID + + AV+EMGMSG GEI L
Sbjct: 118 TKDMVSCVL-SQQYKVLKTQGNFNNEIGLPLTVFNIDYSHEAAVIEMGMSGFGEISRLTA 176
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ARP I ++ N+G SH+E LGS E + +AK EI +E + VLN DDPL+++L
Sbjct: 177 IARPHIAIITNIGVSHIEKLGSQEGILKAKLEILEELDKDGLVVLNGDDPLLSSLKGKLS 236
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
R VF+G G D + Q G G + + IP PG+H NA AA A
Sbjct: 237 FRTVFYGMNVGSDYTALNYQ-PKGEQGTTFEISVNDCLYNVEIPVPGIHNVYNALAAIAA 295
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
+ + + + FSP MR +++ +GIKI+NDAYNA+P S +AAI++L++I+
Sbjct: 296 GIEMKIPMEIIINGIKQFSPGNMRQS-IINHNGIKIINDAYNASPQSMQAAINVLQEISS 354
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG--DRVVVQC 433
+ + +LGDM E+G ++ H + + + I+ + VG R++ Q
Sbjct: 355 ESRSIAVLGDMFEMGDMSKDMHYSVGDFIKNKKINYLVTVGLDSRMISQA 404
>gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 466
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 145/402 (36%), Positives = 230/402 (57%), Gaps = 19/402 (4%)
Query: 32 IAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
+ +S+ GK+L I+ D+R + P FFA G+ D H+F+ + + G
Sbjct: 8 VVDSIKGKLLAGNEKTIVNGVEIDSRRVKPG--YLFFAFKGESSDGHDFLE-DAWKNGAA 64
Query: 89 GVIGNQ----VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
VI ++ K + V +TL++L ++A R S F+ +V VTGSVGK+
Sbjct: 65 AVIVSRGDCLTKAGPGKSLILVN-----DTLDALQDLAAAYRRS-FNIPVVAVTGSVGKT 118
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+TK ++AL L+S ++ GN+NN +G+ L+L+ +D+ +AVLEM M G+GE+L+LA
Sbjct: 119 STKDILALCLQS-RFKTLKTSGNYNNEIGLPLTLLQLDKTHQVAVLEMAMRGQGELLQLA 177
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A+P ++ NV HLE+LGSLE++ARAK E+ GD ++N D PL+ P
Sbjct: 178 TIAQPSSALISNVEKVHLETLGSLENIARAKAEVMATLGAGDFALINGDSPLLEEAVRPY 237
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
+K FG+ + CD R+ + N G+ ++++ + E K +P P A+NA AAAA
Sbjct: 238 AAKKYRFGYSKSCDFRIEETIIKNQGIEIRLICLGQSE--KLFLPLPSRRWAMNAVAAAA 295
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
+A L GV L ++ SL NF+P R E++ G KI+ND YNANP+S A++ +++
Sbjct: 296 MAFLLGVPLEEIKSSLLNFNPGSKRLEIIPLPDGGKIINDTYNANPLSMINALETSRELQ 355
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
GK V +LGDMLELG E+E H ++ + +DL+ +G
Sbjct: 356 EKGKLVAVLGDMLELGDYEQEGHREVGHHAVKNQVDLLICIG 397
>gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
potens JR]
gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
potens JR]
Length = 458
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 226/404 (55%), Gaps = 14/404 (3%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIA ++ +++K + +CTD+R + P F A+ G+ FDAH+F+ L
Sbjct: 4 MTLGEIAGAIKARMVKGNVDRVYTQVCTDSRQIVPG--SLFVALKGERFDAHDFVEQALQ 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G GVI +++ ++ G + + + TL +L +A Y R +FSG +V VTGS GK
Sbjct: 62 -LGAHGVIVSRMQHDLPDGDILLVDD----TLTALQQLARYNR-KKFSGPVVAVTGSNGK 115
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MI+ LE+ + V ++ GN+NN +G+ L+L+G+D + V+EMGM G GEI L
Sbjct: 116 TTTKDMISALLETKYL-VLKTLGNFNNEIGLPLTLLGLDESHGAVVVEMGMRGLGEIDFL 174
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR+A P V+ N+G++HLE LG++E++ARAK E+ +G VLN DDP
Sbjct: 175 ARIACPTAGVITNIGETHLERLGTVENIARAKTELLPHIPVGGYAVLNGDDPWQRKYAHL 234
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
+ +F+G V + N G G + +++ F +P PG H NA AA
Sbjct: 235 TRAKVIFYGMDHSNHVYADNIK-CNMGAGASFTVIRDKIAKVFHLPVPGRHNIYNALAAI 293
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
V G+S L N MR + ++ +G+KI+ND YNANP S++AA+ +L ++
Sbjct: 294 TVGLQEGLSWEMCMEGLQNVVLSGMRLQ-IIDCNGLKIINDTYNANPASSKAAVRILAEM 352
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
C GK+V +LGDM ELG + H ++ + ID++ VG+
Sbjct: 353 PCAGKKVAVLGDMYELGQRTVQGHREVGETVQNLKIDILVTVGE 396
>gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
papyrosolvens DSM 2782]
gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
papyrosolvens DSM 2782]
Length = 459
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 226/404 (55%), Gaps = 24/404 (5%)
Query: 31 EIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
E+AE+V GK+L WG P + + TD+R + K F + G+ FD H++I +
Sbjct: 8 ELAEAVTGKLL-WGEPDVTFFGVTTDSRKVT--KASLFIPLIGEKFDGHDYI------EQ 58
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
C G VC K +V G V +T +L ++A + R +F +VG+TGSVGK
Sbjct: 59 CFKA-GASVCLT-SKPIPEVAGCSAVLVDDTAKALRDLAAWHRK-KFDIPVVGITGSVGK 115
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK M++ L S +V ++ GN+NN +G+ L+++ ID + + AV+EMGMSG GEI L
Sbjct: 116 TSTKDMVSCVL-SQKYSVLKTQGNFNNEIGLPLTVLNIDSSHETAVIEMGMSGFGEISRL 174
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ARP+I ++ N+G SH+E LGS E + +AK EI + + VLN DDPL+ L
Sbjct: 175 TAIARPDIAIITNIGVSHIEKLGSQEGILKAKLEILEGLHKNGLVVLNGDDPLLKPLKGK 234
Query: 264 RGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
R V +G G D Q + G ++ + + V+ IP PG+H NA AA
Sbjct: 235 LPFRTVLYGMHGGSDYTASNYQTMGEQGTSFEITVNEAPYNVE--IPVPGIHNVYNALAA 292
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
A + + + + FSP MR +++ +GIKI+NDAYNA+P S +AAI++L++
Sbjct: 293 IAAGIEMKIPMEIIINGIKQFSPGNMRQS-IINHNGIKIINDAYNASPQSMQAAINVLEE 351
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
I+ + + +LGDM E+G+ ++ H + + + I+ I VG
Sbjct: 352 ISSGSRSIAVLGDMFEMGNMSKDLHYSVGEFIKNKKINYIITVG 395
>gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
DSM 12680]
gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
DSM 12680]
Length = 459
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 140/402 (34%), Positives = 213/402 (52%), Gaps = 15/402 (3%)
Query: 31 EIAESVNGKILKWGPPGIICTDTRILAPNKNQW--FFAITGQHFDAHEFISPELYGKGCV 88
+IA ++ G I++ G P I T + + FFA+ G D H+F+ L
Sbjct: 7 DIARAIEGNIIQ-GRPDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRNGALA 65
Query: 89 GVIGNQVC---NNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
V+ V ++G + V + +L +A + R RF LVGVTGSVGK+T
Sbjct: 66 AVVSRPVSLPQGLGERGLILVR-----DVKKALQMLARWHRQ-RFKLHLVGVTGSVGKTT 119
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK + A LE+ ++ GN+NN +GV L+L+ +D + V+EM M GEI ELA
Sbjct: 120 TKDLTATCLEAR-FQTLKTEGNYNNEIGVPLTLLRLDHRYEACVVEMAMRNLGEIEELAS 178
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+A P +++NV HLE+LGS+E +A+AK E+F+ +N D+PL+
Sbjct: 179 IALPTCGIIVNVEPVHLENLGSMERIAQAKCELFKYVDERGFVAINGDNPLLVEAAEKYA 238
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
V+KV FGW CD RL+ ++ ++ L + +F +P PG HLA N AAA V
Sbjct: 239 VKKVRFGWGANCDDRLLDVNSSSEETRIKASLAGQ--AAEFCLPFPGSHLAYNVIAAAGV 296
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
A GV LA + + +FSP R + GI I++D YNANP+S +A +++L D+A
Sbjct: 297 AVRLGVDLADIQSKIRSFSPSSRRLNIKTGLGGITIIDDCYNANPVSMKAGLEVLSDVAA 356
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
RV +LGDM ELGS E + H ++ + ++ + VG+
Sbjct: 357 GRYRVAVLGDMYELGSYEVQGHREVGYKAAELGVERLVTVGE 398
>gi|374296731|ref|YP_005046922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium clariflavum DSM 19732]
gi|359826225|gb|AEV68998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium clariflavum DSM 19732]
Length = 460
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 224/408 (54%), Gaps = 17/408 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I EI ++V+GK+L I TD+R++ +F + G+ FD H++I
Sbjct: 3 ILKCKEIVKAVDGKLLSGSLEAEFSNITTDSRVV--KNGDFFIPLVGEKFDGHDYILSS- 59
Query: 83 YGKGCVGVIGNQVCNNWD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ KG G + ++ + D K ++VE +TL +L +A Y R +F VG+TGSV
Sbjct: 60 FEKGAAGCLTHRDMSGVDGKIVIKVE-----DTLAALRKLAAYYR-QKFDIPFVGITGSV 113
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK M+ L S NV ++ GN+NN +GV L++ ++ + AV+EMGMSG GEI
Sbjct: 114 GKTSTKDMVYSVL-SQKYNVLRTQGNFNNEIGVPLTVFNLESYHEAAVVEMGMSGLGEIS 172
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L + RP+I ++ N+G SH+E LGS +++ RAK EI + K + +LN DD L++ L
Sbjct: 173 RLTSIVRPDIAIITNIGLSHIEKLGSRQNILRAKMEILEGLKDNGLVILNGDDNLLSGLK 232
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
R VF+G G D + + G +G + + K +P+PG+H NA A
Sbjct: 233 GLLKHRTVFYGMEDGLDYQAYNIS-SQGEMGTSFEITIGYKDYKVHVPAPGIHNMHNALA 291
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A AV + + + + F P +MR ++ +GIKI+NDAYNA+P S AI++LK
Sbjct: 292 AIAVGVELNIPVEDIIKGIGEFLPGKMRLN-IIDLNGIKIINDAYNASPQSMEVAINVLK 350
Query: 382 DIA-CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
D+A N + + ILGDMLELG ++H I Y + I VG +
Sbjct: 351 DVANSNNRTIAILGDMLELGDISVKAHRDIGKYAAMKEVSYIFTVGKK 398
>gi|376260795|ref|YP_005147515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. BNL1100]
gi|373944789|gb|AEY65710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. BNL1100]
Length = 459
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 221/401 (55%), Gaps = 18/401 (4%)
Query: 31 EIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
E+AE+V GK+L WG P + TD+R + K+ F + G+ FD H++I
Sbjct: 8 ELAEAVAGKLL-WGEPDRTFYGVTTDSRKVT--KDSLFIPLIGEKFDGHDYIEQCFKAGA 64
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
V + Q+ V V+ +T +L ++A + R +F +VG+TGSVGK++T
Sbjct: 65 SVCLTSKQILPVAGCSAVLVD-----DTAKALRDLATWHRR-KFDIPVVGITGSVGKTST 118
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K M++ L S V ++ GN+NN +G+ L+++ ID + + AV+EMGMSG GEI L +
Sbjct: 119 KDMVSCVL-SQKYCVLKTQGNFNNEIGLPLTVLNIDNSHETAVIEMGMSGFGEISRLTAI 177
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
A P I ++ N+G SH+E LGS E + +AK EI + + VLN DDPL+ L
Sbjct: 178 AIPRIVIITNIGVSHIEKLGSQEGILKAKLEILEGLNKDGLVVLNGDDPLLKPLKGKLPF 237
Query: 267 RKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
R VF+G G D + Q + G ++ + V+ IP PG+H NA AA AV
Sbjct: 238 RTVFYGMNSGSDYTALNYQTMGEQGTSFEITVNGYEYNVE--IPVPGIHNVYNALAAIAV 295
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
+ + + + FSP MR +++ +GIKI+NDAYNA+P S +AAI++L++I+
Sbjct: 296 GIEMKIPMEIILDGIKQFSPGNMRQS-IINHNGIKIINDAYNASPQSMQAAINVLEEISS 354
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ + +LGDM E+G R+ H + + + I+ + VG
Sbjct: 355 GSRSIAVLGDMFEMGDMSRDLHYSVGDFIKNKKINYLVTVG 395
>gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus atrophaeus 1942]
gi|419823022|ref|ZP_14346585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus atrophaeus C89]
gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus atrophaeus 1942]
gi|388472829|gb|EIM09589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus atrophaeus C89]
Length = 455
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/406 (35%), Positives = 219/406 (53%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T +IAE V G + I+ TDTR L KNQ F +TG++F+ H F+ + +
Sbjct: 5 TAKKIAEMVKGTLTDPTYENIVIQGVATDTRKL--EKNQLFIPLTGENFNGHTFVG-QAF 61
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V+ N+ N D+ + V+ +TL +L ++ A ++GVTGS
Sbjct: 62 ENGVSAVLWNKSEPNPPQDQAVILVD-----DTLGALQELSK-AYLQELGTRVIGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L++ V ++ GN+NN +G+ L+++ + ++AVLEMGMSGKGEI
Sbjct: 116 GKTTTKDMLHAVLQTQ-FRVHKTEGNFNNHIGLPLTVLSMPEDTEVAVLEMGMSGKGEID 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L R+A PE V+ N+G+SH++ LGS E +A AK EI K + + D+PL+ +
Sbjct: 175 LLTRLANPEAAVITNIGESHMQDLGSREGIAEAKLEITNGLKKDGILIYIGDEPLLNKRS 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVV-LEKEREMVKFVIPSPGLHLAINAC 320
R FG G D +L + G + ++K F IP G H +NA
Sbjct: 235 YS--CRTKTFGADEGNDYQLEDVKQTEDGTHFSIKGIDK-----TFFIPVLGKHNVLNAI 287
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA A FG+++ LS MR ELL S SG+ I+NDAYNA+P S +AAI+L+
Sbjct: 288 AAFAAGIHFGITVENAAKGLSGLKVTGMRLELLKSESGVSIINDAYNASPTSMKAAIELI 347
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ + GK++++LGDMLELG E+E H + + A ID + G
Sbjct: 348 ESMEGYGKKMLVLGDMLELGDLEQEFHTECGAVINPAAIDYVFTYG 393
>gi|366166620|ref|ZP_09466375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetivibrio cellulolyticus CD2]
Length = 457
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/402 (34%), Positives = 222/402 (55%), Gaps = 18/402 (4%)
Query: 31 EIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EI ++VNG +L G + TD+R + K +F + G+ FD H++I + +G
Sbjct: 8 EIVKAVNG-VLISGDLNTEFSNVTTDSRQV--RKGDFFIPLVGEKFDGHDYIITS-FEQG 63
Query: 87 CVGVIGNQVCNNWD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G + + ++ K ++VE +TL++L ++ Y R +F VG+TGSVGK++
Sbjct: 64 VSGCLTQKDTAGYEGKVVIKVE-----DTLSALRMLSSYYR-KKFDIPFVGITGSVGKTS 117
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK M++ L NV ++ GN+NN +GV L++ ++ + AV+EMGMSG GEI L
Sbjct: 118 TKDMVSSVLNK-KFNVLKTQGNFNNEIGVPLTVFNLESTHEAAVVEMGMSGFGEISRLTS 176
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ +P+I ++ N+G SH+E LGS +++ +AK EIF+ K + +LN DD L+ L
Sbjct: 177 IVKPDIAIITNIGLSHIEKLGSRQNILKAKMEIFEGLKSQGLVILNGDDNLLFGLKNLLN 236
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
R VF+G G D + + G G + E K +P PG+H NA AA A
Sbjct: 237 YRTVFYGMEDGLDYQAYNIS-SQGEQGTSFEITIGNENYKVHVPVPGIHNIHNALAAIAA 295
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
+ + + + FSP +MR ++ +GIKI+NDAYNA+P S AAI++LKDIA
Sbjct: 296 GIELNIPVKDIIEGIGEFSPGKMRLNIM-DHNGIKIINDAYNASPQSMEAAINVLKDIAG 354
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ + + +LGDMLELG ++H + + + I VG+
Sbjct: 355 DNRTIAVLGDMLELGDIAVKAHMGVGKFAFSKEVSYIVAVGE 396
>gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
alkaliphilus AHT 1]
gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
alkaliphilus AHT 1]
Length = 461
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 208/390 (53%), Gaps = 18/390 (4%)
Query: 27 WTINEIAESVNGKILKWG----PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ EI+E+V GK+ G G + D+R + P +F + G+H D H FI+
Sbjct: 1 MTLREISEAVGGKLPAAGDLDKKIGRVSIDSRDIGPG--DFFVPLAGEHTDGHRFIAAAA 58
Query: 83 YGKG--CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
C V + + VE + +L +++ + R +F +V VTGS
Sbjct: 59 EKGAAGCFAAFSKNVTHPEGMTVISVE-----DPEQALQDLSAFYRR-KFQLPVVAVTGS 112
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK MIA AL S + ++ GN NN +GV L L +D + AVLEMGMSG GEI
Sbjct: 113 VGKTTTKDMIAAAL-SPELKTLKTEGNLNNHLGVPLMLTRLDSTYEAAVLEMGMSGYGEI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++A P + V+ N+G+SHLE LGS E +ARAK E+ V V+NAD+PL+
Sbjct: 172 DLLAKLALPTVAVITNIGESHLEMLGSREGIARAKCELLGHLAADGVAVVNADEPLLVPH 231
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER-EMVKFVIPSPGLHLAINA 319
G R + FG+ VR + N G + ++E+E ++ V P PG H N
Sbjct: 232 IKGLGCRVITFGFDEHATVR--CTDIINDEAGKRAIIEQEGFAPLEVVPPLPGRHNIYNL 289
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA AV L GV + + S MR E + + +GI+++NDAYNA+P + AA D+
Sbjct: 290 MAALAVGRLLGVDDSVLTEGFSRVRLSGMRLETVTTPAGIQVINDAYNASPTAVSAAFDV 349
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEK 409
L ++A + R +LGDMLELG E E H +
Sbjct: 350 LAELAKDAARFAVLGDMLELGDWEEEGHRQ 379
>gi|345017942|ref|YP_004820295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter wiegelii Rt8.B1]
gi|344033285|gb|AEM79011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 461
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 226/407 (55%), Gaps = 23/407 (5%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 6 IDEIVRATEGKLIKGSLKDKVIGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAI-DK 62
Query: 86 GCVGVIGNQVCN-----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G + VI ++ N ++ + V TL +L +A Y R +F+ + VTGS
Sbjct: 63 GAIAVITARLENVECLKDFSVDVIYVN-----ETLEALHKIASYYR-KKFNIPFIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGMSG GEI
Sbjct: 117 SGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A P++ V N+G +H+E LGS E++ +AK E+ + K +V VLNADD +++ +
Sbjct: 176 RRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKI 235
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ + +G + G + A + G ++ L+ + + + PG+H N+
Sbjct: 236 PLKYSSKYYRYGIKSG---EIKACDIKKGEKDIKYTLKYKDLEKEIKLSVPGIHNVYNSL 292
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA V FG+++ + +L +F P +MR ++ + +KI++D YNANP S +AA+ +L
Sbjct: 293 AAICVGLEFGINVEDMAEALKDFQPGKMRLN-IIEKGDMKIIDDVYNANPDSMKAALSVL 351
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+D+ +++ +LGDMLELG E+H++I D+ ID++ GD
Sbjct: 352 RDLPAK-RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGD 397
>gi|338814772|ref|ZP_08626758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetonema longum DSM 6540]
gi|337273331|gb|EGO61982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetonema longum DSM 6540]
Length = 457
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/424 (33%), Positives = 238/424 (56%), Gaps = 28/424 (6%)
Query: 27 WTINEIAESVNGKILKWGPP------GIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
+T++E+ + G I+ P + TD+R +A F A+ G+ FD H+++S
Sbjct: 4 FTLDEVCLATGGSIISDKPESKALLFASVSTDSRSIA--SGDLFIALQGETFDGHDYLS- 60
Query: 81 ELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
+ KG G+I ++ + + VQ +TL +L ++A + R ++S ++
Sbjct: 61 QARQKGAGGIIVSRRDASLPQDCPVILVQ-------DTLKALQDLARFHRQ-KYSIPVIA 112
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGS GK+TTK MI+ L S+ NV ++ N+NN +G+ L+L+ + + V+EMGM G
Sbjct: 113 VTGSNGKTTTKDMISAVL-SVRFNVLKTEANYNNEIGLPLTLLRLQPEHEAVVVEMGMRG 171
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
+I LA++A P + V+ NVG++H+E LGS+E++A+AK E+ Q + VLN DD
Sbjct: 172 MEQIRALAQIALPNVAVITNVGETHIELLGSIENIAKAKAELVQAVAARGLVVLNGDDDR 231
Query: 257 VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
VA + R +++G + V+ + A G+ + + +E ++ +P+ G+H
Sbjct: 232 VAKMRDLTEARVIYYGLKPKAGVKAENIRTAASGVTFDSLTDGRKECIE--LPTYGVHNV 289
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI-KIVNDAYNANPISTRA 375
NA AA AV G++ ++ L NF+P MR L + + G+ ++ND+YNA+P+S +A
Sbjct: 290 YNALAAIAVGQSMGMTPEEIRQGLKNFTPSAMR--LHIEKMGLYTVINDSYNASPLSMKA 347
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKW 435
AI++L DIA G+ V +LGDMLELG+ E+H +I Y + I + VGD++ +
Sbjct: 348 AINVLGDIAA-GRAVAVLGDMLELGAHSAEAHRQIGLYLAEKQIKAVIGVGDQIQHTVRA 406
Query: 436 RKWS 439
K S
Sbjct: 407 AKES 410
>gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
thermodenitrificans NG80-2]
gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
sp. G11MC16]
gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
thermodenitrificans NG80-2]
gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
sp. G11MC16]
Length = 460
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 145/405 (35%), Positives = 217/405 (53%), Gaps = 17/405 (4%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE G+ +WG + + TDTR + + + G+ F+ H F+ E
Sbjct: 5 TVQQIAEMTGGRYANPEWGNIAVSGVSTDTRTI--QAGNLYVPLLGETFNGHAFVE-EAA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ + + + + +TL++L +A R + +VGVTGS GK
Sbjct: 62 QKGAAAVLWAEAEGTPPESVPAIVVD---DTLSALQRLATRYRE-QLGLKVVGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL S V ++ GN NN +GV L+L+ ++ DIAV+EMGMSG GEI +L
Sbjct: 118 TTTKDMIA-ALLSSQYRVQKTEGNLNNHIGVPLTLLALEEGTDIAVVEMGMSGFGEIEQL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--T 261
+ARP V+ N+G++HL+ LGS E +A+AK EI + + V + D+PL+A L +
Sbjct: 177 TTIARPNAAVITNIGEAHLQELGSREGIAKAKLEILSGLQGDGLFVYHGDEPLLAELVPS 236
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+P V FG D ++ G V+ E R+ IP G H NA A
Sbjct: 237 LPLPQHVVTFGEGEDNDYYPTTVRIEAAGTSF-VINELPRQ--TLFIPVLGKHHVYNALA 293
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A AVA FGVS + +LS +MR+E++ ++ G ++NDAYNA+P S RAA+ LL
Sbjct: 294 AIAVARFFGVSWENIAAALSRLQVTRMRTEVVKTKRGFTVINDAYNASPTSMRAALMLLT 353
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
++ K++ +LGDMLELG E E H+ I +D + G
Sbjct: 354 ELDGYRKKIAVLGDMLELGDKEVEFHQAIGEMLRPEMVDYVFTYG 398
>gi|392940680|ref|ZP_10306324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermoanaerobacter siderophilus SR4]
gi|392292430|gb|EIW00874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermoanaerobacter siderophilus SR4]
Length = 461
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 224/402 (55%), Gaps = 23/402 (5%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 6 IDEIVRATEGKLIKGSLKDKVIGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAI-DK 62
Query: 86 GCVGVIGNQVCN-----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G + VI ++ N ++ + V TL +L +A Y R +F+ + VTGS
Sbjct: 63 GAIAVITARLENVECLKDFSVDVIYVN-----ETLEALHKIASYYR-KKFNIPFIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGMSG GEI
Sbjct: 117 SGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A P++ V N+G +H+E LGS E++ +AK E+ + K +V VLNADD +++ +
Sbjct: 176 RRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKLELIENFKEENVIVLNADDDMLSKI 235
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ + +G + G + A + G ++ L+ + + + PG+H N+
Sbjct: 236 PLQYSSKYYRYGIKSG---EIKACDIEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSL 292
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA V FG+++ + +L +F P +MR ++ + IKI++D YNANP S +AA+ +L
Sbjct: 293 AAICVGLEFGINVEDMAEALKDFQPGKMRLN-IIEKGDIKIIDDVYNANPDSMKAALSVL 351
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+D+ +++ +LGDMLELG E+H++I D+ ID++
Sbjct: 352 RDLPAK-RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDIL 392
>gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 457
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 227/406 (55%), Gaps = 19/406 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I ++ EI ++ +GK+L I TD+R + + + F + G++F+ F+ L
Sbjct: 2 ILSVKEIIDATSGKLLSGDINSTISGISTDSRTIK--EGELFIPLKGENFNGEMFVEDAL 59
Query: 83 Y-GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G + N V ++K + V+ NT +L +A Y R +F + VTGS
Sbjct: 60 KIGSASLTESVNNVGR-YNKPVIFVD-----NTKEALHKIAKYYR-EKFQIPFIAVTGSN 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L S+ NV ++ GN+NN +G+ L++ +++ D+A++EMGMSG GEI
Sbjct: 113 GKTTTKDMIYDVL-SMKYNVLKTQGNFNNEIGLPLTIFRLNKKHDMAIVEMGMSGFGEIR 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L +A P + V N+G +H+E LGS E++ +AK E+ + K G +LNADD ++ LT
Sbjct: 172 RLKNIADPNVAVYTNIGVAHIEKLGSRENILKAKSELVENFKEGYTVILNADDDMLVKLT 231
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+G + + +G G DV+ + + +V+++ M+ + PG H N+ A
Sbjct: 232 NKKGPQYITYGIDNG-DVKAFDIEYKEESVKYKVIIDG--YMMDVELNVPGKHNVYNSLA 288
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A + FGV+ + +L+ F P MR +L SGIK++NDAYNANP S +AA+ +LK
Sbjct: 289 AICIGIKFGVNKEDMRKALAEFQPSAMRLNIL-DVSGIKVINDAYNANPGSMKAALSVLK 347
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ + ++V +LG+MLELG +HE++ Y D ID++ VG+
Sbjct: 348 EYK-DRRKVAVLGNMLELGEYSDLAHEEVGKYVKDENIDVLITVGE 392
>gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
ATCC 7061]
gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
ATCC 7061]
Length = 454
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 208/405 (51%), Gaps = 20/405 (4%)
Query: 28 TINEIAESVNGKI--LKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP--E 81
T+N+IA+ G + +G I + TDTR ++ K F + G+HF+ H F S E
Sbjct: 5 TVNQIAQMAGGTLSNQAFGEEQIYGVTTDTRKVS--KGALFIPLIGEHFNGHTFASKAVE 62
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L G V+ NQ N G + + + L L N R +VG+TGS
Sbjct: 63 L---GAAAVLWNQKEANPPFGVPVILVDDTLAALQQLAKSYLKEENPR----VVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L++ V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGEI
Sbjct: 116 GKTTTKDMIHSVLQTT-YQVHKTDGNFNNHIGLPLTILAMPEGTEIAVLEMGMSAKGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A PE V+ N+G+SH++ LGS E +A AK EI + K D+PL+ +
Sbjct: 175 FLSNLAEPETAVITNIGESHMQDLGSREAIADAKCEITKGLKKDGTFYYLGDEPLIRDRA 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+ FG CD+++ G QV E F+IP G H NA A
Sbjct: 235 TALSQQVKTFGEAEDCDIKVTHINQLAEGTEFQV----EGYAQGFLIPVLGKHNVKNALA 290
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A A+ FG++ Q+ L MR EL + GI ++NDAYNA+P S +AAIDL+
Sbjct: 291 AIAIGQHFGLNERQIAQGLMQTKLTGMRLELFKTEKGITVINDAYNASPTSMKAAIDLVG 350
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
D+ R+++LGDMLE+GS E H ++ Y ID + G
Sbjct: 351 DMDGFANRILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVMTYG 395
>gi|429503965|ref|YP_007185149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429485555|gb|AFZ89479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 456
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 135/378 (35%), Positives = 205/378 (54%), Gaps = 16/378 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N +G + N
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEGRAVILVN 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L +L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 88 DTLEALQTLAKAYLEELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKTYT--CRTTTYGAGADNDLRLKEIKQAEE 260
Query: 290 GLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G + +++ F IP G H +NA AA A FG++ + LS M
Sbjct: 261 GTYFNIDGIDR-----SFFIPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVTGM 315
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R EL+ + +GI IVNDAYNA+P S +AA++L++ + K++++LGDMLELG E+ HE
Sbjct: 316 RLELVKTDNGISIVNDAYNASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDEEKAFHE 375
Query: 409 KILSYCCDACIDLIGLVG 426
+ + A ID + G
Sbjct: 376 ECGAAVNPAEIDHVFTYG 393
>gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. m3-13]
Length = 453
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 215/403 (53%), Gaps = 26/403 (6%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +I E G+ + I+ DTR + + I G++F+ H F+ +
Sbjct: 5 TLKQIQEMAQGQPISSEYSAIVVEGVSKDTR--EDMSGKLYIPIIGENFNGHAFVRDAIE 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
KG V + W K + + N+ +T+ +L ++A RN + +VG+TG
Sbjct: 63 KKGAV-------ASFWQKDQPEPPTDLNLIVVDDTIEALQHLASSYRN-QIGMKVVGITG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+ LE+ V ++ GN+NN +G+ L+++ + ++AVLEMGMSG+GE
Sbjct: 115 SNGKTTTKDMVTSVLETT-FRVHKTAGNYNNHIGLPLTILSMKEDTEVAVLEMGMSGRGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ +A+P+ V+ N+G+SH++ LGS E +A AK EI K ++N D+PL+ +
Sbjct: 174 IELLSSIAKPDAAVITNIGESHMQDLGSREGIAEAKLEIAAGLKQDGKLIINGDEPLLTD 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
V + FG + D + A + G+G ++E+ ++ IP G H NA
Sbjct: 234 -RVGGKTNVIPFGLKANNDYQ--AKDIMLKGIGTHFIIEE----TEYFIPVLGAHNVTNA 286
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA V LFGVS L MR+E++ + G ++NDAYNA+P S RAA+DL
Sbjct: 287 LAAIIVGELFGVSEENRKKGLEQLVITGMRNEVVETSGGWTVINDAYNASPTSMRAALDL 346
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
L + GK++ +LGDMLELG E+ H +I Y D +D +
Sbjct: 347 LGSLDGYGKKIAVLGDMLELGDMEKTFHHEIGQYVKDKNVDYV 389
>gi|407980110|ref|ZP_11160908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. HYC-10]
gi|407413164|gb|EKF34892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. HYC-10]
Length = 454
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/401 (35%), Positives = 210/401 (52%), Gaps = 20/401 (4%)
Query: 28 TINEIAESVNGKI--LKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP--E 81
T+ ++A+ G + +G I + TDTR ++ K F + G+HF+ H F S E
Sbjct: 5 TVKQVAQMAGGTLSNQAFGEEQIHGVTTDTRKVS--KGALFIPLIGEHFNGHNFASKAVE 62
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L G V+ NQ N +G + ++ L L N R +VG+TGS
Sbjct: 63 L---GAAAVLWNQNEANPPEGVPVILVEDTLSALQQLAKSYLAEENPR----VVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L++ V ++ GN+NN +G+ L+++ + DIAVLEMGMS KGEI
Sbjct: 116 GKTTTKDMIHSVLQT-AYRVHKTDGNFNNHIGLPLTILAMPEGTDIAVLEMGMSAKGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++A P+ V+ N+G+SH++ LGS E +A AK EI + K + D+PL+
Sbjct: 175 FLSKLAEPDAAVITNIGESHMQDLGSREAIADAKCEITKGLKSDGIFYYLGDEPLLRARA 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
R FG CD+++ G QV E F+IP G H NA A
Sbjct: 235 NELTRRAKTFGEADDCDIKVTHINQLAEGTEFQV----EGYAQAFLIPVLGKHNVKNALA 290
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A A+ FG++ +Q+ L MR EL+ + GI ++NDAYNA+P S +AAIDL+
Sbjct: 291 AIAIGQHFGLNESQIAQGLLQTKITGMRLELIKTDKGITVINDAYNASPTSMKAAIDLVG 350
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
D+ R+++LGDMLE+GS E H ++ Y ID +
Sbjct: 351 DMDGFANRILVLGDMLEMGSEEETYHYELGEYIKPEFIDHV 391
>gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
lentocellum DSM 5427]
gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
lentocellum DSM 5427]
Length = 456
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 140/407 (34%), Positives = 226/407 (55%), Gaps = 26/407 (6%)
Query: 29 INEIAESVNGKILKWG----PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
I +I +V GK ++ G P +I TD+R + N F + G FD HEFI +Y
Sbjct: 5 IQDIISAVGGKCIQEGLIKQPIEVITTDSR--SQVTNGLFVPLKGDRFDGHEFIKS-VYE 61
Query: 85 KGCVGVIG--NQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG + + ++V + W ++VE +T +L+++ Y RN +F+ +VG+TGS
Sbjct: 62 KGVIATLTMEDKVIDPRLWT---IKVE-----DTRQALLDLGHYYRN-QFTVPVVGITGS 112
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK++TK M+A L S +V ++ GN+NN +G+ L+L +D + + AV+EMGM+ EI
Sbjct: 113 VGKTSTKEMVAAVL-SGKWHVHKTDGNFNNEIGLPLTLFKMDASHEAAVIEMGMNHFDEI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+ A PE+ V+ NVG SH+E+LGS E + +AK EI G + VLN D+ L++ +
Sbjct: 172 HRLSLAAAPEVAVITNVGTSHIENLGSREGILKAKLEILDGLMPGGLLVLNGDNDLLSTV 231
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+P KV +G D A +AN G ++ + I + G H+ N
Sbjct: 232 GELP--FNKVTYGLNTSND--YYAEAIANEGEYTTAIVTTPQYKCNIRIKALGEHMVYNT 287
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA AVA G+S A++ L +++P +MR L + I +++D YNA+P S AA+ +
Sbjct: 288 LAAIAVAQYLGLSKAEIQKGLESYAPAKMRMHLETYDNQITVIDDTYNASPDSMEAALKV 347
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+D G+++ +LGDM E+G E H+K+ ++ + ID + VG
Sbjct: 348 LRDYDTKGRKIAVLGDMFEMGEFAPELHKKVGAFAAEIGIDRVYAVG 394
>gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42]
gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42]
Length = 456
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/378 (35%), Positives = 205/378 (54%), Gaps = 16/378 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N +G + +
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEGRAVILVD 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L +L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 88 DTLEALQTLAKAYLKELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLRQKTYT--CRTTTYGAGADNDLRLKEIKQAEE 260
Query: 290 GLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G + +++ F IP G H +NA AA A FG++ + LS M
Sbjct: 261 GTYFNIDGIDR-----SFFIPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVTGM 315
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R EL+ + +GI IVNDAYNA+P S +AA++L++ + K++++LGDMLELG E+ HE
Sbjct: 316 RLELVKTENGISIVNDAYNASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDEEKAFHE 375
Query: 409 KILSYCCDACIDLIGLVG 426
+ + A ID + G
Sbjct: 376 ECGAAVNPAEIDHVFTYG 393
>gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
australiensis 50-1 BON]
gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
australiensis 50-1 BON]
Length = 464
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 218/404 (53%), Gaps = 18/404 (4%)
Query: 28 TINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T++E+ E+ G+++ KW + TD+R + P Q F A+ G+ +D H+FI +
Sbjct: 4 TVSEVIEATGGQLIAGDKWRIINGVSTDSRTVKPG--QLFIALIGERYDGHDFIDNAV-T 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
G V+ ++ +WD ++VE +TL +L +A Y R F +V +TGS GK+
Sbjct: 61 NGASAVMLSKDTADWDIPIIKVE-----DTLEALKRLAAYYRR-MFYLTVVAITGSSGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK I A+ S NV ++ GN NN++G+ L++ I+ AVLEMGMS GEI +LA
Sbjct: 115 TTKEFI-YAVLSQKYNVLKNRGNLNNQIGLPLTVFDINPHHQYAVLEMGMSALGEIHDLA 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+ARP I V+ N+G SH+E LG+ +++ RAK E+F DV VLN DDPL+ L
Sbjct: 174 DIARPHIGVITNIGLSHIEKLGNQQNILRAKLELFDFFGDNDVAVLNGDDPLLCTLHSVL 233
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGL--GVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
R ++F R D++++ ++ G V+ + +RE + I G H N+ AA
Sbjct: 234 PCRVLYFSTRGKGDIKVLNIRLYKNGYYCYTAVLPDGQREDIYLNI--AGFHNVYNSLAA 291
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
V V L Q+ + + R + I++++D YNANP S RAAI++L D
Sbjct: 292 VLVGMEANVPLKQIKAGIESLYDTPQRLRMFQIYPDIQLIDDTYNANPDSMRAAIEVLCD 351
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ +++ +LGDMLELG +H ++ ID++ VG
Sbjct: 352 LDS-ARKIAVLGDMLELGGIAETAHTELGRIVAQKRIDVLVTVG 394
>gi|403238272|ref|ZP_10916858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. 10403023]
Length = 457
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 224/416 (53%), Gaps = 22/416 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +I E NG+ L ++ DTR ++P + I G+ F+ H+F +
Sbjct: 5 TLAQIKEMANGEKLDSQHENVVIEGVSIDTRTISPGN--LYIPIIGETFNGHQFAQAAIE 62
Query: 84 GKGCVGVI--GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V V+ +Q D + V+ +TL +L +A R+S S ++G+TGS
Sbjct: 63 N-GAVAVLWGIDQPGPPQDVPVLFVK-----DTLEALQTLAKSYRDS-LSIKVIGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+A L S ++V ++ GN+NN +G+ L+++ + +AVLEMGMS GEI
Sbjct: 116 GKTTTKDMVASVL-STSMHVQKTEGNFNNHIGLPLTILRLKEDTQVAVLEMGMSAFGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L +ARP++ V+ N+G+SH+ LGS E +A+AK EI + + + D+PL+
Sbjct: 175 FLTLLARPDVAVITNIGESHMMDLGSREGIAKAKLEIVDGLSKEGLLIYHGDEPLLTEQV 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
++ FG + D ++ + N G + E+E +F +P G H NA A
Sbjct: 235 KGMDIQTTTFGESKRNDFYPLSIKQENEGTYFTI---NEQENKRFYLPVLGKHNVNNAMA 291
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A AVA G+S Q+ L MR EL+ +G K++NDAYNA+P+S +AAI L+
Sbjct: 292 AIAVARRLGLSWDQIEKGLHQIKITNMRLELIEGINGTKLINDAYNASPLSMKAAISLVH 351
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI---GLVGDRVVVQCK 434
D+ +GK++V+LGDMLELG E E HE++ + I+ + G +G+ + K
Sbjct: 352 DLQTSGKKIVVLGDMLELGDQENEYHEEVGRFIEPDKIEYVFTFGTLGEHIASGAK 407
>gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcaceae bacterium D16]
gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcaceae bacterium D16]
Length = 461
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 149/412 (36%), Positives = 220/412 (53%), Gaps = 30/412 (7%)
Query: 28 TINEIAESVNGKILKWGPPGIIC-----TDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ ++ E+V+G +L + TD+R + P F + G+ FD H +I+ L
Sbjct: 5 TVGQLLEAVHGTLLGGSQDMELTVSGVDTDSRDIHPG--SLFIPLVGERFDGHAYITSAL 62
Query: 83 YGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G G + +V ++ DK ++QV NT +L ++A + ++ RF VG+TGS
Sbjct: 63 EA-GAAGCLTARVRTDYREDKFYIQVG-----NTERALRDLAAWYKD-RFQIPFVGITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+T K MIA L S+ V ++ GN+NN +G+ L+L+ +D + VLEMGM GEI
Sbjct: 116 VGKTTAKDMIAAVL-SVKYKVLKTEGNFNNNIGLPLTLLRLDHTHQVGVLEMGMDKPGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLVAN 259
L+ + RPE+ V+ N+GD+H+E LGS E++ +AK E+ K + VLNADDP++
Sbjct: 175 DYLSDIVRPEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVVLNADDPMLTT 234
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV-----QVVLEKEREMVKFVIPSPGLH 314
L V+ VF G D R AQV GG GV + K VK IP+ G H
Sbjct: 235 LRGKTPVQAVFCGKAEDADYR---AQV-TGGDGVSHIHCHITTPKMERDVK--IPALGEH 288
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
+ AAAV FG++ ++ ++ F P +MR ++ I I++D+YNANP S R
Sbjct: 289 MIYPTLIAAAVGEHFGLTPDEIEDGIARFVPTRMRMNVIQREGEITILDDSYNANPQSMR 348
Query: 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
AAI +L D + K V ILGDM ELG H + Y ID + VG
Sbjct: 349 AAISVLADTHSSWK-VAILGDMFELGPYAPALHAGVGDYLGKRGIDCLVAVG 399
>gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bryantella formatexigens DSM 14469]
gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Marvinbryantia formatexigens DSM 14469]
Length = 455
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 205/363 (56%), Gaps = 16/363 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + F AI G+H D H FI P++Y +G + V+ + ++ VE
Sbjct: 31 IVTDSR--RAKEGSLFAAICGEHVDGHRFI-PQVYAQGALCVLCEKAPAEAQGPYILVE- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L+ +A + R + +VG+TGSVGK++TK MIA L S V ++ GN+
Sbjct: 87 ----STLKALMAIAEFYRQ-QLDIKVVGITGSVGKTSTKEMIASVL-SEKYRVLKTPGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + ++AVLEMG++ GE+ L+++ARP++ V+ N+G HLE LG
Sbjct: 141 NNELGLPLTVFQLTEEDEVAVLEMGINHFGEMHRLSKIARPDVCVITNIGTCHLEFLGDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ V RAK EIF VLN DD ++ L RG+ FFG C +R A + N
Sbjct: 201 DGVLRAKSEIFDFIAPDGQIVLNGDDDKLSALKEVRGITPQFFGIEHACAIR--ATDIEN 258
Query: 289 GGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
GL GV+ + E IP PG H+ +NA AA AV G+SL ++ + +
Sbjct: 259 AGLKGVKCRIHDGTESFAVTIPIPGYHMVLNALAATAVGRALGMSLEEIRRGIEKLQALG 318
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R +L + GI +V+D YNANP+S +A++ +L D G+++ +LGDM ELG E++ H
Sbjct: 319 GRFRILEA-GGITVVDDCYNANPMSMKASLGVLAD--APGRKIAVLGDMGELGENEQQLH 375
Query: 408 EKI 410
++
Sbjct: 376 GEV 378
>gi|435854482|ref|YP_007315801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halobacteroides halobius DSM 5150]
gi|433670893|gb|AGB41708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halobacteroides halobius DSM 5150]
Length = 458
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 227/404 (56%), Gaps = 15/404 (3%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
++ EI ++V GK+ I I TDTR L P F A+ G +F+AH FI
Sbjct: 4 LSVAEITKAVAGKLTANVDFKIDNISTDTRNLKPG--SLFIALIGDNFNAHNFIEDAFEK 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ ++ +V + DK + VE +T +L ++A Y RN +FS ++ VTGS GK+
Sbjct: 62 GAKIAIVSQEV--DLDKPLIVVE-----DTTKALQDLASYYRN-QFSLPVIAVTGSTGKT 113
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK MIA ++ +S GN+NN +G+ L+L ++ V+EMGM G G+I ELA
Sbjct: 114 TTKDMIAAVVDQ-KYKTLKSQGNFNNEIGLPLTLFRLNSTHQAVVVEMGMRGLGQIRELA 172
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++A+P + VV NVG +H+E LGS +A+AKGE+ + + + +LN DD V +
Sbjct: 173 QIAKPNLGVVTNVGVTHIELLGSQAKIAQAKGELIESLEQESIAILNGDDKRVRRMKELT 232
Query: 265 GVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
+ + +G ++ + + + + G+ +V + +E +F +P PG + NA AA
Sbjct: 233 SAQVITYGLAENNQLQAINIESLGSKGVKFNLVDNEAKEDYQFKLPLPGEYNVYNALAAV 292
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
AV ++L ++ I L N +MR++L+ +++ ++I+NDAYNANP S +AAI+ L ++
Sbjct: 293 AVGLELNLNLEEIKIGLENLKLSKMRNQLITTKNNLRIINDAYNANPTSMKAAINTLVEV 352
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
A +++ +LGDMLELG + H+KI ID + +GD
Sbjct: 353 AS-SRKIAVLGDMLELGKLATKEHQKIGRLIVHQKIDYLFTIGD 395
>gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus pumilus SAFR-032]
gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
pumilus SAFR-032]
Length = 454
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 141/405 (34%), Positives = 208/405 (51%), Gaps = 20/405 (4%)
Query: 28 TINEIAESVNGKI--LKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP--E 81
T+ +IA+ G + +G I + TDTR ++ K F + G+HF+ H F S E
Sbjct: 5 TVKQIAQMAGGTLSNQAFGEEQIHGVTTDTRKVS--KGALFIPLIGEHFNGHTFASKAVE 62
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L G V+ NQ N +G + + + L L N R +VG+TGS
Sbjct: 63 L---GAAAVLWNQKETNPPEGVPVILVDDTLAALQQLAKSYLKEENPR----VVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L++ V ++ GN+NN +G+ L+++ + + +IAVLEMGMS KGEI
Sbjct: 116 GKTTTKDMIHSVLQTT-YQVHKTDGNFNNHIGLPLTILSMPKGTEIAVLEMGMSAKGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A P+ V+ N+G+SH++ LGS E +A AK EI + K D+PL+
Sbjct: 175 FLSNLAEPDAAVITNIGESHMQDLGSREAIADAKCEITKGLKEDGTFYYLGDEPLIRERA 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+ FG CD+++ G QV E F+IP G H NA A
Sbjct: 235 TQLSQQVKTFGEADDCDIKVTHINQLAEGTEFQV----EGYAQGFLIPVLGKHNVKNALA 290
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A A+ FG++ Q+ L MR EL + GI ++NDAYNA+P S +AAIDL+
Sbjct: 291 AIAIGQHFGLNERQIAQGLMQTKLTGMRLELFKTEKGITVINDAYNASPTSMKAAIDLVG 350
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
D+ R+++LGDMLE+GS E H ++ Y ID + G
Sbjct: 351 DMDGFANRILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVMTYG 395
>gi|375085838|ref|ZP_09732460.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Megamonas funiformis YIT 11815]
gi|374566323|gb|EHR37568.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Megamonas funiformis YIT 11815]
Length = 463
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 226/392 (57%), Gaps = 21/392 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+++ ++ ++ N + K + + TDTR + + F A+ G++FD H+FI+ +
Sbjct: 6 FSLTQVMQATNAILKKLTSASVFGGVTTDTRKI--EEGMLFIALKGENFDGHDFIA-DAA 62
Query: 84 GKGCVGVIGNQ-----VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG +G I N+ + + D + V+ +TL + ++A + R +F+ ++ +T
Sbjct: 63 KKGAIGAIVNKDYDISLIEDIDIDILAVD-----DTLKAYQDLAHFWR-KKFNIPVIAIT 116
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK + A L S NV ++ N+NN +G+ ++L+ +D + D+AV+EMGM G G
Sbjct: 117 GSNGKTTTKDLTAAVL-SGKYNVLKTQANFNNEIGLPMTLLQLDGSYDVAVVEMGMRGLG 175
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I EL +A+P + V+ NVG++H+E LGS+E++A+AKGE+ Q ++ +LNADD V+
Sbjct: 176 QIKELTDIAKPTMGVITNVGETHMELLGSMENIAKAKGEMAQAIEINGNVILNADDEFVS 235
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+ ++FG D++ + N G + ++ + F + G+H +
Sbjct: 236 KMNRLTKAHAIYFGINHAGDIKAFDIKTVNDGKTEFDAIVGDK-VAHFTLNMIGIHNVYD 294
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
AA AV G+++ ++ L+ F P MR E + ++NDAYNA+P+ST+AA++
Sbjct: 295 CLAALAVGYACGLTVEEMQKGLATFKPTAMRFE-YKRLADFNLINDAYNASPMSTKAALE 353
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L +A ++++++GDM ELGS E+++HE I
Sbjct: 354 NLTKVA-KKRKILVMGDMFELGSVEQKAHEDI 384
>gi|421732893|ref|ZP_16172009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407073254|gb|EKE46251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 456
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 207/380 (54%), Gaps = 20/380 (5%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQVE 107
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N ++ + V+
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVD 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A A ++GVTGS GK+TTK M+ L S V ++ GN
Sbjct: 88 -----DTLEALQTLAK-AYLKELGTRVIGVTGSNGKTTTKDMLHAVL-STQYRVHKTAGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS
Sbjct: 141 FNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E +A AK EI + V D+PL+ R +G D+RL + A
Sbjct: 201 REGIAEAKLEIINGLREDGVLFYFGDEPLLREKAYT--CRTTTYGAGADNDLRLKEIKQA 258
Query: 288 NGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + +E+ F IP G H +NA AA A FG++ + LS
Sbjct: 259 EEGTYFSIDGIER-----SFFIPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVT 313
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR EL+ + +GI IVNDAYNA+P S +AA++L++ + K++++LGDMLELG E+
Sbjct: 314 GMRLELVKTENGISIVNDAYNASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDEEKAF 373
Query: 407 HEKILSYCCDACIDLIGLVG 426
HE+ + A ID + G
Sbjct: 374 HEECGAAINPAEIDHVFTYG 393
>gi|375361120|ref|YP_005129159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|451348183|ref|YP_007446814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens IT-45]
gi|371567114|emb|CCF03964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|449851941|gb|AGF28933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens IT-45]
Length = 456
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 207/380 (54%), Gaps = 20/380 (5%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQVE 107
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N ++ + V+
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVD 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A A ++GVTGS GK+TTK M+ L S V ++ GN
Sbjct: 88 -----DTLEALQTLAK-AYLKELGTRVIGVTGSNGKTTTKDMLHAVL-STQYRVHKTAGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS
Sbjct: 141 FNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E +A AK EI + V D+PL+ R +G D+RL + A
Sbjct: 201 REGIAEAKLEIINGLREDGVLFYFGDEPLLREKAYT--CRTTTYGAGADNDLRLKEIKQA 258
Query: 288 NGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + +E+ F IP G H +NA AA A FG++ + LS
Sbjct: 259 EEGTYFNIDGIER-----SFFIPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVT 313
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR EL+ + +GI IVNDAYNA+P S +AA++L++ + K++++LGDMLELG E+
Sbjct: 314 GMRLELVKTENGISIVNDAYNASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDEEKAF 373
Query: 407 HEKILSYCCDACIDLIGLVG 426
HE+ + A ID + G
Sbjct: 374 HEECGAAINPAEIDHVFTYG 393
>gi|433655386|ref|YP_007299094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293575|gb|AGB19397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 457
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 138/407 (33%), Positives = 227/407 (55%), Gaps = 21/407 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
I ++ EI ++ GK+L G + I D+R + + + F + G++F+ F+
Sbjct: 2 ILSVKEIIDATGGKLLS-GDINLTISGISIDSRTIK--EGELFIPLKGENFNGEMFVEDA 58
Query: 82 L-YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
L G + N V ++K + V+ NT +L +A Y R +F + VTGS
Sbjct: 59 LKIGSASLTESVNNVGR-YNKPVIFVD-----NTKEALHKIAKYYR-EKFQIPFIAVTGS 111
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MI L S+ NV ++ GN+NN +G+ L++ +++ D+A++EMGMSG GEI
Sbjct: 112 NGKTTTKDMIYDVL-SMKYNVLKTQGNFNNEIGLPLTIFRLNKKHDMAIVEMGMSGFGEI 170
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A P + V N+G +H+E LGS E++ +AK E+ + K G +LNADD ++ L
Sbjct: 171 RRLKNIADPNVAVYTNIGVAHIEKLGSRENILKAKSELVENFKEGYTVILNADDDMLVKL 230
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
T +G + + +G G DV+ + + +V+++ M+ + PG H N+
Sbjct: 231 TNKKGPQYITYGIDNG-DVKAFDIEYKEESVKYKVIIDG--YMMDVELNVPGKHNVYNSL 287
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA + FGV+ + +L+ F P MR +L SGIK++NDAYNANP S +AA+ +L
Sbjct: 288 AAICIGIKFGVNKEDMRKALAEFQPSAMRLNIL-DVSGIKVINDAYNANPGSMKAALSVL 346
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
K+ + ++V +LG+MLELG +HE++ Y D ID++ VG+
Sbjct: 347 KEYK-DRRKVAVLGNMLELGEYSDLAHEEVGKYVKDENIDVLITVGE 392
>gi|385263592|ref|ZP_10041679.1| hypothetical protein MY7_0312 [Bacillus sp. 5B6]
gi|385148088|gb|EIF12025.1| hypothetical protein MY7_0312 [Bacillus sp. 5B6]
Length = 445
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 208/380 (54%), Gaps = 20/380 (5%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQVE 107
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N ++ + V+
Sbjct: 20 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVD 76
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A A ++GVTGS GK+TTK M+ L + V ++ GN
Sbjct: 77 -----DTLEALQTLAK-AYLEELGTRVIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGN 129
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++ + +IAVLEMGMSG+GEI L+R+A PE V+ N+G+SH++ LGS
Sbjct: 130 FNNHIGLPLTVLAMPEDTEIAVLEMGMSGRGEIDFLSRLAEPEAAVITNIGESHMQDLGS 189
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E +A AK EI + V D+PL+ R +G D+RL + A
Sbjct: 190 REGIAEAKLEIINGLREDGVLFYFGDEPLLRQKAYT--CRTTTYGAGADNDLRLKEIKQA 247
Query: 288 NGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + +++ F IP G H +NA AA A FG++ + LS
Sbjct: 248 EEGTYFNIDGIDR-----SFFIPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVT 302
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR EL+ + SGI IVNDAYNA+P S +AA++L++ + K++++LGDMLELG E+
Sbjct: 303 GMRLELVKTDSGISIVNDAYNASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDEEKAF 362
Query: 407 HEKILSYCCDACIDLIGLVG 426
HE+ + A ID + G
Sbjct: 363 HEECGAAVNPAEIDHVFTYG 382
>gi|354582289|ref|ZP_09001191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus lactis 154]
gi|353199688|gb|EHB65150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus lactis 154]
Length = 461
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 203/385 (52%), Gaps = 28/385 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F I G+ FD H+F + W + V
Sbjct: 19 VATDSRTIQPG--NLFVPIVGEKFDGHQFG--------AAVLAAGAGALLWQRDHEPVP- 67
Query: 109 NGNV----NTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+G V +TL++L +A Y SR +VG+TGS GK+T K M+ LE+ V +
Sbjct: 68 DGPVILVDDTLSALQKLAAAYLAESRAK--VVGITGSNGKTTVKDMVTALLETR-YKVHK 124
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++ + DIAVLEMGMSG+ EI L+ +ARP+I V+ N+G++HL
Sbjct: 125 TQGNYNNHIGLPLTVLAMKEDTDIAVLEMGMSGRHEIELLSSIARPDIAVITNIGEAHLL 184
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-----TV-PRGVRKVFFGWRRGC 277
LGS E++ARAK EI K G + V + D+PL+ + TV P + FG R
Sbjct: 185 QLGSREEIARAKLEIVSGMKPGGLLVYHGDEPLIDQVLQEPGTVKPASMNTFTFGSRDTN 244
Query: 278 DVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337
D G+ V E F +P G H INA AA AVAT GVS ++
Sbjct: 245 DAYPTGMMFHARGI---VFTSNRYEGEGFSLPLLGRHNVINALAAMAVATQLGVSDEEIR 301
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
+ MR E + + G+ ++NDAYN++P + +AAID+L D+ R+ +LGDML
Sbjct: 302 RGFAGLKLTSMRIEAIETNHGVTVLNDAYNSSPTAAKAAIDVLGDMKGYRCRIAVLGDML 361
Query: 398 ELGSTERESHEKILSYCCDACIDLI 422
ELG ERE HE+I Y ++L+
Sbjct: 362 ELGQREREFHEEIGRYLSPDQVELV 386
>gi|452854494|ref|YP_007496177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452078754|emb|CCP20505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 456
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 134/378 (35%), Positives = 204/378 (53%), Gaps = 16/378 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N + + N
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVN 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L +L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 88 DTLEALQTLAKAYLEELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKTYT--CRTTTYGAGADNDLRLKEIKQAEE 260
Query: 290 GLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G + +++ F IP G H +NA AA A FG++ + LS M
Sbjct: 261 GTYFNIDGIDR-----SFFIPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVTGM 315
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R EL+ + +GI IVNDAYNA+P S +AA++L++ + K++++LGDMLELG E+ HE
Sbjct: 316 RLELVKTDNGISIVNDAYNASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDEEKAFHE 375
Query: 409 KILSYCCDACIDLIGLVG 426
+ + A ID + G
Sbjct: 376 ECGAAVNPAEIDHVFTYG 393
>gi|394994546|ref|ZP_10387260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. 916]
gi|393804646|gb|EJD66051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. 916]
Length = 456
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 136/380 (35%), Positives = 208/380 (54%), Gaps = 20/380 (5%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQVE 107
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ + +N ++ + V+
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWERSESNPPEERAVILVD 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A A ++GVTGS GK+TTK M+ L + V ++ GN
Sbjct: 88 -----DTLEALQTLAK-AYLEELGTRVIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS
Sbjct: 141 FNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E +A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 201 REGIAEAKLEIINGLREDGVLFYFGDEPLLREKTYT--CRTTTYGAGADNDLRLKEIKQA 258
Query: 288 NGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + +++ F IP G H +NA AA A FG++ + LS
Sbjct: 259 EEGTYFNIDGIDR-----SFFIPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVT 313
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR EL+ + +GI IVNDAYNA+P S +AA++L++ + K++++LGDMLELG E+
Sbjct: 314 GMRLELVKTENGISIVNDAYNASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDNEKAF 373
Query: 407 HEKILSYCCDACIDLIGLVG 426
HE+ + A ID + G
Sbjct: 374 HEECGAAINPAEIDHVFTYG 393
>gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Ruminococcus obeum A2-162]
Length = 456
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 219/380 (57%), Gaps = 16/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + K+ F I G+ DAH FI P++ KG + + + ++ D ++Q+
Sbjct: 31 ITTDSRKI--EKDCLFVPIVGERVDAHRFI-PDVMAKGALATLSERELSDADYPYIQI-- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L ++ ++A + + ++G+TGSVGK++TK +IA L+ ++ GN+
Sbjct: 86 ---TSSLQAVKDIAEFYLQ-QLQLPVIGITGSVGKTSTKEVIASVLKE-KYRTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + IAVLEMG+S GE+ L R+A+P+ V+ N+G HLE+LG
Sbjct: 141 NNELGLPLTVFRLREDDQIAVLEMGISDFGEMTRLTRIAKPDTCVITNIGTCHLENLGDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ V +AK EIF+ VLN DD +A + GV+ VFFG DV A Q+ +
Sbjct: 201 DGVLKAKTEIFRSMLPSGHIVLNGDDDKLATVEGYHGVKPVFFGLDAKRDV--YADQIVS 258
Query: 289 GGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
GL GV + + ++P+PG+H+ NA AAAAV ++G+++ ++ + + ++
Sbjct: 259 RGLKGVSCRIHMGEDAFDVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIKRGIESLETIR 318
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R +++ + + + +V+D YNANP+S +A++D+L D G+RV ILGDM ELG E H
Sbjct: 319 GRFKMIETENFL-VVDDCYNANPMSMKASLDVLHD--GEGRRVAILGDMGELGENEISLH 375
Query: 408 EKILSYCCDACIDLIGLVGD 427
E++ + ID+ VG+
Sbjct: 376 EEVGEHAAKCGIDVCICVGE 395
>gi|387896963|ref|YP_006327259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens Y2]
gi|387171073|gb|AFJ60534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens Y2]
Length = 445
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/380 (35%), Positives = 208/380 (54%), Gaps = 20/380 (5%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQVE 107
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N ++ + V+
Sbjct: 20 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVD 76
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A A ++GVTGS GK+TTK M+ L + V ++ GN
Sbjct: 77 -----DTLEALQTLAK-AYLKELGTRVIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGN 129
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS
Sbjct: 130 FNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGS 189
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E +A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 190 REGIAEAKLEIINGLREDGVLFYFGDEPLLREKTYT--CRTTTYGAGADNDLRLKEIKQA 247
Query: 288 NGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + +++ F IP G H +NA AA A FG++ + LS
Sbjct: 248 EEGTYFNIDGIDR-----SFFIPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVT 302
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR EL+ + +GI IVNDAYNA+P S +AA++L++ + K++++LGDMLELG E+
Sbjct: 303 GMRLELVKTENGISIVNDAYNASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDEEKAF 362
Query: 407 HEKILSYCCDACIDLIGLVG 426
HE+ + A ID + G
Sbjct: 363 HEECGAAVNPAEIDHVFTYG 382
>gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Halanaerobium hydrogeniformans]
gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Halanaerobium hydrogeniformans]
Length = 457
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 229/411 (55%), Gaps = 26/411 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ +IAE+ +GKI+K G I I D+R K+ F AI G+ D HEFI +
Sbjct: 4 LTLAQIAEAASGKIIK-GKAEIKIKDIVIDSR--EVKKDDLFIAIIGEINDGHEFIDSAV 60
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
++ Q+ + + ++V+ +T +L ++A Y R + +TGSVG
Sbjct: 61 ENGAKAVIVDRQINDYSNLAVIKVD-----DTTKALQDIAHYYRMKFKDLKIAAITGSVG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK MIA L + ++ GN+NN++G+ L+L+ + + AVLEMGMSG GEI
Sbjct: 116 KTSTKDMIAAVL-AQKYKTLKTSGNYNNQIGLPLTLLRLCSKDEFAVLEMGMSGFGEIEL 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +ARP+I V+ NVG +H+E LGS+E+VA AK E+ +LN D+ +
Sbjct: 175 LAELARPQIAVITNVGPAHIEQLGSIENVAAAKKELLDSLDKSGTAILNYDNEYTRKMAE 234
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLG---VQVVLEKEREMVKFVIPSPGLHLAINA 319
+ + FG+ G D++++ + N L +++ + ++ +KF + PG H NA
Sbjct: 235 NFNSKLITFGFSAGADLQVIENKF-NKDLNREEFKIIWQGKK--LKFYLNKPGKHNIYNA 291
Query: 320 CAAAAVATLFGVSLA--QVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
AA A+ L ++ Q G+S +FS ++M + L +G ++ND+YNANPIS RAA+
Sbjct: 292 LAAIAIGFLNNMNPKGIQDGLSKIDFSDLRMEIKEL--ENGAIVINDSYNANPISVRAAL 349
Query: 378 DLLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
D+L ++ GKR + +L MLELG E+++H +I Y IDL+ VG+
Sbjct: 350 DVLAEM--KGKRKIAVLASMLELGKMEKKAHLEIGEYIAKQNIDLLITVGE 398
>gi|423721479|ref|ZP_17695661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Geobacillus thermoglucosidans TNO-09.020]
gi|383365530|gb|EID42825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Geobacillus thermoglucosidans TNO-09.020]
Length = 458
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 221/409 (54%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +I V+G+ L G I + TDTR + K + + G FD H F+ L
Sbjct: 5 TLRDIQAMVDGRGLAAGFFDIMVHGVSTDTRTI--QKGNLYVPLKGAKFDGHTFVQDAL- 61
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG V+ ++ + D + V+ +TL +L +A R + S ++G+TGS
Sbjct: 62 DKGASAVLWSETEGSPPADVPVIVVD-----DTLRALQRLAHRYRK-QLSAKVIGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK ++A AL + V ++ GN NN +GV L+L+ ++ V++AV+EMGMS GEI
Sbjct: 116 GKTTTKDIVA-ALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----V 257
L+ +A P+ ++ N+G+SHL+ LGS E +A+AK EI K + V N D+PL V
Sbjct: 175 LLSNIAEPDAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYNGDEPLLASRV 234
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
A+L +P V + FG D + + G+ + R F +P G H
Sbjct: 235 AHLPLPEHV--LTFGQGNKNDYYPESVHLQANGMMFTIRQAANR---SFFLPILGKHHVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
NA AA AVA F VS V ++LS +MR E++ ++ G ++NDAYNANP S +AA+
Sbjct: 290 NALAALAVARFFDVSWENVQVALSRLQVTRMRMEVIETKKGWTVINDAYNANPTSMKAAL 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
LL+++ K++ +LGDMLELG E E H++I + +D + G
Sbjct: 350 QLLQELTGYKKKMAVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYG 398
>gi|384264052|ref|YP_005419759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|380497405|emb|CCG48443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
Length = 456
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/380 (35%), Positives = 208/380 (54%), Gaps = 20/380 (5%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQVE 107
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N ++ + V+
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPEERAVILVD 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A A ++GVTGS GK+TTK M+ L + V ++ GN
Sbjct: 88 -----DTLEALQTLAK-AYLKELGTRVIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS
Sbjct: 141 FNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E +A AK EI + V D+PL+ T R +G D+RL + A
Sbjct: 201 REGIAEAKLEIINGLREDGVLFYFGDEPLLREKTYT--CRTTTYGAGADNDLRLKEIKQA 258
Query: 288 NGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + +++ F IP G H +NA AA A FG++ + LS
Sbjct: 259 EEGTYFNIDGIDR-----SFFIPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVT 313
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR EL+ + +GI IVNDAYNA+P S +AA++L++ + K++++LGDMLELG E+
Sbjct: 314 GMRLELVKTENGISIVNDAYNASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDEEKAF 373
Query: 407 HEKILSYCCDACIDLIGLVG 426
HE+ + A ID + G
Sbjct: 374 HEECGAAVNPAEIDHVFTYG 393
>gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter ethanolicus CCSD1]
gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter ethanolicus CCSD1]
Length = 461
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/403 (32%), Positives = 225/403 (55%), Gaps = 25/403 (6%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 6 IDEIVRATEGKLIKGNLKDKVMGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAI-DK 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVN------TLNSLVNMACYARNSRFSGVLVGVTG 139
G VI ++ N V+ + +VN TL +L +A Y +F+ + VTG
Sbjct: 63 GASAVITARLDN------VECLKDFSVNVIYVNETLEALHKIASYYI-KKFNIPFIAVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGM+G GE
Sbjct: 116 SSGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGE 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L + +P++ V N+G +H+E LGS E++ +AK E+ ++ K +V VLNADD +++
Sbjct: 175 IRRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSK 234
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ + + +G + G + A + G ++ L+ + + + PG+H N+
Sbjct: 235 IPLQYSSKYYRYGIKSG---EIKACDIEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNS 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA V FG+++ + +L +F P +MR ++ + IKI++D YNANP S +AA+ +
Sbjct: 292 LAAICVGLEFGINVEDMAEALKDFQPGKMRLN-IIEKGDIKIIDDVYNANPDSMKAALSV 350
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
L+D+ +++ +LGDMLELG E+H++I D+ ID++
Sbjct: 351 LRDLPAK-RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDIL 392
>gi|389574288|ref|ZP_10164353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. M 2-6]
gi|388426050|gb|EIL83870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sp. M 2-6]
Length = 454
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 211/404 (52%), Gaps = 26/404 (6%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP--E 81
T+ ++A+ G + +G I + TDTR ++ K F + G+HF+ H F S E
Sbjct: 5 TVKQVAQMAGGTLSNEAFGEEQIHGVTTDTRKVS--KGALFIPLIGEHFNGHTFASKAVE 62
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L G V+ NQ N G + + L L N R +VG+TGS
Sbjct: 63 L---GAAAVLWNQTEANPPFGVPVILVEDTLTALQQLAKSYLKEENPR----VVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L++ V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGEI
Sbjct: 116 GKTTTKDMIHSVLQTT-YRVHKTDGNFNNHIGLPLTILAMPEGTEIAVLEMGMSAKGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV---A 258
L+++A P+ V+ N+G+SH++ LGS E +A AK EI + K D+PL+ A
Sbjct: 175 FLSKLAEPDAAVITNIGESHMQDLGSREAIADAKCEITKGLKEDGTFYYLGDEPLLRQRA 234
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
N + R V+ FG CD++++ G QV E F+IP G H N
Sbjct: 235 N-ALARSVKT--FGESEDCDIKVIHIHQLAEGTEFQV----EGYAQGFLIPILGKHNVKN 287
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA A+ FG++ Q+ L MR EL + GI ++NDAYNA+P S +AAID
Sbjct: 288 ALAAIAIGQHFGLNERQIAQGLMQTKLTGMRLELFKTDKGITVINDAYNASPTSMKAAID 347
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
L+ D+ R+++LGDMLE+GS E H ++ Y ID +
Sbjct: 348 LVGDMDGFANRILVLGDMLEMGSEEETYHFEVGEYIKPEFIDHV 391
>gi|398309563|ref|ZP_10513037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus mojavensis RO-H-1]
Length = 457
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 144/399 (36%), Positives = 210/399 (52%), Gaps = 30/399 (7%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE V G + + TDTR L NQ F + G+HF+ H F+ P+ +
Sbjct: 5 TVKQIAEMVKGTLTNPQYENTVIHGVATDTRKL--ESNQLFIPLKGEHFNGHTFV-PQAF 61
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V+ N+ N ++ + VE +TL++L +A A ++GVTGS
Sbjct: 62 EAGVSAVLWNRSEPNPPENQAVILVE-----DTLSALQQLAK-AYLQELGTRVIGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L++ V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGEI
Sbjct: 116 GKTTTKDMIHAVLQTR-YRVHKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEID 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL L
Sbjct: 175 LLTRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPL---LQ 231
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVV-LEKEREMVKFVIPSPGLHLAINAC 320
+ +G D +L + G + +EK F IP G H +NA
Sbjct: 232 KAYSCQTKTYGTGAQNDYQLQDVSQSEAGTHFTIKGIEK-----TFFIPILGKHNVMNAM 286
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA A FG++ LS+ MR EL+ + SGI I+NDAYNA+P S +AAI L
Sbjct: 287 AAIAAGVYFGITPEDAAKGLSSLKVTGMRLELMKTDSGISIINDAYNASPTSMKAAIQLT 346
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419
+ + GK++V+LGDMLELG E H++ C A I
Sbjct: 347 ESLEGYGKKMVVLGDMLELGDLEETFHKE-----CGAVI 380
>gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens DSM 7]
gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens DSM 7]
Length = 456
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/378 (35%), Positives = 202/378 (53%), Gaps = 16/378 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N K + +
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPKERAVILVD 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L L +R ++GVTGS GK+TTK M+ L + V ++ GN+N
Sbjct: 88 DTLEALQKLAKAYLEELGTR----VIGVTGSNGKTTTKDMLHAVLGT-QYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ R +G D+RL ++ G
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKAYT--CRTTTYGEGADNDLRL--KEIKQG 258
Query: 290 GLGVQVVLEK-EREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G ++ +R F IP G H +NA A A FG++ + LS M
Sbjct: 259 EEGTYFTIDSIDR---SFFIPVLGRHNVMNAMGAYAAGIYFGITPENAALGLSRLKVTGM 315
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R EL+ + +GI IVNDAYNA+P S +AAI+L++ + K++++LGDMLELG E+ HE
Sbjct: 316 RLELVKTENGISIVNDAYNASPTSMKAAIELIETMKGYRKKMLVLGDMLELGDEEKVFHE 375
Query: 409 KILSYCCDACIDLIGLVG 426
+ + A ID + G
Sbjct: 376 ECGAAINPAEIDHVFTYG 393
>gi|357008359|ref|ZP_09073358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus elgii B69]
Length = 469
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 215/416 (51%), Gaps = 32/416 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ EIA + G L G PG + DTR LA + + + G+ FD HEF +
Sbjct: 5 TLAEIA-VMAGGTLAQGTPGDAVIHGVSKDTRTLA--EGSLYVPLIGESFDGHEF-ADAA 60
Query: 83 YGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTG 139
+ +G + C N G + V+ +TL++L +A Y R + +VG+TG
Sbjct: 61 FERGAAASLWQTDCLNPPSGKPLILVD-----DTLSALQRLAQAYRRQLKVR--VVGITG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M L + + ++ GN+NN +G+ L+L+ +D +IAVLEMGMSG+GE
Sbjct: 114 SNGKTTTKDMTGAVLAT-AFRMHKTAGNYNNHIGLPLTLLELDDNTEIAVLEMGMSGRGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV-- 257
I L+R+A PE+ V+ N+GD+HL LGS ++ARAK EI G + + D+PL+
Sbjct: 173 IELLSRLAEPELAVITNIGDAHLLQLGSRTEIARAKTEILTGLLPGGALIYHGDEPLIEE 232
Query: 258 --ANLTVP-----RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS 310
L P G KV FG G L ++ G V+ + V F IP
Sbjct: 233 VLPELAQPGRMKADGYAKVRFGA--GASNDLYPLEMKLDAKGTHFVVNTD-PGVPFYIPL 289
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
G H +NA AA AV FG+ AQ+ L + MR E+ + SG+ + NDAYNA+P
Sbjct: 290 LGGHNVVNALAAIAVGKYFGLDAAQMAEGLQSLVVTGMRIEVSQAPSGLTVWNDAYNASP 349
Query: 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
S RAA+ LL + ++ +LGDMLELG E E H I + ++ + L G
Sbjct: 350 TSMRAALSLLHEATGYSRKFAVLGDMLELGPEEAEFHRDIGRFVEPDAVEAVYLYG 405
>gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
gi|149834281|gb|EDM89361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus obeum ATCC 29174]
Length = 456
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 215/383 (56%), Gaps = 16/383 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + K+ F I G+ DAH FI P++ KG + + + D ++QV+
Sbjct: 31 ITTDSRKI--EKDCLFVPIVGERVDAHRFI-PDVMTKGALATLSERELPEADYAYIQVDA 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+L ++ ++A + + +VG+TGSVGK++TK +IA L+ ++ GN+
Sbjct: 88 -----SLQAVKDIAEFYL-EQLQIPVVGITGSVGKTSTKEVIASVLKE-KYRTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + IAVLEMG+S GE+ L ++A+P+ V+ N+G HLE+LG
Sbjct: 141 NNELGLPLTVFRLRDEDQIAVLEMGISDFGEMARLTKIAKPDTCVITNIGTCHLENLGDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ V +AK EIFQ K VLN DD + + GV+ VFFG DV A Q+ +
Sbjct: 201 DGVLKAKTEIFQSMKPNGHIVLNGDDDKLITVREYNGVKPVFFGLNSERDV--YADQIES 258
Query: 289 GGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
GL GV + + ++P+PG+H+ NA AAAAV ++G+++ ++ + + ++
Sbjct: 259 KGLKGVACRIHLGEDAFDVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIRRGIESLETIR 318
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R +++ + + +V+D YNANP+S +A++D+L D G+RV ILGDM ELG E H
Sbjct: 319 GRFKMIETDKFL-VVDDCYNANPMSMKASLDVLHD--GEGRRVAILGDMGELGEDEAALH 375
Query: 408 EKILSYCCDACIDLIGLVGDRVV 430
E + + ID VGD V
Sbjct: 376 EGVGIHAAICGIDACVCVGDLAV 398
>gi|384158048|ref|YP_005540121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens TA208]
gi|384162853|ref|YP_005544232.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
amyloliquefaciens LL3]
gi|384167074|ref|YP_005548452.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens XH7]
gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus amyloliquefaciens TA208]
gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens LL3]
gi|341826353|gb|AEK87604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
amyloliquefaciens XH7]
Length = 456
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 133/378 (35%), Positives = 200/378 (52%), Gaps = 16/378 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
TDTR L KNQ F + G+HF+ H F+ P+ + KG V+ ++ N K + +
Sbjct: 31 ATDTRTL--EKNQLFIPLKGEHFNGHTFV-PQAFEKGVSAVLWDRSEPNPPKERAVILVD 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
+ L L +R ++GVTGS GK+TTK M+ L V ++ GN+N
Sbjct: 88 DTLEALQKLAKAYLEELGTR----VIGVTGSNGKTTTKDMLHAVL-GTQYRVHKTAGNFN 142
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + +IAVLEMGMS +GEI L+R+A PE V+ N+G+SH++ LGS E
Sbjct: 143 NHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSRE 202
Query: 230 DVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289
+A AK EI + V D+PL+ R +G D+RL + A
Sbjct: 203 GIAEAKLEIINGLREDGVLFYFGDEPLLREKAYT--CRTTTYGEGADNDLRLKEIKQAEE 260
Query: 290 GLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G + +++ F IP G H +NA A A FG++ + LS M
Sbjct: 261 GTYFTIDGIDR-----SFFIPVLGRHNVMNAMGAYAAGIYFGITPENAALGLSRLKVTGM 315
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R EL+ + +GI IVNDAYNA+P S +AAI+L++ + K++++LGDMLELG E+ HE
Sbjct: 316 RLELVKTENGISIVNDAYNASPTSMKAAIELIETMKGYRKKMLVLGDMLELGDEEKAFHE 375
Query: 409 KILSYCCDACIDLIGLVG 426
+ + A ID + G
Sbjct: 376 ECGAAINPAEIDHVFTYG 393
>gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. BT1B_CT2]
gi|423680896|ref|ZP_17655735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
licheniformis WX-02]
gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. BT1B_CT2]
gi|383442002|gb|EID49711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
licheniformis WX-02]
Length = 456
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 147/408 (36%), Positives = 214/408 (52%), Gaps = 24/408 (5%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIAE G + G + TD+R LA K Q F + G+ F+ H F + + +
Sbjct: 5 TVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLA--KGQLFIPLAGERFNGHVF-AEQAF 61
Query: 84 GKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+G V+ N+ N +G + V+ +TL +L +A RN + +VGVTGS
Sbjct: 62 QEGVAAVLWNRSEPNPPEGKPVILVD-----DTLEALQKLAKAYRN-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L + V ++ GN+NN +G+ L+++ + ++A+LEMGMS KGEI
Sbjct: 116 GKTTTKDMIHAVLGT-EYKVHKTEGNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEID 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN-L 260
L R+ARP+I V+ N+G+SHL LGS E +A AK EI + D+PL+ L
Sbjct: 175 FLTRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTLIYVGDEPLLTERL 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVK-FVIPSPGLHLAINA 319
P K F G D +L G +V R + F IP G H NA
Sbjct: 235 NQPPYDTKTF-GEDPAFDYQLEDMTQTEEGTAFRV-----RGIENGFFIPVLGKHNVKNA 288
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A L VS A + L+ MR EL+ + G+ I+NDAYNA+P S +AAI+L
Sbjct: 289 LAAIAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIEL 348
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
++ + GK++++LGDMLELG E+ HE+I ID + G+
Sbjct: 349 VEQMKGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGE 396
>gi|333978591|ref|YP_004516536.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333822072|gb|AEG14735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 465
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 141/405 (34%), Positives = 219/405 (54%), Gaps = 15/405 (3%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ E+A+++NG++ + G G+ + D+R LA + FFA+ GQ D H+F+ P+
Sbjct: 4 MTLKEVAQAINGRLCQ-GDAGVRVRAVSIDSRSLA--GGELFFALRGQRHDGHDFV-PQA 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G GV+ ++ + + G + + +TL L +A Y R + ++G+TGS G
Sbjct: 60 LAAGAAGVVVERMVSALNPGAAVIHVD---DTLAVLQQLARYNREV-YRVPVIGITGSSG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK ++A AL S N ++ GN NN +G+ L+L+ +D V+EM M G GEI
Sbjct: 116 KTSTKDLVAAAL-SRRFNTLKTTGNRNNEIGLPLTLLELDERFQAVVVEMAMRGPGEIAF 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L R+ARP V+ N+G++H+E LGS++++ARAKGEI + VL+ D P +
Sbjct: 175 LCRLARPTGAVITNIGEAHIERLGSVDNIARAKGEILEAIGPEGFAVLHRDSPYIRREAG 234
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
R FFG DV + GG +V + E + +P PG H NA AA
Sbjct: 235 RCRGRVYFFGIGGEADVLGRDIRPEKGGNRFRVRVPDGGE-TEIHLPLPGRHNVENALAA 293
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
VA GV L + L+ MR E++ R G+KI+ND YNANP STRAA+ +L +
Sbjct: 294 VGVAWALGVPLEDIAAGLAGAVLTPMRLEIIDCR-GLKIINDTYNANPSSTRAALQVLAE 352
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
G+R+ +LGDMLELG + +H ++ +D + VG+
Sbjct: 353 TGARGRRIAVLGDMLELGDEAQAAHRRVGGDAAAGVVDYLITVGN 397
>gi|379723225|ref|YP_005315356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Paenibacillus mucilaginosus 3016]
gi|386725948|ref|YP_006192274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus mucilaginosus K02]
gi|378571897|gb|AFC32207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Paenibacillus mucilaginosus 3016]
gi|384093073|gb|AFH64509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus mucilaginosus K02]
Length = 463
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 142/408 (34%), Positives = 214/408 (52%), Gaps = 22/408 (5%)
Query: 28 TINEIAESVNGKILKWG----PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIA G + P + DTR LA + + I G+ FD H F L
Sbjct: 5 TLGEIARMAGGTLADAAMADRPVKGVSKDTRTLA--EGNLYVPIIGEAFDGHNFAEAALE 62
Query: 84 GKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+G G++ + + G + VE + L +L +A R + +VG+TGS
Sbjct: 63 -QGASGLLWQRDHGSGPTGAPLIYVE-----DALQALQQLATSYRRE-LAVRVVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M A L S V ++ GN+NN +G+ L+L+ ++ +IAVLEMGMSG+GEI
Sbjct: 116 GKTTTKDMTAAVL-STTFRVHKTLGNYNNHIGLPLTLLQMNEDTEIAVLEMGMSGRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+R+A PEI ++ N+G++HL LGS ++ARAK EI + G V V + D+PL+ +
Sbjct: 175 LLSRLAEPEIAIITNIGEAHLLQLGSRLEIARAKAEILAGLQPGGVLVYHGDEPLLREVL 234
Query: 262 V---PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
P+ R V FG D+ + ++ G + V + + + IP G H A+N
Sbjct: 235 PEWEPQDFRGVTFGREASNDLFPLDLRLTESGTQMTVNTDPQ---TPYYIPMLGAHNAVN 291
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA AV FG++ + L MR E+ V+ SG+ + NDAYNA+P + RAA+
Sbjct: 292 ALAAIAVGRHFGLTAPVMAEGLQGLVMTGMRIEVSVAPSGLTVWNDAYNASPTAMRAALA 351
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
LL + ++ +LGDMLELG E E H +I A ++ + L G
Sbjct: 352 LLHEAQGFERKYAVLGDMLELGEKEAEFHREIGRVLDPAHVEAVFLFG 399
>gi|404487865|ref|YP_006711971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,
6-diaminopimeloyl-D-alanyl-D-alanine synthase MurF
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52346866|gb|AAU39500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,
6-diaminopimeloyl-D-alanyl-D-alanine synthase MurF
[Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 491
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 147/408 (36%), Positives = 213/408 (52%), Gaps = 24/408 (5%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIAE G + G + TD+R LA K Q F + G+ F+ H F + + +
Sbjct: 40 TVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLA--KGQLFIPLAGERFNGHVF-AEQAF 96
Query: 84 GKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+G V+ N+ N +G + V+ +TL +L +A RN + +VGVTGS
Sbjct: 97 QEGVAAVLWNRSEPNPPEGKPVILVD-----DTLEALQKLAKAYRN-QLDVKVVGVTGSN 150
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L V ++ GN+NN +G+ L+++ + ++A+LEMGMS KGEI
Sbjct: 151 GKTTTKDMIHAVL-GTEYKVHKTEGNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEID 209
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN-L 260
L R+ARP+I V+ N+G+SHL LGS E +A AK EI + D+PL+ L
Sbjct: 210 FLTRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTLIYVGDEPLLTERL 269
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVV-LEKEREMVKFVIPSPGLHLAINA 319
P K F G D +L G +V +E F IP G H NA
Sbjct: 270 NQPPYDTKTF-GEDPAFDYQLEDMTQTEEGTAFRVRGIEN-----GFFIPVLGKHNVKNA 323
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A L VS A + L+ MR EL+ + G+ I+NDAYNA+P S +AAI+L
Sbjct: 324 LAAIAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIEL 383
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
++ + GK++++LGDMLELG E+ HE+I ID + G+
Sbjct: 384 VEQMKGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGE 431
>gi|365845580|ref|ZP_09386345.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavonifractor plautii ATCC 29863]
gi|364559974|gb|EHM37934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavonifractor plautii ATCC 29863]
Length = 463
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 218/410 (53%), Gaps = 23/410 (5%)
Query: 27 WTINEIAESVNGKIL-KWGP----PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
TI EI ++V GK+L ++G G + TD+R + + F + G+ FD H +I+
Sbjct: 4 MTIREIMDAVGGKLLGEFGDINRMVGRVETDSRTI--HAGSLFVPLVGERFDGHAYINAA 61
Query: 82 LYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L G G G + ++ G +++V+ +T +L ++A Y + +F +V +TG
Sbjct: 62 LEG-GAAGCFTQRERESYLPGKFYIKVD-----STQRALRDLAKYYKK-KFPIPVVALTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK M+A L V ++ GN NN +GV ++L+ + +IAVLE+GM+ GE
Sbjct: 115 SVGKTTTKDMVAAVLGE-KYRVLKTEGNLNNEIGVPMTLLRLSGEHEIAVLELGMNHAGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ + P++ ++ N+GDSH+E GS E + AK EIF K G V+N DDPL+
Sbjct: 174 IDYLSALVEPDVVLMTNIGDSHIEHFGSREKILEAKSEIFHHVKSGAFVVINGDDPLLNT 233
Query: 260 L--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
L +P +V G G D R V++G + ++ + IP+ G H+
Sbjct: 234 LPGKLPYAFTRV--GAGEGLDYR-AEGLVSDGKSHMTCEVKTPHNYFRVEIPALGDHMIY 290
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
AAAV FG++ Q+ + +F+P +MR LL I I+ND YNANP S RAA+
Sbjct: 291 PTLMAAAVGEHFGLTQTQIADGVLHFAPTKMRMNLLHRGDDITILNDTYNANPQSMRAAV 350
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
++L A +V +LGDM ELG H + Y A ID + VG+
Sbjct: 351 EVLSS-ARGAYKVAVLGDMFELGPLAPALHAGVGDYLGKAGIDCLVAVGE 399
>gi|333896891|ref|YP_004470765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium xylanolyticum LX-11]
gi|333112156|gb|AEF17093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 457
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 140/407 (34%), Positives = 224/407 (55%), Gaps = 21/407 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
I T+ EI ++ GK+L G I I TD+R + P F + G+ F+ +FI
Sbjct: 2 ILTVKEILDATEGKLLS-GDINICVSGISTDSRTIKPG--DLFIPLKGERFNGEKFIDDA 58
Query: 82 LYGKGCVGVIGNQVCNNWD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
L G + + C D K + VE +T ++L +A Y R S+F+ + VTGS
Sbjct: 59 L-NVGSASLTESTNCIRHDNKPIIFVE-----DTKDALHRIAKYYR-SKFNIPFIAVTGS 111
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MI L S+ NV ++ GN+NN +G+ L+L ++ D+AV+EMGMSG GEI
Sbjct: 112 SGKTTTKDMIYDVL-SMKYNVLKTIGNFNNEIGLPLTLFTLNDDHDMAVVEMGMSGFGEI 170
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A P + V N+G +H+E LGS E++ +AK E+ ++ K GD V+NADD ++ +
Sbjct: 171 RRLKNIASPNVAVYTNIGVAHIEKLGSRENILKAKSELIEDFKNGDTVVINADDDMLIKM 230
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+G + V +G G D++ ++ +V+++ V+ + PG H N+
Sbjct: 231 LEKKGPKFVTYGINNG-DIKAFDIELNEESSKYKVLIDGYVLDVELNV--PGKHNIYNSL 287
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA + F V+ + +L+ F P MR ++ +GIKI+ND YNANP S +AA+ +L
Sbjct: 288 AAICIGIQFDVNKEDIRKALAKFQPSAMRLN-IIDVAGIKIINDVYNANPSSMKAALSVL 346
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
++V +LG+MLELG + +H ++ Y + ID++ VGD
Sbjct: 347 GGY-TERRKVAVLGNMLELGQYKDIAHREVGEYVKENDIDVLITVGD 392
>gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y4.1MC1]
gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y4.1MC1]
Length = 458
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 209/384 (54%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ TDTR + K + + G FD H F+ L KG V+ ++ + D + V
Sbjct: 30 VSTDTRTI--QKGNLYVPLKGAKFDGHTFVQDAL-DKGASAVLWSETEGSPPADVPVIVV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L +A R + S ++G+TGS GK+TTK ++A AL + V ++ G
Sbjct: 87 D-----DTLRALQRLAHRYRK-QLSAKVIGITGSNGKTTTKDIVA-ALLATTYKVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ ++ V++AV+EMGMS GEI L+ +A P+ ++ N+G+SHL+ LG
Sbjct: 140 NLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRGCDVRLV 282
S E +A+AK EI K + V N D+PL VA+L +P V + FG D
Sbjct: 200 SREGIAQAKLEILSGLKKNGLFVYNGDEPLLASRVAHLPLPEHV--LTFGQGNKNDYYPE 257
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ + G+ + R F +P G H NA AA AVA FGVS V +LS
Sbjct: 258 SVHLQANGMMFTIRQAANR---SFFLPILGKHHVYNALAALAVARFFGVSWENVQEALSR 314
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
+MR E++ + G ++NDAYNANP S +AA+ LL+++ K++ +LGDMLELG
Sbjct: 315 LQVTRMRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELTGYKKKMAVLGDMLELGDR 374
Query: 403 ERESHEKILSYCCDACIDLIGLVG 426
E E H++I + +D + G
Sbjct: 375 EVEFHQEIGAMLRPEIVDYVFTYG 398
>gi|442805606|ref|YP_007373755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Clostridium stercorarium subsp. stercorarium DSM 8532]
gi|442741456|gb|AGC69145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Clostridium stercorarium subsp. stercorarium DSM 8532]
Length = 461
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 137/402 (34%), Positives = 227/402 (56%), Gaps = 17/402 (4%)
Query: 30 NEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
++I++ VNG+++ + + TDTR L K F AI G+ FD H+FI E + KG
Sbjct: 7 DKISQWVNGRLIGNENAVADKVSTDTRTLT--KGSLFVAIRGEKFDGHDFIG-EAFRKGA 63
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGSVGKST 145
G++ ++ K + N + +++ + ARN F ++G+TGSVGK+T
Sbjct: 64 -GIVLSE------KEYPVSGDNAVILVKDTVKALGDLARNYIKLFDLTVIGITGSVGKTT 116
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK MIA L S V ++ GN+NN++G+ LS++ +DR+ +AV EMGMS GEI L+R
Sbjct: 117 TKEMIAQVL-STQYKVHKTMGNFNNQIGLPLSVLNLDRSHSVAVFEMGMSAMGEIDYLSR 175
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ +P+I ++ N+G SH+E LGS +++ RAK EI K V +LN DD L++ L
Sbjct: 176 IIQPDIGIITNIGISHIEKLGSRQNILRAKLEIINGMKENGVLILNGDDELLSGLEGLLP 235
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
+ VF+G C+V+ + + G GV+ + V +P PG+H +A AA A
Sbjct: 236 MPVVFYGINDNCNVKGYGIE-SLGEKGVRFTVNIRNRDVDIFLPVPGIHNVSDALAAIAC 294
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
A G++ + L +S +MR +V +K++ND YNA P S+ AA+ +L++I+
Sbjct: 295 AIEMGITDENIQKGLIQYSSEKMRMN-IVEYGNVKVINDTYNAAPASSMAALSVLREISG 353
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ + + +LGDMLELG+ E+H+ + + I+ + +G+
Sbjct: 354 SRRSIAVLGDMLELGAYSEEAHKSVGACVAHENINYLVAIGE 395
>gi|337748309|ref|YP_004642471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Paenibacillus mucilaginosus KNP414]
gi|336299498|gb|AEI42601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Paenibacillus mucilaginosus KNP414]
Length = 463
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 142/408 (34%), Positives = 214/408 (52%), Gaps = 22/408 (5%)
Query: 28 TINEIAESVNGKILKWG----PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIA G + P + DTR LA + + I G+ FD H F L
Sbjct: 5 TLGEIARMAGGTLADAAMADRPVKGVSKDTRTLA--EGNLYVPIIGEAFDGHNFAEAALE 62
Query: 84 GKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+G G++ + + G + VE + L +L +A R + +VG+TGS
Sbjct: 63 -QGASGLLWQRDHGSGPAGAPLIYVE-----DALQALQQLATSYRRE-LAVRVVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M A L S V ++ GN+NN +G+ L+L+ ++ +IAVLEMGMSG+GEI
Sbjct: 116 GKTTTKDMTAAVL-STTFRVHKTLGNYNNHIGLPLTLLQMNEDTEIAVLEMGMSGRGEID 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+R+A PEI ++ N+G++HL LGS ++ARAK EI + G V V + D+PL+ +
Sbjct: 175 LLSRLAEPEIAIITNIGEAHLLQLGSRLEIARAKAEILAGLQPGGVLVYHGDEPLLREVL 234
Query: 262 V---PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
P+ R V FG D+ + ++ G + V + + + IP G H A+N
Sbjct: 235 PEWEPQDFRGVTFGREASNDLFPLDLRLTESGTQMTVNTDPQ---TPYYIPMLGAHNAVN 291
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA AV FG++ + L MR E+ V+ SG+ + NDAYNA+P + RAA+
Sbjct: 292 ALAAIAVGRHFGLTAPVMAEGLQGLVMTGMRIEVSVAPSGLTVWNDAYNASPTAMRAALA 351
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
LL + ++ +LGDMLELG E E H +I A ++ + L G
Sbjct: 352 LLHEAQGFERKYAVLGDMLELGEKEAEFHREIGRVLDPAHVEAVFLFG 399
>gi|365156795|ref|ZP_09353091.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
smithii 7_3_47FAA]
gi|363626852|gb|EHL77817.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
smithii 7_3_47FAA]
Length = 457
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 202/383 (52%), Gaps = 18/383 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF--VQV 106
+ D+R + K F + G H D H ++ + G + + N + F + V
Sbjct: 29 VSIDSRKI--EKGNLFVPLKGDHTDGHRYVET-AFQNGAAASLWQKDVPNPPEHFPIIMV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L +A R+ S +VGVTGS GK+TTK +I+ L S V ++ G
Sbjct: 86 D-----DTLEALQRLAKAYRDE-LSIKVVGVTGSNGKTTTKDIISNLLSS-RYRVQKTEG 138
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+L+ + + + A+LEMGMS KGEI L RMARP+I V+ N+G++HL LG
Sbjct: 139 NYNNHIGLPLTLLSLKQDTEAAILEMGMSSKGEIDFLTRMARPDIAVITNIGEAHLLDLG 198
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAA 284
S E +A AK EI V V + D+PL+ L P K FG D+
Sbjct: 199 SREAIAEAKFEIINGLDKNGVLVYHGDEPLLERLVQNTPHLTVKT-FGESAKNDLYPTKI 257
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ N G + E ERE F + G H NA AA VA G+S ++ L
Sbjct: 258 RQTNEGSQFSINTEPERE---FFLSVLGKHNVFNALAAILVARELGISYDEIEDGLKKIE 314
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
+MR EL+ G KI+NDAYNA+P S RAAIDL+ ++ +++++LGDMLELG E+
Sbjct: 315 LTKMRLELVEGSKGEKIINDAYNASPTSVRAAIDLVSELQGYERKILVLGDMLELGPKEK 374
Query: 405 ESHEKILSYCCDACIDLIGLVGD 427
+ HE+I ID + +G+
Sbjct: 375 QYHEEIGKEINPHAIDYVFTIGE 397
>gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. Y412MC10]
gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. Y412MC10]
Length = 473
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 203/390 (52%), Gaps = 29/390 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F I G+ FD HEF+ L G W + V
Sbjct: 30 VGTDSRTIQPG--NLFVPIVGEKFDGHEFVESVLAGGAGAAF--------WQRDHQPVPA 79
Query: 109 NGNV----NTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ + +TL +L ++A Y SR +VG+TGS GK+T K M++ LE+ NV +
Sbjct: 80 DLPLIFVEDTLKALQSLAAAYLSESRAK--VVGITGSNGKTTVKDMVSALLETT-YNVHK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++ + DI VLEMGMSG+ EI L+ +ARP++ V+ NVG++HL
Sbjct: 137 TQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLL 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGWRRGC 277
LGS E++ARAK EI K G + + + D+PL+ + P G+R FG +
Sbjct: 197 QLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEATVKPEGLRTFTFGNQDTN 256
Query: 278 DVRLVAAQVANGGLGVQVVLEKEREMVK-FVIPSPGLHLAINACAAAAVATLFGVSLAQV 336
D G ++ R + F +P G H +NA AA AVAT G+ +
Sbjct: 257 DDYPTGLMFHARG----IIFTSSRHAGEGFSLPLLGRHNVVNALAAMAVATHLGIGDEAI 312
Query: 337 GISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDM 396
++ MR E + + G+ ++NDAYN++P + +AA+D+L D+ +R+ +LGDM
Sbjct: 313 RSGFAHLKLSSMRIEAVETAFGVTVLNDAYNSSPTAVKAAVDVLGDMKGYRRRIAVLGDM 372
Query: 397 LELGSTERESHEKILSYCCDACIDLIGLVG 426
LELG E H +I Y DL+ G
Sbjct: 373 LELGQREESFHAEIGEYLSPDNADLVFTYG 402
>gi|373115454|ref|ZP_09529627.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium 7_1_58FAA]
gi|371670397|gb|EHO35479.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium 7_1_58FAA]
Length = 463
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 218/410 (53%), Gaps = 23/410 (5%)
Query: 27 WTINEIAESVNGKIL-KWGP----PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
TI EI ++V GK+L ++G G + TD+R + + F + G+ FD H +I+
Sbjct: 4 MTIREIMDAVGGKLLGEFGDINRMVGRVETDSRTI--HAGSLFVPLVGERFDGHAYINAA 61
Query: 82 LYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L G G G + ++ G +++V+ +T +L ++A Y + +F +V +TG
Sbjct: 62 LEG-GAAGCFTQRERESYLPGKFYIKVD-----STQRALRDLAKYYKK-KFPIPVVALTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK M+A L V ++ GN NN +GV ++L+ + +IAVLE+GM+ GE
Sbjct: 115 SVGKTTTKDMVAAVLGE-KYRVLKTEGNLNNEIGVPMTLLRLSGEHEIAVLELGMNHAGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ + P++ ++ N+GDSH+E GS E + AK EIF K G V+N DDPL+
Sbjct: 174 IDYLSALVEPDVVLMTNIGDSHIEHFGSREKILEAKSEIFHHVKSGAFVVINGDDPLLNT 233
Query: 260 L--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
L +P +V G G D R V++G + ++ + IP+ G H+
Sbjct: 234 LPGKLPYAFTRV--GAGEGLDYR-AEGLVSDGKSHMTCEVKTPHNSFRVEIPALGDHMIY 290
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
AAAV FG++ Q+ + +F+P +MR LL I I+ND YNANP S RAA+
Sbjct: 291 PTLMAAAVGEHFGLTQTQIADGVLHFAPTKMRMNLLHRGDDITILNDTYNANPQSMRAAV 350
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
++L A +V +LGDM ELG H + Y A ID + VG+
Sbjct: 351 EVLSS-ARGAYKVAVLGDMFELGPLAPALHAGVGDYLGKAGIDCLVAVGE 399
>gi|420158077|ref|ZP_14664900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. MSTE9]
gi|394755225|gb|EJF38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. MSTE9]
Length = 467
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 222/413 (53%), Gaps = 24/413 (5%)
Query: 31 EIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
EIA++ G+I+ P + TD+R + P F I G+ DAH F+ P G
Sbjct: 7 EIAQACGGRIIGGDPEREVTFVTTDSRKVGPGA--LFVPIVGERVDAHRFL-PGAAEAGA 63
Query: 88 VGVIGNQVCNNWDKG---FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
V+ Q +G ++ VE +T +L +A R RF +VGVTGSVGK+
Sbjct: 64 AAVLTQQPEEQRPEGACAWIAVE-----DTRAALQQIAGAYR-FRFPIPVVGVTGSVGKT 117
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M+ALAL S NV ++ GN+N+++GV L++ + + AV+EMGMS GE+ LA
Sbjct: 118 TTKEMLALAL-SAERNVMKTEGNFNSQLGVPLTVFRLLPEHEAAVIEMGMSEFGEMARLA 176
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TV 262
++ARP V+ N+G SH+E+L + E++ K I V LN DDPL+A L T+
Sbjct: 177 QVARPTCAVMTNIGISHIENLKTQENIRAEKLHITDAFTEDSVLFLNGDDPLLAQLRGTL 236
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
P + VFFG + CDV A ++ + G + + +P PG H +NA A+
Sbjct: 237 PFHI--VFFGTQPWCDVH--AEKIVSFGGTTDFTAVSQEFRISVTLPVPGEHNVLNALAS 292
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AVA GVS + L +SP MR ++ GI +++D+YNA+P S R+++++L D
Sbjct: 293 LAVAQYLGVSPQKAAERLQTYSPPAMRQQIH-QVGGITVIDDSYNASPDSMRSSVNILMD 351
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKW 435
+ G+ + + DMLELG R++H Y ID + ++G++ + +W
Sbjct: 352 LKGTGRAIGVFADMLELGDYSRQAHFDAGVYAASRGIDALFVIGEQ-AQEIRW 403
>gi|452974253|gb|EME74074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus sonorensis L12]
Length = 456
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 141/405 (34%), Positives = 214/405 (52%), Gaps = 18/405 (4%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EIA+ G +L +G + + TD+R L K Q F + G+ F+ H F + + +
Sbjct: 5 TVKEIADMAEGTLLDQSFGERLVKGVSTDSRKL--EKEQLFIPLAGERFNGHAF-AEQAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G V+ N+ N +G + + +TL +L +A R+ +VGVTGS GK
Sbjct: 62 QAGVSAVLWNRNEPNPPEGRAVIIVD---DTLKALQRLAKAYRDE-LQVKVVGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGEI L
Sbjct: 118 TTTKDMIHAVLNT-EYKVHKTEGNYNNHIGLPLTILAMPEDAEIAVLEMGMSAKGEIDFL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
R+ARP+I V+ N+G+SHL LGS E +A AK EI + D+PL++ +
Sbjct: 177 TRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSQEGTLIYVGDEPLLSEKIIH 236
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAA 322
+ FG D +L + G +V +E F IP G H NA +A
Sbjct: 237 PPYQTKTFGEDPAFDYQLEDVKQTEEGAFFRVRGIE-----TAFFIPVLGKHNVKNALSA 291
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
A A L VS + L MR EL+ + +GI ++NDAYNA+P S +AA++L++
Sbjct: 292 IAAADLLHVSRENIAKGLKALKVTGMRLELVKTEAGIAVINDAYNASPTSMKAAVELVEQ 351
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ GK++++LGDMLELG E+ HE+I I+ + GD
Sbjct: 352 LDGYGKKLLVLGDMLELGENEKIFHEEIGQSIDPGLIEFVFAYGD 396
>gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
kaustophilus HTA426]
gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
kaustophilus HTA426]
Length = 458
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 216/407 (53%), Gaps = 21/407 (5%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE +G+ LK W + + TDTR + + + G F+ H+F+ E
Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTI--QAGNLYVPLRGATFNGHDFVQ-EAV 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ + +G V + +TL +L +A R + ++GVTGS GK
Sbjct: 62 QKGAAAVLWAEREGTPPEGVPVVVVD---DTLLALQRLAARYRE-QLGMKVIGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL S V ++ GN NN +GV L+L+ +D ++AV+EMGMSG GEI L
Sbjct: 118 TTTKDMIA-ALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VAN 259
+ARP+ V+ N+G++HL+ LGS E +A+AK EI + V + D+PL V
Sbjct: 177 TMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPK 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
L +PR V V FG D ++ GG + R + +P G H NA
Sbjct: 237 LPLPRHV--VTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRTL---FMPVLGKHYVYNA 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA AVA FG+ + SLS +MR+E++ ++ G ++NDAYNA+P S RAA+ L
Sbjct: 292 LAAIAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALML 351
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L++++ +++ +LGDMLELG E H +I +D + G
Sbjct: 352 LQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYG 398
>gi|336236998|ref|YP_004589614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
thermoglucosidasius C56-YS93]
gi|335363853|gb|AEH49533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
thermoglucosidasius C56-YS93]
Length = 458
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 208/384 (54%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ TDTR + K + + G FD H F+ L KG V+ ++ + D + V
Sbjct: 30 VSTDTRTI--QKGNLYVPLKGAKFDGHTFVQDAL-DKGASAVLWSETEGSPPADVPVIVV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L +A R + S ++G+TGS GK+TTK ++A AL + V ++ G
Sbjct: 87 D-----DTLRALQRLAHRYR-KQLSAKVIGITGSNGKTTTKDIVA-ALLATTYKVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ ++ V++AV+EMGMS GEI L+ +A P+ ++ N+G+SHL+ LG
Sbjct: 140 NLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRGCDVRLV 282
S E +A+AK EI K + V N D+PL VA+L +P V + FG D
Sbjct: 200 SREGIAQAKLEILSGLKKNGLFVYNGDEPLLASRVAHLPLPEHV--LTFGQGNKNDYYPE 257
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ + G+ + R F +P G H NA AA AVA F VS V +LS
Sbjct: 258 SVHLQANGMMFTIRQAANR---SFFLPILGKHHVYNALAALAVARFFDVSWENVQEALSR 314
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
+MR E++ + G ++NDAYNANP S +AA+ LL+++ K++ +LGDMLELG
Sbjct: 315 LQVTRMRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELTGYKKKMAVLGDMLELGDR 374
Query: 403 ERESHEKILSYCCDACIDLIGLVG 426
E E H++I + +D + G
Sbjct: 375 EVEFHQEIGAMLRPEIVDYVFTYG 398
>gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
bemidjiensis Bem]
gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
bemidjiensis Bem]
Length = 469
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 152/414 (36%), Positives = 223/414 (53%), Gaps = 17/414 (4%)
Query: 26 IWTINEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++T+NEIAE+ G+++ G + TD+R +AP + F A+ G+ FD H+FI P +
Sbjct: 3 MFTLNEIAEATGGRVIGEAAGEASAVSTDSRQVAPG--ELFVALRGERFDGHDFIIPAV- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG + + +W +G G V +TL +L ++A Y R RF+ V VTGS
Sbjct: 60 SKGVTIFLAEE---SWAAKHELPKGAGAVLVPDTLRALGDLAAYHRR-RFNLKTVCVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK M+A L G + ++ GN NN +G+ L++ + AV E+GMS GEI
Sbjct: 116 NGKTTTKEMLARILAQTGPGL-KTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A P++ ++ N +HLE+LGS+E VARAKGE+F K G V V N DDPLV+
Sbjct: 175 DRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSTC 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
V ++ FG RG +V + Q + G G L + + + G H NA
Sbjct: 235 PTHLNVTRLTFGL-RGAEVSSASIQ-SLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNAL 292
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AAAA A GV + L FSP R + L +G+ +++D+YNANP S AA+ L
Sbjct: 293 AAAAAAHALGVPGDLIRQGLEEFSPYDKRFQ-LEEVAGVTLIDDSYNANPASMAAALTTL 351
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCK 434
K++ G+ V +LGDMLELG E+H + L +D + L+G V K
Sbjct: 352 KELQGEGRLVAVLGDMLELGLGTEEAHRE-LGKLAAGNVDRLYLLGKLVEETAK 404
>gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y412MC61]
gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y412MC52]
gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y412MC61]
gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. Y412MC52]
Length = 458
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 218/407 (53%), Gaps = 21/407 (5%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE +G+ LK W + + TDTR + + + G F+ H+F+ E
Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTI--QAGNLYVPLRGATFNGHDFVQ-EAA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V V+ + +G V + +TL +L +A R + ++GVTGS GK
Sbjct: 62 QKGAVAVLWAEREGTPPEGVPVVVVD---DTLLALQRLAARYRE-QLGLKVIGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL S V ++ GN NN +GV L+L+ +D ++AV+EMGMSG GEI L
Sbjct: 118 TTTKDMIA-ALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VAN 259
+ARP+ V+ N+G++HL+ LGS E +A+AK EI + V + D+PL V
Sbjct: 177 TMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPK 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
L++PR V V FG D ++ GG + R + +P G H NA
Sbjct: 237 LSLPRHV--VTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRTL---FMPVLGKHHVYNA 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA AVA FG+ + +LS +MR+E++ ++ G ++NDAYNA+P S RAA+ L
Sbjct: 292 LAAIAVARFFGIDWEGIDAALSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALML 351
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L++++ +++ +LGDMLELG E H +I +D + G
Sbjct: 352 LQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYG 398
>gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter
propionicus DSM 2379]
gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pelobacter propionicus DSM 2379]
Length = 469
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 211/380 (55%), Gaps = 15/380 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKGFVQVE 107
+ TD+R +A Q F + G+ FD H+FI P++ KG V+ +Q + G V
Sbjct: 26 VSTDSRTVA--AGQLFVPLRGERFDGHDFI-PQVAAKGVAAVLADQSFDGEIPPGLTVVR 82
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
V+TL +L ++A R RF LVG+TGS GK+TTK M+A LE G + ++ GN
Sbjct: 83 ---VVDTLVALGDLAAAYRR-RFDLPLVGITGSNGKTTTKEMLATILEQTGPGL-KTAGN 137
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +G+ L +D + AVLEMGMS GEI LA +A P+ +VLN +HLES+GS
Sbjct: 138 LNNLIGLPQMLFRLDASHGWAVLEMGMSEPGEIDRLAEVAAPQTGIVLNACPAHLESMGS 197
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+E VARAKGE+ G ++NADDPL+A P GVR++ FG DVR A ++
Sbjct: 198 VEGVARAKGELLLRLPAGGCAIINADDPLIAGQPSPPGVRRLTFGLGD-ADVR--ATEIT 254
Query: 288 NGGLGVQVVLEKEREMV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+ G+G Q L E+V V+ S G H NA AAAA A G++ + L F P
Sbjct: 255 SLGIGGQSFLLHLGEIVLPVVLWSYGRHAVYNALAAAAAAHGLGIAAELIQSGLERFRPY 314
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R + L G+ +++D+YNANP S AA+ L ++ G+ V LGDMLE+GS E E
Sbjct: 315 DKRFQ-LEDVGGLVLIDDSYNANPASMEAALTTLGELKGGGRAFVALGDMLEMGSNEAEL 373
Query: 407 HEKILSYCCDACIDLIGLVG 426
H + L A D + L G
Sbjct: 374 H-RALGVRAAAVADRLYLCG 392
>gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Alkaliphilus oremlandii OhILAs]
gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Alkaliphilus oremlandii OhILAs]
Length = 464
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 216/409 (52%), Gaps = 23/409 (5%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I IA + NG I+K G G + TDTR + K F + G+ FD H FI E
Sbjct: 6 IQAIARACNGTIIKKGSVDTIGSVSTDTRTI--QKGSLFVPLIGEKFDGHTFIE-EAIKN 62
Query: 86 GCVGVIGNQVCNNW------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
G V + N D ++V+ +TL +L ++ Y R F +GVTG
Sbjct: 63 GAQAVFVQEGHNTKTIQAFNDVWLIEVK-----DTLKALQAISVYYR-KLFPIPFIGVTG 116
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK++TK +I+ L S NV ++ GN+NN +G+ L+L ++ I+VLEMGMS GE
Sbjct: 117 SVGKTSTKDLISGVL-SGKFNVHKNLGNFNNEIGLPLTLFNLEENHQISVLEMGMSSFGE 175
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I +L M PEI V+ N+G SH+E LGS E + +AK EI K G+ ++N DD +
Sbjct: 176 IRDLVDMVHPEIGVITNIGVSHIEHLGSKEGILKAKMEIASNFKEGNYLLVNGDDEYLRC 235
Query: 260 LTV-PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+ + +F+G D ++ + G G +E E V F I G+H N
Sbjct: 236 IHKDDKDYTVIFYGLSSTNDFYPMSVEDL-GEEGSAFTVEINGEAVPFKIRQLGIHNVYN 294
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA + + ++ ++ L F P +MR E ++++ +KI+NDAYNA+P S +AA+D
Sbjct: 295 ALAAVWIGLKYHMTFEEIQRGLDGFQPSKMRLE-VITKGRMKIINDAYNASPDSMKAALD 353
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+L + N +++ +LG+M E+GS E H + +Y ID++ VG+
Sbjct: 354 VLDHMKSN-RKIAVLGNMFEMGSFSEEGHRSVGAYFAKKNIDILVTVGE 401
>gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Halothermothrix orenii H 168]
gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Halothermothrix orenii H 168]
Length = 461
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 137/405 (33%), Positives = 215/405 (53%), Gaps = 15/405 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
++ EI +V+GKI++ P I D+R + P F AI G+ FD H FI PE
Sbjct: 5 SLAEIRNAVSGKIIQGDPKSKITDISIDSRTINPG--DMFVAIIGERFDGHSFI-PEAVS 61
Query: 85 KGCVGVIGNQVCNNWDK-GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG +I + + G + VE +T +L ++A Y R ++G+TGS GK
Sbjct: 62 KGARALIVDHSIKAYPGVGIILVE-----DTTRALQDLARYHRMLIKGLTVIGITGSAGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA L+ NV ++ GN NN G+ L+L+ +D +IAVLEMGMS GEI L
Sbjct: 117 TTTKDMIASVLKE-KYNVTKTRGNLNNYYGLPLTLLSLDGDEEIAVLEMGMSKLGEIELL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-V 262
A +++P+I V+ NVG +HLE+L ++ +VAR K E+ + + +LN D+ V ++
Sbjct: 176 ASISKPDIGVITNVGPTHLENLKTVGNVARGKRELIEGLPTNGLAILNYDNKYVRDMKDY 235
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
G + +++G+ DV +V + + + E + + PG H NA AA
Sbjct: 236 VEGKKVIYYGFSPEADVYAEHIKVDEKNKNISFIAHYKTEKERITLQKPGKHNVYNALAA 295
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AVA V + L N +R ++ + I ++ND YNANP+S +AAI+ D
Sbjct: 296 IAVARYLRVDWGGIKNGLYNIDLSSLRWDVRDLGNEITLINDTYNANPLSMKAAIEATFD 355
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
IA + + +LG MLELG E ++H + Y + +D++ VG+
Sbjct: 356 IAQE-RVITVLGGMLELGDMEEKAHVDLGRYVAERNVDVLITVGE 399
>gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
sp. M21]
gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
sp. M21]
Length = 467
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 150/406 (36%), Positives = 221/406 (54%), Gaps = 17/406 (4%)
Query: 26 IWTINEIAESVNGKILKWG--PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++T+NEIAE+ G+++ G + TD+R +AP + F A+ G+ FD H+FI P +
Sbjct: 1 MFTLNEIAEATGGRMIGEGAGEASAVSTDSRQVAPG--ELFVALRGERFDGHDFIIPAV- 57
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGS 140
G+ +W + +G G V +TL +L ++A Y R RF+ V VTGS
Sbjct: 58 ---SQGITVFLAEESWAERHELPKGAGAVLVPDTLRALGDLAAYHRR-RFNLKTVCVTGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK M+A L G + ++ GN NN +G+ L++ + AV E+GMS GEI
Sbjct: 114 NGKTTTKEMLARILAQTGPGL-KTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEI 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A P++ ++ N +HLE+LGS+E VARAKGE+F K G V V N DDPLV+
Sbjct: 173 DRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDPLVSAC 232
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
V ++ FG RG +V + Q + G G L + + + G H NA
Sbjct: 233 PTHLNVTRLTFGL-RGAEVSSASIQ-SLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNAL 290
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AAAA A GVS + L FSP R + L +G+ +++D+YNANP S AA+ L
Sbjct: 291 AAAAAAHALGVSGEVIRQGLEEFSPYDKRFQ-LEEVAGVTLIDDSYNANPASMAAALTTL 349
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
K++ G+ V +LGDMLELG E+H + L +D + L+G
Sbjct: 350 KELQGEGRLVAVLGDMLELGLGTEEAHRE-LGKLAAGSVDRLCLLG 394
>gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
27560]
gi|149736242|gb|EDM52128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium ventriosum ATCC 27560]
Length = 452
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 219/389 (56%), Gaps = 19/389 (4%)
Query: 27 WTINEIAESVNG-----KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
T+ IA++ NG + LK + D+R++ + G D H+FI P+
Sbjct: 4 MTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDG--YLYLPFVGARVDGHDFI-PQ 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
++ KG + + + NN +++VE + +L ++A + R + S ++G+TGSV
Sbjct: 61 VFDKGALCTLSEKDLNNPKGPYIKVE-----SVATALKDIAEFYR-KQLSCKIIGITGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK +IA LE V ++ GN+NN +G L+++ I ++AV+EMG+S E+
Sbjct: 115 GKTSTKEIIASVLEE-KFKVLKTEGNYNNEIGEPLTILKIRDEHEVAVIEMGISDFEEMH 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA+++RP++ V+ N+G HLE+LG + V +AK E+F + VLN DD ++N+
Sbjct: 174 RLAKVSRPDVCVITNIGTCHLENLGDRDGVFKAKTEMFDYASKDCFVVLNGDDDKLSNVK 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
G VFFG DV + + + G G +V ++ + + VIP PG H+ NA A
Sbjct: 234 EVNGHAPVFFGIDTDRDVMAIKYE-SLGIQGTKVKIKYFDKELDTVIPIPGYHMIYNAMA 292
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A + + FG++L ++ + N + R+ + + +GI +++D YNANP+S +A+I++L
Sbjct: 293 AVCIGSYFGMTLDEIDSGIRNLKAIGGRNNIFTT-NGITVIDDCYNANPMSMKASINVLS 351
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKI 410
NG++V ILGDM ELG ++ H+++
Sbjct: 352 --QANGRKVAILGDMFELGENSKKLHKEV 378
>gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
17241]
gi|167665963|gb|EDS10093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerotruncus colihominis DSM 17241]
Length = 452
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/402 (35%), Positives = 209/402 (51%), Gaps = 27/402 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
T+ EIA ++ G + TDTR L P F A+ G+ FD H++I+ L G
Sbjct: 2 TLKEIAAAIGADGTFEGAVDCVSTDTRALPPG--CLFVALEGERFDGHDYITAALRGGAA 59
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
V + ++ G V NT +L+++A A +RF VG+TGSVGK+TTK
Sbjct: 60 CAVAHER--RDYGAGPVMY----VKNTQRALMDLA-RAYRARFDIHCVGITGSVGKTTTK 112
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
MIA A+ S G ++ GN NN +G+ +L+G+ R + AV+EMGM G GEI LA +A
Sbjct: 113 DMIAAAV-SAGFQTLKTEGNLNNEIGLPKTLLGLTRGHEAAVVEMGMQGFGEIAALADVA 171
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR-GV 266
RP + V+ N+G SH+E LGS E++ +AK E+ G L DD L+ +++PR V
Sbjct: 172 RPTLGVITNIGVSHIEQLGSRENIMKAKLELADALPDGAPLFLCGDDDLLKKVSIPRLDV 231
Query: 267 RKVFFGWR------RGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
R F+G D+R AQ A L+ V IP GLH NA
Sbjct: 232 R--FYGVENPACALHAADIREADAQTA-------FTLQYPGGQVGATIPCIGLHNVRNAV 282
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA V G+ + +L+ + P MR + +V + +V D YNA+P S RAA+ L
Sbjct: 283 AACGVGMALGIPAEKCAAALAAYVPSGMR-QRVVHWGSVTVVEDCYNASPDSMRAALTTL 341
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+ C G+R+ +LG MLELG+ + +H ++ A +DL+
Sbjct: 342 SAMRCAGRRIAVLGGMLELGAYSQAAHREVGRAAAGAGVDLL 383
>gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermosediminibacter oceani DSM 16646]
gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermosediminibacter oceani DSM 16646]
Length = 461
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 214/399 (53%), Gaps = 25/399 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T E+A++ G++ K + + TD+R L F + G FD H+FI
Sbjct: 4 LTYEEVAKATGGRVEKSFSGEVLGVSTDSRSL--KHGDLFVPLVGAKFDGHDFIKNAFEA 61
Query: 85 KG----CVGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
C ++V N +K + V+ +T N+L+ +A + R S FS V +TG
Sbjct: 62 GASATLCAEDKRDRVLNLTLEKPVIFVD-----DTQNALLRLAGFYR-SFFSIPFVAITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK MIA L + V ++ GN+NN +G+ L+L ++ + V+EMGMSG GE
Sbjct: 116 SVGKTTTKEMIAAVL-TRRYRVLKNEGNFNNEIGLPLTLFRLEDH-QVGVVEMGMSGFGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ + +P + V+ N+G SH+E LGS E++ARAK EI + D+ VLNAD P
Sbjct: 174 ISRLSAIVKPHVAVITNIGVSHIEKLGSRENIARAKLEIIEPLSKDDLVVLNADSP---E 230
Query: 260 LTVPRGV---RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L RG R V+FG +G D+R V+ G GV + + IP G H
Sbjct: 231 LYAKRGTLTPRTVYFGIEKG-DIR-ATDIVSMGRDGVIFKVTGDIPEFSVEIPLAGTHNV 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
NA AA AV FG+S+ ++ L P +MR E + G +++D YNA+P S +AA
Sbjct: 289 YNALAAIAVGLEFGLSIDEIRRGLMELKPTKMRLEFKKTPFGAVVIDDCYNASPDSMKAA 348
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCC 415
+++L+++ ++V ILGDMLELG ++HE+I Y
Sbjct: 349 LNVLRELGEGRRKVAILGDMLELGDYAVKAHEEIGRYAA 387
>gi|375007037|ref|YP_004980668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Geobacillus thermoleovorans CCB_US3_UF5]
gi|359285884|gb|AEV17568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Geobacillus thermoleovorans CCB_US3_UF5]
Length = 458
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/407 (34%), Positives = 215/407 (52%), Gaps = 21/407 (5%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE +G+ LK W + + TDTR + + + G F+ H+F+ E
Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTI--QAGNLYVPLRGATFNGHDFVQ-EAV 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ + +G V + +TL +L +A R + ++GVTGS GK
Sbjct: 62 QKGAAAVLWAEREGTPPEGVPVVVVD---DTLLALQRLAARYRE-QLGMKVIGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL + V ++ GN+NN +GV L+L+ +D ++AV+EMGMSG GEI L
Sbjct: 118 TTTKDMIA-ALLATNYRVQKTEGNFNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VAN 259
+ARP+ V+ N+G++HL+ LGS E +A+AK EI + V + D+PL V
Sbjct: 177 TMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPK 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
L +PR V V FG D ++ GG + R + +P G H NA
Sbjct: 237 LPLPRHV--VTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRTL---FMPVLGKHHVYNA 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA AVA FG+ + SLS +MR+E++ ++ G ++NDAYNA+P S RAA+ L
Sbjct: 292 LAAIAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALTL 351
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L ++ +++ +LGDMLELG E H +I +D + G
Sbjct: 352 LGELGGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYG 398
>gi|448236521|ref|YP_007400579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Geobacillus sp. GHH01]
gi|445205363|gb|AGE20828.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Geobacillus sp. GHH01]
Length = 458
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 214/407 (52%), Gaps = 21/407 (5%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE +G+ LK W + + TDTR + + + G F+ H+F+ E
Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTI--QAGSLYVPLRGATFNGHDFVQ-EAV 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ + +G V + +TL +L +A R + ++GVTGS GK
Sbjct: 62 QKGAAAVLWAEREGTPPEGVPVVVVD---DTLLALQRLAARYRE-QLGMKVIGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL S V ++ GN NN +GV L+L+ +D ++AV+EMGMSG GEI L
Sbjct: 118 TTTKDMIA-ALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VAN 259
+ARP+ V+ N+G++HL+ LGS E +A+AK EI + V + D+PL V
Sbjct: 177 TMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPK 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
L +PR V V FG D ++ GG + R + +P G H NA
Sbjct: 237 LPLPRHV--VTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRTL---FMPVLGKHHVYNA 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA AVA FG+ + SLS +MR+E++ ++ G ++NDAYNA+P S RAA+ L
Sbjct: 292 LAAIAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALTL 351
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L ++ +++ +LGDMLELG E H +I +D + G
Sbjct: 352 LGELGGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYG 398
>gi|404493852|ref|YP_006717958.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Pelobacter
carbinolicus DSM 2380]
gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Pelobacter
carbinolicus DSM 2380]
Length = 463
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 205/382 (53%), Gaps = 17/382 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R L F + G FD H+FI+ + G V + +V ++V
Sbjct: 28 VSTDSRSL--RAGDLFVPLRGPRFDGHDFIAQAVQ-SGAVACLSEEVIAGLPVPVIRV-- 82
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIA--LALESLGVNVFQSYG 166
+TL +L ++A R + F G +V VTGS GK+TTK M+A LAL G ++ G
Sbjct: 83 ---TDTLRALGDLAAAVRQA-FDGPVVAVTGSSGKTTTKEMLAGILALRGEG---LKTEG 135
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ +L ++ AVLE+GMS +GEI LA ++RP+I V+ NVG +HLE+L
Sbjct: 136 NFNNLIGLPHTLFRLEADHHWAVLELGMSARGEIARLAEISRPDIGVITNVGPAHLETLH 195
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+L+ VARAKGE+F G V+N DDP V L V GVR++ +G G D + A +
Sbjct: 196 NLQGVARAKGELFAALPAGGTAVINGDDPRVLQLPVANGVRRLIYGC--GSDAEVRAEDI 253
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
A G G L E + PG + NA AAAA A V AQ+ L F
Sbjct: 254 AVDGHGTHFCLLLAGESWPVHLSVPGRYNVHNALAAAAAAHALKVGGAQIVEGLEAFRSC 313
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R + SG ++ D YNANP++ +AA+ L ++ +G+R+ +LGDMLELG E
Sbjct: 314 AGRMAVAELASGATLLEDFYNANPLAVKAALSALDEMPGSGRRIAVLGDMLELGDAASEM 373
Query: 407 HEKILSYCCDACIDLIGLVGDR 428
H + C+DL+ L+G+R
Sbjct: 374 HRQT-GLDASKCVDLLILLGER 394
>gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. C56-T3]
gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. C56-T3]
Length = 458
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 216/407 (53%), Gaps = 21/407 (5%)
Query: 28 TINEIAESVNGKILK--WGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +IAE +G+ LK W + + TDTR + + + G F+ H+F+ E
Sbjct: 5 TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTI--QAGNLYVPLRGATFNGHDFVQ-EAA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ + +G V + +TL +L +A R + ++GVTGS GK
Sbjct: 62 QKGAAAVLWAEREGTPPEGVPVVVVD---DTLLALQRLAARYRE-QLGLKVIGVTGSNGK 117
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA AL S V ++ GN NN +GV L+L+ +D ++AV+EMGMSG GEI L
Sbjct: 118 TTTKDMIA-ALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERL 176
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VAN 259
+A+P+ V+ N+G+SHL+ LGS E +A+AK EI + V + D+PL V
Sbjct: 177 TMIAKPDAAVITNIGESHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPK 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
L +PR V V FG D ++ GG + R + +P G H NA
Sbjct: 237 LPLPRHV--VTFGAGEQNDYYPTDVRIEAGGTSFVINALPGRTL---FMPVLGKHHVYNA 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA AVA FG+ + SLS +MR+E++ ++ G ++NDAYNA+P S RAA+ L
Sbjct: 292 LAAIAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALML 351
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L++++ +++ +LGDMLELG E H +I +D + G
Sbjct: 352 LQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYG 398
>gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Subdoligranulum variabile DSM 15176]
gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Subdoligranulum variabile DSM 15176]
Length = 453
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 199/390 (51%), Gaps = 20/390 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F G+ D H F + Y G +I N + V
Sbjct: 24 VVTDSRKVEPGC--VFVCFPGERVDGHTFAA-GAYQNGAAYIIANHPVDG-------VPA 73
Query: 109 NGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ V +S + M A N R FS ++GVTGSVGK+TTK L + G N ++ G
Sbjct: 74 DRTVVVPDSALAMVRMASNYRMLFSPRIIGVTGSVGKTTTKEFCYAVLSAFG-NTLKTEG 132
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV +L ++ A + AV+EMGM GEI L R RP ++ +G SHLE+LG
Sbjct: 133 NQNNEIGVPNTLFRLESATEYAVVEMGMDHAGEIERLTRCVRPSAGIITMIGVSHLENLG 192
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+ E++ +AK EI G VLNAD+ L+ VP +R V+FG + DVR A +
Sbjct: 193 TRENILKAKMEICAGLPDGAPLVLNADNDLLPTAQVPGRLRAVWFGIEQEADVR--AENI 250
Query: 287 ANGGLGVQVVLEKEREMVKF--VIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G G L +RE +F IP+ GLH +A +A A AT G+ A +LS +
Sbjct: 251 QTGAQGTTFTL-VDREYGRFPVSIPTAGLHTVYDALSAYAAATRLGLDPANCAKALSRYQ 309
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR +V R G+ ++ D YNA+P S +AAI +LK + N +++ +LGDMLELG
Sbjct: 310 TTGMRQH-IVERGGVTVIEDCYNASPDSMKAAISVLKALP-NKRKIALLGDMLELGDASE 367
Query: 405 ESHEKILSYCCDACIDLIGLVGDRVVVQCK 434
E H + +A +D + G R V +
Sbjct: 368 EGHRHTGEWVAEAGVDTLIAYGPRSAVMAE 397
>gi|357037244|ref|ZP_09099044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum gibsoniae DSM 7213]
gi|355361409|gb|EHG09164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum gibsoniae DSM 7213]
Length = 462
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 210/392 (53%), Gaps = 20/392 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ E+ ++ G++L+ G + +CTDTR +AP FFA+ G++FDAH+F+ +
Sbjct: 4 MTVGEVYRAIGGRLLQ-GDENMTVSRVCTDTRQIAPG--DLFFALRGENFDAHDFVDQAI 60
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G V+ V ++V +TL L +A Y R +F+ +VG+TGS G
Sbjct: 61 AGGAGALVVSRDVDVQPRVPLIRVG-----DTLAGLQALAAYHRR-QFAVPVVGITGSSG 114
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+T K M+A L++ +V ++ GN+NN +G+ L+L+ AV+EM M G GEI
Sbjct: 115 KTTIKDMVASVLQTR-WSVLKTRGNFNNEIGLPLTLLEFSPDHGAAVVEMAMRGPGEINA 173
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L ++ARP V+ N+G +HLE LGSLE++ARAKGE+ + +L D L
Sbjct: 174 LCQIARPTCAVITNIGTAHLERLGSLENIARAKGELLEHISADGFALLPGDSHLAREQAR 233
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
+ +FFG G D+ A +V G G + + + +P PG H NA AA
Sbjct: 234 RCHGQVLFFGLEPGMDI--YAREVRREGSGNRFTAVMGDTLHEIYLPLPGKHNVQNALAA 291
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELL---VSRSGIKIVNDAYNANPISTRAAIDL 379
V + G++ Q LS + MR +++ ++ I IVND YNANP S AA+
Sbjct: 292 FGVGIMLGLTPEQAAAGLSLVTLSGMRLDIVDATINGKTITIVNDVYNANPDSACAALQS 351
Query: 380 LKDIACNGKR-VVILGDMLELGSTERESHEKI 410
L++IA +R V +LGDMLELGS E H ++
Sbjct: 352 LEEIAAGTRRSVAVLGDMLELGSGAVEGHRRV 383
>gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Desulfotomaculum acetoxidans DSM 771]
gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
acetoxidans DSM 771]
Length = 457
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 132/406 (32%), Positives = 221/406 (54%), Gaps = 18/406 (4%)
Query: 27 WTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+++EIA + + ++ G +CTDTR L P + FFA+ G+++DA++F+ +
Sbjct: 4 MSLDEIAGVIGARQVQKGSVNEVSSVCTDTRRLKPG--ELFFALKGENYDANDFVE-QGK 60
Query: 84 GKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
K V+ ++V + + G +QV+ ++L +L +A Y R F+ ++GVTGS
Sbjct: 61 AKQAAAVVVSRVLSAVNSGTAVLQVQ-----DSLKALQALARYNRQ-LFNIPVIGVTGSN 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK MIA L + ++ GN+NN +G+ L+L+ +D + AV+EM M G+GEI
Sbjct: 115 GKTSTKDMIASVL-GVRYKTLKTSGNYNNEIGLPLTLLSMDSSHQTAVVEMAMRGRGEID 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L ++ARP V+ +G++HLE LGS E++A AKGE+ Q +L+ + L L
Sbjct: 174 FLCQLARPTGAVITCIGEAHLELLGSRENIAAAKGEMLQHIGPQGFALLSGNSSLTRQLA 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+ +F+G D+R Q + G V+ + +E +P PG H IN+ A
Sbjct: 234 GLTAGKVLFYGTEPQLDIRACDIQTGSNGSKFTVITSRGQE--DIFLPIPGRHNIINSLA 291
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A V G+SL ++ L+ MR E ++ +GI ++ND YNANP S++AA+ L
Sbjct: 292 AVGVGLELGLSLPEIKAGLAEVVLTGMRME-IIKINGITVINDVYNANPDSSKAALTTLA 350
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
D+ N +++ +LG M ELG E H ++ A + + VG+
Sbjct: 351 DLGHNRRKIAVLGSMFELGCRAVEGHREVGRAAFAAGTEYLVTVGE 396
>gi|334133989|ref|ZP_08507524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus sp. HGF7]
gi|333608497|gb|EGL19794.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus sp. HGF7]
Length = 474
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 145/416 (34%), Positives = 217/416 (52%), Gaps = 44/416 (10%)
Query: 25 PIWTINEIAESVNGKILKWGPPG-----------IICTDTRILAPNKNQWFFAITGQHFD 73
P+ TI E+A K+L PPG + TDTR +AP F + G+ FD
Sbjct: 5 PLTTIAELA---GAKLLM--PPGPDNGADGIVIDAVSTDTRTIAPG--SLFVPLVGERFD 57
Query: 74 AHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV-----NTLNSLVNMACYARNS 128
HEF +P+ KG + W + + G +TL +L +A R S
Sbjct: 58 GHEF-APDAAAKGASAAL-------WLESREEGRPEGLPLLLVDDTLTALQKLAHAYRKS 109
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ +VG+TGS GK+TTK M+ L ++ NV ++ GN NN +G+ L+L+ +D ++A
Sbjct: 110 -LNVKVVGITGSNGKTTTKDMMGAVLGTV-YNVHRTKGNLNNHIGLPLTLLQLDDTTEVA 167
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
V+EMGMSG+GEI L+ +A P+I V+ +GD+HL LGS E++ARAK EI K G
Sbjct: 168 VVEMGMSGRGEIELLSEIAEPDIAVITMIGDAHLLQLGSREEIARAKTEILSGLKDGGTY 227
Query: 249 VLNADDPL----VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL-----EK 299
V + D+PL + ++ P + ++ FG RG L + G G + E
Sbjct: 228 VFHGDEPLLPLVLPDMKQPARLSQIRFG--RGHTNDLYPTFIRMDGDGTHFSINPRGSES 285
Query: 300 EREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI 359
+++ K+ IP G H NA AA AV T GV A + L+ MR E ++ SG+
Sbjct: 286 DKDAQKYYIPLLGEHNVDNALAAIAVGTALGVPDADIRRGLAGMQMTGMRIEKRLTSSGV 345
Query: 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCC 415
++NDAYNA+P S +A+I L++ + ++ V+L DMLELG E H +I S
Sbjct: 346 TVLNDAYNASPSSMKASIRLVEQLEGYPRKYVVLADMLELGEDEIRYHREIGSLLS 401
>gi|384049182|ref|YP_005497199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus megaterium WSH-002]
gi|345446873|gb|AEN91890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus megaterium WSH-002]
Length = 460
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 129/401 (32%), Positives = 206/401 (51%), Gaps = 19/401 (4%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++A + G + G + DTR + + + I G+ F+ H F+ +
Sbjct: 5 TLKQLAAMIPGSVFHSGNEAAVIEGVSIDTRTI--QQGNLYIPIKGERFNGHAFVDKAIE 62
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V + N+ N D + V+ +TL +L +A R+ +VG+TGS
Sbjct: 63 N-GAVATLWNKDEENPPTDISVILVD-----DTLEALQQLAKSYRH-ELDIKVVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+T K M+ L++ V ++ GN+NN +G+ L+++ +D DIAVLEMGMS +GEI
Sbjct: 116 GKTTAKDMVKAVLDTT-YRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A P++ ++ N+G+SHL+ LGS + +A AK EI V N D+PL+ +
Sbjct: 175 FLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEPLLTSRV 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
V V FG D L + ++ LG + +E F IP G H NA +
Sbjct: 235 VNPVFETVTFGSSEQND--LYPSAISAEELGTTFTVSRET-TYSFFIPVLGKHNVHNALS 291
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A AV FG+ + L MR EL+ G+ +NDAYNA+P S +AAI L+
Sbjct: 292 AIAVGHYFGLDNKTIAKGLKELKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMH 351
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
D+ +++++LGDMLELG E+E H+++ + ID +
Sbjct: 352 DLEGYKQKILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYV 392
>gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. WCH70]
gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
sp. WCH70]
Length = 463
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 201/382 (52%), Gaps = 17/382 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + + + + G F+ H F+ + KG V+ + K +
Sbjct: 35 VSTDTRTI--QQGNLYVPLKGAKFNGHAFVQDAI-DKGASAVLWAETEGTPPKDVPVIIV 91
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +TL +L +A R + S ++G+TGS GK+TTK MIA AL + V ++ GN
Sbjct: 92 D---DTLRALQRLAHRYRK-QLSVKVIGITGSNGKTTTKDMIA-ALLATTYKVQKTEGNL 146
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ ++AV+EMGMS GEI L+ +A P+ V+ N+G+SHL+ LGS
Sbjct: 147 NNHIGVPLTLLRLEEDTEMAVVEMGMSNFGEIELLSNIAEPDAAVITNIGESHLQELGSR 206
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVAN----LTVPRGVRKVFFGWRRGCDVRLVAA 284
E +A+AK EI K + V + D+PL+ N L +P V + FG D A
Sbjct: 207 EGIAQAKLEILSGLKKNGLFVYHGDEPLLVNRVPDLPLPEHVLR--FGQGSDNDYYPKAV 264
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
V G V R F +P G H NA AA AVA F VS ++ + S
Sbjct: 265 HVQANGTTFTVHQAPNR---SFFLPILGKHHVYNALAAIAVARFFHVSWEKIQEAFSQLQ 321
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
+MR EL+ ++ G I+NDAYNANP S +AA+ LL ++ K++ +LGDMLELG E
Sbjct: 322 VTRMRMELIETKKGWTIINDAYNANPTSMKAALQLLHELTGYEKKIAVLGDMLELGDQEV 381
Query: 405 ESHEKILSYCCDACIDLIGLVG 426
E H +I + +D + G
Sbjct: 382 EFHREIGAMLRPEMVDYVFTYG 403
>gi|404371430|ref|ZP_10976735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium sp. 7_2_43FAA]
gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium sp. 7_2_43FAA]
Length = 453
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 133/408 (32%), Positives = 226/408 (55%), Gaps = 23/408 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
++NE+ E++NG+++ G +C DTR + KN +FAI G+ F+ ++F+ E +
Sbjct: 3 LSLNELLEAMNGELIVKGKTDFNSVCIDTRKIE--KNNIYFAINGERFNGNKFV-IEAFS 59
Query: 85 KGCVGVIGNQVC---NNWD--KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG I +++ NN D + ++VE +T +L+N+A Y R + ++GVTG
Sbjct: 60 KGASIAIVDEILFDLNNTDNLQTVIKVE-----DTEKALLNLANYYR-KKLGLKVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK +IA A S VF++ GN+NN++G+ L ++ +D ++D+AVLEMGMS GE
Sbjct: 114 SCGKTSTKDLIA-AFLSEKYKVFKTKGNFNNQIGLPLMILELDSSIDVAVLEMGMSNLGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I LA ARP+I V+ N+G SH+E+L + E++ +AK EIF + ++N +D +
Sbjct: 173 IDVLANCARPDIAVITNIGLSHIENLKTQENILKAKSEIFNYFDETNTLIINGEDENLLK 232
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ + + G+ DV + V + E + F IP G H +N+
Sbjct: 233 IK-DKCFEILKIGYNHEYDVYAFNIILEEDKTTFTVKDKNEESI--FTIPMAGKHNILNS 289
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
A VA V+ ++ + N MR + ++ R+ I I+ND YNA+P S ++++D+
Sbjct: 290 MLAVEVAKKLNVTFDEMKKGIKNLEATSMRLQ-VIKRNKITIINDCYNASPDSMKSSMDV 348
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
L G+++ ILG M ELG +SH ++ +Y +DL+ VG+
Sbjct: 349 LSSYKT-GRKIAILGTMNELGEEAVKSHIEVGNYAL-TKVDLLIAVGE 394
>gi|373859818|ref|ZP_09602541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus sp.
1NLA3E]
gi|372450461|gb|EHP23949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus sp.
1NLA3E]
Length = 458
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 198/380 (52%), Gaps = 15/380 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGFVQVE 107
+C DTR ++ F G+ D H F+ L + V N V VE
Sbjct: 30 VCIDTRKIS--HGNLFIPFKGEKADGHCFVEQALKQGAAAALWQKDVPNPPLHLPIVVVE 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A RN ++G+TGS GK+TTK M A L SL V ++ GN
Sbjct: 88 -----DTLAALQELAKSYRN-ELDIKVIGITGSNGKTTTKDMTA-NLLSLKYKVQKTEGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++G+D ++AVLEMGMSG+GEI L ++ARP+ ++ N+G+SHL LGS
Sbjct: 141 YNNHIGLPLTILGLDEDTNVAVLEMGMSGRGEIQFLTKLARPDAVIITNIGESHLLDLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKV-FFGWRRGCDVRLVAAQV 286
E +A AK EI + V D+PL+ N G R V FG D L ++
Sbjct: 201 REGIAEAKLEIISGLAEDGLIVYLGDEPLLRNRLENTGERNVKTFGRNENND--LYPIEM 258
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+ G + EM F +P G H +NA AA A FGV ++ + ++
Sbjct: 259 SQNDKGNLFKINGVSEM--FSLPVLGTHNVLNALAAMLTAAYFGVPFEKMNVGFASLKLT 316
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR EL+ +G KI+NDAYNA+P S AAI+L+ +++ K++++LGDMLELG E E
Sbjct: 317 NMRMELVDGENGEKIINDAYNASPTSMNAAIELISNLSGYQKKILVLGDMLELGPQEEEF 376
Query: 407 HEKILSYCCDACIDLIGLVG 426
H KI ID + G
Sbjct: 377 HFKIGQSIDPNKIDYVFTYG 396
>gi|336425900|ref|ZP_08605914.1| hypothetical protein HMPREF0994_01920 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336011365|gb|EGN41325.1| hypothetical protein HMPREF0994_01920 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 475
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/409 (33%), Positives = 225/409 (55%), Gaps = 30/409 (7%)
Query: 27 WTINEIAESVNGKIL-----------KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAH 75
T+ IA++ NG+++ G++ D+R +N F A G+ D H
Sbjct: 14 MTLTNIADACNGRLIYPAENSRKETEHLEAAGVV-IDSR--KAGENFIFVATKGERVDGH 70
Query: 76 EFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLV 135
FI P+++ KG +GV+ + + + VE ++ +L + + R + +V
Sbjct: 71 RFI-PDVFAKGALGVVCEKEPKSLPGPCIVVE-----DSFEALKQIGEFYRQ-QLPVKVV 123
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK++TK +A L S+ V ++ GN+NN VGV L+++ + ++AVLEMG++
Sbjct: 124 GITGSVGKTSTKEFVAAVL-SMKYKVHKTLGNYNNEVGVPLTVLSMPEDTEVAVLEMGIN 182
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKL-GDVCVLNADD 254
GE+ L+R+ARP+I ++ N+G HLE LGS E + +AK E+F K G VC+ N DD
Sbjct: 183 HFGEMHNLSRIARPDICIMTNIGQCHLEFLGSREGILKAKSEMFDFMKEDGSVCI-NGDD 241
Query: 255 PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGL 313
++A++ +G + V FG C R+ A + GL G + V+ E IP PG
Sbjct: 242 DMLASIKEVKGKKPVTFGLSEQC--RVYATDIKGKGLFGSEAVIHGNGESFAVQIPLPGE 299
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H+ NA AAAA L G++ ++ ++ V RS ++ + +++D YNANP+S
Sbjct: 300 HMVYNALAAAAAGLLLGLTPEEIRDGIAAVESVSGRSHIVKLPDKV-LIDDCYNANPVSM 358
Query: 374 RAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
AAIDLL + +G+RV ++GDM ELG E+E H ++ Y D ++ I
Sbjct: 359 EAAIDLL--LQADGRRVAVMGDMFELGEQEKEMHARVGKYAADKGVECI 405
>gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 456
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 211/375 (56%), Gaps = 16/375 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + F I G+ DAH+FI P++ G + + +V +N D ++ VE
Sbjct: 31 VITDSR--KAEEGCLFVPIVGERVDAHKFI-PQVMEAGALATLSERVLDNADFPYIAVE- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L ++ ++A + + +VG+TGSVGK++TK +IA L + ++ GN+
Sbjct: 87 ----SSLQAVKDIAEFYL-KQLQIPVVGITGSVGKTSTKEVIASVLNQ-KYHTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + +IAVLEMG+S GE+ LA++ARP+ V+ N+G HLE+LG
Sbjct: 141 NNELGLPLTVFRLRDGDEIAVLEMGISDFGEMTRLAQIARPDTCVITNIGTCHLENLGDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
V +AK EIF+ + VLN DD + + ++ VFFG C V ++ +
Sbjct: 201 NGVLKAKTEIFKFLRPEGHIVLNGDDDKLITVKEYEKIKPVFFGMSNECQV--YGDKIVS 258
Query: 289 GGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
GL G+ + IP PG H+ NA AAAAV ++G++ Q+ + + P+
Sbjct: 259 RGLKGMTCTIHLGDTAFTVDIPMPGRHMVYNALAAAAVGNIYGLTTDQIKAGIESLEPIS 318
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R ++ + + IV+D YNANP+S +A++D+L+D A G+++ +LGDM ELG E + H
Sbjct: 319 GRFRMIETDKFL-IVDDCYNANPMSMKASLDVLQDGA--GRKIAVLGDMGELGENEVQLH 375
Query: 408 EKILSYCCDACIDLI 422
E++ + ID++
Sbjct: 376 EEVGEHAGKCDIDVL 390
>gi|310642991|ref|YP_003947749.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
[Paenibacillus polymyxa SC2]
gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus polymyxa SC2]
gi|392303805|emb|CCI70168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Paenibacillus polymyxa M1]
Length = 467
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 204/389 (52%), Gaps = 35/389 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----- 103
+ TD+R P F + G+ FD H ++ + +G + W K
Sbjct: 29 VFTDSR--RPQSLGLFVPLVGERFDGHHYVQQIVSERGATAYL-------WQKDHGAPPT 79
Query: 104 ---VQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
++VE +TL +L ++A Y R + S +VG+TGS GK+TTK ++ AL
Sbjct: 80 VNAIEVE-----DTLEALQHLAAAYLRETGVS--VVGITGSNGKTTTKDIVN-ALLGTTF 131
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V ++ GN+NN +G+ L+++ + + DI VLEMGMSG+GEI LA +A+P++ V+ N+G+
Sbjct: 132 KVHKTEGNYNNHIGLPLTVLSMPQDTDILVLEMGMSGRGEIRLLANIAQPDVAVITNIGE 191
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGW 273
SHL LGS ++ARAK EI K G + + N D+PL+ + P G+ FG
Sbjct: 192 SHLLQLGSRTEIARAKLEIASGIKPGGLLIYNGDEPLLPQVLAEPETVKPEGLELFTFGL 251
Query: 274 RRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSL 333
D ++ + G G + + + F +P G H +N AA AVA F V
Sbjct: 252 --AADNDDYPTEITSDGEG-SLFITAQSGQEAFRLPLLGQHNVVNGLAALAVARHFNVDA 308
Query: 334 AQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVIL 393
+ LS+ MR E++ G+ ++NDAYNA+P S +AAI L G+++ +L
Sbjct: 309 DHIRKGLSSLKLTGMRIEVVKCSDGLTVLNDAYNASPASMKAAIQTLSAYKTGGRKIAVL 368
Query: 394 GDMLELGSTERESHEKILSYCCDACIDLI 422
GDMLELG+ E++ HE+I + I+ +
Sbjct: 369 GDMLELGAEEKQFHEEIGRFAAKHNIEAL 397
>gi|365840196|ref|ZP_09381397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaeroglobus geminatus F0357]
gi|364562251|gb|EHM40119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaeroglobus geminatus F0357]
Length = 457
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 214/410 (52%), Gaps = 23/410 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++T E+ + +IL+ G + + TDTR + ++ F A+ G+ FD H+FI
Sbjct: 3 MFTDAEVVLATGARILQQGRRDMLYRNVTTDTRTVG--EDDLFAALKGEKFDGHDFIEQA 60
Query: 82 LYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
+ G GVI + G FV NT + ++A + R RFS +V V
Sbjct: 61 V-SDGAAGVIVEDAARLYPDGDYTIFVVK------NTRKAYQDLALFHRR-RFSIPVVAV 112
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK++T+++IA LE NV Q+ N+NN +G+ +L+ + + V+E+GM G
Sbjct: 113 TGSAGKTSTRALIATVLEQ-KYNVLQTEKNFNNEIGLPRTLLQLTKEHGACVVELGMRGL 171
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
G+I EL +A P + VV NVG SH+E LGS +A+AKGE+ + VLN DD V
Sbjct: 172 GQIKELVDIAEPTVGVVTNVGKSHIELLGSQAQIAKAKGELVEALGSDGTAVLNQDDKRV 231
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
A + + V FG D ++A + N G+ +++ + G H
Sbjct: 232 AAMAGKCKGKVVGFGIIN--DAPVMAGTIKNSEKGLSFTCRCFDQVIDVHMAVIGTHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
NA AA AV L G+S Q+ L+ + V MR E LV+ + VNDAYNANP S + A+
Sbjct: 290 NALAAVAVGRLLGLSEHQMQKGLAEYKGVPMRQE-LVNIDNVVFVNDAYNANPASMKEAV 348
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
D L + G+++ +LG MLELG + HEKI +Y D +D++ +GD
Sbjct: 349 DTLVTL-TGGRKIAVLGGMLELGDWAEKEHEKIGTYLADKKVDILIALGD 397
>gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
protein [Bacillus megaterium DSM 319]
gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
protein [Bacillus megaterium DSM 319]
Length = 460
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/401 (31%), Positives = 206/401 (51%), Gaps = 19/401 (4%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++A + G + G + DTR + + + I G+ F+ H F+ +
Sbjct: 5 TLTQLATMIPGSVFHSGNEATVIEGVSIDTRTI--QQGNLYIPIKGERFNGHAFVHKAIE 62
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G + + N+ N D + V+ +TL +L +A R+ +VG+TGS
Sbjct: 63 N-GALATLWNKDEENPPTDISVILVD-----DTLEALQQLAKSYRH-ELDIKVVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+T K M+ L++ V ++ GN+NN +G+ L+++ +D DIAVLEMGMS +GEI
Sbjct: 116 GKTTAKDMVKAVLDTT-YRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A P++ ++ N+G+SHL+ LGS + +A AK EI V N D+PL+ +
Sbjct: 175 FLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEPLLTSRV 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
V V FG D L + ++ LG + +E F IP G H NA +
Sbjct: 235 VNPVFETVTFGSSEQND--LYPSAISAEELGTTFTVSRET-TYPFFIPVLGKHNVHNALS 291
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A AV FG+ + L MR EL+ G+ +NDAYNA+P S +AAI L+
Sbjct: 292 AIAVGHYFGLDNETIAKGLKELKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMH 351
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
D+ +++++LGDMLELG E+E H+++ + ID +
Sbjct: 352 DLEGYKQKILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYV 392
>gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 466
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 140/407 (34%), Positives = 207/407 (50%), Gaps = 33/407 (8%)
Query: 29 INEIAESVNGKILKWGPPGIIC----TDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ EIA G+I + G GI+ TD+R + K F + G+ FD H+F S
Sbjct: 6 LAEIAAMCGGQIREAGDAGIVVQGVVTDSRQI--TKGCLFVPLAGERFDGHDFAS----- 58
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSGVLVGVTGSVG 142
C+ KG V ++L+ + A++ + +VG+TGS G
Sbjct: 59 -DCLQAGAGACLWALSKG---TPPGPAVLVDDTLIALQALAKSYLTETGAKVVGITGSNG 114
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK ++ AL S V ++ GN+NN +G+ L+++ + +IAVLEMGMSG+GEI
Sbjct: 115 KTTTKDLV-YALLSTTYKVHKTKGNFNNHIGLPLTILAMPEDTEIAVLEMGMSGRGEIEL 173
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L+++ PE VV N+G+SHL LGS E++ARAK EI K G + + N D+PL+ +
Sbjct: 174 LSKIGEPETAVVTNIGESHLLQLGSREEIARAKLEILAGMKPGGLFIYNGDEPLIPKVLA 233
Query: 263 ------PRGVRKVFFGWRRGCDVRLVAAQVANGGLGV--QVVLEKE-REMVKFVIPSPGL 313
P G++ FG R D Q G L Q + E +P G
Sbjct: 234 EPSTVKPEGLQTATFGLRPEND------QYPTGILFTDHQTLFTPHGSEGDPLELPLLGE 287
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H NA AA VA +GV A + S MR E++ RSGI I+NDAYNA+P S
Sbjct: 288 HNVSNALAAITVARHYGVGEAAIREGFSKVELTGMRIEVITGRSGITILNDAYNASPTSM 347
Query: 374 RAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
+AA+ +L+ + K++ +LGDMLELG +E + H +I +D
Sbjct: 348 KAALGVLEHMKGYRKKIAVLGDMLELGDSEADYHREIGEMLTPGTVD 394
>gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter
uraniireducens Rf4]
gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Geobacter uraniireducens Rf4]
Length = 468
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 152/417 (36%), Positives = 224/417 (53%), Gaps = 37/417 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++TI+EI E+ G + G + + TD+R +A + F A+ G+ FD H+++ +
Sbjct: 1 MFTIDEIIEATGGTRIGSGNDAVSGVSTDSRQVA--AGELFVALKGERFDGHDYLEAAV- 57
Query: 84 GKGCVGVI-------GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
+G + G Q N D +V V +TL +L ++A + R SRF LVG
Sbjct: 58 ARGVRAFLVAADRLAGKQPPN--DVIYVAVP-----DTLRALGDLAAWHR-SRFDLPLVG 109
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
+TGS GK+TTK M+A L G ++ GN NN +G+ L L+ + + AVLEMGMS
Sbjct: 110 ITGSNGKTTTKEMLATILAQTGPG-LKTSGNLNNLIGLPLMLLRLTKRDRWAVLEMGMSE 168
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
GEI LA MA P I V+ N +HLES+GS+E VA+AKGE+F K V NADDPL
Sbjct: 169 PGEIDRLAEMANPRIGVITNAFTAHLESMGSVEAVAKAKGELFMRLKTDGWAVYNADDPL 228
Query: 257 VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL------GVQVVLEKEREMVKFVIPS 310
++ P GV+++ FG R A+V++ G+ G++ L V + +
Sbjct: 229 ISRCPAPAGVKRLSFGLR--------GAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKA 280
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
GLH NA AAAA A L GV + L F+P R L R G+ +V+D+YNANP
Sbjct: 281 YGLHNVYNALAAAAAAHLLGVDPELIRSGLEEFTPYDKRFSLEEIR-GVVLVDDSYNANP 339
Query: 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S AA+ L+DI + + ILGDMLELG+ +H ++ C++ + +G+
Sbjct: 340 ASMAAALVTLRDIREESRAIAILGDMLELGTGSVAAHREV-GLLAATCVERLYAMGE 395
>gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
Length = 459
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 209/380 (55%), Gaps = 16/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + K+ F I G D H FI P++ KG + + V N ++ V+
Sbjct: 31 VAIDSRKI--EKDWLFIPIKGARVDGHSFI-PQVMEKGALCTLSEVVLENVSHPYILVD- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +L ++A + R + +VG+TGSVGK++TK MIA LE +V ++ GN+
Sbjct: 87 ----SCEQALKDIAEHYRKA-LDIKVVGITGSVGKTSTKEMIASVLEQ-KYHVLKTAGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ I +IAVLEMG++ GE+ LA+MARP+I V+ N+G HLE+L
Sbjct: 141 NNEIGLPLTIFNIRDEHEIAVLEMGINHFGEMHRLAKMARPDICVITNIGLCHLENLIDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ + +AK E+F + +LN DD + +T +G +FFG D A +
Sbjct: 201 DGILKAKTEMFDFMQPDAKIILNGDDDKLITVTDVKGQTPMFFGLSTELDA--FADNIHT 258
Query: 289 GGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
L GV L + +IP PG H+ NA A A V G++ ++ + + +PV
Sbjct: 259 HSLKGVSCTLHLGDNCIDTMIPIPGNHMVYNALAGALVGRELGLTAEEIKKGIESLTPVS 318
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R+ ++++ S + I++D YNANP+ST+A+ID+L ++V ILGDM ELG E+E H
Sbjct: 319 GRNNMILTDS-LLIIDDCYNANPVSTKASIDVLS--GAETRKVAILGDMFELGEDEKELH 375
Query: 408 EKILSYCCDACIDLIGLVGD 427
++ + + IDL+ +G+
Sbjct: 376 RQVGVHASEKGIDLVICIGE 395
>gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Paenibacillus polymyxa E681]
gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Paenibacillus polymyxa E681]
Length = 467
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 207/389 (53%), Gaps = 35/389 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----- 103
+ TD+R P F + G+ FD H ++ + + W K
Sbjct: 29 VFTDSR--RPQSQGLFVPLVGERFDGHNYVQQIVSEASAAAFL-------WQKNHGAPPS 79
Query: 104 ---VQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
++VE +TL +L ++A Y R + S +VG+TGS GK+TTK ++ AL
Sbjct: 80 ENAIEVE-----DTLEALQHLAAAYLRETGVS--VVGITGSNGKTTTKDIVN-ALLGTTF 131
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V ++ GN+NN +G+ L+++ + + DI +LEMGMSG+GEI LA +A+P++ ++ N+G+
Sbjct: 132 KVHKTEGNYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIRLLANIAQPDVAIITNIGE 191
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGW 273
SHL LGS ++ARAK EI K G + + N D+PL++ + P G++ FG
Sbjct: 192 SHLLQLGSRAEIARAKLEITSGLKPGGLLIYNGDEPLLSQVLAESETVKPEGLKLFTFGL 251
Query: 274 RRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSL 333
G D ++ + G G + + + F +P G H +N AA AVA F V
Sbjct: 252 ATGNDD--YPTEITSDGEG-SLFITAQSGKEAFRLPLLGQHNVVNGLAALAVARHFNVDA 308
Query: 334 AQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVIL 393
+ LS+ MR E++ +G+ ++NDAYNA+P S +AAI L +G++V +L
Sbjct: 309 DHIRKGLSSLKLTGMRIEVVNCPNGLTVLNDAYNASPASMKAAIQTLSAYKTDGRKVAVL 368
Query: 394 GDMLELGSTERESHEKILSYCCDACIDLI 422
GDMLELG E++ HE+I + ++++
Sbjct: 369 GDMLELGPEEKQFHEEIGIFAAKHDVEVL 397
>gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
29799]
gi|150270953|gb|EDM98227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 463
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 226/413 (54%), Gaps = 24/413 (5%)
Query: 24 SPIWTINEIAESVNGKIL-KWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
PI TI +I +V G+IL + + + TD+R + ++ F + G+ FD H +I
Sbjct: 2 EPI-TIRDILTAVKGRILGDFDNLDLEISRVETDSRTI--HEGSLFVPLIGEQFDGHAYI 58
Query: 79 SPELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
+ L G G + ++ G +++V+ +T +L ++A + + +F +V
Sbjct: 59 TSALEG-GAAACFTQRDRESYLPGKCYIRVD-----HTQRALRDLAVWYKK-KFDIPVVA 111
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+TTK M+A L V ++ GN N +G +L +D++ IAVLEMGM+
Sbjct: 112 VTGSVGKTTTKDMVAAVLGE-HYKVLKTEGNLNTDIGTCRTLFRLDKSYQIAVLEMGMNH 170
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
GEI ++ +A+P++ ++ N+GDSH+E LGS E++ +AK EIF +K G + VLN DDPL
Sbjct: 171 PGEIEVMSAIAQPDVCLITNIGDSHIEHLGSRENILKAKCEIFSHAKPGCLAVLNGDDPL 230
Query: 257 VANL--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
+ L +P + ++ G G D V++G V ++ + IP+ G H
Sbjct: 231 LRTLEGKLPEPI--LWCGGAPGLDYT-ADHLVSDGTSNVCCEVKTPHTSCQVEIPALGSH 287
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
+ AAAVA FGV+ + + +F+P +MR ++ I I+ND YNANP S R
Sbjct: 288 MIYPTLMAAAVAEHFGVTAEEFRRGVLHFAPTKMRMNIIQRGEDITILNDTYNANPQSMR 347
Query: 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AA+++L +G+++ +LGDM ELG+ H I +Y A ID + VG+
Sbjct: 348 AAVEVLSKTH-SGRKIAVLGDMFELGTLAPALHAGIGTYLGKAGIDCLVAVGE 399
>gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus curdlanolyticus YK9]
gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus curdlanolyticus YK9]
Length = 465
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 206/391 (52%), Gaps = 31/391 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISP--------ELYGKGCVGVIGNQVCNNWD 100
I D+R + P Q + + G++FD HEF + L+ +GC + +++ +
Sbjct: 20 ITKDSRAVEPG--QLYVPLIGENFDGHEFAAQSLAAGAAGSLWEEGCP--VPDELA---E 72
Query: 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN 160
V V +TL++L +A R + +VG+TGS GK+TTK + A L ++
Sbjct: 73 APLVLVP-----DTLSALQRLASAYRE-ELNVRIVGITGSNGKTTTKDLTAAVLGTI-YR 125
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
V ++ GN NN +GV L+++ +D ++ AVLEMGMS GEI L+ +A P+ ++ NVGD+
Sbjct: 126 VHKTAGNLNNHIGVPLTILQLDETIETAVLEMGMSDFGEIELLSTIASPDAAIITNVGDA 185
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV----ANLTVPRGVRKVFFGWRRG 276
H+ LGS +A AK EI G V N D+PL+ A + +P G V FG
Sbjct: 186 HMLQLGSRAGIAEAKLEIVAGLLPGGALVFNGDEPLLRERLAQIELPEGTELVPFGAAAD 245
Query: 277 CDVRLVAAQVANGGLGVQVV-----LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGV 331
C Q+ + VV E+ ++ +P PG H +NA AA AVA FGV
Sbjct: 246 CQWSASNVQIGSDASAFDVVSPLLSAEEAEQLRGITLPVPGAHNVMNALAAIAVAYRFGV 305
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
AQ+ L+ + MR + + + +G KI+NDAYNANP + RAA+DL+ ++ ++ V
Sbjct: 306 PAAQIRDGLATVTMTGMRIQPVDAFNGAKILNDAYNANPTAVRAAVDLVAELTGYRRKWV 365
Query: 392 ILGDMLELGSTERESHEKILSYCCDACIDLI 422
+L DMLELG E + H I +Y D +
Sbjct: 366 VLADMLELGPEEADLHRGIGAYVTPEKADAV 396
>gi|386757059|ref|YP_006230275.1| hypothetical protein MY9_0480 [Bacillus sp. JS]
gi|384930341|gb|AFI27019.1| hypothetical protein MY9_0480 [Bacillus sp. JS]
Length = 481
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 209/407 (51%), Gaps = 27/407 (6%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE VNG + K+ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 29 TVKNIAEMVNGTLTNPKYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHTFVE-QAF 85
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 86 EAGVAAVL-------WDRSEPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 137
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 138 SNGKTTTKDMIHAVLGTR-YRVHKTGGNFNNHIGMPLTVLAMPENTEIAVLEMGMSAKGE 196
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 197 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 256
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
R +G D +L V+ G ++ F IP G H +NA
Sbjct: 257 ---AYSCRTKTYGMGAHNDYQL--QDVSQSEEGTHFTIKGME--TSFFIPILGKHNVMNA 309
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A FG++ LS MR EL+ + SG+ I+NDAYNA+P S +AAI L
Sbjct: 310 MAAIAAGAYFGITPEDAATGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQL 369
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ + GK++++LGDMLELG E H++ + ID + G
Sbjct: 370 TESLEGYGKKMLVLGDMLELGDLEETFHQECGAVISPEKIDRVFTYG 416
>gi|423393317|ref|ZP_17370543.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1X1-3]
gi|401630236|gb|EJS48043.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1X1-3]
Length = 458
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 210/410 (51%), Gaps = 27/410 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+
Sbjct: 5 TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDK--- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
V V W KG N V +TL++L +A R+ + +VGVTG
Sbjct: 60 -----AVESGAVATLWMKGVANPPENLPVIFVEDTLSALQMLAKNYRD-QLDVKVVGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GE
Sbjct: 114 SNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 173 IEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN 232
Query: 260 LTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
VP V FG R D + G ++ +E E + F IP G H
Sbjct: 233 -RVPEMDLAAETVTFGDARANDYYPTTVTLQATGTHFKMNIE---ENISFYIPVLGKHNV 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 289 YNTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 349 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coprococcus catus GD/7]
Length = 456
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 207/381 (54%), Gaps = 20/381 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG-FVQVE 107
+ D+R + P F A G+ D H FI P+++ KG + VI +V D G + VE
Sbjct: 32 VVIDSRQIEPG--YIFVATKGERVDGHRFI-PDVFAKGALAVIC-EVLPEEDLGPCILVE 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
++ +L A + R + + +VG+TGSVGK++TK IA L V ++ GN
Sbjct: 88 -----DSFMALKQAAAFYR-QQLNIRVVGITGSVGKTSTKEFIAAVLVE-KYKVHKTAGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN VG+ L++ GI IAVLEMG++ GE+ L+ +ARP+I V+ N+G HLE+L
Sbjct: 141 YNNEVGLPLTIFGIQDDDQIAVLEMGINTFGEMHRLSEVARPDICVMTNIGQCHLENLID 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+ + RAK EIF ++N DD +A + G + FG + D + A +
Sbjct: 201 RDGILRAKSEIFDFMNPEGTVIVNGDDDKLATIHDVYGKAPITFGMNK--DNAIWADHIE 258
Query: 288 NGG-LGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
N G LG + + +V IP PG H+ NA AAAAV F ++ ++ +S+ V
Sbjct: 259 NRGLLGSRADIHMGDVLVHANIPLPGEHMIYNAMAAAAVGVQFDMTKEEITAGISHVEAV 318
Query: 347 QMRSELLVSRSGIKIV-NDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
RS L+ +G K+V +D YNANP+S +AAIDLL G++V ILGDM ELG ER
Sbjct: 319 AGRSHLI--EAGDKVVIDDCYNANPVSMKAAIDLLA--TAPGRKVAILGDMFELGENERA 374
Query: 406 SHEKILSYCCDACIDLIGLVG 426
H ++ Y + IDLI VG
Sbjct: 375 MHREVGQYAAEKGIDLILCVG 395
>gi|402815851|ref|ZP_10865443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Paenibacillus alvei DSM 29]
gi|402506891|gb|EJW17414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Paenibacillus alvei DSM 29]
Length = 468
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 130/381 (34%), Positives = 205/381 (53%), Gaps = 17/381 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I T++R + + F + G+ FD H + L G + ++ +G+ +
Sbjct: 30 ISTNSRKI--ESSVLFVPLQGERFDGHLYADQALK-DGAAAAMWESNHDDAPQGYPLIMV 86
Query: 109 NGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ NTL +L +A Y + +V +TGS GK+TTK MIA L V ++ GN
Sbjct: 87 D---NTLEALQRLAQAYLAQQQVK--VVAITGSNGKTTTKDMIASVLAER-YRVHKTDGN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ L+++ + + +IAVLEMGMSG+GEI L+ +A+P+ V+ N+G++HL LGS
Sbjct: 141 FNNHIGLPLTILSMPKDTEIAVLEMGMSGRGEIELLSSIAQPDAAVITNIGEAHLLQLGS 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLV------ANLTVPRGVRKVFFGWRRGCDVRL 281
E++ARAK EI + V + + D+PLV P+ + + FG CDVR
Sbjct: 201 REEIARAKLEIISGLRENGVLICHGDEPLVDMALSEEATKRPKNMSVIRFGAGMQCDVRP 260
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
+ G V ++ + +P G H INA AA A+ LFG++ Q+ L
Sbjct: 261 EHIDLHEAGTTFTVAASDSQKAMAVELPLLGKHNVINALAAVAIGRLFGLTDEQIAQGLG 320
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
N MR E ++ G ++NDAYNA+P +T+AA+D+L ++ GKR+ ILGDMLELG
Sbjct: 321 NAQISGMRFERTITPGGWVLLNDAYNASPTATKAALDVLAEL-HGGKRIAILGDMLELGP 379
Query: 402 TERESHEKILSYCCDACIDLI 422
E E H ++ + +DL+
Sbjct: 380 DEAELHYEVGTSIQPGSLDLL 400
>gi|403069280|ref|ZP_10910612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oceanobacillus sp. Ndiop]
Length = 454
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 216/405 (53%), Gaps = 25/405 (6%)
Query: 29 INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGC 87
++++ GK+ + TD+R + N F I G +FD H+F + + G G
Sbjct: 8 LSKVFPDFKGKLAPEAEIDEVTTDSRNVG--GNSLFIPIVGDNFDGHDFANQAIEAGAGA 65
Query: 88 V-----GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ I N+V ++ V+ +TL +L +A + RN + +++G+TGS G
Sbjct: 66 MLWDKNKEIPNEVPEDYPLFLVE-------DTLKALQRLAAHYRND-INPIVIGITGSNG 117
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK + A A+ + GN+NN +G+ L+++ + R ++ +LEMGMS GEI
Sbjct: 118 KTTTKDLTA-AVTQTSYRTHYTNGNFNNHIGLPLTILSMKRDTEVLILEMGMSNFGEIEL 176
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L ++ARP+ ++ N+G+SH+E LGS E +A+AK EI + K V +++ D+PL+ NL +
Sbjct: 177 LTKLARPDYAIITNIGESHIEFLGSREGIAKAKLEIVKGLKENGVLIVDGDEPLLQNLQL 236
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
+ R + G+ D L + G Q+ + ++ IP G H A NA A
Sbjct: 237 SQ--RVISNGFTAENDNVLTNISIVAGETAFQL-----SDGFRYKIPLLGKHHAKNASFA 289
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
+ L + + + S MR EL+ ++G+ I+NDAYNA+P S +AAI+++K
Sbjct: 290 ITIGKLLNIDAEKCSQAFDTLSRTAMRFELIKGKNGVTIINDAYNASPTSMKAAIEVVKQ 349
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ ++V+ILGD+LELGS E H I +Y ++ I + G+
Sbjct: 350 MDGFEQKVLILGDILELGSHSEELHRSI-AYAIESPITAVYTYGE 393
>gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
10507]
gi|225037123|gb|EEG47369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
hydrogenotrophica DSM 10507]
Length = 458
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 133/401 (33%), Positives = 215/401 (53%), Gaps = 21/401 (5%)
Query: 28 TINEIAESVNG-----KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ IA NG + +W I +D+R AP F I G+ D H FI P +
Sbjct: 5 TLENIANVCNGIYRGDEKSRWTEVTAITSDSRQAAPG--CLFVPIVGERVDGHSFI-PNV 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G + + + ++QV ++L ++ ++A + + +VG+TGSVG
Sbjct: 62 MEAGALATLSQKELPEARFPYIQV-----ASSLQAVKDIAKFYL-EQLKIPVVGITGSVG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK +IA L+ ++ ++ GN+NN +G+ L++ + +IAVLEMG+S GE+
Sbjct: 116 KTSTKEVIASVLKE-KYHILKTQGNFNNELGLPLTVFRLRDYHEIAVLEMGISDFGEMSR 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +ARP+ V+ N+G HLE LG + V +AK E+F+ K G +LN DD +A +
Sbjct: 175 LADIARPDTCVITNIGQCHLEFLGDRDGVLKAKTEVFRYLKEGGRAILNGDDDKLATIRQ 234
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+G +FFG V A Q+ + GL G+ + IP PG H+ NA A
Sbjct: 235 VQGKEPIFFGMNPAFPV--YADQIQSRGLKGMSCRIHLPEAEFAVEIPMPGQHMVYNALA 292
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
AAAV + G++ Q+ + + P+ R ++ + + IV+D YNANP+S +A++D+LK
Sbjct: 293 AAAVGMVHGLTPEQIRRGIESLEPISGRFRMIETDHFL-IVDDCYNANPVSMKASLDVLK 351
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
D G++V ILGDM ELG E+E H ++ + +DL+
Sbjct: 352 DAL--GRKVAILGDMGELGEQEKELHAEVGDHAGRCGLDLL 390
>gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
protein [Bacillus megaterium QM B1551]
gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
protein [Bacillus megaterium QM B1551]
Length = 460
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 128/401 (31%), Positives = 206/401 (51%), Gaps = 19/401 (4%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++A + G + G + DTR + + + I G+ F+ H F+ +
Sbjct: 5 TLKQLATMIPGSVFHSGNEAAVIEGVSIDTRTI--QQGNLYIPIKGERFNGHTFVHKAIE 62
Query: 84 GKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V + N+ N D + V+ +TL +L +A R+ +VG+TGS
Sbjct: 63 N-GAVATLWNKDEENPPTDISVILVD-----DTLVALQQLAKSYRH-ELDIKVVGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+T K M+ L++ V ++ GN+NN +G+ L+++ +D DIAVLEMGMS +GEI
Sbjct: 116 GKTTAKDMVKAVLDTT-YRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A P++ ++ N+G+SHL+ LGS + +A AK EI V N D+PL+ +
Sbjct: 175 FLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEPLLTSRV 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
V + FG D L + ++ LG + +E F IP G H NA +
Sbjct: 235 VNPVFETMTFGSSEQND--LYPSAISAEELGTTFTVSRET-TYSFFIPVLGKHNVHNALS 291
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A AV FG+ + L MR EL+ G+ +NDAYNA+P S +AAI L+
Sbjct: 292 AIAVGHYFGLDNETIAKGLKELKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMH 351
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
D+ +++++LGDMLELG E+E H+++ + ID +
Sbjct: 352 DLEGYKQKILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYV 392
>gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter ethanolicus JW 200]
gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter ethanolicus JW 200]
Length = 461
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 220/407 (54%), Gaps = 23/407 (5%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 6 IDEIVRATEGKLIKGSLKDKVIGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAI-DK 62
Query: 86 GCVGVIGNQVCN-----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G + VI ++ N ++ + V TL +L +A Y R +F+ + VTGS
Sbjct: 63 GAIAVITARLENVECLKDFSVDVIYVN-----ETLEALHKIASYYR-KKFNIPFIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGMSG GEI
Sbjct: 117 SGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A P++ V N+G +H+E LGS E++ +AK E+ + K +V VLNADD +++ +
Sbjct: 176 RRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKI 235
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ + +G + G + A + G ++ L+ + + + PG+H N+
Sbjct: 236 PLQYSSKYYRYGIKSG---EIKACDIEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSL 292
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA V FG+++ + +L +F P + R ++ I + YNANP S +AA+ +L
Sbjct: 293 AAICVGLEFGINVEDMAEALKDFQPGKRRLNIIEIGDIKIIDD-VYNANPDSMKAALSVL 351
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+D+ +++ +LGDMLELG E+H++I D+ ID++ GD
Sbjct: 352 RDLPAK-RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGD 397
>gi|335039976|ref|ZP_08533116.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldalkalibacillus thermarum TA2.A1]
gi|334180092|gb|EGL82717.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldalkalibacillus thermarum TA2.A1]
Length = 450
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 140/407 (34%), Positives = 215/407 (52%), Gaps = 13/407 (3%)
Query: 26 IWTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ T+ ++ E ++L+ I+ D+R L + F A+TG D H+FI +
Sbjct: 1 MLTVKDVVELSGSQLLQGDLEAIVEFVHFDSRQL--EDHALFVALTGGARDGHQFIDDAI 58
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KG V+ +Q + V N +T ++ +A R R S +V VTGS G
Sbjct: 59 -QKGATSVLISQDDPKLRQTHQGVNFIFNEDTRSAFQALAAGYRR-RLSLPVVAVTGSNG 116
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK MIA L S NV+++Y N+NN +GV LSL+ I + +IAVLE+GM+ GEI
Sbjct: 117 KTTTKDMIAHLL-SAKFNVYKTYKNFNNDLGVPLSLLHIKKHHEIAVLELGMNRAGEIDF 175
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LARM RP I V+ NVGD+H+E G E +A AKGE+ + +LN DDPLV +
Sbjct: 176 LARMTRPNISVITNVGDAHIEFFGLREKIAEAKGELLPHTDPDGFVILNGDDPLVLS-QA 234
Query: 263 PRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
PR KV+ + ++ D+ A + G L + + V +P G H N
Sbjct: 235 PRYSGKVYTYSIKKEADI--YATNITYSEHGSFFDLHVDGQSVSCFMPMFGEHNISNLLP 292
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
AA +A G++L + ++ + S MR + + +G ++NDAYNA+P S + AID +
Sbjct: 293 AAFIAYRSGINLETLQQTMMSISVSDMRFQTMDGPNGSILINDAYNASPTSMKVAIDTFE 352
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
I N K+VV+LGD+ ELG + H ++ Y + + +I VG++
Sbjct: 353 HIYPNRKKVVVLGDIFELGDQSDKLHTEVGEYIKNKPLTVI-TVGEK 398
>gi|443633954|ref|ZP_21118130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443346150|gb|ELS60211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 471
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 211/408 (51%), Gaps = 29/408 (7%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+HF+ H F+ P+ +
Sbjct: 19 TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKL--EQHQLFIPLKGEHFNGHTFV-PQAF 75
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL++L +A A ++GVTG
Sbjct: 76 DAGVAAVL-------WDRSEPNPPENQAVILVDDTLSALQQLAK-AYLQELGTRVIGVTG 127
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 128 SNGKTTTKDMIHAVLGTR-YRVHKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGE 186
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL
Sbjct: 187 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPL--- 243
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVV-LEKEREMVKFVIPSPGLHLAIN 318
L + +G D +L + G + +EK F IP G H +N
Sbjct: 244 LQKAYSCQTKTYGTGAQNDYQLQDVSQSEAGTHFTIKGMEK-----TFFIPILGKHNVMN 298
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA A FG++ LS MR EL+ + SGI I+NDAYNA+P S +AAI
Sbjct: 299 AMAAIAAGAYFGITTEDAAKGLSGLKVTGMRLELIKTDSGISIINDAYNASPTSMKAAIQ 358
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L + + GK++++LGDMLELG E H++ + ID + G
Sbjct: 359 LTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPEKIDRVFTYG 406
>gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera micronuciformis F0359]
gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera micronuciformis F0359]
Length = 457
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 214/410 (52%), Gaps = 23/410 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++T EI + +IL+ G I I TDTR + ++ F A+ G+ FD H+FI
Sbjct: 3 MFTDGEIVLATGARILQQGRKNIRYSSIETDTRTIG--EDAVFVALRGEKFDGHDFIEQA 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGV 137
+ G VI + D G + +G+ + NTL + ++A Y R RF+ +V V
Sbjct: 61 V-SLGTTAVIVD------DAGRLYPDGDYTIFVVKNTLKAYQDLALYHRR-RFAIPVVAV 112
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK++T+S+IA L S NV Q+ N+NN +G+ +L+ + V+EMGM G
Sbjct: 113 TGSVGKTSTRSLIATVL-SQKYNVLQTEKNFNNEIGLPRTLLQLTGEHGACVVEMGMRGL 171
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
G+I ELA +A P I VV NVG SH+E LGS ++A+AKGE+ + VLN DD V
Sbjct: 172 GQIKELADIAEPTIGVVTNVGKSHIELLGSQANIAKAKGELVEALGTDGTAVLNGDDKRV 231
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
A + + V FG + V +A + G+ +++ + G H
Sbjct: 232 AAMAEKCKGKTVSFGIKENAPV--MAGAIKTDEKGISFTCRCFDQVMDVHMSVLGRHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
NA AA AV L G+S Q+ L+ + V MR E L+ + +NDAYNANP S A+
Sbjct: 290 NALAAVAVGRLLGMSEHQMQKGLAEYKGVPMRQE-LIHLEDLTFINDAYNANPASMAEAV 348
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
L +A +G+++ +LG MLELG + HEKI + D + +GD
Sbjct: 349 HTLMSVA-SGRKIAVLGGMLELGDWTKAEHEKIGALLAAEKADALIALGD 397
>gi|429765545|ref|ZP_19297830.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium celatum DSM 1785]
gi|429185996|gb|EKY26959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium celatum DSM 1785]
Length = 462
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 137/420 (32%), Positives = 231/420 (55%), Gaps = 44/420 (10%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI +++ GK++ + C D R + K+ F AI G+ F+A+ L
Sbjct: 11 MSFEEIVKALEGKVIVDNHYKNFNKFCIDNRKIE--KDNIFLAIKGEKFNANNVAIKALE 68
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ ++V N+D + EG G + NT+ +L+ +A Y RN + + +VGVTG
Sbjct: 69 DGASIAIV-DEV--NFD--LNEAEGKGIIIKVDNTIKALLRLATYYRN-KLNVKVVGVTG 122
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK +IA AL S VF++ GN+N+ +G+ L ++ + +D+AVLEMGMS GE
Sbjct: 123 STGKTSTKDLIA-ALLSSKYKVFKTKGNFNSEIGLPLMILELTSDIDVAVLEMGMSDLGE 181
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI---FQESKLGDVCVLNADDPL 256
I LAR+A P+I + N+G SH+E L + E++ +AK EI F E+ ++ V+NA+D +
Sbjct: 182 IEVLARVATPDIAAITNIGLSHMEHLKTQENILKAKMEITTCFNEN---NILVINAEDKM 238
Query: 257 VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVK--------FVI 308
+ N++ +G + G+ DV A+ + ++ E+E E + F +
Sbjct: 239 LKNIS-QKGYKLKKIGYNHEYDV--YASNI--------ILREEETEFLAHVGNKEAVFTL 287
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
G H +N A VA VSL ++ L N MR + L+ + G I+ND YNA
Sbjct: 288 KMAGKHNVLNTMIAIEVANNLNVSLEEMIKGLENLEATSMRLQ-LIKKDGFTIINDCYNA 346
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
+P S ++++D+L N +R+ ILGDM ELG+ ++H +I Y D +DL+ ++G++
Sbjct: 347 SPDSMKSSLDVLSAYK-NNRRIAILGDMYELGTEATKAHMEIGEYARDK-VDLLIVIGEQ 404
>gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1273]
gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1272]
gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1272]
gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1273]
Length = 458
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 209/410 (50%), Gaps = 27/410 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+
Sbjct: 5 TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDK--- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
V V W KG N V +TL++L +A R+ + +VGVTG
Sbjct: 60 -----AVESGAVATLWMKGVANPPENLPVIFVEDTLSALQMLAKNYRD-QLDVKVVGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GE
Sbjct: 114 SNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 173 IEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN 232
Query: 260 LTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
VP V FG R D V G + +E E + F IP G H
Sbjct: 233 -RVPEMNLAAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNV 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 289 YNTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 349 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|423462499|ref|ZP_17439293.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5X2-1]
gi|401131793|gb|EJQ39443.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5X2-1]
Length = 458
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 133/393 (33%), Positives = 208/393 (52%), Gaps = 25/393 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A RN + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRN-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP KV FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAEKVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG+ E + H ++
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEV 382
>gi|375309401|ref|ZP_09774682.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. Aloe-11]
gi|375078710|gb|EHS56937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. Aloe-11]
Length = 457
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 203/395 (51%), Gaps = 37/395 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----- 103
+ TD+R P F ++G+ FD H ++ + G + W K
Sbjct: 19 VFTDSR--KPQSQGLFVPLSGERFDGHNYVQQIMSEAGAAAFL-------WQKDHGAPPA 69
Query: 104 ---VQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
++VE +TL +L +A Y R + S +VG+TGS GK+TTK ++ AL
Sbjct: 70 GNAIEVE-----DTLEALQQLAAAYLRETGVS--IVGITGSNGKTTTKDIVT-ALLGTTF 121
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V ++ GN+NN +G+ L+++ + + DI +LEMGMSG+GEI L +A+P++ V+ N+G+
Sbjct: 122 KVHKTEGNYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIGLLTNIAKPDVAVITNIGE 181
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGW 273
SHL LGS ++ARAK EI K G + + N D+PL+ + P G++ FG
Sbjct: 182 SHLLQLGSRAEIARAKLEIASGLKPGGLLIYNGDEPLLPQVLAEPATVKPEGLKWFTFGI 241
Query: 274 RRGCDVRLVA-AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVS 332
+ D A G L KE F +P G H +N AA AVA F V
Sbjct: 242 SKNNDDYPTAITSDEQGSLFTTAQSGKE----AFRLPLLGQHNIVNGLAALAVARHFNVD 297
Query: 333 LAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVI 392
+ LS+ MR E++ G+ ++NDAYNA+P S +AA+ L +G+++ +
Sbjct: 298 ADHIRKGLSSLKLTGMRIEVVSCSDGLTVLNDAYNASPASMKAALQTLSGYKTDGRKIAV 357
Query: 393 LGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
LGDMLELG E++ HE+I + ++ + G+
Sbjct: 358 LGDMLELGPEEKQFHEEIGLFAAKHDVEELFTYGE 392
>gi|352684904|ref|YP_004896889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Acidaminococcus intestini
RyC-MR95]
gi|350279559|gb|AEQ22749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Acidaminococcus intestini
RyC-MR95]
Length = 459
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 200/368 (54%), Gaps = 21/368 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F A+ G+ FD H++++ L KG + + + + V
Sbjct: 26 VSTDSRSIGPG--TLFVALRGEKFDGHDYVAAALE-KGATAALVDHNPGVAPQKCILVP- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + +A R S+ + ++ +TGS GK++TK M A L + NV ++ N+
Sbjct: 82 ----DTLKAYQEIASAYRLSKKNLKVIAITGSNGKTSTKDMTAAVLAAR-YNVVKTQANF 136
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ ++L+ I ++AV+EMGM G G+I E+ ++A P+ ++ NVG++HLE LGSL
Sbjct: 137 NNEIGLPMTLLRIKDNTEVAVVEMGMRGLGQIREMKQIAYPDAAIITNVGETHLELLGSL 196
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++A+AK EI ++ + VLNADDP V+ + VR +G CDVR A +
Sbjct: 197 ENIAKAKSEILEDFTKDNWAVLNADDPRVSVMRTGASVRT--YGIDHDCDVR--ARDITT 252
Query: 289 GGLGVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
GL E + K +P G H +NA A+ +A L+GV + SL N
Sbjct: 253 IGLVTCFTYESKITGAKQKVALPMLGRHNVMNALASITMAELYGVPDTAIAESLQNIKMT 312
Query: 347 QMRSELLVSRSGIK-IVNDAYNANPISTRAAIDLLKDIACN---GKRVVILGDMLELGST 402
R E L R G K I+NDAYNA+P S A + L+++ N G+ + +L DMLELGS
Sbjct: 313 GKRQEFL--RLGDKTIINDAYNASPASVAVAFETLQEVVKNQGYGREIAVLADMLELGSV 370
Query: 403 ERESHEKI 410
ESH K+
Sbjct: 371 SEESHRKV 378
>gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
coahuilensis m4-4]
Length = 456
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 193/371 (52%), Gaps = 18/371 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV-E 107
+ DTR L F G++ D H F+ ++ KG W+K E
Sbjct: 30 VIIDTRKLTAG--NLFVPFKGENVDGHTFVR-DVLEKGAGAAF-------WEKSAGPAPE 79
Query: 108 GNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
G + +SLV + ++ R + +VGVTGS GK+TTK ++ AL S V ++
Sbjct: 80 GLPVIVVEDSLVALQTLSKAYRNELNVKVVGVTGSNGKTTTKDIL-FALLSTKYRVHKTE 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ + ++AVLEMGMSG GEI EL ++A P+ ++ N+G+SHL+ L
Sbjct: 139 GNYNNHIGLPLTILSLPEDSEVAVLEMGMSGFGEIRELTQIALPDAAIITNIGESHLQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
GS E +++AK EI + K + V N D+PL+ G K FG R + +
Sbjct: 199 GSREGISKAKFEIVEGLKSEGLFVYNGDEPLLQERVKGYGGSKETFG--RHSSNTMYPTK 256
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
+A G G + E +F +P G H +N A +A FGV + LS
Sbjct: 257 LAPSGFGTTFSVNVSDE--EFHLPILGEHNVMNTMGAMLIAKFFGVGFGDMQKGLSTLKL 314
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
MR E+ G I+NDAYNA+P ST+AAIDLL+ I+ GKR ++ DMLELG E
Sbjct: 315 TGMRLEVSTGAKGETIINDAYNASPSSTKAAIDLLQTISTTGKRYFVVSDMLELGPNEEA 374
Query: 406 SHEKILSYCCD 416
H ++ +Y D
Sbjct: 375 FHHEVGTYVTD 385
>gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X514]
gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X514]
Length = 460
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 221/408 (54%), Gaps = 25/408 (6%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 5 IDEIVRATEGKLIKGNLKDKVMGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAI-DK 61
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVN------TLNSLVNMACYARNSRFSGVLVGVTG 139
G VI ++ N V+ + +VN TL +L +A Y R +F+ + VTG
Sbjct: 62 GASAVITARLDN------VECLKDFSVNVIYVNETLEALHKIASYYR-KKFNIPFIAVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGM+G GE
Sbjct: 115 SSGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L +A P++ V N+G +H+E LGS E++ +AK E+ + K +V VLNADD +++
Sbjct: 174 IRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSK 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ + + +G + G + A + ++ L+ + + + PG+H N+
Sbjct: 234 IPLQYSSKYYRYGIKSG---EIKACDIEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNS 290
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA V FG+++ + +L +F P +MR ++ I + YNANP S +AA+ +
Sbjct: 291 LAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDD-VYNANPDSMKAALSV 349
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
L+D+ +++ +LGDMLELG E+H++I D+ ID++ GD
Sbjct: 350 LRDLPAK-RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGD 396
>gi|342215281|ref|ZP_08707931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. oral taxon 780 str. F0422]
gi|341588667|gb|EGS32052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. oral taxon 780 str. F0422]
Length = 454
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 133/405 (32%), Positives = 205/405 (50%), Gaps = 20/405 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEF--ISPEL 82
+T+ E+ E+ G + TDTR + KN F A+ G FD H+F ++ E
Sbjct: 4 FTVQEVLEATQGFYAGTSTCSFADVSTDTRTIG--KNGLFVALEGMTFDGHDFLTVAKER 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G V G + +G V +E +TL + +A Y R RF ++G+TGS G
Sbjct: 62 GATGAVVKRGKTI-----EGLVCIEVE---DTLQAYQQLATYHRR-RFPIPIIGITGSSG 112
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK MI+ LE V ++ N+NN +GV L+ + D+ VLEMGM G G+I E
Sbjct: 113 KTTTKEMISAVLEK-AFTVLKTEKNYNNEIGVPKMLLQLTEDHDVCVLEMGMRGLGQIAE 171
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +A P I V+ NVG SH+E LGS E++ +AK E+ + VLN DD V +
Sbjct: 172 LAEIAEPTIGVITNVGTSHIELLGSQENIGKAKQELIEALPSTGAAVLNHDDSFVLPMEQ 231
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
+ + +G + G V+ Q+ G+ + K +P G+H +A +A
Sbjct: 232 VTDAKVMTYGMQEGSHVQ--GTQLEYTSKGINFTVRDTSGEWKVFLPMIGIHNVYDALSA 289
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AV T+ GV A++ + F + MR E +V+ ++NDAYNANP S +I +
Sbjct: 290 IAVGTILGVPKAEIVEAFKEFPGIPMRQE-IVAFPTFTVLNDAYNANPNSMAESIRAMSQ 348
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ +++ +LGDMLELG + +HE+I + D++ GD
Sbjct: 349 LQ-GARKIAMLGDMLELGDHSKLAHEEIGKLLGEEHYDMVFTFGD 392
>gi|342217815|ref|ZP_08710453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera sp. UPII 135-E]
gi|341592802|gb|EGS35662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera sp. UPII 135-E]
Length = 458
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 142/407 (34%), Positives = 219/407 (53%), Gaps = 18/407 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ E+ E+ ++L + + TDTR L + F A+TG F+ H+F+ E
Sbjct: 4 FTVQEVKEATKAQVLMAPKSRLEVFQHVDTDTRTL--TQQSLFVALTGDRFNGHDFV-LE 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG G++ ++ N + + +TL + +A + R RFS ++ VTGSV
Sbjct: 61 AVKKGATGIVVSE--NRPEYRSLDAIVFLVADTLQAYQQLAQFHRR-RFSIPVIAVTGSV 117
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++T+++IA L S NV Q+ N+NN +G+ +L+ +D+ ++ V+EMGM G G+I
Sbjct: 118 GKTSTRNIIASVL-SQKFNVCQTEKNFNNEIGLPKTLLQLDKTHEVCVVEMGMRGLGQIA 176
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA +A P + VV NVG SH+E LGS+E++ARAK E+ + + +LN DD VA ++
Sbjct: 177 ALASIAEPTVGVVTNVGKSHIELLGSIENIARAKAELVEALSAEGIAILNQDDSRVAAMS 236
Query: 262 -VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
V +G KV G+ C+ + A ++ GV + + + IP G H NA
Sbjct: 237 NVCKG--KV-IGYGVSCEAAVQAERIRVSEKGVSFMCRCFDQGFEVKIPVLGKHHVYNAL 293
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA A L G+S Q+ LS + V MR E L+ +NDAYNANP S AAI L
Sbjct: 294 AAIATGRLLGLSENQMIRGLSEYKGVPMREE-LIHIGSYTFINDAYNANPASMMAAIQTL 352
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ GK++ +LG MLELG HE + S A ID++ +G+
Sbjct: 353 -SMLPRGKKIAVLGGMLELGEWAVTEHEALGSAVVQANIDVLITLGE 398
>gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Carboxydothermus hydrogenoformans Z-2901]
gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Carboxydothermus hydrogenoformans Z-2901]
Length = 458
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 198/382 (51%), Gaps = 20/382 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P F A+ G+ D HEF+ P+ KG GV+ V + Q+
Sbjct: 27 VSTDTRTLKPY--ALFVALHGEKLDGHEFV-PDAVAKGAAGVV---VERPFSINVTQIVV 80
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T +L +A Y R V +G+TGS GK+TTK ++ L NV + N+
Sbjct: 81 K---DTFRALQELALYNRQKEGLKV-IGITGSNGKTTTKDLVKAVLRQ-KYNVCATEKNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ D ++ ++EMGM G GEI L ++ARP+I ++ N+G++HLE L S
Sbjct: 136 NNELGVPLTLLNFDENTEVGIVEMGMRGLGEIDALCQVARPDIGIITNIGEAHLELLKSQ 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++ARAK E+ + V ++N + P + + V+K FFG R G D+ + +
Sbjct: 196 ENIARAKSELIKNLPGDGVAIINGESPYIKEIVANIPVKKYFFGHRAG-DLYIKKFSQED 254
Query: 289 GGLGVQV--VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
GL +LE+E F +P G+H A+NA AA A GV + + LS
Sbjct: 255 DGLRFITAGILEEE-----FFLPLFGVHNAVNALAAILTALTLGVRVPLIKKGLSEVELT 309
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR E+ S +KI+ D YNA+P S AA+ +L G+++ +LG+M ELG E
Sbjct: 310 GMRLEIQFIGS-MKIIKDYYNASPTSMEAALKVLAGTGQKGRKIAVLGEMYELGDFETTG 368
Query: 407 HEKILSYCCDACIDLIGLVGDR 428
H ++ +D + VG +
Sbjct: 369 HRRVGEVASKLGVDFLITVGPK 390
>gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X561]
gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X513]
gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X561]
gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter sp. X513]
gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 461
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 221/408 (54%), Gaps = 25/408 (6%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 6 IDEIVRATEGKLIKGNLKDKVMGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAI-DK 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVN------TLNSLVNMACYARNSRFSGVLVGVTG 139
G VI ++ N V+ + +VN TL +L +A Y R +F+ + VTG
Sbjct: 63 GASAVITARLDN------VECLKDFSVNVIYVNETLEALHKIASYYR-KKFNIPFIAVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGM+G GE
Sbjct: 116 SSGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGE 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L +A P++ V N+G +H+E LGS E++ +AK E+ + K +V VLNADD +++
Sbjct: 175 IRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSK 234
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ + + +G + G + A + ++ L+ + + + PG+H N+
Sbjct: 235 IPLQYSSKYYRYGIKSG---EIKACDIEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNS 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA V FG+++ + +L +F P +MR ++ I + YNANP S +AA+ +
Sbjct: 292 LAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDD-VYNANPDSMKAALSV 350
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
L+D+ +++ +LGDMLELG E+H++I D+ ID++ GD
Sbjct: 351 LRDLPAK-RKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGD 397
>gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
gi|149753344|gb|EDM63275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dorea
longicatena DSM 13814]
Length = 456
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 214/381 (56%), Gaps = 17/381 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + P F AI G+ +AH+FI P+ G + V+ ++ D ++ VE
Sbjct: 31 VVIDSRKVQPG--YLFVAIDGERVNAHKFI-PDTVKAGAMCVVSHEDLGETDFPYILVES 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
G +L+++A R+S F +VG+TGSVGK++TK MIA L + +V ++ GN+
Sbjct: 88 TGQ-----ALLDIAKLYRDS-FDMKVVGITGSVGKTSTKEMIASVL-AQKYHVHKTLGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN G+ +++ + ++AVLEMG++ GE+ L+ +A P+I V+ N+G +HLE +
Sbjct: 141 NNEWGLPITIFDMPEDTEVAVLEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E + + K ++ Q+ K G +LN DD L++ ++ +GV VFFG C R A +
Sbjct: 201 EGILQEKSQMIQDMKNGGSIILNGDDDLLSKMSPVKGVTPVFFGMGDNCAFR--ADNIEP 258
Query: 289 GGL-GVQVVLE-KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
GL G + K+ ++P PG+H+ NA A AAV G++ ++ + + +
Sbjct: 259 QGLRGTSCTITLKDGSSFDCLVPVPGIHMVSNAVAGAAVGYTLGLTADEIKAGIESLPSI 318
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R+ ++ + I I++D YNANPIS +A+ID+L G++V +LG+M ELG T
Sbjct: 319 PGRNHIIETDHMI-ILDDCYNANPISMKASIDVLN--MAIGRKVAVLGNMGELGDTAEAL 375
Query: 407 HEKILSYCCDACIDLIGLVGD 427
H ++ +Y + +DL+ +GD
Sbjct: 376 HAEVGTYAAEQNVDLVCGIGD 396
>gi|390934666|ref|YP_006392171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570167|gb|AFK86572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 457
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 215/411 (52%), Gaps = 29/411 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
I T+ EI ++ GK+L G I I TD+R + F + G+ F+ EFI
Sbjct: 2 ILTVKEILDATEGKLLS-GDINICVSGISTDSRTIKSG--DLFIPLKGERFNGEEFIDDA 58
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L + +K + V+ +T ++L +A Y R S+F + VTGS
Sbjct: 59 LNVASASLTESINYIRHDNKPIIFVK-----DTKDALHRIAKYYR-SKFDIPFIAVTGSS 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L S+ NV ++ GN+NN +G+ L+L ++ ++AV+EMGMSG GEI
Sbjct: 113 GKTTTKDMIYDVL-SMKYNVLKTIGNFNNEIGLPLTLFKLNDDHEMAVVEMGMSGFGEIR 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L +A P + V N+G +H+E LGS E++ +AK E+ ++ K GD V+NADD ++ L
Sbjct: 172 RLKNIASPNVAVYTNIGVAHIEKLGSRENILKAKSELIEDFKDGDTIVINADDDMLIKLL 231
Query: 262 VPRGVRKVFFGWRRG----CDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
+G + V +G G D+ L L VL+ E + PG H
Sbjct: 232 DKKGPKFVTYGINNGNIKAFDIELKEESSKYKVLIDGCVLDVE-------LNVPGKHNIY 284
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N+ AA + F V+ + +LS F P MR ++ GIKI+ND YNANP S +AA+
Sbjct: 285 NSLAAICIGIQFDVNKDDIRKALSEFQPSAMRLN-IIDAFGIKIINDVYNANPSSMKAAL 343
Query: 378 DLLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+L A GKR + +LG+MLELG +H ++ + + ID++ VGD
Sbjct: 344 SVLGGYA--GKRKIAVLGNMLELGQYADVAHREVGEHVKENDIDVLITVGD 392
>gi|423421600|ref|ZP_17398689.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3X2-1]
gi|401097262|gb|EJQ05290.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3X2-1]
Length = 458
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 209/410 (50%), Gaps = 27/410 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+
Sbjct: 5 TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDK--- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
V V W KG N V +TL++L +A R+ + +VGVTG
Sbjct: 60 -----AVESGAVATLWMKGVANPPENLPVIFVEDTLSALQMLAKNYRD-QLDVKVVGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GE
Sbjct: 114 SNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 173 IEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN 232
Query: 260 LTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
VP V FG R D V G + +E E + F IP G H
Sbjct: 233 -RVPEMNLAAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHNV 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
N A+ A+A FGV+ ++ L MR E++ + +G+ I+NDAYNA+P + AA
Sbjct: 289 YNTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNTGLTIINDAYNASPTAMEAA 348
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 349 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
DSM 5476]
gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
DSM 5476]
Length = 467
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 209/390 (53%), Gaps = 19/390 (4%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
N T+ ++A++V G++ + + D R++ F AI G+ FD H+FI P
Sbjct: 18 NLEALTLIQVAQAVRGELRNPADLTVNAVVIDNRLV--TTGCLFVAIRGERFDGHDFI-P 74
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTG 139
+ G + ++ D+ ++ V+ +T +L+++A CY R F G++VGVTG
Sbjct: 75 SAFESGAAAAVSDREIET-DRPYILVK-----DTREALLDLARCYRR--AFDGLVVGVTG 126
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK MIA L S G ++ GN NN +G+ ++ +D + AV+EMGMS GE
Sbjct: 127 SVGKTTTKEMIAAVL-SAGYKTLKTQGNLNNAIGLPRTIFELDSTYEAAVIEMGMSALGE 185
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L R A P+I V+ N+G SHLE+LG+ E++ +AK EI + G V+N D+ L+
Sbjct: 186 ISLLTRTALPDIGVITNIGVSHLETLGTRENILKAKLEILEGMAPGAPLVINGDNDLLQT 245
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ + R V D A + G + + V ++P+ G H +NA
Sbjct: 246 VQLDRPVLTCGID---NPDADYRAVNIQPRGFDTEFDIVYGENAVHVLLPAIGEHNVLNA 302
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AV G+ A + +L ++P MR + +G+ ++ D YNA+P S RAA+
Sbjct: 303 LFGFAVGRFAGMEDAAIATALGTYTPSGMRQNTR-TVNGVMLIEDCYNASPDSMRAALTT 361
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEK 409
L+ ++C G+++ +LGDMLELG +++H +
Sbjct: 362 LQQLSCAGRKIAVLGDMLELGPVSQQAHAE 391
>gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 461
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/401 (34%), Positives = 224/401 (55%), Gaps = 21/401 (5%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 6 IAEIVRATEGKLIKGSLKDKVIGISTDSRKVK--KDELFIPLKGEKYDGEDFVKDAM-TK 62
Query: 86 GCVGVIGNQVCNNW---DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G V+ ++ N D F + N +TL +L +A Y R +F+ V VTGS G
Sbjct: 63 GAKAVLTARLDNIEYLRDFPFNVIYVN---DTLEALHKIASYYR-KKFNIPFVAVTGSTG 118
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGMSG GEI
Sbjct: 119 KTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRR 177
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L + +P++ V N+G +H+E LGS E++ +AK E+ ++ K +V VLNADD +++ + +
Sbjct: 178 LKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSKIPL 237
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
+ +G + G + A + G G++ L+ + + + PG+H N+ AA
Sbjct: 238 QYSSKYYRYGIKNG---EIKACNIEKGEKGIKYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
V FGV + + L +F P +MR ++ + IKI++DAYNANP S +AA+++L+D
Sbjct: 295 ICVGLEFGVDVDDMAEVLKDFQPGKMRLN-IIEKGDIKIIDDAYNANPDSMKAALNVLRD 353
Query: 383 IACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLI 422
GKR + +LGDMLELG E+H +I D+ ID++
Sbjct: 354 FP--GKRKIAVLGDMLELGEYSVEAHREIGKLVADSHIDIL 392
>gi|357053195|ref|ZP_09114295.1| hypothetical protein HMPREF9467_01267 [Clostridium clostridioforme
2_1_49FAA]
gi|355385962|gb|EHG33006.1| hypothetical protein HMPREF9467_01267 [Clostridium clostridioforme
2_1_49FAA]
Length = 478
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 225/420 (53%), Gaps = 29/420 (6%)
Query: 28 TINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+ E+ G +L + G I D+R + + F I G+ DAH F+ +
Sbjct: 5 TVKELLEATGGNLLLGQEDQHAGHISLDSRKM--EGDDLFVPIVGERVDAHLFLCQAI-A 61
Query: 85 KGCVGVIGNQVCNNWD--KGFVQVEGNGN---------------VNTLNSLVNMACYARN 127
G V ++ + W+ K V+ + GN +T +L ++ + R
Sbjct: 62 SGAAAVFTSE-HHRWEDVKASVRQQCGGNREQEKKALGAAWIEVPDTKKALQDLGSFCRK 120
Query: 128 SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDI 187
R + LVG+TGSVGK+TT+ MIA AL S G V+++ GN N++VGV +++ I ++ +I
Sbjct: 121 -RLTLPLVGITGSVGKTTTREMIAEAL-SAGFLVYKTPGNSNSQVGVPITIAEIPQSAEI 178
Query: 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDV 247
V+E+GMS GE+ ++R+AR + V+ N+G +H+E LGS E + K I +
Sbjct: 179 GVIELGMSEPGEMERISRVARVDCAVITNIGVAHIEQLGSQEHILEEKLHIQDGMPAEGI 238
Query: 248 CVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFV 307
LN DDPL+A++ G ++V +G R CD R + G V + +R V+
Sbjct: 239 LFLNGDDPLLASVVPKEGRKRVLYGLGRDCDYRAEDLYLEE-GYPVFTAVHGDRS-VRVR 296
Query: 308 IPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367
+ G H+ NA AA AVA +G+S+ + ++L F + R ++ G+ +++D+YN
Sbjct: 297 LQVMGSHMVSNAMAALAVADTYGLSMEKAALALGQFKGYKGRQQIF-QWGGVTVIDDSYN 355
Query: 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
A+P+S +A +++L + G+R+ +L DM ELG HE+I +Y + +D++ L+G+
Sbjct: 356 ASPVSMKAGLEVLASVKGEGRRIAVLADMKELGLEAVRFHEEIGAYIGEHPLDMVLLLGE 415
>gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Solibacter usitatus Ellin6076]
gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Solibacter usitatus Ellin6076]
Length = 442
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 209/376 (55%), Gaps = 22/376 (5%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV-NTLNSLVNMA 122
+FA+ G + D H+FI+ + + V+ ++ + V G V +TL +L N+
Sbjct: 39 YFALRGPNHDGHDFIAAAVEKRASALVV--------ERAY-GVPGELVVPDTLRALQNLG 89
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+AR + + G ++GVTGS GK+TTK IA L S + V ++ GN+NN VGV LSL+ +
Sbjct: 90 AWARRN-WGGTVIGVTGSAGKTTTKDAIAHLLASE-MPVGKTVGNFNNHVGVPLSLLRLP 147
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
V+EMGM+ GEI EL +ARPEI VV NVG +H+E S+E +A AK E+ +
Sbjct: 148 DGCRAGVIEMGMNHSGEIRELGAIARPEIGVVTNVGYAHVEFFDSIEGIALAKRELIEGL 207
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
V VLNADDP VA + R + FG ++R GG + +
Sbjct: 208 TPDGVAVLNADDPRVAGFSAVHPGRSITFGLSEHAEIRAEDVAAHAGGTRFRAL------ 261
Query: 303 MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIV 362
++F G H +N AA AVAT+FG++ A++ ++++F+ +MR E +GI I
Sbjct: 262 GMEFETGLSGRHAVMNLLAAIAVATVFGIAPARMRDAVASFAAGKMRGE-RTEHNGIVIW 320
Query: 363 NDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID-L 421
ND YN+NP + ++ ID+L++ +R+ +LG+MLELG E H ++ Y + +D L
Sbjct: 321 NDCYNSNPEAAQSMIDVLRETPAR-RRIAVLGEMLELGHAADELHRQVGRYAAEHGVDLL 379
Query: 422 IGLVG-DRVVVQCKWR 436
IG+ G R +V+ R
Sbjct: 380 IGVRGAARAMVESAAR 395
>gi|389577556|ref|ZP_10167584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium cellulosolvens 6]
gi|389313041|gb|EIM57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium cellulosolvens 6]
Length = 465
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 136/411 (33%), Positives = 212/411 (51%), Gaps = 28/411 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQ-------WFFAITGQHFDAHEFISP 80
T+ I E G GP G C DT + + F AI G+ D H FI P
Sbjct: 5 TLRNITEVCGGTY--HGPEG--CLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFI-P 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G + + DK + V +TL ++ ++A + ++ LVG+ GS
Sbjct: 60 GSFADGALAALAEVAPAETDKAVILVP-----STLQAIKDIAEFYL-AQLPADLVGIIGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK++TK M+A L + ++ GN+NN VGV L+ + +I VLEMG++ GE+
Sbjct: 114 VGKTSTKEMVAAVL-AQKYRTLKTEGNFNNEVGVPLTAFRMREEDEIGVLEMGINHFGEM 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++ RP+ V NVG +HLE LGS + + +AK E+F ++N DD ++ +
Sbjct: 173 HRLAKITRPDTVVFTNVGTAHLEFLGSRDGILKAKSEVFDFMDEKGHVIVNGDDDKLSTI 232
Query: 261 TVPRGVRKVFF-----GWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
+ GV V F G+ DV V++G G+ V+ E + +IPS G H+
Sbjct: 233 SEVHGVAPVRFGIGEQGYSHPNDV-WADGIVSHGLEGISCVIHTEAGSFEVMIPSSGRHM 291
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
NA A AV ++G++L Q+ + ++ P+ R ++ S +++D YNANP S +A
Sbjct: 292 IYNALAGTAVGLVYGLTLEQIRSGIESYMPLSGRFHIIKGDS-YTVIDDCYNANPGSMKA 350
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+I +LK+ G+RV ILGDM ELG E+ HE++ +Y + IDLI VG
Sbjct: 351 SISILKEAL--GRRVAILGDMGELGEKEKAYHEEVGAYAAEQGIDLICCVG 399
>gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Ahrensia sp. R2A130]
gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[Ahrensia sp. R2A130]
Length = 1015
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 144/423 (34%), Positives = 220/423 (52%), Gaps = 38/423 (8%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI-------ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
P+WT++ + E+ G W P G + DTR L P +FAI G D H+F
Sbjct: 542 PLWTLDAMGEATKG----WLPDGDTEIAITGLSIDTRSLQPG--DAYFAIRGDVHDGHKF 595
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN-GNV----NTLNSLVNMACYARNSRFSG 132
++ V V V +W ++EG+ G + + L++LV + AR +R S
Sbjct: 596 VAAAHAAGATVSV----VAKDW---VGRLEGDCGRLLVVDDVLHALVRLGLAAR-ARTSA 647
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
+V +TGSVGK+TTK M+ L + G +V + ++NN GV L+L + D AV+E+
Sbjct: 648 QVVAITGSVGKTTTKEMLRTGLAACG-HVHAAVASFNNHWGVPLTLARMPADSDFAVIEI 706
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GM+ GEI L +M RP + ++ NV HL + S++++A AK EIF G VLNA
Sbjct: 707 GMNHPGEITPLVQMTRPHVAIINNVAAVHLGAFDSVDEIAHAKSEIFDGLIPGGTAVLNA 766
Query: 253 DD---PLVANLTVPRGV-RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
DD P++ + V V FG DVRL + + + + E M+K +
Sbjct: 767 DDERLPIMLDRATEAEVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLK--V 824
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE---LLVSRSGIKIVNDA 365
+PG H+A NA AVA LF LA+V ++L+ V+ R + L V + +++++
Sbjct: 825 GAPGRHIAQNALVVLAVAKLFDADLAKVSLALAEMEAVKGRGQQHKLSVGQGAAVLIDES 884
Query: 366 YNANPISTRAAIDLL--KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIG 423
YNANP S A++DLL ++ A G+R+ +LGDMLELG+T + H I D I +
Sbjct: 885 YNANPTSMAASLDLLGSREPAPGGRRIAVLGDMLELGATSAQLHADIADPISDNRISRVF 944
Query: 424 LVG 426
L G
Sbjct: 945 LAG 947
>gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter italicus Ab9]
gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermoanaerobacter italicus Ab9]
Length = 461
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 138/403 (34%), Positives = 225/403 (55%), Gaps = 25/403 (6%)
Query: 29 INEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I EI + GK++K I TD+R + K++ F + G+ +D +F+ + K
Sbjct: 6 IAEIVRATQGKLIKGSLKDKIIGISTDSRKV--KKDELFIPLKGEKYDGEDFVKDAM-TK 62
Query: 86 GCVGVIGNQVCN-NWDKGF----VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G V+ ++ N + K F + V +TL +L +A Y R +F+ V VTGS
Sbjct: 63 GAKAVLTARLDNIEYLKDFPFNIIYVN-----DTLEALHKIAYYYR-KKFNIPFVAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S V ++ GN+NN +G+ L++ ++ IAV+EMGMSG GEI
Sbjct: 117 TGKTTTKDMIAQIL-SKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + +P++ V N+G +H+E LGS E++ +AK E+ ++ K +V VLNADD ++ +
Sbjct: 176 RRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLLKI 235
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ +G + G + A + G G++ L+ + + + PG+H N+
Sbjct: 236 LQQYSSKYYRYGIKSG---EIKACDIEKGEKGIEYTLKYKNLEKEIKLSIPGIHNVYNSL 292
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA V FGV + + +L +F P +MR ++ + IKI++DAYNANP S +AA+++L
Sbjct: 293 AAICVGLEFGVDVDDMAEALKDFQPGKMRLN-IIEKGDIKIIDDAYNANPDSMKAALNVL 351
Query: 381 KDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+D GKR + +LGDMLELG E+H++I D+ ID++
Sbjct: 352 RDFP--GKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDIL 392
>gi|423405052|ref|ZP_17382225.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-2]
gi|423479889|ref|ZP_17456603.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6X1-1]
gi|401645695|gb|EJS63345.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-2]
gi|402424281|gb|EJV56467.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6X1-1]
Length = 458
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/393 (33%), Positives = 209/393 (53%), Gaps = 25/393 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKV--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D VA G + ++ E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVALQATGTHFKMNRD-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
DL+ + K++V+LGDMLELG+ E + H ++
Sbjct: 350 DLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEV 382
>gi|404495265|ref|YP_006719371.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
metallireducens GS-15]
gi|418065732|ref|ZP_12703103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
metallireducens RCH3]
gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
metallireducens GS-15]
gi|373561812|gb|EHP88038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
metallireducens RCH3]
Length = 470
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 148/409 (36%), Positives = 218/409 (53%), Gaps = 22/409 (5%)
Query: 26 IWTINEIAESVNGKILKWGP-PGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++++ +I E+ G + G G+ + TD+R + P + F + G+ FD H+++
Sbjct: 2 LFSLADIREATGGTLGGEGKTAGVEGVSTDSRTVQPG--ELFVPLRGERFDGHDYL---- 55
Query: 83 YGKGC-VGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVT 138
G C GV + W + G V +TL +L ++AC+ R RF+ +V VT
Sbjct: 56 -GAACDRGVQVVLAEHQWLEKNELPPGVSAVAVDDTLEALGDLACFHRQ-RFAIPVVAVT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+A L G ++ GN NN +G+ L+ +D + AVLEMGMS G
Sbjct: 114 GSNGKTTTKEMLAAILGQTGPG-LKTEGNLNNLIGLPQMLLRLDNSHRWAVLEMGMSAFG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI LA +ARP++ ++ N +HLE+LGS+E VARAKGE+F V NADDPL+A
Sbjct: 173 EIDRLAEIARPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLPAEGCAVFNADDPLIA 232
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGLHLAI 317
P GVR+V FG + + A V N G G + +L E V + + G H
Sbjct: 233 RCPSPDGVRRVSFGLH---NADVTAEAVENLGRNGQRFILRLSTESVPVTLRAFGRHNIA 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
NA AAAA A + GV + L FSP R L + +++D+YNANP S AA+
Sbjct: 290 NALAAAAAAHVLGVPTETIARGLGEFSPYARRFN-LEEVGDVILIDDSYNANPASMAAAL 348
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L++I + V +LGDMLELG E+H + L C+D + ++G
Sbjct: 349 TTLREIRAGRRAVAVLGDMLELGEGAEEAHRQ-LGLLAATCVDRLYVMG 396
>gi|373458537|ref|ZP_09550304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Caldithrix abyssi DSM
13497]
gi|371720201|gb|EHO41972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Caldithrix abyssi DSM
13497]
Length = 450
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 199/365 (54%), Gaps = 19/365 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISP-ELYGKGCVGVIGNQVCNNWDKGFVQVE 107
I TD+R + PN F+ + G+ +DAH+F+ L G C V Q + F QV
Sbjct: 33 INTDSRKIGPN--DVFWVLIGERYDAHDFVPAVALSGALCAVV---QRAVEMPRPFPQVV 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L A R RF+G ++G+TGS GK++TK +IA L+ V ++ GN
Sbjct: 88 V---PDTLKALQQFAHLNR-QRFNGTVIGLTGSNGKTSTKELIAHLLQG-KQTVHKTSGN 142
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +G L+L+ ++ + D AV+EMG + GEI LAR+ +P+ ++ N+G +HLE +
Sbjct: 143 LNNHIGCPLTLLELNNSFDFAVIEMGTNHPGEIELLARITQPDAALITNLGTAHLEFFKT 202
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV- 286
++ +AR K +F + G +NADDP +A VR + +G + DVR V
Sbjct: 203 MDAIAREKLSLFDQMAPGKTIFVNADDPHIAGYQRTDLVR-ITYGLKEKADVRARIISVD 261
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
NG + ++ E VK + PG H NA AA+AVA +G+S A++ L +++
Sbjct: 262 PNGNVRFEL-----NEKVKIQLRVPGKHNVQNALAASAVALFYGLSEAEIKDRLQSYTAF 316
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R ++L G++I+NDAYNANP S A L+ + G +++LGDM ELG +
Sbjct: 317 DKRMQVL-QHGGLRIINDAYNANPESMAVAFQALQQMEKGGGLILVLGDMFELGDQALQM 375
Query: 407 HEKIL 411
H+ +L
Sbjct: 376 HKDVL 380
>gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dictyoglomus thermophilum H-6-12]
gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dictyoglomus thermophilum H-6-12]
Length = 465
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 207/381 (54%), Gaps = 16/381 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV-QVE 107
I TD+R + K+ F A+ G+ FD HEF+ + KG GVI ++ N DK F+ +V+
Sbjct: 30 ISTDSRNI--KKDDVFIALKGEKFDGHEFVKDAIL-KGAKGVIVSRDVNLEDKAFIIKVQ 86
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L ++A Y + + ++G+TGS GK+TTK+++ L+ +G V+ S N
Sbjct: 87 -----DTLKALQDIANYYLKT-LNAKVIGITGSSGKTTTKNLVGRLLKLIG-KVYVSKEN 139
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +GV LS++ ++ VD VLEM M GKGEI L+++A P+I V+ N+G +H+ LGS
Sbjct: 140 FNNEIGVPLSILEAEKDVDFLVLEMAMRGKGEISLLSKIAEPDIGVITNIGWAHIGRLGS 199
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E + AK EIF K + +LN DD + ++K FG+ G D+R +
Sbjct: 200 REAIMEAKAEIFDYIKEDGIAILNRDDSFSMKIYERLHIKKYTFGFEEGSDLRGLILDKG 259
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
+ + + + + P L I +A+ L+ +S + +F
Sbjct: 260 KESYTLGLYFPDGK---RLTLSLPVYPLNIYRNLLSALLVLWSISPESIYRVKEDFDFTL 316
Query: 348 MRSELLVSRS--GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
+ L V R+ G+ I++D YNANP S + AI+ L+ + G++V +LGDMLELG+ E
Sbjct: 317 PKQRLDVKRNKDGLVIIDDTYNANPDSMKTAIEYLELLDVPGRKVALLGDMLELGNYSIE 376
Query: 406 SHEKILSYCCDACIDLIGLVG 426
H++++ ID+I L G
Sbjct: 377 GHKEVIEEVLKRNIDVIVLYG 397
>gi|421074499|ref|ZP_15535530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans JBW45]
gi|392527370|gb|EIW50465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans JBW45]
Length = 452
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 139/405 (34%), Positives = 221/405 (54%), Gaps = 18/405 (4%)
Query: 27 WTINEIAESVNGK-ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T+ E+ + G I+ P G + TDTR + K F + G++FD HEFI +
Sbjct: 4 FTVEEVCLATKGTLIVSAQPKGFTGVSTDTRTV--QKGDLFIPLIGENFDGHEFIHQAIE 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG +GV+ + + Q+ ++L +L ++A + R RF+ +V +TGS GK
Sbjct: 62 -KGAIGVVFSHKNMTLPQ---QITAIFVTDSLLALQDLARFHRQ-RFTIPVVAITGSNGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M A L S +V ++ N+NN +G+ L+L+ + + ++AV+EMGM GKG+I +L
Sbjct: 117 TTTKDMAAAVL-SNQFHVLKTEANYNNEIGLPLTLLQLTQEHEVAVVEMGMRGKGQIRQL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
A +A P I ++ NVG++HLE LGS+E++A AK E+ + V +LN D+ V
Sbjct: 176 ANIALPTIAIITNVGETHLELLGSMEEIAAAKAELLEVIPENGVSILNGDNVYVREKAKK 235
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
R VFFG + G D++ A + + V ++ IP+ G H NA AA
Sbjct: 236 AKSRIVFFGLQEG-DIK--ADNIHIKAQSIDFVCRMTNDVFTVDIPTTGKHNVYNALAAI 292
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG-IKIVNDAYNANPISTRAAIDLLKD 382
A+ G++ + F+ MR L + R G +VNDAYNA+P+S AAID + +
Sbjct: 293 ALGMELGMNADGISSGFRAFNASPMR--LHIERFGDYLVVNDAYNASPMSMVAAIDTMLE 350
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+A G++V +LGDMLELG+ +HE I I+++ VG+
Sbjct: 351 VA-KGRKVAVLGDMLELGTIAVSAHEAIGEKLAQCGIEIVVTVGE 394
>gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. JDR-2]
gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. JDR-2]
Length = 459
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 200/387 (51%), Gaps = 27/387 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWD--KGFVQV 106
+ TDTR + P Q F + G++FD H ++ + W+ + Q
Sbjct: 17 VSTDTRSIQPG--QLFVPLVGENFDGHSYV--------AQALQQGAAAALWETKRELPQE 66
Query: 107 EGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
+ + +TL +L +A R + V +G+TGS GK+TTK M+A L + V
Sbjct: 67 LADAPLLFVRDTLKALQQLATSYREELYVRV-IGITGSNGKTTTKDMVAAVLGT-AYKVH 124
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ GN NN +G+ L+++ +D D AVLEMGMSG GEI L +ARP++ V+ N+GD+HL
Sbjct: 125 KTAGNLNNHIGLPLTVLQLDEETDAAVLEMGMSGFGEIELLTNIARPDVAVITNIGDAHL 184
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRGCD 278
LGS E +A+AK EI G + + N D+PL +A +++P G + FG D
Sbjct: 185 LQLGSREGIAKAKLEIAHGLHSGGILLYNGDEPLLAAELAGMSLPEGTQLQTFGLGESND 244
Query: 279 VRLVAAQVANGGLGVQVVLEKERE---MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQ 335
AA + G + ++++ + + IP PG H NA AA A+ FG+S
Sbjct: 245 --WSAADIEVGAVSSAFAVKRKGQDTVSAPYTIPVPGQHNVSNALAAIAIGRRFGISEEN 302
Query: 336 VGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395
+ L MR + + + +G I+NDAYNANP + RAAIDL+ ++ ++ ++LGD
Sbjct: 303 IRNGLIGLELTGMRIQPVKAHNGAMILNDAYNANPTAVRAAIDLVGQLSGFRRKWIVLGD 362
Query: 396 MLELGSTERESHEKILSYCCDACIDLI 422
M ELG E H + +Y D +
Sbjct: 363 MRELGPEEESLHFETGAYITPDKADAV 389
>gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. spizizenii str. W23]
gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. spizizenii str. W23]
gi|407956154|dbj|BAM49394.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis BEST7613]
gi|407963425|dbj|BAM56664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis BEST7003]
Length = 457
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 198/376 (52%), Gaps = 30/376 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L ++Q F + G+HF+ H F+ P+ + G V+ WD+
Sbjct: 30 VATDTRKL--EQHQLFIPLKGEHFNGHTFV-PQAFEAGVAAVL-------WDRSEPNPPE 79
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
N V +TL++L +A A ++GVTGS GK+TTK MI L + V ++
Sbjct: 80 NQAVILVDDTLSALQQLAK-AYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTR-YRVHKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+++ + +IAVLEMGMS KGEI L+R+A P+ V+ N+G+SH++
Sbjct: 138 GGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAA 284
LGS E +A AK EI K V + D+PL L + +G D +L
Sbjct: 198 LGSREGIAEAKLEIINGLKEDGVLIYIGDEPL---LQKTYSCQTKTYGAGAQNDYQLQDV 254
Query: 285 QVANGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+ G + +EK F IP G H +NA AA A FG++ LS
Sbjct: 255 SQSEEGTHFTIKGMEK-----TFFIPILGKHNVMNAMAAIAAGAYFGITPEDAAKGLSGL 309
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR EL+ + SGI I+NDAYNA+P S +AAI L + + GK++++LGDMLELG E
Sbjct: 310 KVTGMRLELIKTDSGISIINDAYNASPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLE 369
Query: 404 RESHEKILSYCCDACI 419
H++ C A I
Sbjct: 370 ETFHKE-----CGAVI 380
>gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus W]
gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus W]
gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 458
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 211/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A + R+ + ++GVTGS
Sbjct: 63 NGAVATLWVKDVANPPENLPVIFVE-------DTLSALQMLAKHYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|374324851|ref|YP_005077980.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
[Paenibacillus terrae HPL-003]
gi|357203860|gb|AET61757.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
[Paenibacillus terrae HPL-003]
Length = 467
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 195/382 (51%), Gaps = 21/382 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF-VQVE 107
+ TD+R P F +TG+ FD H ++ + G+G + W K
Sbjct: 29 VFTDSR--KPQAQGLFVPLTGERFDGHNYVQQIVSGEGAAAFL-------WQKDHGAPPA 79
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
GN A R +GV +VG+TGS GK+TTK ++ AL V ++ G
Sbjct: 80 GNAIEVDDTLAALQRLAAAYLRETGVSVVGITGSNGKTTTKDIVN-ALLGTTFKVHKTEG 138
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ + + DI +LEMGMSG+GEI L +A+P++ V+ N+G+SHL LG
Sbjct: 139 NYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEISLLTDIAQPDVAVITNIGESHLLQLG 198
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGWRRGCDVR 280
S ++ARAK EI K + + N D+PL+ + P G++ FG D
Sbjct: 199 SRAEIARAKLEIVSGLKPDGLLIYNGDEPLLPQVLAEPETVKPDGLKLFTFGIS--ADND 256
Query: 281 LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
+ G G + E F +P G H +N AA AVA FGV + V L
Sbjct: 257 DYPTGITADGEGSLFTTAQSGEDA-FRLPLLGQHNVVNGLAALAVARHFGVDVDHVREGL 315
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
S MR E++ +G+ ++NDAYNA+P S +AAI L G+++ +LGDMLELG
Sbjct: 316 SALKLTGMRIEVVTCTNGLTVLNDAYNASPASMKAAIQTLSGYETKGRKIAVLGDMLELG 375
Query: 401 STERESHEKILSYCCDACIDLI 422
E++ HE+I + +D++
Sbjct: 376 PEEKQFHEEIGLFAAKHDVDVL 397
>gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cytotoxicus NVH 391-98]
gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cytotoxicus NVH 391-98]
Length = 458
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 133/394 (33%), Positives = 208/394 (52%), Gaps = 27/394 (6%)
Query: 28 TINEIAESVNG-----KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T+ +I + VNG K G+ DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQIEKMVNGTGLAEKYFDMTAQGV-SIDTRKM--EKGNVYVPIQGERFDGHSFVEKAI 61
Query: 83 YGKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ V N N FV+ +TL +L +A R+ + + +VGVTG
Sbjct: 62 ESGAVATLWKRDVQNPPANMPVIFVE-------DTLEALQMLAKNYRD-QLNVKVVGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ +IAVLEMGMS +GE
Sbjct: 114 SNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEEDTEIAVLEMGMSSRGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+++ARP ++ N+G++HL LGS + +A AK EI + G V V N D+PL+ N
Sbjct: 173 IEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN 232
Query: 260 LTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
VP+ V + FG R D V G + ++ E V F +P G H
Sbjct: 233 -RVPKMDLAVETITFGDARAND--YYPTSVTLQATGTHFTMNRD-ENVLFYLPVLGKHNV 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
NA A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 289 YNALASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEVVKTNSGLTIINDAYNASPTAMEAA 348
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 349 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 382
>gi|390453131|ref|ZP_10238659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Paenibacillus peoriae KCTC 3763]
Length = 467
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 203/395 (51%), Gaps = 37/395 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----- 103
+ TD+R P F ++G+ FD H ++ + G + W K
Sbjct: 29 VFTDSR--KPQSQGLFVPLSGERFDGHNYVQQIMSEAGAAAFL-------WQKDHGAPPA 79
Query: 104 ---VQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
++VE +TL +L +A Y + S +VG+TGS GK+TTK ++ L++
Sbjct: 80 GNAIEVE-----DTLEALQQLAAAYLCETGVS--VVGITGSNGKTTTKDIVTALLDTT-F 131
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V ++ GN+NN +G+ L+++ + + DI +LEMGMSG+GEI L +ARP++ V+ N+G+
Sbjct: 132 KVHKTEGNYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIRLLTNIARPDVAVITNIGE 191
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGW 273
SHL LGS ++ARAK EI K G + + N D+PL+ + P G++ FG
Sbjct: 192 SHLLQLGSRAEIARAKLEIASGLKPGGLLIYNGDEPLLPQVLAEPATVKPEGLKWFTFGI 251
Query: 274 RRGCDVRLVA-AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVS 332
+ D A G L KE F +P G H +N AA AVA F V
Sbjct: 252 SKNNDDYPTAITSDEEGSLFTTAQAGKE----AFRLPLLGQHNIVNGLAALAVARHFNVD 307
Query: 333 LAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVI 392
+ LS+ MR E++ G+ ++NDAYNA+P S +AA+ L +G+++ +
Sbjct: 308 ADHIRKGLSSLKLTGMRIEVVRCSDGLTVLNDAYNASPASMKAALQTLSGYKTDGRKIAV 367
Query: 393 LGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
LGDMLELG E++ HE+I + ++ + G+
Sbjct: 368 LGDMLELGPEEKQFHEEIGLFAAKHDVEELFTYGE 402
>gi|350264710|ref|YP_004876017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349597597|gb|AEP85385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 457
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 143/401 (35%), Positives = 208/401 (51%), Gaps = 34/401 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L + Q F + G+HF+ H F+ P+ +
Sbjct: 5 TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKL--EQQQLFIPLKGEHFNGHTFV-PQAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL++L +A A ++GVTG
Sbjct: 62 EAGVAAVL-------WDRSEPNPPENQAVILVDDTLSALQQLAK-AYLQELGTRVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 114 SNGKTTTKDMIHAVLGTR-YRVHKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 173 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 232
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVV-LEKEREMVKFVIPSPGLHLAIN 318
+ +G D L + G + +EK F IP G H +N
Sbjct: 233 ---AYSCQTKTYGTGAHNDYLLQDVSQSEEGTHFTIKGMEK-----TFFIPILGKHNVMN 284
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA A FG++ LS MR EL+ + SGI I+NDAYNA+P S +AAI
Sbjct: 285 AMAAIAAGAYFGITPEDAAKGLSGLKVTGMRLELIKTDSGISIINDAYNASPTSMKAAIL 344
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419
L + + GK++++LGDMLELG E H++ C A I
Sbjct: 345 LTESLEGYGKKMLVLGDMLELGDLEETFHKE-----CGAVI 380
>gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
Length = 461
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 140/412 (33%), Positives = 217/412 (52%), Gaps = 27/412 (6%)
Query: 28 TINEIAESVNGKILKWGPPG----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ EI E+ G LK G I D+R+ ++ F AI G++ DAH++I Y
Sbjct: 5 TVKEIVEASKGN-LKNGEGSESVKAIVIDSRL--AKEDTAFVAIVGENNDAHKYIGS-AY 60
Query: 84 GKGCVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
GC I G + D ++V+ +T +L ++ Y + +F + +G+TGS
Sbjct: 61 DLGCRVFIVNKGKDIDIKSDMNIIEVD-----DTSKALGDIGHYYK-KKFDILFIGITGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ M+ AL S + ++ N+NN GV L+L +D + + AV+EMGMSG GEI
Sbjct: 115 VGKTTTRDMVYAALSSERATL-KNEKNFNNHFGVPLTLFNLDSSYECAVIEMGMSGFGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA M P++ V+ N+G SH+E+LGS E + +AK EI G+ V+N DD ++ L
Sbjct: 174 EYLANMVNPKVAVISNIGLSHVENLGSQEGIFKAKMEITTGFVKGNTLVVNGDDKFLSTL 233
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
R + FG+ + D+ VA + + + + E K IP+ G H NA
Sbjct: 234 RDAERDYDLITFGFEKNNDIYCVAYDMTEDSIEFECSVMGNIE--KIFIPTVGKHNIYNA 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG-IKIVNDAYNANPISTRAAID 378
AA AV T+ G+S+ + LSNF MR + + + G ++ND YNA+P S A++
Sbjct: 292 MAAIAVGTVEGISMEGIKRGLSNFEATGMRQD--IRKIGEYTVINDTYNASPDSMEASLS 349
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
+L G+R+ +LGDMLE+G H ++ C D D+I VG+ V
Sbjct: 350 ILG--RYEGRRIAVLGDMLEMGDLAEFGHRRVGKACVDNS-DVIITVGESAV 398
>gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase
[Eubacterium eligens ATCC 27750]
gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase
[Eubacterium eligens ATCC 27750]
Length = 469
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 127/385 (32%), Positives = 212/385 (55%), Gaps = 21/385 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R +A + F AI G+ D H+FI + + KG VI + + + ++QVE
Sbjct: 31 ITIDSRKVA--EGGLFIAIKGERSDGHDFIG-QCFEKGAACVISEKELPDEEHSYIQVE- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L +L ++A RN+ +VG+TGSVGK++TK I+ L S V ++ GN+
Sbjct: 87 ----SSLQALKDLALLYRNN-LDVKVVGITGSVGKTSTKETISSVL-SEKYRVLKTLGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + ++AVLEMG+S GE+ L+++A+P+I V+ N+G HLE+LG+
Sbjct: 141 NNEIGLPLTVFRLTEDDEVAVLEMGISDFGEMDRLSKIAQPDICVITNIGLCHLENLGTR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ + +AK EIF + +LN DD ++ ++ G R + FG V A + +
Sbjct: 201 DGILKAKTEIFNHMNPDGIVILNGDDDKLSTISQVHGKRPLVFGISNKDGV--YADNIKS 258
Query: 289 GGL-GVQVVLE-----KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
GL G + + +P PG H+ NA AAA V ++ G+S ++ + N
Sbjct: 259 LGLDGTSFTIHGLDTADKYSTFDMTVPVPGHHMVYNAMAAALVGSVLGLSSLEIERGVRN 318
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
+ R+ ++ +G I++D YNANP+S +A++D+L D A G++V ILG M ELG
Sbjct: 319 LKTIAGRNN-IIKENGFTIIDDCYNANPVSMKASLDVL-DTAI-GRKVAILGSMFELGEN 375
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
E++ H + Y ID++ GD
Sbjct: 376 EKQMHYDVGMYLGTKDIDVLITAGD 400
>gi|348026408|ref|YP_004766213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera elsdenii DSM 20460]
gi|341822462|emb|CCC73386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera elsdenii DSM 20460]
Length = 456
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 141/409 (34%), Positives = 208/409 (50%), Gaps = 22/409 (5%)
Query: 26 IWTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++T EI ++ ++LK P +CTDTR +A K F A G F+ H+F+ L
Sbjct: 3 VFTSEEIIQATGARLLKPAAPVSFSEVCTDTRAIA--KGSLFVAFKGTSFNGHDFVGKAL 60
Query: 83 YGKGCVGVIGNQVCNNWD----KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G G + ++V ++ FV +TL + N+A + R RFS +V VT
Sbjct: 61 EA-GAAGAVVSEVRPEYEGLTAPLFVVA------DTLKAYQNLARFHRR-RFSIPVVAVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK++T++MIA L V Q+ N+NN +G+ +L+ + + V+EMGM G G
Sbjct: 113 GSVGKTSTRNMIATVLGE-KYKVLQTEKNFNNEIGLPKTLLQLTPDHEACVVEMGMRGLG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA + P I VV NVG SH+E LGS E++A+AKGE+ Q VLN DDP V
Sbjct: 172 QIAELAAIGEPTIGVVTNVGKSHIELLGSQENIAKAKGELIQALDEKGTAVLNGDDPFVR 231
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+T V +G G D + A + GV+ + +P G H N
Sbjct: 232 QMTALCQGTSVLYGT--GMDDAVRADAIVCDEQGVRFHCHCFGSGFEAAMPVIGRHNVYN 289
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA AV L G+S+ ++ L+++ + MR ELL +ND YNANP S AI
Sbjct: 290 ALAAIAVGHLTGLSIEEIQRGLASYRGMAMRQELL-HIGPYTFINDTYNANPASMAEAIR 348
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
L D+ G+++ +LG M ELG + HE I +D + +G+
Sbjct: 349 TL-DLLTKGRKIAVLGGMGELGDWAKREHEAIGRLVAQTGLDALITMGN 396
>gi|421860350|ref|ZP_16292481.1| UDP-N-acetylmuramyl pentapeptide synthase [Paenibacillus popilliae
ATCC 14706]
gi|410830098|dbj|GAC42918.1| UDP-N-acetylmuramyl pentapeptide synthase [Paenibacillus popilliae
ATCC 14706]
Length = 474
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 203/388 (52%), Gaps = 23/388 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTD+R + P F + G+ FD H ++ L G G + W
Sbjct: 30 VCTDSRSVLPGG--LFVPLAGERFDGHAYVEASLRA-GAAGAL-------WQVDRTLPGA 79
Query: 109 NGNV----NTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+G + +T +L +A Y + +V VTGS GK+TTK ++A L S V +
Sbjct: 80 SGPLILVDDTYAALQRLAAAYLAEGQVE--VVAVTGSNGKTTTKDLVASVL-SQRYRVHK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++ + +IAVLEMGMSG+GEI L+++ARP++ VV N+GD+HL
Sbjct: 137 TEGNFNNHIGLPLTVLSMPPETEIAVLEMGMSGRGEIELLSKLARPDVAVVTNIGDAHLL 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG----VRKVFFGWRRGCDV 279
LGS E++ARAK EI ++G + V + D+PLV R +R + FG CD+
Sbjct: 197 QLGSREEIARAKLEITAGLRVGGLFVCHGDEPLVDLALTEREPGERIRLLRFGLGERCDL 256
Query: 280 RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGIS 339
R G+ V + F IP G H +NA AA AV FG++ Q+
Sbjct: 257 RPTRMSGDGSGMAFAVPSAGGQGESVFHIPLLGRHNVMNAMAALAVGRRFGLTDEQIAAG 316
Query: 340 LSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLEL 399
L MR E V+ G ++NDAYNA+P S RAA+ +L D+ G+R+ +L DMLEL
Sbjct: 317 LVGARISGMRFERHVTPEGWVVLNDAYNASPTSMRAALSVLADMK-GGRRIAVLADMLEL 375
Query: 400 GSTERESHEKILSYCCDACIDLIGLVGD 427
G E H +I + +D++ G+
Sbjct: 376 GPQEATLHFEIGAELTPDKVDMVLTFGE 403
>gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 458
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 210/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTRLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1271]
gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1271]
Length = 458
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 211/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|386813907|ref|ZP_10101131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[planctomycete KSU-1]
gi|386403404|dbj|GAB64012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[planctomycete KSU-1]
Length = 468
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 206/408 (50%), Gaps = 23/408 (5%)
Query: 28 TINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ E A++VNG++ K + TD+R + FFAI G+HF+ H+FI +
Sbjct: 5 SFEEAAKAVNGQLTFADKNARIRGVSTDSRNV--QNGDLFFAIPGEHFNGHQFIVQAI-D 61
Query: 85 KGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G +GV+ ++ KG +QV NT+ +L ++A Y R + ++G+TGS
Sbjct: 62 DGAIGVVVSREHTLDLKGRSSSIIQV-----ANTITALGDLAKYYR-QKLGTRIIGITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK M L V +S ++NN +GV +++ I+ VLEMG + GEI
Sbjct: 116 NGKTTTKEMTYHLLSCFSPTV-KSQKSFNNFIGVPITIFEIENKHRYGVLEMGTNAPGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L L+ ++ PEI V++N+ +HLE LGS+E VARAKGEI + + G V V N D+P +
Sbjct: 175 LRLSEISNPEIAVIVNISKTHLEGLGSIEGVARAKGEILENIRTGGVFVYNIDNPWCITI 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ V FG+ +R + N G + + + IP PG H N
Sbjct: 235 ADRYKGKSVSFGFNHHAQIRCTDVKKKNTGYMITI-----NGYLDVYIPIPGDHNINNCL 289
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
A+ A+ G L + +LS+F MR E I ++NDAYNANP S AA+ L
Sbjct: 290 ASFAICYALGHDLRDLKDALSSFKLPSMRMEQQCI-GNITVINDAYNANPESVNAALQYL 348
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
+I +RV I GDMLELG + H ++ ID + VG+
Sbjct: 349 GEINTRNRRVFICGDMLELGKESYQLHREVGEKVARLNIDALWTVGEH 396
>gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
novyi NT]
gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
novyi NT]
Length = 457
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 220/413 (53%), Gaps = 27/413 (6%)
Query: 25 PIWTINEIAESVNGKI-LKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ EI ++V GK+ + G I TDTR + K+ F A+ G +F+A+++I
Sbjct: 2 ELLKFEEIVKAVRGKVHINSGNHKYNNISTDTRKIT--KDSIFVALKGDNFNANDYIVD- 58
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV------NTLNSLVNMACYARNSRFSGVLV 135
V G+ +C + F + N N NT +L+++A R S+ ++
Sbjct: 59 ------ASVKGSNLCIVDEIKFKDSDLNENTSIILVENTRKALLDLAELYR-SKLDIKVI 111
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGS GK++TK + A AL S VF++ GN+NN VG+ L + +D + D+AVLEMGMS
Sbjct: 112 GITGSTGKTSTKDLTAAALSS-KYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMS 170
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
EI LA++A+P+I ++ N+G SH+E+L + E++ +AK EI V ++N ++
Sbjct: 171 NFDEIHRLAKVAKPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSVLIVNKEND 230
Query: 256 LVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L+ TV K+ G+ + DV A + ++ + + E +F IP PG H
Sbjct: 231 LLK--TVKSNDYKLMSIGFEK--DVDYTAEDIFTDENHIEFTVCHKDEKERFNIPVPGKH 286
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
+N+ A G+ ++ + N S MR + +V + G IV+D+YNA+P S R
Sbjct: 287 NILNSMLAIVAGRTLGIEYDKLKQGIKNLSVTSMRLD-IVKKDGFTIVDDSYNASPDSMR 345
Query: 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AAID++ I N +++ ILG M ELG + H+++ Y + ID + VG+
Sbjct: 346 AAIDVINTIKGN-RKIAILGTMKELGKDSYKFHKEVAEYAKENNIDFLITVGE 397
>gi|423614481|ref|ZP_17590338.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD107]
gi|401237930|gb|EJR44376.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD107]
Length = 458
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 210/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITMQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVANPPANLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSQGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP+ ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPDAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D + G ++ E + F +P G H
Sbjct: 233 RVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETLSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|423525844|ref|ZP_17502296.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA4-10]
gi|401165635|gb|EJQ72952.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA4-10]
Length = 458
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 208/409 (50%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAVATLWMKDVANPPANLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++A L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVASILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSQGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D + G ++ E + F +P G H
Sbjct: 233 RVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETLSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus E33L]
gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
cereus E33L]
Length = 458
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 210/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus ATCC 4342]
gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus ATCC 4342]
Length = 458
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 210/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-42]
gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-42]
Length = 458
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 210/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIKGVSIDTRKI--EKGNLYIPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWVKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
sp. M18]
gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
sp. M18]
Length = 469
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 222/408 (54%), Gaps = 21/408 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++T+ EIAE+ G+++ ++C TD+R +AP + F + G+ FD H+FI+
Sbjct: 3 MFTLQEIAEATGGRLIGEAQ-AVVCAVSTDSRQVAPG--ELFVPLKGERFDGHDFITTA- 58
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTG 139
G+G + + +W G V +TL +L ++A + R RF LV VTG
Sbjct: 59 AGRGVTAFL---MAESWLAAHGLPAGASAVAVEDTLRALGDLAAWHRR-RFDLKLVAVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+A L G + ++ GN NN +G+ L+L + AV+E+GMS GE
Sbjct: 115 SNGKTTTKEMLARILAQTGPGL-KTEGNLNNLIGLPLTLFRLTGRERWAVVEIGMSEFGE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I LA +A P++ ++ N +HLE+LGS+E VARAKGE+F K G V V N DDPLV++
Sbjct: 174 IDRLAEIADPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKEGAVAVYNVDDPLVSS 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
V ++ FG RG +V + + + G + L E V + + G H N
Sbjct: 234 CPTHLNVTRLTFGL-RGAEVSSASIKSLGKEGESFTLRLPDGEEQV--TLKAYGRHNIYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AAAA A GV + + L F+P R + L +G+ +++D+YNANP S AA+
Sbjct: 291 ALAAAAAAHALGVPGQVIRLGLEEFTPYDKRFQ-LEEVAGVTLIDDSYNANPASMAAALA 349
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
LK++A + +LGDMLELG E+H + L A ++ + L+G
Sbjct: 350 TLKEVAGGARTAAVLGDMLELGLGTEEAHRE-LGGKAAATVERLYLLG 396
>gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus G9241]
gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus G9241]
Length = 458
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 210/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Moorella thermoacetica ATCC 39073]
gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Moorella thermoacetica ATCC 39073]
Length = 465
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 205/398 (51%), Gaps = 23/398 (5%)
Query: 28 TINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ EI +++ G ++ P ++ TD+R + P F A+ G+ FD H+FI L G
Sbjct: 5 TVREICDAIGGYLVAGDPAVVVKGLSTDSREIQPG--MAFVALKGERFDGHDFIGAALSG 62
Query: 85 KGC----VGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
G+QV + +QV+ +TL +L +A Y R G L+GVTG
Sbjct: 63 GAAAAIGTSFPGHQVVGLRPGQALIQVD-----DTLLALQKLAAYHRQKVLKGPLIGVTG 117
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK++IA L + + V ++ GN+NN +G+ ++L+ + AV+EM M GKGE
Sbjct: 118 SSGKTTTKNLIAAVLSPV-LKVLKTPGNFNNEIGLPMTLLRLAPWHQAAVVEMAMRGKGE 176
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I LA +ARP I V+ N+G +HL LGS+ ++A AKGE+ + VLN D+
Sbjct: 177 IASLAAIARPTIGVITNIGTTHLGLLGSIANIAAAKGELLAALPAEGLAVLNGDNEWCRR 236
Query: 260 LTVPRGVRKVFFGWRRGCDV--RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
L R VFF R ++ R + + G V KE V+ +P PG H
Sbjct: 237 LAATCPCRVVFFSTRGQGEIYARDIGDRGLEGTFFTAVFPGKE---VRVQLPVPGRHNVE 293
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
+A AA AV GV + SL+++ +R +L G + NDAYNANP S AA+
Sbjct: 294 DALAALAVGFSLGVEPETMARSLADWPAEDLRQDLRPGPGGSLVFNDAYNANPESMEAAL 353
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCC 415
L A G+RV +LG MLELG E E H ++ +
Sbjct: 354 QALG--ALPGRRVAVLGAMLELGPAEVELHRRVGRFAA 389
>gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus MM3]
gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus MM3]
Length = 458
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/393 (33%), Positives = 209/393 (53%), Gaps = 25/393 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A RN + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRN-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D VA G + ++ E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVALQATGTHFKMNRD-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG+ E + H ++
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEV 382
>gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Ames]
gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. 'Ames Ancestor']
gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Sterne]
gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0488]
gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0442]
gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0193]
gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0465]
gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0389]
gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0174]
gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Tsiankovskii-I]
gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus NVH0597-99]
gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH820]
gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus 03BB102]
gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. CDC 684]
gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus 95/8201]
gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BGSC 6E1]
gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0248]
gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. CNEVA-9066]
gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A1055]
gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Western North America USA6153]
gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Kruger B]
gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Vollum]
gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Australia 94]
gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus biovar anthracis str. CI]
gi|376264266|ref|YP_005116978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus F837/76]
gi|386734106|ref|YP_006207287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. H9401]
gi|421511439|ref|ZP_15958309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. UR-1]
gi|421641006|ref|ZP_16081574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. BF1]
gi|423553835|ref|ZP_17530162.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus ISP3191]
gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Ames]
gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. 'Ames Ancestor']
gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
anthracis str. Sterne]
gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0488]
gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0193]
gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0442]
gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0389]
gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0465]
gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0174]
gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. Tsiankovskii-I]
gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus NVH0597-99]
gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH820]
gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus 03BB102]
gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. CDC 684]
gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BGSC 6E1]
gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus 95/8201]
gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. A0248]
gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus biovar anthracis str. CI]
gi|364510066|gb|AEW53465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
cereus F837/76]
gi|384383958|gb|AFH81619.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. H9401]
gi|401182655|gb|EJQ89787.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus ISP3191]
gi|401818517|gb|EJT17717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. UR-1]
gi|403391873|gb|EJY89141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus anthracis str. BF1]
Length = 458
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 210/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWVKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis str. Al Hakam]
gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus 03BB108]
gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis str. Al Hakam]
gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus 03BB108]
Length = 458
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 210/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWVKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis BSn5]
gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis BSn5]
Length = 457
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 141/401 (35%), Positives = 207/401 (51%), Gaps = 34/401 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 5 TVKNIAEMVEGTLANPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHSFVE-QAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 62 EAGVAAVL-------WDRSVPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 114 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 173 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 232
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVV-LEKEREMVKFVIPSPGLHLAIN 318
+ +G D +L + G + +EK F IP G H +N
Sbjct: 233 ---AYSCQTKTYGTGTHNDYQLQDVSQSEEGTHFTIKGIEK-----TFFIPILGKHNVMN 284
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA A FG++ LS MR EL+ + SG+ I+NDAYNA+P S +AAI
Sbjct: 285 AMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQ 344
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419
L + + GK++++LGDMLELG E H++ C A I
Sbjct: 345 LTESLEGYGKKMLVLGDMLELGDLEETFHKE-----CGAVI 380
>gi|358067546|ref|ZP_09154024.1| hypothetical protein HMPREF9333_00905 [Johnsonella ignava ATCC
51276]
gi|356694199|gb|EHI55862.1| hypothetical protein HMPREF9333_00905 [Johnsonella ignava ATCC
51276]
Length = 469
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 199/362 (54%), Gaps = 15/362 (4%)
Query: 61 NQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSL 118
N F I G DAH+FI+ ++Y +GC + + KG ++ VE NT+ +L
Sbjct: 53 NSLFIPIVGARNDAHDFIN-DVYERGCRLTLTQRKDIRLIKGMNYIYVE-----NTVKAL 106
Query: 119 VNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS 177
++A + +N + + L+G+TGSVGK+TTK M+ AL S VF++ N N+++GV L+
Sbjct: 107 QDIAKAHRKNLKLT--LIGITGSVGKTTTKEMLWYALSS-AKKVFKTPANHNSQIGVPLT 163
Query: 178 LIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGE 237
L+ ID + DI V+E+G+S GE+ ++A + P+ ++ N+G++H+ +L S E + K +
Sbjct: 164 LLEIDESYDIGVIELGISEPGEMEKIASLVMPDSAIITNIGNTHILALKSKEGIRDEKFK 223
Query: 238 IFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL 297
I G V LNAD ++ V +G++K ++ R+ C + +G + +
Sbjct: 224 IMVGMAEGSVIFLNADSDILKKSDVYKGIKKEYYSGRKKCGYYADEVVIRSGLAHFKAHI 283
Query: 298 EKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357
E V+ + G H NA A A +G+ L +S F+ + R ++ RS
Sbjct: 284 GD--ETVEVSLNVYGRHQVSNAVVCLAAAAHYGIDLRSAASKISEFTGFKHRQQIYC-RS 340
Query: 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDA 417
GI I++D YNA+P S +AA+D+LKDI C+GK+V +L DM ELG + H I Y +
Sbjct: 341 GITIIDDTYNASPESMKAALDILKDIECSGKKVAVLADMKELGEDAEKMHRDIGRYLVEN 400
Query: 418 CI 419
I
Sbjct: 401 NI 402
>gi|403386629|ref|ZP_10928686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. JC122]
Length = 461
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 136/418 (32%), Positives = 227/418 (54%), Gaps = 39/418 (9%)
Query: 27 WTINEIAESVNGKILKWGPPG---IICTDTRILAPNKNQWFFAITGQHFDAHEFISP-EL 82
+INEI ++NGK++ G G + D+R + K FFA+ G++FD H ++
Sbjct: 4 LSINEIVNALNGKLILNGNIGNFKSVSIDSRKVE--KGNIFFALKGENFDGHNYLKQCSE 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQ-------VEGNGNVNTLNSLVNMACYARNSRFSGVLV 135
G G + ++ N+ N+ K ++ VE +T +L ++A Y R + + +V
Sbjct: 62 NGAGLL-IVHNE---NFKKADIKEYTSVILVE-----DTRKALRDLAEYYR-KKINIKVV 111
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGS GK++TK ++A AL S VF++ GN+NN VG+ L + ID + DIAVLE+GMS
Sbjct: 112 GITGSTGKTSTKDLVAAAL-SEKYKVFKTKGNFNNEVGLPLMVFDIDNSYDIAVLELGMS 170
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
EI L ++ARP++ V+ N+G SH+E+L + E++ +AK EI + ++ ++N D+
Sbjct: 171 NLDEIHRLTKIARPDVAVITNIGISHIENLKTRENILKAKMEIVDFFEKDNILIVNGDND 230
Query: 256 LVANLTVPRGVRKVFFGWRRG--CDVRLVAAQVANGGLGVQVVLEKEREMV--KFVIPSP 311
L++ + + F + G D A + G ++ + + ++ KF I
Sbjct: 231 LLSTVNSNK-----FITEKIGIESDYNFKACNIIIGEENIKFNVLENNSLIDEKFKINVL 285
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR-SGIKIVNDAYNANP 370
G H +N+ A AVA F V + + N MR L + + + IVNDAYNA+P
Sbjct: 286 GKHNVLNSLLAIAVARKFNVKYSDINKGFENLEATSMR--LDIEKCNKFTIVNDAYNASP 343
Query: 371 ISTRAAIDLLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S AAID+LK++ NGKR + +LG M ELG ++H + Y D +D++ ++ +
Sbjct: 344 DSMEAAIDVLKNL--NGKRKIAVLGSMKELGDESYKAHMDVAKYAKDNNVDMLLVISE 399
>gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH1134]
gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus F65185]
gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock4-2]
gi|365163835|ref|ZP_09359935.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. 7_6_55CFAA_CT2]
gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH1134]
gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock4-2]
gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus F65185]
gi|363614641|gb|EHL66124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. 7_6_55CFAA_CT2]
Length = 458
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 204/392 (52%), Gaps = 25/392 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEETTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 234 VPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 351 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 382
>gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Mitsuokella multacida DSM 20544]
gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Mitsuokella multacida DSM 20544]
Length = 459
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/392 (33%), Positives = 213/392 (54%), Gaps = 14/392 (3%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
P +T++E+ E+ ++ K I TDTR + P F A G+ F+ +F+ +
Sbjct: 2 PAFTLDEVREATGAQLYKMEHEEFTDIVTDTRKITPG--VLFLAFKGERFNGEDFVR-DA 58
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KG GV+ + C ++ +TL + +A +A RFS +V +TGS G
Sbjct: 59 VEKGASGVMVSTSCPKAQLAGLKTTVLIAEDTLTAYQQLA-HAWRMRFSLPVVAITGSNG 117
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK + A L + G V ++ N+NN +G+ L+L+G+ + AV+E+GM G +I
Sbjct: 118 KTTTKDLTAAVLSARG-PVLKTQANYNNEIGLPLTLLGLRKEHTAAVVEIGMRGLHQIEA 176
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-- 260
+A +A P + +V NVG++H+E LGS+E++A+AK E+ + G VLNAD+P VA +
Sbjct: 177 MAPIAAPTVGIVTNVGETHMELLGSIENIAKAKSEMVEAIPAGGTVVLNADNPYVAAMRS 236
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVAN-GGLGVQVVLE-KEREMVKFVIPSPGLHLAIN 318
GVR + FG + DVR + G + +E K RE F G H N
Sbjct: 237 QAREGVRVLTFGIEKEADVRAKEETIETIDGHETRFKIEWKGREQT-FTFAMVGRHNVYN 295
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA A G++ A+ L N +MR E+ ++ ++NDAYNA+P+S +AAI+
Sbjct: 296 ALAAIAAGFALGLTPAEAASGLRNLKATKMRFEVQDVKT-YHVINDAYNASPMSMKAAIE 354
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L ++ G+++ ++GDMLELGS E+H ++
Sbjct: 355 TLSEL-TKGRKIAVMGDMLELGSVSEEAHREV 385
>gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus ATCC 10876]
gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus ATCC 10876]
Length = 454
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 205/392 (52%), Gaps = 25/392 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L+ GI + DTR + K + I G+ FD H F+ +
Sbjct: 2 LKQVEQMVNGTGLEEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 59
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 60 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 111
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 112 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 170
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 171 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 229
Query: 262 VPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 230 VPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 286
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 287 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 346
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 347 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 378
>gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus R309803]
gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus R309803]
Length = 458
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/409 (33%), Positives = 209/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GII DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGIIIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 SGAVATLWMKDVANPPENLPVIFVE-------DTLLALQMLAKSYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + K+ E + F +P G H
Sbjct: 233 RVPEMNLMAETVTFGDARAND--YYPTTVTLQATGTHFKMNKD-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKIAFVFTYG 398
>gi|423607942|ref|ZP_17583835.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD102]
gi|401239516|gb|EJR45943.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD102]
Length = 458
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 209/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMTNGTGLAQQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus sp. SR1/5]
Length = 462
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/392 (33%), Positives = 206/392 (52%), Gaps = 46/392 (11%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + K F + G+ DAH FI P++ G + + + D ++QV
Sbjct: 31 ITTDSRKV--EKGGLFVPVVGERVDAHRFI-PQVMEAGALATLSERTLEGADHPYIQVG- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L ++ ++A + + +VG+TGSVGK++TK +IA L+ ++ GN+
Sbjct: 87 ----SSLQAVKDIAEFYL-EQLDIPVVGITGSVGKTSTKEVIASVLKE-KYRTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + +IAVLEMG+S GE+ LA++A+P+ V+ N+G HLE+LG
Sbjct: 141 NNELGLPLTVFRLRDEDEIAVLEMGISDFGEMTRLAKIAKPDTCVITNIGTCHLENLGDR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFG------------WRRG 276
+ V +AK EIFQ K VLN DD ++ + ++ VFFG RG
Sbjct: 201 DGVLKAKTEIFQYVKRN--IVLNGDDDKLSTVKEYNSMQPVFFGNGENASVTCENVESRG 258
Query: 277 -----CDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGV 331
CD+ L NG E + IP PG H+ NA AAAAV L+G+
Sbjct: 259 LKGMSCDICLKGKMAENG----------EFQTFHVDIPMPGRHMVSNALAAAAVGRLYGL 308
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
+ Q+ + + PV R ++ IV+D YNANP+S +A++D+L+D G++V
Sbjct: 309 NAEQIKNGIESLEPVSGRFN-MIETDKFMIVDDCYNANPMSMKASLDVLQDGL--GRKVA 365
Query: 392 ILGDMLELGSTERESHEKILSYC----CDACI 419
ILGDM ELG+ E HE + + DACI
Sbjct: 366 ILGDMGELGTDEAALHEGVGVHAGQCRIDACI 397
>gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-28]
gi|407708171|ref|YP_006831756.1| transcriptional regulator crp [Bacillus thuringiensis MC28]
gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-28]
gi|407385856|gb|AFU16357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis MC28]
Length = 458
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/411 (32%), Positives = 207/411 (50%), Gaps = 29/411 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L+ + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLLALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
N VP V FG R D V G + +E E + F IP G H
Sbjct: 232 N-RVPEMNLATETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+ A+A FGV+ ++ L MR E++ SG+ I+NDAYNA+P + A
Sbjct: 288 VYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTIINDAYNASPTAMEA 347
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A L+ + +++V+LGDMLELG E + H ++ A I + G
Sbjct: 348 AFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock4-18]
gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock4-18]
Length = 458
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/411 (32%), Positives = 207/411 (50%), Gaps = 29/411 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L+ + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLLALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVKKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
N VP V FG R D V G + +E E + F IP G H
Sbjct: 232 N-RVPEMNLATETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+ A+A FGV+ ++ L MR E++ SG+ I+NDAYNA+P + A
Sbjct: 288 VYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTIINDAYNASPTAMEA 347
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A L+ + +++V+LGDMLELG E + H ++ A I + G
Sbjct: 348 AFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-29]
gi|423444414|ref|ZP_17421319.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4X2-1]
gi|423537255|ref|ZP_17513673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB2-9]
gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-29]
gi|402411096|gb|EJV43472.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4X2-1]
gi|402459707|gb|EJV91443.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB2-9]
Length = 458
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/411 (32%), Positives = 207/411 (50%), Gaps = 29/411 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L+ + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLLALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ NVG++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNVGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
N VP V FG R D V G + +E E + F IP G H
Sbjct: 232 N-RVPEMNLATETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+ A+A FGV+ ++ L MR E++ SG+ ++NDAYNA+P + A
Sbjct: 288 VYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTVINDAYNASPTAMEA 347
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A L+ + +++V+LGDMLELG E + H ++ A I + G
Sbjct: 348 AFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus m1293]
gi|423577915|ref|ZP_17554034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-D12]
gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus m1293]
gi|401203961|gb|EJR10792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-D12]
Length = 458
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 209/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister microaerophilus UPII 345-E]
gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister microaerophilus UPII 345-E]
Length = 460
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 131/391 (33%), Positives = 206/391 (52%), Gaps = 21/391 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ NEI ++ N +++ G+ + D+R + +N F A+ G+ FD H+F+
Sbjct: 4 FSFNEIKKATNAELVSGKKTGVCFNVSIDSRTI--KENDLFIALKGERFDGHDFVINACK 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
+I + C ++ + V +T + ++A + R RF +V VTG
Sbjct: 62 KGASAVIISDSEC------LEKISEDCTVFLVKDTKKAFEDLAHFNR-MRFDIPVVAVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI+ AL S NV + N NN +G++L+L+ I + D V+EMGM G G+
Sbjct: 115 SNGKTTTKDMIS-ALLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQ 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I EL +A+P I V+ NVG SH+ LGS E++A+AKGE+ Q + VLN DD V
Sbjct: 174 IKELCNIAKPTIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKK 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ R +++G + + +V+ G + E K + G+H +A
Sbjct: 234 MGENFKGRVIYYGLNG--NYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDA 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA + A + GV + ++ LS+FSP R L+ +GIKI++DAYNANP+S A+
Sbjct: 292 LAATSTARILGVDVTKIQRVLSDFSPRAGRQS-LIEINGIKIIDDAYNANPLSMEMALRS 350
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKI 410
LK I+ K +V L DM ELG E + H +I
Sbjct: 351 LKQISAKNKYLV-LADMKELGENEEKFHYEI 380
>gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus 172560W]
gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus 172560W]
Length = 458
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/408 (32%), Positives = 208/408 (50%), Gaps = 25/408 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 234 VPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 351 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
27755]
gi|166027828|gb|EDR46585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dorea
formicigenerans ATCC 27755]
Length = 465
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/371 (33%), Positives = 206/371 (55%), Gaps = 15/371 (4%)
Query: 59 NKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSL 118
K+ F AI G+ +AH+FI P+ KG + VI ++ D ++ VE G +L
Sbjct: 49 EKDYLFIAIDGERVNAHKFI-PDTIKKGAMCVISHEDLGETDFPYILVESTGQ-----AL 102
Query: 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
++ A R+S F +VG+TGSVGK++TK MIA L S V ++ GN+NN G+ +++
Sbjct: 103 LDTAKLYRDS-FDIKVVGITGSVGKTSTKEMIASVL-SQKYCVHKTLGNFNNEWGLPITI 160
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
++ +AVLEMG++ GE+ L+ +A P+I V+ N+G +HLE + E + + K ++
Sbjct: 161 FEMNEKHQVAVLEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQM 220
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVL 297
Q+ K G +LN DD L+ ++ +GV FFG + C + A V + GL G +
Sbjct: 221 IQDMKTGGSILLNGDDDLLRDMGPVKGVDPEFFGLGKNC--QFYATDVESLGLRGSSCTI 278
Query: 298 E-KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR 356
E ++P PG H+ NA A AV G++ A++ + + R+ ++
Sbjct: 279 HLPSGESFDCIVPLPGAHMVQNALAGTAVGYQLGLTPAEIKAGIEGLPSIPGRNN-IIQT 337
Query: 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCD 416
I I++D YNANPIS +A++D+L G++V +LGDM ELG T +E H + ++ D
Sbjct: 338 DKIIILDDCYNANPISMQASLDVLN--MAIGRKVAVLGDMGELGETGKELHYETGAHAGD 395
Query: 417 ACIDLIGLVGD 427
IDL+ +G+
Sbjct: 396 IGIDLVCGIGE 406
>gi|423433900|ref|ZP_17410881.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4X12-1]
gi|401128050|gb|EJQ35754.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4X12-1]
Length = 458
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 204/392 (52%), Gaps = 25/392 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 234 VPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 351 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 382
>gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Roseburia intestinalis M50/1]
Length = 470
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 196/359 (54%), Gaps = 25/359 (6%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F A+ G+ D H+FI P+++ KG + V+ Q ++ +++VE +TL ++ +A
Sbjct: 43 LFIAVKGEKVDGHQFI-PQVFEKGALAVLSEQELSDPAGPYIRVE-----STLGAMKKLA 96
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
Y R S +VG+TGSVGK++TK MIA L S NV ++ GN+NN +G+ L++ I
Sbjct: 97 AYYRRS-LDIKVVGITGSVGKTSTKEMIASVL-SQKYNVLKTEGNFNNEIGLPLTIFKIR 154
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
++AVLEMG+S GE+ LA MA P+I V+ N+G HLE+L + + + +AK E F+
Sbjct: 155 EQHEVAVLEMGISEFGEMHRLAEMAYPDICVITNIGLCHLENLLTRDGILKAKTESFEHL 214
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG-------------CDVRLVAAQVANG 289
VLN DD + + G VF+G + + + A V
Sbjct: 215 TPEGTAVLNGDDDKLCEKKMVNGKPVVFYGIGKEAKPAKTEQGEKYLAEKEVYATDVEPV 274
Query: 290 GL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
GL G + V+ E IP G H NA AA VA G+S+ ++ + + +
Sbjct: 275 GLDGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGG 334
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
RS L+ + G+ I++D YNANP+S +A+ID+L A G+++ +LGDM ELG E+E H
Sbjct: 335 RSN-LIHKGGMTIIDDCYNANPVSMKASIDVLA--AAPGRKIAVLGDMGELGENEQELH 390
>gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus ATCC 10987]
gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus H3081.97]
gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH187]
gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus Q1]
gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST26]
gi|375282336|ref|YP_005102771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus NC7401]
gi|384178161|ref|YP_005563923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar finitimus YBT-020]
gi|402554175|ref|YP_006595446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus FRI-35]
gi|423357188|ref|ZP_17334787.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus IS075]
gi|423376169|ref|ZP_17353483.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus AND1407]
gi|423572347|ref|ZP_17548554.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-A12]
gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus ATCC 10987]
gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus H3081.97]
gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH187]
gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus Q1]
gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST26]
gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar finitimus YBT-020]
gi|358350859|dbj|BAL16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
cereus NC7401]
gi|401075816|gb|EJP84185.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus IS075]
gi|401089160|gb|EJP97332.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus AND1407]
gi|401197714|gb|EJR04642.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-A12]
gi|401795385|gb|AFQ09244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus FRI-35]
Length = 458
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 209/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + ++GVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D V G + +E E + F +P G H
Sbjct: 233 RVPEMNLIAETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 350 HLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|407776390|ref|ZP_11123663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitratireductor pacificus pht-3B]
gi|407301681|gb|EKF20800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitratireductor pacificus pht-3B]
Length = 474
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 136/414 (32%), Positives = 212/414 (51%), Gaps = 19/414 (4%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +W+ E+ ++ G+ L P GI I DTR L FFAI G+ FD H+F +
Sbjct: 2 SALWSFEELVQATGGRPLGQAPNGISGISIDTRTL--EAGDAFFAIQGEQFDGHDFATAA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V V+ G + V + L +L ++ AR +R ++ VTGSV
Sbjct: 60 MAAGASVLVVSEGKLPAL--GRLAVAKLVVPDVLKALEDLGRAAR-ARTKAKVIAVTGSV 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK M+ AL S+G V + ++NN GV L+L + D AV+E+GM+ EI
Sbjct: 117 GKTSTKEMMRQALSSVGA-VHAADRSFNNHWGVPLTLARMPADCDYAVIEIGMNHPDEIR 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVA 258
L +M RP + +V V +HL ++E++ARAKGEIF+ G ++N DD +
Sbjct: 176 PLVKMTRPHVAIVTLVAAAHLGFFKTIEEIARAKGEIFEGVVKGGHALINRDDKRWKTLV 235
Query: 259 NLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
L GV+ V+ FG +VRL+ A++ G + + + E ++ + +PG H+
Sbjct: 236 KLAEDAGVKHVWGFGENARAEVRLMHAEL--GPVSSTMTVRIASEEIEARLGAPGRHMVQ 293
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPISTR 374
NA A A L G L +V ++L +F R L + +++++YNANP S
Sbjct: 294 NALAVLGAAKLAGADLGKVALALGSFRAEAGRGQRHRLRLKDGAFTLIDESYNANPASMA 353
Query: 375 AAIDLL--KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
AA DLL D+ G+R+ +LGDM ELG+ ++ H I +A DL+ L G
Sbjct: 354 AAFDLLGKADVPAGGRRIAVLGDMAELGAHSQKLHADIAGLVAEAGTDLVFLAG 407
>gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus G9842]
gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis IBL 200]
gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar sotto str. T04001]
gi|402562679|ref|YP_006605403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis HD-771]
gi|423565416|ref|ZP_17541692.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-A1]
gi|434378872|ref|YP_006613516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis HD-789]
gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus G9842]
gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis IBL 200]
gi|401193995|gb|EJR00993.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-A1]
gi|401791331|gb|AFQ17370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis HD-771]
gi|401877429|gb|AFQ29596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis HD-789]
Length = 458
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 26/385 (6%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 18 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 71 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 122
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 123 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 240
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
V FG R D + G ++ E + F +P G H N A+ A+
Sbjct: 241 AETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYNTLASMAI 297
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
AT FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA L+ +
Sbjct: 298 ATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 357
Query: 386 NGKRVVILGDMLELGSTERESHEKI 410
K++V+LGDMLELG+ E + H ++
Sbjct: 358 FTKKIVVLGDMLELGNQEVQFHYEV 382
>gi|403379025|ref|ZP_10921082.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus sp. JC66]
Length = 460
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 205/413 (49%), Gaps = 39/413 (9%)
Query: 28 TINEIAESVNGKILKWGPPGI--------ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
T+ +I GK++ PG+ + TD+R A F + G F+ H F++
Sbjct: 5 TLEQIEVMAEGKLV----PGVPRDKLISGVSTDSR--AITTGCLFVPLIGDVFNGHSFVT 58
Query: 80 PELYGKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
E + KG + Q D + VE N L +L +A RN + + ++ +
Sbjct: 59 -EAFAKGAAASLWQQDQGEPPADMPVIIVE-----NCLTALQKLATAYRN-QLTARVIAI 111
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+TTK M A A+ S V ++ GN NN +G+ L+L+ +D + ++AVLEMGMSG+
Sbjct: 112 TGSNGKTTTKDMTA-AILSTTYKVHKTEGNLNNHIGLPLTLLQMDESTEMAVLEMGMSGR 170
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L +A+PE ++ N+GD+HL LGS E++ARAK EI K N DDPL+
Sbjct: 171 GEIELLTGLAQPEAAIITNIGDAHLLQLGSREEIARAKCEILSGLKEDGFFAYNGDDPLI 230
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVK--------FVIP 309
N F +R G + N + ++L+ E + + F +P
Sbjct: 231 DNTYPSMPQPNHFLRYRFGSGPQ-------NDLYPLAIMLDHEGQQFRINWPDAPGFSLP 283
Query: 310 SPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369
G H INA A AV GV + L N MR E + + G ++NDAYNAN
Sbjct: 284 LLGEHNVINALGAIAVCKYMGVQDKDIVEGLRNLKVSAMRIESIKASCGALLLNDAYNAN 343
Query: 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
P S +AAI L+ + ++V+LGDMLELG E E H +I A ID +
Sbjct: 344 PSSMKAAIQLVHTLKGYHTKMVVLGDMLELGERELEFHLEIGRMLDPAQIDYV 396
>gi|423480371|ref|ZP_17457061.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6X1-2]
gi|401148763|gb|EJQ56248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6X1-2]
Length = 458
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 207/411 (50%), Gaps = 29/411 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDRAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L + A+N R +VGVT
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE----------DTLAALQMLAKNYRDQLDVKVVGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSQG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
N VP V FG R D + G ++ E + F +P G H
Sbjct: 232 N-RVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETLSFYLPVLGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + A
Sbjct: 288 VYNTLASMAIAKHFGVTWEEMKTGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEA 347
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 348 AFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|423450243|ref|ZP_17427121.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5O-1]
gi|401126251|gb|EJQ33995.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5O-1]
Length = 458
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 207/411 (50%), Gaps = 29/411 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L+ + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLLALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
N VP V FG R D + G ++ EK + F IP G H
Sbjct: 232 N-RVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNREKN---ISFYIPVLGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+ A+A FGV+ ++ L MR E++ SG+ ++NDAYNA+P + A
Sbjct: 288 VYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTVINDAYNASPTAMEA 347
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A L+ + +++V+LGDMLELG E + H ++ A I + G
Sbjct: 348 AFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|423415879|ref|ZP_17392999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3O-2]
gi|423428327|ref|ZP_17405331.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4O-1]
gi|423507748|ref|ZP_17484315.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HD73]
gi|449086890|ref|YP_007419331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|401094717|gb|EJQ02790.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3O-2]
gi|401126649|gb|EJQ34385.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG4O-1]
gi|402443147|gb|EJV75060.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HD73]
gi|449020647|gb|AGE75810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 458
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 204/392 (52%), Gaps = 25/392 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 234 VPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 351 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 382
>gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|384184308|ref|YP_005570204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis serovar chinensis CT-43]
gi|410672596|ref|YP_006924967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Bacillus thuringiensis Bt407]
gi|423387288|ref|ZP_17364542.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1X1-2]
gi|423526473|ref|ZP_17502918.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB1-1]
gi|452196602|ref|YP_007476683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis serovar chinensis CT-43]
gi|401629251|gb|EJS47076.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1X1-2]
gi|402456267|gb|EJV88043.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB1-1]
gi|409171725|gb|AFV16030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Bacillus thuringiensis Bt407]
gi|452101995|gb|AGF98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 458
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 26/385 (6%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 18 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 71 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 122
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 123 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 240
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
V FG R D + G ++ E + F +P G H N A+ A+
Sbjct: 241 AETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYNTLASMAI 297
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
AT FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA L+ +
Sbjct: 298 ATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 357
Query: 386 NGKRVVILGDMLELGSTERESHEKI 410
K++V+LGDMLELG+ E + H ++
Sbjct: 358 FTKKIVVLGDMLELGNQEVQFHYEV 382
>gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis Bt407]
gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis Bt407]
gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar berliner ATCC 10792]
Length = 454
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 26/385 (6%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 14 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 66
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 67 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 118
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 119 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 236
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
V FG R D + G ++ E + F +P G H N A+ A+
Sbjct: 237 AETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYNTLASMAI 293
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
AT FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA L+ +
Sbjct: 294 ATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 353
Query: 386 NGKRVVILGDMLELGSTERESHEKI 410
K++V+LGDMLELG+ E + H ++
Sbjct: 354 FTKKIVVLGDMLELGNQEVQFHYEV 378
>gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylotenera versatilis 301]
gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylotenera versatilis 301]
Length = 464
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 136/386 (35%), Positives = 206/386 (53%), Gaps = 25/386 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + K Q F A+ G +FD H F + + +I ++ N V
Sbjct: 25 VGTDSR--SVTKGQLFVALKGDNFDGHSFAAQAIAQGAAAVLISDRTLNVQPAILVD--- 79
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN---VFQSY 165
+T SL +A Y R S+F L VTGS GK+T K M+A L + V +
Sbjct: 80 ----DTCQSLGELAAYWR-SKFDIPLAAVTGSNGKTTVKEMLASILRAACDQPDAVLATV 134
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +G+ L+L+ ++ AV EMGM+ GEI L+R+ +P + ++ N G++H+ L
Sbjct: 135 GNLNNHIGLPLTLLKLNARHRYAVAEMGMNHTGEISYLSRIGKPTVALINNAGNAHIGEL 194
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADD---PLVANLTVPRGVRKVF-FGWRRGCDVRL 281
GS E +ARAKGEIF+ V+NADD PL +L G RK+ FG + D
Sbjct: 195 GSFEAIARAKGEIFEGLAADATAVINADDVFAPLWLDLA---GQRKIMTFGLKNKAD--- 248
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
V AQ + + + VK +P+PGLH +NA AA + A G SL V I L
Sbjct: 249 VTAQYQLHASASDIEITTPQGAVKVSLPTPGLHNVMNALAATSTALAMGASLQAVSIGLE 308
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
N++ V+ R + +G +++D YNANP+S + AID+L +A +G+++++LGDM ELG
Sbjct: 309 NYAGVKGRLQQKAGLNGALVIDDTYNANPMSMKVAIDVL--MAMSGEKILVLGDMGELGD 366
Query: 402 TERESHEKILSYCCDACIDLIGLVGD 427
E H +I SY + + + ++GD
Sbjct: 367 NAAEMHAEIGSYAKASGLKSLFVLGD 392
>gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis IBL 4222]
gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis IBL 4222]
Length = 454
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 26/385 (6%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 14 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 66
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 67 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 118
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 119 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 236
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
V FG R D + G ++ E + F +P G H N A+ A+
Sbjct: 237 AETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYNTLASMAI 293
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
AT FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA L+ +
Sbjct: 294 ATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 353
Query: 386 NGKRVVILGDMLELGSTERESHEKI 410
K++V+LGDMLELG+ E + H ++
Sbjct: 354 FTKKIVVLGDMLELGNQEVQFHYEV 378
>gi|423364240|ref|ZP_17341733.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD022]
gi|401073131|gb|EJP81570.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD022]
Length = 458
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 26/385 (6%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 18 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 70
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 71 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 122
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 123 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 240
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
V FG R D + G ++ E + F +P G H N A+ A+
Sbjct: 241 AETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYNTLASMAI 297
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
AT FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA L+ +
Sbjct: 298 ATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 357
Query: 386 NGKRVVILGDMLELGSTERESHEKI 410
K++V+LGDMLELG+ E + H ++
Sbjct: 358 FTKKIVVLGDMLELGNQEVQFHYEV 382
>gi|374602397|ref|ZP_09675390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus dendritiformis C454]
gi|374391999|gb|EHQ63328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus dendritiformis C454]
Length = 474
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 209/387 (54%), Gaps = 21/387 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ TD+R + F +TG+ FD H ++ L G G + ++ + V
Sbjct: 30 VFTDSRSVL--TGGLFVPLTGERFDGHAYVEETLRA-GAAGALWQADRALPGASAPLIIV 86
Query: 107 EGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +T +L +A Y + +V VTGS GK+TTK ++A L S V ++
Sbjct: 87 E-----DTYAALQRLAAAYLAEGQVK--VVAVTGSNGKTTTKDLVASVL-SQRYRVHKTD 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ + R +IAVLEMGMSG+GEI L+++ARP++ V+ N+GD+HL L
Sbjct: 139 GNFNNHIGLPLTVLSMPRETEIAVLEMGMSGRGEIELLSQLARPDVAVITNIGDAHLLQL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRG-VRKVFFGWRRGCDVR 280
GS E++ARAK EI + G + V + D+PLV +L + P G +R + FG C++R
Sbjct: 199 GSREEIARAKLEITAGLRDGGLLVCHGDEPLV-DLALSEREPGGRIRLLRFGLGERCELR 257
Query: 281 LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
L G+ V + F IP G H +NA AA AV FG++ Q+ L
Sbjct: 258 LSRMSGDGSGMAFAVPSAGGQGESVFHIPLLGQHNVMNAMAALAVGRQFGLTDEQIAAGL 317
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
+ MR E V+ G ++NDAYNA+P S RAA+ +L D+ G+R+ +L DMLELG
Sbjct: 318 AGARISGMRFERHVTPGGWIVLNDAYNASPTSMRAALSVLADMK-GGRRIAVLADMLELG 376
Query: 401 STERESHEKILSYCCDACIDLIGLVGD 427
E H +I + ID++ G+
Sbjct: 377 PQEAALHFEIGAELTPDQIDVVLTYGE 403
>gi|423422456|ref|ZP_17399487.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3X2-2]
gi|401119846|gb|EJQ27652.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG3X2-2]
Length = 458
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 204/392 (52%), Gaps = 25/392 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 234 VPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 351 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 382
>gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Roseburia intestinalis L1-82]
gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Roseburia intestinalis L1-82]
gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Roseburia intestinalis XB6B4]
Length = 470
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 195/359 (54%), Gaps = 25/359 (6%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F A+ G+ D H+FI P+++ KG + V+ Q + +++VE +TL ++ +A
Sbjct: 43 LFIAVKGEKVDGHQFI-PQVFEKGALAVLSEQELSEPAGPYIRVE-----STLGAMKKLA 96
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
Y R S +VG+TGSVGK++TK MIA L S NV ++ GN+NN +G+ L++ I
Sbjct: 97 AYYRRS-LDIKVVGITGSVGKTSTKEMIASVL-SQKYNVLKTEGNFNNEIGLPLTIFKIR 154
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
++AVLEMG+S GE+ LA MA P+I V+ N+G HLE+L + + + +AK E F+
Sbjct: 155 EQHEVAVLEMGISEFGEMHRLAEMAYPDICVITNIGLCHLENLLTRDGILKAKTESFEHL 214
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV-------------RLVAAQVANG 289
VLN DD + + G VF+G + + + A V
Sbjct: 215 TPEGTAVLNGDDDKLCEKKMVNGKPVVFYGIGKEAKLAKTEQGEKYLAEKEVYATDVEPV 274
Query: 290 GL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
GL G + V+ E IP G H NA AA VA G+S+ ++ + + +
Sbjct: 275 GLDGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGG 334
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
RS L+ + G+ I++D YNANP+S +A+ID+L A G+++ +LGDM ELG E+E H
Sbjct: 335 RSN-LIHKGGMTIIDDCYNANPVSMKASIDVLA--AAPGRKIAVLGDMGELGENEQELH 390
>gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Acetohalobium
arabaticum DSM 5501]
gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Acetohalobium
arabaticum DSM 5501]
Length = 465
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 219/410 (53%), Gaps = 17/410 (4%)
Query: 26 IWTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I T+++ ++G+++ I D+R + N + FFAI G FD H+F+ L
Sbjct: 3 IMTVDDFISEIDGRLISGNLKEEIKQISIDSRTI--NSGELFFAIKGDRFDGHDFVMDAL 60
Query: 83 YGKGCVGVIGNQVC---NNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ V+ N+ NN D V + G +T +L ++A Y R S F ++G+TG
Sbjct: 61 RAEAVGAVVDNEQVERYNNVDSDEVII---GVEDTTRALQDLAEYYR-SLFDIPVIGITG 116
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK ++A LE+ ++ GN+NN G+ L+L +D + V+E+ M G G+
Sbjct: 117 STGKTTTKDLVASVLET-KFKTLKTEGNYNNEFGLPLTLFRLDSTYEAVVVELAMRGLGD 175
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L ++A+P+I VV NVG +HLE LGS E++A+AK E+ + +LN DD V
Sbjct: 176 IKTLCQIAQPQIGVVTNVGLTHLECLGSQENIAKAKSELVENLPPTGTAILNGDDKYVRQ 235
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVAN-GGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+ +++G G +++ A++V N G G++ + ++ E +P G + N
Sbjct: 236 MADETKAEILYYGRESGNNLQ--ASRVDNLGEAGLKFRVSRQLEEFTIDLPLAGEYNVYN 293
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA V G+++ ++ L+ MR E+ + I ++NDAYNANP S A +D
Sbjct: 294 ALAAVGVGLKLGLNINEIQQGLAEPDLTGMRGEIKELKDDITLINDAYNANPTSMEAGLD 353
Query: 379 LLKDIACN-GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
LL DI + G + +LGDMLELGS E+H +I + ID + VGD
Sbjct: 354 LLVDIGTDKGGLIAVLGDMLELGSAAEEAHRQIGKKVINKKIDYLLTVGD 403
>gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar israelensis ATCC 35646]
Length = 468
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 202/385 (52%), Gaps = 26/385 (6%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
+AE G I++ + DTR + K + I G+ FD H F+ + +
Sbjct: 28 LAEQYEGTIIQG-----VSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVENGAVATLW 80
Query: 92 GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
V N N FV+ +TL++L +A R+ + +VGVTGS GK++TK
Sbjct: 81 MKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSNGKTSTKD 132
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++AR
Sbjct: 133 IVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLAR 191
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---G 265
P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N VP
Sbjct: 192 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-RVPEMNLA 250
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
V FG R D + G ++ E + F +P G H N A+ A+
Sbjct: 251 AETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYNTLASMAI 307
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
AT FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA L+ +
Sbjct: 308 ATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 367
Query: 386 NGKRVVILGDMLELGSTERESHEKI 410
K++V+LGDMLELG+ E + H ++
Sbjct: 368 FTKKIVVLGDMLELGNQEVQFHYEV 392
>gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock1-3]
gi|423381729|ref|ZP_17359012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1O-2]
gi|423467854|ref|ZP_17444622.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6O-1]
gi|423542982|ref|ZP_17519370.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB4-10]
gi|423543711|ref|ZP_17520069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB5-5]
gi|423626834|ref|ZP_17602609.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD148]
gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock1-3]
gi|401167097|gb|EJQ74391.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB4-10]
gi|401186993|gb|EJQ94069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB5-5]
gi|401250189|gb|EJR56491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD148]
gi|401628656|gb|EJS46490.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG1O-2]
gi|402412291|gb|EJV44651.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6O-1]
Length = 458
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 207/411 (50%), Gaps = 29/411 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L+ + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLLALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
N VP V FG R D V G + +E E + F IP G H
Sbjct: 232 N-RVPEMNLATETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+ A+A FGV+ ++ L MR E++ SG+ ++NDAYNA+P + A
Sbjct: 288 VYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTVINDAYNASPTAMEA 347
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A L+ + +++V+LGDMLELG E + H ++ A I + G
Sbjct: 348 AFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST24]
gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST24]
Length = 468
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 204/392 (52%), Gaps = 25/392 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 16 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 73
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 74 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 125
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 126 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 184
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 185 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 243
Query: 262 VP---RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 244 VPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 300
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 301 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 360
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 361 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 392
>gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. 168]
gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. JH642]
gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. SMY]
gi|402774702|ref|YP_006628646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis QB928]
gi|418034443|ref|ZP_12672915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. SC-8]
gi|351468696|gb|EHA28905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. SC-8]
gi|402479887|gb|AFQ56396.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop
imelate-D-alanyl-D-alanine [Bacillus subtilis QB928]
Length = 481
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 206/400 (51%), Gaps = 32/400 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 29 TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHSFVE-QAF 85
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 86 EAGVAAVL-------WDRSVPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 137
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 138 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 196
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 197 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 256
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ +G D +L V+ G ++ F IP G H +NA
Sbjct: 257 ---AYSCQTKTYGTGTHNDYQL--QDVSQSEEGTHFTIKGIENT--FFIPILGKHNVMNA 309
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A FG++ LS MR EL+ + SG+ I+NDAYNA+P S +AAI L
Sbjct: 310 MAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQL 369
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419
+ + GK++++LGDMLELG E H++ C A I
Sbjct: 370 TESLEGYGKKMLVLGDMLELGDLEETFHKE-----CGAVI 404
>gi|430757090|ref|YP_007210800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. subtilis str. BSP1]
gi|430021610|gb|AGA22216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus subtilis subsp. subtilis str. BSP1]
Length = 457
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 207/400 (51%), Gaps = 32/400 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE VNG + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 5 TVKNIAEMVNGTLTNPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHTFVE-QAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 62 EAGVAAVL-------WDRSEPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 114 SNGKTTTKDMIHAVLGT-KYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 173 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 232
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ +G D +L + G + + + F IP G H +NA
Sbjct: 233 ---AYSCQTKTYGTGAHNDYQLQDVSQSEEGTHFTI----KGIINTFFIPILGKHNVMNA 285
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A FG++ LS MR EL+ + SG+ I+NDAYNA+P S +AAI L
Sbjct: 286 MAAIAAGAYFGITPEGAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQL 345
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419
+ + GK++++LGDMLELG E H++ C A I
Sbjct: 346 TESLEGYGKKMLVLGDMLELGDLEETFHKE-----CGAVI 380
>gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
subtilis subsp. subtilis str. 168]
gi|452916533|ref|ZP_21965156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Bacillus subtilis MB73/2]
gi|3024202|sp|P96613.1|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
AltName: Full=UDP-MurNAc-pentapeptide synthetase
gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis]
gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. subtilis str. 168]
gi|452114673|gb|EME05072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Bacillus subtilis MB73/2]
Length = 457
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 206/400 (51%), Gaps = 32/400 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 5 TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHSFVE-QAF 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 62 EAGVAAVL-------WDRSVPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 114 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 173 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 232
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ +G D +L V+ G ++ F IP G H +NA
Sbjct: 233 ---AYSCQTKTYGTGTHNDYQL--QDVSQSEEGTHFTIKGIENT--FFIPILGKHNVMNA 285
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A FG++ LS MR EL+ + SG+ I+NDAYNA+P S +AAI L
Sbjct: 286 MAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQL 345
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419
+ + GK++++LGDMLELG E H++ C A I
Sbjct: 346 TESLEGYGKKMLVLGDMLELGDLEETFHKE-----CGAVI 380
>gi|449093156|ref|YP_007425647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis XF-1]
gi|449027071|gb|AGE62310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis XF-1]
Length = 471
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 140/407 (34%), Positives = 210/407 (51%), Gaps = 27/407 (6%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 19 TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHTFVE-QAF 75
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 76 EAGVAAVL-------WDRSEPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 127
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 128 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 186
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 187 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 246
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ +G D +L V+ G ++ + F IP G H +NA
Sbjct: 247 ---AYSCQTKTYGTGAHNDYQL--QDVSQSEEGTHFTIKGIEQT--FFIPILGKHNVMNA 299
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A FG++ LS+ MR EL+ + SG+ I+NDAYNA+P S +AAI L
Sbjct: 300 IAAIAAGAYFGITPEGAAKGLSSLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQL 359
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ + GK++++LGDMLELG E H++ + ID + G
Sbjct: 360 TESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPEKIDRVFTYG 406
>gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 458
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 132/408 (32%), Positives = 208/408 (50%), Gaps = 25/408 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--KKGNLYVPIQGERFDGHGFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 234 VPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 351 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus B4264]
gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH676]
gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock1-15]
gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-Cer4]
gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus m1550]
gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis BMB171]
gi|423632142|ref|ZP_17607888.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD154]
gi|423646357|ref|ZP_17621927.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD169]
gi|423653165|ref|ZP_17628464.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD200]
gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus B4264]
gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus m1550]
gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-Cer4]
gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock1-15]
gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH676]
gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis BMB171]
gi|401262037|gb|EJR68184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD154]
gi|401287655|gb|EJR93432.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD169]
gi|401302692|gb|EJS08264.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD200]
Length = 458
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 204/392 (52%), Gaps = 25/392 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VP---RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 234 VPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 351 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 382
>gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
cereus ATCC 14579]
gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
cereus ATCC 14579]
Length = 454
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 204/392 (52%), Gaps = 25/392 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 2 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 59
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 60 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 111
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 112 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 170
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 171 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 229
Query: 262 VP---RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 230 VPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 286
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 287 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 346
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 347 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 378
>gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
gi|336431478|ref|ZP_08611327.1| hypothetical protein HMPREF0991_00446 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153795608|gb|EDN78028.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus gnavus ATCC 29149]
gi|336013780|gb|EGN43652.1| hypothetical protein HMPREF0991_00446 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 456
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 198/368 (53%), Gaps = 14/368 (3%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F AI G D H FI P+ G + + + N ++ V + +L
Sbjct: 40 KDCLFIAIRGARVDGHMFI-PQTIRDGALCALSEKRIENASYPYILV-----TSCEQALK 93
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
++A + R S + +VGVTGSVGK++TK MIA L NV ++ GN+NN +G+ L++
Sbjct: 94 DIAEHYRKS-LNLKVVGVTGSVGKTSTKEMIASVLGE-KYNVLKTAGNFNNEIGLPLTIF 151
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
I ++AVLE+G+S GE+ LA++ARP+I V+ N+G +HLE L S + + +AK EIF
Sbjct: 152 NIREEHEVAVLELGISNFGEMERLAKIARPDICVITNIGVAHLEHLKSRDGILKAKTEIF 211
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLE 298
+LN DD ++ + G++ VFFG D A QV + GL G V
Sbjct: 212 LYMNPNGSIILNGDDDKLSTVHPANGIQPVFFGLDDSRD--FYADQVESCGLRGTNAVFH 269
Query: 299 KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG 358
I PG H+ +NA A A G++ ++ + P+ R+ L+ + S
Sbjct: 270 TPNSTFSAHISIPGEHMVLNALAGIAAGYALGMNDEEIKAGIEALVPLAGRNNLIETDS- 328
Query: 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDAC 418
+ I++D YNANP ST+A++D+L + +++ +LGDM ELG TE++ H ++ Y
Sbjct: 329 LTIIDDCYNANPASTKASLDVLA--KADTRQIAVLGDMFELGPTEKQMHYEVGKYAAGLG 386
Query: 419 IDLIGLVG 426
ID++ +G
Sbjct: 387 IDILVCIG 394
>gi|423578633|ref|ZP_17554744.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD014]
gi|423638227|ref|ZP_17613879.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD156]
gi|401220491|gb|EJR27124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD014]
gi|401271730|gb|EJR77735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD156]
Length = 458
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 132/408 (32%), Positives = 208/408 (50%), Gaps = 25/408 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHGFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 234 VPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG E + H ++ A I + G
Sbjct: 351 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|373106178|ref|ZP_09520481.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Stomatobaculum longum]
gi|371652553|gb|EHO17961.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Stomatobaculum longum]
Length = 471
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 211/417 (50%), Gaps = 18/417 (4%)
Query: 29 INEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+EI E+ G++L + I D+R + + F + G+ DAH F+ P +
Sbjct: 6 IDEIREATGGELLCGREEEKISYISIDSRDV--KEGTLFVPLVGEKVDAHRFLEP-VIAA 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA--RNSRFSGVLVGVTGSVGK 143
G V + G + ++L+ + A SR S L+GVTGSVGK
Sbjct: 63 GAKAVFTAEALTEAQHEAAAEAGTAVIRVADTLIALQALAGWLRSRLSLPLIGVTGSVGK 122
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TT+ MIA AL S VF++ N N+++GV L+L+ I+ +I V+EMG+S GE+ +
Sbjct: 123 TTTREMIAAAL-SAKYRVFKTKANHNSQIGVPLTLLDIEDE-EIGVIEMGISRPGEMHII 180
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ + RP VV N+G +HL LGS E++ K +I + + NADD ++ + V
Sbjct: 181 SELVRPAAAVVTNIGTAHLMELGSRENIRDEKLKIQDGMQKDALLFRNADDAMLLSGQVR 240
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
G+ +G G D R + NG + +R VK + PG H +NA AA
Sbjct: 241 DGITARTYGLAEGADCRAENVGLVNGCAEFTANIRGKRVAVKLGV--PGEHQVLNALAAL 298
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
VA +GV LA L F + R ++ R G+ +++D+YNA+P S RAA+ +L ++
Sbjct: 299 GVAEAYGVPLAGAAAELEKFKGYRHRQQIF-ERDGVLVIDDSYNASPASMRAALSILHEM 357
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDA----CIDLIGLVGDRVVVQCKWR 436
N +R+ +LGDM ELG E+E H +I + A C+ +G + + C+ R
Sbjct: 358 K-NRRRIAVLGDMKELGEAEKELHREIGAELAAAKGAECLYTLGDLAAELAAACRER 413
>gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
maris DSM 8797]
gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
maris DSM 8797]
Length = 470
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 202/375 (53%), Gaps = 17/375 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCNNWDKGFVQVE 107
I D+R ++ FFAI G+ FD H+F++ L G V +V + + ++V+
Sbjct: 30 ISIDSR--TAKEDDLFFAIQGKRFDGHQFVNQALTRGAAACVVKRGEVTDPGSQLLLEVD 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+VN ++L+ A + R + S ++GVTGSVGK+TT+SMI AL S + QS N
Sbjct: 88 ---DVN--HALMQFARWYREQQ-SARVIGVTGSVGKTTTRSMIYTALSSCLTGI-QSPAN 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN GV LS+ GI+ + AVLE+ S GEI ELA +A P+I V+ +G SHLE G+
Sbjct: 141 FNNEFGVPLSIAGIESSHQFAVLELAASHVGEIRELAAIALPQIGVITAIGHSHLEHFGT 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
L+ +A KGE+F++ + ++ DDP L RKV G D++ V+ +
Sbjct: 201 LQQIAETKGELFEQLPATGLAIVCGDDPFADCLASRTTARKVRIGLGENNDLQAVSIEQD 260
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
G+ +V + ++++P G H A AA AVA G+S V SL N+S V
Sbjct: 261 QQGISFRVNGQ------QYLLPVVGRHFVNAALAAIAVARELGISEQDVAESLRNYSTVP 314
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R + +++D YNA+P S RAA +L D GKR+++LGDMLELG H
Sbjct: 315 GRCHQM-QIGDWTVIDDTYNASPDSMRAACQVLHDHVGTGKRIMVLGDMLELGPETERYH 373
Query: 408 EKILSYCCDACIDLI 422
++ C A +DL+
Sbjct: 374 RELGILVCQAGVDLL 388
>gi|346308126|ref|ZP_08850252.1| hypothetical protein HMPREF9457_01961 [Dorea formicigenerans
4_6_53AFAA]
gi|345903923|gb|EGX73674.1| hypothetical protein HMPREF9457_01961 [Dorea formicigenerans
4_6_53AFAA]
Length = 455
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 15/370 (4%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F AI G+ +AH+FI P+ KG + VI ++ D ++ VE G +L+
Sbjct: 40 KDYLFIAIDGERVNAHKFI-PDTIKKGAMCVISHEDLGETDFPYILVESTGQ-----ALL 93
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
+ A R+S F +VG+TGSVGK++TK MIA L S V ++ GN+NN G+ +++
Sbjct: 94 DTAKLYRDS-FDIKVVGITGSVGKTSTKEMIASVL-SQKYCVHKTLGNFNNEWGLPITIF 151
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
++ +AVLEMG++ GE+ L+ +A P+I V+ N+G +HLE + E + + K ++
Sbjct: 152 EMNEKHQVAVLEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMI 211
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLE 298
Q+ K G +LN DD L+ ++ +GV FFG + C + A V GL G +
Sbjct: 212 QDMKTGGSILLNGDDDLLRDMGPVKGVDPEFFGLGKNC--QFYATDVEPLGLRGSSCTIH 269
Query: 299 -KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357
E ++P PG H+ NA A AV G++ A++ + + R+ ++
Sbjct: 270 LPSGESFDCIVPLPGAHMVQNALAGTAVGYQLGLTPAEIKAGIEGLPSIPGRNN-IIQTD 328
Query: 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDA 417
I I++D YNANP+S +A++D+L G++V +LGDM ELG T +E H + ++ D
Sbjct: 329 KIIILDDCYNANPVSMQASLDVLN--MAIGRKVAVLGDMGELGETGKELHYETGAHAGDI 386
Query: 418 CIDLIGLVGD 427
IDL+ +G+
Sbjct: 387 GIDLVCGIGE 396
>gi|423644959|ref|ZP_17620575.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD166]
gi|401268293|gb|EJR74343.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD166]
Length = 458
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 204/392 (52%), Gaps = 25/392 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VP---RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 234 VPGMNLAAETVTFGDARANDYYPTTVTLQATGTYFKM---NRDENISFYLPVLGKHNVYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 351 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 382
>gi|383753244|ref|YP_005432147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365296|dbj|BAL82124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 455
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 211/391 (53%), Gaps = 22/391 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++T++EI ++++ KI K + TDTR ++ F A+ G+ F+ +F + E
Sbjct: 1 MFTLDEIVKAISAKIYKEEKKDFSAVVTDTRKISAG--VLFVALKGERFNGEDF-AAEAL 57
Query: 84 GKGCVGVIGNQVC--NNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG GV+ ++ C DK +QV +TL + +A R+ +V +T
Sbjct: 58 EKGAAGVVVSENCAQEQLDKCQGTVLQV-----ADTLTAYQLIAKAWRDKFPQIPVVAIT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK + A L + G +V ++ N+NN +G+ L+L+G+ AV+E+GM G
Sbjct: 113 GSNGKTTTKDLTAAVLSAKG-DVLKTQANFNNEIGLPLTLLGLKAEHKAAVVEIGMRGFH 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I LA +A P+I +V NVG++H+E LGSLE++A+AK E+ + G +LNAD+ VA
Sbjct: 172 QIDALAPIASPQIGIVTNVGETHMELLGSLENIAKAKQELVEAIPAGGTVILNADNKYVA 231
Query: 259 NL--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+ GV+ + FG + DV+ A V ER ++ + G H
Sbjct: 232 GMGSAAKEGVKVMTFGIEKDADVKGEALHTEGNVTKFMVTYANERH--EYEVNMVGRHNV 289
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
N AA A G++ +V L N +MR EL + +VNDAYNA+P+S AA
Sbjct: 290 YNTLAAIAAGFAMGLTPDEVRRGLGNLEATKMRFELQQVKE-WNVVNDAYNASPMSMTAA 348
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESH 407
I+ L ++A G+++ +LGDMLELGS E+H
Sbjct: 349 INTLSELA-KGRKIAVLGDMLELGSVSEEAH 378
>gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Tepidanaerobacter acetatoxydans Re1]
gi|438002201|ref|YP_007271944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Tepidanaerobacter acetatoxydans Re1]
gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Tepidanaerobacter acetatoxydans Re1]
gi|432178995|emb|CCP25968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Tepidanaerobacter acetatoxydans Re1]
Length = 462
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 199/379 (52%), Gaps = 29/379 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + NK + F +TG +FD H+FI + KG ++ C+ + V
Sbjct: 29 VSTDSRTI--NKGELFVPLTGPNFDGHDFIE-RAFEKGAAAIL----CDKNKRSKVDNLP 81
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
N+ N ++L++++ Y R F V +TGSVGK+TTK M A L ++ V ++
Sbjct: 82 IKNIIFVDNPQSALLSLSAYYRR-LFDIPFVAITGSVGKTTTKEMTAEIL-NMRFKVLKT 139
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +G+ L++ ++ + V+E+GMS GEI +A + RP+I V+ N+G +H+E
Sbjct: 140 SGNLNNEIGLPLTIFRLEEGYQVGVVELGMSALGEISRMASVVRPKIAVITNIGIAHIEK 199
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG-CDVRLVA 283
LGS +++ARAK EI + D+ VLN D + + + VFFG RG R +
Sbjct: 200 LGSKQNIARAKMEILEPLGENDLAVLNGDCQELWDARKTIVPKTVFFGQERGDIKARNIK 259
Query: 284 AQVANGGLGVQVVLEKEREM------VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337
+ N E E ++ + F PG+H NA AA AV G++ ++
Sbjct: 260 SNSTN---------ELEFDIYGCYGEMTFKALLPGIHNVNNALAAIAVGFEMGLTKEEIQ 310
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
N +MR + S G I++DAYNANP S ++A+D L+ + KR VILGDML
Sbjct: 311 QGFLNLKLPEMRLQFKKSYFGADIIDDAYNANPDSMKSALDFLQQYSYGKKRAVILGDML 370
Query: 398 ELGSTERESHEKILSYCCD 416
ELG ++H +I Y +
Sbjct: 371 ELGDLSEKAHFEIGKYAAE 389
>gi|347751907|ref|YP_004859472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 36D1]
gi|347584425|gb|AEP00692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 36D1]
Length = 458
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 129/398 (32%), Positives = 205/398 (51%), Gaps = 29/398 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+C D+R + K + +TG+H D H+++ + + +G + W K
Sbjct: 31 VCIDSRKI--EKGNLYVPLTGRHADGHQYVE-DAFRRGAAASL-------WQKDVPNPPA 80
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
N + +T SL ++ RN+ +VG+TGS GK+TTK M+A L S V ++
Sbjct: 81 NVPLLIVEDTEKSLQELSKSYRNA-LRAKVVGITGSNGKTTTKDMVASVL-SEKFKVQKT 138
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN GV L+L+ +D +IAV+EMGMS KGEI L +ARP++ ++ N+G++H+++
Sbjct: 139 EGNFNNHQGVPLTLLSLDEDTEIAVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQN 198
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRGCDVR 280
LGS E +A AK EI + + + D+PL V N+T G+R FG G D+
Sbjct: 199 LGSREAIADAKLEITEGLPENGLLIYMGDEPLLQERVPNIT---GIRTKTFGKGHGNDLY 255
Query: 281 LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
V + G + + + F +P G + IN+ AA FG+ ++ L
Sbjct: 256 PVEWKQETSGSTFRTNASGD---IDFYLPVLGEYNVINSLAAILAGREFGMPFEEIRAGL 312
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
MR E+ +G KI+NDAYNA+P S RAAI L++ G+++++LGDMLELG
Sbjct: 313 GKTRLSAMRMEMADGINGSKIINDAYNASPTSMRAAIRLVEQFEGTGRKILVLGDMLELG 372
Query: 401 STERESHEKILSYCCDACIDLI---GLVGDRVVVQCKW 435
E H ++ ID + G +G + C +
Sbjct: 373 EKEAAFHREVGRDLNPEKIDFVFTYGKLGRLIAEACDF 410
>gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
17244]
gi|169259342|gb|EDS73308.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerofustis stercorihominis DSM 17244]
Length = 457
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 213/410 (51%), Gaps = 20/410 (4%)
Query: 29 INEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I+ +++ +NGKI++WG + D+R+ K FFA+ G + H+F + Y
Sbjct: 6 IDTLSKMINGKIIRWGKENEVSGVVIDSRL--AKKRSVFFALDGTEMNGHDF-ALSAYKN 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G V+ + D ++VE +TL +L +MA ++ RF V +TGS GK+T
Sbjct: 63 GACAVVVKREIEGADCFQIKVE-----DTLKALYDMAKSYKD-RFDIPFVALTGSAGKTT 116
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK M A L S ++ GN+N+ GV L+L +++ +IAV+EMGM+ KGEI +++
Sbjct: 117 TKDMTASVL-SKKYKTMKTIGNFNSTTGVPLTLFNLEQGDEIAVVEMGMNHKGEIEKISE 175
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR- 264
+ P++ ++ NVG +H+E+LGS E++ +AK EI + K G ++N DD + T
Sbjct: 176 LVEPDLAMITNVGVTHIENLGSKENIFKAKTEITKGLKKGGTLLVNGDDEFFKDYTNDEF 235
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
V KV G G D R AA + G + +++ + F P + NA A
Sbjct: 236 NVVKV--GINHG-DFR--AADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIY 290
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
FG++ Q+ L +F P R + + +GI +++D YN+NP + + A+ LL I
Sbjct: 291 TGFHFGLNYEQIKEGLDDFMPTGNRMK-IEEVNGITLIDDTYNSNPEALKEALGLLNRIG 349
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCK 434
N ++V +LGDMLELG E HE + ++L+ GD + K
Sbjct: 350 GNNRKVAVLGDMLELGEKSEEEHEACGKAAAENGVELLLACGDYAMHYIK 399
>gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A2 str. Kyoto]
gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A2 str. Kyoto]
Length = 462
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 225/417 (53%), Gaps = 41/417 (9%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE NT +L+++A Y R S+ +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVGKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV------VLEKEREMVK-FVIPSP 311
N + F ++ G D + L ++ +LE+ + K F + P
Sbjct: 234 NFESDK-----FKVYKIGTDKKF---DFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVP 285
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
G H +N+ A A + ++ + + N MR + +V G I+ND YNA+P
Sbjct: 286 GKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLD-IVKEKGFTIINDCYNASPD 344
Query: 372 STRAAIDLLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S +AAID++K+I GKR + +LG M ELGS +H ++ Y + IDL+ +G+
Sbjct: 345 SMKAAIDVMKNIK--GKRAIALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGE 399
>gi|451979763|ref|ZP_21928175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrospina gracilis 3/211]
gi|451763042|emb|CCQ89374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrospina gracilis 3/211]
Length = 464
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 201/384 (52%), Gaps = 18/384 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L + F I G FD H+F++ + K ++ ++ DK EG
Sbjct: 28 VSIDTRTL--KAGELFVCIQGDRFDGHDFLNEAIAKKPAGVIVSDRARLPLDK---MQEG 82
Query: 109 NGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
V +TL +L ++A + RN + V VGVTG+ GKSTTK MIA A+ ++
Sbjct: 83 PFAVAVPDTLKALQDLAAHHRNQQDVRV-VGVTGTNGKSTTKEMIA-AITGTRFKTLKTQ 140
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +GV L+L+ + R ++AV+EMGMS GEI LA +A+PEI V+ NV ++H+ L
Sbjct: 141 GNLNNHIGVPLTLLNLTREHEVAVIEMGMSAAGEIRRLAEIAKPEIGVITNVSEAHMVQL 200
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR---LV 282
++ DV AKGE+F+ ++NADDPLV L R + FG DV+ +
Sbjct: 201 KTIRDVQAAKGELFEALSENGTAIVNADDPLVLELADGLRARAITFGLDPSADVQARDIR 260
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
AA V +V +P G+H NA AA A G+ + + L
Sbjct: 261 AADVTRIEFTARVF----DTTAPVRLPFSGMHNVRNALAALATGAALGMKVEGMVPGLEV 316
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
+ R ++ +G+ I+ND YNANP S R AI L ++C+G+R +++G MLELG
Sbjct: 317 TQGLNQRGQVF-EFNGMTILNDTYNANPRSMREAIHTLTALSCSGRRFLVMGAMLELGEQ 375
Query: 403 ERESHEKILSYCCDACIDLIGLVG 426
E +H K+ + ++ ID + VG
Sbjct: 376 ENIAHRKVGEWAVESGIDYLVTVG 399
>gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 455
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 196/378 (51%), Gaps = 13/378 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D R + P F A GQ D H+F+ V V+ V ++V+
Sbjct: 30 VAIDHRQVQPG--HAFVAFVGQRVDGHQFVDEAFRRGASVAVVTEDVKTALGP-CIRVQ- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L ++ +A + R +F G +VG+TGS GK+TTK M+A L +LG V+ S N
Sbjct: 86 ----NALQAVQALARWERG-QFEGPVVGITGSNGKTTTKEMVAAVLGALGPCVYTS-ANQ 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ D + VLEMGM G G+I EL +ARP I V+ ++G +H+E LGS
Sbjct: 140 NNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGSQ 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++A AK E+ + VLN DDP + + R +++G GCD+R + +
Sbjct: 200 ENIALAKTELIASLPNDGIAVLNGDDPWLRRMQHRTSARILWYGMGEGCDIRATSVTWSQ 259
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G+ +V + I G H +NA AA AV G+SL + I L +
Sbjct: 260 EGMSFEV--DTPHGTATLRIRLLGQHNVMNALAAIAVGQTLGISLGDIQIGLGRVEAQRG 317
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R LV + +++DAYNA+P S A++++L+ IA G RV +LGDMLELG ++H
Sbjct: 318 RLR-LVDAGDVTVIDDAYNASPSSVGASLEVLERIARPGHRVAVLGDMLELGEMAVQAHR 376
Query: 409 KILSYCCDACIDLIGLVG 426
++ A +D + VG
Sbjct: 377 EVGRRVASAGVDRLLCVG 394
>gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
gi|156867421|gb|EDO60793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium leptum DSM 753]
Length = 461
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 137/405 (33%), Positives = 208/405 (51%), Gaps = 20/405 (4%)
Query: 29 INEIAESVNGKILKWGPPG---IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I EI +V G + K P + T++R L P F I G+ DAH FI P
Sbjct: 6 ICEIVTAVGGALWKGNPNAEVTSVSTNSRELEPGA--LFVPIVGEKVDAHRFI-PMALDT 62
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGN----GNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G Q ++GF ++G G+ T +L A + R RF+ +VGVTGSV
Sbjct: 63 GAAACFTQQ---EPEEGFKYLDGAVIRVGD--TQKALQEFAAWYRK-RFTLPVVGVTGSV 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GKS+TK MIA AL S G V ++ GN+N+++G+ L++ G+D +IAV+EMGMS GE+
Sbjct: 117 GKSSTKEMIAAAL-SQGKRVHKTAGNYNSQIGLPLTVFGLDHTHEIAVIEMGMSNFGEME 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ +A P VV N+G SH+E L + E++ K I LN DDP++ L
Sbjct: 176 RLSAIASPTSAVVTNIGISHIEQLKTQENIRAEKLHIADTIGEQGALYLNGDDPMLQQLR 235
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+ V++G CD R V + L K +IP+ GLH NA A
Sbjct: 236 ESYTGKIVWYGMESDCDYRAVNIDTVKD--CTRFELHAPFGAHKIMIPALGLHNVSNALA 293
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A AVA G++L + L + + MR ++ I +++D+YNA+P S ++ I +L
Sbjct: 294 AIAVAYDQGLTLDDIRCGLLTYEGLAMRQQIH-ELDKITVIDDSYNASPDSIKSGIGVLM 352
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ GK++ +L DMLELG ++H ++ +Y + +D + VG
Sbjct: 353 AVKSTGKKIAVLADMLELGERSAQAHLELGAYAAASGVDAVLTVG 397
>gi|428277909|ref|YP_005559644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. natto BEST195]
gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
subtilis subsp. natto BEST195]
Length = 481
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 206/400 (51%), Gaps = 32/400 (8%)
Query: 28 TINEIAESVNGKIL--KWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE V G + ++ I + TDTR L ++Q F + G+ FD H F+ + +
Sbjct: 29 TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKL--EQHQLFIPLKGERFDGHTFVE-QAF 85
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G V+ WD+ N V +TL +L +A A ++GVTG
Sbjct: 86 EAGVAAVL-------WDRSVPNPPENHAVILVDDTLTALQQLAK-AYLQELGTRVIGVTG 137
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI L + V ++ GN+NN +G+ L+++ + +IAVLEMGMS KGE
Sbjct: 138 SNGKTTTKDMIHAVLGT-QYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGE 196
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+R+A P+ V+ N+G+SH++ LGS E +A AK EI K V + D+PL+ N
Sbjct: 197 IDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQN 256
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ +G D +L V+ G ++ F IP G H +NA
Sbjct: 257 ---AYSCQTKTYGTGAHNDYQL--QDVSQSEEGTHFTIKGIENT--FFIPILGKHNVMNA 309
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A FG++ LS MR EL+ + SG+ I+NDAYNA+P S +AAI L
Sbjct: 310 MAAIAAGAYFGITPEGAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQL 369
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419
+ + GK++++LGDMLELG E H++ C A I
Sbjct: 370 TESLEGYGKKMLVLGDMLELGDLEETFHKE-----CGAVI 404
>gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
15053]
gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
15053]
Length = 457
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 126/370 (34%), Positives = 218/370 (58%), Gaps = 15/370 (4%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F AI G++ +AH+FI P+ KG + V+ ++ + D ++ VE G +L+
Sbjct: 40 KDYLFVAIDGENVNAHKFI-PDTIEKGALCVVSHEDLGDTDFPYILVESTGQ-----ALL 93
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
++A R+S F +VG+TGSVGK++TK MIA ++ S V ++ GN+NN G+ +++
Sbjct: 94 DIAKLYRDS-FDVTVVGITGSVGKTSTKEMIA-SVVSQKYKVHKTLGNFNNEWGLPITIF 151
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+D + ++ +LEMG++ GE+ L+ +A P+I V+ N+G +HLE + E + + K ++
Sbjct: 152 EMDESHEVVILEMGVNHFGEMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMI 211
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLE 298
Q+ K G +LN DD L++ + +GV V FG C + A+ + GL G +
Sbjct: 212 QDMKNGGSIILNGDDDLLSKMGPVKGVTPVLFGTNEDC--QCYASGIVPMGLKGTACTIH 269
Query: 299 -KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357
+ E +IP+PG H+ NA A AAV G++ ++ + + + R+ ++S
Sbjct: 270 LPDGEAFDCLIPTPGAHMVSNALAGAAVGAALGLTADEIKAGIEAHTTLPGRNN-IISTG 328
Query: 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDA 417
+ I++D YNANP+ST+AAID+L D+A G++V +LG+M ELG+ E+E H ++ Y
Sbjct: 329 SLMILDDCYNANPVSTKAAIDVL-DMAI-GRKVAVLGNMGELGNNEKELHREVGEYAAKH 386
Query: 418 CIDLIGLVGD 427
ID++ +GD
Sbjct: 387 GIDVVCGIGD 396
>gi|423370479|ref|ZP_17347886.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD142]
gi|401073950|gb|EJP82359.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD142]
Length = 458
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 208/409 (50%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D + G ++ E + F +P G H
Sbjct: 233 RVPEMNLAAETVTFGDARANDYYPTIVTLQATGTHFKM---NRDETLSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|423590491|ref|ZP_17566553.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD045]
gi|401220473|gb|EJR27107.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD045]
Length = 458
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 204/392 (52%), Gaps = 25/392 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ ++ + VNG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 6 LKQVEQMVNGTELAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVEN 63
Query: 85 KGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 64 GAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 116 GKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+++ARP ++ N+G++HL LGS E ++ AK EI + G V V N D+PL+ N
Sbjct: 175 FLSKLARPNAAIITNIGEAHLMDLGSREAISEAKLEIVTGLQEGGVFVYNGDEPLLTN-R 233
Query: 262 VP---RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
VP V FG R D + G ++ E + F +P G H N
Sbjct: 234 VPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDENISFYLPVLGKHNVYN 290
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFH 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + K++V+LGDMLELG E + H ++
Sbjct: 351 LMNGLDGFAKKIVVLGDMLELGDQEVQFHYEV 382
>gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
turgidum DSM 6724]
gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
turgidum DSM 6724]
Length = 459
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/408 (32%), Positives = 211/408 (51%), Gaps = 25/408 (6%)
Query: 28 TINEIAESVNGKILKWG---PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ +I E+ NG ++K I TDTR + N+++ F A+ G+ FD H+F+ +
Sbjct: 6 TVEDILEATNGVLIKGDIREKVDSISTDTRNI--NEDEVFIALKGEKFDGHDFVKDAIL- 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG G+I ++ + VEGN V +TL +L ++A Y R + ++GVTGS
Sbjct: 63 KGVKGIIISRE--------IAVEGNIFVIRVQDTLKALQDIANYYR-RKLKTKVIGVTGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK++I L +G + S N+NN +GV LS++ + VD VLEM M KGEI
Sbjct: 114 SGKTTTKNLIGKLLSIVG-KTYVSRENFNNEIGVPLSILDAEEDVDFLVLEMAMRNKGEI 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++A P+I V+ N+G +H+ LGS E + AK EIF+ K V +LN DDP +
Sbjct: 173 SLLSKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFEHIKQDGVAILNNDDPFSMRI 232
Query: 261 TVPRGVRKVFFGWRRGCDVR--LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
++K FG+ D+R +V N L + K+ +K +P L++ N
Sbjct: 233 YEKLKIKKYTFGFDERSDLRGEIVEKNEENYLLKINFPDGKD---IKLSLPIYPLNIYRN 289
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
+ V + F + R L +G+ I++D YNANP S R AI+
Sbjct: 290 LLLSLLVLWVISPESVYSLEKDFYFDLPKQRLNLKRKENGLVIIDDTYNANPDSMRTAIE 349
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L + +G+++V+LGDMLELG + H +++ ID+ G
Sbjct: 350 YLDLLKSSGRKIVLLGDMLELGDHSIDGHREVIEEVFKRNIDMAIFYG 397
>gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. ATCC 3502]
gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. ATCC 19397]
gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. Hall]
gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. ATCC 3502]
gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. ATCC 19397]
gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A str. Hall]
Length = 462
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 225/417 (53%), Gaps = 41/417 (9%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE NT +L+++A Y R S+ +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVSKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV------VLEKEREMVK-FVIPSP 311
N + F ++ G D + L ++ +LE+ + + F + P
Sbjct: 234 NFESDK-----FKVYKIGTDKKF---DFNGDNLNLEAESIKFDILERGKTAYRCFSVNVP 285
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
G H +N+ A A + ++ + + N MR + +V G I+ND YNA+P
Sbjct: 286 GKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLD-IVKEKGFTIINDCYNASPD 344
Query: 372 STRAAIDLLKDIACNGKRVV-ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S +AAID++K+I GKR + +LG M ELGS +H ++ Y + IDL+ +G+
Sbjct: 345 SMKAAIDVMKNIK--GKRTIALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGE 399
>gi|336115444|ref|YP_004570211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 2-6]
gi|335368874|gb|AEH54825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
coagulans 2-6]
Length = 458
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/398 (32%), Positives = 205/398 (51%), Gaps = 29/398 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+C D+R + K + +TG+H D H+++ + + +G + W K
Sbjct: 31 VCIDSRKI--EKGNLYVPLTGRHADGHQYVE-DAFRRGAAASL-------WQKDVPNPPA 80
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+ + +T SL +A RN+ +VG+TGS GK+TTK M+A L S V ++
Sbjct: 81 HVPLLIVEDTEKSLQELAKSYRNA-LRAKVVGITGSNGKTTTKDMVASVL-SEKFKVQKT 138
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN GV L+L+ +D +IAV+EMGMS KGEI L +ARP++ ++ N+G++H+++
Sbjct: 139 EGNFNNHQGVPLTLLSLDENTEIAVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQN 198
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRGCDVR 280
LGS E +A AK EI + + + D+PL V N+T G+R FG G D+
Sbjct: 199 LGSREAIADAKLEITEGLPENGLLIYMGDEPLLQERVPNIT---GIRTKTFGKGHGNDLY 255
Query: 281 LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
V + G + + + F +P G + IN+ AA FG+ ++ L
Sbjct: 256 PVEWRQETNGSAFRTNASGD---IGFYLPVLGEYNVINSLAAILAGREFGMPFEEIRAGL 312
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
MR E+ +G KI+NDAYNA+P S RAAI L++ G+++++LGDMLELG
Sbjct: 313 GKTRLSAMRMEMADGINGSKIINDAYNASPTSMRAAIRLVEQFEGTGRKILVLGDMLELG 372
Query: 401 STERESHEKILSYCCDACIDLI---GLVGDRVVVQCKW 435
E H ++ ID + G +G + C +
Sbjct: 373 EKEAAFHREVGRSLNPEKIDFVFTYGKLGRLIAEACDF 410
>gi|423456147|ref|ZP_17433000.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5X1-1]
gi|401131813|gb|EJQ39462.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5X1-1]
Length = 458
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 205/409 (50%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + ++G L GI DTR + K + I G+ FD H F+
Sbjct: 5 TLKQVEQMIDGTGLVEKYEGITIQGASIDTRKI--EKGNLYVPIQGERFDGHAFVDK--- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTL-NSLVNMACYARNSR--FSGVLVGVTGS 140
V V W KG N V + ++L + A+N R +VGVTGS
Sbjct: 60 -----AVENGAVATLWMKGVANPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSQGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D + G ++ E + F +P G H
Sbjct: 233 RVPEMNLVAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETLSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + KR+V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKRIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister micraerophilus DSM 19965]
gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister micraerophilus DSM 19965]
Length = 460
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/391 (32%), Positives = 206/391 (52%), Gaps = 21/391 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ NEI ++ + +++ G+ + D+R + +N F A+ G+ FD H+F+
Sbjct: 4 FSFNEIKKATSAELVSGKKTGVCFNVSIDSRTI--KENDLFIALKGERFDGHDFVINACK 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
+I + C ++ + V +T + ++A + R RF +V VTG
Sbjct: 62 KGASAVIISDSEC------LEKISEDCTVFLVKDTKKAFEDLAHFNR-MRFDIPVVAVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK MI++ L S NV + N NN +G++L+L+ I + D V+EMGM G G+
Sbjct: 115 SNGKTTTKDMISVLLSS-KFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQ 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I EL +A+P I V+ NVG SH+ LGS E++A+AKGE+ Q + VLN DD V
Sbjct: 174 IEELCNIAKPTIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKK 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ R +++G + + +V+ G + E K + G+H +A
Sbjct: 234 MGENFKGRVIYYGLNG--NYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDA 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA + A + GV + ++ LS+FSP R L+ +GIKI++DAYNANP+S A+
Sbjct: 292 LAATSTARILGVDVTKIQRVLSDFSPRAGRQS-LIEINGIKIIDDAYNANPLSMEMALRS 350
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKI 410
LK I+ K +V L DM ELG E + H +I
Sbjct: 351 LKQISAKNKYLV-LADMKELGKNEEKFHYEI 380
>gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
BAA-613]
gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
BAA-613]
Length = 477
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/418 (30%), Positives = 214/418 (51%), Gaps = 26/418 (6%)
Query: 28 TINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+ E+ G +L I D+R + + F I G+ DAH F+ +
Sbjct: 5 TVKELLEATGGNLLHGQEDQHVKHISLDSRTM--EGDDLFVPIVGERVDAHRFLCQAIAS 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV---------------NTLNSLVNMACYARNSR 129
V C K V+ + N +T +L ++ + R S
Sbjct: 63 GAAVVFTSEHHCGEDVKACVRQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCRKS- 121
Query: 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAV 189
S LVG+TGSVGK+TT+ MIA AL S G V+++ GN N++VGV +++ I ++ +I V
Sbjct: 122 LSLPLVGITGSVGKTTTREMIAEAL-SAGFKVYKTPGNSNSQVGVPITIAEIPQSAEIGV 180
Query: 190 LEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCV 249
+E+GMS GE+ +AR+AR + V+ N+G +H+E LGS E + K I + +
Sbjct: 181 IELGMSEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEKLHIQEGMPPEGILF 240
Query: 250 LNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIP 309
LN DDPL+A++ G +KV +G R CD R + G V R V+ +
Sbjct: 241 LNGDDPLLASVVPKEGRKKVLYGLGRDCDYRAEDLHLEEGYPVFTAVHGDCRVRVRLKV- 299
Query: 310 SPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369
G H+ NA AA AVA +G+S+ + ++L F + R ++ G+ +++D+YNA+
Sbjct: 300 -MGSHMVSNAMAALAVADTYGLSMEKAALALGQFKGYKGRQQIF-EWGGVTVIDDSYNAS 357
Query: 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
P+S +A +++L + +++ +L DM ELG H +I +Y + +D++ L+G+
Sbjct: 358 PVSMKAGLEVLDSVKGE-RKIAVLADMKELGPDTERFHAEIGAYIGEHPLDMVLLLGE 414
>gi|387817733|ref|YP_005678078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Clostridium botulinum H04402 065]
gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Clostridium botulinum H04402 065]
Length = 462
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 226/417 (54%), Gaps = 41/417 (9%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE NT +L+++A Y R S+ +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVGKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI ++ A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMSEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV------VLEKEREMVK-FVIPSP 311
N + F ++ G D + L ++ +LE+ + K F + P
Sbjct: 234 NFESDK-----FKVYKIGTDKKF---DFNGDNLNLEAENIEFDILEQGKTAYKCFGVNVP 285
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
G H +N+ A A + ++ + + N MR + +V G I+ND YNA+P
Sbjct: 286 GKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLD-IVKEKGFTIINDCYNASPD 344
Query: 372 STRAAIDLLKDIACNGKRVV-ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S +AAID++K+I GKR + +LG M+ELG+ +H ++ Y + IDL+ +G+
Sbjct: 345 SMKAAIDVMKNIK--GKRTIALLGSMMELGNEGYRAHREVSEYAKEKGIDLLFSIGE 399
>gi|423473253|ref|ZP_17449995.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6O-2]
gi|402426405|gb|EJV58530.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6O-2]
Length = 458
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 204/409 (49%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + ++G L GI DTR + K + I G+ FD H F+
Sbjct: 5 TLKQVEQMIDGTGLAEKYEGITIQGASIDTRKI--EKGNLYVPIQGERFDGHAFVDK--- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTL-NSLVNMACYARNSR--FSGVLVGVTGS 140
V V W KG N V + ++L + A+N R +VGVTGS
Sbjct: 60 -----AVENGAVATLWMKGVANPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSQGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+ +ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSTLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D + G ++ E + F +P G H
Sbjct: 233 RVPEMNLVAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETLSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + KR+V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKRIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
botulinum C str. Eklund]
gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
botulinum C str. Eklund]
Length = 457
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 220/412 (53%), Gaps = 25/412 (6%)
Query: 25 PIWTINEIAESVNGKI-LKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ EI +V GK+ + G I TDTR + K+ F A+ G +F+A+++I +
Sbjct: 2 ELLKFEEIVNAVGGKVHINSGNHKYTNISTDTRKIT--KDSIFIALKGDNFNANDYI-VD 58
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV------NTLNSLVNMACYARNSRFSGVLV 135
KG I +++ F + N N NT +L+++A R S+ + ++
Sbjct: 59 ASDKGANLCIVDEI------NFNDSDLNENTSIILVENTRKALLDLAELYR-SKLNIKII 111
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGS GK++TK + A AL S VF++ GN+NN VG+ L + +D + D+AVLEMGMS
Sbjct: 112 GITGSTGKTSTKDLTAAALSS-KYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMS 170
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
EI LA++A+P+I ++ N+G SH+E+L + E++ +AK EI + ++N ++
Sbjct: 171 NFEEIHRLAKVAKPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNKEND 230
Query: 256 LVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
L+ N+ + + G+ + DV A + ++ + E E +F IP PG H
Sbjct: 231 LLKNVK-SNEYKLMSIGFEK--DVDYTAEDIFTDENHIEFTVCHEDEKERFNIPVPGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
+N+ A + ++ + N S MR + +V + G IV+D+YNA+P S +A
Sbjct: 288 ILNSMLAIVAGRSLDIEYDKLKQGIKNLSVTSMRLD-IVKKDGFTIVDDSYNASPDSMKA 346
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AID++ I N +++ ILG M ELG + H+++ Y + ID + VG+
Sbjct: 347 AIDVITTIKGN-RKIAILGTMKELGDDSYKFHKEVAEYAKENNIDFLITVGE 397
>gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus sp. HGF5]
gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus sp. HGF5]
Length = 473
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 202/386 (52%), Gaps = 21/386 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL-YGKGCVGVIGNQVCNNWDKGFVQVE 107
+ TD+R + P F I G+ FD HEF+ L G G + D + VE
Sbjct: 30 VGTDSRTIQPG--NLFVPIVGEKFDGHEFVESVLASGAGAAFWQRDHQPVPADLPLILVE 87
Query: 108 GNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+TL +L ++A Y SR +VG+TGS GK+T K M++ LE+ NV ++ G
Sbjct: 88 -----DTLKALQSLAAVYLSESRAK--VVGITGSNGKTTVKDMVSALLETT-YNVHKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ + DI VLEMGMSG+ EI L+ +ARP++ V+ NVG++HL LG
Sbjct: 140 NYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGWRRGCDVR 280
S E++ARAK EI K G + + + D+PL+ + P G+R FG + D
Sbjct: 200 SREEIARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEETVKPEGLRTYTFGNQDTNDDY 259
Query: 281 LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
G+ + + F +P G H +NA AA AVA G+ +
Sbjct: 260 PTGLMFHARGI---IFTSRLHAGEGFSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGF 316
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
++ MR E + + G+ ++NDAYN++P + +AA+D+L D+ +R+ +LGDMLELG
Sbjct: 317 AHLKLSSMRIEAVETAFGVTVLNDAYNSSPTAVKAAVDVLGDMKGYRRRIAVLGDMLELG 376
Query: 401 STERESHEKILSYCCDACIDLIGLVG 426
E H +I Y DL+ G
Sbjct: 377 QREESFHAEIGDYLSPDNADLVFTYG 402
>gi|385799625|ref|YP_005836029.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Halanaerobium praevalens DSM 2228]
gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Halanaerobium
praevalens DSM 2228]
Length = 465
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 195/368 (52%), Gaps = 7/368 (1%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F AI GQ+ D H+++ E G VI ++ + + +T +L +A
Sbjct: 41 LFIAIIGQNKDGHQYLK-EAVKNGASAVIVDRNSPAIQAAYPNLSVLKVEDTTKALQAIA 99
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
R+ ++G+TGS GK+TTK MI ++ S ++ GN+NN++G+ L+L+ +D
Sbjct: 100 FNYRHKFDDLKVIGITGSAGKTTTKDMI-FSVLSEKYYCLKTEGNYNNQIGLPLTLLRLD 158
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
D A+LEMGMSG EI LA++A PEI ++ N+ +HLE LGSLE++A+AK E+
Sbjct: 159 GREDFAILEMGMSGLAEIDLLAKIAVPEIGIITNIAAAHLEQLGSLENIAQAKKELIDNL 218
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
D +LN D+ + + ++FG+ +G D R+ + ++ + +
Sbjct: 219 TAADTAILNYDNQYTKKIGTNSKAQTIYFGFEKGADARIENYFFNSKTETLKFEFTYQAK 278
Query: 303 MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQV--GISLSNFSPVQMRSELLVSRSGIK 360
KF+ G H N A +A + + ++ G+ + FS ++M E + ++ +
Sbjct: 279 NYKFIFNKAGKHNLYNILPALIIAFKYKLKPEEIQKGLLKTKFSSLRM--EFIQLKNKAR 336
Query: 361 IVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
I+ND YNANP+S +AA+D+L+ I +++ IL MLELG + H++I Y ID
Sbjct: 337 IINDCYNANPLSVKAALDVLEQIKAK-RKIAILASMLELGEKSLKKHQQIGLYAAAKKID 395
Query: 421 LIGLVGDR 428
L+ +G +
Sbjct: 396 LLITIGPK 403
>gi|423398828|ref|ZP_17376029.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-1]
gi|401646012|gb|EJS63646.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-1]
Length = 458
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/393 (33%), Positives = 205/393 (52%), Gaps = 25/393 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITMQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAIE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ +IAVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILDLEENTEIAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D A + G ++ E + F +P G H
Sbjct: 233 RVPGMELVAETVTFGDARANDYYPTAVTLQATGTHFKM---NRDENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + G+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVTTDGGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + +++V+LGDMLELG E + H ++
Sbjct: 350 HLMNGLDGFAQKIVVLGDMLELGDQEVQFHYEV 382
>gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
thermopropionicum SI]
gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
thermopropionicum SI]
Length = 469
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/407 (32%), Positives = 217/407 (53%), Gaps = 23/407 (5%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ E+ G+I++ G PG + TDTR L K + FFA++G+ DAH F++
Sbjct: 5 TLKELERIACGRIIQ-GDPGTVLSSVSTDTRRL--KKGEIFFALSGERHDAHNFLAQAAG 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNS---RFSGVLVGVTGS 140
V+ + VE NTL +L +A + R S R V +
Sbjct: 62 AGAGCLVVSRTADLPAGVPVLAVE-----NTLAALQALAAFNRKSCGARVVAVTGSTGKT 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
K T S+++ L +L +S GN+NN +G+ L+L+ +D +IAV+EM M G GEI
Sbjct: 117 TTKDMTASILSTRLRTL-----KSEGNFNNEIGLPLTLLRLDETCEIAVVEMAMRGAGEI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R+A+P+ V+ N+G++HLE LG++ ++A AKGE+ + G +LNA+ P +
Sbjct: 172 DALCRIAKPDCAVITNIGEAHLELLGTVSNIAAAKGEVLEHIPAGGFALLNAEAPFIRRE 231
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ +++G D+R + G +V+L+ ER +F +P PG H +NA
Sbjct: 232 AGRCRGKVIYYGIDCPADIRAANIRPEGRGSRFEVILDGERR--EFFLPVPGRHNVMNAL 289
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA VA G++ +V L+ + MR E++ +++ ++I+NDAYNANP S +AA+ +L
Sbjct: 290 AAIGVARELGLTWEEVARGLAAVTLTGMRLEIIEAKN-LRIINDAYNANPASAKAALQVL 348
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
K++A + V +LG+MLELG E H ++ A + + VGD
Sbjct: 349 KEMAGGRRAVAVLGNMLELGPRAAEGHREVGEAAAGARVSCLVTVGD 395
>gi|423409730|ref|ZP_17386879.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-3]
gi|401652845|gb|EJS70397.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-3]
Length = 458
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/393 (33%), Positives = 205/393 (52%), Gaps = 25/393 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + VNG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMVNGTGLAEQYEGITMQGVSIDTRKI-ENGN-LYVPIQGERFDGHAFVDKAIE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL++L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVANPPENLPVIFVE-------DTLSALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ +IAVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILDLEENTEIAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D A + G ++ E + F +P G H
Sbjct: 233 RVPGMELVAETVTFGDARANDYYPTAVTLQATGTHFKM---NRDENISFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + G+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVTTDGGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ + +++V+LGDMLELG E + H ++
Sbjct: 350 HLMNGLDGFAQKIVVLGDMLELGDQEVQFHYEV 382
>gi|423514500|ref|ZP_17491007.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA2-1]
gi|402442075|gb|EJV74017.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA2-1]
Length = 458
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 207/409 (50%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQRGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
P V FG R D + G ++ E + F +P G H
Sbjct: 233 RFPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETLSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
daltonii FRC-32]
gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
daltonii FRC-32]
Length = 468
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 145/414 (35%), Positives = 215/414 (51%), Gaps = 31/414 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ +I+EI ++ G ++ G + + TD+R + Q F A+ G FD HEFI L
Sbjct: 1 MLSIDEIIQATGGTLIGSGGKMVSGVSTDSRSVVAG--QLFVALKGDRFDGHEFIETAL- 57
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGS 140
GV V + E + TL +L ++A R +FS L+G+TGS
Sbjct: 58 ---AKGVRTFLVAADSLAARAPAENASYIAVTETLRALGDLAAGYRR-KFSIPLIGITGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK M+A L G ++ GN NN +G+ L L+ + AVLEMGMS GEI
Sbjct: 114 NGKTTTKEMLATILGQTGPG-LKTSGNLNNLIGLPLMLLRMTGRDRWAVLEMGMSEPGEI 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A P + ++ N +HL S+GS+E VA+AKGE+FQ K G V V NADDPL++ L
Sbjct: 173 DRLAEIAEPGVGIITNAFTAHLASMGSVEAVAKAKGELFQRLKTGGVAVYNADDPLISRL 232
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGL------GVQVVLEKEREMVKFVIPSPGLH 314
GV ++ FG R A+V++ G+ GV+ L + + + G H
Sbjct: 233 PTAAGVSRLSFGLR--------GAEVSSEGIKTLGLEGVRFTLRLPDGEIPVKMRAFGQH 284
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG-IKIVNDAYNANPIST 373
NA AAAA A G+ + L F+P R V + G I +++D+YNANP S
Sbjct: 285 NIYNALAAAAAAHAIGLDHQTIRAGLEEFTPYDKR--FHVEQVGDIVLIDDSYNANPASI 342
Query: 374 RAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AA+ LKDI + + +LGDMLELGS +H ++ C++ + ++G+
Sbjct: 343 AAALVTLKDIRQQNRAIAVLGDMLELGSGAPAAHREV-GLLAATCVERLYVMGE 395
>gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum Ba4 str. 657]
gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum Ba4 str. 657]
Length = 462
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 222/414 (53%), Gaps = 35/414 (8%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ +
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAIEKG 63
Query: 86 GCVGVIG----NQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ ++ ++V ++VE NT +L+++A Y R S+ +V +TGS
Sbjct: 64 AALCIVSEINFSEVKVGKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAITGST 117
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+ EI
Sbjct: 118 GKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIH 176
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
+A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++N
Sbjct: 177 NMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFE 236
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV------VLEKEREMVK-FVIPSPGLH 314
+ F ++ G D + L ++ +LE+ + + F + PG H
Sbjct: 237 SDK-----FKVYKIGTDKKF---DFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKH 288
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
+N+ A A + ++ + + N MR + +V G I+ND YNA+P S +
Sbjct: 289 NVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLD-IVKEKGFTIINDCYNASPDSMK 347
Query: 375 AAIDLLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AAID++K+I GKR + +LG M+ELGS +H ++ Y + IDL+ +G+
Sbjct: 348 AAIDVMKNIK--GKRTITLLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGE 399
>gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 468
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 208/393 (52%), Gaps = 20/393 (5%)
Query: 28 TINEIAESVNGKILKWGPPG----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T +EI + + + G G I TDTR + F A+ G+HFD F + E
Sbjct: 6 TWDEICTATGASVRRGGVAGDTVLPITTDTRKVV--AGDLFVALRGEHFDGTAF-AAEAL 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGS 140
+G V+ +Q + G + +TL + ++A +A +F +V +TGS
Sbjct: 63 ERGAAAVLVDQKTPATALTALDTARGGVLVAEDTLRAYQDIA-HAWRMKFDIPVVAITGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK + A L G V ++ N+NN VG+ L+L+GI AV+E+GM G G+I
Sbjct: 122 NGKTTTKDLTAAVLSGRG-KVCRTAANYNNEVGLPLTLLGITPEDTAAVVEIGMRGMGQI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA + P I +V NV + H+E LGS+E++A+AK E+ G +LNADDP VA +
Sbjct: 181 AALAPITAPSIGIVTNVCEVHMELLGSIENIAKAKAELVTAIPAGGTVILNADDPRVAAM 240
Query: 261 --TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+ GVR + +G DVR A Q G V + ER ++ IP PG H N
Sbjct: 241 RSSAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWDGERH--EYAIPLPGRHNVSN 298
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI-KIVNDAYNANPISTRAAI 377
A AA A + G++ ++ + L++ + +MR E V + G ++NDAYNA+P S RA++
Sbjct: 299 ALAALAAGFVLGMTPQEMQVGLTHLTAEKMRYE--VHQIGAWTLINDAYNASPSSMRASL 356
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+ + G+R+ +LGDMLELG+ ++H +
Sbjct: 357 ETTAAL-YPGRRIAVLGDMLELGAAAEKAHRDV 388
>gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum Bf]
gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum Bf]
Length = 462
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 222/414 (53%), Gaps = 35/414 (8%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ +
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAIEKG 63
Query: 86 GCVGVIG----NQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ ++ ++V ++VE NT +L+++A Y R S+ +V +TGS
Sbjct: 64 AALCIVSEINFSEVKVGKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAITGST 117
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+ EI
Sbjct: 118 GKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIH 176
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
+A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++N
Sbjct: 177 NMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFE 236
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV------VLEKEREMVK-FVIPSPGLH 314
+ F ++ G D + L ++ +LE+ + + F + PG H
Sbjct: 237 SDK-----FKVYKIGTDKKF---DFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKH 288
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
+N+ A A + ++ + + N MR + +V G I+ND YNA+P S +
Sbjct: 289 NVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLD-IVKEKGFTIINDCYNASPDSMK 347
Query: 375 AAIDLLKDIACNGKRVV-ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AAID++K+I GKR + +LG M+ELGS +H ++ Y + IDL+ +G+
Sbjct: 348 AAIDVMKNIK--GKRTIALLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGE 399
>gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH621]
gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH621]
Length = 458
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 209/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIE-NGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D + G ++ E + F +P G H
Sbjct: 233 RVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETLSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST196]
gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST196]
Length = 458
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 209/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIE-NGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D + G ++ E + F +P G H
Sbjct: 233 RVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETLSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH603]
gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH603]
Length = 458
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 209/409 (51%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIE-NGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + ++GVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVIGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D + + G ++ E F +P G H
Sbjct: 233 RVPEMNLAAETVTFGDARANDYYPTTVTLQSTGTHFKM---NRDETSSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLGGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum NCTC 2916]
gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum NCTC 2916]
Length = 462
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 225/417 (53%), Gaps = 41/417 (9%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE NT +L+++A Y R + +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVSKSSYVIKVE-----NTNKALLDLAKYYR-GKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV------VLEKEREMVK-FVIPSP 311
N + F ++ G D + L ++ +LE+ + + F + P
Sbjct: 234 NFESDK-----FKVYKIGTDKKF---DFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVP 285
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
G H +N+ A A + ++ + + N MR + +V G I+ND YNA+P
Sbjct: 286 GKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLD-IVKEKGFTIINDCYNASPD 344
Query: 372 STRAAIDLLKDIACNGKRVV-ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S +AAID++K+I GKR + +LG M+ELG+ +H ++ Y + IDL+ +G+
Sbjct: 345 SMKAAIDVMKNIK--GKRTIALLGSMMELGAEGYRAHREVSEYAREKGIDLLFSIGE 399
>gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anoxybacillus flavithermus WK1]
gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Anoxybacillus flavithermus WK1]
Length = 458
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 201/383 (52%), Gaps = 16/383 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ TDTR + + + + G F+ H+F+ E + KG + ++ N D + V
Sbjct: 30 VSTDTRTI--ERGNLYVPLKGATFNGHQFVK-EAFEKGAAAALWSKHEPNAPTDVPLIFV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E ++L +L +A +A + ++GVTGS GK+TTK MIA L ++ V ++ G
Sbjct: 87 E-----DSLVALQQLA-HAYRKQLRACIIGVTGSNGKTTTKDMIASLLGTV-YRVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ + + AV+EMGMSG GEI L+ +A P++ ++ N+G+SHL+ LG
Sbjct: 140 NLNNHIGVPLTLLRLKEETEYAVVEMGMSGFGEIELLSTLAEPDVSIITNIGESHLQELG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKV-FFGWRRGCDVRLVAAQ 285
S E +A AK EI + K + + + D+PL+ + V FG D + +
Sbjct: 200 SREGIATAKFEIVKGLKRDGLFIYHGDEPLLQTRVENANLSHVQTFGMAPTNDYYPLDIR 259
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
V G +V F +P G H +NA AA AVA V + + S
Sbjct: 260 VQADGTTFKV---NRWPNETFRMPLLGRHHVMNALAAIAVARFAFVDIDHIKEGFLRLSV 316
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
+MR+E++ G+ I+NDAYNA+P S RAA++LL + K++ I+GDMLELG E
Sbjct: 317 TKMRTEVIKRSDGVTIINDAYNASPTSMRAALELLGQLTGYRKKIAIVGDMLELGEQEIA 376
Query: 406 SHEKILSYCCDACIDLIGLVGDR 428
HE+I ID + G+R
Sbjct: 377 FHEQIGEMIDPQKIDYVLTYGER 399
>gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
weihenstephanensis KBAB4]
gi|423515082|ref|ZP_17491563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA2-4]
gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
weihenstephanensis KBAB4]
gi|401168045|gb|EJQ75313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA2-4]
Length = 458
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 132/411 (32%), Positives = 207/411 (50%), Gaps = 29/411 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIE-NGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L + A+N R +VGVT
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE----------DTLAALQMLAKNYRDQLDVKVVGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
N VP V FG R D + G ++ E + F +P G H
Sbjct: 232 N-RVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETLSFYLPVLGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + A
Sbjct: 288 VYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEA 347
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 348 AFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum F str. Langeland]
gi|384461859|ref|YP_005674454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Clostridium botulinum F str. 230613]
gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum F str. Langeland]
gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Clostridium botulinum F str. 230613]
Length = 462
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 225/417 (53%), Gaps = 41/417 (9%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE NT +L+++A Y R S+ +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVGKSSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ L + VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVGAVL-AEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV------VLEKEREMVK-FVIPSP 311
N + F ++ G D + L ++ +LE+ + K F + P
Sbjct: 234 NFESDK-----FKVYKIGTDKKF---DFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVP 285
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
G H +N+ A A + ++ + + N MR + +V G I+ND YNA+P
Sbjct: 286 GKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLD-IVKEKGFTIINDCYNASPD 344
Query: 372 STRAAIDLLKDIACNGKRVV-ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S +AAID++K+I GKR + +LG M+ELGS +H ++ Y + IDL+ +G+
Sbjct: 345 SMKAAIDVMKNIK--GKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGE 399
>gi|336435665|ref|ZP_08615380.1| hypothetical protein HMPREF0988_00965 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336001118|gb|EGN31264.1| hypothetical protein HMPREF0988_00965 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 456
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 130/406 (32%), Positives = 207/406 (50%), Gaps = 21/406 (5%)
Query: 27 WTINEIAESVNGKIL----KWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
T+ EIA++ G G + D+R + K+ F AI G D H FI P+
Sbjct: 4 MTLREIAQACKGTYFGSEESMGKEVSSVVIDSRKV--EKDSLFVAIRGARVDGHTFI-PK 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G + + + + +++VE + +L ++A + R S +VG++GSV
Sbjct: 61 TIEDGALCALSEEDLGDVSYPYIRVE-----SCTQALKDLAEHYRKS-LDIKVVGISGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK MIA LE NV ++ GN+NN +GV L++ I ++AVLEMG+SG GE+
Sbjct: 115 GKTSTKEMIASVLEQ-KFNVLKTEGNFNNEIGVPLTIFRIREEHEVAVLEMGISGFGEMT 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA+MARP+I V N+G +HLE LGS + + +AK E+ +LN DD +A+
Sbjct: 174 RLAKMARPDICVFTNIGCAHLEQLGSRDGILKAKTEMIAYMNPDGSILLNGDDDKLASYL 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGLHLAINAC 320
G++ V FG D A Q+ N GL G I PG H+ NA
Sbjct: 234 PENGIKPVRFGLHTENDFH--AEQIENQGLRGTDARFVTPESAFSAHISIPGNHMVYNAL 291
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
A AV G++ Q+ + P+ R+ L+ +++D YNANP+S +++ID+L
Sbjct: 292 AGIAVGYALGMTDEQIKAGIEALVPLAGRNN-LIETGKFTVIDDCYNANPVSMKSSIDVL 350
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ + + V +LGDM ELG E+ H + + + +D++ +G
Sbjct: 351 E--KADTRTVAVLGDMFELGDNEKAMHFDVGVHAAKSGVDVLICIG 394
>gi|334127471|ref|ZP_08501383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Centipeda periodontii DSM 2778]
gi|333389425|gb|EGK60590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Centipeda periodontii DSM 2778]
Length = 468
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 201/369 (54%), Gaps = 18/369 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR +A F A+ G++FD +F + L+ KG V+ N + + ++ E
Sbjct: 30 ITTDTRKIAAG--DLFIALRGENFDGADFAADALH-KGAAAVLVNAPLSASVQKDLKKE- 85
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G V +TL + +A +A +F +V +TGS GK+TTK + A L G V ++
Sbjct: 86 KGTVLTVPDTLKAYQEIA-HAWRMKFDIPVVAITGSNGKTTTKDLTAAVLSGRGA-VCRT 143
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN VG+ L+L+GI AV+E+GM G G+I LA +A P I +V NV + H+E
Sbjct: 144 AANYNNEVGLPLTLLGITEDDTAAVVEIGMRGLGQIAALAPVAAPNIGIVTNVCEVHMEL 203
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLV 282
LGS+E++A+AK E+ + G +LNADD VA + GVR + +G D+R
Sbjct: 204 LGSIENIAKAKAELVEAIPAGGTVLLNADDERVAAMRPMAADGVRILTYGIGADADIRAE 263
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A ++A GG V ER + IP G H NA AA A + G + ++ L
Sbjct: 264 ALRLAAGGSQFMVTWGNERH--DYSIPLAGRHNVSNALAALAAGFVLGCTPQEMQAGLRT 321
Query: 343 FSPVQMRSELLVSRSGI-KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
+P +MR E V G + +NDAYNA+P S AAI+ + +G+R+ +LGDMLELG+
Sbjct: 322 LTPTKMRYE--VHEIGARRFINDAYNASPSSMCAAIETTASL-YHGRRIAVLGDMLELGA 378
Query: 402 TERESHEKI 410
E+H +I
Sbjct: 379 AAEEAHREI 387
>gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacillus flagellatus KT]
gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacillus flagellatus KT]
Length = 453
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 142/407 (34%), Positives = 213/407 (52%), Gaps = 24/407 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ ++EIA++ G ++ G +I TD+R L P Q F A+ G+ FD H++ L
Sbjct: 1 MMYLSEIAKATGGTLV--GQDVLIQSVGTDSRKLEPA--QLFVALKGERFDGHDYARAVL 56
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+G V+ + V+ +T +L +A Y R S+FS + +TGS G
Sbjct: 57 -SEGATAVLLSHDVGATPAVLVE-------DTRLALGQLAAYWR-SKFSIPVAAITGSNG 107
Query: 143 KSTTKSMIALALE-SLGVN--VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
K++ K M+A L + G + V + GN NN +G+ L+L+ + AV+EMGM+ GE
Sbjct: 108 KTSVKEMLAAILRVAAGADDAVLATQGNLNNDIGLPLTLLRLHERHRYAVVEMGMNHAGE 167
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L R+ RP++ ++ N +HL LGS+E VA+AKGEIF+ V V+NADD
Sbjct: 168 ISYLTRIGRPDVALINNATAAHLGGLGSVEGVAKAKGEIFEGLADDGVAVINADDSFAGL 227
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
G R++ R G + V A A G + L +P PGLH NA
Sbjct: 228 WQSLAGRRRIV---RFGLNAGDVTAGYALHSAGCDLQLSTPAGERALHLPVPGLHNIRNA 284
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA AVA GVSL V L+ F+ V+ R + R G +++D YNANP S RAAID+
Sbjct: 285 LAATAVALSMGVSLDAVAEGLAGFAGVKGRLQRKPGRHGALLIDDTYNANPASMRAAIDV 344
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L + +GKR++++GDM ELG E H ++ +Y A +D + +G
Sbjct: 345 LA--SHSGKRLLVVGDMGELGENEAALHAELGAYAKAAGVDALHALG 389
>gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
M21/2]
gi|158444084|gb|EDP21088.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium prausnitzii M21/2]
Length = 460
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 137/376 (36%), Positives = 203/376 (53%), Gaps = 17/376 (4%)
Query: 38 GKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN 97
GK+ ++ TD+R + P F A G+ FD H+F + L +G V V N
Sbjct: 17 GKLTSDPEVALVTTDSREVKPG--CIFVAFPGERFDGHDFAARALE-QGAAYV----VVN 69
Query: 98 NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL 157
+ G + + ++ ++++ M R S++ +VGVTGSVGK+TTK M AL
Sbjct: 70 HPVPGVPEEKAILCPDSYHAMMVMGANYR-SQYHPKMVGVTGSVGKTTTKQMTYAALSGF 128
Query: 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
G + ++ GN NN +G+ +L+ ++ + + AV+EMGMS GEI LAR ARP++ ++ +
Sbjct: 129 GETI-KTEGNQNNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIITCI 187
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR-RG 276
G SH+ +LGS E++ +AK EI G VLN DDP + +P VR V+F
Sbjct: 188 GVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDPFLRKAALPAHVRPVWFSLSDEN 247
Query: 277 CDVRLVAAQVANGGLGVQVVLEKEREMVKFV--IPSPGLHLAINACAAAAVATLFGVSLA 334
DV A + G+ VLE ++E FV IP+ G H NA AA AT G
Sbjct: 248 ADV--CALSIRQETDGMSFVLE-DQEHGTFVVNIPAMGRHNVANALAAYCAATRLGCDAK 304
Query: 335 QVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394
+V LSNF R + +V G+ ++ D YNANP S +AA+ + KD C +R +LG
Sbjct: 305 RVIRGLSNFEQTGRRQK-VVDSEGVTVIEDCYNANPDSMKAALAMFKDFPCK-RRFALLG 362
Query: 395 DMLELGSTERESHEKI 410
DMLELG RE+HE++
Sbjct: 363 DMLELGELSREAHEEL 378
>gi|384135268|ref|YP_005517982.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|339289353|gb|AEJ43463.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 455
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 127/378 (33%), Positives = 198/378 (52%), Gaps = 13/378 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D R L P F A GQ D H+F+ V V+ V V+V
Sbjct: 30 VAIDHRQLQPG--HAFVAFVGQRVDGHQFVDEAFRRGASVAVVTKDVKTALGP-CVRVP- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L ++ +A + R+ +F G +VG+TGS GK+TTK M+A AL +LG V+ S N
Sbjct: 86 ----NALKAVQALARWERD-QFEGPVVGITGSNGKTTTKEMVAAALGALGPCVYTS-ANQ 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ D + VLEMGM G G+I EL +ARP I V+ ++G +H+E LGS
Sbjct: 140 NNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGSQ 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++A AK E+ + VLN DDP + + R +++G CD+R + +
Sbjct: 200 ENIALAKTELIASLPKDGIAVLNGDDPWLRRMQHRTTARILWYGLSEACDIRATSVTWSQ 259
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G+ +V + ++ + G H +NA AA AV G+SL + L +
Sbjct: 260 EGMAFEVNTPQGSATMRIRL--LGQHNVMNALAAIAVGLALGISLGDIQRGLGRVEAQRG 317
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R L+ R + +++DAYNA+P S A++++L+ +A G RV +LGDMLELG ++H
Sbjct: 318 RLRLVDVRD-VTVIDDAYNASPSSVAASLEVLERVARPGHRVAVLGDMLELGQMAVQAHR 376
Query: 409 KILSYCCDACIDLIGLVG 426
++ A +D + VG
Sbjct: 377 EVGRRVALAGVDRLLCVG 394
>gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
SG-1]
gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
SG-1]
Length = 458
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 128/383 (33%), Positives = 202/383 (52%), Gaps = 16/383 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF--V 104
G + D+R + K F G+ D H+F+ + G + + N +G +
Sbjct: 28 GGVSIDSRKI--EKGNLFIPFKGEKVDGHKFVEGAIKS-GAAASLWEKDVPNPPEGLPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE N+L +L N+A R+ +VG+TGS GK+TTK M+A L SL V ++
Sbjct: 85 IVE-----NSLQALQNLATAYRH-ELGIKVVGITGSNGKTTTKDMVANLL-SLKYKVQKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+N+ +G+ L+++ +++ ++AVLEMGMSG GEI +L+ +A P+ ++ N+G+SHL+
Sbjct: 138 QGNFNSHIGLPLTILALEKGTEVAVLEMGMSGFGEIEQLSNIALPDAAIITNIGESHLQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKV-FFGWRRGCDVRLVA 283
LGS E +A AK EI K + V ++PL+ KV FG + +
Sbjct: 198 LGSREGIATAKMEIISGLKEDGLFVYYGEEPLLKERIDKDWKFKVETFGKGTENTLYPLD 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+ + G +V E + E+ ++P G H +NA A+ VA F V ++ +
Sbjct: 258 VKTTDSGSVFKVNAEPDTEV---MLPVLGEHNVMNALASMLVAKEFDVEYKEMPEAFQQL 314
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
QMR E++ + G KI+NDAYNA+P S RAAI LL + GK++++ GDMLELG E
Sbjct: 315 KLTQMRMEMMEGKRGEKILNDAYNASPTSMRAAIGLLSGLQGYGKKILVAGDMLELGPNE 374
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
H ++ IDL+ G
Sbjct: 375 ENYHYEVGQEVQKGKIDLVFTFG 397
>gi|347530737|ref|YP_004837500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanyl ligase [Roseburia
hominis A2-183]
gi|345500885|gb|AEN95568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanyl ligase [Roseburia
hominis A2-183]
Length = 476
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 206/389 (52%), Gaps = 27/389 (6%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGN 111
D+R++ + F I G D H+FI P ++ KG + V+ Q + ++ V+
Sbjct: 38 DSRLVG--EGYLFIPIRGARVDGHDFI-PAVFEKGALAVLSEQRLEHPAGPYILVD---- 90
Query: 112 VNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171
+T ++ +A + R S +VG+TGSVGK++TK MIA L S V ++ GN NN
Sbjct: 91 -STEEAMKKIAAFYRRS-LDIKVVGITGSVGKTSTKEMIASVL-SEKYRVLKTEGNLNNE 147
Query: 172 VGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231
+G+ L++ I +AVLEMG+S GE+ LA MA+P+I V+ N+G HLE+L + + +
Sbjct: 148 IGLPLTIFKIREEHQVAVLEMGISEFGEMHRLAEMAQPDICVITNIGLCHLENLITRDGI 207
Query: 232 ARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGW-------------RRGCD 278
+AK E F+ + VLN DD + + + G VF+G +R +
Sbjct: 208 LKAKTESFEHLAPDGIAVLNGDDDKLCDKKMVNGRPAVFYGIGQEAKTAETETGSKRLAE 267
Query: 279 VRLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337
+ A V GL G + V+ + + VIP G H NA AA VA G+ ++
Sbjct: 268 KEVYATDVEAIGLEGTKAVIHTPEQQFEVVIPIAGEHNVYNALAAVCVARRLGLDAEEMK 327
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
+ + + + RS L+ ++GI I++D YNANP+S A+ID+L G+++ +LGDM
Sbjct: 328 LGIEHAHTIGGRSN-LIRKNGITIIDDCYNANPVSMMASIDVLSQ--AKGRKIAVLGDMG 384
Query: 398 ELGSTERESHEKILSYCCDACIDLIGLVG 426
ELGS E++ H + ++ ID + + G
Sbjct: 385 ELGSEEKKLHGMVGTHFAGKKIDALFVTG 413
>gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus albus 8]
gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus albus 8]
Length = 454
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 208/399 (52%), Gaps = 22/399 (5%)
Query: 29 INEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++EI ++V G +G P I TDTR + + F A+ G +FD H+F + +
Sbjct: 6 LSEIIQAVRGS---YGYPADVEVKDISTDTRTI--TEGSLFIALKGANFDGHDFAAQAME 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G V V+ + + V +T +L++ A Y R SRF LVG+TGSVGK
Sbjct: 61 A-GAVAVVTERPVDGARCLIVD-------STSQALLDAASYYR-SRFDIPLVGITGSVGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MI ++ S G ++ N NN VG+ +L+ +D AV+EMGM+ KGEI +
Sbjct: 112 TTTKEMI-WSVMSKGFKTLKTEANHNNEVGMPKTLLELDSTHQAAVIEMGMNHKGEISRM 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ +P + V+ N+G SH+E+LGS E + +AK EI + +L+ DD +++ + V
Sbjct: 171 STSCKPTVCVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILSRDDRILSKVQV- 229
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
G RK+++ D + A+ +A G+ + RE + I G H NA AA
Sbjct: 230 YGDRKIWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPARINCLGEHNVKNALAAF 289
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
V G+ A + L++F P MR ++ +G+ + D YNA P S +A++ +L +
Sbjct: 290 CVGAALGMDNADIIAGLADFRPEGMRQN-IIEENGVTYILDCYNAAPDSMKASLSVLGQV 348
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+ G+R+ +LGDMLELG H + Y ++ D++
Sbjct: 349 SVRGRRIAVLGDMLELGKGSTRYHRTVGEYVKNSKTDIL 387
>gi|433447994|ref|ZP_20411253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anoxybacillus flavithermus TNO-09.006]
gi|431999626|gb|ELK20546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anoxybacillus flavithermus TNO-09.006]
Length = 458
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 202/392 (51%), Gaps = 15/392 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + + + + G F+ HEF+ + + KG + ++ N K +
Sbjct: 30 VSTDTRTI--ERGNLYVPLKGATFNGHEFVR-QAFDKGATAALWSEHEPNAPKDVPLIFV 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ ++ L L +A + ++GVTGS GK+TTK MIA L +L V ++ GN
Sbjct: 87 DDSLVALQQL----AHAYRKQLRTRVIGVTGSNGKTTTKDMIASLLGTL-YRVQKTEGNL 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + + AV+E+GMSG GEI L+ +A P++ V+ N+G+SHL+ LGS
Sbjct: 142 NNHIGVPLTLLRLKEETEYAVVEIGMSGFGEIELLSTLAEPDVAVITNIGESHLQELGSR 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKV-FFGWRRGCDVRLVAAQVA 287
E +A AK EI + + + + + D+PL+ + V FG D + +V
Sbjct: 202 EGIATAKFEIVKGLQRDGLLIYHGDEPLLQARVQQSSLSYVQTFGMEPTNDYYPLDIRVQ 261
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
G V + F +P G H +NA AA AVA V +A + S + +
Sbjct: 262 ADGTTFTVNGWPDE---TFHMPLLGRHHVMNALAAMAVARFASVDVAHMKEGFSCLTVTK 318
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
MR+E++ G+ ++NDAYNA+P S RAA++LL + K++ I+GDMLELG E H
Sbjct: 319 MRTEVVKRHDGVTVINDAYNASPTSMRAALELLGQLTGYRKKIAIVGDMLELGEQEIAFH 378
Query: 408 EKILSYCCDACIDLIGLVGDR---VVVQCKWR 436
E+I ID + G R + Q K R
Sbjct: 379 EQIGRMLDPQKIDYVFTYGVRAKAIAEQAKKR 410
>gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
selenitireducens MLS10]
gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
selenitireducens MLS10]
Length = 456
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 201/380 (52%), Gaps = 20/380 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+CTDTR + P F I G+ F+ H+F+ + +G + + D + V
Sbjct: 30 VCTDTRNILPGS--LFIPIVGERFNGHDFVK-QAIDRGAKAALWSTKEADAPEDLPLIFV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +T+ +L +A + + ++ VTGS GK+TTK M+A E+L V ++ G
Sbjct: 87 E-----DTIEALQQLAKHYLRT-IGAKVIAVTGSNGKTTTKDMMAAVCETLW-KVQKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ + + + +LEMGMSG GEI L+++A P+ ++ N+G+SHL+ LG
Sbjct: 140 NFNNHIGMPLTILALQKDTEAVILEMGMSGFGEIELLSQIAEPDAAIITNIGESHLQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
S E++A+AK EI + K G V + D+PL+ LT + FG R R ++
Sbjct: 200 SRENIAKAKMEIAKGLKDGAPLVFHGDEPLLTPLTEQSPHPLLTFGHRDTN--RYFPQEI 257
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+ G + + E+ + I G H +NA A A A FG+ ++ + +
Sbjct: 258 VHEPNGTRFNV-GGNEIGSYFITVLGAHNVLNAIAVIATARWFGIEDHKINLGFQSVQMT 316
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR E L G+ I+NDAYNA+P S +AA++L++D+ + + V+LGDMLELG E
Sbjct: 317 GMRLEQLSGADGVTIINDAYNASPTSVKAALELVQDMKGHQNKYVVLGDMLELGEAEEMF 376
Query: 407 HEKILSYCCDACIDLIGLVG 426
H + A ID + G
Sbjct: 377 H-----FDTGAMIDPAAITG 391
>gi|374307645|ref|YP_005054076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Filifactor alocis ATCC 35896]
gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Filifactor alocis ATCC 35896]
Length = 452
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 127/378 (33%), Positives = 202/378 (53%), Gaps = 19/378 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + + F AI G+HFD + F+ L G V V+ + ++ + V
Sbjct: 30 ITTDSRKV--KQGDLFIAIKGEHFDGNHFVDMAL-DNGAVAVLSS--ISHKSPRVITVP- 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T+ +L +A R+ ++ +TGS GK+TTK MI AL S N +++ GN+
Sbjct: 84 ----DTVKALGKLASGYRD-MLDIPVISITGSSGKTTTKDMIFYALNS-QCNAYRTEGNF 137
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ D D+ +LEMGMS GEI L +A+P I V+ N+G +HLE LGS
Sbjct: 138 NNEIGMPLTILNSDEEHDVMILEMGMSSLGEIEYLCSIAKPNIGVITNIGTAHLEQLGSQ 197
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQV 286
E + AK EI D+ ++N +D + NL V + + K FG+ CD
Sbjct: 198 EKIFEAKMEITSFMHEKDILLVNGEDKFLRNLDKDVYQPMIKT-FGFSNSCDYFCKNYDY 256
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+ +++ V + IPS G H +N+ AA VA++ + L + SL +F P
Sbjct: 257 REDSTDICAMIDGLE--VNYTIPSLGKHNILNSLAALGVASVLQMDLQKAAKSLIDFQPS 314
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
++R + + + GI I+ND+YNANP S ++ + +L + N +R+ ILGDMLELG +
Sbjct: 315 KLRMQ-IEKKDGITIINDSYNANPDSVKSVLSILAE-KNNVRRIAILGDMLELGRDSDKY 372
Query: 407 HEKILSYCCDACIDLIGL 424
H +I +C LIG+
Sbjct: 373 HRQIGECAAHSCDILIGI 390
>gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Alicyclobacillus acidocaldarius LAA1]
gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Alicyclobacillus acidocaldarius LAA1]
Length = 455
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 13/378 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D R + P F A GQ D H+F+ V V+ V ++V+
Sbjct: 30 VAIDHRQVQPG--HAFVAFVGQRVDGHQFVDEAFRRGASVAVVTEDVKTALGP-CIRVQ- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L ++ +A + R+ +F G +VG+TGS GK+TTK M+A L ++G V+ S N
Sbjct: 86 ----NALQAVQALARWERD-QFEGPVVGITGSNGKTTTKEMVAAVLSAIGPCVYTS-ANQ 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ D + VLEMGM G G+I EL +ARP I V+ ++G +H+E LGS
Sbjct: 140 NNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGSQ 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++A AK E+ + VLN DDP + + R +++G GCD+R + +
Sbjct: 200 ENIALAKTELIASLPKDGMAVLNGDDPWLRRMQHRTTARILWYGMSEGCDIRATSVAWSQ 259
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G+ +V + I G H +NA AA AV G+SL + L +
Sbjct: 260 EGMSFEV--DTPHGTATMRIRLLGQHNVMNALAAIAVGQTLGLSLEDIEKGLGRVEAQRG 317
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R LV + +++DAYNA+P S A++++L+ IA G RV +LGDMLELG ++H
Sbjct: 318 RLR-LVDAGDVTVIDDAYNASPSSVAASLEVLERIARPGHRVAVLGDMLELGEMAVQAHR 376
Query: 409 KILSYCCDACIDLIGLVG 426
+ A +D + VG
Sbjct: 377 DVGRRVASAGVDRLLCVG 394
>gi|423620165|ref|ZP_17595996.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD115]
gi|401248890|gb|EJR55209.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD115]
Length = 458
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 205/411 (49%), Gaps = 29/411 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L + A+N R ++GVT
Sbjct: 63 NGAVATLWMKDVANPPENLPVIFVE----------DTLFALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ +L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVT-SLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++A P ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLACPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
N VP V FG R D V G + +E E + F IP G H
Sbjct: 232 N-RVPEMNLATETVTFGDARAND--YYPTTVTLQATGTHFKMNRE-ENISFYIPVLGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+ A+A FGV+ ++ L MR E++ SG+ I+NDAYNA+P + A
Sbjct: 288 VYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTIINDAYNASPTAMEA 347
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A L+ + +++V+LGDMLELG E + H ++ A I + G
Sbjct: 348 AFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Verrucomicrobium spinosum DSM 4136]
Length = 460
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 133/411 (32%), Positives = 218/411 (53%), Gaps = 21/411 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IA G+++ G P + CT D+R + P + F A+ G+ FDAH+F+ P++
Sbjct: 5 TLETIASYSGGRLVH-GDPAVTCTSVNTDSRKIQPG--ELFVALVGEKFDAHDFV-PQVA 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSV 141
G VI +++ N V+ G G + ++L+ + AR R + +++G+TGS
Sbjct: 61 QAGAAAVIVSRLPEN-----VEALGCGVIEVPDTLLALQQLARAYRELLNPLVIGITGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++A L V + GN+NN +G+ L+++ ++ + AVLEMGM+ GEI
Sbjct: 116 GKTSTKDLVAAVLRK-KYQVCATLGNFNNHIGLPLTILRMEEGDNCAVLEMGMNHHGEIA 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA +ARP+ ++ N+G +H+E +GS E +A+ KG + G V VLNA+D +++
Sbjct: 175 VLAGIARPDAAIITNIGVAHIEYMGSREGIAQEKGTLAAAVPHGGVVVLNANDDFSSSIA 234
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHLAINAC 320
R V G G +VA +G G L + R +V +P PG H+ NA
Sbjct: 235 ARSHARVVLAGVGEG---DVVATLTESGARGSFFSLNFDGRVVVAVHLPVPGEHMVGNAA 291
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AAAV FGV + +L + R ++ R G+ +++D+YNANP S RA + L
Sbjct: 292 LAAAVGWHFGVVPQDIAAALGEVQLTKGRVQVKFWR-GVTVLDDSYNANPDSMRAGLKTL 350
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVV 431
+ G+RV +LG M ELG SH ++ Y + +D + VG+ +
Sbjct: 351 AALQIPGRRVAVLGRMGELGPHAESSHREVGGYAAELGVDAVFSVGEEAAL 401
>gi|86160185|ref|YP_466970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85776696|gb|ABC83533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 468
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 148/413 (35%), Positives = 218/413 (52%), Gaps = 12/413 (2%)
Query: 20 CPSNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
P ++P +T +E+A + G+ L P + + TDTR LA Q F A+ G+ FDAH+
Sbjct: 3 TPRSTPHFTSDELAAATGGRWLGAPPAAVDGVSTDTRTLA--AGQLFVALKGERFDAHDH 60
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
+ V+ +TL +L +A + R RF ++GV
Sbjct: 61 LEAAAAAGAAALVVSGAWAAAHPA--PPRPALAVADTLAALGAIARFHR-CRFGIPVIGV 117
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+TT+ MIA L + G V ++ GN NN VGV L+L G+D A AV+EMGM+
Sbjct: 118 TGSNGKTTTREMIAAILATRG-PVLKTEGNLNNEVGVPLTLFGLDDAHATAVIEMGMNHP 176
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA +A+P++ VV +HLE LG++E VA AK E+++ G + V+NADD +
Sbjct: 177 GEIARLAAIAQPQVGVVTLAAPAHLEGLGTVEAVADAKAELYEGLPAGGIAVVNADDARM 236
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPS-PGLHL 315
V G R + F RG +V +V + + G++ VL V IP G H
Sbjct: 237 LKRGVASGRRMLTFASGRGRRGDVVVLEVLSQSVEGLRFVLGVGNREVPVHIPGLVGAHN 296
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
A NA AAA A G + ++ L+ PV R L SG+++V+D YNANP S A
Sbjct: 297 ARNAAAAACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANPASMSA 356
Query: 376 AIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A+++L+D+ A + V +LGDMLELGS E E+H + + A + ++ G
Sbjct: 357 ALEVLRDLAAAPGARAVAVLGDMLELGSFEAEAHRALGAEAATAGVAVLAAFG 409
>gi|423596875|ref|ZP_17572900.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD048]
gi|401218540|gb|EJR25217.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD048]
Length = 458
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 208/409 (50%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIE-NGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R D + G ++ E F +P G H
Sbjct: 233 RVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETSSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|452995435|emb|CCQ92924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium ultunense Esp]
Length = 457
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 128/397 (32%), Positives = 209/397 (52%), Gaps = 36/397 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNW-DKGFV 104
+ TDTR L P F ++G+ FD H+F+ E + KG V G + + D +
Sbjct: 14 LSTDTRTLLPG--TLFVPLSGERFDGHDFVE-EAFAKGAVSSFWRRGKSIPQSLVDAPLI 70
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSG-VLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
VE + L ++ ++ R +G +++G+TGS GK+TTK +I L+ V
Sbjct: 71 LVE-----DPLTAMQELSSTYRQE--AGCLIIGITGSNGKTTTKDLITSLLKER-YRVHA 122
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN NN++G+ L+L+ + +IAV+EMGM+ GE+ L+R+A+P++ V+ N+G++HLE
Sbjct: 123 TEGNLNNQIGLPLTLLSMPEKTEIAVVEMGMNHFGELERLSRIAKPDMAVITNIGEAHLE 182
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR-KVFFGWRRGCDVR-- 280
LG+ E +A AK EI + A++PL +P R K F G + C
Sbjct: 183 YLGTREGIATAKTEILSGMDERGILYYPAEEPL-----IPTASRFKAFTGKKISCGFTEN 237
Query: 281 -LVAAQVANGGLGVQVVLEK----------EREMVKFVIPSPGLHLAINACAAAAVATLF 329
++ +V LG++ L + E +K IP PG HLA NA A A+AT
Sbjct: 238 GMIQGRVVK-DLGLEGTLLEVLFNSSQGAGETSTLKVKIPLPGRHLAQNALYALAIATHL 296
Query: 330 GVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR 389
G++ +++ L + + +MR ++ +GI ++NDAYNA+P S RAA+ L+ + ++
Sbjct: 297 GLTPSEIEKGLRSLTHSKMRMQVEKGVNGITLINDAYNASPTSMRAALRFLEGLEGYEQK 356
Query: 390 VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ ILGDM ELG H +I ID + + G
Sbjct: 357 IAILGDMGELGPEAPALHRQIGRELYPRGIDYVFVTG 393
>gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium prausnitzii SL3/3]
Length = 460
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/376 (36%), Positives = 203/376 (53%), Gaps = 17/376 (4%)
Query: 38 GKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN 97
GK+ ++ TD+R + P F A G+ FD H+F + L +G V V N
Sbjct: 17 GKLTSDPEVALVTTDSREVKPG--CIFVAFPGERFDGHDFAARALE-QGAEYV----VVN 69
Query: 98 NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL 157
+ G + + ++ ++++ M R S++ +VGVTGSVGK+TTK M AL
Sbjct: 70 HPVPGVPEEKAILCPDSYHAMMVMGANYR-SQYHPKMVGVTGSVGKTTTKQMTYAALSGF 128
Query: 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
G + ++ GN NN +G+ +L+ ++ + + AV+EMGMS GEI LAR ARP++ ++ +
Sbjct: 129 GETI-KTEGNQNNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIITCI 187
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR-RG 276
G SH+ +LGS E++ +AK EI G VLN DDP + +P VR V+F
Sbjct: 188 GVSHIGNLGSQENICKAKLEICNGLPEGAPLVLNYDDPFLRKAALPAHVRPVWFSLSDEN 247
Query: 277 CDVRLVAAQVANGGLGVQVVLEKEREMVKFV--IPSPGLHLAINACAAAAVATLFGVSLA 334
DV A + G+ VLE ++E FV IP+ G H NA AA AT G
Sbjct: 248 ADV--CALSIRQETDGMSFVLE-DQEHGTFVVNIPAMGRHNVANALAAYCAATRLGCDAK 304
Query: 335 QVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394
+V LSNF R + +V G+ ++ D YNANP S +AA+ + KD C +R +LG
Sbjct: 305 RVIRGLSNFEQTGRRQK-VVDSEGVTVIEDCYNANPDSMKAALAMFKDFPCK-RRFALLG 362
Query: 395 DMLELGSTERESHEKI 410
DMLELG RE+HE++
Sbjct: 363 DMLELGELSREAHEEL 378
>gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus vortex V453]
gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus vortex V453]
Length = 472
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 197/381 (51%), Gaps = 20/381 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F I G+ FD HEF L D + VE
Sbjct: 30 VGTDSRTIQPG--NLFVPIVGEKFDGHEFAESVLASGAGAAFWQRDHQPVPDLPLILVE- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L ++A A S S +VG+TGS GK+T K M++ LE+ V ++ GN+
Sbjct: 87 ----DTLTALQSLAA-AYLSETSAKVVGITGSNGKTTVKDMVSALLETT-YKVHKTQGNY 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ + DI VLEMGMSG+ EI L+ +ARP++ V+ N+G++H+ LGS
Sbjct: 141 NNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSTIARPDMTVITNIGEAHMLQLGSR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGWRRGCDVRLV 282
E++ARAK EI K G + + + D+PL+ + P G+ FG + D
Sbjct: 201 EEIARAKLEIISGMKPGGLLIYHGDEPLIDQVLAEESTVKPEGLNTFTFGNQETNDDYPT 260
Query: 283 AAQVANGGLGVQVVLEKEREMVK-FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
G ++ R + F +P G H +NA AA AVA G+ + +
Sbjct: 261 GLMFHARG----IIFTSNRHAGEGFSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFA 316
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
N MR E + + G+ ++NDAYN++P + +AA+D+L D+ KR+ +LGDMLELG
Sbjct: 317 NLKLSSMRIEAVETPFGVTVLNDAYNSSPTAVKAAVDVLGDMKGYRKRIAVLGDMLELGQ 376
Query: 402 TERESHEKILSYCCDACIDLI 422
E E H +I Y DL+
Sbjct: 377 REGEFHAEIGDYLSPDNADLV 397
>gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
[Anaplasma marginale str. Florida]
gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
[Anaplasma marginale str. Florida]
Length = 476
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 218/418 (52%), Gaps = 28/418 (6%)
Query: 26 IWTINEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+W + +V G L W G I DTR L P F AI G++FD H F+ PE +
Sbjct: 14 MWCAKSMGAAVRGLCLGKDWTSLGRISIDTRTLRPG--DIFVAIKGKNFDGHCFV-PEAF 70
Query: 84 GKGCVGVIGNQVC-NNWDKG-FVQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGS 140
KG V + ++V D G V V+ +TL +L ++A R++R ++ +TGS
Sbjct: 71 SKGAVAAVVDEVSVPTADCGPLVAVK-----DTLRALHDIATMRLRDTR--AKVIAITGS 123
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK +++ AL G V+ + N+NN +G+ L + + VLEMGM+ GE+
Sbjct: 124 AGKTTTKYVLSGALSKYG-KVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEV 182
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+R+ARP++ V+ NVG +HLE S+E V AK E+F K G + VLN D A +
Sbjct: 183 DALSRIARPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKM 242
Query: 261 TV---PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
R + FG G DV++ + + + + E+ +++ + S HLA
Sbjct: 243 RAVAESYCARIISFGVGVGADVQIFRREEPSNSVTFRCFGEE----LQYNLKSGARHLAY 298
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR---SGIKIVNDAYNANPISTR 374
+ AAV F + L Q ++ F P++ R ++ V+ I +++DAYNANP+S
Sbjct: 299 SVAITAAVGHAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMV 358
Query: 375 AAIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
AAI+ L ++ A +RV ILGDMLELGS H +L + ID++ VG ++
Sbjct: 359 AAIENLSNLNHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHML 416
>gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum D str. 1873]
gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum D str. 1873]
Length = 455
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 224/414 (54%), Gaps = 29/414 (7%)
Query: 25 PIWTINEIAESVNGKIL------KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
+ EI E+++GKI K+ + TDTR + N++ F A+ G +F+A+++I
Sbjct: 2 ELLKFEEIVEAIHGKIHINSNCHKYNS---VSTDTRKI--NEDSIFIALKGDNFNANDYI 56
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVL 134
E KG I +++ N + ++ N +V NT +L+++A R S+ + +
Sbjct: 57 -VEASKKGANLCIVDEIKFNEN----DLQKNTSVILVKNTRKALLDLAELYR-SKLNIKV 110
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+G+TGS GK++TK + A AL S VF++ GN+NN +G+ L + +D DIAVLEMGM
Sbjct: 111 IGITGSTGKTSTKDLTAAALSS-KFKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGM 169
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
S EI LA++ARP+I ++ N+G SH+E+L + E++ +AK EI + ++N ++
Sbjct: 170 SDFSEIHRLAKVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSILIVNNEN 229
Query: 255 PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L+ +++ + + G+ G V A + ++ + + KF IP PG H
Sbjct: 230 DLLKDIS-SDDYKVISIGFNEG--VTYKATDIITDENHIEFTVCHNNKNEKFNIPVPGKH 286
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
+N+ A A + + ++ + N S MR +++ + IV+D YNA+P S +
Sbjct: 287 NILNSLLAIAAGRVLNIEYDKLKEGIKNLSVTSMRLDIVKGKK-FTIVDDCYNASPDSMK 345
Query: 375 AAIDLLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AAID++ I GKR + +LG M ELG + H+++ Y IDL+ VG+
Sbjct: 346 AAIDVMNTIT--GKRKIAVLGTMKELGVDSYKFHKEVAEYANSKNIDLLITVGE 397
>gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides DSM 2048]
gi|423485534|ref|ZP_17462216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BtB2-4]
gi|423491259|ref|ZP_17467903.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus CER057]
gi|423501945|ref|ZP_17478562.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus CER074]
gi|423602240|ref|ZP_17578240.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD078]
gi|423665254|ref|ZP_17640393.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM022]
gi|423671680|ref|ZP_17646684.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM034]
gi|423672516|ref|ZP_17647455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM062]
gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides DSM 2048]
gi|401151509|gb|EJQ58958.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus CER074]
gi|401161713|gb|EJQ69076.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus CER057]
gi|401226141|gb|EJR32682.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD078]
gi|401290578|gb|EJR96270.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM022]
gi|401291501|gb|EJR97172.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM034]
gi|401311622|gb|EJS16908.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VDM062]
gi|402441493|gb|EJV73448.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BtB2-4]
Length = 458
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 206/411 (50%), Gaps = 29/411 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + +NG L GI + DTR + N N + I G+ FD H F+ +
Sbjct: 5 TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIE-NGN-LYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVT 138
+ V N N FV+ ++L + A+N R ++GVT
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE----------DTLAALQMLAKNYRDQLDVKVIGVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +G
Sbjct: 113 GSNGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+
Sbjct: 172 EIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLT 231
Query: 259 NLTVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
N VP V FG R D + G ++ E F +P G H
Sbjct: 232 N-RVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKM---NRDETSSFYLPVLGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+ A+A FGV+ ++ L MR E++ + SG+ I+NDAYNA+P + A
Sbjct: 288 VYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEA 347
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 348 AFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum B1 str. Okra]
gi|429247505|ref|ZP_19210748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum CFSAN001628]
gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum B1 str. Okra]
gi|428755459|gb|EKX78087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum CFSAN001628]
Length = 462
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 224/417 (53%), Gaps = 41/417 (9%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+ +G ++VE N +L+++A Y R S+ +V +T
Sbjct: 63 GAALCIVSEI--NFSEGKVGKASYIIKVE-----NANKALLDLAKYYR-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++ L + VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVGAVL-AEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK EI + ++N DD L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV------VLEKEREMVK-FVIPSP 311
N + F ++ G D + L ++ +LE+ + K F + P
Sbjct: 234 NFESDK-----FKVYKIGTDKKF---DFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVP 285
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
G H +N+ A A + ++ + + N MR + +V G I+ND YNA+P
Sbjct: 286 GKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLD-IVKEKGFTIINDCYNASPD 344
Query: 372 STRAAIDLLKDIACNGKRVV-ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S +AAID++K+I GKR + +LG M+ELGS +H ++ Y + IDL+ +G+
Sbjct: 345 SMKAAIDVMKNIK--GKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGE 399
>gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaplasma marginale str.
St. Maries]
gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
marginale str. St. Maries]
Length = 463
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/421 (33%), Positives = 220/421 (52%), Gaps = 34/421 (8%)
Query: 26 IWTINEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+W + +V G L W G I DTR L P F AI G++FD H F+ PE +
Sbjct: 1 MWCAKSMGAAVRGLCLGKDWTSLGRISIDTRTLRPG--DIFVAIKGKNFDGHCFV-PEAF 57
Query: 84 GKGCVGVIGNQVC-NNWDKG-FVQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGS 140
KG V + ++V D G V V+ +TL +L ++A R++R ++ +TGS
Sbjct: 58 SKGAVAAVVDEVSVPTADCGPLVAVK-----DTLRALHDIATMRLRDTR--AKVIAITGS 110
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK +++ AL G V+ + N+NN +G+ L + + VLEMGM+ GE+
Sbjct: 111 AGKTTTKYVLSGALSKYG-KVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEV 169
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+R+ARP++ V+ NVG +HLE S+E V AK E+F K G + VLN D A +
Sbjct: 170 DALSRIARPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKM 229
Query: 261 TVPRGV------RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
R V R + FG G DV++ + + + + E+ +++ + S H
Sbjct: 230 ---RAVAESYCARIISFGVGVGADVQIFRREEPSNSVTFRCFGEE----LQYNLKSGARH 282
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR---SGIKIVNDAYNANPI 371
LA + AAV F + L Q ++ F P++ R ++ V+ I +++DAYNANP+
Sbjct: 283 LAYSVAITAAVGHAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPL 342
Query: 372 STRAAIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
S AAI+ L ++ A +RV ILGDMLELGS H +L + ID++ VG +
Sbjct: 343 SMVAAIENLSNLNHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHM 402
Query: 430 V 430
+
Sbjct: 403 L 403
>gi|355670274|ref|ZP_09057129.1| hypothetical protein HMPREF9469_00166 [Clostridium citroniae
WAL-17108]
gi|354816346|gb|EHF00934.1| hypothetical protein HMPREF9469_00166 [Clostridium citroniae
WAL-17108]
Length = 482
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 217/425 (51%), Gaps = 39/425 (9%)
Query: 28 TINEIAESVNGKILKWGPP----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T E+ ++V G++L WG G I D+R + F I G++ DAH+FI L
Sbjct: 5 TAAELTQAVGGRLL-WGEGEILIGHISLDSRKM--EGGDLFVPIIGENVDAHDFICQAL- 60
Query: 84 GKGCVGVIGNQVCNNWD---------------------KGFVQVEGNGNVNTLNSLVNMA 122
G G V ++ + D ++QVE +T +L +
Sbjct: 61 GNGASAVFTSRHHSPEDVQETVKAQSGDDSARRERALAAAWIQVE-----DTRKALQDFG 115
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
Y R R + LVG+TGSVGK+TT+ MIA+AL S G V+++ GN N++VGV +++ I
Sbjct: 116 AYCRAGR-TLPLVGITGSVGKTTTREMIAVAL-SAGFCVYKTPGNSNSQVGVPITIAEIP 173
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ I V+E+GMS GE+ +AR+A+ V+ N+G +H+E LGS +++ K I
Sbjct: 174 QEAQIGVIELGMSEPGEMTRIARVAQVNCAVMTNIGVTHIEQLGSQQNILEEKLHIQDNM 233
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
+ VLN DD L+ ++ G RK+ +G GC R + G V ER
Sbjct: 234 AADGLLVLNGDDGLLRDVVPENGRRKILYGLSEGCHYRGEDLHLEQGYPVFTAVHGNERV 293
Query: 303 MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIV 362
V+ + G H+ NA AA AVA +GV + L F + R ++ + + ++
Sbjct: 294 AVRLRV--MGSHMVSNALAALAVAGTYGVPMKAAAEKLEEFEGYKGRQQIF-TLDRVTVI 350
Query: 363 NDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+D+YNA+P+S +A +++L +A G+++ +L DM ELG+ H +I +Y +D +
Sbjct: 351 DDSYNASPVSMKAGLEVLCSVAGEGRKIAVLADMKELGADAPRFHREIGAYIAVHPVDQV 410
Query: 423 GLVGD 427
L+G+
Sbjct: 411 VLLGE 415
>gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaplasma centrale str.
Israel]
gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
centrale str. Israel]
Length = 463
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 216/420 (51%), Gaps = 32/420 (7%)
Query: 26 IWTINEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+W + +V G L W G I DTR L P F AI G++FD H F+ PE +
Sbjct: 1 MWCAKSMGAAVRGLCLGKDWTSLGRISIDTRTLRPG--DIFVAIKGKNFDGHCFV-PEAF 57
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYA-RNSRFSGVLVGVT 138
KG V + D+ +V G + +TL +L ++A R++R ++ +T
Sbjct: 58 SKGAVAAV-------VDEAYVPTADCGPLVAVKDTLQALHDIATMRLRDTR--AKVIAIT 108
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK +++ AL G V+ + N+NN +G+ L + + VLEMGM+ G
Sbjct: 109 GSAGKTTTKYVLSGALSKYG-KVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPG 167
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
E+ L+R+ARP++ V+ NVG +HLE S+E V AK E+F K G + VLN D A
Sbjct: 168 EVDALSRIARPDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYA 227
Query: 259 NLTV---PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
+ R + FG G DV++ + + + ++ E+ ++ + S HL
Sbjct: 228 KMRAVAESYCARIISFGVGAGADVQIFRREEPSNSITLRCFGEE----LQCNLKSGARHL 283
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR---SGIKIVNDAYNANPIS 372
A + AAV F + L Q ++ F P++ R ++ V+ I +++DAYNANP+S
Sbjct: 284 AYSVAITAAVGRAFSIDLTQARGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLS 343
Query: 373 TRAAIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
AAI+ L ++ A +RV ILGDMLELGS H +L + ID++ VG ++
Sbjct: 344 MVAAIENLSNLNHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHIL 403
>gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Candidatus Nitrospira defluvii]
gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Candidatus Nitrospira defluvii]
Length = 487
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 132/406 (32%), Positives = 201/406 (49%), Gaps = 32/406 (7%)
Query: 26 IWTINEIAESVNGKILKWGPP-GI-----------ICTDTRILAPNKNQWFFAITGQHFD 73
++T+ EI E +L PP G+ + TD+R + K F A G+ FD
Sbjct: 12 LFTVEEICE-----VLSVRPPAGVTPQDLKQRIRRVVTDSRSV--RKGDLFIAFQGERFD 64
Query: 74 AHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN-----GNVNTLNSLVNMACYARNS 128
AH F+ P+ +G V I V ++ G +TL + +A + RN
Sbjct: 65 AHTFV-PKALAQGAVCAI---VQEDYRLPPAPKRTGVPVLLGVRDTLEAYQRLATHYRN- 119
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
RF ++ +TGS GK+TTK M+A + ++ GN NNR+GV +L + A
Sbjct: 120 RFPIPVIAITGSNGKTTTKEMVAQVVAQRW-KTLKTEGNLNNRIGVPQTLFQLAPRHQAA 178
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
V+EMG+ +G+ L +ARP I V+ N+G HLE GS+E A+AK E+
Sbjct: 179 VIEMGVDQQGQTTRLCEIARPTIGVITNIGPDHLEFFGSMEGSAQAKAELLDHLPQDGAV 238
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV-ANGGLGVQVVLEKEREMVKFV 307
VLNADD L R V FG +R +V GG +V+ + +
Sbjct: 239 VLNADDEYFDYLAARAQCRVVAFGISPKAAIRAANIRVDEKGGTLFGLVVPGKSRQTEIR 298
Query: 308 IPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367
I + G H NA AAAAV + G+S + L+ F P MRS++ +S G++++ND YN
Sbjct: 299 IRAQGQHNVSNALAAAAVGYVLGLSGTAIAEGLAKFRPAAMRSQISLS-HGVQVINDCYN 357
Query: 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSY 413
ANP S +AA+ LL ++ + + LGDMLELG+ + H ++ ++
Sbjct: 358 ANPASMKAAVQLLAELGRGKRSIAALGDMLELGTDSKRMHREVGAF 403
>gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum BKT015925]
gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
botulinum BKT015925]
Length = 455
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/414 (32%), Positives = 222/414 (53%), Gaps = 29/414 (7%)
Query: 25 PIWTINEIAESVNGKIL------KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
+ EI E+++GKI K+ + TDTR + N+N F A+ G +F+A+ +I
Sbjct: 2 ELLKFEEIVEAIHGKIHINSNCHKYNS---VSTDTRKI--NENSIFVALKGDNFNANNYI 56
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVL 134
E KG I +++ +++G +Q N +V NT +L+++A R S+ + +
Sbjct: 57 -VEASKKGANLCIVDEI--KFNEGDLQ--ENTSVILVENTRKALLDLAELYR-SKLNIKI 110
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+G+TGS GK++TK + A AL S VF++ GN+NN +G+ L + +D +D+AVLEMGM
Sbjct: 111 IGITGSTGKTSTKDLTAAALGS-KFKVFKTQGNFNNEIGLPLMIFNLDNTLDVAVLEMGM 169
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
S EI LA++ARP+I ++ N+G SH+E+L + E++ +AK EI + ++N ++
Sbjct: 170 SDFSEIHRLAKVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNNEN 229
Query: 255 PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L+ +++ + G+ G + + V E E KF IP PG H
Sbjct: 230 DLLKDIS-SNDYNIINIGFNEGVAYKATDILTDENHIEFTVCHNDENE--KFNIPVPGKH 286
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
+N+ A A + + ++ + N S MR + +V IV+D YNA+P S R
Sbjct: 287 NILNSLLAIAAGRVLNIEYDKLKDGIKNLSVTSMRLD-IVKGEKFTIVDDCYNASPDSMR 345
Query: 375 AAIDLLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AAID++ I GKR + +LG M ELG + H+++ Y +DL+ VG+
Sbjct: 346 AAIDVMNTIK--GKRKIAVLGTMKELGVDSYKFHKEVAEYADSKNVDLLITVGE 397
>gi|429735411|ref|ZP_19269376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. oral taxon 138 str. F0429]
gi|429158919|gb|EKY01445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. oral taxon 138 str. F0429]
Length = 467
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 194/367 (52%), Gaps = 14/367 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F A+ G++FD +F + L +I + + K + +G
Sbjct: 30 ITTDTRKI--SDGDLFIALRGENFDGADFAADALNKGAAAVLIAEPISDPVQKALKKAKG 87
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+TL + +A YA +F +V +TGS GK+TTK + A L G V ++
Sbjct: 88 AVLTVADTLTAYQAIA-YAWRIKFDIPVVAITGSNGKTTTKDLTAAVLSGRGA-VCRTEA 145
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN VG+ L+L+GI AV+E+GM G G+I LA +A P + +V NV + H+E LG
Sbjct: 146 NYNNEVGLPLTLLGITAEDSAAVVEIGMRGMGQIAALAPVAAPNVGIVTNVCEVHMELLG 205
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADD--PLVANLTVPRGVRKVFFGWRRGCDVRLVAA 284
S+E++A+AK E+ + G +LNADD GVR + +G DVR A
Sbjct: 206 SIENIAKAKAELVEAIPAGGTVILNADDARVAAMRARAAEGVRVLTYGISADADVRAEAL 265
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ A GG V ER + IP G H NA AA A + G++ ++ + LS+ +
Sbjct: 266 RCAAGGSQFMVTWANERH--DYSIPLAGRHNVSNALAALAAGFVIGLTPQEMQMGLSHLA 323
Query: 345 PVQMRSELLVSRSGI-KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
+MR E V G + +NDAYNA+P S RAAI+ + G+++ +LGDMLELG+
Sbjct: 324 ASKMRYE--VHEVGAWRFINDAYNASPSSMRAAIETTAALYA-GRKIAVLGDMLELGAAA 380
Query: 404 RESHEKI 410
E+H I
Sbjct: 381 EEAHRDI 387
>gi|416350640|ref|ZP_11680942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum C str. Stockholm]
gi|338196205|gb|EGO88413.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum C str. Stockholm]
Length = 455
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 223/408 (54%), Gaps = 29/408 (7%)
Query: 31 EIAESVNGKIL------KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
EI E+++GKI K+ + TDTR + N++ F A+ G +F+A+++I E
Sbjct: 8 EIVEAIHGKIHINSNCHKYNS---VSTDTRKI--NEDSIFIALKGDNFNANDYI-VEASK 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG I +++ N + ++ N +V NT +L+++A R S+ + ++G+TGS
Sbjct: 62 KGANLCIVDEIKFNEN----DLQKNTSVILVKNTRKALLDLAELYR-SKLNIKVIGITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK + A AL S VF++ GN+NN +G+ L + +D DIAVLEMGMS EI
Sbjct: 117 TGKTSTKDLTAAALSS-KFKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGMSDFSEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++ARP+I ++ N+G SH+E+L + E++ +AK EI + ++N ++ L+ ++
Sbjct: 176 HRLAKVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSILIVNNENDLLKDI 235
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ + + G+ G V A + ++ + + KF IP PG H +N+
Sbjct: 236 S-SDDYKVISIGFNEG--VTYKATDIITDENHIEFTVCHNNKNEKFNIPVPGKHNILNSL 292
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
A A + + ++ + N S MR +++ + IV+D YNA+P S +AAID++
Sbjct: 293 LAIAAGRVLNIEYDKLKEGIKNLSVTSMRLDIVKGKK-FTIVDDCYNASPDSMKAAIDVI 351
Query: 381 KDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
I GKR + +LG M ELG + H+++ Y IDL+ VG+
Sbjct: 352 NTIT--GKRKIAVLGTMKELGVDSYKFHKEVAEYANSKNIDLLITVGE 397
>gi|406989178|gb|EKE08984.1| hypothetical protein ACD_16C00227G0004 [uncultured bacterium]
Length = 463
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 209/403 (51%), Gaps = 21/403 (5%)
Query: 24 SPIWTINEIAESVNGK-ILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+P+WT E+ + G+ W G+ DTR L K F A+ G+ D F+ E
Sbjct: 6 TPLWTSKEVDQITGGESTSPWVCFGL-SIDTRTL--EKGDLFIALQGEKGDGTPFLQ-EA 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ KG G + + VE +TL SL +A AR S + +TGSVG
Sbjct: 62 FDKGAAGAMVPCAAKT-SLPLLVVE-----DTLASLGKLAI-ARRQMCSATRIAITGSVG 114
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK M+ AL+ G S ++NN GV L+L + V E+GM+ GEIL
Sbjct: 115 KTSTKDMLKWALKDQG-PTHGSIASYNNHWGVPLTLARMPETTKFGVFEVGMNHAGEILP 173
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVAN 259
L++M +P+I ++ V ++H E + ED+ARAK E+F + G +LN D+ L+++
Sbjct: 174 LSQMIKPQIVIITTVVEAHTEFFKTEEDIARAKAEVFDGMEAGGSVLLNGDNIYFSLLSH 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
L +G++ FG + D R V+ + QV ++ + + +++ +P PG H A+N+
Sbjct: 234 LASEKGLKVSTFGKDKTADFRFVSWEGEEE--KSQVTVDIQGKQLRYTLPMPGFHWAMNS 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A L G +AQ SL+ P R + + +++++YNANP S AAI +
Sbjct: 292 LAALGGAFLAGADVAQAACSLATIKPSYGRGQWY--KGDFTVIDESYNANPASMHAAITV 349
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
L + G+++ ++GDM ELGS ++ HE++L + IDL+
Sbjct: 350 LGK-SGTGRKIAVIGDMRELGSLSQKRHEELLDCLLENKIDLV 391
>gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus carnosus subsp. carnosus TM300]
gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus carnosus subsp. carnosus TM300]
Length = 454
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/388 (31%), Positives = 199/388 (51%), Gaps = 25/388 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + ++N F G++ D H F+ L G N K ++EG
Sbjct: 29 VSIDSRNI--DENNLFVPFKGENTDGHRFVEQALEDGA-----GAAFYQNDAKPDHEIEG 81
Query: 109 -----NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ + L L N + ++ VTGS GK+TTK MI L+ V +
Sbjct: 82 PIIWVDDTLLALQELAKAYLKHVNPK----VIAVTGSNGKTTTKDMIESVLKP-AFKVKK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A P+I V+ N+G+SH++
Sbjct: 137 TQGNYNNEIGMPLTILQLDEDTEISILEMGMSGFHEIELLSEIAHPDIAVITNIGESHMQ 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLV 282
LGS E +ARAK EI K G V + + D+PL+ ++ + + G + D +V
Sbjct: 197 DLGSREGIARAKFEIVSGLKPGGVFIYDGDEPLLKPHVDTLKDTEAISIGLAQ--DNSVV 254
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ + +G+ L + IP G H NA A ++ + G+S ++ ++S
Sbjct: 255 CSVEQHDAMGIAFTLNTNEH---YQIPILGTHNMRNAAIAISIGKILGLSYEEIQENISK 311
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
MR EL + S I ++NDAYNA+P S +AAID L A +G++++IL D+LELG
Sbjct: 312 VKLTGMRMELHRTDSNISVINDAYNASPTSMKAAIDTLA--AMDGRKILILADVLELGEN 369
Query: 403 ERESHEKILSYCCDACIDLIGLVGDRVV 430
E H + Y D I+L+ GD V
Sbjct: 370 SAEMHASVGDYLQDKGINLLLTFGDEAV 397
>gi|350270645|ref|YP_004881953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillibacter valericigenes Sjm18-20]
gi|348595487|dbj|BAK99447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillibacter valericigenes Sjm18-20]
Length = 460
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 215/410 (52%), Gaps = 26/410 (6%)
Query: 28 TINEIAESVNGKILKWGP----PGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
T+ EI +V G + W P P + +CTD+R L F G++FD H+FI
Sbjct: 5 TVREIEAAVGG--VWWNPRKDAPAVSAVCTDSRDLV--SGCLFVPWKGENFDGHDFIDKA 60
Query: 82 LYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L G G + ++ + D+ +++V+ +T +L +A R+ RF + +TG
Sbjct: 61 LE-SGAAGTLCARLPGDLRPDRFYIKVD-----DTRLALKALASAYRD-RFDIPFIQITG 113
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK MIA L S G+ + ++ N+NN +G L++ + AV+E GM+ GE
Sbjct: 114 SVGKTTTKEMIAAVL-SAGLKILKTPENFNNDIGTPLTMFRLMPEHQAAVIETGMNHFGE 172
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L + RP+I V+ N+GD+H+E LGS E + +AK EIF K G VLN DD L+
Sbjct: 173 IHYLGELVRPDIAVISNIGDAHIEFLGSREGILKAKSEIFDFLKPGGTAVLNGDDALLDT 232
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGLHLAIN 318
L +P + G C +R+ V++ GL G+ + E+++ I +PG HL
Sbjct: 233 LELPFTTLRC--GQSEHCGIRVT--DVSDRGLDGITCRVTTEKDVYDLTINAPGQHLVYC 288
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A A A+A + G++ Q+ +++F V R E++ I+ND YNANP S A ++
Sbjct: 289 ASMAVAIAEVLGLNHQQIVSGVASFQGVGSRMEIVRLPGRRIILNDCYNANPQSVAAGLE 348
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
+L + ++ ILGDM ELG +H I + ID++ +G +
Sbjct: 349 VLAK-STGSHKLAILGDMGELGDHGEAAHYNIGALAAMLGIDMVIAIGQK 397
>gi|410452639|ref|ZP_11306603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus bataviensis LMG 21833]
gi|409934121|gb|EKN71037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus bataviensis LMG 21833]
Length = 459
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 196/386 (50%), Gaps = 23/386 (5%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G+ +I A N F G+H D H+++ + + W K
Sbjct: 29 GVTIDSRKIKAGN---LFIPFKGEHADGHKYVVESIRNGAAAAL--------WQKDVPNA 77
Query: 107 EGNGNVNTLNS-LVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ + ++ LV + AR R +VG+TGS GK+TTK M A L S NV +
Sbjct: 78 PADLPIIIVDDCLVALQELARKYRQELPVKVVGITGSNGKTTTKDMTA-GLLSTQYNVQK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++G++ DIAVLEMGMSG+GEI L ++A P+ ++ N+G+SHL
Sbjct: 137 TEGNYNNHIGLPLTVLGLNEDTDIAVLEMGMSGRGEIEFLTKLACPDAVIITNIGESHLL 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---GVRKVFFGWRRGCDVR 280
LGS E +A AK EI Q + G + VL+ D+PL+ + R V FG D+
Sbjct: 197 DLGSREGIAEAKLEILQGLRDGGLAVLHGDEPLLME-RIHRYKGNVNVQTFGRNETNDLY 255
Query: 281 LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
G ++ + V F +P G H +NA A+ +A F + ++ L
Sbjct: 256 PTEITQMEQGNSFKINVAD----VVFKLPVLGTHNILNALASMLIAHYFSIPFEKMNAGL 311
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
+ MR EL+ G KI+NDAYNA+P S AAI+L+ ++ +++++LGDMLELG
Sbjct: 312 AGIKLTNMRMELVEGEHGEKIINDAYNASPTSMMAAIELVSNLQGYKRKILVLGDMLELG 371
Query: 401 STERESHEKILSYCCDACIDLIGLVG 426
E + H +I S ID + G
Sbjct: 372 PQEEQYHLQIGSGLQADKIDYLFTFG 397
>gi|356668600|gb|AET35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[uncultured bacterium]
Length = 468
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 191/351 (54%), Gaps = 14/351 (3%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F I G+ D H FI P ++ +G V+ + +V VE +T +++ +A
Sbjct: 52 LFIPIKGERVDGHRFI-PTVFEQGAAIVLSEHELTDPAGPYVLVE-----STTDAMKKLA 105
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+ R S +VG+TGSVGK++TK MI+ LE +V ++ GN+NN +G+ L++ GI
Sbjct: 106 AFYRKS-LDIKVVGITGSVGKTSTKEMISSVLEQ-KYSVHKTAGNFNNEIGLPLTIFGIR 163
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ +AVLEMG+S GE+ L+ M+ P++ V+ N+G HLE LG+ + V +AK E F+
Sbjct: 164 ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLGNRDGVLKAKTECFEHM 223
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR--LVAAQVANGGL-GVQVVLEK 299
V VLNADD +A + G +++G DV + + N G G++
Sbjct: 224 MPDAVAVLNADDNKLATVQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVT 283
Query: 300 EREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI 359
I PG H NA AAAAV G+++A++ + + R+ + + G+
Sbjct: 284 PEGEFDAQIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKSGIEKAETIAGRTNFIKTH-GM 342
Query: 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+++D YNANP+S +++I++L G+ + +LGDM ELGS E++ H ++
Sbjct: 343 TVIDDCYNANPVSMKSSIEVLSH--AKGRTIAVLGDMGELGSDEKKLHHEV 391
>gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfococcus oleovorans Hxd3]
gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfococcus oleovorans Hxd3]
Length = 472
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 202/381 (53%), Gaps = 6/381 (1%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R L K F AI GQ D H+FI + +G GV+ +Q +
Sbjct: 24 ISIDSRTLG--KGDLFVAIQGQQHDGHDFID-RVLAQGAGGVMIDQAHASRINTPRATGR 80
Query: 109 NGNVNTLNSLVNMACYARNSRFS--GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
V +++V + AR+ R S + +TG+ GK++TK M A+ V + G
Sbjct: 81 GARVVVKDTVVALGDLARHRRRSVNPRVAAITGTNGKTSTKEMAAMVCGRR-YRVLATTG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+L+ +++ +A+LEMGM+ GEI LA++ P++ VVLNVG HLE +
Sbjct: 140 NFNNEIGLPLTLLRLEKGHQVAILEMGMNAPGEIGRLAKICEPDMGVVLNVGAGHLEGVE 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+++ VARAK E+ + D ++NADD V + R V +G R+ D+ + +
Sbjct: 200 NIDGVARAKAELLEALTDKDTAIVNADDMRVMKMAQKVRGRVVTYGMRQKADITAASVRR 259
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+G + + L E V +P+ G + NA AAAA+ G+S ++ L NFSPV
Sbjct: 260 QDGRVCFDLCLSATDEQVAVALPASGTFMVSNALAAAAIGAGLGLSAPEIKAGLENFSPV 319
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R + +R+G +V+D YNANP S +AA+ L+++ G+ ++I+GDM ELG
Sbjct: 320 PGRMTITQTRAGFTLVDDTYNANPESMKAALAGLRELKGAGRGILIMGDMFELGDHAPVM 379
Query: 407 HEKILSYCCDACIDLIGLVGD 427
H K ++ +D + + G+
Sbjct: 380 HGKTGVMAAESGVDRLYVTGE 400
>gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
15579]
gi|187773515|gb|EDU37317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sporogenes ATCC 15579]
Length = 462
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 219/410 (53%), Gaps = 27/410 (6%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + K
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVQTAI-EK 62
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ N+DK ++VE T +L+++A Y + S+ +V +T
Sbjct: 63 GASLCIVSEI--NFDKEKIGKSSYVIKVES-----TNKALLDLAKYYK-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK E+ + ++N D+ L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEVTDFFSKDSILIVNGDNDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
N + + G + D + + V+ + E F + PG H +N
Sbjct: 234 NFESDK-YKVCKIGTEKKFDFNGENLNLEEESIEFDVLEQGETAYKGFNVNVPGKHNVLN 292
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
+ A A + ++ + + N MR + ++ G I+ND YNA+P S +AAID
Sbjct: 293 SLTAIACGKVLDMNYEDIQTGIKNLKATSMRLD-IIKEKGFTIINDCYNASPDSMKAAID 351
Query: 379 LLKDIACNGKRVV-ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
++K++ GKR + +LG M ELG+ +H ++ Y + IDL+ +G+
Sbjct: 352 VMKNVK--GKRTIALLGSMRELGNEGYRAHREVSEYAKEKGIDLLFSIGE 399
>gi|427412446|ref|ZP_18902638.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Veillonella ratti ACS-216-V-Col6b]
gi|425716253|gb|EKU79237.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Veillonella ratti ACS-216-V-Col6b]
Length = 458
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 193/370 (52%), Gaps = 30/370 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVG-------VIGNQVCNNWDK 101
+ TDTR + + F A+TG FD H+F+ P+ G +G I N +C
Sbjct: 30 VSTDTRTI--EEGSLFVALTGDTFDGHDFL-PQAQANGALGALVKPGHTIKNLIC----- 81
Query: 102 GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
V+VE + L + +A Y R RF +V VTGS GK+TTK MIA L + NV
Sbjct: 82 --VEVE-----SPLLAYQQLANYHRR-RFDIPVVAVTGSSGKTTTKEMIAAVL-GIKFNV 132
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221
++ N+NN +G+ +L+ + + ++EMGM G G+I ELAR+A P + V+ NVG+SH
Sbjct: 133 LKTEKNFNNEIGLPKTLLQLTADHEACIVEMGMRGLGQIDELARIAEPMVGVITNVGNSH 192
Query: 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281
+E LGS E++A+AK E+ Q +LN DD V + + +++G + +
Sbjct: 193 IELLGSRENIAKAKSELIQHIPATGTAILNEDDEFVRQMGNLTDGKIIYYGIKEKATISG 252
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
+ G++ E+ +P G H +A AA +V GVS ++ +L
Sbjct: 253 FNLRYKKD--GIKFTCRSFDEVFDVFLPMIGEHNVYDALAAISVGRALGVSSQKIAKALG 310
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELG 400
F + MR E +VS ++NDAYNANP+S +I L + +GKR + +LGDMLELG
Sbjct: 311 AFKGMSMRQE-IVSFGDFVVLNDAYNANPMSMAESIKALGQL--DGKRKIAMLGDMLELG 367
Query: 401 STERESHEKI 410
E H +I
Sbjct: 368 EFSEEHHREI 377
>gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
heliotrinireducens DSM 20476]
gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
heliotrinireducens DSM 20476]
Length = 458
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 134/392 (34%), Positives = 204/392 (52%), Gaps = 30/392 (7%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG-------FV 104
D+R + P + A+ GQ D H+F+ + ++ + + + V
Sbjct: 18 DSRTVQPG--YVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAAHAAVV 75
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ- 163
+V+ + ++ ++A R+ +VGVTGSVGK+TT+S+I L S F+
Sbjct: 76 KVD-----DVARAISDLAAAWRDV-LKAEIVGVTGSVGKTTTRSLIYGVLAS----AFEA 125
Query: 164 --SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221
+ GN+NN +G+ +L+ + + ++ VLEMGM G G+I +LAR+ARP+ V+ NVG SH
Sbjct: 126 DCTKGNFNNELGMPYTLLQTEPSCEVLVLEMGMDGLGQIADLARIARPKYGVITNVGVSH 185
Query: 222 LESLGSLEDVARAKGEIFQESKLGD-VCVLNAD----DPLVANL-TVPRGVRKVFF-GWR 274
LE LG+ +++ARAK E+ + G+ V L AD D ++ + V RG+R V F G
Sbjct: 186 LERLGTRDNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGIRIVRFDGTA 245
Query: 275 RGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLA 334
DV V + G L E + G+H NACAAAAV FG++L
Sbjct: 246 ENSDVYATDIAVDDQGR-PSFTLNARGESASCTLSVRGVHNVTNACAAAAVGLEFGIALD 304
Query: 335 QVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394
QV +LS P R L S G + +DAYNA+P S AA+++L + +G+R+ +LG
Sbjct: 305 QVAAALSGVEPESGRQALKRSSRGFLVFDDAYNASPESMAAALNVLASFSASGRRIAVLG 364
Query: 395 DMLELGSTERESHEKILSYCCDACIDLIGLVG 426
DM ELGS E E H A ID++ VG
Sbjct: 365 DMGELGSAEVEGHINTGKAAAQAGIDMLVCVG 396
>gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A3 str. Loch Maree]
gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum A3 str. Loch Maree]
Length = 462
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 221/415 (53%), Gaps = 41/415 (9%)
Query: 31 EIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
EI ++VNG+++ G + TDTR + K F A+ G++F+ + F+ + KG
Sbjct: 8 EIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNNFVEMAI-EKGA 64
Query: 88 VGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
I +++ N+ +G ++VE NT +L+++A Y R S+ +V +TGS
Sbjct: 65 ALCIVSEI--NFSEGKIGESSYVIKVE-----NTNKALLDLAKYYR-SKLDIKVVAITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+ EI
Sbjct: 117 TGKTSTKDLVGAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
+A A+P+I ++ N+G SH+E+LGS E++ +AK E+ + ++N DD ++N
Sbjct: 176 HNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEVTDFFCKDSILIINGDDDFLSNF 235
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV------VLEKEREMVK-FVIPSPGL 313
+ F ++ G D + L ++ +LE+ + K F + PG
Sbjct: 236 ESDK-----FKVYKIGTDKKF---DFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGK 287
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H +N+ A A ++ + + N MR + +V G I+ND YNA+P S
Sbjct: 288 HNVLNSLTAIACGRALDINYKDIQTGIKNLKATSMRLD-IVKEKGFTIINDCYNASPDSM 346
Query: 374 RAAIDLLKDIACNGKRVV-ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+AAID++K+I GKR + +LG M ELG+ +H ++ Y + IDL+ +G+
Sbjct: 347 KAAIDVMKNIK--GKRTIALLGSMRELGNEGYRAHREVSEYAREKGIDLLFSIGE 399
>gi|425738294|ref|ZP_18856559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus massiliensis S46]
gi|425479967|gb|EKU47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus massiliensis S46]
Length = 451
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 201/384 (52%), Gaps = 23/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQ 105
+ D+R + K F G++ D H FI + +G G G+ DK +
Sbjct: 29 VTIDSRQI--EKGMLFIPFKGENVDGHRFIQ-QAFGDGAGASFYEKGSTYEVPKDKPVIY 85
Query: 106 VEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A Y ++ + +V VTGS GK+TTK +I L S V ++
Sbjct: 86 VE-----DTLTALQQLAKAYLKH--VNPKVVAVTGSNGKTTTKDIIENVLAST-FKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+++ +D+ ++++LEMGMSG EI L+ +A+P++ V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTILDLDQDTEVSILEMGMSGFNEIELLSDIAQPDVAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-VPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + V + D+PL+ L G KV G V+
Sbjct: 198 LGSREGIAKAKFEIVSGLKSDGLLVYDGDEPLLEPLVREADGFHKVSVGIESDNKVQCRI 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
AQV G+ +V + + + G H NA A ++ F V V +LS
Sbjct: 258 AQVHESGITFEV-----NDKTAYDLTILGAHNMKNATYAIVISEFFNVPQEAVQTNLSKL 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E +G K++NDAYNA+P S +AAID L ++ G R++ILGD+LELGS
Sbjct: 313 QLTGMRMEQSTLDNGAKVINDAYNASPTSMKAAIDTLANM--KGNRILILGDVLELGSDS 370
Query: 404 RESHEKILSYCCDACIDLIGLVGD 427
+ H + +Y ID++ GD
Sbjct: 371 QAMHASVGTYLDGKGIDVLYTFGD 394
>gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
Length = 496
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 138/423 (32%), Positives = 221/423 (52%), Gaps = 21/423 (4%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEF 77
+P+WT++++ + G++ WG +I TD+R + F A+ G++FDA +F
Sbjct: 30 QNPVWTLSQVLLATGGRL--WGDRTQAAFRLISTDSRTI--EAGDLFVALRGENFDAQQF 85
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
++ E KG G++ Q V V +TL +L ++A Y R ++ +
Sbjct: 86 VA-EAVAKGAAGLVLEQPPVE----PVPVPVVLVPDTLAALGDLAHYRRCRMRELQVLAI 140
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+T K M A L+ V ++ GN NN VG+ LSL+ ++ + AVLEMGM+
Sbjct: 141 TGSSGKTTVKEMTATILQRRQ-QVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRP 199
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI +A +A P+I + NV ++HL L ++ VARAKGE+F V+N DD V
Sbjct: 200 GEIARMAEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRV 259
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L G +++ +G R VR + + G+ + ++ R+ V+ + + G H
Sbjct: 260 RRLAARTGQQRITYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVR--LAALGEHNV 317
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
NA AAAA+AT GVS A++ L+ + P R +LL +G+K+++D YNANP S AA
Sbjct: 318 SNALAAAALATAAGVSPAEIAAGLAAYRPFAKRMQLLPFIAGLKLIDDTYNANPSSMLAA 377
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD---RVVVQC 433
+ + ++ + V +LGDMLELG +H I D + VG+ +VV
Sbjct: 378 LATVHNLRRQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVAAA 437
Query: 434 KWR 436
+ R
Sbjct: 438 RHR 440
>gi|365132410|ref|ZP_09342176.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Subdoligranulum sp. 4_3_54A2FAA]
gi|363616916|gb|EHL68336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Subdoligranulum sp. 4_3_54A2FAA]
Length = 456
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 197/380 (51%), Gaps = 14/380 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R P F I G+ D H++ L V+ V + VQV
Sbjct: 25 VVTDSREAGPG--SLFVCIRGERVDGHDYALRALEAGAAGVVVQRPVPGVPPEKCVQVP- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L++++ + R + +S +L GVTGSVGK+TTK + G ++ GN
Sbjct: 82 ----DALDAMIRLGANYR-ALYSPLLAGVTGSVGKTTTKEFCYAVFSAFG-KTLRTQGNQ 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ +L +D++V+ AV+EMGM G GEI +L A+P V+ +G SHLE LG+
Sbjct: 136 NNEIGMPNTLFRLDKSVEYAVVEMGMQGLGEIRKLTLAAKPAGAVITCIGRSHLEQLGTR 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR-GCDVRLVAAQVA 287
E++ RAK EI + G V+N DD + V + KV F DVR A +
Sbjct: 196 ENILRAKLEICEGLPQGAPLVVNGDDDYLPGAAVRPDLEKVLFAVENPDADVR--ALDIV 253
Query: 288 NGGLGVQ-VVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+G G + + +K + IP+ GLH NA +A A+AT G++ A +L+N+
Sbjct: 254 SGAEGTRFTIADKAHGSLPAYIPAMGLHNVRNALSAYALATRLGLAPAAAAAALANYQTT 313
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R +V G+ ++ D YNANP S RAA+ LK+ G+RV +LGDM ELG+ R++
Sbjct: 314 GHRQH-VVEHGGVTVIEDCYNANPDSMRAALLTLKEYPVRGRRVAVLGDMFELGAITRQA 372
Query: 407 HEKILSYCCDACIDLIGLVG 426
H ++ + +DL+ VG
Sbjct: 373 HAEVGALAARCGVDLLLTVG 392
>gi|423556775|ref|ZP_17533078.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MC67]
gi|401194090|gb|EJR01082.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MC67]
Length = 458
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 206/409 (50%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ ++ + V+G L GI DTR + K + I G+ FD H F+ +
Sbjct: 5 TLKQVEKMVDGTGLAEKYEGITIQGASIDTRKI--EKGNLYVPIQGERFDGHAFVDKAVE 62
Query: 84 GKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V N N FV+ +TL +L +A R+ + +VGVTGS
Sbjct: 63 NGAIATLWMKDVENPPENLPVIFVE-------DTLAALQMLAKNYRD-QLDVKVVGVTGS 114
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++ L + V ++ GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI
Sbjct: 115 NGKTSTKDIVTSILAT-KFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEI 173
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ARP ++ N+G++HL LGS E +A AK EI + G V V N D+PL+ N
Sbjct: 174 EFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN- 232
Query: 261 TVPR---GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
VP V FG R + + G ++ E + F +P G H
Sbjct: 233 RVPEMNLAAETVTFGDARANNYYPTTVTLQATGTHFKM---NRDETLSFYLPVLGKHNVY 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
N A+ A+A FGV+ ++ L MR E++ SG+ I+NDAYNA+P + AA
Sbjct: 290 NTLASMAIAKNFGVTWEEMKKGLVTLQMTGMRMEIVKKDSGLTIINDAYNASPTAMEAAF 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L+ + K++V+LGDMLELG+ E + H ++ A I + G
Sbjct: 350 HLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYG 398
>gi|422346530|ref|ZP_16427444.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium perfringens WAL-14572]
gi|373226075|gb|EHP48402.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium perfringens WAL-14572]
Length = 453
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 219/412 (53%), Gaps = 29/412 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++ E +
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYV-LEAF 60
Query: 84 GKGC-VGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG + ++ C+ D ++VE NT +L+++A + R + +VG+T
Sbjct: 61 NKGAKIAIVDEVKCDLNELKEDVALIKVE-----NTGRALMDLAKFYR-EKLGLKVVGIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G
Sbjct: 115 GSAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLG 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA +A P++ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 174 QIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLG 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHL 315
L P K+ G + ++ A +A L + + EKE E F + PG H
Sbjct: 234 AL--PEAEYKI-VKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+A GVS ++ L N MR E L+ + G I+ND YN++P++ ++
Sbjct: 288 ISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKS 346
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AID++K+I +R+ +LG M ELG E+HE+I Y + I+ + +GD
Sbjct: 347 AIDVMKNIEGK-RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCLGD 397
>gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
gi|167661645|gb|EDS05775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium scindens ATCC 35704]
Length = 457
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 213/382 (55%), Gaps = 17/382 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + D+R + K+ F AI G++ +AH+FI P+ KG + VI ++ + D ++ V
Sbjct: 29 GGVVIDSRKV--QKDYLFVAIDGENVNAHQFI-PDTIEKGALCVISHEDLGDTDFSYILV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E G +L+++A R+S F +VG+TGSVGK++TK MIA ++ + V ++ G
Sbjct: 86 ESTGQ-----ALLDIAKLYRDS-FDVKVVGITGSVGKTSTKEMIA-SVVAQKYKVHKTIG 138
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN G+ L++ ++ +A+LEMG++ GE+ L+ +A P+I V+ N+G +HLE
Sbjct: 139 NFNNEWGLPLTIFELNEDHQVAILEMGVNHFGEMRRLSSVASPDICVITNIGVAHLEFFK 198
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+ E + + K ++ Q+ K G + N DD L++ +G + FG C + A +
Sbjct: 199 TREGILQEKSKMIQDMKDGGTIIFNGDDDLLSQAGPIKGATPILFGLGDNC--QFYADNI 256
Query: 287 ANGGL-GVQVVLEKEREM-VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
GL G + E + V+P PG H+ NA A AAV ++ ++ +
Sbjct: 257 QPMGLRGTSCTIHLPDEYSFECVVPLPGTHMISNALAGAAVGYTLHLTSEEIKAGIEGLP 316
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
+ R+ ++ + I I++D YNANP+S +AAID+L D+A G++V +LG+M ELG+ E+
Sbjct: 317 SIPGRNNIIKTDRLI-ILDDCYNANPVSMKAAIDVL-DMAI-GRKVAVLGNMGELGNNEK 373
Query: 405 ESHEKILSYCCDACIDLIGLVG 426
H ++ Y IDL+ +G
Sbjct: 374 VLHREVGEYAAAHGIDLVCGIG 395
>gi|402303446|ref|ZP_10822541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. FOBRC9]
gi|400378690|gb|EJP31542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. FOBRC9]
Length = 468
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 205/395 (51%), Gaps = 19/395 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
T +EI + G++L G I TDTR + F A+ G+ FD +F +
Sbjct: 3 FMTWDEIRAATGGRLLLGKMRGNDAFAGITTDTRKV--QAGDLFVALRGEKFDGADFAAG 60
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGN--GNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L ++ V + K ++ G G +TL + +A +A +F +V VT
Sbjct: 61 ALRAGAVAVMLPEPVSDAHRKELDRMSGAVIGVPDTLAAYQQIA-HAWRMKFDIPVVAVT 119
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK + A AL G V ++ N+NN +G+ L+L+G+ AV+EMGM G+G
Sbjct: 120 GSNGKTTTKELTAAALSGRGA-VCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRG 178
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I LA +A P + +V NVG++H+E LGS+E++ARAK E+ + G +LNADD VA
Sbjct: 179 QIAALAAIAAPTVGIVTNVGETHMELLGSIENIARAKSELVEAIAPGGTVILNADDARVA 238
Query: 259 NL--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+ GVR + +G R D+R A + A V ER + +P G H
Sbjct: 239 AMRAQAADGVRILTYGIRAKADIRAQALRSACNETRFMVTYGGERH--DYAVPLLGRHNV 296
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI-KIVNDAYNANPISTRA 375
NA AA A G+S ++ LS +P +MR E V G +NDAYNA+P S RA
Sbjct: 297 YNALAALAAGFSLGLSPQEMQAGLSRLAPPKMRYE--VHHVGAWTFINDAYNASPASMRA 354
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
A++ + G+R+ +LGDMLELG+ E H +
Sbjct: 355 ALETTARL-YPGRRIAVLGDMLELGAASAEGHRSV 388
>gi|336420660|ref|ZP_08600822.1| hypothetical protein HMPREF0993_00199 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336005892|gb|EGN35935.1| hypothetical protein HMPREF0993_00199 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 457
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 213/382 (55%), Gaps = 17/382 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + D+R + K+ F AI G++ +AH+FI P+ KG + VI ++ + D ++ V
Sbjct: 29 GGVVIDSRKV--QKDYLFVAIDGENVNAHQFI-PDTIEKGALCVISHEDLGDTDFSYILV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E G +L+++A R+S F +VG+TGSVGK++TK MIA ++ + V ++ G
Sbjct: 86 ESTGQ-----ALLDIAKLYRDS-FDVKVVGITGSVGKTSTKEMIA-SVVAQKYKVHKTIG 138
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN G+ L++ ++ +A+LEMG++ GE+ L+ +A P+I V+ N+G +HLE
Sbjct: 139 NFNNEWGLPLTIFELNEDHQVAILEMGVNHFGEMRRLSSVASPDICVITNIGVAHLEFFK 198
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+ E + + K ++ Q+ K G + N DD L++ +G + FG C + A +
Sbjct: 199 TREGILQEKSKMIQDMKDGGTIIFNGDDDLLSQAGPIKGATPILFGLGDNC--QFYADNI 256
Query: 287 ANGGL-GVQVVLE-KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
GL G + + + V+P PG H+ NA A AAV ++ ++ +
Sbjct: 257 QPMGLRGTSCTIHLPDESSFECVVPLPGTHMISNALAGAAVGYTLHLTSEEIKAGIEGLP 316
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
+ R+ ++ + I I++D YNANP+S +AAID+L D+A G++V +LG+M ELG+ E+
Sbjct: 317 SIPGRNNIIKTDRLI-ILDDCYNANPVSMKAAIDVL-DMAI-GRKVAVLGNMGELGNNEK 373
Query: 405 ESHEKILSYCCDACIDLIGLVG 426
H ++ Y IDL+ +G
Sbjct: 374 VLHREVGEYAAAHGIDLVCGIG 395
>gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
trichosporium OB3b]
gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
trichosporium OB3b]
Length = 474
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 129/385 (33%), Positives = 191/385 (49%), Gaps = 18/385 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR LAP FFAI G+ D H+F++ + +G G + ++ G +
Sbjct: 31 ISIDTRTLAPG--DLFFAIKGEARDGHDFVAAA-FERGAAGAVVDEAHAGALAGRAPLYV 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+V SL + AR R + +VGVTGSVGK++TK M A L G S ++
Sbjct: 88 VKDVQ--ESLERLGARARE-RSAAYVVGVTGSVGKTSTKEMAAAVLSRFGA-AHASAASY 143
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN+ GV LSL + A V E+GM+ GEI LA + P + +V V HLE L
Sbjct: 144 NNQWGVPLSLARMPAATRFGVFEIGMNHAGEIAALAPLVEPHVALVTRVAPVHLEHFACL 203
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANL---TVPRGVRKVF-FGWRRGCDVRLVAA 284
E +A AK EIF G V +LN DD + VF FG G RL++
Sbjct: 204 EAIADAKSEIFSGVVDGGVAILNRDDETFERMLEAAAASRAAHVFGFGVSEGAQARLLSY 263
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ + + +++ I +PG H A+N+ A +A + + LAQ +L+ F+
Sbjct: 264 DPRENSVEADIFGRR----LRYRIGAPGRHFALNSLAVLTIAHVLDLDLAQASAALAEFA 319
Query: 345 PVQ---MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
P + R +L + +++++YNANP S RAA++LL G+RV +LGDMLELG
Sbjct: 320 PPKGRGRREQLPAGAVPLTLIDESYNANPTSMRAALELLGAERPIGRRVAVLGDMLELGP 379
Query: 402 TERESHEKILSYCCDACIDLIGLVG 426
+ E H ++ S A +DL+ G
Sbjct: 380 SAAELHAELASDLEAAGVDLLFTAG 404
>gi|424827302|ref|ZP_18252111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sporogenes PA 3679]
gi|365980225|gb|EHN16261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sporogenes PA 3679]
Length = 462
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 218/410 (53%), Gaps = 27/410 (6%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++VNG+++ G + TDTR + K F A+ G++F+ ++F+ +
Sbjct: 6 LEEIIKAVNGELVITGEKDEYNSVSTDTRKIE--KGDIFIALKGENFNGNKFVQTAIENG 63
Query: 86 GCVGVIGNQVCNNWDKG-------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ ++ N+DK ++VE NT +L+++A Y + S+ +V +T
Sbjct: 64 AALCIVSEI---NFDKEKIGKSSYVIKVE-----NTNKALLDLAKYYK-SKLDIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L + +D++ DIAVLEMGM+
Sbjct: 115 GSTGKTSTKDLVAAVL-SEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ N+G SH+E+LGS E++ +AK E+ ++ ++N D L++
Sbjct: 174 EIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEVTDFFSKDNILIINGDSDLLS 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
N + + G + D + + ++ + + F + PG H +N
Sbjct: 234 NFESDK-YKVCKIGTEKKFDFNGYNLNLEEESIKFDILEQGKTAYKGFNVNVPGKHNVLN 292
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
+ A A + ++ + + N MR + ++ G I+ND YNA+P S +AAID
Sbjct: 293 SLTAIACGKVLDMNYKDIQNGIKNLKATSMRLD-IIKEKGFTIINDCYNASPDSMKAAID 351
Query: 379 LLKDIACNGKRVV-ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
++K++ GKR + +LG M ELG+ +H ++ Y + +DL+ +G+
Sbjct: 352 VMKNVK--GKRTIALLGSMRELGNEGYRAHREVSEYAKEKGVDLLFSIGE 399
>gi|444914627|ref|ZP_21234769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Cystobacter fuscus DSM 2262]
gi|444714486|gb|ELW55367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Cystobacter fuscus DSM 2262]
Length = 465
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 142/406 (34%), Positives = 199/406 (49%), Gaps = 30/406 (7%)
Query: 36 VNGKILKWGPPG---IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIG 92
V G + GP +CTDTR L P F A+ G+ FDAH+F++ V+
Sbjct: 13 VAGATRRGGPAADFQAVCTDTRALTPGC--LFVALQGERFDAHDFLAQAAQAGAAGAVVK 70
Query: 93 N-QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIA 151
+ +GFV E + L +L A RF + V GS GK+TTK M+
Sbjct: 71 RGRTLPALPEGFVLYEVEDTLAALGAL----GRAHRERFRIPVGAVGGSNGKTTTKEMVG 126
Query: 152 LALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211
L + G ++ GN NN +GV L+L+ + AV+E+GM+ GE+ L R+ARP+
Sbjct: 127 AILSTRG-PALKTEGNLNNEIGVPLTLLRLLPEHVAAVVELGMNQPGEMTRLTRVARPDA 185
Query: 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFF 271
++ V HLE LGSLE VA A+GE+F+E V V+N DD L+ +++ F
Sbjct: 186 ALLTVVQPEHLEGLGSLEGVAEAEGEMFRELPPTAVAVVNLDDALIPAQAARGQAKQLTF 245
Query: 272 GWRRGCDVRLVA-AQVANGGLGVQVVLEKEREM-------VKFVIPSPGLHLAINACAAA 323
G VRLVA A GL + V R M + FV G H A+NA A
Sbjct: 246 GRHADAQVRLVAVASRGREGLTLTV-----RHMGRDWPVRLGFV----GEHNALNATGAF 296
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD- 382
A+A G S + L + P R ++ + GI +V+D YNANP S AA+D L+
Sbjct: 297 ALAVALGYSPEECVKGLESARPYARRLNVVDAPHGITVVDDCYNANPASMAAALDTLRSL 356
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
+A G+ V +LGDMLELG E E H + L +L+ G R
Sbjct: 357 VAPGGRAVAVLGDMLELGPGEGEEHTR-LGALVGGKAELVAFFGPR 401
>gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
29176]
gi|197298772|gb|EDY33313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus lactaris ATCC 29176]
Length = 463
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 212/414 (51%), Gaps = 37/414 (8%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPN-----KNQWFFAITGQHFDAHEFISPE 81
++ EIA + G G P ++ + +A + K+ F AI G D H FI P+
Sbjct: 4 MSLKEIAAACGGTY--HGDPALLSKEASSVAIDSRKVQKDTLFVAIKGARVDGHSFI-PQ 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ +G + + Q + ++QV + +L ++A + R S +VG++GSV
Sbjct: 61 VMDQGAICSLSEQDLGDVTYPYIQV-----ASCTEALKDLAEHYRRS-LDIKVVGISGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK MIA L S V ++ GN+NN +G+ L++ + + ++AVLEMG+S G++
Sbjct: 115 GKTSTKEMIASVL-SEKYCVLKTEGNFNNEIGLPLTVFNLRKEHEVAVLEMGISHFGDME 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA++ARP++ V+ N+G +HLE+LG+ + + + K +F +LN DD + T
Sbjct: 174 PLAKIARPDVCVITNIGYAHLENLGTRDGILKEKTSMFDFMNPDGTVILNGDDDKLRGYT 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS---------PG 312
RG++ V+FG C A Q+ GL V FV PS PG
Sbjct: 234 SERGIQPVYFGLDPACPFH--AEQIQKMGLKGTV--------ATFVTPSSSFSAHVSIPG 283
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H+ NA A AV G+ ++ + P+ R+ L+ + I++D YNANP S
Sbjct: 284 DHMISNALAGVAVGYALGMKDEEIIRGIEKLVPIAGRNNLIEAEH-YTIIDDCYNANPAS 342
Query: 373 TRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
++++D+L + + V ILGDM ELG+ E++ H ++ SY I L+ +G
Sbjct: 343 MKSSLDVLA--FADTRTVAILGDMGELGADEKKMHAEVGSYAVKKGISLLICIG 394
>gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
hansenii DSM 20583]
gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
hansenii DSM 20583]
Length = 454
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 206/380 (54%), Gaps = 16/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R F I G DAH+FI ++ K + + + ++ V+
Sbjct: 31 IFTDSR--KAEAGGLFVPIKGARVDAHDFIE-QVMEKAVLATLSEKDLGEKPFPYILVK- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L ++ ++A + + +VG+TGSVGK++TK +IA L + N ++ GN+
Sbjct: 87 ----SSLIAVKDIAEFYLK-QLQIPVVGITGSVGKTSTKEVIASVL-AQKYNTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + ++AVLEMG+S GE+ LA++ARP V+ N+G HLE L S
Sbjct: 141 NNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRLAKIARPNTCVITNIGLCHLEFLKSR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ + +AK EIF + D +LN DD + + +G++ VFFG + A ++
Sbjct: 201 DGILKAKTEIFDYLQSDDHIILNGDDDKLVTVQETKGIKPVFFGVENHQGIW--ADEIKP 258
Query: 289 GGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
GL G+ + E +IP PG H NA AA AV +G+++ ++ + + V
Sbjct: 259 EGLKGISCCIHAGEESFSVLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVS 318
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R ++ +++D YNANPIS +A++D+L D G++V ILGDM ELG+ ER+ H
Sbjct: 319 GRFH-IIEAPNYTVIDDCYNANPISMKASLDVLTDAL--GRKVAILGDMGELGADERKMH 375
Query: 408 EKILSYCCDACIDLIGLVGD 427
+++ + + ID++ VG+
Sbjct: 376 KEVGKHAAEKEIDVLLCVGE 395
>gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
16841]
gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
16841]
Length = 476
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 130/403 (32%), Positives = 209/403 (51%), Gaps = 49/403 (12%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGN 111
D+R++ K+ F + G+ D H FI P ++ KG + V+ + N ++ VE
Sbjct: 34 DSRLV--EKDYLFIPVRGEKVDGHSFI-PSVFEKGALAVLSEEKLENPAGPYILVE---- 86
Query: 112 VNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNN 170
NTL+++ +A Y R +VG+TGSVGK++TK MIA L + NV ++ GN NN
Sbjct: 87 -NTLDAMKKIAADYRRGLDIK--VVGITGSVGKTSTKEMIASVL-AQKYNVLKTEGNLNN 142
Query: 171 RVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLED 230
+G+ L++ I +AVLEMG+S GE+ L+ MA P+I V+ N+G HLE+L + +
Sbjct: 143 EIGLPLTIFKIREEHQVAVLEMGISEFGEMDRLSTMANPDICVITNIGLCHLENLITRDG 202
Query: 231 VARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
+ +AK E F + VLN DD + + V G VF+G + AA+VA
Sbjct: 203 ILKAKTESFAHLTPDGIAVLNGDDDKLCDKKVVNGKPAVFYGIEK-------AAKVAETE 255
Query: 291 LGVQVVLEK----------------------EREM-----VKFVIPSPGLHLAINACAAA 323
G + + EK +E ++ IP G H NA AA
Sbjct: 256 EGTKTLAEKTVYATNVEAVDLTGTKAAIHYPSKETGGEVTMEVTIPIAGEHNVYNALAAV 315
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+VA G++ ++ + + + RS L + ++GI I++D YNANP+S +A+ID+L +
Sbjct: 316 SVARELGLTCDEMKRGIESVQTIGGRSNL-IHKNGITIIDDCYNANPVSMKASIDVLSN- 373
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+++ +LGDM ELG+ E++ H + + ID + VG
Sbjct: 374 -APGRKIAVLGDMGELGAEEKQLHYMVGEHFAGKGIDALYCVG 415
>gi|335049557|ref|ZP_08542547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera sp. UPII 199-6]
gi|333762817|gb|EGL40302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera sp. UPII 199-6]
Length = 458
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 142/407 (34%), Positives = 211/407 (51%), Gaps = 26/407 (6%)
Query: 27 WTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ E+ ++ ++L G + TDTR L K F A+ G+ FD H+F+ +
Sbjct: 4 FTVKEVEQATGARLLAPVTGGNRTFLQVYTDTRSL--QKGGLFVALKGERFDGHDFVL-Q 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG GV V ++ F + V +TL + +A + R RF+ ++ VTG
Sbjct: 61 AVAKGAAGV----VVAAREETFAALPVPVFAVPDTLRAYQALARFHRR-RFALPVIAVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK++T+ MIA L S + V+Q+ N+NN +G+ +L+G+ + V+EMGM G G+
Sbjct: 116 SVGKTSTRQMIASVL-SQKLRVWQTEKNFNNEIGLPKTLLGLTAEHEACVVEMGMRGPGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I ELA +A P I VV NVG SH+E LGS E++A+AKGE+ VLN DD VA
Sbjct: 175 IAELAAIAEPTIGVVTNVGKSHIELLGSQENIAKAKGELPAALPATGTAVLNQDDWRVAA 234
Query: 260 LT-VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+ + RG + + +G G VR A ++ G+ + + + +P G H N
Sbjct: 235 MAKLCRG-KVIGYGTSVGAAVR--AGEIQTDDKGLSFICRCFDQTFRATVPVLGKHHVYN 291
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA A A L G+S Q+ L+ ++ V MR E LV +NDAYNANP S A+
Sbjct: 292 ALAAVATARLLGLSETQMCKGLAAYAGVPMREE-LVHVGPYTFINDAYNANPASMEEAVQ 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHE----KILSYCCDACIDL 421
L + +++ +LG MLELG HE KI + A I L
Sbjct: 351 TLAAVKKE-QKIAVLGGMLELGDWTVREHELLGKKIAAASITALITL 396
>gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera genomosp. type_1 str. 28L]
gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Megasphaera genomosp. type_1 str. 28L]
Length = 458
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 142/407 (34%), Positives = 211/407 (51%), Gaps = 26/407 (6%)
Query: 27 WTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ E+ ++ ++L G + TDTR L K F A+ G+ FD H+F+ +
Sbjct: 4 FTVKEVEQATGARLLAPVTGGNRTFLQVYTDTRSL--QKGGLFVALKGERFDGHDFVL-Q 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG GV V ++ F + V +TL + +A + R RF+ ++ VTG
Sbjct: 61 AVAKGAAGV----VVAAREETFAALPVPVFAVPDTLRAYQALARFHRR-RFALPVIAVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK++T+ MIA L S + V+Q+ N+NN +G+ +L+G+ + V+EMGM G G+
Sbjct: 116 SVGKTSTRQMIASVL-SQKLRVWQTEKNFNNEIGLPKTLLGLTAEHEACVVEMGMRGPGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I ELA +A P I VV NVG SH+E LGS E++A+AKGE+ VLN DD VA
Sbjct: 175 IAELAAIAEPTIGVVTNVGKSHIELLGSQENIAKAKGELPAALPATGTAVLNQDDWRVAA 234
Query: 260 LT-VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+ + RG + + +G G VR A ++ G+ + + + +P G H N
Sbjct: 235 MAKLCRG-KVIGYGTSVGAAVR--AGEIQTDDKGLSFICRCFDQTFRATVPVLGKHHVYN 291
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA A A L G+S Q+ L+ ++ V MR E LV +NDAYNANP S A+
Sbjct: 292 ALAAVATARLLGLSETQMCKGLAAYAGVPMREE-LVHVGPYTFINDAYNANPASMEEAVQ 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHE----KILSYCCDACIDL 421
L + +++ +LG MLELG HE KI + A I L
Sbjct: 351 TLAAVKKE-QKIAVLGGMLELGDWTVREHELLGKKIAAASITALITL 396
>gi|400756774|ref|YP_006589581.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
sulfurreducens PCA]
gi|409913520|ref|YP_006891985.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
sulfurreducens KN400]
gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
sulfurreducens KN400]
gi|399108085|gb|AFP20514.1| UDP-N-acetylmuramylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
sulfurreducens PCA]
Length = 470
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 148/410 (36%), Positives = 217/410 (52%), Gaps = 24/410 (5%)
Query: 26 IWTINEIAESVNGKILKWGP---PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++T+++I + G+I+ G + TD+R + P + F + G+ FD H+++
Sbjct: 2 LFTLDDILGATGGEIVAGGETIGASGVSTDSRTVEPG--ELFIPLRGERFDGHDYLDAAR 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMA-CYARNSRFSGVLVGV 137
GV V W G Q+ + +TL +L ++A C+ R RF +V V
Sbjct: 60 ----ARGVRLTLVERQWLAGR-QLPADVTCIVVDDTLRALGDLAACHRR--RFDIPVVAV 112
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+TTK M+A L G ++ GN NN +GV L + AVLE+GMS
Sbjct: 113 TGSNGKTTTKEMLAAILARTGEG-LKTEGNLNNLIGVPRMLFRLSGVHRWAVLEIGMSEF 171
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA + RP++ ++ N +HLE+LGS+E VARAKGE+F + G V NADDPL+
Sbjct: 172 GEIDRLAEIVRPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLEPGSSAVYNADDPLI 231
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN-GGLGVQVVLEKEREMVKFVIPSPGLHLA 316
A P GV++V FG RG DV A V N G G + L V + + G H
Sbjct: 232 ARCPSPEGVKRVSFGL-RGGDV--TAEDVENLGKKGQRFTLRLPNGRVTVTLHAFGSHNV 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
NA AAAA A + GV+ ++ L F P R L + +++D+YNANP S AA
Sbjct: 289 ANALAAAAAARVLGVAPEEIARGLGEFMPYARRFN-LEEVGDVVLIDDSYNANPASMAAA 347
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ L++I +G+ V +LGDMLELG E+H + L C+D + ++G
Sbjct: 348 LTTLREIKGSGRAVAVLGDMLELGIGAEEAHRQ-LGRLAATCVDRLYVLG 396
>gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 454
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 206/380 (54%), Gaps = 16/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R F I G DAH+FI ++ K + + + ++ V+
Sbjct: 31 IFTDSR--KAEAGGLFVPIKGARVDAHDFIE-QVMEKAVLATLSEKDLGEKPFPYILVK- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
++L ++ ++A + + +VG+TGSVGK++TK +IA L + N ++ GN+
Sbjct: 87 ----SSLIAVKDIAEFYLK-QLQIPVVGITGSVGKTSTKEVIASVL-AQKYNTLKTQGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + ++AVLEMG+S GE+ LA++ARP V+ N+G HLE L S
Sbjct: 141 NNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRLAKIARPNTCVITNIGLCHLEFLKSR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ + +AK EIF + D +LN DD + + +G++ VFFG + A ++
Sbjct: 201 DGILKAKTEIFDYLQSDDHIILNGDDDKLVTVQETKGIKPVFFGVENHQGIW--ADKIKP 258
Query: 289 GGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
GL G+ + E +IP PG H NA AA AV +G+++ ++ + + V
Sbjct: 259 EGLKGISCCIHAGEESFSVLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVS 318
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R ++ +++D YNANPIS +A++D+L D G++V ILGDM ELG+ ER+ H
Sbjct: 319 GRFH-IIEAPNYTVIDDCYNANPISMKASLDVLTDAL--GRKVAILGDMGELGADERKMH 375
Query: 408 EKILSYCCDACIDLIGLVGD 427
+++ + + ID++ VG+
Sbjct: 376 KEVGKHAAEKEIDVLLCVGE 395
>gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
[Anaplasma marginale str. Mississippi]
Length = 456
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 138/401 (34%), Positives = 211/401 (52%), Gaps = 31/401 (7%)
Query: 43 WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NNWDK 101
W G I DTR L P F AI G++FD H F+ PE + KG V + ++V D
Sbjct: 14 WTSLGRISIDTRTLRPG--DIFVAIKGKNFDGHCFV-PEAFSKGAVAAVVDEVSVPTADC 70
Query: 102 G-FVQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
G V V+ +TL +L ++A R++R ++ +TGS GK+TTK +++ AL G
Sbjct: 71 GPLVAVK-----DTLRALHDIATMRLRDTR--AKVIAITGSAGKTTTKYVLSGALSKYG- 122
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
V+ + N+NN +G+ L + + VLEMGM+ GE+ L+R+ARP++ V+ NVG
Sbjct: 123 KVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIARPDVAVITNVGP 182
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV------RKVFFGW 273
+HLE S+E V AK E+F K G + VLN D A + R V R + FG
Sbjct: 183 AHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKM---RAVAESYCARIISFGV 239
Query: 274 RRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSL 333
G DV++ + + + + E+ +++ + S HLA + AAV F + L
Sbjct: 240 GAGADVQIFRREEPSNPVTFRCFGEE----LQYNLKSGARHLAYSVAITAAVGRAFSIDL 295
Query: 334 AQVGISLSNFSPVQMRSELLVSRSGIKIV--NDAYNANPISTRAAIDLLKDI--ACNGKR 389
Q ++ F P++ + + G +IV +DAYNANP+S AAI+ L ++ A +R
Sbjct: 296 TQARGAMEEFVPLEGSKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRR 355
Query: 390 VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
V ILGDMLELGS H +L + ID++ VG ++
Sbjct: 356 VAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHML 396
>gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
DSM 15981]
gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
DSM 15981]
Length = 476
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 219/417 (52%), Gaps = 26/417 (6%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ ++ E+ NG++L + I D+R ++ F I G+ DAH FI + G
Sbjct: 6 VKQVMEAANGRLLCGNEEQVLANISLDSRNMS--GLDLFVPIVGEKVDAHRFICQAI-GN 62
Query: 86 GCVGVI--GNQVCNNWDKGFVQVEGNGN-------------VNTLNSLVNMACYARNSRF 130
G V V ++ + +K E GN +T +L ++ Y RN R
Sbjct: 63 GAVAVFTSAHRDISQVEKAIADWESRGNDGKAARKAAWIAVEDTKAALQSLGKYCRN-RL 121
Query: 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVL 190
S LVG+TGSVGK+TT+ MIA AL S G V+++ GN N++VGV +++ I +IAV+
Sbjct: 122 SIPLVGITGSVGKTTTREMIAAAL-SAGYAVYRTPGNSNSQVGVPITMSSIPSEAEIAVI 180
Query: 191 EMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVL 250
E+GMS GE+ ++AR+A + VV N+G +H+E LGS E++ R K I + +
Sbjct: 181 ELGMSEPGEMEKIARVACVDSAVVTNIGIAHIEQLGSQENILREKLHIQDGMNPEGILFV 240
Query: 251 NADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS 310
N DDPL+A++ G R + +G GC+ R ++ G V ++R V+ +
Sbjct: 241 NGDDPLLADIQAEGGRRIIRYGMSAGCEYRAEDVRLDEGYPVFTAVHGEKRTPVRLQV-- 298
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
G H+ NA AA AVA +GV + + L F + R ++ G+ I++D+YNA+P
Sbjct: 299 MGTHMVGNAMAALAVAAEYGVDMEEAARKLGEFGGYKGRQQIH-GFQGMTIIDDSYNASP 357
Query: 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+S +A +++L + +++ +L DM ELG E H +I Y + +D + L G+
Sbjct: 358 VSMKAGLEVLSSMKPGARKIAVLADMKELGPDTVEFHREIGRYIAEHPVDQVLLYGE 414
>gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
Length = 496
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 221/423 (52%), Gaps = 21/423 (4%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEF 77
+P+WT++++ + G++ WG +I TD+R + F A+ G++FDA +F
Sbjct: 30 QNPVWTLSQVLLATGGRL--WGDRTQAAFRLISTDSRTI--EAGDLFVALRGENFDAQQF 85
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
++ E KG G++ Q V V +TL +L ++A Y R ++ +
Sbjct: 86 VA-EAVAKGAAGLVLEQPPVE----PVPVPVVLVPDTLAALGDLAHYRRCRMRELQVLAI 140
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+T K M A L+ V ++ GN NN VG+ LSL+ ++ + AVLEMGM+
Sbjct: 141 TGSSGKTTVKEMTATILQRRQ-QVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRP 199
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI +A +A P+I + NV ++HL L ++ VARAKGE+F V+N DD V
Sbjct: 200 GEIARMAEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRV 259
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L G +++ +G R VR + + G+ + ++ R+ V+ + + G H
Sbjct: 260 RRLAARTGQQRITYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVR--LAALGEHNV 317
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
NA AAAA+AT GVS A++ L+ + P R +L +G+K+++D YNANP S AA
Sbjct: 318 SNALAAAALATAAGVSPAEIAAGLAAYRPFAKRMQLQPFIAGLKLIDDTYNANPSSMLAA 377
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD---RVVVQC 433
+ + ++ + V +LGDMLELG +H I D + VG+ +VV
Sbjct: 378 LATVHNLRRQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVEAA 437
Query: 434 KWR 436
++R
Sbjct: 438 RYR 440
>gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium prausnitzii A2-165]
gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium prausnitzii A2-165]
Length = 454
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 207/387 (53%), Gaps = 17/387 (4%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCNNWDKGF 103
P ++ TD+R + P F A G+ FD H+F + L G CV V N+ +G
Sbjct: 24 PVTLVTTDSREVCPG--CIFVAFPGEKFDGHDFAAKALENGALCV------VLNHPVEGV 75
Query: 104 VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ + ++ ++++ + R S+F +VGVTGSVGK+TTK M A+ G + +
Sbjct: 76 PEEKSVICPDSYHAMMVLGANYR-SQFHPKVVGVTGSVGKTTTKQMTYAAIAGFGSTI-K 133
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN NN +G+ ++ I + AV+EMGMS GEI L++ ARP++ ++ +G SH+
Sbjct: 134 TEGNQNNELGLPRTMFRIGKETQYAVVEMGMSHAGEIERLSKCARPDVGIITCIGMSHIG 193
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGW-RRGCDVRLV 282
+LGS E++ +AK EI G VLN DDP + +P VR V+F DV
Sbjct: 194 NLGSQENICKAKLEICAGLPEGAPLVLNGDDPFLRKAVLPDHVRPVWFSLGDENADV--C 251
Query: 283 AAQVANGGLGVQVVLEKEREMVKFV-IPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
A + G+ VLE E V IP+ G H NA AA AT G++ +V L+
Sbjct: 252 ALSIQQDEKGMSFVLEDHEEGTFLVKIPAMGRHNVANALAAYCAATRLGLNARRVIAGLA 311
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
+F MR +++ +R G+ ++ D YNANP S +AA+ + ++ C +R +LGDMLELG
Sbjct: 312 DFEQTGMRQKVVHAR-GVDVIEDCYNANPDSMKAALAMFREYPCK-RRFALLGDMLELGD 369
Query: 402 TERESHEKILSYCCDACIDLIGLVGDR 428
R +HE++ + +D + G++
Sbjct: 370 ISRAAHEEVGRQAVENKVDYLVTYGEQ 396
>gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
cellulovorans 743B]
gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
cellulovorans 743B]
Length = 459
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 222/419 (52%), Gaps = 47/419 (11%)
Query: 28 TINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+ ++ G ++ GP ++ DTR L K + AI G++FD ++F+ E
Sbjct: 5 TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLE--KGCIYIAIKGENFDGNDFV-VEAIN 61
Query: 85 KGC-------VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
KG + +V N V VE NT +L+ +A Y RN + ++GV
Sbjct: 62 KGAELCIIDKIAYTEAEVLNK--SAIVLVE-----NTKKALMQLAKYYRN-KLDIKVIGV 113
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK++TK +IA AL S + VF++ GN+NN +G+ L + +D D+AVLEMGMS
Sbjct: 114 TGSTGKTSTKDLIAAAL-SEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDL 172
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
EI L+ +ARP++ V+ N+G SH+E+L + E++ +AK EI ++ ++N DD +
Sbjct: 173 FEIQRLSDVARPDLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYL 232
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG----LGVQVVLEKER-----EMVKFVI 308
+ T+ + + RL+ A +++ G +VL+++ KF I
Sbjct: 233 S--TIDK------------AEYRLIKASISDDKNIDLKGESLVLKEDSCEFKLNESKFYI 278
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P PG H NA A A A GV + N MR ++ ++ GI I+ND YNA
Sbjct: 279 PMPGKHNISNALLAIACARELGVEDQLINKGFLNIEATSMRLDIEKNK-GITIINDTYNA 337
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+P S +AAI+++K++ +R+ ++G M ELG E H+++ + + +D++ +G+
Sbjct: 338 SPDSMKAAIEVMKNLKGK-RRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIGE 395
>gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium rectale DSM 17629]
Length = 464
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 190/351 (54%), Gaps = 14/351 (3%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F I G+ D H+FI P ++ +G V+ + +V V +T +++ +A
Sbjct: 48 LFIPIKGERVDGHKFI-PNVFEQGAAIVLSEHELKDPAGPYVLVG-----STTDAMKKLA 101
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+ R S +VG+TGSVGK++TK MI+ LE +V ++ GN+NN +G+ L++ GI
Sbjct: 102 AFYRKS-LDIKVVGITGSVGKTSTKEMISSVLEQ-KYSVHKTAGNFNNEIGLPLTIFGIR 159
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ +AVLEMG+S GE+ L+ M+ P++ V+ N+G HLE LG + V +AK E F+
Sbjct: 160 ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHM 219
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR--LVAAQVANGGL-GVQVVLEK 299
V VLNADD +A + G +++G DV + + N G G++
Sbjct: 220 MPDAVAVLNADDDKLATVQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVT 279
Query: 300 EREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI 359
I PG H NA AAAAV G+++A++ + + R+ + + G+
Sbjct: 280 PEGEFDAQIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKTH-GM 338
Query: 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+++D YNANP+S +++I++L G+ + +LGDM ELGS E++ H ++
Sbjct: 339 TVIDDCYNANPVSMKSSIEVLSH--AKGRTIAVLGDMGELGSDEKKLHHEV 387
>gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. D5]
gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. D5]
Length = 456
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 199/380 (52%), Gaps = 18/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + K+ F AI G D H FI P+ G + + + + ++ V
Sbjct: 31 VTIDSRKI--QKDCLFIAIRGARVDGHMFI-PQSIHDGALCAVSEKRIESASYPYIMV-- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L + Y R+ R +VG++GSVGK++TK MIA L NV ++ GN+
Sbjct: 86 NSCAQALKDIAEH--YRRSLRLK--VVGISGSVGKTSTKEMIASVL-GQKYNVLKTEGNF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ I ++AVLEMG+S GE+ LA+MARP++ V+ N+G +HLE L S
Sbjct: 141 NNEIGLPLTIFNIREEHEVAVLEMGISDFGEMERLAKMARPDVCVLTNIGCAHLEQLKSR 200
Query: 229 EDVARAKGEIF-QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E + +AK E+F + GD+ +LN DD ++A++T + VFFG + A +
Sbjct: 201 EGILKAKTEMFLYMNPKGDI-ILNGDDDMLASVTPANHIEPVFFGLDPA--LAYSAEDIE 257
Query: 288 NGGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
N GL G + I PG H+ NA AA AV + G++ ++ + + P+
Sbjct: 258 NLGLKGTSALFHTPDSEFGAHISIPGAHMVYNALAAIAVGRVLGMNDGEIRQGIESLVPL 317
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R+ L+ + I++D YNANP S +A++D+L G V ILGDM ELG E
Sbjct: 318 AGRNN-LIETEFLTIIDDCYNANPASMKASLDVLS--KAKGHTVAILGDMFELGPKAHEM 374
Query: 407 HEKILSYCCDACIDLIGLVG 426
H + + +A ID + +G
Sbjct: 375 HCETGEFAAEAGIDELICIG 394
>gi|310659203|ref|YP_003936924.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[[Clostridium] sticklandii]
gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[[Clostridium] sticklandii]
Length = 457
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 204/391 (52%), Gaps = 36/391 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + +N + AI G++FD ++FI + K V ++ N+ +N K + VE
Sbjct: 29 VVTDSRKIQ--ENDCYIAIKGENFDGNDFIEQAINNKASV-ILSNRQSSN--KEVITVE- 82
Query: 109 NGNVNTLNSLVNMACYARNS--RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
++++ + A+N +F + VTGS GK+TTK M+ + ++ G
Sbjct: 83 -------DTVIALGSIAKNYLMQFDIKKLAVTGSSGKTTTKDMLYYVFNE-HFSTHRTDG 134
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+ + ID+ + A+ EMGMS GEI LA++ RP I ++ N+G H+E L
Sbjct: 135 NYNNEIGLPLTALNIDKGYEAAIFEMGMSALGEIDYLAQIVRPNIAIITNIGSCHIEILK 194
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAAQ 285
S E++ +AK EI D ++N DD + +L+ + +G+ C +R +
Sbjct: 195 SQENIFKAKMEISNYLNNDDYLIVNGDDKYLTSLSENEYKFNLIKYGFGEECQLRASDYK 254
Query: 286 VANG-------GLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGI 338
+G G+G+ +F +P+ GLH NA +A A ++ + ++
Sbjct: 255 AVDGQSEFWVTGMGIN---------RRFTLPAIGLHNVSNALSAIAAGLIYKIPTEKIQA 305
Query: 339 SLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLE 398
L F P ++R ++L ++ IK +ND+YNANP S A I + A G+++ ILGDMLE
Sbjct: 306 GLMKFQPSKLRMQIL-EKNNIKYINDSYNANPESMEAVITSFESYA-RGRKIAILGDMLE 363
Query: 399 LGSTERESHEKILSYCCDACIDLIGLVGDRV 429
LG +HE+I + DL+ +G ++
Sbjct: 364 LGEFSVAAHERIGRLASEK-FDLVFFIGSQM 393
>gi|197124212|ref|YP_002136163.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Anaeromyxobacter sp. K]
gi|196174061|gb|ACG75034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Anaeromyxobacter sp. K]
Length = 468
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 209/396 (52%), Gaps = 16/396 (4%)
Query: 20 CPSNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
P ++P +T +E+A + G+ L P + + TDTR L+P Q F A+ G+ FDAH+
Sbjct: 3 TPRSTPQFTPDELAAATRGRWLGAPPSAVAGVSTDTRTLSPG--QLFVALKGERFDAHDH 60
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLV 135
+ V+ + + L + AR+ R F ++
Sbjct: 61 LEAAAAAGAAALVVSEAWAAAHPAPPRP-----ALAVADPLAALGAIARHHRCRFGIPVI 115
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
GVTGS GK+TT+ MIA L + G V ++ GN NN VGV L+L G++ A AV+EMGM+
Sbjct: 116 GVTGSNGKTTTREMIAAILATRG-PVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMN 174
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI LA +A+P++ VV +HLE LG+++ VA AK E+++ G + V+NADD
Sbjct: 175 HPGEIARLAAIAQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADDA 234
Query: 256 LVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPS-PGL 313
+ V G R + F RG +V +V + + G++ VL V IP G
Sbjct: 235 RMLKRGVASGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGA 294
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H A NA AAA A G + ++ L+ PV R L SG+++V+D YNANP S
Sbjct: 295 HNARNAAAAACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANPASM 354
Query: 374 RAAIDLLKDI--ACNGKRVVILGDMLELGSTERESH 407
AA+D+L+D+ A + +LGDMLELG+ E E+H
Sbjct: 355 SAALDVLRDLAAAPGARAFAVLGDMLELGAFEAEAH 390
>gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.]
Length = 493
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 211/412 (51%), Gaps = 24/412 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
WT EI ++ G + + D+R +A + F AI G + D H F + +
Sbjct: 7 WTSEEIIKATGGAAVSGKDKHTFTGVSIDSRTIALG--ELFVAIKGNNHDGHAF-AEAVV 63
Query: 84 GKGCVGVI------GNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVL 134
+G G++ G +C+ N D ++V+ NT +L ++A Y R +R +
Sbjct: 64 EQGIKGIVINKQKAGELLCDKLKNQDVFCIEVD-----NTTKALGDLAAYNR-TRADVSV 117
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
V +TGS GK++TK M A A+ S + + GN NN +G+ L+L+ + + AVLE+GM
Sbjct: 118 VAITGSNGKTSTKEM-ANAIVSRKFDTLSTTGNLNNEIGLPLTLLKLCSSQKWAVLELGM 176
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+ GEI LA + +P+I ++ N+G HLE L ++E V AKGE+ K +LNADD
Sbjct: 177 NHPGEIARLAEICKPDIGIITNIGRGHLEGLKTIEGVMNAKGELLDGIKPDGTAILNADD 236
Query: 255 PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
V L ++FG ++ + +V N L VL+ + ++ + +PG
Sbjct: 237 ERVMCLARKTTRNVIYFGLSENALIKASSVEV-NKNL-TSFVLKLPDDSIRVELNAPGRF 294
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
+ NA AAA+V L +S ++ L NF+PV+ R + ++G+ I++D+YNANP S
Sbjct: 295 MVSNALAAASVGYLLNLSAQEIKSGLENFAPVKGRMNITTLQNGVTIIDDSYNANPDSME 354
Query: 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
AAI L + + ++ GDMLELG H+KI C + I+ + G
Sbjct: 355 AAIKSLAGLKGKNRGALVAGDMLELGIYSETLHKKIGELCAECGIERLYATG 406
>gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium rectale M104/1]
Length = 464
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 189/351 (53%), Gaps = 14/351 (3%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F I G+ D H FI P ++ +G V+ + +V VE +T +++ +A
Sbjct: 48 LFIPIKGERVDGHRFI-PTVFEQGAAIVLSEHELTDPAGPYVLVE-----STTDAMKKLA 101
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+ R S +VG+TGSVGK++TK MI+ LE +V ++ GN+NN +G+ L++ GI
Sbjct: 102 AFYRKS-LDIKVVGITGSVGKTSTKEMISSVLEQ-KYSVHKTAGNFNNEIGLPLTIFGIR 159
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ +AVLEMG+S GE+ L+ M+ P++ V+ N+G HLE L + V +AK E F+
Sbjct: 160 ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLRDRDGVLKAKTECFEHM 219
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR--LVAAQVANGGL-GVQVVLEK 299
V VLNADD +A + G +++G DV + + N G G++
Sbjct: 220 MPDAVAVLNADDDKLATVQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVT 279
Query: 300 EREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI 359
I PG H NA AAAAV G+++A++ + + R+ + + G+
Sbjct: 280 PEGEFDAHIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKTH-GM 338
Query: 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+++D YNANP+S +++I++L G+ + +LGDM ELGS E++ H ++
Sbjct: 339 TVIDDCYNANPVSMKSSIEVLSH--AKGRTIAVLGDMGELGSDEKKLHHEV 387
>gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile NAP08]
gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile NAP07]
gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile NAP08]
gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile NAP07]
Length = 457
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 200/388 (51%), Gaps = 21/388 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILA--PNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+ + NGK++ +G +D I + N F AI G++ D H F+ Y
Sbjct: 4 LTIKELVLATNGKLI-YGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSA-YD 61
Query: 85 KGCVGVIGNQV----CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
GC I N+ + D ++V+ +T +L N++ Y + +F +GVTGS
Sbjct: 62 SGCKTFIKNESNGIKLESSDINLIEVK-----DTSLALGNISKYYK-EKFDIPFIGVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ MI A+ S +N+ ++ N NN GV L+L + + + AV+EMGMSG EI
Sbjct: 116 VGKTTTRDMIYSAI-SAKLNILKNEKNLNNHFGVPLTLFNLSKEHECAVIEMGMSGFNEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + P+I V+ N+G SH+E LGS E + +AK EI + ++N DD ++ L
Sbjct: 175 KYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDEANTLIVNGDDKFLSTL 234
Query: 261 TVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
V K+ FG+ + D+ + + L V+ ++E + IP+ G H NA
Sbjct: 235 KEKEHVYKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKEEI--FIPTIGEHNIYNA 292
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
+A V +SL + L NF +MR + ++ + I+ND+YNA+P S AA+ +
Sbjct: 293 MSAILVGLCLNISLDYIKKGLKNFKGTKMRLD-IIKNEKLTIINDSYNASPDSMDAALKI 351
Query: 380 LKDIACNGKRVVILGDMLELGSTERESH 407
L G+RV ILGD+LE+G H
Sbjct: 352 LG--RYKGRRVAILGDILEMGEISEYGH 377
>gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus champanellensis 18P13]
Length = 454
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/402 (33%), Positives = 197/402 (49%), Gaps = 18/402 (4%)
Query: 28 TINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
T+ EIA++V G + + I TDTR + P F A+ G FD H F + + +
Sbjct: 5 TLTEIAQAVGGTLSNCPDCAVTEISTDTRTITPGC--VFLALRGARFDGHTF-ARQACEQ 61
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G V VI + V D + V+ G +L+ A Y R +F VGVTGSVGK+T
Sbjct: 62 GAVAVISDHVIP--DCPCIVVDSTGK-----ALLAFAAYYRR-KFQPFFVGVTGSVGKTT 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK+MIAL L S ++ GN NN +G+ +L+G+D AV+EMGMS GEI L++
Sbjct: 114 TKNMIALVL-STHCKTLKTAGNLNNEIGLPKTLMGLDSTYKAAVVEMGMSDFGEISRLSK 172
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
A P I V+ N+G SH+ L S E + RAK EI V+N DDP + L
Sbjct: 173 AAAPSIGVITNIGFSHIAQLKSQEGICRAKLEILDGMAADAPLVVNGDDPYLIPLKTTLS 232
Query: 266 VRKVFFGWRR-GCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
+G + G D R NG + + + +P G H +N AA
Sbjct: 233 RPVYTYGIKNAGADCRAERIVSENGCTSFDLCWQG--TVTPVTLPCIGEHNVMNGAAAFC 290
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
+ L G+ ++ +L + P MR + ++ D YNA+P S RA++ +L ++
Sbjct: 291 IGMLAGMEPEEIAGALRTYQPDGMRQNIQ-QIDDKTVILDCYNASPDSMRASLSVLGQLS 349
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+R+ +LGDMLELG R+ H + A +DL+ G
Sbjct: 350 VTGRRIGVLGDMLELGEQSRQLHRMVGGLVTPAQVDLLFCYG 391
>gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanyl ligase
[Eubacterium rectale ATCC 33656]
gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanyl ligase
[Eubacterium rectale ATCC 33656]
Length = 464
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 190/351 (54%), Gaps = 14/351 (3%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F I G+ D H+FI P ++ +G V+ + +V VE +T +++ +A
Sbjct: 48 LFIPIKGERVDGHKFI-PTVFEQGAAIVLSEHELTDPAGPYVLVE-----STTDAMKKLA 101
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+ R S +VG+TGSVGK++TK MI+ LE +V ++ GN+NN +G+ L++ GI
Sbjct: 102 AFYRKS-LDIKVVGITGSVGKTSTKEMISSVLEQ-KYSVHKTAGNFNNEIGLPLTIFGIR 159
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ +AVLEMG+S GE+ L+ M+ P++ V+ N+G HLE LG + V +AK E F+
Sbjct: 160 ESHQVAVLEMGISDFGEMHRLSTMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHM 219
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR--LVAAQVANGGL-GVQVVLEK 299
V VLNADD +A + G +++G V + + N G G++
Sbjct: 220 MPDAVAVLNADDDKLATVQTVNGKPAIYYGKESASGVHKSVYTTNIENLGFDGMKAHFVT 279
Query: 300 EREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI 359
I PG H NA AAAAV G+++A++ + + R+ + + G+
Sbjct: 280 PEGEFDAHIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKSGIEKAETIAGRTNFIKTH-GM 338
Query: 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+++D YNANP+S +++I++L G+ + +LGDM ELGS E++ H ++
Sbjct: 339 TVIDDCYNANPVSMKSSIEVLSH--AKGRTIAVLGDMGELGSDEKKLHHEV 387
>gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium cellulovorans 743B]
Length = 395
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 222/417 (53%), Gaps = 43/417 (10%)
Query: 28 TINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+ ++ G ++ GP ++ DTR L K + AI G++FD ++F+ E
Sbjct: 5 TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLE--KGCIYIAIKGENFDGNDFV-VEAIN 61
Query: 85 KGCVGVIGNQVCNNW-----DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG I +++ V VE NT +L+ +A Y RN + ++GVTG
Sbjct: 62 KGAELCIIDKIAYTEAEVLNKSAIVLVE-----NTKKALMQLAKYYRN-KLDIKVIGVTG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK +IA AL S + VF++ GN+NN +G+ L + +D D+AVLEMGMS E
Sbjct: 116 STGKTSTKDLIAAAL-SEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFE 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L+ +ARP++ V+ N+G SH+E+L + E++ +AK EI ++ ++N DD ++
Sbjct: 175 IQRLSDVARPDLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLS- 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGG----LGVQVVLEKER-----EMVKFVIPS 310
T+ + + RL+ A +++ G +VL+++ KF IP
Sbjct: 234 -TIDK------------AEYRLIKASISDDKNIDLKGESLVLKEDSCEFKLNESKFYIPM 280
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
PG H NA A A A GV + N MR ++ ++ GI I+ND YNA+P
Sbjct: 281 PGKHNISNALLAIACARELGVEDQLINKGFLNIEATSMRLDIEKNK-GITIINDTYNASP 339
Query: 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S +AAI+++K++ +R+ ++G M ELG E H+++ + + +D++ +G+
Sbjct: 340 DSMKAAIEVMKNLKGK-RRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIGE 395
>gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens SM101]
gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens SM101]
Length = 453
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 217/412 (52%), Gaps = 29/412 (7%)
Query: 27 WTINEIAESVNGKILKWG---PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK + TDTR + + F A+ G++F+ + ++ E +
Sbjct: 4 LNLQEIVKATKGALLKEAYVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYV-LEAF 60
Query: 84 GKGC-VGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG + ++ C+ D ++V+ NT +L+++A + R + +VG+T
Sbjct: 61 NKGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTRRALMDLAKFYR-EKLGLKVVGIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G
Sbjct: 115 GSAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLG 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA +A P+ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 174 QIKELAEIASPDFGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLG 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHL 315
L P K+ G + ++ A +A L + + EKE E F + PG H
Sbjct: 234 AL--PNAEYKI-VKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+A GVS ++ L N MR E L+ + G I+ND YN++P++ ++
Sbjct: 288 ISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKS 346
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AID++K+I +R+ +LG M ELG E+HE+I Y + I+ + GD
Sbjct: 347 AIDVMKNIEGK-RRIAVLGTMRELGHKSEEAHEEIGKYSKENGIEKVLCFGD 397
>gi|334341862|ref|YP_004546842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum ruminis DSM 2154]
gi|334093216|gb|AEG61556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum ruminis DSM 2154]
Length = 462
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 131/407 (32%), Positives = 215/407 (52%), Gaps = 19/407 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++T+ EIA + G +L+ P ++ CTD+R F A+ GQ D H FI L
Sbjct: 3 VYTVKEIAGATGGILLQGDPSAVVRGVCTDSR--KAGSGDLFAALKGQQMDGHLFIGQAL 60
Query: 83 YGKGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG ++ ++V + +G VQV+ +TL +L +A Y R + + +V VTGS
Sbjct: 61 E-KGAGALLVSRVPDVVPEGVPVVQVQ-----DTLQALQQLARYNR-EQLNIPVVAVTGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK M+A L+ + N ++ GN+NN +G+ L+L+ + AV+EMGM G GEI
Sbjct: 114 NGKTSTKDMVAAVLQ-VRWNTLKTQGNFNNELGLPLTLLNLTEKHQAAVVEMGMRGPGEI 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A+P V+ N+G++HLE LGS+ ++A AKGE+ + +LN D P V L
Sbjct: 173 DFLAGLAKPTGAVITNIGETHLERLGSVHNIALAKGEVLEHIPQDGFALLNGDSPYVNEL 232
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
V + + + D+R A + + G GV+ + + +P PG H +N+
Sbjct: 233 AVRCQGQVWTYSLQGPADLR--AENIRSEGAGVRYKVTYPGGQGEIFLPVPGSHNVMNSL 290
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
A V G++ ++ L+ + MR E++ ++ ++NDAYNANP S AA+ +L
Sbjct: 291 GALGVGLRLGLTFEEIAAGLAQVTLTHMRLEIIQAQD-FMVINDAYNANPSSMEAALRVL 349
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ A G+++ +LG+M ELG H +A + + VGD
Sbjct: 350 AETA-RGRKIAVLGNMYELGKRTESGHRDTGKAAREAGVQKLVAVGD 395
>gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile QCD-66c26]
gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile QCD-76w55]
gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile QCD-97b34]
gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile QCD-37x79]
gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Clostridium difficile CD196]
gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Clostridium difficile R20291]
gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile QCD-32g58]
gi|384361872|ref|YP_006199724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Clostridium difficile BI1]
gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Clostridium difficile CD196]
gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
[Clostridium difficile R20291]
Length = 457
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 202/388 (52%), Gaps = 21/388 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILA--PNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+ + NGK++ +G +D I + + F AI G++ D H F+ P Y
Sbjct: 4 LTIKELVLATNGKLI-YGDYNDCVSDIVIDSREASAQNAFVAIVGENLDGHTFMKPA-YD 61
Query: 85 KGCVGVIGNQV----CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
GC I N+ + D ++V+ +T +L +++ Y + +F +GVTGS
Sbjct: 62 SGCKTFIKNESNGIKLESSDINLIEVK-----DTSLALGDISKYYK-EKFDIPFIGVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ MI A+ S +N+ ++ N NN GV L+L +++ + AV+EMGMSG EI
Sbjct: 116 VGKTTTRDMIYSAI-SAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + P+I V+ N+G SH+E LGS E + +AK EI + ++N DD ++ L
Sbjct: 175 KYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTL 234
Query: 261 TVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
V K+ FG+ + D+ + + L V+ ++E + IP+ G H NA
Sbjct: 235 KEKEHVYKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKEEI--FIPTIGEHNIYNA 292
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
+A V +SL + L NF +MR + ++ + I+ND+YNA+P S AA+ +
Sbjct: 293 MSAILVGLCLNISLDYIKKGLKNFKGTKMRLD-IIKNEKLTIINDSYNASPDSMDAALKI 351
Query: 380 LKDIACNGKRVVILGDMLELGSTERESH 407
L G+RV ILGD+LE+G H
Sbjct: 352 LG--RYKGRRVAILGDILEMGEISEYGH 377
>gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
sputigena ATCC 35185]
gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
sputigena ATCC 35185]
Length = 968
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 207/372 (55%), Gaps = 23/372 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR +A F A+ G+ FD +F + + KG GV+ D ++
Sbjct: 528 IVTDTRKIAAG--SLFVALQGERFDGADF-AAQAVEKGAAGVL-----VAVDTPEAKLPK 579
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G V +TL + +A R +FS +V +TGS GK+TTK + A L + + V ++
Sbjct: 580 TGVVLKAKDTLLAYQQIAAAWRR-KFSIPVVAITGSNGKTTTKDLTAAVLGAC-LLVQKT 637
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +G+ L+L+G+ A + AV+E+GM G G+I LA +A P + +V NVG+ H+E
Sbjct: 638 AANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAPTVAIVTNVGEVHMEL 697
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLV 282
LGS+E++ARAK E+ + + G +LNADD V + GVR V FG R DVR V
Sbjct: 698 LGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREKAKAGVRVVTFGLSRDADVRAV 757
Query: 283 AAQVANGGLGVQVVLEKER---EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGIS 339
A A GG+ + + ER E + +P PG H NA AA A A + G+SLA V
Sbjct: 758 AVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAAIAAARVLGLSLADVRRG 817
Query: 340 LSNFSPVQMRSELLVSRSG-IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLE 398
L+ +MR V + G VNDAYNA+P+STRA++ L ++ G+++ +LGDMLE
Sbjct: 818 LAVPPAQKMR--FAVEKCGAYTFVNDAYNASPVSTRASLKTLAEMFA-GRKIAVLGDMLE 874
Query: 399 LGSTERESHEKI 410
LGS + H +
Sbjct: 875 LGSASKSGHASV 886
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 85/399 (21%), Positives = 156/399 (39%), Gaps = 48/399 (12%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ T+ E+A V G +K I D+R + + F AI G H D H FI+ +
Sbjct: 3 MKTLAELAALVEGAEIKGDAAAKIADIVHDSREV--TEGTLFVAIEGLHVDGHSFIAQAV 60
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
C + ++ +G V N+ ++ + SR ++G+TG+ G
Sbjct: 61 EKGACAILTEREI--EIPEGAAAVLRVPNLAAALEVIVPFFHDYPSR-KMRIIGITGTNG 117
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV-------DIAVLEMG-- 193
K+TT M L G V +G + ++ D A+ D+ VLE
Sbjct: 118 KTTTSYMTRAILREAGYKV--------GLIGT-IQILVEDEALPIHNTTPDVVVLERTLA 168
Query: 194 -MSGKGE---ILELARMARPEIRVV---------LNVGDSHLESLGSLEDVARAKGEIF- 239
M+ +G ++E++ A + RV N+ HL+ +LE+ RAK +F
Sbjct: 169 YMARRGMDFVVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFD 228
Query: 240 ----QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295
+ +K G V+N DD + + + ++ +R A + G+++
Sbjct: 229 LVSRKGAKEGKTAVVNDDDAAGETMLAHAKCAHLTYAVKKEAALR--AENIRVHARGLEL 286
Query: 296 VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS 355
L + + G+ N +A A ++ + +L F V R EL+ +
Sbjct: 287 TLAGAFGRMDLSLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDA 346
Query: 356 RSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394
I+ D Y P ++ ++IA G+ + + G
Sbjct: 347 GQAFSIIVD-YAHTPDGLENILNTAREIAA-GRILTVFG 383
>gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
carboxidivorans P7]
gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium carboxidivorans P7]
gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium carboxidivorans P7]
gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
carboxidivorans P7]
gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium carboxidivorans P7]
gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium carboxidivorans P7]
Length = 462
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/419 (32%), Positives = 219/419 (52%), Gaps = 41/419 (9%)
Query: 27 WTINEIAESVNGKILKWG---PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T +EI +V GK++ G I TDTR + +K+ F A+ G++F+ +E+I
Sbjct: 4 MTFDEIVNAVQGKVVLQGNYEKFNQISTDTRKI--DKDDIFIALKGENFNGNEYIKV-AS 60
Query: 84 GKGCVGVIGNQVCNNWD---KG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G I +++ D KG ++VE +T +L+ +A RN + + ++G+T
Sbjct: 61 DNGASMCIIDEIKYREDEIEKGTTIIKVE-----DTKKALLQLAKAYRN-KLNLKVIGIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A AL S VF++ GN+NN +G+ L + +D + DIAVLEMGM+
Sbjct: 115 GSNGKTSTKDLLAAALSS-KYKVFKTQGNFNNEIGLPLMIFKLDNSYDIAVLEMGMNNLN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A A+P+I ++ NVG SH+ +LGS E++ +AK EI + ++N D+ L++
Sbjct: 174 EIHRMAEAAKPDIALITNVGVSHIGNLGSRENILKAKLEITDFFDKNSILIVNGDNDLLS 233
Query: 259 NLTVPRGVRKVFF-----GWRRG-----CDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
GV+ F G G CD+ L V V+ +K E F +
Sbjct: 234 ------GVKSNKFSIYTTGMENGNNLNACDIELKENFVE---FSVEENGKKFEET--FHV 282
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
PG H N+ A A + G+ + L N MR +L+ + I+ND YNA
Sbjct: 283 EIPGKHTISNSLLAIACGRILGMENKDIKEGLKNLQTTAMRMDLIKGKK-FNILNDCYNA 341
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
NP S +AAID+LK++ +R+ +LG M ELG +SH++I Y +DL+ G+
Sbjct: 342 NPDSMKAAIDVLKNVES-SRRIAVLGTMGELGEQSYKSHKEIGEYSAKNGVDLLLTFGE 399
>gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate/d-alanyl-d-alanyl ligase
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 448
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 128/400 (32%), Positives = 211/400 (52%), Gaps = 22/400 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA+++NG+ L+ ++ + I + N K+ F + G FD H+FI L
Sbjct: 3 LW-LSEIAKAINGE-LRSFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I + ++ +V+VE +TL +L ++ACY R +VGVTGSVGK
Sbjct: 61 N-GAISFISQKDFDDLKVPYVKVE-----DTLLALQSLACYVRRKLNHLKVVGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L SL F++ GN+NN +G+ +S++ + +AV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-SLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A+P+I V+ N+G +H+E+L S ++ AK EI + ++N D+ ++ NL
Sbjct: 174 SQIAKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDIL-NLHKK 232
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
RKV G + R Q G +V + I S H N+ A
Sbjct: 233 ELKRKVVTIGIENESNFRAQNVQRHQNGFSFEV------GGYTYFIESFNFHDIYNSLFA 286
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AV T+ GV + ++ ++ R E ++ + I IV+D YNA+ S +AID + +
Sbjct: 287 IAVGTILGVDRELIKEAIRQKERLKRRFE-VIKKGSITIVDDTYNASTHSMLSAIDSICE 345
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+GK++++LGDMLELG E H K+ Y ID++
Sbjct: 346 F--DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVV 383
>gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. 6_1_27]
gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. 6_1_27]
Length = 466
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/424 (33%), Positives = 208/424 (49%), Gaps = 24/424 (5%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
SN +T++++ E+ G + TDTR + F A+ G FD H+FI+
Sbjct: 13 SNMAEFTLSQVLEATKGTSAHTDNIKFLDVSTDTRTI--ESGFLFVALKGDTFDGHDFIN 70
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV---NMACYARNSRFSGVLVG 136
+ KG G I +KG VEG + N+LV N+A Y R RF +V
Sbjct: 71 AAIE-KGATGAI-------VEKG-RSVEGIACIEVDNTLVAYQNLARYHRR-RFDIPVVA 120
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
+TGS GK+TTK M+A L NV ++ N+NN +G+ +L+ + + V+EMGM G
Sbjct: 121 ITGSSGKTTTKEMVAAVL-GTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRG 179
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
G+I ELA +A P + ++ NVG SH+E LGS E +A AKGE+ + V +LN DDP
Sbjct: 180 LGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPY 239
Query: 257 VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
V + + + +G R + + + + G++ + E+ +P G H
Sbjct: 240 VKAMDRLAKGKTITYGIER--NATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNV 297
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
+A AA + G+ + LS FS MR E +V I I+NDAYNANP S A
Sbjct: 298 YDALAAIVAGRVLGIKSNTIRKGLSEFSGTPMRQE-IVPFEDIVILNDAYNANPSSMAEA 356
Query: 377 IDLLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKW 435
I L + GKR + +LGDMLELG E+H +I + ++ GD K
Sbjct: 357 IKALGQL--EGKRKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKE 414
Query: 436 RKWS 439
K +
Sbjct: 415 AKKA 418
>gi|217959727|ref|YP_002338279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH187]
gi|229138919|ref|ZP_04267498.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST26]
gi|423352023|ref|ZP_17329650.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus IS075]
gi|423568854|ref|ZP_17545101.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-A12]
gi|217065505|gb|ACJ79755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus AH187]
gi|228644544|gb|EEL00797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST26]
gi|401092933|gb|EJQ01056.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus IS075]
gi|401208684|gb|EJR15445.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-A12]
Length = 460
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 191/359 (53%), Gaps = 18/359 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D HE++ E G V + + KG FV +TL +L +A + R
Sbjct: 57 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGIPIIFVD-------DTLFALQQLAQFYRR- 107
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ ++R +
Sbjct: 108 EINVKVIGITGSNGKTTVKDIIGSILSST-YRVHKTKGNFNSQIGLPLTILEMERNTEFL 166
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+R+A+P++ ++ +G SHLE+LGS E++A+AK EI +
Sbjct: 167 ILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLF 226
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+PL++ G+ FG + D+ Q+ G+ ++ K +++ +
Sbjct: 227 LYNGDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSK----IQYDV 282
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H N AV + VS ++ +L + QMR + L +++G I+NDA+NA
Sbjct: 283 PLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNA 342
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
NP S +AAI+ L+ + K+++++GDMLELG H +I + I + G+
Sbjct: 343 NPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGE 401
>gi|222095812|ref|YP_002529869.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
[Bacillus cereus Q1]
gi|221239870|gb|ACM12580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
[Bacillus cereus Q1]
Length = 451
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 191/359 (53%), Gaps = 18/359 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D HE++ E G V + + KG FV +TL +L +A + R
Sbjct: 48 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGIPIIFVD-------DTLFALQQLAQFYRR- 98
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ ++R +
Sbjct: 99 EINVKVIGITGSNGKTTVKDIIGSILSST-YRVHKTKGNFNSQIGLPLTILEMERNTEFL 157
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+R+A+P++ ++ +G SHLE+LGS E++A+AK EI +
Sbjct: 158 ILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLF 217
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+PL++ G+ FG + D+ Q+ G+ ++ K +++ +
Sbjct: 218 LYNGDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSK----IQYDV 273
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H N AV + VS ++ +L + QMR + L +++G I+NDA+NA
Sbjct: 274 PLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNA 333
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
NP S +AAI+ L+ + K+++++GDMLELG H +I + I + G+
Sbjct: 334 NPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGE 392
>gi|206975323|ref|ZP_03236237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus H3081.97]
gi|206746744|gb|EDZ58137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus H3081.97]
Length = 460
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 191/359 (53%), Gaps = 18/359 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D HE++ E G V + + KG FV +TL +L +A + R
Sbjct: 57 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGIPIIFVD-------DTLFALQQLAQFYRR- 107
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ ++R +
Sbjct: 108 EINVKVIGITGSNGKTTVKDIIGSILSST-YRVHKTKGNFNSQIGLPLTILEMERNTEFL 166
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+R+A+P++ ++ +G SHLE+LGS E++A+AK EI +
Sbjct: 167 ILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLF 226
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+PL++ G+ FG + D+ Q+ G+ ++ K +++ +
Sbjct: 227 LYNGDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSK----IQYDV 282
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H N AV + VS ++ +L + QMR + L +++G I+NDA+NA
Sbjct: 283 PLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNA 342
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
NP S +AAI+ L+ + K+++++GDMLELG H +I + I + G+
Sbjct: 343 NPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGE 401
>gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens CPE str. F4969]
gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens CPE str. F4969]
Length = 456
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 220/412 (53%), Gaps = 29/412 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++ E +
Sbjct: 7 LNLQEIVKATKGVLLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYV-LEAF 63
Query: 84 GKGC-VGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG + ++ C+ D ++V+ NT +L+++A + R + +VG+T
Sbjct: 64 NKGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G
Sbjct: 118 GSAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLG 176
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA +A P++ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 177 QIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLG 236
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHL 315
+L P K+ G + ++ A +A L + + EKE E F + PG H
Sbjct: 237 SL--PSAEYKI-VKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHN 290
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+A GVS ++ L+N MR E L+ + G I+ND YN++P++ ++
Sbjct: 291 ISNLMLGIAIAKELGVSFEEMKRGLNNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKS 349
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AID++K+I +R+ +LG M ELG E+HE+I Y + I+ + GD
Sbjct: 350 AIDVMKNIEGK-RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 400
>gi|220918992|ref|YP_002494296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219956846|gb|ACL67230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 468
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 209/396 (52%), Gaps = 16/396 (4%)
Query: 20 CPSNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEF 77
P ++P +T +E+A + G+ L P + + TDTR L+P Q F A+ G+ FDAH+
Sbjct: 3 TPRSTPQFTPDELAGATRGRWLGAPPSAVAGVSTDTRTLSPG--QLFVALKGERFDAHDH 60
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR--FSGVLV 135
+ V+ + + L + AR+ R F ++
Sbjct: 61 LEAAAAAGAAALVVSEAWAAAHPAPPRA-----ALAVADPLAALGAIARHHRCRFGIPVI 115
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
GVTGS GK+TT+ MIA L + G V ++ GN NN VGV L+L G++ A AV+EMGM+
Sbjct: 116 GVTGSNGKTTTREMIAAILATRG-PVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMN 174
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI LA +A+P++ VV +HLE LG+++ VA AK E+++ G + V+NADD
Sbjct: 175 HPGEIARLAAIAQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADDA 234
Query: 256 LVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPS-PGL 313
+ V G R + F RG +V +V + + G++ VL V IP G
Sbjct: 235 RMLKRGVASGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGA 294
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H A NA AAA A G + ++ L+ PV R L SG+++V+D YNANP S
Sbjct: 295 HNARNAAAAACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANPASM 354
Query: 374 RAAIDLLKDI--ACNGKRVVILGDMLELGSTERESH 407
AA+D+L+D+ A + +LGDMLELG+ E E+H
Sbjct: 355 SAALDVLRDLAAAPGARAFAVLGDMLELGAFEAEAH 390
>gi|375284235|ref|YP_005104673.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus NC7401]
gi|358352761|dbj|BAL17933.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
cereus NC7401]
Length = 454
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 191/359 (53%), Gaps = 18/359 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D HE++ E G V + + KG FV +TL +L +A + R
Sbjct: 51 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGIPIIFVD-------DTLFALQQLAQFYRR- 101
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ ++R +
Sbjct: 102 EINVKVIGITGSNGKTTVKDIIGSILSST-YRVHKTKGNFNSQIGLPLTILEMERNTEFL 160
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+R+A+P++ ++ +G SHLE+LGS E++A+AK EI +
Sbjct: 161 ILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLF 220
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+PL++ G+ FG + D+ Q+ G+ ++ K +++ +
Sbjct: 221 LYNGDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSK----IQYDV 276
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H N AV + VS ++ +L + QMR + L +++G I+NDA+NA
Sbjct: 277 PLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNA 336
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
NP S +AAI+ L+ + K+++++GDMLELG H +I + I + G+
Sbjct: 337 NPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGE 395
>gi|423372167|ref|ZP_17349507.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus AND1407]
gi|401099798|gb|EJQ07798.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus AND1407]
Length = 460
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 192/355 (54%), Gaps = 10/355 (2%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG 132
D HE++ E G V + + KGF + + +TL +L +A + R +
Sbjct: 57 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGFPIIFVD---DTLFALQQLAQFYRR-EINV 111
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ ++R + +LEM
Sbjct: 112 KVIGITGSNGKTTVKDIIGSILSST-YRVHKTKGNFNSQIGLPLTILEMERDTEFLILEM 170
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GMS KG+I L+R+A+P++ ++ +G SHLE+LGS E++A+AK EI G + + N
Sbjct: 171 GMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDGGLFLYNG 230
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
D+PL++ G+ FG + D+ Q+ G+ ++ K +++ +P G
Sbjct: 231 DEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSK----IQYDVPLYG 286
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H N AV + V ++ +L + QMR + L +++G I+NDA+NA+P S
Sbjct: 287 KHNIFNTIVGIAVGQFYKVPTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNASPSS 346
Query: 373 TRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+AAI+ L+ + K+++++GDMLELG H +I + I + G+
Sbjct: 347 MKAAIETLQKLNAYKKKMIVIGDMLELGKKGETYHREIGKMLNEESIQYVFTYGE 401
>gi|389580282|ref|ZP_10170309.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfobacter postgatei 2ac9]
gi|389401917|gb|EIM64139.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfobacter postgatei 2ac9]
Length = 1000
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 221/427 (51%), Gaps = 40/427 (9%)
Query: 9 TLACTSKTTFRCPSNSPIWTINEIAESVN-GKILKWGPPGI----------ICTDTRILA 57
T ACT+ T R W + +++ ++ + WG + I TD+R ++
Sbjct: 505 TNACTNALTPRP------WDLADLSNAIGCDAVTVWGQKTVTDVKRAVFKGISTDSRTIS 558
Query: 58 PNKNQWFFAITGQHFDAHEFISPELYGKGC-VGVIGNQVCNNWDKGFVQVEGNGNV---- 112
P+ F A+ G+HFD H FI P+L KG V V+ N +D ++ V
Sbjct: 559 PD--MVFLALAGEHFDGHNFI-PDLAEKGIIVFVVRQGYLNTFDLNQKRLMDKPRVCFFE 615
Query: 113 --NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNN 170
+TL +L +A Y R R + + +TGS GK++T+ M A + SL + + GN NN
Sbjct: 616 VPDTLAALGRLARYHR-MRSNARVAALTGSNGKTSTRKM-AEEIFSLHHDTLATQGNLNN 673
Query: 171 RVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLED 230
+G+ +L+ + + AV+EMGMS GEI L+ +A+P+I ++ N SH++ LGSL++
Sbjct: 674 EIGLPQTLLRLADIHEWAVVEMGMSNPGEIARLSAIAKPDIALITNTHGSHMQGLGSLDN 733
Query: 231 VARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK-------VFFGWRRGCDVRLVA 283
VARAK EIF+ G +L ADDP + L +G R+ + FG + DVRL
Sbjct: 734 VARAKAEIFKGLNPGGTAILFADDPRLEILV--QGARENPTTGSVMLFGTQSKSDVRLSE 791
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+ + + ++ ++ +PSP +A NA AAAA+A G+ + L F
Sbjct: 792 INTTDHRITFSLTIDGHAR--QYALPSPAAFMAFNAAAAAALAKAAGIDETDIAQGLEAF 849
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
PV+ R L +GI +++D YNANP S A+ +L +A + + + +LGDMLELG
Sbjct: 850 VPVKGRMRLRHLDNGIHLIDDTYNANPCSMNQALQVLNRLAGSNRGIAVLGDMLELGDQT 909
Query: 404 RESHEKI 410
+ H ++
Sbjct: 910 QLHHRQV 916
>gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens ATCC 13124]
gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens ATCC 13124]
Length = 453
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 214/411 (52%), Gaps = 27/411 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGA 234
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHLA 316
L P K+ G + ++ A +A L + + EKE E F + PG H
Sbjct: 235 L--PEAEYKI-VKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHNI 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
N A+A GVS ++ L N MR E L+ + G I+ND YN++P++ ++A
Sbjct: 289 SNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKSA 347
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
ID++K+I +R+ +LG M ELG E+HE+I Y + I+ + GD
Sbjct: 348 IDVMKNIEGK-RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397
>gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens B str. ATCC 3626]
gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens B str. ATCC 3626]
Length = 453
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 214/411 (52%), Gaps = 27/411 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGA 234
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHLA 316
L P K+ G + ++ A +A L + + EKE E F + PG H
Sbjct: 235 L--PEAEYKI-VKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHNI 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
N A+A GVS ++ L N MR E L+ + G I+ND YN++P++ ++A
Sbjct: 289 SNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKSA 347
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
ID++K+I +R+ +LG M ELG E+HE+I Y + I+ + GD
Sbjct: 348 IDVMKNIEGK-RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397
>gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
proteobacterium MLMS-1]
Length = 496
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 220/423 (52%), Gaps = 21/423 (4%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEF 77
+P+WT++++ + G++ WG +I TD+R + F A+ G++FDA +F
Sbjct: 30 QNPVWTLSQVLLATGGRL--WGDRTQAAFRLISTDSRTI--EAGDLFVALRGENFDAQQF 85
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
++ E KG G++ Q V V +TL +L ++A Y R ++ +
Sbjct: 86 VA-EAVAKGAAGLVLEQPPVE----PVPVPVVLVPDTLAALGDLAHYRRCRMRELQVLAI 140
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+T K M A L+ V ++ GN NN VG+ LSL+ ++ + AVLEMGM+
Sbjct: 141 TGSSGKTTVKEMTATILQRRQ-QVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRP 199
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI +A +A P+I + NV ++HL L ++ VARAKGE+F V+N DD V
Sbjct: 200 GEIARMAEIALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRV 259
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L G +++ +G R VR + + G+ + ++ R+ V+ + + G H
Sbjct: 260 RRLAARTGQQRITYGRTRNARVRATYIRSLGEAGMSFTLTIDDWRQRVR--LAALGEHNV 317
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
NA AAAA+AT GVS A++ L+ + P R +L +G+K+++D YNANP S AA
Sbjct: 318 SNALAAAALATAAGVSPAEIAAGLAAYRPFAKRMQLQPFIAGLKLIDDTYNANPSSMLAA 377
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD---RVVVQC 433
+ + ++ + V +LGDMLELG +H I D + VG+ +VV
Sbjct: 378 LATVHNLRRQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVAAA 437
Query: 434 KWR 436
+ R
Sbjct: 438 RHR 440
>gi|407973665|ref|ZP_11154576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitratireductor indicus C115]
gi|407430725|gb|EKF43398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitratireductor indicus C115]
Length = 474
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 211/414 (50%), Gaps = 19/414 (4%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT ++A++ G+ L P GI + DTR L P FFAI G+ FD H+F +
Sbjct: 2 SVLWTFEQLAQATGGRPLGSVPSGITGVSIDTRSLKPG--DAFFAIQGERFDGHDFATAA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V V+ G + V + L +L ++ AR R ++ VTGS
Sbjct: 60 MAAGASVLVVSEGKLPAL--GRLAVAKLVVPDVLKALEDLGRAARE-RTKAKVIAVTGSA 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK M+ A ++G V + ++NN GV L+L + D AV+E+GM+ GEI
Sbjct: 117 GKTSTKEMMRQAFSAVG-TVHAADRSFNNHWGVPLTLARMPADCDYAVIEIGMNHPGEIR 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVA 258
L MARP I VV + +H+ SL+++ARAK EIF+ G ++N DD +++
Sbjct: 176 PLVAMARPHIAVVTLIAAAHMGFFKSLDEIARAKAEIFEGVVKGGYALINRDDKRWKILS 235
Query: 259 NLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
L GV+ ++ FG +V+L+ A++ G + ++ + E ++ + +PG H+
Sbjct: 236 TLAAEAGVKNIWGFGENARSEVKLLHAEL--GPQSSTLAVKIDGEEIEARLGAPGRHMVQ 293
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPISTR 374
NA + A + G L +V ++L +F R L V +++++YNANP S
Sbjct: 294 NALSVLGAAKIAGADLQRVALALGSFRAEAGRGQRHRLRVGSGSFTLIDESYNANPASMS 353
Query: 375 AAIDLL--KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
AA DLL ++ G+R+ ILGDM ELG + H + + D++ L G
Sbjct: 354 AAFDLLGKSELGAGGRRIAILGDMAELGEHSHKLHAGLSDLVTGSKTDMVFLAG 407
>gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus pseudomycoides DSM 12442]
gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus pseudomycoides DSM 12442]
Length = 458
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 193/368 (52%), Gaps = 21/368 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---NWDKGFVQ 105
+ DTR + + I G FD H F+ + + V N N FV+
Sbjct: 30 VSIDTRKITTG--NLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNPPVNIPVIFVE 87
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+TL +L +A R+ + ++GVTGS GK++TK ++ +L + V ++
Sbjct: 88 -------DTLEALQTLAKSYRD-QLDVKVIGVTGSNGKTSTKDIVT-SLLATKFKVQKTE 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++ARP ++ N+G++HL L
Sbjct: 139 GNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---GVRKVFFGWRRGCDVRLV 282
GS + +A AK EI + G V V N D+PL+ N VP + FG R +
Sbjct: 199 GSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTN-RVPSMNLAAETITFGDARANNYYPT 257
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ + G ++ + E V F +P G H N A+ A+A FGV+ ++ L
Sbjct: 258 SVTLQATGTYFKM---NQDENVVFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKQGLVT 314
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
MR E++ + +G+ I+NDAYNA+P + AA L+ + K++V+LGDMLELG
Sbjct: 315 LQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQ 374
Query: 403 ERESHEKI 410
E + H ++
Sbjct: 375 EVQFHYEV 382
>gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Veillonella parvula DSM 2008]
gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Veillonella parvula
DSM 2008]
Length = 452
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 135/395 (34%), Positives = 197/395 (49%), Gaps = 22/395 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + F A+ G FD H+FI+ + KG G I +KG VEG
Sbjct: 28 ISTDTRTI--ESGFLFVALKGDTFDGHDFINTAIE-KGATGAI-------VEKGRA-VEG 76
Query: 109 NGNVNTLNSLV---NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ N+LV N+A Y R RF +V +TGS GK+TTK M+A L NV ++
Sbjct: 77 IACIEVDNTLVAYQNLARYHRR-RFDIPVVAITGSSGKTTTKEMVAAVL-GTEFNVLKTE 134
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N+NN +G+ +L+ + + V+EMGM G G+I ELA +A P + ++ NVG SH+E L
Sbjct: 135 KNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELL 194
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
GS E +A AKGE+ + V +LN DDP V + + + +G R + + +
Sbjct: 195 GSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKGKTITYGIER--NATCIGSH 252
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
+ G++ + E+ +P G H +A AA + G+ + LS F+
Sbjct: 253 LRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTG 312
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTER 404
MR E +V I I+NDAYNANP S AI L + GKR + +LGDMLELG
Sbjct: 313 TPMRQE-IVPFEDIVILNDAYNANPSSMAEAIKALGQL--EGKRKIAMLGDMLELGDFSE 369
Query: 405 ESHEKILSYCCDACIDLIGLVGDRVVVQCKWRKWS 439
E+H +I + ++ GD K K +
Sbjct: 370 EAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKA 404
>gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sputigena ATCC
35185]
gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase [Selenomonas sputigena ATCC
35185]
Length = 966
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 207/372 (55%), Gaps = 23/372 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR +A F A+ G+ FD +F + + KG GV+ D ++
Sbjct: 526 IVTDTRKIAAG--SLFVALQGERFDGADF-AAQAVEKGAAGVL-----VAVDTPEAKLPK 577
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G V +TL + +A R +FS +V +TGS GK+TTK + A L + + V ++
Sbjct: 578 TGVVLKAKDTLLAYQQIAAAWRR-KFSIPVVAITGSNGKTTTKDLTAAVLGAC-LLVQKT 635
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +G+ L+L+G+ A + AV+E+GM G G+I LA +A P + +V NVG+ H+E
Sbjct: 636 AANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAPTVAIVTNVGEVHMEL 695
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLV 282
LGS+E++ARAK E+ + + G +LNADD V + GVR V FG R DVR V
Sbjct: 696 LGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREKAKAGVRVVTFGLSRDADVRAV 755
Query: 283 AAQVANGGLGVQVVLEKER---EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGIS 339
A A GG+ + + ER E + +P PG H NA AA A A + G+SLA V
Sbjct: 756 AVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAAIAAARVLGLSLADVRRG 815
Query: 340 LSNFSPVQMRSELLVSRSG-IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLE 398
L+ +MR V + G VNDAYNA+P+STRA++ L ++ G+++ +LGDMLE
Sbjct: 816 LAVPPAQKMR--FAVEKCGAYTFVNDAYNASPVSTRASLKTLAEMFA-GRKIAVLGDMLE 872
Query: 399 LGSTERESHEKI 410
LGS + H +
Sbjct: 873 LGSASKSGHASV 884
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 85/399 (21%), Positives = 156/399 (39%), Gaps = 48/399 (12%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ T+ E+A V G +K I D+R + + F AI G H D H FI+ +
Sbjct: 1 MKTLAELAALVEGAEIKGDAAAKIADIVHDSREV--TEGTLFVAIEGLHVDGHSFIAQAV 58
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
C + ++ +G V N+ ++ + SR ++G+TG+ G
Sbjct: 59 EKGACAILTEREI--EIPEGAAAVLRVPNLAAALEVIVPFFHDYPSR-KMRIIGITGTNG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV-------DIAVLEMG-- 193
K+TT M L G V +G + ++ D A+ D+ VLE
Sbjct: 116 KTTTSYMTRAILREAGYKV--------GLIGT-IQILVEDEALPIHNTTPDVVVLERTLA 166
Query: 194 -MSGKGE---ILELARMARPEIRVV---------LNVGDSHLESLGSLEDVARAKGEIF- 239
M+ +G ++E++ A + RV N+ HL+ +LE+ RAK +F
Sbjct: 167 YMARRGMDFVVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFD 226
Query: 240 ----QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295
+ +K G V+N DD + + + ++ +R A + G+++
Sbjct: 227 LVSRKGAKEGKTAVVNDDDAAGETMLAHAKCAHLTYAVKKEAALR--AENIRVHARGLEL 284
Query: 296 VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS 355
L + + G+ N +A A ++ + +L F V R EL+ +
Sbjct: 285 TLAGAFGRMDLSLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDA 344
Query: 356 RSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394
I+ D Y P ++ ++IA G+ + + G
Sbjct: 345 GQAFSIIVD-YAHTPDGLENILNTAREIAA-GRILTVFG 381
>gi|422874781|ref|ZP_16921266.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens F262]
gi|380304422|gb|EIA16711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens F262]
Length = 453
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 218/412 (52%), Gaps = 29/412 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++ + +
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYV-LDAF 60
Query: 84 GKGC-VGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG + ++ C+ D ++V+ NT +L+++A + R + +VG+T
Sbjct: 61 NKGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G
Sbjct: 115 GSAGKTSTKDLVAAVL-SYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLG 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA +A P++ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 174 QIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLG 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHL 315
L P K+ G + ++ A +A L + + EKE E F + PG H
Sbjct: 234 AL--PEAEYKI-VKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+A GVS ++ L N MR E L+ + G I+ND YN++P++ ++
Sbjct: 288 ISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKS 346
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AID++K+I +R+ +LG M ELG E+HE+I Y + I+ + GD
Sbjct: 347 AIDVMKNIEGK-RRMAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397
>gi|384455962|ref|YP_005668557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|346984305|dbj|BAK79981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
Length = 465
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 204/398 (51%), Gaps = 33/398 (8%)
Query: 29 INEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG- 84
I EI + V G +L + I DTR + N F AI G++FD +++I +
Sbjct: 16 IEEIVKCVFGDLLIKGTYREFNKISIDTRTI--NDQDIFLAIRGENFDGNKYIFDAIKKG 73
Query: 85 -KGCV---GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
K C+ ++ + +D + V+ NTL +L N+A Y R S+ L+ VTGS
Sbjct: 74 VKLCIIDRNYFVDKEFDPYDVSIILVD-----NTLEALNNLAIYVR-SKLDIDLIAVTGS 127
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +I L S V++S+GN NN +G+ +SL+ ID +I V E+GM+ GEI
Sbjct: 128 VGKTTTKDLIYDFLSS-NYKVYKSFGNLNNHLGMPMSLVNIDDDAEIGVFEVGMNKMGEI 186
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV--- 257
L + RP I V+ N+G SH+E L + E++ +AK EI D+ ++N +D L+
Sbjct: 187 DHLVSILRPHIGVITNIGVSHIEFLKTKENIFKAKMEIVNYFDQDDILIVNNEDDLLKTV 246
Query: 258 --ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
++ V R G+ CD+ +++ + V+ + E V +P G H
Sbjct: 247 QSSDFIVSR------IGFSEECDMYASNEEISLNKIKFDVLYNGKNETV--ALPINGKHN 298
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
+N+ A + +F + + V + +P MR E ++ I I+ND YNA+P S ++
Sbjct: 299 VLNSLIAFKLCEIFNIPMDVVRNKFDSLTPASMRQE-IIKYKDITIINDCYNASPTSIKS 357
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSY 413
A+D+L ++V ILGDM E+G + + +I Y
Sbjct: 358 ALDILS--LYQNEKVCILGDMAEIGEFADKYYREISEY 393
>gi|357058721|ref|ZP_09119568.1| hypothetical protein HMPREF9334_01285 [Selenomonas infelix ATCC
43532]
gi|355373512|gb|EHG20830.1| hypothetical protein HMPREF9334_01285 [Selenomonas infelix ATCC
43532]
Length = 468
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 193/367 (52%), Gaps = 14/367 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + F A+ G++FD EF + L ++G + + +K +G
Sbjct: 30 ITTDTRKI--ETGDLFIALRGENFDGAEFAADALQKGASAVLVGVPLSKSVEKALKNAKG 87
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
NTL + +A +A +F +V +TGS GK+TTK + A L + G V ++
Sbjct: 88 AVLTVSNTLAAYQAIA-HAWRMKFGVPVVAITGSNGKTTTKDLTAAVLSARG-TVCRTAA 145
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN VG+ L+L+G+ AV+E+GM G G+I LA +A P I +V NV + H+E LG
Sbjct: 146 NYNNEVGLPLTLLGMTSGDVAAVVEIGMRGLGQIAALAPVAAPSIGIVTNVCEVHMELLG 205
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRGVRKVFFGWRRGCDVRLVAA 284
S+E++A+AK E+ Q G +LNADD VA + GVR + +G DVR A
Sbjct: 206 SIENIAKAKAELVQAIPAGGTVILNADDARVAAMRSLAADGVRVLTYGIGADADVRAEAL 265
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
++ + G V ER + IP G H NA AA A + G + ++ L +
Sbjct: 266 RLTSDGSQFMVTWNNERH--DYSIPLAGRHNVSNALAAFAAGFVLGYTPQEMQTGLQRLA 323
Query: 345 PVQMRSELLVSRSGI-KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
+MR E V G +NDAYNA+P S AA++ ++ G+++ +LGDMLELG
Sbjct: 324 VTKMRYE--VHEVGAWTFINDAYNASPSSMAAALETTANL-YEGRKIAVLGDMLELGDAA 380
Query: 404 RESHEKI 410
E+H +I
Sbjct: 381 EEAHRRI 387
>gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides Rock3-17]
gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides Rock3-17]
Length = 458
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 197/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---NWDKGFVQ 105
+ DTR + + I G FD H F+ + + V N N FV+
Sbjct: 30 VSIDTRKITTG--NLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNPPVNIPVIFVE 87
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+TL +L +A R+ + ++GVTGS GK++TK ++ +L + V ++
Sbjct: 88 -------DTLEALQTLAKSYRD-QLDVKVIGVTGSNGKTSTKDIVT-SLLATKFKVQKTE 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++ARP ++ N+G++HL L
Sbjct: 139 GNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---GVRKVFFGWRRGCDVRLV 282
GS + +A AK EI + G V V N D+PL+ N VP + FG R +
Sbjct: 199 GSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTN-RVPSMNLAAETITFGDARANNYYPT 257
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ + G ++ + E + F +P G H N A+ A+A FGV+ ++ L
Sbjct: 258 SVTLQATGTYFKM---NQDENIVFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKQGLVT 314
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
MR E++ + +G+ I+NDAYNA+P + AA L+ + K++V+LGDMLELG
Sbjct: 315 LQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQ 374
Query: 403 ERESHEKILSYCCDACIDLIGLVG 426
E + H ++ A I + G
Sbjct: 375 EVQFHYEVGKLIDPARISYVFTYG 398
>gi|423081334|ref|ZP_17069942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 002-P50-2011]
gi|423084607|ref|ZP_17073107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 050-P50-2011]
gi|423092693|ref|ZP_17080497.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 70-100-2010]
gi|357551000|gb|EHJ32804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 002-P50-2011]
gi|357552177|gb|EHJ33952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 050-P50-2011]
gi|357553563|gb|EHJ35310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 70-100-2010]
Length = 457
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 201/388 (51%), Gaps = 21/388 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILA--PNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+ + NGK++ +G +D I + N F AI G++ D H F+ Y
Sbjct: 4 LTIKELVLATNGKLI-YGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSA-YD 61
Query: 85 KGCVGVIGNQV----CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
GC I N+ + D ++V+ +T +L +++ Y + +F +GVTGS
Sbjct: 62 SGCKTFIKNESNGIKLESSDINLIEVK-----DTSLALGDISKYYK-EKFDIPFIGVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ MI A+ S +N+ ++ N NN GV L+L +++ + AV+EMGMSG EI
Sbjct: 116 VGKTTTRDMIYSAI-SAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + P+I V+ N+G SH+E LGS E + +AK EI + ++N DD ++ L
Sbjct: 175 KYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTL 234
Query: 261 TVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
V K+ FG+ + DV + + L V+ ++E + IP+ G H NA
Sbjct: 235 KEKEHVYKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKEEI--FIPTIGEHNIYNA 292
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
+A V +SL + L NF +MR + ++ + I+ND+YNA+P S AA+ +
Sbjct: 293 MSAILVGLCLNISLDYIKKGLKNFKGTKMRLD-IIKNEKLTIINDSYNASPDSMDAALKI 351
Query: 380 LKDIACNGKRVVILGDMLELGSTERESH 407
L G+RV ILGD+LE+G H
Sbjct: 352 LG--RYKGRRVAILGDILEMGEISEYGH 377
>gi|423606035|ref|ZP_17581928.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD102]
gi|401243390|gb|EJR49761.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD102]
Length = 460
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 192/359 (53%), Gaps = 18/359 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D HE++ E G V + + KG FV +TL +L +A + R
Sbjct: 57 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGIPIIFVD-------DTLFALQQLAQFYRR- 107
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ ++R +
Sbjct: 108 EINVKVIGITGSNGKTTVKDIIGSILSST-YRVHKTKGNFNSQIGLPLTILEMERNTEFL 166
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+R+A+P++ ++ +G SHLE+LGS E++A+AK EI G +
Sbjct: 167 ILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDGGLF 226
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+PL++ G+ FG + D+ Q+ G+ ++ K +++ +
Sbjct: 227 LYNGDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHTK----IQYDV 282
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H N AV + V + ++ +L + QMR + L +++G I+NDA+NA
Sbjct: 283 PLHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNA 342
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+P S +AAI+ L+ + K+++++GDMLELG H +I + I + G+
Sbjct: 343 SPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKNGETYHREIGKMLNEESIQYVFTYGE 401
>gi|342732567|ref|YP_004771406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|417960709|ref|ZP_12603251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-2]
gi|417969087|ref|ZP_12610049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-co]
gi|418016027|ref|ZP_12655592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-
D-alanine ligase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372823|ref|ZP_12964915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330022|dbj|BAK56664.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345506362|gb|EGX28656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-
D-alanine ligase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|380335284|gb|EIA25517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-2]
gi|380338456|gb|EIA27343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-co]
gi|380342492|gb|EIA30937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 454
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 204/398 (51%), Gaps = 33/398 (8%)
Query: 29 INEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG- 84
I EI + V G +L + I DTR + N F AI G++FD +++I +
Sbjct: 5 IEEIVKCVFGDLLIKGTYREFNKISIDTRTI--NDQDIFLAIRGENFDGNKYIFDAIKKG 62
Query: 85 -KGCV---GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
K C+ ++ + +D + V+ NTL +L N+A Y R S+ L+ VTGS
Sbjct: 63 VKLCIIDRNYFVDKEFDPYDVSIILVD-----NTLEALNNLAIYVR-SKLDIDLIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +I L S V++S+GN NN +G+ +SL+ ID +I V E+GM+ GEI
Sbjct: 117 VGKTTTKDLIYDFLSS-NYKVYKSFGNLNNHLGMPMSLVNIDDDAEIGVFEVGMNKMGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV--- 257
L + RP I V+ N+G SH+E L + E++ +AK EI D+ ++N +D L+
Sbjct: 176 DHLVSILRPHIGVITNIGVSHIEFLKTKENIFKAKMEIVNYFDQDDILIVNNEDDLLKTV 235
Query: 258 --ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
++ V R G+ CD+ +++ + V+ + E V +P G H
Sbjct: 236 QSSDFIVSR------IGFSEECDMYASNEEISLNKIKFDVLYNGKNETV--ALPINGKHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
+N+ A + +F + + V + +P MR E ++ I I+ND YNA+P S ++
Sbjct: 288 VLNSLIAFKLCEIFNIPMDVVRNKFDSLTPASMRQE-IIKYKDITIINDCYNASPTSIKS 346
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSY 413
A+D+L ++V ILGDM E+G + + +I Y
Sbjct: 347 ALDILS--LYQNEKVCILGDMAEIGEFADKYYREISEY 382
>gi|392960451|ref|ZP_10325919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans DSM 17108]
gi|421054793|ref|ZP_15517758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans B4]
gi|421071655|ref|ZP_15532771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans A11]
gi|392440474|gb|EIW18154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans B4]
gi|392446920|gb|EIW24191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans A11]
gi|392455028|gb|EIW31835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Pelosinus
fermentans DSM 17108]
Length = 452
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 142/409 (34%), Positives = 217/409 (53%), Gaps = 26/409 (6%)
Query: 27 WTINEIAESVNGK-ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T+ E+ + G I+ P G + TDTR + K F + G++FD HEFI +
Sbjct: 4 FTVEEVCLATKGTLIVSAQPKGFTGVSTDTRTV--QKGDLFIPLIGENFDGHEFIQQAIE 61
Query: 84 GKGCVGVI----GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
KG GV+ G + FV +TL +L ++A + R RF+ +V +TG
Sbjct: 62 -KGASGVVFSHKGMTLPQYITAIFV-------TDTLLALQDLARFHRQ-RFTIPVVAITG 112
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M A L S +V ++ N+NN +G+ L+L+ + + ++AV+EMGM GKG+
Sbjct: 113 SNGKTTTKDMAAAVL-SNQFHVLKTEANYNNEIGLPLTLLQLTQEHEVAVVEMGMRGKGQ 171
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I +LA +A P I ++ NVG++HLE LGS+E++A AK E+ + V +LN D+ V
Sbjct: 172 IRQLANIALPTIAIITNVGETHLELLGSMEEIAAAKAELLEAIPENGVSILNGDNVYVRE 231
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
R VFFG + G D+R A + + V IP+ G H NA
Sbjct: 232 KAKEAKSRIVFFGLQEG-DIR--ADNIHINAQSIDFVCRTNNNAFTVGIPTTGKHNVYNA 288
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG-IKIVNDAYNANPISTRAAID 378
AA A+ G++ + F+ MR L + + G +VNDAYNA+P+S AAID
Sbjct: 289 LAAIALGMELGMNADSISSGFRAFNASPMR--LHIEKFGDYLVVNDAYNASPMSMAAAID 346
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ ++A G++V +LGDMLELG +HE I I+++ VG+
Sbjct: 347 TMLEVA-KGRKVAVLGDMLELGPIAVSAHEAIGEKLAQCGIEIVVTVGE 394
>gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
-d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
-d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
Length = 503
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 138/434 (31%), Positives = 217/434 (50%), Gaps = 29/434 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
N +W ++ +A +++ + L P I I DTR L FFAI G FD H+F++
Sbjct: 2 NEALWDVDAMAAAMHARPLGDLPAAISGISIDTRTL--EAGDAFFAIQGDRFDGHDFLTA 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ Q G VQ + L ++ +A AR +R +V VTGS
Sbjct: 60 ATKAGAALHVVSEQKLPAL--GRVQSPLLIVDDVLKAMSRLAEAAR-ARSKATIVAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L + G V S ++NN GV LSL + R A+ E+GM+ GEI
Sbjct: 117 VGKTTTKEALRHGLAAEG-KVHASAASFNNHWGVPLSLARLPRDARFAIFEIGMNHPGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL---V 257
L ++ RP + ++ + +HL L+++A AK EIF+ +LNADDP +
Sbjct: 176 RPLVKLVRPHLAIITLIAPAHLGHFRDLDEIAEAKAEIFEGLVSDGTAILNADDPQCGPL 235
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKER--EMVKFVIPSPGLH 314
A + GV ++ FG G D RL++ G V+E E V+ + S G H
Sbjct: 236 ATMARKAGVTEIRTFGESAGADFRLLSFAPT----GEHSVMEANMGGETVRVELTSRGRH 291
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS--ELLVSRSG--IKIVNDAYNANP 370
+A N A A+L L +V +L ++ V+ R +LL +G +++++++YNANP
Sbjct: 292 MAQNVLAVLGAASLAHADLHRVAGALKDWRAVKGRGGRDLLPMPAGGHVELIDESYNANP 351
Query: 371 ISTRAAIDLL--KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
S RAA+D+L G+R+ +LGDMLELG H ++ A +DL+ L GD
Sbjct: 352 ASMRAALDVLSASRPGEGGRRIAVLGDMLELGDKAPGLHAGLVEPIEAAGVDLVFLAGDE 411
Query: 429 V-----VVQCKWRK 437
+ V++ + R+
Sbjct: 412 MKALDDVLESRVRR 425
>gi|89896439|ref|YP_519926.1| hypothetical protein DSY3693 [Desulfitobacterium hafniense Y51]
gi|89335887|dbj|BAE85482.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 468
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/402 (31%), Positives = 212/402 (52%), Gaps = 15/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ EI + GK+L P ++ TD+R + F + G+ DAH F+
Sbjct: 6 TVREIVAACGGKLLCGDPDTMVTSVVTDSRKV--TDGSLFVPLKGEKADAHTFLHAAFAS 63
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ ++ ++ V+ +T +L ++A R RFS +VG+TGS GK+
Sbjct: 64 GAAAALTQEHTRMEAEEAWIAVD-----STQLALQHIAAAYRQ-RFSIPVVGITGSAGKT 117
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M ALAL S G V ++ GN N+++G+ L + R + AV+EMG+S GE+ LA
Sbjct: 118 TTKEMTALAL-SAGYKVMKTGGNHNSQIGLPLMMFQFSREHEAAVVEMGISDFGEMARLA 176
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++A P+ V+ N+G +H+ L + E++ R K I G V LN DDP++A L
Sbjct: 177 QVAEPKYAVMTNLGITHIGQLKTQENILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT 236
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
G VF+G CD R V G L RE V+ ++P G+H ++A AA A
Sbjct: 237 GYEAVFYGTAPWCDFRAEGITV-QGETTAFRCLAPGRESVEVILPVLGMHHVLDALAALA 295
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
VA GV L + +L ++ P+ MR ++ + + +++D+YN++P + ++++ +L
Sbjct: 296 VAERLGVPLDRAAAALGDYRPLAMRQQIY-HVNEVAVIDDSYNSSPGAAKSSLSVLAGFR 354
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+RV +L DMLELG R++H ++ ++ +D++ VG
Sbjct: 355 A-GRRVAVLADMLELGEYSRQAHFEVGVCAAESGVDILLTVG 395
>gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides Rock1-4]
gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus mycoides Rock1-4]
Length = 461
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 193/368 (52%), Gaps = 21/368 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---NWDKGFVQ 105
+ DTR + + I G FD H F+ + + V N N FV+
Sbjct: 33 VSIDTRKITTG--NLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNPPVNIPVIFVE 90
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+TL +L +A R+ + ++GVTGS GK++TK ++ +L + V ++
Sbjct: 91 -------DTLEALQTLAKSYRD-QLDVKVIGVTGSNGKTSTKDIVT-SLLATKFKVQKTE 141
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ ++ ++AVLEMGMS +GEI L+++ARP ++ N+G++HL L
Sbjct: 142 GNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDL 201
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR---GVRKVFFGWRRGCDVRLV 282
GS + +A AK EI + G V V N D+PL+ N VP + FG R +
Sbjct: 202 GSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTN-RVPSMNLAAETITFGDARANNYYPT 260
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ + G ++ + E + F +P G H N A+ A+A FGV+ ++ L
Sbjct: 261 SVTLQATGTYFKM---NQDENIVFYLPVLGKHNVYNTLASMAIAKYFGVTWEEMKQGLVT 317
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
MR E++ + +G+ I+NDAYNA+P + AA L+ + K++V+LGDMLELG
Sbjct: 318 LQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQ 377
Query: 403 ERESHEKI 410
E + H ++
Sbjct: 378 EVQFHYEV 385
>gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. 3_1_44]
gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. 3_1_44]
Length = 466
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 135/395 (34%), Positives = 197/395 (49%), Gaps = 22/395 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + F A+ G FD H+FI+ + KG G I +KG VEG
Sbjct: 42 ISTDTRTI--ESGFLFVALKGDTFDGHDFINTAIE-KGATGAI-------VEKGRA-VEG 90
Query: 109 NGNVNTLNSLV---NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ N+LV N+A Y R RF +V +TGS GK+TTK M+A L NV ++
Sbjct: 91 IACIEVDNTLVAYQNLARYHRR-RFDIPVVAITGSSGKTTTKEMVAAVL-GTEFNVLKTE 148
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N+NN +G+ +L+ + + V+EMGM G G+I ELA +A P + ++ NVG SH+E L
Sbjct: 149 KNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELL 208
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
GS E +A AKGE+ + V +LN DDP V + + + +G R + + +
Sbjct: 209 GSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKGKTITYGIER--NATCIGSH 266
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
+ G++ + E+ +P G H +A AA + G+ + LS F+
Sbjct: 267 LRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTG 326
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTER 404
MR E +V I I+NDAYNANP S AI L + GKR + +LGDMLELG
Sbjct: 327 TPMRQE-IVPFEDIVILNDAYNANPSSMAEAIKALGQL--EGKRKIAMLGDMLELGDFSE 383
Query: 405 ESHEKILSYCCDACIDLIGLVGDRVVVQCKWRKWS 439
E+H +I + ++ GD K K +
Sbjct: 384 EAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKA 418
>gi|344996594|ref|YP_004798937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor lactoaceticus 6A]
gi|343964813|gb|AEM73960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor lactoaceticus 6A]
Length = 448
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 209/397 (52%), Gaps = 21/397 (5%)
Query: 29 INEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELYGKG 86
++EIA ++NG++ + ++ + I + N K+ F + G FD H+FI L G
Sbjct: 5 LSEIATAINGELRNFSGD-VLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQN-G 62
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
+ I + ++ +V+VE +TL +L ++ACY R +VGVTGSVGK++T
Sbjct: 63 AISFISQKDFDDLKVPYVKVE-----DTLLALQSLACYVRRKLNHLKVVGVTGSVGKTST 117
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K I L SL F++ GN+NN +G+ +S++ + +AV EMGMS GEI +L+++
Sbjct: 118 KEYIFNVL-SLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQI 176
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
A+P+I V+ N+G +H+E+L S ++ AK EI + ++N D+ ++ NL
Sbjct: 177 AKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDIL-NLHKKELK 235
Query: 267 RKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
RKV G + R Q G +V + I S H N+ A AV
Sbjct: 236 RKVVTIGIENESNFRAQNVQRHQNGFSFEV------GGYTYFIESFNFHDIYNSLFAIAV 289
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
T+ GV + ++ ++ R E ++ + I IV+D YNA+ S +AID + +
Sbjct: 290 GTILGVDRELIKEAIRQKERLKRRFE-VIKKGSITIVDDTYNASTHSMLSAIDSICEF-- 346
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+GK++++LGDMLELG E H+K+ Y ID++
Sbjct: 347 DGKKILVLGDMLELGEFSEEEHKKVGRYILQKPIDVV 383
>gi|403746379|ref|ZP_10954912.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
hesperidum URH17-3-68]
gi|403120710|gb|EJY55064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
hesperidum URH17-3-68]
Length = 457
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/393 (32%), Positives = 199/393 (50%), Gaps = 26/393 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D R + P F A GQ + H+F+ V ++ V + G
Sbjct: 29 IAVDHREVQPQDA--FVAFVGQRVNGHQFVEDAFSRGASVAIVTENV---------KAAG 77
Query: 109 NGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ ++L+ + A + R FSG +VG+TGS GK+TTK M+A L ++G +F +
Sbjct: 78 GSILRVQDALLAVQMMAEHERQQFSGPVVGITGSNGKTTTKEMVAAVLGAMGDCLF-TPA 136
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +G+ L+++ VLEMGM G G+I L +A+P I V+ N+G SH+E LG
Sbjct: 137 NRNNELGLPLTILQRQARHRSIVLEMGMRGFGQIRRLCEIAQPTIGVITNIGYSHIELLG 196
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
S E +ARAKGE+ + +LN DDP + + ++G+ + DVR
Sbjct: 197 SQEGIARAKGELLEALPEHGRGILNRDDPWLCRIASKSRAPITWYGFAKDADVRADGVTW 256
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
A G+ +V E F IP+ G+H NA AA AV G+SLA + L+
Sbjct: 257 AEDGMHFRVHWRNEER--SFHIPTFGVHNVANALAAIAVGLTVGLSLADMVAPLARVEAS 314
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R +L + + +++D YNA+P S +A++++L+ IA G+RV ILGDM ELG
Sbjct: 315 SGRLRILKG-TRLTVIDDCYNASPSSMQASLEVLQHIAPPGQRVAILGDMYELGDHAESG 373
Query: 407 HEKILSYCCDACIDLIGLVG-DRVVVQCKWRKW 438
H+++ + +G +G DR++ K +W
Sbjct: 374 HKEVG--------EAVGRLGVDRLLAVGKMARW 398
>gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella parvula ATCC 17745]
gi|416999074|ref|ZP_11939743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella parvula ACS-068-V-Sch12]
gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella parvula ATCC 17745]
gi|333977227|gb|EGL78086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella parvula ACS-068-V-Sch12]
Length = 452
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 135/395 (34%), Positives = 197/395 (49%), Gaps = 22/395 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + F A+ G FD H+FI+ + KG G I +KG VEG
Sbjct: 28 VSTDTRTI--ESGFLFVALKGDTFDGHDFINAAIE-KGATGAI-------VEKG-RSVEG 76
Query: 109 NGNVNTLNSLV---NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ N+LV N+A Y R RF +V +TGS GK+TTK M+A L NV ++
Sbjct: 77 IACIEVDNTLVAYQNLARYHRR-RFDIPVVAITGSSGKTTTKEMVAAVL-GTEFNVLKTE 134
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N+NN +G+ +L+ + + V+EMGM G G+I ELA +A P + ++ NVG SH+E L
Sbjct: 135 KNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELL 194
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
GS E +A AKGE+ + V +LN DDP V + + + +G R + + +
Sbjct: 195 GSREAIAEAKGELIRCLPENSVAILNEDDPYVKAMDRLAKGKTITYGIER--NATCIGSH 252
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
+ G++ + E+ +P G H +A AA + G+ + LS FS
Sbjct: 253 LRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFSG 312
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTER 404
MR E +V I I+NDAYNANP S AI L + GKR + +LGDMLELG
Sbjct: 313 TPMRQE-IVPFEDIVILNDAYNANPSSMAEAIKALGQL--EGKRKIAMLGDMLELGDFSE 369
Query: 405 ESHEKILSYCCDACIDLIGLVGDRVVVQCKWRKWS 439
E+H +I + ++ GD K K +
Sbjct: 370 EAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKA 404
>gi|398354335|ref|YP_006399799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Sinorhizobium fredii USDA 257]
gi|390129661|gb|AFL53042.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
MurF [Sinorhizobium fredii USDA 257]
Length = 482
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 199/389 (51%), Gaps = 25/389 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGII--CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GII D+R +A K + FFAI G D H++ L
Sbjct: 4 LWTCSDLLAAMNGRPVGSLPDGIIGISIDSRTIA--KGEAFFAIRGDRVDGHDYAGLALA 61
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + V+ + L +++ + C AR+ R + ++ VTGS
Sbjct: 62 NGASLLVVSEGKLPALGRLIAPMIVVD-----DVLEAMIRLGCAARD-RSAAKVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L LG V S ++NN GV L+L + D + E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPLG-RVHASVASFNNHWGVPLTLARMPETTDFGIFEIGMNHHGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L M RP + VV ++ +HL + SL+++A AK EIF+ G V+N D P L+
Sbjct: 175 RPLTAMVRPHVAVVTSIAAAHLGNFASLDEIASAKAEIFEGVVKGGHAVINRDSPQFDLL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
GV + FG + RL+ + A G + ++ I +PG H+A
Sbjct: 235 ERAAAAAGVGHIHAFGANPKSEYRLI--EFAAGADRSVLWAGIGGRTLEVTIGAPGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA A A A L G L +V SL+ P + +R L + + +++++YNANP S
Sbjct: 293 ENALAVIAAAQLAGADLDRVVASLATMQPEKGRGLRHRLKIGAGHLTLIDESYNANPASM 352
Query: 374 RAAIDLLKDI--ACNGKRVVILGDMLELG 400
RAAI LL+D A G+R+ ILGDMLE+G
Sbjct: 353 RAAISLLRDADPAAGGRRIAILGDMLEMG 381
>gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium difficile 630]
gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Clostridium
difficile 630]
Length = 457
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 128/396 (32%), Positives = 202/396 (51%), Gaps = 37/396 (9%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILA--PNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+ + NGK++ +G +D I + N F AI G++ D H F+ Y
Sbjct: 4 LTIKELVLATNGKLI-YGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSA-YD 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNG------NVNTLN------SLVNMACYARNSRFSG 132
GC K F++ E NG ++N ++ +L +++ Y + +F
Sbjct: 62 SGC-------------KTFIKNESNGIKLESSDINLIDVKDTSLALGDISKYYK-EKFDI 107
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
+GVTGSVGK+TT+ MI A+ S +N+ ++ N NN GV L+L +++ + AV+EM
Sbjct: 108 PFIGVTGSVGKTTTRDMIYSAI-SAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEM 166
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GMSG EI L + P+I V+ N+G SH+E LGS E + +AK EI + ++N
Sbjct: 167 GMSGFNEIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNG 226
Query: 253 DDPLVANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311
DD ++ L V K+ FG+ + DV + + L V+ ++E + IP+
Sbjct: 227 DDKFLSTLKEKEHVYKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKEEI--FIPTI 284
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
G H NA +A V +SL + L NF +MR + ++ + I+ND+YNA+P
Sbjct: 285 GEHNIYNAMSAILVGLCLNISLDYIKKGLKNFKGTKMRLD-IIKNEKLTIINDSYNASPD 343
Query: 372 STRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
S AA+ +L G+RV ILGD+LE+G H
Sbjct: 344 SMDAALKILG--RYKGRRVAILGDILEMGEISEYGH 377
>gi|401564217|ref|ZP_10805129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. FOBRC6]
gi|400189067|gb|EJO23184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas sp. FOBRC6]
Length = 467
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 192/367 (52%), Gaps = 14/367 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F A+ G++FD +F + L +I + + K + +G
Sbjct: 30 ITTDTRKI--SDGDLFIALRGENFDGADFAADALNKGAAAVLIAEPISDPVQKALKKAKG 87
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+TL + +A +A +F +V +TGS GK+TTK + A L G V ++
Sbjct: 88 AVLTVADTLTAYQAIA-HAWRIKFDIPVVAITGSNGKTTTKDLTAAVLSGRGA-VCRTAA 145
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN VG+ L+L+GI AV+E+GM G G+I LA +A P + +V NV + H+E LG
Sbjct: 146 NYNNEVGLPLTLLGITAEDSAAVVEIGMRGMGQIAALAPVAAPNVGIVTNVCEVHMELLG 205
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADD--PLVANLTVPRGVRKVFFGWRRGCDVRLVAA 284
S+E++A+AK E+ + G +LNADD GVR + +G DVR A
Sbjct: 206 SIENIAKAKAELVEAIPAGGTVILNADDARVAAMRARAAEGVRVLTYGISADVDVRAEAL 265
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ A G V ER + IP G H NA AA A + G++ ++ LS+ +
Sbjct: 266 RCAADGSQFMVTWANERH--DYSIPLAGRHNVSNALAALAAGFVLGLTPQEMQTGLSHLA 323
Query: 345 PVQMRSELLVSRSGI-KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
+MR E V G + +NDAYNA+P S RAAI+ + G+++ +LGDMLELG+
Sbjct: 324 ASKMRYE--VHEVGAWRFINDAYNASPSSMRAAIETTASLYA-GRKIAVLGDMLELGAAA 380
Query: 404 RESHEKI 410
E+H I
Sbjct: 381 EEAHRDI 387
>gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens C str. JGS1495]
gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens C str. JGS1495]
Length = 453
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 214/411 (52%), Gaps = 27/411 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGA 234
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHLA 316
L P K+ G + ++ A +A L + + EKE E F + PG H
Sbjct: 235 L--PEAEYKI-VKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHNI 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
N A+A GVS ++ L N MR E L+ + G I+ND YN++P++ ++A
Sbjct: 289 SNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKSA 347
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
ID++K+I +R+ +LG M ELG E+HE+I Y + I+ + GD
Sbjct: 348 IDVMKNIEGK-RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397
>gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 457
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/368 (33%), Positives = 196/368 (53%), Gaps = 14/368 (3%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F AI G D H+FI P++ G + + + + ++ V+ + +L
Sbjct: 40 KDFLFVAIKGARVDGHDFI-PQVMENGALCALSEKDLGDVPYSYILVK-----SCEQALK 93
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
++A Y R + +VG+TGSVGK++TK MIA LE +V ++ GN+NN +G+ L++
Sbjct: 94 DLAEYYRLA-LDIKVVGITGSVGKTSTKEMIASVLEQ-KYSVLKTEGNFNNEIGLPLTIF 151
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
I ++AVLEMG++ E+ LA++ARP+I V+ N+G HLE+L + V RAK E+F
Sbjct: 152 NIREEHEVAVLEMGINEFEEMHRLAKVARPDICVITNIGFCHLENLIDRDGVLRAKTEMF 211
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLE 298
+ G +LN DD + + +G+ VFFG D A V + GL G +L
Sbjct: 212 DFMRDGAQIILNGDDDKLITVQNVKGIIPVFFGLTERHD--YYATDVHSLGLKGTSCILH 269
Query: 299 KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG 358
V I PG H+ NA A A V G++ ++ + + PV R+ L+
Sbjct: 270 LPNGTVNANIHLPGAHMVYNALAGACVGYSLGLTNEEIQKGIESLLPVSGRNN-LIETDD 328
Query: 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDAC 418
I++D YNANP+S +A++D+L + G++V ILGDM ELG E+ H + Y
Sbjct: 329 FLIIDDCYNANPVSMKASLDVLSNAL--GRKVAILGDMGELGEDEKALHYGVGVYAAKKE 386
Query: 419 IDLIGLVG 426
DLI +G
Sbjct: 387 TDLICCIG 394
>gi|303290893|ref|XP_003064733.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453759|gb|EEH51067.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 624
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 206/381 (54%), Gaps = 32/381 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHE-FISPELYG 84
++T ++IA + G +++ G + TDTR +A K WF A+ G+ DAHE F++ EL
Sbjct: 80 VFTASDIASATGGTLVRDAAAGSVTTDTRDVAGGK--WFLALVGETRDAHEEFVNDELQN 137
Query: 85 KGCVGVIGNQVC-NNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRF--SGVLVGVTGSV 141
CVGVI ++ +W KG+VQ + +L +A R+ RF V+VGVTGSV
Sbjct: 138 TECVGVISSRPPPGSWRKGYVQTA----CDPTTALQRLASDVRD-RFPPDVVVVGVTGSV 192
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TT+++ A AL SLGV V Q+ GN+NN VG+ L+L+ V VLE+GMS GEI
Sbjct: 193 GKTTTRALTARALASLGV-VHQTSGNFNNHVGLPLTLLKTPPDVRACVLELGMSALGEIS 251
Query: 202 ELARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++ARP +R+V V +HL + G + VARAK E+F + GDVCV+NADD VA +
Sbjct: 252 TLAKIARPTVRLVTRVAPAHLSGVGGDIRGVARAKAEMFDGASAGDVCVVNADDEHVAGM 311
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQV-----------------ANGGLGVQVVLEKEREM 303
T+P GVR V FG A GL + E
Sbjct: 312 TIPDGVRVVTFGAAAAAAAGGTERDGGGGGRPPDVSYDDVVSRALKGLSFTLRAAASDEK 371
Query: 304 VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK--I 361
V +P+PG H+A NA AA A A GVSL + F +V G K I
Sbjct: 372 VAVSLPAPGAHMASNAAAACACAVAAGVSLEDAAKGVEAFESDDAARLRVVETPGSKLTI 431
Query: 362 VNDAYNANPISTRAAIDLLKD 382
V+DAYNA+P S AA+ ++KD
Sbjct: 432 VDDAYNASPASVLAALRVMKD 452
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 391 VILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
V+LGDMLELG ++ HE ++ C DA D IGL G V
Sbjct: 522 VLLGDMLELGEASKQHHEDVIEACLDAGFDKIGLAGPEFV 561
>gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister invisus DSM 15470]
gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dialister invisus DSM 15470]
Length = 459
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 130/392 (33%), Positives = 205/392 (52%), Gaps = 23/392 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T+ EI ++V+G +L+ G + TDTR ++P + F A+ G FD H F++
Sbjct: 4 FTLGEILKAVSGVLLQQGSHEYCTGVNTDTRTISPG--ELFIALQGNTFDGHHFLNDACI 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
+ +I + F V +V NT +L +A + R +F +V VTG
Sbjct: 62 NGASMVIISER------SSFKAVPRTVSVILVKNTQTALEALAHFYR-MKFDIPVVAVTG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK+MIA AL + +NV + N+NN +G++L+L+ + + V+EMGM G G+
Sbjct: 115 SNGKTTTKNMIA-ALVASKLNVCATQKNFNNEIGLSLTLLSMTPETEACVVEMGMRGLGQ 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I EL R+A P I VV NVG SH+ LGS E++A+AKGE+ + + +LN DDP V
Sbjct: 174 IAELCRIAAPTIGVVTNVGTSHIGILGSQENIAKAKGELIESLPDKGIAILNEDDPYVIR 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ + +G V Q N + V E K + G+H NA
Sbjct: 234 MGDTFSGNIIGYGVNGNYTVHGSRIQYENN--CTKYVCTCFDEAFKVKLNMLGIHNVYNA 291
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA A A + G+ + ++ +LS F P R + +G+ +++D+YNANP+S A
Sbjct: 292 LAATATARVLGIDVNRIQKALSEFLPGAQR-QFFTEINGVTVIDDSYNANPLSMEMAFHA 350
Query: 380 LKDIACNGKR-VVILGDMLELGSTERESHEKI 410
++ + NGK ++LGDM ELG E + H ++
Sbjct: 351 MRQV--NGKHYFLVLGDMGELGEKEEQFHYEL 380
>gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus warneri L37603]
gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus warneri L37603]
Length = 453
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 195/379 (51%), Gaps = 26/379 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R A K+ F G++ D H F+ L V D +EG
Sbjct: 29 VTIDSR--AIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKDVSLPKD-----IEG 81
Query: 109 -----NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ + L L N + ++ VTGS GK+TTK MI L + NV +
Sbjct: 82 PIIWVDDTLQALQDLAKAYLKYVNPK----VIAVTGSNGKTTTKDMIECVLNT-EFNVKK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +G+ L+++ +D+ DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++
Sbjct: 137 TQGNYNNEIGMPLTILDLDKNTDISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQ 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCD-VRL 281
LGS E +A+AK EI K + + D+PL+ ++ + + + G +G V
Sbjct: 197 DLGSREGIAQAKSEITIGLKSNGTFIYDGDEPLLKPHVEQIKEAKCISIGLEQGNSLVCS 256
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
V QV G+ + ++E E+ P G+H NA A AV G+S + ++
Sbjct: 257 VNDQVETEGIAFTINHQQEYEL-----PILGIHNMKNAAIAIAVGQELGLSYKTIQHNIK 311
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
MR E + + ++NDAYNA+P S +AAID L ++ NG+++++LGD+LELG
Sbjct: 312 RVKLTGMRMERHETEQQVTVINDAYNASPTSMKAAIDTLSNM--NGRKIIVLGDVLELGD 369
Query: 402 TERESHEKILSYCCDACID 420
+ HE++ +Y + ID
Sbjct: 370 NSQRMHEEVGTYLQNKHID 388
>gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas flueggei ATCC 43531]
gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas flueggei ATCC 43531]
Length = 468
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 135/398 (33%), Positives = 207/398 (52%), Gaps = 30/398 (7%)
Query: 28 TINEIAESVNGKILKWGPPG----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T +EI + + + + G G I TDTR + F A+ G++FD F + E
Sbjct: 6 TWDEICAATDASVRRGGVAGDTVLPITTDTRKV--EAGDLFVALRGENFDGTAF-AAEAL 62
Query: 84 GKGCVGVIGNQ--------VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLV 135
+G V+ +Q N G + E +TL + ++A +A +F+ +V
Sbjct: 63 ERGAAAVLVDQKTPASVLAALNAAHGGVLVAE-----DTLRAYQDIA-HAWRMKFNIPVV 116
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
+TGS GK+TTK + A L G V ++ N+NN VG+ L+L+ I AV+E+GM
Sbjct: 117 AITGSNGKTTTKDLTAAVLSGRG-KVCRTAANYNNEVGLPLTLLSITPEDTAAVVEIGMR 175
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
G G+I LA +A P I +V NV + H+E LGS+E++A+AK E+ G +LNADDP
Sbjct: 176 GMGQIAALAPIAEPSIGIVTNVCEVHMELLGSIENIAKAKAELVTAIPAGGTVILNADDP 235
Query: 256 LVANL--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGL 313
VA + + GVR + +G DVR A Q G V ER ++ I PG
Sbjct: 236 RVAGMRSSAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWGGERH--EYAISLPGR 293
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI-KIVNDAYNANPIS 372
H NA AA A + G++ ++ L++ + +MR E V + G ++NDAYNA+P S
Sbjct: 294 HNVSNALAALAAGFVLGMTPQEMQEGLTHLTAEKMRYE--VHQVGAWTLINDAYNASPSS 351
Query: 373 TRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
RA+++ + G+RV +LGDMLELG+ +H +
Sbjct: 352 MRASLETTAAL-YPGRRVAVLGDMLELGTAAEAAHRDV 388
>gi|402833336|ref|ZP_10881955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. CM52]
gi|402280647|gb|EJU29348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase [Selenomonas sp. CM52]
Length = 966
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 23/372 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR +A F A+ G+ FD +F + + KG GV+ V ++ + ++
Sbjct: 526 IVTDTRKIAAG--SLFVALRGERFDGADF-AAQAVEKGAAGVL---VASDTPEA--KLPK 577
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G V +TL + +A R +FS +V +TGS GK+TTK + A L + + V ++
Sbjct: 578 TGVVLKAKDTLLAYQQIAAAWRR-KFSIPVVAITGSNGKTTTKDLTAAVLGAR-LLVQKT 635
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +G+ L+L+G+ A + AV+E+GM G G+I LA +A P + +V NVG+ H+E
Sbjct: 636 AANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAPTVAIVTNVGEVHMEL 695
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDP--LVANLTVPRGVRKVFFGWRRGCDVRLV 282
LGS+E++ARAK E+ + + G +LNADD LV GVR V FG R DVR V
Sbjct: 696 LGSIENIARAKAELVEAVEPGGTVILNADDARVLVMREKAKAGVRVVTFGLSRSADVRAV 755
Query: 283 AAQVANGGLGVQVVLEKER---EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGIS 339
A A GG+ + + ER E + +P PG H NA AA A A + G+SL V
Sbjct: 756 AVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAAIAAARVLGLSLVDVRRG 815
Query: 340 LSNFSPVQMRSELLVSRSG-IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLE 398
L+ +MR V + G VNDAYNA+P STRA++ L ++ G+++ +LGDMLE
Sbjct: 816 LAVPPAQKMR--FAVEKCGAYTFVNDAYNASPASTRASLKTLAEMFA-GRKIAVLGDMLE 872
Query: 399 LGSTERESHEKI 410
LGS + H +
Sbjct: 873 LGSASKSGHASV 884
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 44/259 (16%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ T+ E+A V G +K I D+R + + F AI G H D H FI+ +
Sbjct: 1 MKTLAELAALVEGAEIKGDAAAKIADIVHDSREV--TEGTLFVAIEGLHVDGHSFIA-QA 57
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSL-----VNMACYARNSRFSGVLVGV 137
KG ++ ++G EG V + +L V + + ++G+
Sbjct: 58 VEKGACAIL-------TERGIEIPEGAAAVLRVPNLAAALEVIVPFFHDYPSRKMRIIGI 110
Query: 138 TGSVGKSTTKSMIALALESLGVN--------------VFQSYGNWNNRVGVALSLIGI-D 182
TG+ GK+TT M L G V + + V + +L +
Sbjct: 111 TGTNGKTTTSYMTRAILREAGYKVGLIGTIQILVEDEVLPIHNTTPDVVVLERTLAYMAR 170
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIR--VVLNVGDSHLESLGSLEDVARAKGEIF- 239
R +D V+E+ L+ R+A E V N+ HL+ +LE+ RAK +F
Sbjct: 171 RGMDFVVMEVS----SHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFD 226
Query: 240 ----QESKLGDVCVLNADD 254
+ +K G ++N DD
Sbjct: 227 LVSRKGAKAGKTAIVNIDD 245
>gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium 8_1_57FAA]
gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438459|ref|ZP_08618093.1| hypothetical protein HMPREF0990_00487 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium 8_1_57FAA]
gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336019254|gb|EGN48984.1| hypothetical protein HMPREF0990_00487 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 473
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 195/368 (52%), Gaps = 14/368 (3%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F AI G D H FI P++ +G + + + + +++V + +L
Sbjct: 40 KDSLFIAIRGARVDGHSFI-PKVMEQGALCAVSEEDLGDVPYSYIKV-----ASCEQALK 93
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
++A + R S +VG++GSVGK++TK MIA L S +V ++ GN+NN +G+ L++
Sbjct: 94 DIAEHYRRS-LDIKVVGISGSVGKTSTKEMIASVL-SQKYSVLKTEGNFNNEIGLPLTVF 151
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+ + +IAVLEMG+SG E+ LA++ARP+I V+ N+G +H+E+LGS + + +AK E+F
Sbjct: 152 NLRKEHEIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGILKAKTEMF 211
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLE 298
+LN DD + + G+ V+FG C A ++ GL G
Sbjct: 212 AYMNENGTIILNGDDDKLRGYSPENGITPVYFGLDESCGFH--AENISGKGLNGTDAQFF 269
Query: 299 KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG 358
I PG H+ NA AA AV G++ ++ + P+ R+ L+
Sbjct: 270 TPNSSFTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAGRNN-LIRAPH 328
Query: 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDAC 418
I++D YNANP S +A++D+L + ++ ILGDM ELG E++ H ++ +
Sbjct: 329 FTIIDDCYNANPTSMKASLDVLA--FADTRKAAILGDMFELGENEKQMHREVGIHAVRKG 386
Query: 419 IDLIGLVG 426
ID++ +G
Sbjct: 387 IDVLICIG 394
>gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
gi|145846281|gb|EDK23199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus torques ATCC 27756]
Length = 483
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 199/379 (52%), Gaps = 16/379 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R K+ F AI G D H FI P++ +G + + + + +++V
Sbjct: 41 VVIDSR--KAEKDSLFIAIRGARVDGHSFI-PKVMEQGALCAVSEEDLGDVPYSYIKV-- 95
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +L ++A + R S +VG++GSVGK++TK MIA L S +V ++ GN+
Sbjct: 96 ---ASCEQALKDIAEHYRRS-LDIKVVGISGSVGKTSTKEMIASVL-SQKYSVLKTEGNF 150
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L++ + + +IAVLEMG+SG E+ LA++ARP+I V+ N+G +H+E+LGS
Sbjct: 151 NNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSR 210
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ + +AK E+F +LN DD + + G+ V+FG C A ++
Sbjct: 211 DGILKAKTEMFAYMNENGTIILNGDDDKLRGYSPENGITPVYFGLDESCGFH--AENISG 268
Query: 289 GGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
GL G I PG H+ NA AA AV G++ ++ + P+
Sbjct: 269 KGLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIA 328
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R+ L+ I++D YNANP S +A++D+L + ++ ILGDM ELG E++ H
Sbjct: 329 GRNN-LIRAPHFTIIDDCYNANPTSMKASLDVLA--FADTRKAAILGDMFELGENEKQMH 385
Query: 408 EKILSYCCDACIDLIGLVG 426
++ + ID++ +G
Sbjct: 386 REVGIHAVRKGIDVLICIG 404
>gi|218532976|ref|YP_002423792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylobacterium extorquens CM4]
gi|218525279|gb|ACK85864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylobacterium extorquens CM4]
Length = 487
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 204/430 (47%), Gaps = 44/430 (10%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFI 78
S++P+WT + + G+++ G P + DTR L P FFAI G+ D H+F+
Sbjct: 2 SDAPLWTPAALEAATGGRLI--GAPRAVTGASIDTRSLEPG--DLFFAIRGEARDGHDFV 57
Query: 79 SPELYGKGCVGVIGNQVCNNWDK--GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
L V+ ++ + V G G+ L+++ + AR +R +V
Sbjct: 58 RAALDKGAGAAVVAEARAKEFEGVGSVLAVPGEGDDPVLDAMRRLGLAAR-ARTEAAIVA 116
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+ TK + L + G S ++NN GV L+L + A V E+GM+
Sbjct: 117 VTGSVGKTGTKEALRHVLSAQGAT-HASVASYNNHWGVPLTLTRMPEATRFGVFEIGMNH 175
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP- 255
EIL L M RP++ ++ V H+E SL +A AKGEIF K G V V+N D+P
Sbjct: 176 GAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPN 235
Query: 256 ---LVANLTVPRGVRKVFFGWRRGCDVR-----------LVAAQVANGGLGVQVVLEKER 301
L+A+ R R + FG DVR +V A V +GV V
Sbjct: 236 YERLLAHAQASRAGRVITFGEHAAADVRAHRILTRPDVSVVDATV----MGVPVT----- 286
Query: 302 EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG--- 358
+ + +PG H+A+N+ A G LA+ +SL++ P R E R G
Sbjct: 287 ----YQLGTPGRHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGE 342
Query: 359 IKIVNDAYNANPISTRAAIDLLK--DIACNGKRVVILGDMLELGSTERESHEKILSYCCD 416
+V+++YNANP S RAA+ L D G+R+ +LGDM ELG+ H ++
Sbjct: 343 AFLVDESYNANPASIRAALATLAGIDTGVKGRRIAVLGDMKELGAAGEALHRELADAVAA 402
Query: 417 ACIDLIGLVG 426
IDL+ VG
Sbjct: 403 NGIDLVFAVG 412
>gi|386831665|ref|YP_006238319.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus HO 5096 0412]
gi|417799435|ref|ZP_12446575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21310]
gi|418655917|ref|ZP_13217749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-105]
gi|334273766|gb|EGL92105.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21310]
gi|375035303|gb|EHS28433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-105]
gi|385197057|emb|CCG16702.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus HO 5096 0412]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/384 (33%), Positives = 202/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ V+ + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENVKCISIGV--AADNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHISVGNYLEEKHIDVLYTFGNE 395
>gi|384458854|ref|YP_005671274.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum EA 2018]
gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum EA 2018]
Length = 455
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 218/410 (53%), Gaps = 29/410 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T NEIA++VNGK++ G + + DTR L+ K F AI G++F+ ++FI +
Sbjct: 4 LTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLS--KGAIFIAINGENFNGNKFIHNAVQ 61
Query: 84 GKGCVGVIGNQVCNNWDK-----GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG I +++ D + VE +T +L+++A + R S + +V +T
Sbjct: 62 -KGAALCIVDEIHFEKDSFKEDISILLVE-----DTKKALLDLAEFYR-STLNIKVVAIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK + A L S VF++ GN+NN +G+ L + +D++ ++AVLEMGM+
Sbjct: 115 GSTGKTSTKDITASVLRS-KFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFN 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A+ ARP+I ++ N+G SH+E+L S E++ +AK EI ++ ++N D+ L+
Sbjct: 174 EIHNMAKAARPDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLLK 233
Query: 259 NLTVPR-GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
V K + + N VQ K V+ PG H
Sbjct: 234 KHEFKSINVLKTSLNKEGNLNAENLCLHEGNSEFEVQ--------GEKLVLNMPGKHNIE 285
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
NA + A A G++ ++ L + MR + +V+ I IV+D+YNA+P S AAI
Sbjct: 286 NAMLSIAAALKLGLTFEEIRKGLKDLELTAMRLD-IVNGENIVIVDDSYNASPDSMIAAI 344
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
D+ K++ N +R+ +LG M ELG ESH+++ +Y + ID + +VG+
Sbjct: 345 DVTKNLKGN-RRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGE 393
>gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum ATCC 824]
gi|337737345|ref|YP_004636792.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum DSM 1731]
gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum ATCC 824]
gi|336293011|gb|AEI34145.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
acetobutylicum DSM 1731]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 218/410 (53%), Gaps = 29/410 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T NEIA++VNGK++ G + + DTR L+ K F AI G++F+ ++FI +
Sbjct: 1 MTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLS--KGAIFIAINGENFNGNKFIHNAVQ 58
Query: 84 GKGCVGVIGNQVCNNWDK-----GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG I +++ D + VE +T +L+++A + R S + +V +T
Sbjct: 59 -KGAALCIVDEIHFEKDSFKEDISILLVE-----DTKKALLDLAEFYR-STLNIKVVAIT 111
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK + A L S VF++ GN+NN +G+ L + +D++ ++AVLEMGM+
Sbjct: 112 GSTGKTSTKDITASVLRS-KFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFN 170
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A+ ARP+I ++ N+G SH+E+L S E++ +AK EI ++ ++N D+ L+
Sbjct: 171 EIHNMAKAARPDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLLK 230
Query: 259 NLTVPR-GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
V K + + N VQ K V+ PG H
Sbjct: 231 KHEFKSINVLKTSLNKEGNLNAENLCLHEGNSEFEVQ--------GEKLVLNMPGKHNIE 282
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
NA + A A G++ ++ L + MR + +V+ I IV+D+YNA+P S AAI
Sbjct: 283 NAMLSIAAALKLGLTFEEIRKGLKDLELTAMRLD-IVNGENIVIVDDSYNASPDSMIAAI 341
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
D+ K++ N +R+ +LG M ELG ESH+++ +Y + ID + +VG+
Sbjct: 342 DVTKNLKGN-RRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGE 390
>gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens D str. JGS1721]
gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens D str. JGS1721]
Length = 453
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 214/411 (52%), Gaps = 27/411 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIAAFFDKNNTLVVCGNDDFLGA 234
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHLA 316
L P K+ G + ++ A +A L + + EKE E F + PG H
Sbjct: 235 L--PSAEYKI-VKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHNI 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
N A+A GVS ++ L N MR E L+ + G I+ND YN++P++ ++A
Sbjct: 289 SNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKSA 347
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
ID++K+I +R+ +LG M ELG E+HE+I Y + I+ + GD
Sbjct: 348 IDVMKNIEGK-RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397
>gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile QCD-63q42]
gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
[Clostridium difficile ATCC 43255]
Length = 457
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 200/388 (51%), Gaps = 21/388 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILA--PNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+ + NGK++ +G +D I + N F AI G++ D H F+ Y
Sbjct: 4 LTIKELVLATNGKLI-YGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSA-YD 61
Query: 85 KGCVGVIGNQV----CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
GC I N+ + D ++V+ +T +L +++ Y + +F +GVTGS
Sbjct: 62 SGCKTFIKNESNGIKLESSDINLIEVK-----DTSLALGDISKYYK-EKFDIPFIGVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ MI A+ S +N+ ++ N NN GV L+L +++ + AV+EMGMSG EI
Sbjct: 116 VGKTTTRDMIYSAI-SAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + P+I V+ N+G SH+E LGS E + +AK EI + ++N DD ++ L
Sbjct: 175 KYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTL 234
Query: 261 TVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
K+ FG+ + DV + + L V+ ++E + IP+ G H NA
Sbjct: 235 KEKEHAYKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKEEI--FIPTIGEHNIYNA 292
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
+A V +SL + L NF +MR + ++ + I+ND+YNA+P S AA+ +
Sbjct: 293 MSAILVGLCLNISLDYIKKGLKNFKGTKMRLD-IIKNEKLTIINDSYNASPDSMDAALKI 351
Query: 380 LKDIACNGKRVVILGDMLELGSTERESH 407
L G+RV ILGD+LE+G H
Sbjct: 352 LG--RYKGRRVAILGDILEMGEISEYGH 377
>gi|418560718|ref|ZP_13125227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21252]
gi|371971140|gb|EHO88547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21252]
Length = 452
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 201/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R ++ KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSRSIS--KNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTSIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVNEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ + G+
Sbjct: 372 EMHISVGNYLEEKHIDVLYMFGNE 395
>gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens NCTC 8239]
gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens NCTC 8239]
Length = 453
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 218/412 (52%), Gaps = 29/412 (7%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++ + +
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYV-LDAF 60
Query: 84 GKGC-VGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG + ++ C+ D ++V+ NT +L+++A + R + +VG+T
Sbjct: 61 NKGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G
Sbjct: 115 GSAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLG 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA +A P++ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 174 QIRELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLG 233
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHL 315
L P K+ G + + A +A L + + EKE E F + PG H
Sbjct: 234 AL--PEAEYKI-VKTGVGENFEIGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHN 287
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
N A+A GVS ++ L+N MR E L+ + G I+ND YN++P++ ++
Sbjct: 288 ISNLMLGIAIAKELGVSFEEMKRGLNNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKS 346
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AID++K+I +R+ +LG M ELG E+HE+I Y + I+ + GD
Sbjct: 347 AIDVIKNIEGK-RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397
>gi|403378626|ref|ZP_10920683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Paenibacillus sp. JC66]
Length = 475
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/368 (33%), Positives = 192/368 (52%), Gaps = 21/368 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P F I G D H F+ L KG V+ W+K
Sbjct: 30 VSIDTRTLEPGN--LFVPIVGDRMDGHRFVQQAL-DKGAAAVL-------WEKSKPVPPA 79
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G V ++L +L +A R S ++G+TGS GK++TK ++A AL S ++
Sbjct: 80 YGPVLLVDDSLLALQRLAKVYR-SELPVRVIGITGSNGKTSTKDILA-ALLSTTFKTQKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
+GN NN +GV L+L+ ++ ++AV+EMGMS GEI L+ +A+P+ ++ N + HL
Sbjct: 138 FGNLNNHLGVPLTLLALEEDTEMAVVEMGMSALGEIQLLSSIAKPDAAIITNASEVHLAD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDP-LVANLTVPRG-VRKVFFGWRRGCDVRLV 282
L S E + +AK EI K V V N D+P L L+ +G ++ FG DV V
Sbjct: 198 LKSREYIVQAKLEIVCGLKEDGVLVYNGDNPRLTQPLSRLKGSYERLSFGDHPANDVYPV 257
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ + G+ + +RE + IP G H INA AA +VA FG+S A++ L
Sbjct: 258 HYTMDDTGVEFTI---SDRECPRLRIPLLGKHQMINALAALSVARYFGISFARITKGLLQ 314
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
MR+E + GI ++NDAY +NP S +AA+D L ++ + +++ +LGDM+ELG
Sbjct: 315 IEATGMRNEKIEIADGITVINDAYKSNPSSLQAALDTLYEMEESRQKIAVLGDMVELGEE 374
Query: 403 ERESHEKI 410
+ H+ I
Sbjct: 375 SEKLHKSI 382
>gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens E str. JGS1987]
gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens E str. JGS1987]
Length = 453
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 214/411 (52%), Gaps = 27/411 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGA 234
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHLA 316
L P K+ G + ++ A +A L + + EKE E F + PG H
Sbjct: 235 L--PSAEYKI-VKTGVGENFKVGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHNI 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
N A+A GVS ++ L N MR E L+ + G I+ND YN++P++ ++A
Sbjct: 289 SNLILGIAIAKELGVSFEEMKRGLKNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKSA 347
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
ID++K+I +R+ +LG M ELG E+HE+I Y + I+ + GD
Sbjct: 348 IDVMKNIEGK-RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397
>gi|429759640|ref|ZP_19292138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica KON]
gi|429179601|gb|EKY20848.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica KON]
Length = 472
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/402 (33%), Positives = 206/402 (51%), Gaps = 38/402 (9%)
Query: 22 SNSPIWTINEIAESVNGKI-----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHE 76
SN +T+ EI ++ +G L++ I TDTR + F A+ G FD H+
Sbjct: 19 SNMAEFTLQEIIDATSGTCKGDVSLQFKD---ISTDTRTIEAG--YVFVALRGDTFDGHD 73
Query: 77 FISPELYGKGCVGVIGNQ-------VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR 129
FI+ + KG I + +C V+VE NTL + ++A + R R
Sbjct: 74 FINTAIE-KGATAAIVEKGRSVDGIIC-------VEVE-----NTLKAYQDLANFHRR-R 119
Query: 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAV 189
F +V +TGS GK+TTK M+A L S NV ++ N+NN +G+ +L+ + + V
Sbjct: 120 FQIPVVAITGSSGKTTTKEMVAAVL-STEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACV 178
Query: 190 LEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCV 249
+EMGM G G+I ELA +A P I ++ NVG SH+E LGS E +A AKGE+ + V +
Sbjct: 179 VEMGMRGLGQIEELALIAEPTIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAI 238
Query: 250 LNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIP 309
LN DD V ++ + V +G V + + + G++ + E+ +P
Sbjct: 239 LNEDDYFVKAMSSIAKGKTVTYGIHSNATV--IGSHLHYKKDGIKFTCKCYDEVFDVFLP 296
Query: 310 SPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369
G H +A AA A + GV +++ LS+F+ MR E +V+ I I+NDAYNAN
Sbjct: 297 MIGEHNVYDALAAIAAGRVLGVKSSKIKKGLSDFTGTPMRQE-IVAFEDIVILNDAYNAN 355
Query: 370 PISTRAAIDLLKDIACNGKR-VVILGDMLELGSTERESHEKI 410
P S +I L + GKR + +LGDMLELG E H ++
Sbjct: 356 PSSMSESIKALGQL--EGKRKIAMLGDMLELGDFTEEGHRQV 395
>gi|417959878|ref|ZP_12602597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-1]
gi|380332409|gb|EIA23224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Arthromitus sp. SFB-1]
Length = 450
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 195/375 (52%), Gaps = 30/375 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG--KGCV---GVIGNQVCNNWDKGF 103
I DTR + N F AI G++FD +++I + K C+ ++ + +D
Sbjct: 24 ISIDTRTI--NDQDIFLAIRGENFDGNKYIFDAIKKGVKLCIIDRNYFVDKEFDPYDVSI 81
Query: 104 VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
+ V+ NTL +L N+A Y R S+ L+ VTGSVGK+TTK +I L S V++
Sbjct: 82 ILVD-----NTLEALNNLAIYVR-SKLDIDLIAVTGSVGKTTTKDLIYDFLSS-NYKVYK 134
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
S+GN NN +G+ +SL+ ID +I V E+GM+ GEI L + RP I V+ N+G SH+E
Sbjct: 135 SFGNLNNHLGMPMSLVNIDDDAEIGVFEVGMNKMGEIDHLVSILRPHIGVITNIGVSHIE 194
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV-----ANLTVPRGVRKVFFGWRRGCD 278
L + E++ +AK EI D+ ++N +D L+ ++ V R G+ CD
Sbjct: 195 FLKTKENIFKAKMEIVNYFDQDDILIVNNEDDLLKTVQSSDFIVSR------IGFSEECD 248
Query: 279 VRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGI 338
+ +++ + V+ + E V +P G H +N+ A + +F + + V
Sbjct: 249 MYASNEEISLNKIKFDVLYNGKNETV--ALPINGKHNVLNSLIAFKLCEIFNIPMDVVRN 306
Query: 339 SLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLE 398
+ +P MR E ++ I I+ND YNA+P S ++A+D+L ++V ILGDM E
Sbjct: 307 KFDSLTPASMRQE-IIKYKDITIINDCYNASPTSIKSALDILS--LYQNEKVCILGDMAE 363
Query: 399 LGSTERESHEKILSY 413
+G + + +I Y
Sbjct: 364 IGEFADKYYREISEY 378
>gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Ethanoligenens harbinense YUAN-3]
gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Ethanoligenens harbinense YUAN-3]
Length = 456
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 190/380 (50%), Gaps = 17/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P F A+ G FD + ++ + KG + + C W V
Sbjct: 29 VSTDTRTIRPGS--LFIALRGARFDGNAYLKTA-FEKGASIALAERPCPGWPVVLV---- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ + A RFS +VGVTGSVGK++TK MI ++ S ++ GN
Sbjct: 82 ----DDAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEMI-FSVLSQAFRTLKNEGNL 136
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ +S+ G++R + AV EMGMS GEI L+++A P+I V+ N+G SH+E LGS
Sbjct: 137 NNLIGMPMSVFGLERQHEAAVFEMGMSAFGEISALSQVAAPDIGVITNIGVSHIEMLGSQ 196
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++ +AK EI + G +LN DDPL+A + + + GC A +V +
Sbjct: 197 ENILKAKLEILDGMRPGGKLILNGDDPLLAGVQTDKAEVITYGIENTGC--AYTAEEVES 254
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G G L + + G H NA AA AV + G+ + ++P
Sbjct: 255 GAEGTAFCLRYPGGSIAARLQVAGKHNVYNALAAFAVGRVLGMEPDTIAAGFLQYAPTGY 314
Query: 349 RSELLVSR-SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R + + R G+ V D YNA+P S R+A D+L+ + G+R+ +L DMLELG T ++H
Sbjct: 315 RQK--IERVGGVTFVEDCYNASPDSMRSAFDVLRTVQKTGRRLAVLADMLELGDTAPDAH 372
Query: 408 EKILSYCCDACIDLIGLVGD 427
+ + +D++ G+
Sbjct: 373 RAVGREAAENGVDVLFSYGE 392
>gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Chloroherpeton thalassium ATCC 35110]
gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Chloroherpeton thalassium ATCC 35110]
Length = 473
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/393 (32%), Positives = 196/393 (49%), Gaps = 33/393 (8%)
Query: 62 QWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLN----- 116
+ FFA+ G+H D H F+ + V+ + W + Q + N + T N
Sbjct: 42 EIFFALKGEHTDGHAFVQTAFENGAALAVVSTE----WFENTRQAQPNAHFFTENLFLSV 97
Query: 117 --SLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
LV + A R F +V + GS GK+TTK M A L + V + GN+NN +
Sbjct: 98 QDPLVALQKLANRYRKKFPIPIVTIAGSNGKTTTKEMTAAVLGTT-FRVVATEGNFNNHI 156
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
GV L+L + +IAV+EMG++ GE+ EL ++A P ++ N+G H E LG+ E++A
Sbjct: 157 GVPLTLFRLRDDTEIAVVEMGINHHGEMNELCQIAEPTHGLITNIGHEHCEFLGTPEEIA 216
Query: 233 RAKGEIFQE-SKLGDVCVLNADDPLVA------NLTVPRGVRKVFFG---WRRGCDVRLV 282
A+GE+++ S+ G +NADD L + NL G+ + G W + +
Sbjct: 217 MAEGELYRYLSRTGGSGFVNADDGLASQTAGELNLQTLYGIEQPNLGLNIWAKEVQLN-- 274
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
G ++ K+ + I G H NA AAAA+ FG L V ++L +
Sbjct: 275 ----QQGCASFKICTPKQALTLNLQI--SGRHNVYNALAAAAIGLNFGAKLESVKLALEH 328
Query: 343 FSPVQMRSEL-LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
F P + + +G+ I+ND+YNANP S R+A+ L + C+GK++V+LGDMLELGS
Sbjct: 329 FVPKSGSKRMERICAAGLTILNDSYNANPESMRSALGTLASLICDGKKIVLLGDMLELGS 388
Query: 402 TERESHEKILSYCCDACIDLIGLVGDRVVVQCK 434
H K+ + A IDL G+ + C+
Sbjct: 389 VSETEHRKLGEFIEAAGIDLFFGFGNAMKWTCQ 421
>gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9719]
gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9719]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 200/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQGGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|42781309|ref|NP_978556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
[Bacillus cereus ATCC 10987]
gi|42737231|gb|AAS41164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
[Bacillus cereus ATCC 10987]
Length = 451
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/358 (31%), Positives = 190/358 (53%), Gaps = 18/358 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D HE++ E G V + + KG FV +TL +L +A + R
Sbjct: 48 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGIPIIFVD-------DTLFALQQLAQFYR-R 98
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ + R +
Sbjct: 99 ELNVKVIGITGSNGKTTVKDIIGGILSST-YRVHKTKGNFNSQIGLPLTILEMKRDTEFL 157
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+R+A+P++ ++ +G SHLE+LGS E++A+AK EI +
Sbjct: 158 ILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIIDGLNDDGLF 217
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+PL++ G+ FG + D L V GV L + +++ +
Sbjct: 218 LYNGDEPLLSQNINMLGIESKSFGGKYTND--LFPTNVQLDEYGVHFKLNNTK--IQYDV 273
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H +NA AV + V + ++ +L + QMR + L +++G I+NDA+NA
Sbjct: 274 PLHGKHNILNAIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNA 333
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+P S +AAI+ L+ + K+++++GDMLELG + H +I + I + G
Sbjct: 334 SPSSMKAAIETLQKLNAYEKKIIVIGDMLELGKEAKTYHREIGKMLNEESIQYVFTYG 391
>gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfuromonas acetoxidans DSM 684]
gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfuromonas acetoxidans DSM 684]
Length = 456
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/386 (34%), Positives = 202/386 (52%), Gaps = 16/386 (4%)
Query: 28 TINEIAESVNGKILKWGP-PGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T +++A V G+ L P I + TD+R L F + G ++D H+++ +
Sbjct: 4 TSDQVATIVGGRRLAAATDPEINGLSTDSRTL--QSGDLFVPLKGPNYDGHDYLRQAVE- 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
G + +V +QVE +TL +L +A R S F G ++ VTG+ GK+
Sbjct: 61 HGAAACLSEEVVGGLPVPVIQVE-----DTLQALGELARTIR-SGFDGPVLAVTGTTGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+TK M+A L + G + ++ GN+NN +G+ L+L + VLE+GMS GEI L
Sbjct: 115 STKEMLASIL-AQGSDGLKTEGNFNNLIGLPLTLARLSDEHRWMVLELGMSQHGEIERLT 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A+P++ ++ NVG HL +G++E VARAKGE+F K G V+N DD L+A L +P
Sbjct: 174 EIAQPDVALITNVGAGHLAGVGNIEGVARAKGELFSGLKAGATAVVNRDDALIAALPIPD 233
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
GVR + F VR A + G L V+ +P PG H NA AAAA
Sbjct: 234 GVRVIDFSLTYQTQVR---ATSIDSGQQASFTLHVGESQVRVELPLPGRHQVYNALAAAA 290
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
A G SL Q+ L R E+ G +++D+YNANP S +AA+ +L D
Sbjct: 291 AAHAVGCSLEQIATGLGCVKMAAGRLEVRTLPHGATVLDDSYNANPQSMQAALSVLSDWP 350
Query: 385 CNGKRVVILGDMLELGSTERESHEKI 410
C G ++ +LGDMLELG + HE++
Sbjct: 351 CQGTKIAVLGDMLELGDVSQACHEEL 376
>gi|345859007|ref|ZP_08811378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Desulfosporosinus sp. OT]
gi|344327880|gb|EGW39287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Desulfosporosinus sp. OT]
Length = 453
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 206/403 (51%), Gaps = 15/403 (3%)
Query: 27 WTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +I + GK+L P ++ TD+R +A F + G+ DAH F+
Sbjct: 3 MTVQKIVAACGGKLLCGNPDTLVTSVVTDSREVA--GGSLFVPLKGEKTDAHTFLHAAFA 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ ++ ++ V+ +T +L N+A R RF +VG+TGSVGK
Sbjct: 61 SGAATVLTQEHTQTEAEEAWIAVD-----STQPALQNIAAAYRQ-RFPIPVVGITGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ALAL + V ++ GN N+++G+ L + + AV+EMG+S GE+ L
Sbjct: 115 TTTKEMVALALAAR-YKVMKTRGNHNSQIGLPLMMFEFSGEHEAAVVEMGISDFGEMACL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR+A P+ V+ N+G +H+ L + E++ K I G V LN DDP++A L
Sbjct: 174 ARVAEPKYAVMTNIGITHIGQLKTQENILGEKLHITDRFTQGSVLFLNGDDPMLAGLRGK 233
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
VF+G CD R V + L RE V +P G+H ++A A
Sbjct: 234 TTYETVFYGRAPWCDFRAEGITVQKETTTFR-CLAPGRECVDVNLPVLGMHHVLDALAGL 292
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
AVA GV L + +L ++ P+ MR ++ + + +++D+YN++P + ++++ +L
Sbjct: 293 AVAERLGVPLDRAVTALGDYRPLTMRQQIY-HVNEVTVIDDSYNSSPDAAKSSLSVLAGF 351
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+RV +L DMLELG R++H ++ + +D++ VG
Sbjct: 352 R-TGRRVAVLADMLELGEYSRQAHFEVGVCAAEKGVDILLTVG 393
>gi|418935063|ref|ZP_13488880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|377769296|gb|EHT93070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC128]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 202/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R+++ KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSRVIS--KNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|402771246|ref|YP_006590783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylocystis sp. SC2]
gi|401773266|emb|CCJ06132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylocystis sp. SC2]
Length = 472
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 193/387 (49%), Gaps = 28/387 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P FFAI G+ D H+F+ + KG + ++ ++ G
Sbjct: 31 VSIDTRTLQPG--DLFFAIKGETRDGHDFVR-MAFEKGAAAAVIDEAHAP------ELSG 81
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G + + SL ++ AR R + + VTGSVGK++TK MI L L G S
Sbjct: 82 AGPLFVVRDVQRSLESLGARARE-RSAAFIAAVTGSVGKTSTKDMIRLMLSRFG-ETHAS 139
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
++NN GV L+L + V E+GM+ GEI L RP + VV + HLE
Sbjct: 140 AASYNNHWGVPLTLARMPAEARFGVFELGMNHAGEIAALVAQVRPHVAVVTRIAPVHLEY 199
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG--VRKVF-FGWRRGCDVRL 281
GS+E +A AK E+F G V ++N DD L G VF FG RL
Sbjct: 200 FGSIEKIADAKAEVFSALD-GGVAIINRDDGFYERLAAAAGPTANHVFGFGETERAHARL 258
Query: 282 VAAQVANGGLGVQV-VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
++ + A G ++ VLE+ ++F I +PG H+A+NA AA V +F V L + +
Sbjct: 259 LSYEPAGEGALIEAEVLERR---LRFRIGAPGKHIAVNALAALLVGAVFDVDLEEAAAAF 315
Query: 341 SNFSPV--QMRSELLVSRSG-IKIVNDAYNANPISTRAAIDLLKDIAC--NGKRVVILGD 395
+ F+P + R E + + G +++++YNANP S RAA+ LL A G+R+ +LGD
Sbjct: 316 AEFTPPSGRGRREKIATPDGEFTLIDESYNANPTSMRAALQLLGGAATGPGGRRIAVLGD 375
Query: 396 MLELGSTERESHEKILSYCCDACIDLI 422
MLELG E H + DA +DL+
Sbjct: 376 MLELGPQAAELHADLAQDLIDASVDLL 402
>gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
halodurans C-125]
gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
halodurans C-125]
Length = 452
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 203/388 (52%), Gaps = 31/388 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC------VGVIGNQVCNNWDKG 102
+ TDTR + + F + G+ FD H+++ L KG V + N D+
Sbjct: 26 VSTDTRTI--QEGNLFVPLIGERFDGHDYVEQAL-SKGAQASLWATSVPVPESLKNEDRL 82
Query: 103 -FVQVEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN 160
FV +TL +L MA Y R + + +V VTGS GK+T K ++ L LG +
Sbjct: 83 LFVN-------DTLFALQAMAKAYLRQTEPT--VVAVTGSNGKTTVKDLLYATLAPLG-S 132
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
++++ GN+NN +G+ L+++ + +LEMGMSG GEI L+++A P+I VV N+G+S
Sbjct: 133 IYKTQGNYNNHIGLPLTVLSMPANCQTLILEMGMSGLGEIELLSKLATPDIAVVTNIGES 192
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
HLE LGS E++A+AK EI K V L+ D+PL+++ V GV+ V F + +
Sbjct: 193 HLEQLGSRENIAKAKMEIALGLKPTGVLFLDGDEPLLSHY-VKEGVQTVGF----SSENK 247
Query: 281 LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
+V + G +++ +K + G H NA A +VA G+S QV SL
Sbjct: 248 IVIHDLEAREDGYSFTIDEHSYDIKLI----GEHNVKNAAYAVSVALHLGLSPEQVARSL 303
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
+ +MR E + + G ++NDAYNA+P S +AAI LK K+V +LGD+ ELG
Sbjct: 304 ERVAISKMRLEKIEGQKGALLLNDAYNASPTSMKAAIKTLKAYPNYEKKVAVLGDIYELG 363
Query: 401 STERESHEKILSYCCDACIDLIGLVGDR 428
E H + + + LVG++
Sbjct: 364 IDEEALHRSVADEITEPITTAV-LVGEK 390
>gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 472
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 209/420 (49%), Gaps = 22/420 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
S +WT +++ ++ GK L P I D+R +AP + FFAI G H+D H+F+
Sbjct: 2 SNLWTFHDLLHAIQGKALGEVPEDFVQGISIDSRSIAPK--EAFFAIKGDHYDGHDFVLH 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ C+ VI ++ + G + V + L++L +A AR R ++ +TGS
Sbjct: 60 AVQKSACLVVINAEMMASI--GPLSVPVFVVEDVLSALNKLASAAR-LRSQAKIIAITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+T K M+ LAL S G + S ++NN +GV L+L + + + E+GMS GEI
Sbjct: 117 VGKTTAKEMLKLALSSAG-KIHVSIASYNNHIGVPLTLAQMPADAEFGIFELGMSHLGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + RP I ++ + +HL + +E++A AK EIF+ + +LN DD L
Sbjct: 176 RFLTHLVRPHIAMITTIAPAHLGNFSGIEEIASAKSEIFEGLEKTGTVLLNRDDSFFEFL 235
Query: 261 TVPR---GVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLE-KEREMVKFVIPSPGLHL 315
G+ V+ FG D RL+ + + ++V L+ K E+V + G H+
Sbjct: 236 KEKSHLLGIYNVYTFGESIDADFRLLTLEQCSEESRMRVQLQGKSAEVVHHAV---GRHM 292
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL---VSRSGIKIVNDAYNANPIS 372
A N A + +L S+ + +S F P + R + + +++++YNANP S
Sbjct: 293 AQNILATLGIVSLLDASIEKAIQDISLFYPQKGRGKRYRCALKEGFFTLIDESYNANPTS 352
Query: 373 TRAAIDLLKDIACNGK--RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
RAAI +L I+ +GK R+ +LGDM E+G H + C I + L G V+
Sbjct: 353 MRAAISVLSQISPHGKGRRIAVLGDMSEMGERAESFHIDLAEILCSYNISHVWLSGVHVL 412
>gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium perfringens str. 13]
gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium
perfringens str. 13]
Length = 453
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 211/404 (52%), Gaps = 27/404 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ EI ++ G +LK I TDTR + + F A+ G++F+ + ++
Sbjct: 4 LNLQEIVKATKGALLKEADVKEIKAVSTDTRKI--EEGTMFIALKGENFNGNNYVLDAFN 61
Query: 84 GKGCVGVIGNQVCN----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
+ ++ C+ D ++V+ NT +L+++A + R + +VG+TG
Sbjct: 62 KGAKIAIVDEVKCDLNELKEDVALIKVQ-----NTGRALMDLAKFYR-EKLGLKVVGITG 115
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A L S VF++ GN+NN +G+ L ++ +D D+A+LEMGM G G+
Sbjct: 116 SAGKTSTKDLVAAVL-SDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQ 174
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I ELA +A P++ ++ N+G SH+E L + E++ +AK EI + V+ +D +
Sbjct: 175 IKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGA 234
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL---EKEREMVKFVIPSPGLHLA 316
L P K+ G + ++ A +A L + + EKE E F + PG H
Sbjct: 235 L--PEAEYKI-VKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE---FSLDMPGEHNI 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
N A+A GVS ++ L N MR E L+ + G I+ND YN++P++ ++A
Sbjct: 289 SNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLE-LIKKDGFSILNDCYNSSPVAVKSA 347
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
ID++K+I +R+ +LG M ELG E+HE+I Y + I+
Sbjct: 348 IDVMKNIEGK-RRIAVLGTMRELGHKSEEAHEEIGKYAKENGIE 390
>gi|418561994|ref|ZP_13126463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21262]
gi|371974832|gb|EHO92147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21262]
Length = 452
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 200/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNELVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9635]
gi|417891551|ref|ZP_12535613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21200]
gi|418307714|ref|ZP_12919397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21194]
gi|418889889|ref|ZP_13444017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1524]
gi|418994782|ref|ZP_13542415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG290]
gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9635]
gi|341851968|gb|EGS92870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21200]
gi|365244088|gb|EHM84753.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21194]
gi|377741715|gb|EHT65701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG290]
gi|377751206|gb|EHT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1524]
Length = 452
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 200/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R ++ KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSRSIS--KNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTSIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVNEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHISVGNYLEEKHIDVLYTFGNE 395
>gi|402557557|ref|YP_006598828.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus FRI-35]
gi|401798767|gb|AFQ12626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus FRI-35]
Length = 454
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 176/314 (56%), Gaps = 6/314 (1%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL +L +A + R + ++G+TGS GK+T K +I L S V ++ GN+N+++
Sbjct: 87 DTLFALQQLAQFYR-REINVKVIGITGSNGKTTVKDIIGGILSST-YRVHKTKGNFNSQI 144
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ L+++ + R + +LEMGMS KG+I L+R+A+P++ ++ +G SHLE+LGS E++A
Sbjct: 145 GLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIA 204
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
+AK EI + + N D+PL++ G+ FG + D L V G
Sbjct: 205 KAKFEIIDGLNDDGLFLYNGDEPLLSQNINMLGIESKSFGGKYTND--LFPTNVQLDEYG 262
Query: 293 VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
V L + +++ +P G H +NA AV + V + ++ +L + QMR +
Sbjct: 263 VHFKLNNTK--IQYDVPLHGKHNILNAIVGIAVGQFYKVPIEKIQEALQQINITQMRFQF 320
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
L +++G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG + H +I
Sbjct: 321 LTAKTGFTIINDAWNASPSSMKAAIETLQKLNAYEKKIIVIGDMLELGKEAKTYHREIGK 380
Query: 413 YCCDACIDLIGLVG 426
+ I + G
Sbjct: 381 MLNEESIQYVFTYG 394
>gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium prausnitzii L2-6]
Length = 457
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 193/370 (52%), Gaps = 19/370 (5%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV 104
P G++ TD+R + P F A G+ FD H+F + L +G V+ N
Sbjct: 23 PIGLVTTDSREVCPG--CIFVAFPGERFDGHDFAAKALE-EGAAYVVLNHPVEG------ 73
Query: 105 QVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
V V + +S M N R F +VGVTGSVGK+TTK M A+ G N
Sbjct: 74 -VPAERAVISPDSYHAMMVMGANYRGQFHPKVVGVTGSVGKTTTKQMTYAAIAGFG-NTI 131
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ GN NN +G+ ++ I R + AV+EMGMS GEI LA+ ARP++ ++ +G SH+
Sbjct: 132 KTEGNQNNELGLPRTMFRIGRDTEYAVVEMGMSHAGEIERLAKCARPDVGIITCIGVSHI 191
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGW-RRGCDVRL 281
+LGS E++ +AK EI G VLN DDP + +P VR V+F DV
Sbjct: 192 GNLGSQENICKAKLEICAGLAEGSPLVLNGDDPFLRKAALPTHVRPVWFSLGDENADV-- 249
Query: 282 VAAQVANGGLGVQVVL-EKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
A V G G+ L +K + IP+ G H NA AA A AT G++ V L
Sbjct: 250 CALDVRQEGDGMAFTLCDKNAGRYEVTIPAMGRHNVANALAAYAAATRLGLAPEGVIAGL 309
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
++F MR +++ + S + ++ D YNANP S +AA+ + K+ C +R +LGDMLELG
Sbjct: 310 ADFEQTGMRQKIVHAGS-MDVIEDCYNANPDSMKAALAMFKEYPCK-RRFALLGDMLELG 367
Query: 401 STERESHEKI 410
+HE++
Sbjct: 368 GMSAPAHEEL 377
>gi|379021758|ref|YP_005298420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M013]
gi|418950866|ref|ZP_13503004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-160]
gi|359831067|gb|AEV79045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M013]
gi|375375279|gb|EHS78869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-160]
Length = 452
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNELVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|384180148|ref|YP_005565910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar finitimus YBT-020]
gi|324326232|gb|ADY21492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus thuringiensis serovar finitimus YBT-020]
Length = 451
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 176/315 (55%), Gaps = 6/315 (1%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL +L +A + R + ++G+TGS GK+T K +I L S V ++ GN+N+++
Sbjct: 84 DTLFALQQLAQFYR-REINVKVIGITGSNGKTTVKDIIGSILSST-YRVHKTKGNFNSQI 141
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ L+++ ++R + +LEMGMS KG+I L+R+A+P++ V+ +G SHLE+LGS E++A
Sbjct: 142 GLPLTILEMERDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSREEIA 201
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
+AK EI + + N D+PL++ + FG + D L V G
Sbjct: 202 KAKFEIIDGLNDDGLFLYNGDEPLLSQNINMLSIESKSFGGKYTND--LFPTNVQLDEYG 259
Query: 293 VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
V L + +++ IP G H +NA AV + VS ++ +L + QMR +
Sbjct: 260 VHFKLNNTK--IQYDIPLHGKHNILNAIVGIAVGQFYKVSTEKIQEALQQINITQMRFQF 317
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
L +++G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG H +I
Sbjct: 318 LTAKTGFTIINDAWNASPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKGETYHREIGK 377
Query: 413 YCCDACIDLIGLVGD 427
+ I + G+
Sbjct: 378 MLNEKSIQYVFTYGE 392
>gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus RF122]
gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus RF122]
Length = 452
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 200/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ ++ +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNRIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLNTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|404416448|ref|ZP_10998269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus arlettae CVD059]
gi|403491183|gb|EJY96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus arlettae CVD059]
Length = 451
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 202/377 (53%), Gaps = 31/377 (8%)
Query: 60 KNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCNNWDKG-FVQVEGNGNVNTLNS 117
++ F G+H D H+F+S L G G + + G + V+ +TL +
Sbjct: 38 QDMLFVPFKGEHVDGHKFVSQALADGAGACFYQKDSDLSEVPTGPIIWVD-----DTLIA 92
Query: 118 LVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS 177
L +A A + ++ VTGS GK+TTK MI L+ V ++ GN+NN +G+ L+
Sbjct: 93 LQQLAQ-AYLKHVNPQVIAVTGSNGKTTTKDMIESVLKP-QFKVKKTLGNYNNEIGMPLT 150
Query: 178 LIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGE 237
++ +D+ +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ LGS E +A+AK E
Sbjct: 151 ILQLDQDTEISILEMGMSGFHEIELLSNIAQPDIAVITNIGESHMQDLGSREGIAQAKFE 210
Query: 238 IFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRG----CDVRLVAAQVANG 289
I + + + + D+PL VANL + V+ G + G C+V+ + +
Sbjct: 211 ITTGLQSNGLFIYDGDEPLLTPHVANL---QDVQLASIGIKDGNTYVCNVQDIETE---- 263
Query: 290 GLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G+ + E + + +P G H NA A A+ G+ + +L+ MR
Sbjct: 264 --GISFNINSEEQ---YDLPILGTHNMKNAAIAIAIGKHLGLDYDTIYRNLTQLKLTGMR 318
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E ++ G ++NDAYNA+P S +AAID L A +G++++ILGD+LELG + HE
Sbjct: 319 MEQHITEDGAIVINDAYNASPTSMKAAIDTLS--AMSGRKILILGDVLELGPNSQSMHES 376
Query: 410 ILSYCCDACIDLIGLVG 426
+ +Y D ID++ G
Sbjct: 377 VGTYLADKAIDVLYTFG 393
>gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555]
gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555]
Length = 463
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 219/411 (53%), Gaps = 25/411 (6%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ ++I +V+GK++ K+ I TD+R L K F A+ G+ F+ +E++
Sbjct: 4 MSFDDIVRAVSGKVILKGKYKGHKNISTDSRKLQ--KGDIFIALKGEKFNGNEYVES-AS 60
Query: 84 GKGCVGVIGNQVCNNWDK--GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG I ++V +K F + N NT +L+ +A + R S+ ++GVTGSV
Sbjct: 61 KKGASICIVDEVKFESEKISEFTTIIKVQNGNT--ALLELAEFYR-SKLDVKIIGVTGSV 117
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK +IA L + VF++ GN+NN++G+ L +D + ++AVLEMGM+ +GEI
Sbjct: 118 GKTTTKDIIAAVL-GVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIH 176
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA--- 258
+ + ARP+I V+ NV +H+ +LGS +++ AK EI + ++N+D+ L++
Sbjct: 177 NMVKAARPDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLE 236
Query: 259 --NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
N T+ R G DV V + +V + +F+I PG +
Sbjct: 237 EKNFTLNR------VGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNI 290
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
+N+ A + L +S ++ + N MR E ++ + I+ND YNANP S +AA
Sbjct: 291 VNSLLAISCGRLLNMSYDEIREGVKNIKLTSMRME-IIRKKEFTIINDCYNANPESMKAA 349
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
ID+LK+ N +++ +LG M ELG + H+++ Y + IDL+ +G+
Sbjct: 350 IDVLKEFKSN-RKIAVLGTMGELGEEAYKMHQEVGMYAGEKDIDLLIGIGE 399
>gi|423576090|ref|ZP_17552209.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-D12]
gi|401207086|gb|EJR13865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MSX-D12]
Length = 460
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 192/359 (53%), Gaps = 18/359 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D HE++ E G V + + KG FV +TL +L +A + R
Sbjct: 57 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGIPIIFVD-------DTLFALQQLAQFYRR- 107
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ ++R +
Sbjct: 108 EINVKVIGITGSNGKTTVKDIIGSILSST-YRVHKTKGNFNSQIGLPLTILEMERNTEFL 166
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+L+MGMS KG+I L+R+A+P++ ++ +G SHL++LGS E++A+AK EI G +
Sbjct: 167 ILQMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLKTLGSREEIAKAKFEIVDGLHDGGLF 226
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+PL++ G+ FG + D+ Q+ G+ ++ K +++ +
Sbjct: 227 LYNGDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHTK----IQYDV 282
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H N AV + V + ++ +L + QMR + L +++G I+NDA+NA
Sbjct: 283 PLHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNA 342
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+P S +AAI+ L+ + K+++++GDMLELG H +I + I + G+
Sbjct: 343 SPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKNGETYHREIGKMLNEESIQYVFTYGE 401
>gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016]
gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 474
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 219/411 (53%), Gaps = 25/411 (6%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ ++I +V+GK++ K+ I TD+R L K F A+ G+ F+ +E++
Sbjct: 15 MSFDDIVRAVSGKVILKGKYKGHKNISTDSRKLQ--KGDIFIALKGEKFNGNEYVES-AS 71
Query: 84 GKGCVGVIGNQVCNNWDK--GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG I ++V +K F + N NT +L+ +A + R S+ ++GVTGSV
Sbjct: 72 KKGASICIVDEVKFESEKISEFTTIIKVQNGNT--ALLELAEFYR-SKLDVKIIGVTGSV 128
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK +IA L + VF++ GN+NN++G+ L +D + ++AVLEMGM+ +GEI
Sbjct: 129 GKTTTKDIIAAVL-GVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIH 187
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA--- 258
+ + ARP+I V+ NV +H+ +LGS +++ AK EI + ++N+D+ L++
Sbjct: 188 NMVKAARPDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLE 247
Query: 259 --NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
N T+ R G DV V + +V + +F+I PG +
Sbjct: 248 EKNFTLNR------VGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNI 301
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
+N+ A + L +S ++ + N MR E ++ + I+ND YNANP S +AA
Sbjct: 302 VNSLLAISCGRLLNMSYDEIREGVKNIKLTSMRME-IIRKKEFTIINDCYNANPESMKAA 360
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
ID+LK+ N +++ +LG M ELG + H+++ Y + IDL+ +G+
Sbjct: 361 IDVLKEFKSN-RKIAVLGTMGELGEEAYKMHQEVGMYAGEKDIDLLIGIGE 410
>gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. oral taxon 158 str. F0412]
gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. oral taxon 158 str. F0412]
Length = 452
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/392 (33%), Positives = 196/392 (50%), Gaps = 16/392 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + F A+ G FD H+FI+ + KG G I + +G + +E
Sbjct: 28 VSTDTRTI--ESGFLFVALKGDTFDGHDFINTAIE-KGATGAIVEK--GRAVEGIICIEV 82
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + N+A Y R RF +V +TGS GK+TTK M+A L NV ++ N+
Sbjct: 83 E---NTLVAYQNLARYHRR-RFDIPVVAITGSSGKTTTKEMVAAVL-GTEFNVLKTEKNF 137
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ +L+ + + V+EMGM G G+I ELA +A P + ++ NVG SH+E LGS
Sbjct: 138 NNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSR 197
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E +A AKGE+ + V +LN DDP V + + + +G R + + + +
Sbjct: 198 EAIAEAKGELIRCLPENSVAILNEDDPYVKAMDSLAKGKTITYGIER--NATCIGSHLRY 255
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G++ + E+ +P G H +A AA + G+ + LS F+ M
Sbjct: 256 KKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPM 315
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTERESH 407
R E +V I I+NDAYNANP S AI L + GKR + +LGDMLELG ++H
Sbjct: 316 RQE-IVPFEDIVILNDAYNANPSSMAEAIKALGQL--EGKRKIAMLGDMLELGDFSEDAH 372
Query: 408 EKILSYCCDACIDLIGLVGDRVVVQCKWRKWS 439
+I + ++ GD K K +
Sbjct: 373 REIGQLLAEEGYSVVFTFGDAAAFIAKEAKKA 404
>gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
Length = 452
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 206/416 (49%), Gaps = 18/416 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+T++++ E+ G + TDTR + F A+ G FD H+FI+ +
Sbjct: 4 FTLSQVVEATQGTSAHTDNIKFLDVSTDTRTI--ESGFLFVALKGDAFDGHDFINTAIE- 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
KG G I + G V +E + NTL + N+A Y R RF +V +TGS GK+
Sbjct: 61 KGATGAIVEK--GRAVDGIVCIEVD---NTLVAYQNLARYHRR-RFDIPVVAITGSSGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M+A L + NV ++ N+NN +G+ +L+ + V+EMGM G G+I ELA
Sbjct: 115 TTKEMVAAVLGT-EFNVLKTEKNFNNEIGLPKTLLRLTADHQACVVEMGMRGLGQIEELA 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A P + ++ NVG SH+E LGS E +A+AKGE+ + V +LN DDP V +
Sbjct: 174 LIAEPTMGIITNVGTSHIELLGSREAIAQAKGELIRCLPENSVAILNEDDPYVKAMDSLA 233
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
+ + +G R + + + + G++ + E+ +P G H +A AA
Sbjct: 234 KGKTITYGIER--NATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIV 291
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
+ G+ + LS F+ MR E +V I I+NDAYNANP S AI L +
Sbjct: 292 AGRVLGIKSNTIRKGLSEFTGTPMRQE-IVPFEDIVILNDAYNANPSSMAEAIKALGQL- 349
Query: 385 CNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKWRKWS 439
GKR + +LGDMLELG ++H +I + ++ GD K K +
Sbjct: 350 -EGKRKIAMLGDMLELGDYTEQAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKA 404
>gi|417897461|ref|ZP_12541392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21235]
gi|341839559|gb|EGS81139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21235]
Length = 452
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 199/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKETQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNIS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|386729769|ref|YP_006196152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 71193]
gi|387603360|ref|YP_005734881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Staphylococcus
aureus subsp. aureus ST398]
gi|404479360|ref|YP_006710790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus 08BA02176]
gi|418310462|ref|ZP_12922002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21331]
gi|418979358|ref|ZP_13527154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus DR10]
gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Staphylococcus
aureus subsp. aureus ST398]
gi|365236649|gb|EHM77533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21331]
gi|379992789|gb|EIA14239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus DR10]
gi|384231062|gb|AFH70309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 71193]
gi|404440849|gb|AFR74042.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus 08BA02176]
Length = 451
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/384 (33%), Positives = 200/384 (52%), Gaps = 22/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + E + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNEH----YDLPILGKHNMKNATIAIAVGHELGLTYNIIYQNLKNVS 312
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 313 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 370
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 371 EMHIGVGNYLEEKHIDVLYTFGNE 394
>gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium extorquens PA1]
gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium extorquens PA1]
Length = 487
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/426 (30%), Positives = 201/426 (47%), Gaps = 36/426 (8%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFI 78
+++P+WT + + G+++ G P + DTR L P FFAI G+ D H+F+
Sbjct: 2 NDAPLWTPAALEAATGGRLI--GAPRAVTGASIDTRSLEPG--DLFFAIRGEARDGHDFV 57
Query: 79 SPELYGKGCVGVIGNQVCNNWDK--GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
L V+ ++ + V G G+ L+++ + AR +R ++
Sbjct: 58 RAALDKGAGAAVVAEVRAKEFEGVGPVLAVPGEGDDPVLDAMRRLGLAAR-ARTGAAIIA 116
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+ TK + L + G S ++NN GV L+L + V E+GM+
Sbjct: 117 VTGSVGKTGTKEALRHVLSAQGAT-HASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNH 175
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP- 255
EIL L M RP++ ++ V H+E SL +A AKGEIF K G V V+N D+P
Sbjct: 176 GAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPN 235
Query: 256 ---LVANLTVPRGVRKVFFGWRRGCDV-------RLVAAQVANGGLGVQVVLEKEREMVK 305
L+A+ R R + FG DV R + V +GV V
Sbjct: 236 YERLLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGVPVT--------- 286
Query: 306 FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG---IKIV 362
+ + +PG H+A+N+ A G LA+ +SL++ P R E R G +V
Sbjct: 287 YQLGTPGRHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLV 346
Query: 363 NDAYNANPISTRAAIDLLK--DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
+++YNANP S RAA+ L D G+R+ +LGDM ELG+ H ++ ID
Sbjct: 347 DESYNANPASIRAALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGID 406
Query: 421 LIGLVG 426
L+ VG
Sbjct: 407 LVFAVG 412
>gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Desulfotomaculum reducens MI-1]
gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfotomaculum reducens MI-1]
Length = 457
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 135/406 (33%), Positives = 215/406 (52%), Gaps = 19/406 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+TI EIA+ + G +L+ P I TD+R P + F A+ GQ D H+F +
Sbjct: 4 YTIEEIAQVIGGTLLQGDPVTKIKGIHTDSRRAKPR--ELFVALQGQQADGHDFARKAIE 61
Query: 84 GKGCVGVIGNQVCNNWDK-GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
++ ++ + V V+ NTL +L +A + R SR + +V VTGS G
Sbjct: 62 QGASALLVSREITGIAPQIPVVLVK-----NTLQALQQLASHNR-SRLNIPVVAVTGSNG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK MIA L + ++ GN+NN +G+ L+L+G+ +AV+EMGM G GEI
Sbjct: 116 KTSTKDMIAAVLNTR-FKTLKTEGNFNNELGLPLTLLGLGEEHQVAVVEMGMRGPGEIDF 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +A+P V+ N+G++HLE LGS+E++A AK E+ +LNAD P + L
Sbjct: 175 LAGLAKPTGAVITNIGEAHLERLGSVENIALAKTEVLAHIGRDGFAILNADSPYLGELA- 233
Query: 263 PRGVR-KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
R + KV+ G L A+ + G GV+ + + +P PG H +N+ A
Sbjct: 234 -RNCQGKVWLYSLEGIG-DLQASNIRPEGTGVRFNISSPGGKEEIYLPVPGSHNVMNSLA 291
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A V G+ L ++ L+ R ++L S +G I+ND YNANP ST+AA+ +LK
Sbjct: 292 AIGVGLQLGLQLEEIAQGLAQLCLTHSRLQIL-SSNGRVIINDTYNANPSSTKAALKVLK 350
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ A +++ +LG+M ELG E+ H+++ +D + VG+
Sbjct: 351 ETA-RSRKIAVLGNMYELGDLEQSGHQEVGEAAAAIPVDYLISVGN 395
>gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
aciditrophicus SB]
gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
aciditrophicus SB]
Length = 475
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 217/413 (52%), Gaps = 15/413 (3%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFI 78
+++P ++++E+ E+V G +L+ II TDTR L + + G +FD H+F+
Sbjct: 4 NSTPQFSVDELLEAVGGTLLQGSTDSIIRGVSTDTRQLVAG--NLYIPLKGANFDGHDFL 61
Query: 79 SPELYGKGCVGVIGN-QVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVL 134
+ KG GV+ + + G + +G + +TL +L ++A + R + V
Sbjct: 62 DVAVK-KGAGGVLVDVHHAFILETGSKKTDGCLKILVDDTLKALGDLARFWRRAVGRPV- 119
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+ +TGS GK+TTK M A LE +V ++ GN NN +G+ L+L+ + R D+A++E+G
Sbjct: 120 IAITGSSGKTTTKEMTAAILEQT-FSVLKTEGNLNNLIGLPLTLLRMHRGHDLALVELGT 178
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+ +GEI L +A P+I +V N+G +HLE L +LE + KG+++ + V NADD
Sbjct: 179 NARGEIKRLTEIAEPDIGLVTNIGPAHLEGLKTLEIIREEKGDLYGTMPKSGLAVFNADD 238
Query: 255 PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN-GGLGVQVVLEKEREMVKFVIPSPGL 313
+A L + + +G D + A+ +A G G L E + + G+
Sbjct: 239 EAMAPLRRSWQGKMLTYGITSRAD--MTASDIAKWGESGQSFTLNAGSESTVVHLSAFGM 296
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIST 373
H NA AAAA++ G+ + ++ L NF PV R E+ +G +V+D YNANP S
Sbjct: 297 HNIYNALAAAALSRAAGIGINEISQGLRNFHPVAARFEVHFLPNGAFLVDDTYNANPASV 356
Query: 374 RAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
R A+ ++ + N + VV+L DMLELG HE + S +D + L G
Sbjct: 357 REALKTIQTLKGNHRSVVVLADMLELGDQAERLHETVGSEAAATDVDRLFLKG 409
>gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oribacterium sp. oral taxon 078 str. F0262]
gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oribacterium sp. oral taxon 078 str. F0262]
Length = 438
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 126/383 (32%), Positives = 204/383 (53%), Gaps = 30/383 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R + F I G H D H+FI + +G V+ ++ K + +V
Sbjct: 17 IYLDSR--EDGRGGLFVPIIGAHKDGHDFIEMAVE-RGAAAVLSSRDVTELKKKYPEVRF 73
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T +L + Y + RF G ++GVTGS GK+T +SM+ALAL S VFQ+ GN
Sbjct: 74 WQVPDTRAALQEIGRYEKE-RFRGKVIGVTGSSGKTTMRSMLALALSS-ERRVFQTAGNA 131
Query: 169 NNRVGVALSLIGIDRA-VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
N+++GV ++L + R+ +IAVLE+GMS GE+ +A +AR ++ ++ N+G +H+E+L +
Sbjct: 132 NSQLGVPITLFQLARSGAEIAVLELGMSEPGEMTRIASIARVDLALITNIGTAHIENLKT 191
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E++ K I + G LN +DPL+A+LT R +
Sbjct: 192 KENILLEKLHILDGAADGAALYLNGEDPLLASLTEER---------------------IH 230
Query: 288 NGG--LGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
+ G LG +V L R + + + G H+ NA AA AV+ G+ V +L FS
Sbjct: 231 DLGISLGKRVELHFYRAEEEIPLSAAGHHMQQNAAAALAVSLDLGLQREGVLRALRGFSG 290
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
++ R E L+SRSGI I++D+YNA+P + +A++ +L +++ +L DMLELG E
Sbjct: 291 LKGRGEKLLSRSGIGILDDSYNASPDALKASLLVLSKEKGR-RKIALLSDMLELGERSEE 349
Query: 406 SHEKILSYCCDACIDLIGLVGDR 428
HE ++ ID + L G++
Sbjct: 350 LHEDCGAFLSSLPIDRVLLYGEK 372
>gi|416847140|ref|ZP_11906949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus O46]
gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus O46]
Length = 452
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNGTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|384548307|ref|YP_005737560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus ED133]
gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ED133]
Length = 452
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 198/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica ACS-134-V-Col7a]
gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica ACS-049-V-Sch6]
gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica ACS-049-V-Sch6]
gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella atypica ACS-134-V-Col7a]
Length = 452
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 203/393 (51%), Gaps = 30/393 (7%)
Query: 27 WTINEIAESVNGKI-----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ EI ++ +G L++ I TDTR + F A+ G FD H+FI+
Sbjct: 4 FTLQEIIDATSGTCKGDVSLQFKD---ISTDTRTIEAG--YVFVALRGDTFDGHDFINTA 58
Query: 82 LYGKGCVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ KG I G V G + VE NTL + ++A + R RF +V +T
Sbjct: 59 IE-KGATAAIVEKGRSV-----DGIICVEVE---NTLKAYQDLANFHRR-RFQIPVVAIT 108
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+A L S NV ++ N+NN +G+ +L+ + + V+EMGM G G
Sbjct: 109 GSSGKTTTKEMVAAVL-STEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMGMRGLG 167
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA +A P I ++ NVG SH+E LGS E +A AKGE+ + V +LN DD V
Sbjct: 168 QIEELALIAEPTIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNEDDHFVK 227
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
++ + V +G V + + + G++ + E+ +P G H +
Sbjct: 228 AMSSIAEGKTVTYGIHSNATV--IGSHLRYKKDGIKFTCKCYDEVFDVFLPMIGEHNVYD 285
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA A + GV +++ LS+F+ MR E +V+ I I+NDAYNANP S +I
Sbjct: 286 ALAAIAAGRVLGVKSSKIKKGLSDFTGTPMRQE-IVAFEDIVILNDAYNANPSSMSESIK 344
Query: 379 LLKDIACNGKR-VVILGDMLELGSTERESHEKI 410
L + GKR + +LGDMLELG E H ++
Sbjct: 345 ALGQL--EGKRKIAMLGDMLELGDFTEEGHRQV 375
>gi|385782322|ref|YP_005758493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 11819-97]
gi|418572729|ref|ZP_13136935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21333]
gi|364523311|gb|AEW66061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus 11819-97]
gi|371984073|gb|EHP01200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21333]
Length = 452
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 198/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHHFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|340356608|ref|ZP_08679250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sporosarcina newyorkensis 2681]
gi|339620535|gb|EGQ25104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sporosarcina newyorkensis 2681]
Length = 462
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 171/304 (56%), Gaps = 10/304 (3%)
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
++GVTGS GK++TK ++A L S V ++ GN+NN +G+ L+L+ ++ ++A+LEM
Sbjct: 110 TIIGVTGSNGKTSTKDLLAGVL-SPYFKVKKTEGNFNNELGLPLTLLSVEEETEVAILEM 168
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GMSG GEI L+ +A P V+ N+G++H++ LGS E +A+AK EI K + + +
Sbjct: 169 GMSGFGEISFLSTLAAPHFAVITNIGEAHMQDLGSREGIAKAKFEIIDGLKKDGLLLYDG 228
Query: 253 DDPLVANLTVPR-GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311
D+PL+ NL + VR + FG+ R L A Q+ + G + + + +F IP
Sbjct: 229 DEPLLQNLIASQPAVRSMSFGYERA---DLTAEQIESTDKGSSFAV-RGKLQGQFTIPVY 284
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
G H N AA +A G++ Q+ +L MR + + +G ++NDAYNA P
Sbjct: 285 GAHQVKNTLAAILIADELGLTDEQIKNALEQTELTDMRMQPVEGINGSLLINDAYNAAPT 344
Query: 372 STRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVV 431
S RAA +KD + + ++LGDMLELG E++ HE + + + + I L G R+
Sbjct: 345 SMRAAFRFIKDTSVRRDKWLVLGDMLELGEEEQDYHEGLANDLNELDLQGIALFGRRM-- 402
Query: 432 QCKW 435
KW
Sbjct: 403 --KW 404
>gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlorobium phaeobacteroides DSM 266]
gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlorobium phaeobacteroides DSM 266]
Length = 472
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 194/381 (50%), Gaps = 34/381 (8%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVN 120
F A+ G+H D H++I E++ KG + + + EG G + + + L
Sbjct: 46 FVALQGEHTDGHQYID-EVFAKGAHWAMVKKAWYESEGAPAAPEGCGFLVVEDPVAGLQR 104
Query: 121 MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG 180
+A R + FS ++ V GS GK+TTK M+A L + G V S GN NN +GV L+L+
Sbjct: 105 LAAIYRQT-FSIPVIAVGGSNGKTTTKEMVAAVLGT-GFTVQTSKGNLNNHLGVPLTLLQ 162
Query: 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240
+ R IAV+EMG++ GE+ L +ARP ++ N+G HLE L +LE VA + +F+
Sbjct: 163 LRRQTGIAVVEMGINHPGEMELLLELARPTHGLLTNIGHEHLEFLLNLEGVAAEETRLFR 222
Query: 241 E-SKLGDVCVLNADDPLVANLTVPRGVRKVF-FGW----RRGCDVRLVAA--------QV 286
+ G C +NADD + G+ F +G + C R +A +
Sbjct: 223 YLQQHGGTCFVNADDLWLKE--AAEGLTGSFTYGTADDSQIACQARHIAVDRSGRVSFEF 280
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+GGL ER + F+ G H INA AAAAV T FG+SL Q+ L P
Sbjct: 281 VSGGL-------SERIALHFI----GKHNVINALAAAAVGTYFGLSLEQIKKGLEALRPS 329
Query: 347 QMRSELLVSRSG-IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
L V +G + ++ND YNAN S R AID L DI C+GK++ +LGDMLELG
Sbjct: 330 PGWKRLEVQDAGGVVLINDTYNANSDSMRLAIDALVDIPCSGKKIAVLGDMLELGEAGIV 389
Query: 406 SHEKILSYCCDACIDLIGLVG 426
HEK Y + IDL+ G
Sbjct: 390 EHEKTGRYIQQSPIDLLFTYG 410
>gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus COL]
gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus str. Newman]
gi|379015209|ref|YP_005291445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VC40]
gi|417650402|ref|ZP_12300174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21189]
gi|417900243|ref|ZP_12544133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21266]
gi|418320090|ref|ZP_12931454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VCU006]
gi|418571347|ref|ZP_13135583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21283]
gi|418875946|ref|ZP_13430195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|418907014|ref|ZP_13461035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC345D]
gi|440707009|ref|ZP_20887724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21282]
gi|440735443|ref|ZP_20915049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus DSM 20231]
gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus COL]
gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus str. Newman]
gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21189]
gi|341848923|gb|EGS90078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21266]
gi|365228406|gb|EHM69590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VCU006]
gi|371980515|gb|EHO97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21283]
gi|374363906|gb|AEZ38011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus VC40]
gi|377761470|gb|EHT85341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC345D]
gi|377768372|gb|EHT92155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|436430654|gb|ELP28013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus DSM 20231]
gi|436506495|gb|ELP42290.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21282]
Length = 452
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 198/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus USA300_TCH959]
Length = 452
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|418313943|ref|ZP_12925425.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21334]
gi|365234557|gb|EHM75487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21334]
Length = 452
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 200/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|418283359|ref|ZP_12896106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21202]
gi|365167695|gb|EHM59073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21202]
Length = 452
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 200/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R ++ KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSRSIS--KNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTSIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVNEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|378826598|ref|YP_005189330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sinorhizobium fredii HH103]
gi|365179650|emb|CCE96505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Sinorhizobium fredii HH103]
Length = 477
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 201/391 (51%), Gaps = 29/391 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGII--CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GII D+R +A K + FFAI G D H++ L
Sbjct: 4 LWTCSDLLAAMNGRPVGNLPEGIIGISIDSRTIA--KGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + V+ + L +++ + C AR+ R + ++ VTGS
Sbjct: 62 NGASLLVVSEGKLPALGRLIAPMIVVD-----DVLEAMIRLGCAARD-RSAAKVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L LG V S ++NN GV L+L + + + E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPLG-RVHASIASFNNHWGVPLTLARMPETTEFGIFEIGMNHHGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L M RP + VV ++ +HL + SL+++A AK EIF+ G V+N D P L+
Sbjct: 175 RPLTAMVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVINRDSPQFDLL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLV--AAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
GV + FG + RL+ A + GL + + RE+ I +PG H
Sbjct: 235 ERAAAAAGVSHIHSFGANPKSEYRLIEFAGGAESSGLWAGIG-GRTREV---TIGAPGRH 290
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPI 371
+A NA A A A L G L +V SL+ P + +R L + + +++++YNANP
Sbjct: 291 IAENALAVIAAAQLAGADLDRVLASLATMQPEKGRGLRHRLKIGGGHLTLIDESYNANPA 350
Query: 372 STRAAIDLLKDIA--CNGKRVVILGDMLELG 400
S RAAI LL+D G+R+ ILGDMLE+G
Sbjct: 351 SMRAAIALLRDAEPRAGGRRIAILGDMLEMG 381
>gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus MW2]
gi|49486875|ref|YP_044096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp.
aureus MSSA476]
gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH70]
gi|418989149|ref|ZP_13536817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|448742180|ref|ZP_21724132.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus KT/314250]
gi|448743157|ref|ZP_21725069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus KT/Y21]
gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus MW2]
gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus MSSA476]
gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH70]
gi|377715677|gb|EHT39864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|445547051|gb|ELY15325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus KT/314250]
gi|445563510|gb|ELY19669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus KT/Y21]
Length = 452
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 199/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|384550879|ref|YP_005740131.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus JKD6159]
Length = 452
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 198/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPVIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNTLVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus D139]
gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus D139]
Length = 452
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPVIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
[uncultured Termite group 1 bacterium phylotype Rs-D17]
gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
[uncultured Termite group 1 bacterium phylotype Rs-D17]
Length = 466
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 216/413 (52%), Gaps = 26/413 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ + ++ V GK +K G PG + D+R + K + +FA+ G +D H+FI E
Sbjct: 4 FYLKDLMRVVGGKFVK-GNPGFSANGVSIDSRTI--KKGEVYFAMQGARYDGHDFIK-EA 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQV--EGNGNVNTLNSLVNMACYARNSR--FSGV-LVGV 137
KG V VC+ FV+ + + T ++L+++ +A++ R F + + G+
Sbjct: 60 INKGAAAV----VCSKDKIDFVKSFPDSVSIIKTNDTLISLGEFAKSYRTKFKSIKIAGI 115
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+TTK ++ G + GN+NNR+G+ LS+ + ++ AV EMG S +
Sbjct: 116 TGSNGKTTTKEILVSIFNRKG-RTLSNKGNFNNRIGIPLSIFNLTSDIEYAVFEMGTSLR 174
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L+ + P+ ++ NVG SHLE+ S + V K +F K V+N DD +
Sbjct: 175 GEIKILSDILNPDAGIITNVGFSHLETFISPKGVFEEKKVLFDNVKETGFIVINNDDEFL 234
Query: 258 ANLTVPRGV-RKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
+T P+ V RK+ F DV ++ + + ++ + VK +P+ G
Sbjct: 235 --MTAPQYVSRKIIAFALDVAADVCAKNIKLYSNKMDFEIFYKGTS--VKIAMPAKGRFN 290
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
NA AA A A FG SL ++ + NF P +MR E LV+ + + ++NDAYNANP S +
Sbjct: 291 VSNALAAVACAIGFGFSLDEIKCGIENFMPPKMRMETLVTGTDVVLINDAYNANPSSMKK 350
Query: 376 AIDLLKDIACNGKRV-VILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AI + + +GK++ ++LGDMLELG + H ++ + + + L+G+
Sbjct: 351 AIQAVLQ-SYSGKKINLVLGDMLELGDKSADYHSELGKFINAHDVSSVHLLGE 402
>gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus H19]
gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus H19]
Length = 438
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 131/404 (32%), Positives = 208/404 (51%), Gaps = 31/404 (7%)
Query: 29 INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGC 87
IN + + +NG + D+R A +KN F G++ D H F+S L G G
Sbjct: 5 INFLNQEING----------VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGA 52
Query: 88 VGVI-GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKST 145
G + N + VE +TL +L +A Y R+ + ++ VTGS GK+T
Sbjct: 53 AFYQRGTPIDENVSGPVIWVE-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTT 105
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK MI L + V ++ GN+NN +G+ L+++ +D +I++LEMGMSG EI L+
Sbjct: 106 TKDMIESVLHT-EFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSN 164
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPR 264
+A+P+I V+ N+G+SH++ LGS E +A+AK EI K + + D+PL+ ++
Sbjct: 165 LAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVE 224
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
+ + G D LV + G+ + + + +P G H NA A A
Sbjct: 225 NAKCISIGV--ATDNALVCSVDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIA 279
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
V G++ + +L N S MR E + I ++NDAYNA+P S RAAID L +
Sbjct: 280 VGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT 339
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
G+R++ILGD+LELG +E H + +Y + ID++ G+
Sbjct: 340 --GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNE 381
>gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus pseudofirmus OF4]
gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
pseudofirmus OF4]
Length = 455
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 201/400 (50%), Gaps = 46/400 (11%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGV------IGNQVCNNWDKG 102
+ TDTR + + F + G+ F+ H+++ + + + + +++
Sbjct: 26 VSTDTRTIV--EGALFVPLKGERFNGHDYVDAAIKSGAQAALWEEGQPVPAALPDDFQLY 83
Query: 103 FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
V+ +TL +L MA A + + ++G+TGS GK+TTK ++A +L SL +
Sbjct: 84 VVK-------DTLFALQEMAS-AYRVKINPKVIGITGSNGKTTTKDILA-SLLSLEGETY 134
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ GN+NN +G+ L+++ + +LEMGMSG GEI L+ +A+P++ +V N+G+SH+
Sbjct: 135 KTQGNYNNHIGLPLTILAMPSTCKYLILEMGMSGYGEIERLSEIAKPDLAIVTNIGESHM 194
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR-- 280
E LGS +A+AK EI + +++D+PL+ GW++ +R
Sbjct: 195 EQLGSRAGIAKAKMEIKEGLSPAGFLFIDSDEPLLD-------------GWKQSSIMRVG 241
Query: 281 -----LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQ 335
++ VA G Q +E F + G H NA AVA FG+ ++
Sbjct: 242 FNHADILVENVAATVDGYQFDIEGHH----FELSLLGKHNVKNAAYCIAVARKFGLVTSK 297
Query: 336 VGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395
+ L S MR E L G IVNDAYNA+P S AAID LK I KRVV+LGD
Sbjct: 298 IQTGLRQISLTSMRLEKLTGNKGELIVNDAYNASPTSMIAAIDALKAIPSYEKRVVVLGD 357
Query: 396 MLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKW 435
M ELG TE E+ K ++ I + +GDR KW
Sbjct: 358 MFELG-TEEEALHKSVAQVITPPITHVLTLGDR----AKW 392
>gi|430004084|emb|CCF19875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium sp.]
Length = 477
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 208/434 (47%), Gaps = 34/434 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + ++ G+ + P GI I D+R +AP + FFAI G D H+F S +
Sbjct: 4 LWTCDAMVGAMEGRPVGTLPEGITGISIDSRSIAPG--EAFFAIKGDRVDGHDFASIAVA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + VE + L +L + +R R +V VTGS
Sbjct: 62 NGASLIVVSEAKLPAMGRLTIPMIVVE-----DVLTALGKLGIASRQ-RSRAQIVAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L G V + ++NN GV L+L + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPFG-TVHAAVASFNNHWGVPLTLARMPEEAQFGVFEIGMNHPGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +M RP + ++ + +HL +LE++A AK EIF+ + G +LN D+ A L
Sbjct: 175 RPLVKMVRPHVAIITTIAAAHLGHFRNLEEIAAAKAEIFEGLEPGGAAILNRDNKQFAFL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
GV +++ FG D RL A V E V+ I +PG H+A
Sbjct: 235 EQRAQEVGVGRIYTFGQHAKADFRL--ADFEGNAQSSTVWATLSGETVEVEIGTPGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE---LLVSRSGIKIVNDAYNANPIST 373
NA A TL G L + +L+ PV+ R E L + + +++++YNANP S
Sbjct: 293 ENAMAVLGACTLVGADLGKAVAALAELRPVKGRGEQHRLGIGEGILTLIDESYNANPASM 352
Query: 374 RAAIDLL--KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV- 430
RAAI LL + +G+R+ ILGDMLE+G + HE++ A I+ + L G +
Sbjct: 353 RAAIALLAASEPVASGRRIAILGDMLEMGEFSAKVHEELAGPILAAGIEHVWLAGAEMAV 412
Query: 431 --------VQCKWR 436
V C++R
Sbjct: 413 LRDALPESVHCEYR 426
>gi|416841692|ref|ZP_11904547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus O11]
gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus O11]
Length = 452
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 199/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + +
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWI 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 472
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 205/397 (51%), Gaps = 24/397 (6%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
P+WT +++ +++ G + P G I D+R +AP + FFAI G H+D H+FI
Sbjct: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHA 60
Query: 82 LY-GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G G V V + V + G + + G + L +L +A AR R ++ +TGS
Sbjct: 61 VQKGAGLVVVNTDMVAS---IGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ +AL S+ + G++NN +GV L+L + VD + E+GMS GEI
Sbjct: 117 VGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + RP I V+ + +HL + +E++A AK EIF+ + LN DD L
Sbjct: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
Query: 261 TVPR---GVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLE-KEREMVKFVIPSPGLHL 315
G++ ++ FG + D +L + + ++V L+ K E+V I G H+
Sbjct: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI---GYHM 292
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL---VSRSGIKIVNDAYNANPIS 372
A N + ++ + +LS F P + R + +++ +++++YNANP S
Sbjct: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
Query: 373 TRAAIDLLKDIACN--GKRVVILGDMLELGSTERESH 407
+AAI +L I+ + G+R+ +LGDM E+G + H
Sbjct: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
>gi|333924513|ref|YP_004498093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333750074|gb|AEF95181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 456
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 208/404 (51%), Gaps = 16/404 (3%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+TI EIA G I++ P + CTD+R F A+ G+ D H+F +
Sbjct: 4 YTIKEIAAVTGGTIIQGNPAAEVNGLCTDSR--RAKNGDIFVAMRGRQVDGHDFALKAIE 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
++ V ++V +T+ +L +A + R SR + +V VTGS GK
Sbjct: 62 QGATALLVTKTVTVPPQVAVIKVS-----DTIQALQQLAAHNR-SRLNIPVVAVTGSNGK 115
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK MIA L + ++ GN+NN +G+ L+L+ +D+ AV+EMGM G GEI L
Sbjct: 116 TSTKDMIAAVLNTR-YKTLKTQGNYNNELGLPLTLLALDQTHQAAVVEMGMRGFGEIDLL 174
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR+A+P V+ N+G++HLE LGS++++A AK E+ +LN D P + N V
Sbjct: 175 ARLAKPTGAVITNIGEAHLELLGSVQNIAAAKAEVLDHIGAEGFAILNGDSPELRN-QVS 233
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
R +V+F + LVA V G GV+ L + +P PG H +N+ AA
Sbjct: 234 RCQGQVWF-YSINGQTDLVARNVRVEGRGVRYDLSYPGGTGEIYLPIPGSHNVMNSMAAV 292
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
V G+ + L+ MR E++ + + + ++ND YNANP ST+AA+ +L ++
Sbjct: 293 GVGLRLGIPFTDIVRGLAQVELTGMRLEIIKANN-MTVINDVYNANPSSTKAALKVLAEV 351
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
A G+++ +LG+M ELG+ H ++ I + VGD
Sbjct: 352 AP-GRKIAVLGNMYELGALAESGHREVGEAAALRGIAQLVTVGD 394
>gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 68-397]
gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus E1410]
gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus M876]
gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C160]
gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M899]
gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C427]
gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C101]
gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus A017934/97]
gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 58-424]
gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M809]
gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M1015]
gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MN8]
gi|384866999|ref|YP_005747195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH60]
gi|415684902|ref|ZP_11449931.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus CGS00]
gi|417887140|ref|ZP_12531276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21195]
gi|418565150|ref|ZP_13129565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21264]
gi|418582900|ref|ZP_13146973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|418595159|ref|ZP_13158784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21342]
gi|418600967|ref|ZP_13164416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21345]
gi|418892595|ref|ZP_13446706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|418898668|ref|ZP_13452735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418901469|ref|ZP_13455520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|418909907|ref|ZP_13463897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG149]
gi|418918126|ref|ZP_13472080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|418923795|ref|ZP_13477707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|418983028|ref|ZP_13530732.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|418986648|ref|ZP_13534329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus MRSA252]
gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus 68-397]
gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
subsp. aureus E1410]
gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus M876]
gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C101]
gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C427]
gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M899]
gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus C160]
gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus A017934/97]
gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M1015]
gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 58-424]
gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus M809]
gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MN8]
gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH60]
gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus CGS00]
gi|341858412|gb|EGS99205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21195]
gi|371974774|gb|EHO92090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21264]
gi|374400384|gb|EHQ71499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21345]
gi|374402292|gb|EHQ73324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21342]
gi|377700705|gb|EHT25039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|377702655|gb|EHT26975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|377702763|gb|EHT27082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|377709134|gb|EHT33405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|377729735|gb|EHT53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|377732974|gb|EHT57023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|377748969|gb|EHT72923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|377749870|gb|EHT73809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG149]
gi|377758227|gb|EHT82113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC341D]
Length = 452
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 131/391 (33%), Positives = 204/391 (52%), Gaps = 35/391 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFEGENVDGHRFVSKALQDGAGAAFYQKGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
GS E +A+AK EI K + + D+PL+ P V++V + + ++
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLK----PH-VKEV-------ENAKCISIG 246
Query: 286 VANGGLGVQVVLEKEREMVKFVI--------PSPGLHLAINACAAAAVATLFGVSLAQVG 337
VA V V +++ + F I P G H NA A AV G++ +
Sbjct: 247 VATDNALVCCVDDRDTTGISFTINNKEHYDLPILGKHNMKNATIAIAVGHELGLTYNTIY 306
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
+L N S MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+L
Sbjct: 307 QNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVL 364
Query: 398 ELGSTERESHEKILSYCCDACIDLIGLVGDR 428
ELG +E H + +Y + ID++ G+
Sbjct: 365 ELGENSKEMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 460
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 197/365 (53%), Gaps = 15/365 (4%)
Query: 48 IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVE 107
++ TD+R + P F A G+ FD H+F + L G V V V N+ +G +
Sbjct: 27 LVTTDSREVRPG--CIFVAFPGEKFDGHDFAAKALE-NGAVYV----VVNHPVEGVPAEK 79
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
++ ++++ M R S++ +VGVTGSVGK+TTK M AL G + ++ GN
Sbjct: 80 AILCPDSYHAMMVMGANYR-SQYHPKMVGVTGSVGKTTTKQMTYAALAGFGETI-KTEGN 137
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +G+ +L+ ++ + AV+EMGMS GEI LAR ARP++ ++ +G SH+ +LGS
Sbjct: 138 QNNELGMPRTLMRLESNTEYAVIEMGMSHAGEIDRLARAARPDVGIITCIGVSHIGNLGS 197
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGW-RRGCDVRLVAAQV 286
E++ +AK EI G VLN DD + +P V+ V+F DV A +
Sbjct: 198 QENICKAKLEICNGLPEGAPLVLNYDDKFLRAAKLPAHVKPVWFSLADENADV--CALSI 255
Query: 287 ANGGLGVQVVLEKEREMVKFV-IPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
G+ VLE + E V IP+ G H NA AA AT G V LSNF
Sbjct: 256 RQEEDGMSFVLEDQEEGTFVVKIPAMGKHNVANALAAYCAATRLGCDPRGVIKGLSNFEQ 315
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
R +++ S+ G+ ++ D YNANP S +AA+ + K+ C +R +LGDMLELG RE
Sbjct: 316 TGRRQKVVHSK-GVTVIEDCYNANPDSMKAALAMFKEFPCK-RRFALLGDMLELGELSRE 373
Query: 406 SHEKI 410
+HE++
Sbjct: 374 AHEEL 378
>gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus Mu50]
gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus N315]
gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus JH9]
gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus JH1]
gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus Mu3]
gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus str. CF-Marseille]
gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9781]
gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9763]
gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9299]
gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A8115]
gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A6300]
gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A6224]
gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A5937]
gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus ED98]
gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A8117]
gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A10102]
gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MR1]
gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
gi|384865267|ref|YP_005750626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|387151208|ref|YP_005742772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D- alanyl ligase
[Staphylococcus aureus 04-02981]
gi|415694065|ref|ZP_11455645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus CGS03]
gi|417651636|ref|ZP_12301396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21172]
gi|417655388|ref|ZP_12305101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21193]
gi|417795557|ref|ZP_12442777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21305]
gi|417803229|ref|ZP_12450274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21318]
gi|417892681|ref|ZP_12536728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21201]
gi|418315854|ref|ZP_12927306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21340]
gi|418425252|ref|ZP_12998346.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS1]
gi|418428144|ref|ZP_13001133.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS2]
gi|418431029|ref|ZP_13003931.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS3a]
gi|418434934|ref|ZP_13006786.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS4]
gi|418437702|ref|ZP_13009480.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS5]
gi|418440631|ref|ZP_13012318.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS6]
gi|418443606|ref|ZP_13015193.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS7]
gi|418446603|ref|ZP_13018065.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS8]
gi|418449688|ref|ZP_13021060.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS9]
gi|418452528|ref|ZP_13023851.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS10]
gi|418455484|ref|ZP_13026735.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418458360|ref|ZP_13029551.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418567930|ref|ZP_13132289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21272]
gi|418638732|ref|ZP_13201015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-3]
gi|418652301|ref|ZP_13214269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-99]
gi|418661299|ref|ZP_13222891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-122]
gi|418878940|ref|ZP_13433171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|418881778|ref|ZP_13435990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|418884408|ref|ZP_13438598.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|418887112|ref|ZP_13441255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|418895678|ref|ZP_13449769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1057]
gi|418915214|ref|ZP_13469181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418920911|ref|ZP_13474839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|418932400|ref|ZP_13486228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1750]
gi|418991999|ref|ZP_13539657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|419783574|ref|ZP_14309358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-M]
gi|424771981|ref|ZP_18199097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CM05]
gi|443637664|ref|ZP_21121735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21236]
gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus N315]
gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus Mu50]
gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus JH9]
gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus JH1]
gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus Mu3]
gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9781]
gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9763]
gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A9299]
gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A8115]
gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A6300]
gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A6224]
gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
A5937]
gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus ED98]
gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A10102]
gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A8117]
gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D- alanyl ligase
[Staphylococcus aureus 04-02981]
gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus CGS03]
gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21172]
gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21193]
gi|334270917|gb|EGL89313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21305]
gi|334272867|gb|EGL91222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21318]
gi|341857247|gb|EGS98063.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21201]
gi|365242442|gb|EHM83149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21340]
gi|371981119|gb|EHO98306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21272]
gi|375020733|gb|EHS14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-3]
gi|375022085|gb|EHS15577.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-99]
gi|375039090|gb|EHS32034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-122]
gi|377692853|gb|EHT17232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|377692976|gb|EHT17353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1057]
gi|377711482|gb|EHT35713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1750]
gi|377713241|gb|EHT37450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|377721407|gb|EHT45539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|377723841|gb|EHT47962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|377729774|gb|EHT53857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|377754657|gb|EHT78564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377762456|gb|EHT86319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|383364871|gb|EID42176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-M]
gi|387716293|gb|EIK04352.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS2]
gi|387716988|gb|EIK05023.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS3a]
gi|387717048|gb|EIK05074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS1]
gi|387723830|gb|EIK11541.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS4]
gi|387725447|gb|EIK13061.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS5]
gi|387728590|gb|EIK16074.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS6]
gi|387733389|gb|EIK20573.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS8]
gi|387734874|gb|EIK22023.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS7]
gi|387735069|gb|EIK22208.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS9]
gi|387742474|gb|EIK29289.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS10]
gi|387743011|gb|EIK29810.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387744155|gb|EIK30926.1| murF- UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus VRS11b]
gi|402347511|gb|EJU82539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CM05]
gi|408424042|emb|CCJ11453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408426031|emb|CCJ13418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408428019|emb|CCJ15382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408430008|emb|CCJ27173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408431994|emb|CCJ19309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408433989|emb|CCJ21274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408435981|emb|CCJ23241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|408437964|emb|CCJ25207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ST228]
gi|443405199|gb|ELS63808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21236]
Length = 452
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 442
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 130/392 (33%), Positives = 203/392 (51%), Gaps = 19/392 (4%)
Query: 43 WGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN 98
G P + T D+R + + F + G D H FI E G G + N+
Sbjct: 1 MGDPDTVITGFSVDSRYV--KQGDMFVCLPGDKTDGHNFID-EAIDNGARGCLVNRDIEL 57
Query: 99 WDKGFVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL 157
+ V VN TL +L +A R +F +V VTGS+GK+TTK MIA L
Sbjct: 58 SRRHSVHPPLVIKVNDTLMALQEIARKHR-QKFGVSVVAVTGSIGKTTTKDMIASVLAE- 115
Query: 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
++ +++GN N+ +G+ L L+ + + +AVLEMGM+ +GEI L +ARP + V+ +
Sbjct: 116 KYSILKTHGNLNSEIGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELARPNVGVITRI 175
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRR 275
+SH+E LGSLE++A AKGE+ + G +LN DD V L VP V +++G
Sbjct: 176 AESHIEKLGSLENIAEAKGELLENLLPGGTAILNCDDNWVRRLRSKVPGEV--LYYGLTD 233
Query: 276 GCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQ 335
G D+ +V +++ + E + +P G H NA AA AV +FG+ L Q
Sbjct: 234 G-DLSAYNVRVDKDKTNAKIMSNDKSEQLN--LPLIGKHNLSNALAAIAVGRVFGLDLTQ 290
Query: 336 VGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395
+L F+ MR+++ + I I++D YNAN ST AA D+L ++ N +R+ +LGD
Sbjct: 291 SIRALEGFTGTSMRNQIKYHKDMI-IIDDTYNANVQSTLAAFDVLTNLPLN-RRIAVLGD 348
Query: 396 MLELGSTERESHEKILSYCCDACIDLIGLVGD 427
M ELG ++H+ + + D + VG+
Sbjct: 349 MFELGDYTEKAHKTVGEQAVNRGFDYLITVGE 380
>gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitrosococcus halophilus Nc4]
gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitrosococcus halophilus Nc4]
Length = 448
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 190/369 (51%), Gaps = 28/369 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P F A+ GQ+FD H F++ + KG + Q + QVE
Sbjct: 24 VSTDTRSMTPGA--LFVALKGQNFDGHAFVA-QAREKGASAALLEQTIED---SLPQVE- 76
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ +L +A Y R RF +V VTGS GK+T K MIA L G +V + GN
Sbjct: 77 --VADARTALGQLATYWRQ-RFEHPVVAVTGSNGKTTVKEMIASVLGGAG-SVLATQGNL 132
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+G+D + AV+EMG + EI L+ + RP++ ++ N G +HL+ G L
Sbjct: 133 NNDIGVPLTLLGLDPSHRFAVIEMGANQPSEIGYLSCLVRPQVALITNAGPAHLDGFGDL 192
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDP-------LVANLTVPRGVRKVFFGWRRGCDVRL 281
+ VARAKGEIFQ G V VLNADDP L L V + FG + +V
Sbjct: 193 KGVARAKGEIFQGVNPGGVAVLNADDPHFSYWRDLAGELPV------IGFGLTQSAEV-- 244
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
A +A G + L + PG H +NA AA+AVA G+ Q+ +L+
Sbjct: 245 TAHHLAAHSEGSRFTLVTPVGKTPVQLSLPGRHNVLNALAASAVAIALGLDRDQISAALA 304
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
+ R ++ G+++++D YNANP S +AA++LL + G+R ++LGD ELG
Sbjct: 305 ALPSIPGRLQIRRGAGGMRLLDDTYNANPASLKAALELLAEFP--GERFLVLGDFAELGE 362
Query: 402 TERESHEKI 410
H +
Sbjct: 363 EAAPLHRMM 371
>gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax
ferrireducens T118]
gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodoferax ferrireducens T118]
Length = 480
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/375 (34%), Positives = 194/375 (51%), Gaps = 24/375 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVE- 107
+ TDTR LAP F A+ G+HFDAH+F++ + +G V VC D G V+ +
Sbjct: 32 VHTDTRTLAPGD--LFVALRGEHFDAHDFLA-QAKAQGAVAA----VCQASDAGDVEAKL 84
Query: 108 ------GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
G +T +L +A R ++F+ L+ VTGS GK+T MIA L +
Sbjct: 85 RAVGLPGLLVPDTKLALAQLATQWR-AQFTLPLIAVTGSNGKTTVTQMIAAILRAYKPQA 143
Query: 162 FQS-YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
+ S GN NN +GV L+++ + R +IAV+E+GM+ GEI LA +A+P + +V N
Sbjct: 144 YLSTQGNLNNDIGVPLTVLRLRRQHEIAVVELGMNHPGEIATLAAIAQPTVALVNNAQRE 203
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVANLTVPRGVRKVFFGWRRGC 277
HLE + ++E VA+ G + V V ADD PL A+ R V +
Sbjct: 204 HLEFMATVERVAQENGSVIDALPAHGVAVFPADDTYSPLWADKAGSRVVMRFGSAADGAG 263
Query: 278 DVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337
++ Q G+ QV + +++ +P GLH N+ AA A GV L +
Sbjct: 264 AAQVRCLQADWSGVAWQVAVSTPAGALQYTLPIAGLHNVKNSLAAVACTLAAGVPLKHIA 323
Query: 338 ISLSNFSPVQMRSELLVSRSG---IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394
LS F PV+ RS L+ + G I +V+D+YNANP S RAAID+L + G R+++LG
Sbjct: 324 RGLSAFEPVKGRSRALLIQIGARQITLVDDSYNANPDSVRAAIDVLASLP--GPRLLVLG 381
Query: 395 DMLELGSTERESHEK 409
DM E+G + H +
Sbjct: 382 DMGEVGDQGPQFHAE 396
>gi|347542609|ref|YP_004857246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985645|dbj|BAK81320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 455
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 210/408 (51%), Gaps = 24/408 (5%)
Query: 26 IWTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I I EI + V+G +L G I DTR + N F AI+G++FD +++I +
Sbjct: 2 ILNIEEIVKCVSGNLLIKGTYCEFNKISIDTRTI--NGEDIFLAISGENFDGNKYIFDAI 59
Query: 83 YG--KGCV---GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
K C+ + +D V V+ TL++L +A Y R S+ L+ V
Sbjct: 60 KEGVKLCIIDKDYFSYKEFELYDVSVVLVDS-----TLDALKKLAIYVR-SKLDIDLIAV 113
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK +I L S V++++GN+NN +G+ +SLI ID +I V E+GM+
Sbjct: 114 TGSVGKTTTKDLIYDFLSS-NYKVYKNFGNFNNHLGMPISLINIDDDAEIGVFEVGMNNL 172
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L + RP I V+ N+G SH+E L + E++ +AK EI D+ ++N +D L+
Sbjct: 173 GEIDYLVNILRPHIGVITNIGVSHIEFLKTKENILKAKMEIVNYFNHNDILIVNYEDDLL 232
Query: 258 ANLTVPRG-VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
++ + +V F + CD+ V V+ G+ V+ E E V +P G H
Sbjct: 233 KSINSSDFLINRVGFS-KDCCDMYAVNEDVSLNGIKFDVLYNGEEEGVS--LPLKGKHNI 289
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
+N+ A + +F + + + ++ +P MR E +++ I I+ND YNA+ S ++A
Sbjct: 290 LNSLIAFKLCEIFNIPMDVLRNKFNSLTPASMRQE-IINYKNITIINDCYNASLNSMKSA 348
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGL 424
ID+L ++V I GDM E G E H ++ Y + LI +
Sbjct: 349 IDILS--LYKNEKVGIFGDMGEAGEFAEEYHREVSRYANEKIDKLIAV 394
>gi|427406109|ref|ZP_18896314.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Selenomonas sp. F0473]
gi|425708950|gb|EKU71989.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Selenomonas sp. F0473]
Length = 469
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 138/399 (34%), Positives = 204/399 (51%), Gaps = 27/399 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
T NEI + G+ L G + TDTR + + F A+ G+ FD +F +
Sbjct: 3 FMTWNEIRAATGGRPLYGKLKGSAAFAGVATDTRRV--KAGELFVALRGEKFDGADFAAD 60
Query: 81 ELY-GKGCVGVI-----GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVL 134
L G G V V ++ KG V G +TL + +A +AR +F +
Sbjct: 61 ALRAGAGAVMVAEPLSPAHRNMLEAAKGIVI----GVDDTLTAYQQIA-HARRMKFDIPV 115
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
V VTGS GK+TTK + A L G V ++ N+NN +G+ L+L+GI AV+EMGM
Sbjct: 116 VAVTGSNGKTTTKDLAAAVLSGRGA-VCRTAANYNNEIGLPLTLLGITEKDTAAVVEMGM 174
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
G G+I LA +A P + +V NVG++H+E LGS+E++ARAK E+ + G +LNADD
Sbjct: 175 RGLGQIASLAAVAAPTVGIVTNVGETHMELLGSIENIARAKAELVEAIPSGGTVILNADD 234
Query: 255 PLVANLTVP--RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
VA + VR + + R D+R A + V ER + +P G
Sbjct: 235 ARVAAMRAQARDDVRVLTYSIRAAADIRAEALRTDGARTRFMVTYGGERH--DYAVPLLG 292
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK-IVNDAYNANPI 371
H NA AA A G++ ++ +S+ P +MR E V R G + +NDAYNA+P
Sbjct: 293 RHNVYNALAAVAAGFALGLTPREMQEGISHLRPPKMRYE--VHRVGTRTFINDAYNASPA 350
Query: 372 STRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
S RAA++ + G+++ +LGDMLELG+ E H +
Sbjct: 351 SMRAALETTAAL-YPGRKIAVLGDMLELGAASAEGHRSV 388
>gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitrosococcus watsonii C-113]
gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitrosococcus watsonii C-113]
Length = 454
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 194/379 (51%), Gaps = 16/379 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR LAP F + G FD H FI+ + KG + Q N+ Q+E
Sbjct: 30 VSTDTRSLAPGA--LFVVLRGLRFDGHAFIT-QAREKGASAALLEQRINDP---LPQIEV 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L L AC+ R RF+ +V VTGS GK+T K MIA L + + + GN
Sbjct: 84 ADARIALGQLA--ACWRR--RFARPIVAVTGSNGKTTVKEMIASILGWV-EPILATRGNL 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ +D + AV+EMG + GEI L+R+ RP++ ++ N G +HL+ G L
Sbjct: 139 NNDIGVPLTLLELDTSHSFAVIEMGANRPGEIEYLSRLTRPQVALITNAGPAHLDGFGDL 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVAN-LTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+ VARAKGEIFQ V +LNADDP + + G+ + FG R +V A +
Sbjct: 199 KGVARAKGEIFQGMGSEGVAILNADDPHFSYWRDLAGGLPVMGFGLSRSAEV--TARHIV 256
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
G + L VK +P PG H NA AA+A A GV + SL+ +
Sbjct: 257 ASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALAASAAAIALGVDRQHLSASLAALPSIP 316
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R ++ G+++++D YNANP S +AA++LL G+R ++LGD ELG H
Sbjct: 317 GRLQIRRGIGGMRLLDDTYNANPASLQAALELLAKFP--GERALVLGDFAELGEEAAPLH 374
Query: 408 EKILSYCCDACIDLIGLVG 426
+ + A ++ + +G
Sbjct: 375 QAMGKQARAAGVNRLYTLG 393
>gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
protein [Pseudovibrio sp. JE062]
gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
protein [Pseudovibrio sp. JE062]
Length = 1257
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 213/425 (50%), Gaps = 28/425 (6%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
+ P+W +++ E+V+G + I I D+R + P + FFAI G++FD H F
Sbjct: 782 DHGPLWLLSDFLEAVDGDVHGDLADDITGISIDSRTIQPG--EAFFAIKGENFDGHAFAG 839
Query: 80 PELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
+ V V+ + +G +V V+ + L +L + AR +R ++ V
Sbjct: 840 TAVEAGASVAVVSREKLGELPEGGRYVAVD-----DVLKALERLGVAAR-ARSKARIIAV 893
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+ TK + L L G+ ++NN GV L+L + + + E+GM+ +
Sbjct: 894 TGSVGKTGTKEALRLCLSKSGIT-HAPVASFNNHWGVPLTLARMHADTEFGIFEIGMNHR 952
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD--- 254
GEI L +M RP + +V V HLE+ S+ED+ARAK EIF + G V +LN D+
Sbjct: 953 GEITPLVKMVRPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILNRDNRQY 1012
Query: 255 PLVANLTVPRGVRK-VFFGWRRGCD--VRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311
L+ L GV+ V FG + G + VA L ++ ++ + + I +P
Sbjct: 1013 DLLRYLAAVAGVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQE----ISYKIGAP 1068
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE---LLVSRSGIKIVNDAYNA 368
G H IN+ G +LA G++L+ S + R L V+ +V+++YNA
Sbjct: 1069 GAHHVINSLGVLTGVMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESYNA 1128
Query: 369 NPISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
NP S RAAI+L+ + NG+R+ +LGDMLELG+ + H + A ID++ VG
Sbjct: 1129 NPASMRAAINLVAGLPVEKNGRRIAVLGDMLELGADSDKLHADLARELERAKIDIVYCVG 1188
Query: 427 DRVVV 431
+ V
Sbjct: 1189 THMKV 1193
>gi|410583573|ref|ZP_11320679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermaerobacter subterraneus DSM 13965]
gi|410506393|gb|EKP95902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermaerobacter subterraneus DSM 13965]
Length = 475
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 201/412 (48%), Gaps = 28/412 (6%)
Query: 28 TINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+ E+AE+ G+++ G G+ D+R + FFA+ GQ D H+F+ L
Sbjct: 4 AMAEVAEATGGRLVA-GDGGVTVAGGAVDSRRV--EAGNLFFALPGQRVDGHQFVGQALA 60
Query: 84 GKGCVGVIGNQVCNNWDKG------FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
VI + G V+V +T +L ++A + R R +VG+
Sbjct: 61 AGARGAVIARPLAEVLPGGPPPGTAVVEV-----ADTRQALASLARWVRRRRPGLRVVGI 115
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK M A LE V ++ GN+N +G+ L L+ ++ +AVLEM M G
Sbjct: 116 TGSVGKTTTKEMTAAVLEQR-FAVLKTAGNYNTDIGLPLILLDLEDHHQVAVLEMAMRGL 174
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA +A P+I VV V +SHLE LGSLE +A+AKGE+ + V +LNA DP V
Sbjct: 175 GEIARLASIAEPDIGVVTVVAESHLEFLGSLEKIAQAKGELVEALPADGVAILNAGDPRV 234
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE---KEREMVKFVIPSPGLH 314
+ R + FG G DVR VA V + G G + LE + V+ +P P
Sbjct: 235 RAMAARTRARVLTFGVEGGADVRAVA--VESRGPGTRFRLEIPGGDAATVELALPGPAAV 292
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
A AA V G L P +RSE+ + S + D YNA+P ST
Sbjct: 293 TCALAAAAVGVVLGLDADAIAAG--LGRARPASLRSEIRQAGSWTLFI-DCYNASPTSTA 349
Query: 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
AA+ L+ +A + + V ILGDM ELG E H + +D++ VG
Sbjct: 350 AALQALRQVAGDRRAVAILGDMFELGDWAEEGHRRT-GQAAARSVDVLLAVG 400
>gi|384186195|ref|YP_005572091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis serovar chinensis CT-43]
gi|410674487|ref|YP_006926858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Bacillus thuringiensis Bt407]
gi|452198527|ref|YP_007478608.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|326939904|gb|AEA15800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis serovar chinensis CT-43]
gi|409173616|gb|AFV17921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Bacillus thuringiensis Bt407]
gi|452103920|gb|AGG00860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 454
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 211/407 (51%), Gaps = 25/407 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+N++ E VNG+ L+ I +C D++ + K F I D H+++ E
Sbjct: 6 LNKLEEIVNGEGLQESFHYIEMQGVCIDSKKIT--KGNLFVPIIRVK-DGHDYVK-EAME 61
Query: 85 KGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG + + + KG FV +TL +L +A Y R + V +G+TGS
Sbjct: 62 KGAAASLWKKSYGDPPKGIPIIFVD-------DTLLALQKIARYYRKTSNVKV-IGITGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+ K +I+ L S V ++ GN N+++G+ L+++ + + + +LEMGMS G+I
Sbjct: 114 NGKTMVKDIISTIL-STTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILEMGMSETGQI 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++A+P++ ++ +G SHLE+LGS E++A+AK EI G + + N D+PL++
Sbjct: 173 RNLAQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLYNGDEPLLSQN 232
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
G+ FG + D+ Q+ G+ ++ K +++ +P G H N
Sbjct: 233 INMLGIEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSK----IQYDVPLHGKHNIFNTI 288
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AV + V + ++ +L + QMR + L +++G I+NDA+NA+P S +AAI+ L
Sbjct: 289 VGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETL 348
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ + K+++++GDMLELG H +I + I + G+
Sbjct: 349 QKLNAYKKKIIVIGDMLELGKKAETYHREIGEMLNEESIQYVFTYGE 395
>gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum nigrificans DSM 574]
gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfotomaculum nigrificans DSM 574]
Length = 456
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 203/387 (52%), Gaps = 16/387 (4%)
Query: 27 WTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+TI EIA G I++ P + CTD+R F A+ G+ D H+F +
Sbjct: 4 YTIKEIAAVTGGTIIQGNPAAEVNGLCTDSR--RAKNGDIFVAMRGRQVDGHDFALKAIE 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
++ V ++V +T+ +L +A + R SR + +V VTGS GK
Sbjct: 62 QGATALLVTKTVTVPPQVAVIKVS-----DTIQALQQLAAHNR-SRLNIPVVAVTGSNGK 115
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK MIA L + ++ GN+NN +G+ L+L+ +D+ AV+EMGM G GEI L
Sbjct: 116 TSTKDMIAAVLNTR-YKTLKTQGNYNNELGLPLTLLALDQTHQAAVVEMGMRGFGEIDLL 174
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
AR+A+P V+ N+G++HLE LGS++++A AK E+ +LN D P + N V
Sbjct: 175 ARLAKPTGAVITNIGEAHLELLGSVQNIAAAKAEVLDHIGAEGFAILNGDSPELRN-QVS 233
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
R +V+F + LVA V G GV+ L + +P PG H +N+ AA
Sbjct: 234 RCQGQVWF-YSINGQTDLVARNVRVEGRGVRYDLSYPGGTGEIYLPIPGSHNVMNSMAAV 292
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
V G+ + L+ MR E++ + + + ++ND YNANP ST+AA+ +L ++
Sbjct: 293 GVGLRLGIPFTDIVRGLAQVELTGMRLEIIKANN-MTVINDVYNANPSSTKAALKVLAEV 351
Query: 384 ACNGKRVVILGDMLELGSTERESHEKI 410
A G+++ +LG+M ELG+ H ++
Sbjct: 352 AP-GRKIAVLGNMYELGALAESGHREV 377
>gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
albus 7]
gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
albus 7]
Length = 454
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 205/401 (51%), Gaps = 26/401 (6%)
Query: 29 INEIAESVNGKILKWGPPG-----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++EI E+V G +G P I TDTR + + F A+ G +FD H+F + +
Sbjct: 6 LSEIIEAVRGS---YGYPANVEVKDISTDTRTIT--EGSLFIALKGANFDGHDFAAKAM- 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + V+ + + V +T +L++ A Y R S+F LVG+TGSVGK
Sbjct: 60 ELGAIAVVTERPVDGARCLIVD-------STAQALLDSASYYR-SKFDIPLVGITGSVGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MI L S ++ N NN VG+ +L+ +D AV+EMGM+ KGEI +
Sbjct: 112 TTTKEMIYSVL-SRSFKTLKTEANHNNEVGMPKTLLELDNTHQAAVIEMGMNHKGEISRM 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ +P I V+ N+G SH+E+LGS E + +AK EI + +L DD L+A +
Sbjct: 171 STSCKPTICVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILCRDDKLLAKAEIY 230
Query: 264 RGVRKVFFG--WRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
G R+V++ ++ CDV A+ +A G+ + +RE + I G H NA A
Sbjct: 231 GG-RQVWYYSVSKKDCDV--YASDIAADSKGISFTIHYKREKLNARINCLGEHNVKNALA 287
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A G+ + L++F P MR +++ +G+ V D YNA P S +A++ +L
Sbjct: 288 AFCAGAAAGMENEDIIAGLADFRPEGMRQN-IITENGMTFVLDCYNAAPDSMKASLSVLS 346
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
I+ G+R +LGDMLELG H + Y + D++
Sbjct: 347 QISVRGRRFAVLGDMLELGKGTARYHRTVGEYVKASKTDVL 387
>gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodomicrobium vannielii ATCC 17100]
gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodomicrobium vannielii ATCC 17100]
Length = 477
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 203/417 (48%), Gaps = 36/417 (8%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
P+WT EIA + L PP + D+R + + F AI G+ D H FI
Sbjct: 9 PLWTGAEIA-----RALGIAPPAADVVVTGVSIDSRTV--ERGDLFVAIKGERSDGHRFI 61
Query: 79 SPELYGKGCVGVI-----GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV 133
+ + G G + QV D+ +V+ + +L + AR +R
Sbjct: 62 T-AAFDNGAAGALVSRDYAPQVPLAADEPLFRVD-----DPFAALEELGRVAR-ARTDAR 114
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
+ VTGSVGK+TTK M+ + L G S ++NN +GV LSL + A V E+G
Sbjct: 115 IAAVTGSVGKTTTKEMLRVMLGESG-PTHASVKSYNNFMGVPLSLARMPAASRFGVFEIG 173
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
M+ GEI+ LA++ RP + +V V H+E S ++ARAK EIF+ + G +L AD
Sbjct: 174 MNHAGEIVPLAKLVRPHVAIVTWVAPVHIEFFTSEAEIARAKAEIFEGLEQGGAAILPAD 233
Query: 254 DPLVANLTV---PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS 310
+P +L R R V FG + RLV+ + G V + +R V F + +
Sbjct: 234 NPHFESLAAFARERSARVVPFGLSSEAEARLVSFERTEEGSVVTADIFDQR--VTFALAA 291
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR---SELLVSRSGIKIVNDAYN 367
PG HLA NA AA A +L G ++ +L+ F + R + R + +++++YN
Sbjct: 292 PGRHLAQNAVAALAGVSLLGGNVEAAAAALARFEAPEGRGRSATFETPRGPVLVIDESYN 351
Query: 368 ANPISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
ANP S AA+D+L + + +R+ +LGDMLELG + H + S IDL+
Sbjct: 352 ANPASMHAALDVLGAVPPSRYARRIAVLGDMLELGHDAPQFHASLASAVDSNAIDLV 408
>gi|228939328|ref|ZP_04101920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228972206|ref|ZP_04132821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228978821|ref|ZP_04139190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis Bt407]
gi|228780897|gb|EEM29106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis Bt407]
gi|228787519|gb|EEM35483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228820352|gb|EEM66385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar berliner ATCC 10792]
Length = 460
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 211/407 (51%), Gaps = 25/407 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+N++ E VNG+ L+ I +C D++ + K F I D H+++ E
Sbjct: 12 LNKLEEIVNGEGLQESFHYIEMQGVCIDSKKIT--KGNLFVPIIRVK-DGHDYVK-EAME 67
Query: 85 KGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG + + + KG FV +TL +L +A Y R + V +G+TGS
Sbjct: 68 KGAAASLWKKSYGDPPKGIPIIFVD-------DTLLALQKIARYYRKTSNVKV-IGITGS 119
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+ K +I+ L S V ++ GN N+++G+ L+++ + + + +LEMGMS G+I
Sbjct: 120 NGKTMVKDIISTIL-STTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILEMGMSETGQI 178
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++A+P++ ++ +G SHLE+LGS E++A+AK EI G + + N D+PL++
Sbjct: 179 RNLAQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLYNGDEPLLSQN 238
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
G+ FG + D+ Q+ G+ ++ K +++ +P G H N
Sbjct: 239 INMLGIEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSK----IQYDVPLHGKHNIFNTI 294
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AV + V + ++ +L + QMR + L +++G I+NDA+NA+P S +AAI+ L
Sbjct: 295 VGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETL 354
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ + K+++++GDMLELG H +I + I + G+
Sbjct: 355 QKLNAYKKKIIVIGDMLELGKKAETYHREIGEMLNEESIQYVFTYGE 401
>gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridiales bacterium 1_7_47_FAA]
gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Clostridiales bacterium 1_7_47FAA]
Length = 487
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 175/317 (55%), Gaps = 8/317 (2%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+T +L + Y R SR LVG+TGSVGK+TT+ MIA AL S G V+++ GN N++V
Sbjct: 108 DTKKALQDFGIYCR-SRQKLPLVGITGSVGKTTTREMIAAAL-SAGFTVYKTPGNSNSQV 165
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
GV +++ I + I V+E+GMS GE+ +AR+AR + V+ N+G +H+E LGS +++
Sbjct: 166 GVPITIAAIPKQAQIGVIELGMSEPGEMTRIARIARVDCAVMTNIGVTHIEQLGSQDNIL 225
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRG-VRKVFFGWRRGCDVRLVAAQVANGGL 291
+ K I +LN DD L+ ++ +P G RK+ +G C R + NG
Sbjct: 226 KEKLHIQDGMAENGSLILNGDDRLLRSV-IPEGNRRKILYGMSDDCQYRGEDLHLVNGYP 284
Query: 292 GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE 351
V E +R V+ + G H+ NA AA AVA +G+ + L F + R +
Sbjct: 285 VFSAVHENKRVTVRLRV--MGSHMVSNALAALAVAHEYGIPMEAAAAKLEEFEGFKGRQQ 342
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEK 409
+ + GI +++D+YNA+P+S +A +++L + G+R+ +L DM ELG H +
Sbjct: 343 IFTLKGGITVIDDSYNASPVSMKAGLEVLGSMEPEGTGRRIAVLADMKELGPDAPRFHRE 402
Query: 410 ILSYCCDACIDLIGLVG 426
I Y +D + L+G
Sbjct: 403 IGEYIAVHPVDQVVLLG 419
>gi|372222989|ref|ZP_09501410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Mesoflavibacter zeaxanthinifaciens S86]
Length = 424
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 203/396 (51%), Gaps = 25/396 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN FFA+ G +F+ + F L +G I ++V + + V+
Sbjct: 16 VSTDTRKITPN--CLFFALKGPNFNGNTFAEQAL-AQGASFAIVDEVTYKTSEKTILVD- 71
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y RN + + V +TGS GK+TTK +I L S N ++GN
Sbjct: 72 ----DVLETLQKLAIYHRNYCKTKI-VSLTGSNGKTTTKELIHAVL-STTYNTIATHGNL 125
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + +I ++EMG + +GEI L+ +A+P+ + N G +HLE G +
Sbjct: 126 NNHIGVPLTLLRLTPETEIGIIEMGANHQGEIAFLSNLAQPDFGYITNFGKAHLEGFGGV 185
Query: 229 EDVARAKGEIFQESKLGDVCV-LNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E V + K E++ + D + LNADDP+ + V+K+ F + ++ ++
Sbjct: 186 EGVIKGKSELYNYLQEHDKHIFLNADDPIQLE-KLSGYVKKIGFSQNQQNYYQI---KLL 241
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
+ V++ E+ + + G + N CAA + F V ++ +L N+ P
Sbjct: 242 DTNPNVRLQFEEVTVQTQLI----GTYNFTNCCAAITIGKYFNVPKEKIKSALENYKPKN 297
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
RS++L ++G KI+ DAYNANP ST AA+ + K++V LGDM E+G T +E H
Sbjct: 298 NRSQVL-EKNGYKIILDAYNANPTSTSAALSSFAALKA-MKKIVFLGDMFEVGPTAKEEH 355
Query: 408 EKILSYCCDACIDLIGLVGDRV----VVQCKWRKWS 439
+ I Y ++ LVG+ K+R ++
Sbjct: 356 QSIADYLDSLGLEHAYLVGENYYQVKTTAYKFRNFN 391
>gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dechloromonas aromatica RCB]
gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dechloromonas aromatica RCB]
Length = 456
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/404 (33%), Positives = 216/404 (53%), Gaps = 16/404 (3%)
Query: 27 WTINEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
W ++++A++V G+++ + TDTR + + Q F A+ G++FDAH+F++P +
Sbjct: 3 WLLSQVAQAVQGRLIGADVSIDGVSTDTRAI--TEGQLFIALAGENFDAHDFLAPAIAAG 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
++ ++ V V+ +T +L +A R ++F+ ++ VTGS GK+T
Sbjct: 61 ATALMVADESKVPTGVPAVVVD-----DTRLALGRLAAAWR-AKFNLPVIAVTGSNGKTT 114
Query: 146 TKSMIALALES-LGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TK M+A L++ G V + GN NN +G+ L+L+G+ + AV+EMGM+ GEI LA
Sbjct: 115 TKEMVAAILKAAFGAAVLSTRGNLNNDIGLPLTLLGLRASHRAAVIEMGMNHPGEIGYLA 174
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+ P + ++ N +HLE +G L++VAR KG IF V V+NADD
Sbjct: 175 PIGAPTVALITNAQRAHLEGMGDLDEVAREKGSIFLGLPANGVAVINADDAYAGLWRGMA 234
Query: 265 GVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
G R V FG D V+A+V GL + + L ++ PG H A NA AAA
Sbjct: 235 GGRPVRTFGIDNAAD---VSAKVRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVAAA 291
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
A G+ + V L FS V+ R + + G +I++D YNANP S RA ID+L
Sbjct: 292 AACLAAGIPMVAVIAGLEAFSGVKGRLQRRTGKQGAEILDDTYNANPDSVRAGIDVLA-- 349
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
A G+++++LGDM E+G + H++I Y ID + +G+
Sbjct: 350 ATIGRKLLVLGDMGEIGEASGQYHDEIGGYAKSQGIDRLFALGE 393
>gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|385789939|ref|YP_005821062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Fibrobacter succinogenes subsp. succinogenes S85]
gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 461
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 195/384 (50%), Gaps = 28/384 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWD-KGFVQVE 107
+C D+R A K F+ I G FDAH+F+S ++ G + + NQ + + K + VE
Sbjct: 33 LCMDSRESA--KGVVFWPIKGARFDAHQFVS-QMEKDGALMSVVNQTAIDPNFKMYAPVE 89
Query: 108 GNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+T +L+ +A Y R F V +TGS GK+TTK M L S+ N + G
Sbjct: 90 -----DTTKALLKLAKGYQR--LFKLKKVAITGSNGKTTTKEMTKAVL-SMKYNTHATKG 141
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV ++L + + + AV+EMG SG EI L+ P+I V+ N+G SHLE LG
Sbjct: 142 NFNNHIGVPMTLFQLKHSHEAAVVEMGTSGPDEIRPLSLATEPDIAVITNIGASHLERLG 201
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC----DVRLV 282
L+ V K I K ++NADD + + + + V FG RRG ++
Sbjct: 202 DLDGVFNEKINITAGLKENGTLIVNADDERLCKVKATKHYKVVTFGVRRGVVKPEKLKWT 261
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A+ +G FV+ PG H +A AA AV + + +L+
Sbjct: 262 ENLCADFYVG----------RTHFVLNVPGDHNLYDALAAIAVGQALRIPKGDIAKALAG 311
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F+ MR E + + +G K+++D YNANP ST+ A+ L ++ GKR+ +LGDMLELG
Sbjct: 312 FTSTSMRME-IKNANGFKVISDCYNANPSSTKMALQTLGNMRVEGKRIAVLGDMLELGKE 370
Query: 403 ERESHEKILSYCCDACIDLIGLVG 426
H++I + + D++ VG
Sbjct: 371 SGNLHKQIGALVPEMNFDMLLAVG 394
>gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacterium extorquens AM1]
gi|418061963|ref|ZP_12699786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylobacterium extorquens DSM 13060]
gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacterium extorquens AM1]
gi|373564478|gb|EHP90584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylobacterium extorquens DSM 13060]
Length = 487
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/426 (31%), Positives = 201/426 (47%), Gaps = 36/426 (8%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFI 78
S++P+WT + + G+++ G P + DTR L P FFAI G+ D H+F+
Sbjct: 2 SDAPLWTPAALEAATGGRLI--GAPRAVTGASIDTRSLEPG--DLFFAIRGEARDGHDFV 57
Query: 79 SPELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
L V+ ++ + V G G+ L+++ + AR +R +V
Sbjct: 58 RAALEKGAGAAVVAEARAKEFEGAGPVLAVPGEGDDPVLDAMRRLGLAAR-ARTGAAIVA 116
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+ TK + L + G S ++NN GV L+L + V E+GM+
Sbjct: 117 VTGSVGKTGTKEALRHVLSAQGAT-HASVASYNNHWGVPLTLTRMLEDTRFGVFEIGMNH 175
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP- 255
EIL L M RP++ ++ V H+E SL +A AKGEIF K G V V+N D+P
Sbjct: 176 GAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPN 235
Query: 256 ---LVANLTVPRGVRKVFFGWRRGCDV-------RLVAAQVANGGLGVQVVLEKEREMVK 305
L+A+ R R + FG DV R + V +GV V
Sbjct: 236 YERLLAHAQASRAGRVITFGEHAAADVCAHRILTRPDVSVVDATVMGVPVT--------- 286
Query: 306 FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG---IKIV 362
+ + +PG H+A+N+ A G LA+ +SL++ P R E R G +V
Sbjct: 287 YQLGTPGRHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLV 346
Query: 363 NDAYNANPISTRAAIDLLK--DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
+++YNANP S RAA+ L D G+R+ +LGDM ELG+ H ++ ID
Sbjct: 347 DESYNANPASIRAALSTLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGID 406
Query: 421 LIGLVG 426
L+ VG
Sbjct: 407 LVFAVG 412
>gi|418649121|ref|ZP_13211151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-91]
gi|375030380|gb|EHS23697.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-91]
Length = 415
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 197/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G+ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLIYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Stigmatella aurantiaca DW4/3-1]
gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Stigmatella aurantiaca DW4/3-1]
Length = 518
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 193/385 (50%), Gaps = 17/385 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN-QVCNNWDKGFVQVE 107
I TDTR L P F A+ G+ FDAH+F++ G V+ Q F E
Sbjct: 81 ISTDTRSLPPGC--LFVALQGERFDAHDFLAQAHAGGAGGAVVRAGQALPAIPGDFPLYE 138
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A + R RF + V GS GK+TTK M+ L + G ++ GN
Sbjct: 139 ---VPDTLAALGALARFHRE-RFRIPVAAVGGSNGKTTTKEMVGAILATRG-PALKTEGN 193
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN VGV L+L+ ++ + AV+E GM+ GEI L R+ +P+ ++ V HLE LGS
Sbjct: 194 LNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITVVQPEHLEGLGS 253
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV- 286
LE VA A+GE+F+E V V+N DDPL+ +++ FG DVRL +
Sbjct: 254 LEGVAEAEGELFRELSPEAVAVVNLDDPLIPAQAAKGRGKRLTFGRAESADVRLSQVETR 313
Query: 287 ANGGLGVQVVLEKEREMVK--FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
GLG+ V + V+ F+ G H A+NA A A+A G S + L +
Sbjct: 314 GREGLGLTVRYQGRDWPVRLHFI----GEHNALNATGAFALALALGYSPEECVRGLESAR 369
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTE 403
P R ++ G+ +V+D YNANP S AA+D L+ + G R V +LGDMLELG E
Sbjct: 370 PYARRLNVVDGLHGVTVVDDCYNANPASMDAALDTLRTLVTAGGRAVAVLGDMLELGPGE 429
Query: 404 RESHEKILSYCCDACIDLIGLVGDR 428
E H + + L+ G R
Sbjct: 430 LEEHAALGTRAAGRA-QLVAFFGPR 453
>gi|374332618|ref|YP_005082802.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Pseudovibrio sp. FO-BEG1]
gi|359345406|gb|AEV38780.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Pseudovibrio sp. FO-BEG1]
Length = 1235
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/424 (31%), Positives = 215/424 (50%), Gaps = 32/424 (7%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
P+W +++ E+V+G + I I D+R + P + FFAI G++FD H F +
Sbjct: 763 PLWLLSDFLEAVDGDVHGDLADDITGISIDSRTIQPG--EAFFAIKGENFDGHAFAGTAV 820
Query: 83 YGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
V V+ + +G +V V+ + L +L + AR +R ++ VTGS
Sbjct: 821 EAGASVAVVSREKLGELPEGGRYVAVD-----DVLKALERLGVAAR-ARSKARIIAVTGS 874
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+ TK + L L G+ ++NN GV L+L + + + E+GM+ +GEI
Sbjct: 875 VGKTGTKEALRLCLSKSGIT-HAPVASFNNHWGVPLTLARMHADTEFGIFEIGMNHRGEI 933
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLV 257
L +M RP + +V V HLE+ S+ED+ARAK EIF + G V +LN D+ L+
Sbjct: 934 TPLVKMVRPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILNRDNRQYDLL 993
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGG----LGVQVVLEKEREMVKFVIPSPG 312
L GV+ + FG + G + +A +VA L ++ ++ + + I +PG
Sbjct: 994 RYLAAVAGVKNIVSFGMQPGA--QSIAKKVAVNPDCCCLNANILGQE----ISYKIGAPG 1047
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE---LLVSRSGIKIVNDAYNAN 369
H IN+ G +LA G++L+ S + R L V+ +V+++YNAN
Sbjct: 1048 AHHVINSLGVLTGVMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESYNAN 1107
Query: 370 PISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
P S RAAI+L+ + NG+R+ +LGDMLELG+ + H + A ID++ VG
Sbjct: 1108 PASMRAAINLVAGLPVEKNGRRIAVLGDMLELGADSDKLHADLARELERAKIDIVYCVGT 1167
Query: 428 RVVV 431
+ V
Sbjct: 1168 HMKV 1171
>gi|422036437|gb|AFX74862.1| UDP-N acetylmuramyl tripeptide-D-Ala-D-Ala ligase [Staphylococcus
aureus]
Length = 452
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 200/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNIIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|418599090|ref|ZP_13162586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21343]
gi|374398140|gb|EHQ69330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21343]
Length = 452
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLMALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. 2_A_57_CT2]
gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
sp. 2_A_57_CT2]
Length = 457
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 195/378 (51%), Gaps = 27/378 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ D+R + + F G++ D H F+ + KG + N + V
Sbjct: 30 VSIDSRKIG--RGNLFVPFKGENSDGHRFVEDAIE-KGAAAAFWQKDVPNPPLHLPILIV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL +L +A R+ + G+TGS GK+TTK M A L SL V ++ G
Sbjct: 87 E-----DTLTALQELARSYRD-ELKIKVAGITGSNGKTTTKDMTANLL-SLQYKVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ ++ +IAVLEMGMSG+GEI L ++ARP+ ++ N+G+SHL+ LG
Sbjct: 140 NYNNHIGLPLTILALEEDTEIAVLEMGMSGRGEIDFLTKLARPDAVIITNIGESHLQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLV-ANLTVPRGVRKV-FFGWRRGCDVRLVAA 284
S E +A AK EI + + + D+PL+ L G + FG DV +
Sbjct: 200 SREGIAEAKLEIVNGLQENGLVIYYGDEPLLDEKLKSYNGSAALRTFGRTGKNDVYPMDI 259
Query: 285 QVANGG--LGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ + G G+ V KF +P G H +NA AA A FGV ++ ++
Sbjct: 260 KQNDSGSTFGINV------SSGKFYLPVLGTHNVLNALAAMIAAAHFGVPYEKMNEGFAS 313
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
MR ELL +SG KI+NDAYNA+P S AAI+L+ ++ K++++LGDMLELG
Sbjct: 314 LKLTNMRMELLEGQSGEKIINDAYNASPTSMNAAIELIANLPGYKKKILVLGDMLELGPQ 373
Query: 403 ERESHEKILSYCCDACID 420
E + H Y +D
Sbjct: 374 EEDFH-----YSTGKSVD 386
>gi|456012067|gb|EMF45787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Planococcus
halocryophilus Or1]
Length = 456
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 181/325 (55%), Gaps = 23/325 (7%)
Query: 117 SLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL 176
+L MA R+ S +++G+TGS GK++TK ++A L+ V ++ GN+NN++G+ L
Sbjct: 92 ALQEMARAYRD-ELSAMVIGITGSNGKTSTKDLVASVLKPY-FKVQKTPGNFNNQLGLPL 149
Query: 177 SLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKG 236
+++ ++ +AVLEMGMSGKG+I L+ +ARP+ ++ N+G++HL+ LGS E +A AK
Sbjct: 150 TILSLEEDTKVAVLEMGMSGKGQIEFLSELARPDYAIITNIGEAHLQDLGSREAIAEAKF 209
Query: 237 EIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQ 294
EI + + D+PL+ T P+GV FG+ ++ + + G
Sbjct: 210 EITAGLQPHGKLFYDGDEPLLQPFMETFPQGVS---FGFDDNNELTVTDIKATESGSSFM 266
Query: 295 V--VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
V +++ F IP G H N AA VA G+S Q+ SL + + MR ++
Sbjct: 267 VSGIID-----AAFTIPVLGEHQVKNTLAAILVALEAGLSEEQIRKSLKDAALTDMRMQM 321
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
+ S +G +NDAYNA P S AA++ +++ K+ V+LGDMLELG E+ HE +
Sbjct: 322 IQSDNGAIFINDAYNAAPSSMNAALNFIRETTMKDKKWVVLGDMLELGDDEQSYHEALSK 381
Query: 413 YCCDACIDLIG--LVGDRVVVQCKW 435
+ D +L+G L G R+ KW
Sbjct: 382 FISD---NLVGVCLYGPRM----KW 399
>gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Butyrivibrio fibrisolvens 16/4]
Length = 459
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 197/368 (53%), Gaps = 14/368 (3%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K+ F + G D H+FI + + KG + + + N ++ VE +T +L
Sbjct: 43 KDFLFIPMVGARVDGHDFIE-DAFSKGALASLSERKLENVSGPYIIVE-----DTKLALK 96
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
+A R + + ++GV GSVGK++TK M++ L + NV ++ GN+NN +G+ L++
Sbjct: 97 QIATDYR-MQLNIPVIGVIGSVGKTSTKEMLSSVLAT-KFNVLKTEGNFNNEIGLPLTIC 154
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
I +AV+EMG+S GE+ L +A+P+ V+ N+G HLE L S + + +AK E+F
Sbjct: 155 RIKDEHQVAVVEMGISDFGEMHRLGDIAKPDYVVMTNIGQCHLEFLKSRDGILQAKTEVF 214
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK 299
+ +LN DD + N G+ K+F+G G +V + VA G G + V+
Sbjct: 215 EHMPKNGTVILNGDDDKLINADT-LGLNKIFYGL-NGQEVS-ASDIVAEGMTGTRAVINL 271
Query: 300 EREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI 359
E + I PG H +NA AAAAV + G+S ++ L S + R+ ++ R I
Sbjct: 272 FGESFEATIQLPGTHNVMNALAAAAVGKVLGLSNEEIKKGLEKASTIAGRNNVIEVRD-I 330
Query: 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419
I++D YNANP+S +A+I++L G+ + +LGDM ELG ER+ H +I D I
Sbjct: 331 TIIDDCYNANPVSMKASIEVLG--KAPGRTIAVLGDMGELGDDERQLHYEIGQTLEDNHI 388
Query: 420 DLIGLVGD 427
+ VGD
Sbjct: 389 GYVFTVGD 396
>gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus str. JKD6009]
gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus D30]
gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus 930918-3]
gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A9765]
gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus 132]
gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|384862734|ref|YP_005745454.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|384870632|ref|YP_005753346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus T0131]
gi|387143798|ref|YP_005732192.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus TW20]
gi|415688400|ref|ZP_11452115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CGS01]
gi|418277202|ref|ZP_12891816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21178]
gi|418286711|ref|ZP_12899352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21209]
gi|418319266|ref|ZP_12930650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21232]
gi|418580005|ref|ZP_13144095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|418641100|ref|ZP_13203314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-24]
gi|418646535|ref|ZP_13208637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-88]
gi|418658657|ref|ZP_13220370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-111]
gi|418871134|ref|ZP_13425521.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-125]
gi|418904422|ref|ZP_13458459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|418912632|ref|ZP_13466609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG547]
gi|418926495|ref|ZP_13480391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|418929426|ref|ZP_13483310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|418947909|ref|ZP_13500248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-157]
gi|418955775|ref|ZP_13507711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-189]
gi|419774767|ref|ZP_14300724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CO-23]
gi|422743010|ref|ZP_16797006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MRSA177]
gi|422745972|ref|ZP_16799907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MRSA131]
gi|424786071|ref|ZP_18212864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Staphylococcus aureus CN79]
gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus 930918-3]
gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus aureus D30]
gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus TW20]
gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus A9765]
gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-- D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CGS01]
gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MRSA131]
gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus MRSA177]
gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus T0131]
gi|365165924|gb|EHM57672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21209]
gi|365173680|gb|EHM64166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21178]
gi|365241003|gb|EHM81760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21232]
gi|375019863|gb|EHS13413.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-24]
gi|375032692|gb|EHS25918.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-88]
gi|375037788|gb|EHS30796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-111]
gi|375369068|gb|EHS72959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-125]
gi|375370500|gb|EHS74305.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-189]
gi|375374091|gb|EHS77735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-157]
gi|377693344|gb|EHT17716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|377721139|gb|EHT45280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG547]
gi|377736618|gb|EHT60633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|377739858|gb|EHT63858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|377741346|gb|EHT65335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|383971435|gb|EID87510.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus CO-23]
gi|421955597|gb|EKU07933.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Staphylococcus aureus CN79]
Length = 452
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 199/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G+ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLIYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|52143257|ref|YP_083572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus E33L]
gi|51976726|gb|AAU18276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus cereus E33L]
Length = 454
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 181/329 (55%), Gaps = 8/329 (2%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL +L +A + R + ++G+TGS GK+T K +I L S V ++ GN+N+++
Sbjct: 87 DTLFALQQLAQFYRRE-INVKVIGITGSNGKTTVKDIIEGILRST-YRVHKTKGNFNSQI 144
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ L+++ + R + +LEMGMS KG+I L+R+A+P++ V+ +G SHLE+LGS +++A
Sbjct: 145 GLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIA 204
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
+AK EI + + + N D+PL + GV FG + D+ Q+ G+
Sbjct: 205 KAKLEIIDGLRENGLFLYNGDEPLFSRNNKTSGVNCKTFGEKDTNDLFPTNVQLDEYGVH 264
Query: 293 VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
++ K +++ +P G H N AV + V ++ +L + QMR +
Sbjct: 265 FKLNHTK----IQYDVPLHGKHNIFNTIVGIAVGQFYKVPTEKIQEALQQINITQMRFQF 320
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
L ++ G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG H +I
Sbjct: 321 LTAKIGFTIINDAWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGK 380
Query: 413 YCCDACIDLIGLVGD--RVVVQCKWRKWS 439
+ I + G+ ++V + +K+
Sbjct: 381 MLNEESIQYVFTYGELAKIVAEEASKKYD 409
>gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lysinibacillus fusiformis ZC1]
gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lysinibacillus fusiformis ZC1]
Length = 455
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 208/410 (50%), Gaps = 14/410 (3%)
Query: 28 TINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
T+ ++A +N + +G + I DTR + + F G+H + H+F+ + + K
Sbjct: 4 TLKQLAAWLNEDMAAFGDTVVSGISIDTRTI--QQGDLFVPFRGEHTNGHKFVM-QAFEK 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G + + N +G+ + + + +L MA RN +G+TGS GK++
Sbjct: 61 GAGASLWQKDEPNPPEGYPLLFVD---DPELALQEMARAYRNEH-KAKFIGITGSNGKTS 116
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK ++A L V ++ GN+NN++G+ ++++ +D D+AVLEMGMSG GEI L++
Sbjct: 117 TKDILAGTLAPF-FKVQKTIGNFNNQLGLPITILQLDEDTDVAVLEMGMSGFGEIEFLSK 175
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-R 264
+ARP + V+ N+G++H++ LGS +A+AK EI Q + + + D+PL+ L +
Sbjct: 176 LARPHMTVITNIGEAHMQDLGSRAGIAKAKFEIIQGMQNDGLLFYDGDEPLLQELVAKEQ 235
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
++ V FG + L A + G E F I G H N A
Sbjct: 236 HLQSVPFGLE--SNNLLYADNIHANADGSHFTTHGMME-GDFFISVLGRHQVKNTLVAML 292
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
++ G+S Q+ SL + MR + ++ +G +NDAYNA P S +AAI +
Sbjct: 293 ISHKLGLSNEQIRTSLEHVVLTDMRMQQILGTNGALFINDAYNAAPTSVKAAIQFMATST 352
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCK 434
++ ++LGDMLELG ER HE + + + ID + L G R++ K
Sbjct: 353 IRPEKWLVLGDMLELGPNERIFHEGLAEHINEDEIDYVCLFGPRMLYLYK 402
>gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
saccharolyticum WM1]
gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
saccharolyticum WM1]
Length = 456
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 200/380 (52%), Gaps = 14/380 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV-CNNWDKGFVQVE 107
I D+R + N F + G DAH FI + + G V+ ++ + + ++QVE
Sbjct: 29 ISIDSRTM--KGNDLFVPLIGDKVDAHRFIG-QAFDNGAAAVLTSRHDAMDSARPWIQVE 85
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+T +L + Y R+ R LVG+TGSVGK+TT+ M+A AL S +V+++ GN
Sbjct: 86 -----DTKKALQAIGSYYRD-RLILPLVGITGSVGKTTTREMVACAL-SARYSVYKTPGN 138
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
N++VGV +++ I +I V+E+GMS GE+ +AR+A+ ++ V+ N+G +H+E LG+
Sbjct: 139 HNSQVGVPITISEIAPEDEIGVIELGMSEPGELTVIARIAKIQMAVITNIGVTHIEQLGT 198
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+++ R K I G + LN DD + + G R +++G CD R + +
Sbjct: 199 QDNIYREKLTIQDGLTEGGILFLNGDDQFLKSTKAKEGCRTIYYGTGENCDYRALNVHLE 258
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
G +++ V+ + G H +NA + AVA G+ + + L F+ +
Sbjct: 259 EGFPAFTAAFGQKQVPVRLAV--MGSHNVLNAMVSLAVAAECGIPMEKAAKCLEAFTGFR 316
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R ++ + GI +++D YNA+P+S +A +++L I +R+ +L DM ELG H
Sbjct: 317 NRQQIYQT-GGITVIDDTYNASPVSMKAGLEVLGSITKAKRRIAVLADMKELGDNTLSYH 375
Query: 408 EKILSYCCDACIDLIGLVGD 427
+I Y + +D + +G+
Sbjct: 376 YEIGEYIAEHPVDELVTLGE 395
>gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus epidermidis M23864:W1]
gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus epidermidis M23864:W1]
Length = 451
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 203/383 (53%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQ 105
+ D+R A K+ F G++ D H FI L G V G ++ + + +
Sbjct: 29 VTIDSR--AIEKDMLFIPFKGENVDGHRFIDQAL-KDGAVASFSEKGTELSEDVEGPIIW 85
Query: 106 VEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L ++A Y ++ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 86 VE-----DTLQALQDLAKAYLKH--VNPKVIAVTGSNGKTTTKDMIESVL-TTEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + D+PL+ ++ + + + G +
Sbjct: 198 LGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLTPHVKQIQQAKLISVGLGDANSLVCHV 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V G+G + ++ +V+P G+H NA A AV G+ A + ++ +
Sbjct: 258 DDVETEGIGFTINNDE-----SYVLPILGIHNMKNAAIAIAVGHELGLPYATIKENIRHV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E + + ++NDAYNA+P S +AAID L + G++++IL D+LELG+
Sbjct: 313 QLTGMRMERHQTDDNVTVINDAYNASPTSMKAAIDTLS--SMEGRKILILADVLELGTNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
++ HE++ +Y ID++ G
Sbjct: 371 QQMHEEVGTYLDGKSIDILFTYG 393
>gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
olearia TBF 19.5.1]
gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
olearia TBF 19.5.1]
Length = 468
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/419 (33%), Positives = 217/419 (51%), Gaps = 33/419 (7%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
PI ++++I E+ G +L G P + I TDTR + +K F A+ G+ FD H FI
Sbjct: 2 EPI-SLSKIIEATGGTLLS-GTPDVEIFGISTDTRTI--HKGDLFVALEGERFDGHYFID 57
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
E + KG +G I ++ + + ++V +TL +L ++A R F ++ VTG
Sbjct: 58 -EAFKKGAIGAIVSREVESKNI-IIKVR-----DTLKTLGDIAKIYR-EEFDIPVIAVTG 109
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+ L + ++ G++NN VGV L+L+ +DR +AVLEM + G
Sbjct: 110 SNGKTTTKEMLGYIL-TREFKTVKAKGSYNNFVGVPLTLLEMDRHTQLAVLEMETNLLGG 168
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L +A+P + VV N+GD+HL+ L + E V + K E+ + V VLNADDP V
Sbjct: 169 IKRLCEIAKPSVGVVTNIGDTHLQFLKTREGVYQEKSELVESLPEDGVAVLNADDPYVLK 228
Query: 260 LT-VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+ + R R V FG + A+ + G ++ L + I ++ N
Sbjct: 229 MKEISRTKRIVTFGVENKSE--FSASNIRVGDTFLEFTLNNNYRVKLNTISYCNVY---N 283
Query: 319 ACAAAAVA-TLFGVSLAQVGISLSNFSPVQMRSEL----LVSRS-----GIKIVNDAYNA 368
AA AV+ +FG+SL +V L +F +R EL L+ R+ ++I+ND YNA
Sbjct: 284 GLAAIAVSHVVFGLSLEKVIDILKDFKFPSLRMELIEIPLIDRATSNEESVRIINDCYNA 343
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
NP S + A+ + + ++ ILG+MLELG E H +I C D D++ VGD
Sbjct: 344 NPQSMQEALVAVGKMNSYTNKIAILGEMLELGEKAPEFHYQIGKICADCGFDMLITVGD 402
>gi|408418667|ref|YP_006760081.1| bifunctional
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-
alanine ligase MurEF [Desulfobacula toluolica Tol2]
gi|405105880|emb|CCK79377.1| MurEF: fusion protein;
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
6-diaminopimelate ligase and
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase [Desulfobacula toluolica Tol2]
Length = 987
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 194/410 (47%), Gaps = 35/410 (8%)
Query: 24 SPI-WTINEIAESVN-----GKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEF 77
+PI W +++ ++N I K I TD+R +A + F A+ G+ FD H F
Sbjct: 510 TPIAWKTEDLSRALNTDPVFSNIKKNHSFSGISTDSRTIA--QTHIFLALKGETFDGHIF 567
Query: 78 ISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGN-----------VNTLNSLVNMACYAR 126
I L +G G I KGFV T ++L + AR
Sbjct: 568 IK-RLIDQGIKGFITQ-------KGFVDTLDQNTRKKIFQSSLIIFETRDTLTGLGQLAR 619
Query: 127 NSRFSG--VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRA 184
R L+ +TGS GK+TT+ + ++ + + GN+NN +G+ L+L+ + A
Sbjct: 620 YQRLRSNVKLIAITGSSGKTTTRKITQEIFKT-QYHTHATTGNFNNEIGLPLTLLNLSHA 678
Query: 185 VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKL 244
+ A++EMGM+ GEI L+R+A P+I VV N HLE LGS+E+VA AK EIF+ +
Sbjct: 679 HEWAIVEMGMNHPGEISRLSRIALPDIAVVTNTAGVHLEGLGSVENVATAKAEIFEGIRK 738
Query: 245 GDVCVLNADDP----LVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
+L ADDP L A ++ V F + G D +A + Q +
Sbjct: 739 NATAILFADDPRRCILEAKARENNAIKTVLF-FGSGYDADFQSADIKTLAGSTQFTAKFN 797
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK 360
+ + I SP L + N AA A++ G+ + L F+PV R + I
Sbjct: 798 DQKIACSINSPALFMVDNCLAAICAASIAGICRKGIKKGLRAFTPVSGRMNIFRLSDSIH 857
Query: 361 IVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+++D YNANP S AI+ L+ ++ + +LGDMLELG+ H +I
Sbjct: 858 MIDDTYNANPASVTQAINTLQRVSAGKNSIAVLGDMLELGTKSDRLHRQI 907
>gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
limicola DSM 245]
gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
limicola DSM 245]
Length = 473
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 191/375 (50%), Gaps = 19/375 (5%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV-------NTLN 116
F A+ G+ D H +I +++ KG + V W Q +G +T+
Sbjct: 46 FVALEGERTDGHRYID-DVFAKGASLAV---VSEAWYASHGQKDGAAGRRSYLIVDDTVR 101
Query: 117 SLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL 176
L MA R S FS + V GS GK+TTK +IA L +G V S GN NN +GV L
Sbjct: 102 GLQQMAVAYRRS-FSIPVFAVGGSNGKTTTKELIASVL-GVGFKVHMSRGNRNNHLGVPL 159
Query: 177 SLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKG 236
+L+ + R +IAV+EMG++ GE+ LA +A P ++ N+G HLE L L+ VA A+
Sbjct: 160 TLLQMKRDTEIAVVEMGINHPGEMELLASIAMPTHGLLTNIGHEHLEFLHDLQGVAAAET 219
Query: 237 EIFQE-SKLGDVCVLNADDP--LVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV 293
+++ G VC +NADDP L A + R V G G AA G
Sbjct: 220 RLYEYLDGHGGVCFVNADDPWLLSAASKLERAVLYGLNGCGEGVPHAESAALDPFGRPSF 279
Query: 294 QVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL 353
+ L + E V + G H +NA AAAA + G+SL ++ L N P L
Sbjct: 280 MLCLSQACESVTLSLT--GRHNVVNALAAAAAGSYLGLSLREIKEGLENMIPATGWKRLE 337
Query: 354 VSRSG-IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
+G + IVND YNANP S R AIDLL D+ C+G+++ +LGDMLELGS+ HEK
Sbjct: 338 FQEAGGVMIVNDTYNANPDSMRLAIDLLCDLQCSGRKIAVLGDMLELGSSAELEHEKTGR 397
Query: 413 YCCDACIDLIGLVGD 427
Y + IDL+ GD
Sbjct: 398 YIQQSGIDLLFTFGD 412
>gi|408356953|ref|YP_006845484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Amphibacillus xylanus NBRC 15112]
gi|407727724|dbj|BAM47722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Amphibacillus xylanus NBRC 15112]
Length = 449
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 198/377 (52%), Gaps = 42/377 (11%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR +K F + G+ FD H+FI + +G + W + + + +G
Sbjct: 27 VGTDTRQSLEDK--LFIPLVGESFDGHDFIDTAV-KQGAKAAL-------WQESYPRPKG 76
Query: 109 NGN----VNTLNSLVNMACYAR-NSRF-SGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
+ ++L+ + AR RF + +V +TGS GK+TTK ++ ++ + F
Sbjct: 77 IDPSFPLIRVADTLIGLQELARIYLRFVNPKVVAITGSNGKTTTKDLVY----AISRHYF 132
Query: 163 QSY---GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
+S+ GN+NN +G+ L+++ + A ++ +LEMGM+ GEI +L ++A+P+I ++ N+G+
Sbjct: 133 KSHCTKGNFNNHIGLPLTVLAMPEATEVLILEMGMNHFGEIEDLTKIAQPDIAIITNIGE 192
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
SH+E LGS E +A+AK E+ + K + + + D+PL+A P + V G+ R D
Sbjct: 193 SHIEHLGSREGIAKAKLEVTSQFKTKGLLIYDGDEPLLAR-EYPFEAKSV--GFNRSNDY 249
Query: 280 RLVAAQVANGGLGVQVVLEKEREMVK------FVIPSPGLHLAINACAAAAVATLFGVSL 333
+ + +LE E E V F +P G H A NA + V G+++
Sbjct: 250 SISQFK----------LLEHETEFVINDYSHCFTVPLLGKHQAKNATYSFVVGLSLGLTV 299
Query: 334 AQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVIL 393
Q+ L QMR E ++G+ I+NDAYNA+P S + I+ L + ++V++L
Sbjct: 300 EQIQKGLEQIEVTQMRFEKQTGKNGVTIINDAYNASPTSMKVTIETLAQLEGYHEKVLVL 359
Query: 394 GDMLELGSTERESHEKI 410
GDM ELG H+++
Sbjct: 360 GDMFELGENAASYHKQV 376
>gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus torques L2-14]
Length = 461
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 211/414 (50%), Gaps = 37/414 (8%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPN-----KNQWFFAITGQHFDAHEFISPE 81
T++EIA++ G + +G P + + +A + K+ F AI G D H FI P+
Sbjct: 4 MTLSEIADACCG--IYYGDPAFLDREVSSVAIDSRKVVKDTLFVAIKGVRVDGHSFI-PQ 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ G + + Q + D +++V + +L ++A + R S +VG+TGSV
Sbjct: 61 VMEAGALCSLSEQDLGDVDYPYIRVS-----SCTEALKDLAEHYRRS-LDIKVVGITGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK MIA L S NV ++ GN+NN +G+ L++ I ++AVLEMG+S G++
Sbjct: 115 GKTSTKEMIASVL-SEKYNVLKTEGNFNNEIGLPLTVFNIREEHEVAVLEMGISHFGDMK 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA++ARP++ V+ N+G +HLE+LG+ + + + K + + N DD + + T
Sbjct: 174 PLAKIARPDVCVITNIGYAHLENLGTRDGILKEKSSMTDYMNPKGSVIFNGDDDKLKSYT 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPS---------PG 312
G V+FG C + + GL + +FV P+ PG
Sbjct: 234 SRDGRTPVYFGLTSSCPFHV--ENIERKGL--------KGTYAEFVTPTSRFHAHISIPG 283
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H+ NA A AV G+ ++ + P+ R+ L+ ++ I++D YNANP S
Sbjct: 284 DHMIYNALAGVAVGYALGMDNEEIARGIEKLVPIAGRNNLIEAKH-YTIIDDCYNANPAS 342
Query: 373 TRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
++++D+L + ++V ILGDM ELG+ E H ++ +Y D++ +G
Sbjct: 343 MKSSLDVLA--YADTRKVAILGDMGELGADELAMHREVGAYAAFKNTDVLVCIG 394
>gi|418645445|ref|ZP_13207567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-55]
gi|421150951|ref|ZP_15610602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus str. Newbould 305]
gi|443640148|ref|ZP_21124143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21196]
gi|375022964|gb|EHS16430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-55]
gi|394329035|gb|EJE55162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus str. Newbould 305]
gi|443405706|gb|ELS64301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21196]
Length = 452
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 200/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ + +P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLTQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
A5948]
gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
A5948]
Length = 452
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 199/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTVLELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G+ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLIYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|424736337|ref|ZP_18164797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lysinibacillus fusiformis ZB2]
gi|422949940|gb|EKU44313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lysinibacillus fusiformis ZB2]
Length = 455
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 208/410 (50%), Gaps = 14/410 (3%)
Query: 28 TINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
T+ ++A +N + +G + I DTR + + F G+H + H+F+ + + K
Sbjct: 4 TLKQLAAWLNEDMAAFGDTVVSGISIDTRTI--QQGDLFVPFRGEHTNGHKFVM-QAFEK 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G + + N +G+ + + + +L MA RN +G+TGS GK++
Sbjct: 61 GAGASLWQKDEPNPPEGYPLLFVD---DPELALQEMARAYRNEH-KAKFIGITGSNGKTS 116
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK ++A L V ++ GN+NN++G+ ++++ +D D+AVLEMGMSG GEI L++
Sbjct: 117 TKDILAGTLAPF-FKVQKTIGNFNNQLGLPITILQLDEDTDVAVLEMGMSGFGEIEFLSK 175
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-R 264
+ARP + V+ N+G++H++ LGS +A+AK EI Q + + + D+PL+ L +
Sbjct: 176 LARPHMTVITNIGEAHMQDLGSRAGIAKAKFEIIQGMQNDGLLFYDGDEPLLQELVAKEQ 235
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
++ V FG + L A + G E F I G H N A
Sbjct: 236 HLQSVPFGLE--SNNLLYADNIHANADGSHFTTHGMME-GDFFISVLGRHQVKNTLVAML 292
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
++ G+S Q+ SL + MR + ++ +G +NDAYNA P S +AAI +
Sbjct: 293 ISHKLGLSNEQIRTSLEHVVLTDMRMQQVLGTNGALFINDAYNAAPTSVKAAIQFMATST 352
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCK 434
++ ++LGDMLELG ER HE + + + ID + L G R++ K
Sbjct: 353 IRPEKWLVLGDMLELGPNERIFHEGLAEHINEDEIDYVCLFGPRMLYLYK 402
>gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
subfamily [Stigmatella aurantiaca DW4/3-1]
gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Stigmatella aurantiaca DW4/3-1]
Length = 467
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 193/385 (50%), Gaps = 17/385 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN-QVCNNWDKGFVQVE 107
I TDTR L P F A+ G+ FDAH+F++ G V+ Q F E
Sbjct: 30 ISTDTRSLPPGC--LFVALQGERFDAHDFLAQAHAGGAGGAVVRAGQALPAIPGDFPLYE 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+TL +L +A + R RF + V GS GK+TTK M+ L + G ++ GN
Sbjct: 88 ---VPDTLAALGALARFHRE-RFRIPVAAVGGSNGKTTTKEMVGAILATRG-PALKTEGN 142
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN VGV L+L+ ++ + AV+E GM+ GEI L R+ +P+ ++ V HLE LGS
Sbjct: 143 LNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITVVQPEHLEGLGS 202
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV- 286
LE VA A+GE+F+E V V+N DDPL+ +++ FG DVRL +
Sbjct: 203 LEGVAEAEGELFRELSPEAVAVVNLDDPLIPAQAAKGRGKRLTFGRAESADVRLSQVETR 262
Query: 287 ANGGLGVQVVLEKEREMVK--FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
GLG+ V + V+ F+ G H A+NA A A+A G S + L +
Sbjct: 263 GREGLGLTVRYQGRDWPVRLHFI----GEHNALNATGAFALALALGYSPEECVRGLESAR 318
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTE 403
P R ++ G+ +V+D YNANP S AA+D L+ + G R V +LGDMLELG E
Sbjct: 319 PYARRLNVVDGLHGVTVVDDCYNANPASMDAALDTLRTLVTAGGRAVAVLGDMLELGPGE 378
Query: 404 RESHEKILSYCCDACIDLIGLVGDR 428
E H + + L+ G R
Sbjct: 379 LEEHAALGTRAAGRA-QLVAFFGPR 402
>gi|417905574|ref|ZP_12549382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21269]
gi|341843037|gb|EGS84269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21269]
Length = 452
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 200/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV ++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELDLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|417644425|ref|ZP_12294415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus warneri VCU121]
gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU121]
Length = 453
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 198/376 (52%), Gaps = 20/376 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC--NNWDKGFVQV 106
+ D+R A K+ F G++ D H F+ L V N + + V
Sbjct: 29 VTIDSR--AIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKDVSLSENIEGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L ++A A + ++ VTGS GK+TTK MI L + V ++ G
Sbjct: 87 D-----DTLQALQDLAK-AYLKYVNPKVIAVTGSNGKTTTKDMIESVLNT-EFKVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D+ DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LG
Sbjct: 140 NYNNEIGMPLTILDLDKDTDISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCD-VRLVAA 284
S E +A+AK EI K + + D+PL+ ++ + + G +G V V
Sbjct: 200 SREGIAQAKSEITIGLKPNGTFIYDGDEPLLKPHVEQIQQANCISIGLEQGNSLVCSVNE 259
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
++ G+ + +++ E+ P G+H NA A A+ G+S + ++
Sbjct: 260 EIDTEGIAFTINHQQQYEL-----PILGIHNMKNAAIAIAIGQELGLSYETIQHNIKRVK 314
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + + ++NDAYNA+P S +AAID L ++ NG+++++LGD+LELG +
Sbjct: 315 LTGMRMERHETEQQVTVINDAYNASPTSMKAAIDTLSNM--NGRKIIVLGDVLELGDNSQ 372
Query: 405 ESHEKILSYCCDACID 420
HE++ SY + ID
Sbjct: 373 SMHEEVGSYLQNKQID 388
>gi|401679774|ref|ZP_10811698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. ACP1]
gi|400218901|gb|EJO49772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Veillonella sp. ACP1]
Length = 452
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/393 (33%), Positives = 202/393 (51%), Gaps = 30/393 (7%)
Query: 27 WTINEIAESVNGKI-----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ EI ++ +G L++ I TDTR + F A+ G FD H+FI+
Sbjct: 4 FTLQEIIDATSGTCKGDVSLQFKD---ISTDTRTIEAG--YVFVALRGDTFDGHDFINTA 58
Query: 82 LYGKGCVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ KG I G V G + VE NTL + ++A + R R+ +V +T
Sbjct: 59 IE-KGATAAIVEKGRSV-----DGIICVEVE---NTLKAYQDLANFHRR-RYQIPVVAIT 108
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+A L S NV ++ N+NN +G+ +L+ + + V+EMGM G G
Sbjct: 109 GSSGKTTTKEMVAAVL-STEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMGMRGLG 167
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I ELA +A P I ++ NVG SH+E LGS E +A AKGE+ + V +LN DD V
Sbjct: 168 QIEELALIAEPTIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNEDDYFVK 227
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
++ + V +G V + + + G++ + E+ +P G H +
Sbjct: 228 AMSSIAKGKTVTYGIHSNATV--IGSHLHYKKDGIKFTCKCYDEVFDVFLPMIGEHNVYD 285
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A A A + GV +++ LS+F+ MR E +V+ I I+NDAYNANP S +I
Sbjct: 286 ALATIAAGRVLGVKSSKIKKGLSDFTGTPMRQE-IVAFEDIVILNDAYNANPSSMSESIK 344
Query: 379 LLKDIACNGKR-VVILGDMLELGSTERESHEKI 410
L + GKR + +LGDMLELG E H ++
Sbjct: 345 ALGQL--EGKRKIAMLGDMLELGDFTEEGHRQV 375
>gi|445059171|ref|YP_007384575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus warneri SG1]
gi|443425228|gb|AGC90131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus warneri SG1]
Length = 453
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 198/376 (52%), Gaps = 20/376 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC--NNWDKGFVQV 106
+ D+R A K+ F G++ D H F+ L V N + + V
Sbjct: 29 VTIDSR--AIKKDMLFIPFKGENVDGHRFVEQALKDGAGASFYQKDVSLSENIEGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L ++A A + ++ VTGS GK+TTK MI L + V ++ G
Sbjct: 87 D-----DTLQALQDLAK-AYLKYVNPKVIAVTGSNGKTTTKDMIESVLNT-EFKVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D+ DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LG
Sbjct: 140 NYNNEIGMPLTILDLDKDTDISILEMGMSGFHEIELLSTIAEPDIAVITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCD-VRLVAA 284
S E +A+AK EI K + + D+PL+ ++ + + G +G V V
Sbjct: 200 SREGIAQAKSEITIGLKPNGTFIYDGDEPLLKPHVEQIQQANCISIGLEQGNSLVCSVNE 259
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
++ G+ + +++ E+ P G+H NA A A+ G+S + ++
Sbjct: 260 EIDTEGIAFTINHQQQYEL-----PILGIHNMKNAAIAIAIGQELGLSYETIQHNIKRVK 314
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + + ++NDAYNA+P S +AAID L ++ NG+++++LGD+LELG +
Sbjct: 315 LTGMRMERHETEQQVTVINDAYNASPTSMKAAIDTLSNM--NGRKIIVLGDVLELGDNSQ 372
Query: 405 ESHEKILSYCCDACID 420
HE++ SY + ID
Sbjct: 373 SMHEEVGSYLQNKQID 388
>gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerolinea thermophila UNI-1]
gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerolinea thermophila UNI-1]
Length = 477
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 128/405 (31%), Positives = 202/405 (49%), Gaps = 31/405 (7%)
Query: 28 TINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ ++ E++ GK + P D+R + P F A+ G D H+F+
Sbjct: 3 TLTDVLEALTGKHIDMQKPLTFSEAAIDSRQVIPGS--LFVALPGVRTDGHQFVGAAFQN 60
Query: 85 KGCVGVIGNQVCNNW---DKGFVQVEGNGNV---------------NTLNSLVNMACYAR 126
+ ++ + ++ D V E NTL +L +A Y R
Sbjct: 61 GAILALVEKDLPQDFPTLDLRAVSPETPLAFPASWIPGQPLCLRVNNTLEALQQLARYWR 120
Query: 127 NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVD 186
R + ++G+TGSVGKSTTK +IA L S ++ GN NN +G+ L+L+ + + +
Sbjct: 121 R-RLNIRVIGITGSVGKSTTKELIAEVL-SQRYRTLKNPGNLNNEIGLPLTLLRLGKGHE 178
Query: 187 IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
AVLEMG GEI L +A+P++ V+ N+G H E GS E +AR K E+ Q +G
Sbjct: 179 RAVLEMGFYVPGEIALLCDIAQPQVGVITNIGTVHAERAGSQEAIARGKSELVQALPVGG 238
Query: 247 VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVK 305
+LN DDP V + + +++G + L A ++ GL G++ L RE
Sbjct: 239 YAILNHDDPWVRWMADKTQAQILYYGLT--PEAHLWADEIETMGLEGIRFRLHYRRESFS 296
Query: 306 FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365
+P G H A A AV + G++ ++ L SP Q+R + S SG I++D
Sbjct: 297 VRVPLIGHHSVQTALRATAVGIVEGLTWGEIIHGLQR-SPTQLRLVAVRSSSGALILDDT 355
Query: 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
YNA+P ST A++ +L ++ G+R+ +LGDMLELG E+ HEK+
Sbjct: 356 YNASPESTLASLQILHEM--KGRRIAVLGDMLELGPYEQSGHEKV 398
>gi|423716532|ref|ZP_17690722.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella tamiae Th307]
gi|395428606|gb|EJF94681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella tamiae Th307]
Length = 481
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 214/421 (50%), Gaps = 26/421 (6%)
Query: 24 SPIWTINEIAESVNGKI---LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
S +WT +E+A+++ G++ L GI D+R K FF I G FD H+F
Sbjct: 2 SALWTSSELADALKGEVTGKLSEEFHGI-SIDSR--TAQKGDIFFCIKGDQFDGHDFAQK 58
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGN--GNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ V + V N K + + L L N+A AR R ++ +T
Sbjct: 59 AIENGASVLI----VHKNRTKSLYHLATPMIAVDDVLQGLQNLAKAAR-LRSKAKIIAIT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK ++ +L ++G V + ++NN GV L+L + + D V E+GM+
Sbjct: 114 GSVGKTTTKELLRQSLATVG-KVHANPLSFNNHWGVPLTLARMPKETDYGVFEIGMNHAN 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L ++ RP++ +V + HL SLED+A AK EIF+ + LNADD +
Sbjct: 173 EIRPLVKLVRPDVAIVTQIAAVHLGFFSSLEDIADAKAEIFEGMNDNGIVFLNADDAFFS 232
Query: 259 NL---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L + +GV+ ++ FG D RL + + +++++ E MVK + +PG H
Sbjct: 233 YLRDKALLQGVQTIWCFGEAAFADYRLEKLHMMSDSSVMKILIRGEEAMVK--VGAPGRH 290
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSG-IKIVNDAYNANP 370
+ N A G +LA++ ++L++F R L++ + G +++++YNANP
Sbjct: 291 IVQNCLAVIGACDYVGANLAKIFMALADFKAENGRGARYRLMLPKGGYFTLIDESYNANP 350
Query: 371 ISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
S RAA++LLK G+ + +LGDMLELG+ + H ++L A ++ I L+G
Sbjct: 351 ASMRAALELLKATPKTERGRHIAVLGDMLELGAHSHKLHLELLEPIEAAEVNPIYLIGHE 410
Query: 429 V 429
+
Sbjct: 411 M 411
>gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Staphylococcus
capitis SK14]
gi|417906614|ref|ZP_12550395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus capitis VCU116]
gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-MurNAc-pentapeptide synthetase)
(D-alanyl-D-alanine-adding enzyme) [Staphylococcus
capitis SK14]
gi|341597616|gb|EGS40162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus capitis VCU116]
Length = 451
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 203/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGC-VGVIGNQVCNNWDKGFVQV 106
+ D+R + K+ F G++ D H F++ L G G G ++ + + + V
Sbjct: 29 VTIDSRKIE--KDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELSEDIEGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L ++A Y + + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLKALQDLAKAYLK--YVNPKVIAVTGSNGKTTTKDMIESVL-TTEFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ +L R + G +
Sbjct: 199 GSREGIAKAKSEITIGLKENGTFIYDGDEPLLKPHLEQLNKARLISVGLGNSNTLVCHVD 258
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ G+ + ++E F +P G H NA A A+ G+S + ++++
Sbjct: 259 DIETEGIAFTI---NDKE--SFTLPILGTHNMKNATIAIAIGHELGLSYETIKDNINHVK 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + + + ++NDAYNA+P S +AAID L + G++++IL D+LELG +
Sbjct: 314 LTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDTLS--SMEGRKILILADVLELGENSQ 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
HE++ +Y + ID++ GD
Sbjct: 372 SMHEEVGAYLNNKAIDVLYTYGDE 395
>gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor obsidiansis OB47]
gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor obsidiansis OB47]
Length = 448
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 206/400 (51%), Gaps = 22/400 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA+++NG+ LK I+ + + + N KN F + G FD H+F+ L
Sbjct: 3 LW-LSEIAKALNGE-LKNFSDDILVSSFSLNSKNISKNTLFIPLKGTRFDGHDFVEEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I ++ N +V+V+ +TL +L +A Y R+ ++GVTGSVGK
Sbjct: 61 N-GAISFISHKEIENVRVPYVKVK-----DTLAALQGLASYVRDKLKGLTVIGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L S F++ GN NN +G+ S++ + +AV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-SCKYKTFKNQGNLNNHIGLPFSILNMPEDTQVAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A+P I V+ N+G +H+E+L S ++ AK EI + ++N D+ ++ NL
Sbjct: 174 SQIAKPNIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDIL-NLHKK 232
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
RKV G + R Q G +V + I S H N+ A
Sbjct: 233 ELKRKVVTIGIENESNFRAQNVQRHQNGFSFEV------GGYTYFIKSFNFHDIYNSLFA 286
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
A+ T+ G+ V ++ ++ R E ++ + I IV+D YNA+ S +AID + +
Sbjct: 287 IAIGTILGIDRQLVKEAIRQKERLKRRFE-VIKKGSITIVDDTYNASTHSMLSAIDSICE 345
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+GK++++LGDMLELG E H K+ Y ID++
Sbjct: 346 F--DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVV 383
>gi|406837962|ref|ZP_11097556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus vini DSM 20605]
Length = 455
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 190/381 (49%), Gaps = 12/381 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L P F + G+ D H F+ + G V + F +E
Sbjct: 28 VSFDTRTLRPGA--LFIPLIGEK-DGHHFVEQAI-ANGAVATLWQADHQKTTFSFPMLEV 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N NTL +L +A Y N + + ++ VTGS GK+TTK MIA A+ + NV ++ N+
Sbjct: 84 N---NTLAALQKLAKYYLN-KINPRVIAVTGSNGKTTTKDMIA-AILATSFNVKKTQENF 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN++GV ++++ I+ ++ V+EMGM GE+ L+R+ P+I V+ +G++H+E G+
Sbjct: 139 NNQIGVPMTILNIEPNTEVLVVEMGMDHFGELDHLSRLVSPDIAVITMIGEAHIEFFGTR 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ +A AK EI K V V N D+PL+ T FG + D R +
Sbjct: 199 DKIADAKMEITHGLKEDGVLVYNGDEPLLRERTSRLLQETRTFGGAQDNDYRAINVVSNE 258
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G +V E + F +P G + NA AA AV F + + ++ +LSNFS
Sbjct: 259 KQTGFRVTKWPE---LNFTVPMIGSYNVKNALAALAVGDYFQIPVKKMAAALSNFSVTAN 315
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R++ + G I++D YN+NP + + + + GKRVV+LGDMLELGS + H
Sbjct: 316 RTQWIAGSQGEMILSDVYNSNPTAAKLVLRAFSQVPTAGKRVVVLGDMLELGSASPQLHA 375
Query: 409 KILSYCCDACIDLIGLVGDRV 429
+ I + L G +V
Sbjct: 376 SLAQAIDPQKIAEVFLCGTQV 396
>gi|228985293|ref|ZP_04145456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228774448|gb|EEM22851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 460
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 191/359 (53%), Gaps = 18/359 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D HE++ E G V + + KG FV +TL +L +A + R
Sbjct: 57 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGIPIIFVD-------DTLFALQQLAQFYR-R 107
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ ++R +
Sbjct: 108 EINVKVIGITGSNGKTTVKDIIGSILSST-YKVHKTKGNFNSQIGLPLTILEMERNTEFL 166
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+R+A+P++ V+ +G SHLE+LGS +++A+AK EI + +
Sbjct: 167 ILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDWLRENGLF 226
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+PL++ V FG + D+ Q+ G+ ++ K +++ +
Sbjct: 227 LYNGDEPLLSRNNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHSK----IQYDV 282
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H N AV + V + ++ +L + +MR + L +++G I+NDA+NA
Sbjct: 283 PLHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITKMRFQFLTAKTGFTIINDAWNA 342
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+P S +AAI+ L+ + K+++++GDMLELG H +I + I + G+
Sbjct: 343 SPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYGE 401
>gi|387781061|ref|YP_005755859.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus LGA251]
gi|344178163|emb|CCC88649.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus LGA251]
Length = 452
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 197/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPVIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLR--HVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV ++ + +L N S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELDLTYNTIYQNLKNVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
gi|156863144|gb|EDO56575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. L2-50]
Length = 501
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 123/406 (30%), Positives = 201/406 (49%), Gaps = 16/406 (3%)
Query: 28 TINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ +I + G +L + P +C D+R F + G D H FI P +
Sbjct: 51 TVKDIVNATGGFLLCGDEDTPITGLCIDSR--KAQAGDLFIPLLGNKVDGHRFIEPAMER 108
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ +K F++V+ +T+ +L + R R+ +GVTGSVGK+
Sbjct: 109 ASATLTSEHDNVVISEKPFIRVD-----DTMKALQAIGKDIR-GRYDIPYIGVTGSVGKT 162
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TT+ MIA A+ + G + FQ+ GN N+++GV ++L + D AV+EMG+S G++ L+
Sbjct: 163 TTREMIAAAVGT-GRHCFQTNGNENSQIGVPMTLSRMTDGYDAAVIEMGISEPGQMEILS 221
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+ RP I VV +G +H+E + + E++ K I K + +LN DDPL+ +
Sbjct: 222 DIVRPSICVVTMIGVAHIEFMKTQENIRDEKLSIVNHMKENGLLLLNGDDPLLREIKDDM 281
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
+ + FG CD + + V G G++ E V V+ G H NA A A
Sbjct: 282 SCQTLTFGIDEVCDFQ--GSDVQCGEQGMEFDCTHNGETVHVVMDVLGKHNVRNALAGIA 339
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
VA G+ +A + +F R ++ + I++D YNA+P S +A+ID+L D+
Sbjct: 340 VAYQLGIPMATAAKAFEHFEG--QRQRIIRMENRYTILDDTYNASPDSMKASIDVLCDLD 397
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
C GK+ +L DM ELG H +I Y D ID + +VG++ +
Sbjct: 398 CKGKKYAVLADMNELGDDSVSYHRQIGEYLRDKKIDEVIVVGEKAL 443
>gi|414154499|ref|ZP_11410817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411453896|emb|CCO08721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 459
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 218/408 (53%), Gaps = 24/408 (5%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
++++EIA + G +L G P +C D+R + P F A+ GQ D H+F + +
Sbjct: 4 YSVDEIAR-ITGGVLLQGNPATPVNGVCIDSRQVQPGG--IFAALPGQQVDGHDFAAQAV 60
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G ++ V V V+ +T +L +A R +R + +V VTGS G
Sbjct: 61 AGGAAALLVSRPVTVAAAVPVVLVK-----DTRQALQRLAADNR-ARLTVPVVAVTGSNG 114
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK MIA L++ N ++ GN+NN +G+ L+L+ + AV+EMGM G GEI
Sbjct: 115 KTTTKDMIASVLQTR-YNTLKTQGNYNNELGLPLTLLNLTEQHQAAVVEMGMRGPGEIDF 173
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA++A+P V+ N+G++HLE LGS++++A AK E+ + + G VLN D P + L
Sbjct: 174 LAKLAKPTGAVITNIGEAHLERLGSVKNIALAKTEVLEHIEPGGFAVLNGDSPWLKEL-A 232
Query: 263 PRGVRKVFFGWRRG-CDVRLVAAQVANGGLGV--QVVLEKEREMVKFVIPSPGLHLAINA 319
R KV+F G D+R + GLGV QV+ R + +P PG H +N+
Sbjct: 233 DRCRGKVWFYSLTGRGDIR--GYNIEPDGLGVKYQVIYPGGRG--EIYLPVPGSHNVLNS 288
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA V G++ A + L + MR E++ + GI I+ND YNANP S +AA+ +
Sbjct: 289 LAAVGVGLQLGLTFADIACGLQQAALSGMRLEIIKCQ-GITIINDTYNANPASVKAALKV 347
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
L++ A G+++ +LG+M ELG+ + H ++ +D + VG
Sbjct: 348 LQETAT-GRKIAVLGNMYELGALSQTGHREVGEAAAGVPVDYLVTVGQ 394
>gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium ljungdahlii DSM 13528]
gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium ljungdahlii DSM 13528]
Length = 464
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 124/422 (29%), Positives = 219/422 (51%), Gaps = 47/422 (11%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEF------ 77
+ +EI +V+G+++ K+ + TDTR + + F A+ G+ F+ +++
Sbjct: 4 MSFDEIVNAVSGQVIISGKYSGYRNVSTDTRKIE--EKDIFIALKGERFNGNKYAAVASD 61
Query: 78 ------ISPELYGKG-----CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR 126
I E+Y K C VI QV+ +GN +L+++A + +
Sbjct: 62 KGASICIVDEVYFKKSEINECTSVI-------------QVK-DGN----QALLDLAEFYK 103
Query: 127 NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVD 186
S+ S ++G+TGS GK+TTK +I L S VF++ GN NN++G+ + ++ + D
Sbjct: 104 -SKLSVKVIGITGSAGKTTTKDLITSVL-SAKFKVFKTEGNLNNQIGLPHMIFRLNNSYD 161
Query: 187 IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246
+AVLEMGM+ +GEI +A+ ARP+I V+ NV +H+ +LG+ E++ AK EI +
Sbjct: 162 VAVLEMGMNNRGEIHSMAKAARPDIAVITNVLRAHIGNLGTRENILAAKLEITDFFSKDN 221
Query: 247 VCVLNADDPLVANLTVPR-GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVK 305
V+N+D+ +++NL R +R+V G D+ +V + + + +
Sbjct: 222 TLVINSDNDMLSNLKEDRFNIRRV--GLEENSDISAYDIEVKEDFISFNICENNVKMEER 279
Query: 306 FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365
F + PG + +N+ A A + ++ ++ L N MR E+ + ++ND+
Sbjct: 280 FKVNVPGKYNVLNSLLAVACGRILNMTYGEIREGLKNIETTAMRMEICKGKK-FNVINDS 338
Query: 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425
YNANP S +AAID+LK+ +RV +LG M ELG HE++ Y + ID++ +
Sbjct: 339 YNANPESMKAAIDVLKNFKSK-RRVAVLGTMGELGDESCRMHEEVGKYAGENGIDILIAL 397
Query: 426 GD 427
G+
Sbjct: 398 GE 399
>gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
20731]
gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
20731]
Length = 460
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 191/372 (51%), Gaps = 20/372 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P F A+ G+ FD H F++ L V+ + +G
Sbjct: 26 VVTDSRAIVPG--CLFVALKGEKFDGHRFVAQALEDGARAAVV-----SEVPEGVAADRC 78
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + +A R + ++ +TGS GK++TK IA L V ++ N+
Sbjct: 79 VVVPDTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKDCIAAVLGER-YRVIKTQANF 137
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ +L+ I ++AV+EMGM G G+I + +A P+ V+ NVGD+HLE LGSL
Sbjct: 138 NNEIGLPKTLLTIREDTEMAVVEMGMRGLGQIRAMKHIAYPDAAVITNVGDTHLELLGSL 197
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E++A+AK EI ++ + LN DDP V+ + V +G DV+ A +++
Sbjct: 198 ENIAKAKSEILEDFTPKNHAFLNGDDPRVSVMETGAAVHT--YGIDSDADVK--AVEISA 253
Query: 289 GGLGVQVVLEKER---EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
GL V + R K +P G H +NA AA AV ++GV A + L N
Sbjct: 254 DGLRT-VFTYRSRITGATQKVQLPLIGRHNVMNALAAVAVGEVYGVPDAAIARGLENLKM 312
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN---GKRVVILGDMLELGST 402
MR E+L + ++NDAYNA+P S AA+ L D+ + G+ + +L DMLELG+
Sbjct: 313 TGMRQEIL-HFGPVTVINDAYNASPASMEAALRTLGDVVKSQGKGRAIAVLADMLELGAH 371
Query: 403 ERESHEKILSYC 414
+ H ++ ++C
Sbjct: 372 SQSGHAQVGTWC 383
>gi|402495051|ref|ZP_10841785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Aquimarina
agarilytica ZC1]
Length = 427
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 197/384 (51%), Gaps = 27/384 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR L N NQ FFA+ G FD +++ + C +I D + +
Sbjct: 16 VCTDTRSL--NNNQLFFALKGDSFDGNQYAVKAIEDGACFAIID-------DPKIIHSKA 66
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L +L +A + RN S ++ +TGS GK+TTK +I +++ N +YGN
Sbjct: 67 ILVENVLQTLQELANFHRN-YLSIPIIALTGSNGKTTTKELIHAVIKT-KFNCTATYGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ +D + +I V+EMG + EI +L ++A+P + N+G +HLE GS
Sbjct: 125 NNHIGVPLTLLKMDTSTEIGVVEMGANHLYEIDQLCKVAQPNFGYITNIGKAHLEGFGSE 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVFFGWRRGCD--VRLVAAQ 285
E++ K E+++ + N +D ++ + + ++F D ++ + AQ
Sbjct: 185 ENILLGKTELYRHLDTNKGIIFGNIEDAILTEKS--KKSNAIYFSNTSKSDYQIKFIEAQ 242
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
VL KE E+ +I G + N A+ A+ FG+ + + ++ + P
Sbjct: 243 ------PFVKVLVKETEINSNLI---GAYNYTNIAASIAIGLYFGIDITAIKQAIEKYIP 293
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAI-DLLKDIACNGKRVVILGDMLELGSTER 404
RS+L+ +++ +++ DAYNANP S AAI + D +VVILGDM ELG
Sbjct: 294 ANNRSQLIKTKTN-QLILDAYNANPSSMTAAIKNFENDHTKKDNKVVILGDMFELGQYSE 352
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
+ H+ I+S+ ++ I+ I L GD
Sbjct: 353 KEHQSIVSHLENSKINQIFLAGDH 376
>gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
spumigena CCY9414]
gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
spumigena CCY9414]
Length = 450
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 129/373 (34%), Positives = 200/373 (53%), Gaps = 44/373 (11%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + P + F A+ G++FD H+F+S + ++ + N D +QV
Sbjct: 33 IQTDTRRIKPG--EVFLALRGENFDGHDFVSHAIAQGAIAAIVDSD-YENADVAVLQVR- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R+ R + ++GVTGSVGK+TTK +IA L + G V +++GN+
Sbjct: 89 ----DTLQAYQQLGRWWRD-RLNIPVIGVTGSVGKTTTKELIAAVLATEG-RVHKTFGNF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ +D D AV+EM M G+G+I EL ++ARP I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELDTEHDYAVVEMAMRGEGQIRELTQIARPNIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E +ARAK E+ E V +LN D+PL+ ++V+ G +V
Sbjct: 203 EAIARAKCELLAEMPEDSVAILNHDNPLLMAT-----AQQVWSG------------EVVT 245
Query: 289 GGLG---VQVVLEKEREM----VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
GL +Q VL + + ++ +P PG H A N AA AVA + G+ + +L
Sbjct: 246 YGLSGGDIQGVLTDNQTIKVGEMRLPLPLPGRHNASNFLAALAVAQVLGIDWS----TLQ 301
Query: 342 NFSPVQM---RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDML 397
N V M RS+ I ++++ YNA P + AA+ LL D GKR + +LG M
Sbjct: 302 NGVKVNMPTGRSQRFTLPHDIILLDETYNAAPEAMTAALQLLAD--TPGKRKIAVLGAMK 359
Query: 398 ELGSTERESHEKI 410
ELG + H+++
Sbjct: 360 ELGERSLQLHQRV 372
>gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate/d-alanyl-d-alanyl ligase
[Caldicellulosiruptor hydrothermalis 108]
gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor hydrothermalis 108]
Length = 448
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 209/400 (52%), Gaps = 22/400 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA+++NG++ + ++ + I + N K+ F + G FD H+F+ L
Sbjct: 3 LW-LSEIAKAINGELRNFSSD-VLVKNFSINSKNIGKDTLFIPLKGSRFDGHDFVKEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I + + +++V+ ++L +L ++ACYAR +VGVTGSVGK
Sbjct: 61 N-GAISFISQKDFEDIKVPYIKVQ-----DSLLALQSLACYARRKLNDLKVVGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L S F++ GN+NN +G+ +S++ + +AV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-SRKYKAFKNQGNFNNHIGLPISILNMPDDTQVAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A+P+I ++ N+G +H+E+L S ++ AK EI + ++N+D+ ++ NL
Sbjct: 174 SQIAKPDIGIITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINSDNDIL-NLHKK 232
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
RKV G + R Q G +V + I S H N+ A
Sbjct: 233 ELKRKVVTIGIENESNFRAQNVQRHQNGFSFEV------GGYTYFIESFNFHDIYNSLFA 286
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AV T+ V V ++ ++ R E ++ + I +V+D YNA+ S +AID + +
Sbjct: 287 IAVGTILEVDRQLVKEAIRQKERLKRRFE-VIKKGSITVVDDTYNASTHSMLSAIDSICE 345
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
GK++++LGDMLELG E H K+ Y ID++
Sbjct: 346 FE--GKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVV 383
>gi|415886179|ref|ZP_11548002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus methanolicus MGA3]
gi|387588832|gb|EIJ81153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus methanolicus MGA3]
Length = 461
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 120/366 (32%), Positives = 192/366 (52%), Gaps = 12/366 (3%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVN 120
F G++ D H F+ + KG + + N D + VE +TL +L
Sbjct: 42 LFIPFKGENTDGHRFVE-DAIKKGAAAALWQKDVPNPPLDLPVLIVE-----DTLRALQE 95
Query: 121 MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG 180
+A RN + +VG+TGS GK+TTK M A L S+ V ++ GN+NN +G+ L+++
Sbjct: 96 LARSYRN-ELNIKIVGITGSNGKTTTKDMTANLL-SIKYKVQKTEGNFNNHIGLPLTVLS 153
Query: 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240
+ ++AVLEMGMSG+GEI L ++ARP ++ N+G+SHL LGS E +A AK EI +
Sbjct: 154 LKPDTEMAVLEMGMSGRGEIEFLTKLARPNAVIITNIGESHLLDLGSREAIADAKLEIIK 213
Query: 241 ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
+ G + V + D+PL+ V + R L ++ G + +
Sbjct: 214 GLEDGGLIVYHGDEPLLKERLENFDGNAVLKTFGRSERNNLYPIEIQQSDKGNEFKINAS 273
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK 360
E+ F +P G H +NA AA A FG+ ++ SN MR E++ ++G K
Sbjct: 274 PEV--FSLPVLGTHNVLNALAAMLAAEYFGIPFEKMNEGFSNLKLTNMRMEIVEGKNGEK 331
Query: 361 IVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
I+NDAYNA+P S AA++L+ +++ ++++LGDMLELG E + H + + +D
Sbjct: 332 IINDAYNASPTSMNAAVELVSNLSGYKNKILVLGDMLELGPQEEQFHYNVGANLDPEKVD 391
Query: 421 LIGLVG 426
+ G
Sbjct: 392 FVFTYG 397
>gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1271]
gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus AH1271]
Length = 460
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 213/421 (50%), Gaps = 27/421 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+N++ E V+G+ L+ I IC D++ + K F I D H+++ E
Sbjct: 12 LNKLEEVVDGEGLQESFHNIEIQGICIDSKKIK--KGNLFVPIIRVK-DGHDYVK-EAMD 67
Query: 85 KGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G V + + KG FV +TL +L +A + R V +G+TGS
Sbjct: 68 NGAVASLWKKSYGTPPKGIPIIFVD-------DTLFALQQLAQFYRKELNVNV-IGITGS 119
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+T K +I L S V ++ GN+N+++G+ L+++ + R + +LEMGMS KG+I
Sbjct: 120 NGKTTVKDIINTIL-STTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQI 178
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++A+P++ ++ +G SHLE+LGS E++A+AK EI K +C+ N D+PL+
Sbjct: 179 RNLSKIAQPDVAIITMIGQSHLETLGSREEIAKAKLEIIDGLKDEGLCLYNGDEPLLLKN 238
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ FG + D Q+ G+ ++ +++ +P G H +NA
Sbjct: 239 KNLSSINCKAFGEKYTNDFFPTNVQLDEYGIHFKL----NDSNIQYDVPLHGKHNILNAI 294
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
A+ + V + ++ +L + MR + L +++G I+NDA+NA+P S +AAI+
Sbjct: 295 VGIAIGQYYNVPVEKIQKALRQVNITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETF 354
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD--RVVVQCKWRKW 438
+ + K+++++GDMLELG H +I I + G+ +V + +K+
Sbjct: 355 QTLNAYKKKIIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYGELAEIVAEEARKKY 414
Query: 439 S 439
Sbjct: 415 D 415
>gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Azorhizobium caulinodans ORS 571]
gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium
caulinodans ORS 571]
Length = 476
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 190/379 (50%), Gaps = 22/379 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIG-NQVCNNWDKGFVQVE 107
I DTR L P FFAITG++ D H +++ L + V+ ++V D V V
Sbjct: 30 ISIDTRTLEPG--DAFFAITGENSDGHAYVAKALENGASLAVVAADRVQGLPDGPLVVVP 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L +L ++ AR +R +V VTGSVGK+TTK + +AL + G S +
Sbjct: 88 -----DVLGALTDLGKAAR-ARSEARIVAVTGSVGKTTTKEALRIALSADG-ETHASAAS 140
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN GV LSL R+ V E+GM+ GEI L RM RP + V+ V H+
Sbjct: 141 YNNHWGVPLSLARFPRSARYGVFEVGMNHPGEITPLVRMVRPHVAVITTVEAVHIAQFSG 200
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV---PRGVRKVF-FGWRRGCDVRLVA 283
+E++A AK EIF + G VLN D+PL L +GV+ + FG C+VRL
Sbjct: 201 IEEIADAKAEIFDGLEPGGTAVLNRDNPLFDRLVASARAKGVKNIVSFGADPACEVRL-- 258
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V VV + V F + PG H+ NA A A L G LA ++L+
Sbjct: 259 KDVVLHPACSTVVADVLGTPVTFKLGMPGRHIVQNALAVLAAVRLLGGDLALAAVALARL 318
Query: 344 SPVQMRS---ELLVSRSGIKIVNDAYNANPISTRAAIDLLK--DIACNGKRVVILGDMLE 398
P R L VS +++++YNANP S RAAID+L + G+R+ +LGDMLE
Sbjct: 319 RPPPGRGVPVSLSVSGGTATLLDESYNANPASMRAAIDVLSRTPVGPRGRRIAVLGDMLE 378
Query: 399 LGSTERESHEKILSYCCDA 417
LG TE H + L+ +A
Sbjct: 379 LG-TEGAQHHRELAEALEA 396
>gi|427402715|ref|ZP_18893712.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Massilia
timonae CCUG 45783]
gi|425718521|gb|EKU81468.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Massilia
timonae CCUG 45783]
Length = 456
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 214/418 (51%), Gaps = 22/418 (5%)
Query: 28 TINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
++ ++A+++ G L GP + TD+R + F A+ G+ FDAH+F+ ++ G
Sbjct: 4 SLQQLADAIPGARL-VGPDASFEGVSTDSRKV--GAGALFVALVGETFDAHDFLD-QVAG 59
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+G V+ +++ W + V +TL +L +A +A ++F ++GVTGS GK+
Sbjct: 60 QGVAAVVVSRLPQGWTLPAIVVP-----DTLVALGRIA-HAWRAQFDIPVIGVTGSNGKT 113
Query: 145 TTKSMIALALES-LGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
T K MIA L + +G + + GN NN +GV L+L +D + AV+E+GM+ GEI
Sbjct: 114 TVKEMIASILAAAVGEDARLATQGNLNNEIGVPLTLFRLDASHRAAVVELGMNHPGEIGR 173
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L+ +A P + +V N H E + ++E VAR G + Q V V DD
Sbjct: 174 LSAIATPTVGLVNNAQREHQEFMHTVEAVARENGSVLQALAADGVAVFPGDDTYTDLWRG 233
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
G + + FG CDVR A A G G ++ + + + G H NA AA
Sbjct: 234 LAGCKALTFGLSEACDVR---ATHAAGDFGSELHVLAPGAQFGIKLAAAGEHNVRNALAA 290
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
A A GV A + L F+PV R + + +G +++D YNANP S RAAID+L
Sbjct: 291 VACALGAGVDQAAIVRGLEAFAPVGGRLQRKQAGNGATVIDDTYNANPDSMRAAIDVLA- 349
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD--RVVVQCKWRKW 438
AC R++++GDM E+G+ +E HE+I +Y I+ + G+ R +V R +
Sbjct: 350 -ACPAPRILVVGDMGEVGAQGKEFHEEIGAYAASRGIETVLATGELARHLVASGARHY 406
>gi|399888850|ref|ZP_10774727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium arbusti SL206]
Length = 462
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 216/410 (52%), Gaps = 21/410 (5%)
Query: 27 WTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+++ I +++ GK++ G I DTR + + F AI G++F+A+ F + E
Sbjct: 4 MSLSSIVKAIEGKLIVKGSKENFNSISIDTRKIE--QGSIFIAIKGENFNANNF-TVEAS 60
Query: 84 GKGCVGVIGNQVCN-----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
KG I +++ + D V VE NT +L+ +A + R S + +VG+T
Sbjct: 61 RKGAALCIVDEIKFKDKELSKDTSIVIVE-----NTKKALLKLAEFYR-STLNIKIVGIT 114
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK M A+ S VF++ GN+NN +G+ L + +D DIAVLEMGMS
Sbjct: 115 GSTGKTSTKDM-TYAILSEKYKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGMSNFF 173
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +A+ A+P+I ++ N+G SH+E+L + E++ +AK EI K +LN D+ +++
Sbjct: 174 EIHNMAKSAKPDIAIITNIGISHIENLKTRENILKAKLEITDYFKDSSTLILNVDNDMLS 233
Query: 259 NLTVP-RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
++ + + + G D+R + + + + + F I PG H
Sbjct: 234 TVSKEDKNYKLIRTGIESNSDIRAKNLILKETKIIFDIFKDHKPVFKDFKINLPGKHNIS 293
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
NA A + LFG++ ++ + + MR +++ + I++D YNA+P S AAI
Sbjct: 294 NALLAISCGELFGLTYHEMNSGIDKLNMTSMRLDIVKGKK-YTIIDDCYNASPDSMIAAI 352
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
D+L +I N +++ + G M ELG + H++I +Y + +D + ++G+
Sbjct: 353 DVLNNIKGN-RKIAVFGTMKELGDKAYDYHKEIGAYAKNNSVDFLIVLGE 401
>gi|418326941|ref|ZP_12938116.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU071]
gi|365224047|gb|EHM65317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU071]
Length = 451
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 200/383 (52%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKYSEGNKGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + + D+PL+ ++ + + + G
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVNQVKNAKLISIGLNSDSTYTCHM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V N G+ + +KE + +P G H NA A A+ G++ + ++ N
Sbjct: 258 NDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E S + + ++NDAYNA+P S +AAID L G++++IL D+LELG
Sbjct: 313 QLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGRKILILADVLELGPNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ H+++ Y D ID++ G
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFG 393
>gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
sp. Y-400-fl]
gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
sp. Y-400-fl]
Length = 497
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 202/387 (52%), Gaps = 31/387 (8%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ----VCNNWDK- 101
G + TD+R + P F A+TG+ D H F++ + ++ + + +N D
Sbjct: 32 GPVVTDSREVTPGS--LFVALTGERTDGHRFLADVVTRGAAAALVSPEKLTALASNLDTV 89
Query: 102 -------GFVQVEGNGNV-----------NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
Q + V + L +L +A Y R F+ ++G+TGSVGK
Sbjct: 90 ARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQM-FTPTVIGITGSVGK 148
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK ++A A+ S + +S ++N+ V + +L+G+ +AVLEMGM GEI L
Sbjct: 149 TSTKEVVA-AVCSRRLRTLKSQRSFNSEVTLPATLLGLTADHQVAVLEMGMWAAGEIRFL 207
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
A +ARP+I +V NVG SHLE LGS+E +A AK E+ + C+LNADD VA +
Sbjct: 208 ATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELPESLPADGWCILNADDHRVAAMASR 267
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
R + +G+ DVRL+ V++G G+++ + E + + P G H A A AA
Sbjct: 268 TAARVLTYGYAPNADVRLLDV-VSHGLYGIELTVGYEGQSHRLTTPLIGRHHAYTALAAI 326
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
A + G+ + L Q+R ++ + G I++D YNA P+ST AA+ +L +
Sbjct: 327 AAGLVLGLDWDAIAEGLREPGE-QLRLRIVPGQHGTTIIDDTYNAAPLSTIAALQVLAE- 384
Query: 384 ACNGKRVVILGDMLELGSTERESHEKI 410
G+R+ +LG+MLELG+ E H+++
Sbjct: 385 -TKGRRIAVLGEMLELGAASVEGHQQV 410
>gi|339449341|ref|ZP_08652897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Lactobacillus fructivorans KCTC 3543]
Length = 458
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 205/400 (51%), Gaps = 15/400 (3%)
Query: 31 EIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EIA++VNG + + T D+R L PN F +TG+H D H+FI+ +
Sbjct: 7 EIAKAVNGDLNSKKYENVDVTGVSFDSRKLKPN--DLFVPLTGKH-DGHDFIASAIENGA 63
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
+ KGF + + +TL L +++ + N + + +V +TGS GK+TT
Sbjct: 64 SATFWNKSRSEDAPKGFPVILVD---DTLKVLQDLSSHYLN-KINPKVVAITGSNGKTTT 119
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K MIA L + NV +++ N+NN +GV ++++ ++ + V+EMGM G++ L+++
Sbjct: 120 KDMIASILAT-QFNVCKTHANFNNEIGVPITILSMESNTEYLVVEMGMDRPGQLDFLSKL 178
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
+P+I V+ +G++H+E G+ + +A AK EI + V V + D+PL+ V
Sbjct: 179 VKPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLRPDGVFVYDGDEPLLNERAKALDV 238
Query: 267 RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVA 326
K+ FG + D+ V +G K M KF IP G + NA AA V
Sbjct: 239 EKLTFGRKDTNDI--YPKDVFDGDHETTFKTNKLGNM-KFTIPLIGDYNVNNALAAIEVG 295
Query: 327 TLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN 386
L + A + +L + + R+E + +G I++D YN+NP + +A + +D +
Sbjct: 296 ELAEILPANMRGALDHTNFTNNRTEWVKGANGEMILSDVYNSNPSALKAVLKAFQDTHLD 355
Query: 387 GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
GKRV +LGDMLELG +E HE+I I + LVG
Sbjct: 356 GKRVAVLGDMLELGDHAQEMHEEISDAINPQLIQQVYLVG 395
>gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Koribacter versatilis Ellin345]
gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Koribacter versatilis Ellin345]
Length = 458
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 181/375 (48%), Gaps = 10/375 (2%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGN 111
D+R + P + FFA+ G+ D H+++ L V+ + ++ + +
Sbjct: 30 DSRTIKPG--ELFFAVKGERLDGHDYVQAALDRGAVAAVVSREFPARFNGTRNLLVADDP 87
Query: 112 VNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171
+ L+ L M S + +VGVTGS GK+TTK IA L S + V +S GN NN
Sbjct: 88 LLALHRLAEMV----RSLWHHPVVGVTGSAGKTTTKECIAHVLAS-KLKVLKSEGNLNNH 142
Query: 172 VGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231
G+ L L+ ++ +IAV+EMGMS GEI LA++A+P VV NV HLE+ S+ +
Sbjct: 143 FGLPLQLLKVEPEHEIAVIEMGMSHAGEIAALAKLAQPNTGVVTNVAPVHLENFDSIAGI 202
Query: 232 ARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
ARAK E+ G VLNADD V+ + FG +R D R ++ G
Sbjct: 203 ARAKYELIAALPRGGCAVLNADDEFVSQFGRDFHGTVLMFGVKRAADFRAENVEML-GAA 261
Query: 292 GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE 351
G + L + +P G H NA AA AV G+++ SL P R E
Sbjct: 262 GSKFDLRFREKGYPAEMPLIGEHNVYNALAAVAVGVHHGIAIESAIASLKTLKPADKRGE 321
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKIL 411
+V +G +VND YN+NP + A +D L + +R+VI G+MLELG H
Sbjct: 322 -VVEIAGATVVNDCYNSNPKALNAMVDALAKMPAQ-RRIVIAGEMLELGPEGEHLHRDSG 379
Query: 412 SYCCDACIDLIGLVG 426
+ L+G+ G
Sbjct: 380 KHMKGIVDHLVGVRG 394
>gi|395786575|ref|ZP_10466302.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella tamiae Th239]
gi|395422873|gb|EJF89069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella tamiae Th239]
Length = 481
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 214/421 (50%), Gaps = 26/421 (6%)
Query: 24 SPIWTINEIAESVNGKI---LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
S +WT +E+A+++ G++ L GI D+R K FF I G FD H+F
Sbjct: 2 SALWTSSELADALKGEVTGKLSEEFHGI-SIDSR--TAQKGDIFFCIKGDQFDGHDFAQK 58
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGN--GNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ V + V N K + + L L N+A AR R ++ +T
Sbjct: 59 AIENGASVLI----VHKNRTKSLYHLATPMIAVDDVLQGLQNLAKAAR-LRSKAKIIAIT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK ++ +L ++G V + ++NN GV L+L + + D V E+GM+
Sbjct: 114 GSVGKTTTKELLRQSLATVG-KVHANPLSFNNHWGVPLTLARMPKETDYGVFEIGMNHAN 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L ++ RP++ +V + HL SLED+A AK EIF+ + LNADD +
Sbjct: 173 EIRPLVKLVRPDVAIVTQIAAVHLGFFSSLEDIADAKAEIFEGMNDNGIVFLNADDAFFS 232
Query: 259 NL---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L + +GV+ ++ FG D RL + + +++++ E MVK + +PG H
Sbjct: 233 YLRDKALLQGVQTIWCFGEAAFADYRLEKLHMMSDSSVMKILIRGEEAMVK--VGAPGRH 290
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSG-IKIVNDAYNANP 370
+ N A G +LA++ ++L++F R L++ + G +++++YNANP
Sbjct: 291 IVQNCLAVIGACDNVGANLAKIFMALADFKAENGRGARYRLMLPKGGYFTLIDESYNANP 350
Query: 371 ISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
S RAA++LLK G+ + +LGDMLELG+ + H ++L A ++ I L+G
Sbjct: 351 ASMRAALELLKATPKTERGRHIAVLGDMLELGAHSHKLHLELLEPIEAAEVNPIYLIGHE 410
Query: 429 V 429
+
Sbjct: 411 M 411
>gi|392426980|ref|YP_006467974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus acidiphilus SJ4]
gi|391356943|gb|AFM42642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus acidiphilus SJ4]
Length = 477
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 189/364 (51%), Gaps = 27/364 (7%)
Query: 62 QWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN------GNVNTL 115
+ FFA+ G+ D H+++ + G VI ++G+ Q +G G L
Sbjct: 39 EMFFALPGERVDGHDYMDA-AWKNGAALVIA-------EEGYFQRKGQMPCAPEGKALLL 90
Query: 116 NSLVNMACY--ARNSRFS--GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171
S A AR+ R +VGVTGS GK+TTK MI+ L + V++S N NN
Sbjct: 91 VSSGQQALQELARHWRLELGAKVVGVTGSNGKTTTKDMISAVL-AQRFRVYRSKENHNNE 149
Query: 172 VGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231
+G+ L+++ +I VLEMGM G GEI L + +P+I V+ N+G +HLE L + E +
Sbjct: 150 LGLPLTILNSPPETEILVLEMGMRGLGEIKALCDIGKPDIGVITNIGTTHLELLLTHERI 209
Query: 232 ARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG-CDVRLVAAQVA-NG 289
A+AK E+ + + +LNA+D + R +F+G G + +Q+ G
Sbjct: 210 AQAKWELIEALPKDGIAILNAEDEKSVQKSYADPHRSLFYGTSEGLVSPDIQGSQLTPKG 269
Query: 290 GLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
LG + + R+ +P PG H ++A AA AV T+FG+SLA L +MR
Sbjct: 270 TLGTEFQVSYHRQKEAAFLPLPGKHNVLDALAALAVGTVFGISLADGCKGLRELEMSKMR 329
Query: 350 SELLVSRSGI---KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
EL R GI ++ND YNANP+S +A++ +LK+ A K V ILG+M ELGS
Sbjct: 330 LEL---RPGIFESMLINDVYNANPVSMQASLRILKERAQENKTVAILGEMYELGSAAAAG 386
Query: 407 HEKI 410
H ++
Sbjct: 387 HREV 390
>gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacterium extorquens DM4]
gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Methylobacterium extorquens DM4]
Length = 487
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 131/426 (30%), Positives = 200/426 (46%), Gaps = 36/426 (8%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFI 78
+++P+WT + + G+++ G P + DTR L P FFAI G+ D H+F+
Sbjct: 2 NDAPLWTPAALEAATGGRLI--GTPRAVTGASIDTRSLEPG--DLFFAIRGEARDGHDFV 57
Query: 79 SPELYGKGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
L V+ ++ + V G G L+++ + AR +R ++
Sbjct: 58 RAALEKGAGAAVVAEARAKEFEGAGPVLAVPGEGEDPVLDAMRRLGLAAR-ARTGAAIIA 116
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+ TK + L + G S ++NN GV L+L + V E+GM+
Sbjct: 117 VTGSVGKTGTKEALRHVLSAQGAT-HASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNH 175
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP- 255
EIL L M RP++ ++ V H+E SL +A AKGEIF K G V V+N D+P
Sbjct: 176 GAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPN 235
Query: 256 ---LVANLTVPRGVRKVFFGWRRGCDV-------RLVAAQVANGGLGVQVVLEKEREMVK 305
L+A+ R R + FG DV R + V +G+ V
Sbjct: 236 YERLLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGIPVT--------- 286
Query: 306 FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG---IKIV 362
+ + +PG H+A+N+ A G LA+ +SL++ P R E R G +V
Sbjct: 287 YQLGTPGRHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLV 346
Query: 363 NDAYNANPISTRAAIDLLK--DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
+++YNANP S RAA+ L D G+R+ +LGDM ELG+ H ++ ID
Sbjct: 347 DESYNANPASIRAALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGID 406
Query: 421 LIGLVG 426
L+ VG
Sbjct: 407 LVFAVG 412
>gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum B str. Eklund 17B]
gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum B str. Eklund 17B]
Length = 453
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 206/391 (52%), Gaps = 19/391 (4%)
Query: 27 WTINEIAESVNGKILKWGPPG---IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+NE+ ++++G++L G I TDTR + +KN F A+ G +F+ + ++ +
Sbjct: 3 LTLNEVLKAIDGELLIKNNEGNFEKISTDTRKI--DKNSLFIALKGNNFNGNNYVVEAIK 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLN----SLVNMACYARNSRFSGVLVGVTG 139
V +I + + ++ G G V +N +L +A Y R + +VG+TG
Sbjct: 61 AGATVAII-----DEVNFKLEELNGKGTVIKVNDSKTALGALAKYYR-EKLGIKVVGITG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK++TK ++A A S +VF++ GN+NN +G+ L + +D + DIAVLEMG + E
Sbjct: 115 STGKTSTKDLVA-AFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFNE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I LA +ARP++ ++ NVG SH+E L + E++ + K I K + V+N ++ ++
Sbjct: 174 IHRLANIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNNTLVVNYENDMLQK 233
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ + G+ + D+ ++ V E +F + G H +NA
Sbjct: 234 VNESNEFKIEKIGYDKKYDLYAENIELTEESTSFDAV-NSNGERHRFKLNMVGEHNILNA 292
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
++ FG++ ++ + L+NF MR E + ++ I+ND YNA+P S ++A+ +
Sbjct: 293 LLGIRISENFGITFEEMELGLNNFEATSMRLE-FIKKNNFTIINDCYNASPDSMKSALSV 351
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKI 410
LK + +++ +LGDM ELG + SHE +
Sbjct: 352 LKTYSG-SRKIAVLGDMGELGEHAKSSHEMV 381
>gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate/d-alanyl-d-alanyl ligase
[Caldicellulosiruptor owensensis OL]
gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor owensensis OL]
Length = 448
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 209/403 (51%), Gaps = 28/403 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA+++NG+I + I+ + + + N KN F + G FD H+F+ L
Sbjct: 3 LW-LSEIAKALNGEIKNFSDD-ILVSSFSLNSKNVSKNTLFIPLKGSRFDGHDFVEEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I + N +V+V+ +TL +L ++A Y R+ ++GVTGSVGK
Sbjct: 61 N-GAISFISQKEFKNVRVPYVKVK-----DTLVALQDLASYVRDKLKGLTVIGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L + F++ GN+NN +G+ S++ + IAV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-NYKYKTFKNQGNFNNHIGLPFSILNMPEDTQIAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD-VCVLNADDPLVANLTV 262
+++A+P+I V+ N+G +H+E+L S ++ AK EI Q+ D + ++N D+ + L +
Sbjct: 174 SQIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEI-QDGMADDGMLIINNDNDI---LNL 229
Query: 263 PRG---VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+G R + G R Q G +V + + I S H N+
Sbjct: 230 HKGELKKRIITIGIENESHFRAKNVQRHQNGFSFEV------DNYTYFIESFNFHDIYNS 283
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
A AV + G+ + ++ ++ R E ++ + I +++D YNA+ S +AID
Sbjct: 284 LFAIAVGIILGIDRQLIKEAIRRKERLKRRFE-IIQKGSITVIDDTYNASTHSMLSAIDS 342
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+ +GK++++LGDMLELG E H K+ Y ID++
Sbjct: 343 I--CEFDGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVV 383
>gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Chloroflexus aurantiacus J-10-fl]
gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Chloroflexus aurantiacus J-10-fl]
Length = 483
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 202/387 (52%), Gaps = 31/387 (8%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ----VCNNWDK- 101
G + TD+R + P F A+TG+ D H F++ + ++ + + +N D
Sbjct: 18 GPVVTDSREVTPGS--LFVALTGERTDGHRFLADVVTRGAAAALVSPEKLTALASNLDTV 75
Query: 102 -------GFVQVEGNGNV-----------NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
Q + V + L +L +A Y R F+ ++G+TGSVGK
Sbjct: 76 ARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQM-FTPTVIGITGSVGK 134
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK ++A A+ S + +S ++N+ V + +L+G+ +AVLEMGM GEI L
Sbjct: 135 TSTKEVVA-AVCSRRLRTLKSQRSFNSEVTLPATLLGLTADHQVAVLEMGMWAAGEIRFL 193
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
A +ARP+I +V NVG SHLE LGS+E +A AK E+ + C+LNADD VA +
Sbjct: 194 ATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELPESLPADGWCILNADDHRVAAMASR 253
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
R + +G+ DVRL+ V++G G+++ + E + + P G H A A AA
Sbjct: 254 TAARVLTYGYAPNADVRLLDV-VSHGLYGIELTVGYEGQSHRLTTPLIGRHHAYTALAAI 312
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
A + G+ + L Q+R ++ + G I++D YNA P+ST AA+ +L +
Sbjct: 313 AAGLVLGLDWDAIAEGLREPGE-QLRLRIVPGQHGTTIIDDTYNAAPLSTIAALQVLAE- 370
Query: 384 ACNGKRVVILGDMLELGSTERESHEKI 410
G+R+ +LG+MLELG+ E H+++
Sbjct: 371 -TKGRRIAVLGEMLELGAASVEGHQQV 396
>gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Nitrosospira multiformis ATCC 25196]
gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrosospira multiformis ATCC 25196]
Length = 449
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 211/396 (53%), Gaps = 31/396 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF----V 104
+ TD+R LA + + F A+ G +FD H+FI + +G +G + Q D+ + +
Sbjct: 11 VSTDSRALA--RGELFVALVGPNFDGHDFIV-QARDRGAMGALVQQDRLTGDQEYGIPLI 67
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL--------ES 156
+V+ NT +L +A Y R +RF+ LV VTGS GK+T K MIA L E
Sbjct: 68 RVQ-----NTRLALGQLAAYWR-ARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQAPEE 121
Query: 157 LGVN----VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIR 212
+ + V + GN NN +G+ L+L+ + AV+EMGM+ GEI L+R+A+P +
Sbjct: 122 MRTDAPDAVLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSVA 181
Query: 213 VVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-F 271
++ N GD+H++ LGS+E VARAKGEIF+ + V+NADDP G R++ F
Sbjct: 182 LITNAGDAHIQGLGSVEAVARAKGEIFEGLDQQGIAVINADDPHNRLWRELAGNRQIIDF 241
Query: 272 GWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGV 331
G + V+A G Q+ L + + + + PG H NA AAAAVA GV
Sbjct: 242 GLKSKAK---VSADYKLTFSGAQITLILPQGVEETTLQVPGEHNVRNALAAAAVAVAVGV 298
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
SL + LS F V+ R + G +++D YNANP S RAA+ GK+V+
Sbjct: 299 SLKTIASGLSTFGGVKGRMQRKCGVRGATLIDDCYNANPDSVRAAL--AVLARAEGKKVL 356
Query: 392 ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+LGDM ELG RE HE+I A ID + +GD
Sbjct: 357 VLGDMGELGDKGREFHEQIGDEARIAGIDELMALGD 392
>gi|348169464|ref|ZP_08876358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Saccharopolyspora spinosa NRRL 18395]
Length = 488
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 137/420 (32%), Positives = 210/420 (50%), Gaps = 24/420 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ +IAE+V G++ + I+ D+R + P F A+ G+ D H+F + +
Sbjct: 5 SLADIAEAVGGRLHRAESSEIVSAGVEFDSRKIEPGG--LFVAVPGERVDGHDFAA-QAV 61
Query: 84 GKGCVGVIGNQVCN---------NWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSG 132
G VGV+ + + + +G + + G+ + + L +A AR+ R
Sbjct: 62 ANGAVGVLAAREVDAPAVIVPPVSSKRGALALAGDVDGSGAAVLAGLAKLARHVVDRLPQ 121
Query: 133 V-LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLE 191
+ +VGVTGS GK++TK +IA LE +G V G++NN +G +++ D VLE
Sbjct: 122 LTVVGVTGSSGKTSTKDLIAQLLEPMGPTVAPP-GSFNNELGHPWTVLRADEGTRHLVLE 180
Query: 192 MGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLN 251
+ G G I L +A P I VLNVG +HL GS E VA+AKGE+ + V VLN
Sbjct: 181 LSARGVGHIANLCEVAPPRIGAVLNVGHAHLGEFGSQEAVAQAKGELVEALPADGVAVLN 240
Query: 252 ADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311
ADDPLVA + R VF G VR +V ++ + E + +P
Sbjct: 241 ADDPLVAAMADRTKARVVFVGESPDAHVRAEDIEVDELARPTFTLVTTQGE-ARVTLPLF 299
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS-ELLVSRSGIKIVNDAYNANP 370
G H NA +AAA+A G ++ QV L + V R E+ + G+ +VNDAYNANP
Sbjct: 300 GEHHVGNALSAAAIALELGATVGQVAERLGSVRRVSARRMEVTETPGGVTVVNDAYNANP 359
Query: 371 ISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
S RAA+ L + G+ +LG M ELG + E+H++I ID + +VG++
Sbjct: 360 ESVRAALKTLAAMTRGRPGRAWAVLGPMAELGELDVEAHDEIGRLAVRLNIDRLVVVGEQ 419
>gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 444
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 201/405 (49%), Gaps = 21/405 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++T++++ + GK++ G DTR + KN FFA+ G D HEF+ L
Sbjct: 1 MFTLDDLLIATGGKLVSKGNEIFKEASIDTRTIG--KNDLFFALKGSKKDGHEFVDEALI 58
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
V N+ + +K V V+ +TL SL N+A Y R +F G ++ V GS GK
Sbjct: 59 KASGAVVSKNEGMDFKNKTVVIVD-----DTLKSLQNLAGYLR-KKFKGKIIAVVGSNGK 112
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK +IA L S + ++ GN+NN +GV L + I+ +I VLE+G + G+I EL
Sbjct: 113 TTTKELIASFL-SKKYKILKTEGNFNNNIGVPLCISRIENNTEIMVLELGTNRPGDIKEL 171
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ P+ ++ N+G H+E GS++ V + EI K N DD + +
Sbjct: 172 CDIVYPDYALITNIGYEHIEGFGSIQGVREGELEILPYVK---TVFANGDDKFLMDGLKR 228
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP--GLHLAINACA 321
+ + FG + CD R N V + ++ F + +P G++ N
Sbjct: 229 YSGQILTFGMSKECDFRAENINFYND----HVEFDFYSDIAAFAVKTPLVGIYNIYNLTG 284
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A AVAT G+S + +F+ V+MR E ++ +G++I DAYNANP S + A+ L
Sbjct: 285 AIAVATFLGISKCSIQQITESFTSVKMRGE-IIKINGVEIFFDAYNANPSSMKVALQELT 343
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ V +LGDMLELG +HE++ + + ID+ VG
Sbjct: 344 RRKKGRRTVAVLGDMLELGEFTDLAHEEVGKWVNEMGIDIFIGVG 388
>gi|420169263|ref|ZP_14675866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM087]
gi|394231726|gb|EJD77350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM087]
Length = 451
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 199/383 (51%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKKNEYSEG-----N 79
Query: 109 NGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G + +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 80 QGPIIWVDDTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + + D+PL+ ++ + + + G
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVNQVKNAKLISIGLNSDSTYTCHM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V N G+ + +KE + +P G H NA A A+ G++ + ++ N
Sbjct: 258 NDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E S + + ++NDAYNA+P S +AAID L G++++IL D+LELG
Sbjct: 313 QLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGRKILILADVLELGPNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ H+++ Y D ID++ G
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFG 393
>gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas artemidis F0399]
gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas artemidis F0399]
Length = 468
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 204/393 (51%), Gaps = 19/393 (4%)
Query: 28 TINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
T +EI + G++L G I TDTR + F A+ G+ FD +F + L
Sbjct: 5 TWDEIRAATGGRLLLGKMRGTDAFAGITTDTRKV--QAGDLFVALRGEKFDGADFAAGAL 62
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGN--GNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
++ V + K ++ G G +TL + +A +A +F +V VTGS
Sbjct: 63 RAGAVAVMLPEPVSDAHRKELDRMSGAVIGVRDTLAAYQQIA-HAWRMKFDIPVVAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK + A AL G V ++ N+NN +G+ L+L+G+ AV+EMGM G+G+I
Sbjct: 122 NGKTTTKELTAAALSGRGA-VCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +A P + +V NVG++H+E LGS+E++ARAK E+ G + +LNADD V +
Sbjct: 181 AALAAIAAPTVGIVTNVGETHMELLGSIENIARAKAELVAAIAPGGIVILNADDARVVAM 240
Query: 261 --TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
GVR + +G R D+R A + A V ER + +P G H N
Sbjct: 241 RAQAADGVRILTYGIRAEADIRAQALRSACNETRFMVTYGGERH--DYAVPLLGRHNVYN 298
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI-KIVNDAYNANPISTRAAI 377
A AA A G+S ++ LS +P +MR E V G +NDAYNA+P S RAA+
Sbjct: 299 ALAALAAGFALGLSPQEMQAGLSRLAPPKMRYE--VHHVGAWTFINDAYNASPASMRAAL 356
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+ + G+R+ +LGDMLELG+ E H +
Sbjct: 357 ETTARL-YPGRRIAVLGDMLELGAASAEGHRSV 388
>gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH130]
gi|417898368|ref|ZP_12542289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21259]
gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus TCH130]
gi|341848728|gb|EGS89888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus 21259]
Length = 452
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 199/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVI-GNQVCNNWDKGFVQV 106
+ D+R A +KN F G++ D H F+S L G G G + N + V
Sbjct: 29 VTIDSR--AISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDENVSGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R+ + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAQAYLRH--VNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ + +P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLTQPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAKCISIGV--ATDNALVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + + +P G H NA A AV G++ + +L S
Sbjct: 257 VDDRDTTGISFTINNKEH---YDLPILGKHNMKNATIAIAVGHELGLTYNTIYQNLKKVS 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + G+R++ILGD+LELG +
Sbjct: 314 LTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT--GRRILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
E H + +Y + ID++ G+
Sbjct: 372 EMHIGVGNYLEEKHIDVLYTFGNE 395
>gi|418413339|ref|ZP_12986581.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus epidermidis BVS058A4]
gi|410879226|gb|EKS27077.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus epidermidis BVS058A4]
Length = 451
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 200/383 (52%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKYSEGNQGAII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + + D+PL+ ++ + + + G
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVNQVKNAKLISIGLNSDNTYTCHM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V N G+ + +KE + +P G H NA A A+ G++ + ++ N
Sbjct: 258 NDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E S + + ++NDAYNA+P S +AAID L G++++IL D+LELG
Sbjct: 313 QLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGRKILILADVLELGPNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ H+++ Y D ID++ G
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFG 393
>gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[butyrate-producing bacterium SS3/4]
Length = 462
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 213/400 (53%), Gaps = 22/400 (5%)
Query: 37 NGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ 94
G +L G G++ R+ + F I G+ DAH+F+ ++ KG V+ ++
Sbjct: 13 TGGVLLSGDDGVMLNKIRLDSRQVETGDLFVPIIGEKVDAHKFLE-QVAEKGAGAVLTSE 71
Query: 95 VCNNWDK------GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
++ ++ V+ +T +L + Y R R + +VGVTGSVGK+TT+
Sbjct: 72 HKEKTEEMAETSCAWIAVD-----DTKKALQAVGRYLRK-RLTLPIVGVTGSVGKTTTRE 125
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
MIA AL S +V+++ GN N++VGV +++ I + ++ VLE+GMS GE+ +AR+A+
Sbjct: 126 MIAAAL-SARFHVYKTPGNSNSQVGVPITVSEITKEDEVGVLELGMSEPGELTVIARIAK 184
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK 268
P++ V+ N+G +H+E LGS E++ R K I G + +LN DD ++ GV+
Sbjct: 185 PDVAVITNIGITHIEQLGSRENIYREKLTIQDGLSDGGILILNGDDDMLCRTRGKVGVKT 244
Query: 269 VFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATL 328
V++G CD R V + +G V + + K ++ G H +NA AA AV
Sbjct: 245 VYYGTGETCDYRAVDLVLMDGKTEFTAVHAGKTQ--KVLLNVMGTHNVMNALAAIAVCCE 302
Query: 329 FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK 388
G+++ + L F + R ++ + +++D+YNA+P S +AA+D+ + + GK
Sbjct: 303 RGMTMEEAAEGLLTFHGFKHRQQVY-ADGRFTVMDDSYNASPASMKAALDVFQGL--TGK 359
Query: 389 R-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
R + +L DM ELG H ++ Y ++ +DL+ +G+
Sbjct: 360 RHIAVLADMKELGGNYLAYHREVGEYAANSGVDLVVTLGE 399
>gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis SK135]
gi|417656926|ref|ZP_12306604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU028]
gi|417913854|ref|ZP_12557515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU109]
gi|418604109|ref|ZP_13167476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU041]
gi|418624593|ref|ZP_13187266.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU125]
gi|418663730|ref|ZP_13225239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU081]
gi|419771566|ref|ZP_14297617.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-K]
gi|420182054|ref|ZP_14688196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM049]
gi|420220942|ref|ZP_14725897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH04008]
gi|420233549|ref|ZP_14738157.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH051668]
gi|421608790|ref|ZP_16050003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis AU12-03]
gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis SK135]
gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU028]
gi|341654312|gb|EGS78059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU109]
gi|374405905|gb|EHQ76816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU041]
gi|374411268|gb|EHQ81985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU081]
gi|374827155|gb|EHR91021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU125]
gi|383361064|gb|EID38446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-K]
gi|394250518|gb|EJD95700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM049]
gi|394285392|gb|EJE29471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH04008]
gi|394299831|gb|EJE43359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH051668]
gi|406655531|gb|EKC81957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis AU12-03]
Length = 451
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 200/383 (52%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKYSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + + D+PL+ ++ + + + G
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVNQVKNAKLISIGLNSDNTYTCHM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V N G+ + +KE + +P G H NA A A+ G++ + ++ N
Sbjct: 258 NDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E S + + ++NDAYNA+P S +AAID L G++++IL D+LELG
Sbjct: 313 QLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--GMKGRKILILADVLELGPNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ H+++ Y D ID++ G
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFG 393
>gi|423459771|ref|ZP_17436568.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5X2-1]
gi|401142965|gb|EJQ50504.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG5X2-1]
Length = 454
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 196/373 (52%), Gaps = 20/373 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D H+++ E + G V + + KG FV +TL +L +A + R
Sbjct: 51 DGHDYVK-EAFDNGAVASLWKKSYGTPPKGMPIIFVD-------DTLFALQQLAQFYR-K 101
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I+ L S V ++ GN+N+++G+ L+++ + R +
Sbjct: 102 ELNVKVIGITGSNGKTTVKDIISTIL-STTHRVHKTKGNFNSQIGLPLTILEMKRDTEFL 160
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+ +A+P++ ++ +G SHLE+LGS E++A+AK EI K +C
Sbjct: 161 ILEMGMSEKGQIRNLSIIAQPDVVIITMIGHSHLETLGSKEEIAKAKLEIIDGLKGEGLC 220
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+PL+ + FG + D L+ V GV L + +++ +
Sbjct: 221 LYNGDEPLLLKNKNLSSINCKAFGEKYTND--LIPTNVQLDEYGVHFKLNDSK--IQYDV 276
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H +N AV + V+ ++ +L + MR + L +++G I+NDA+NA
Sbjct: 277 PLHGKHNILNTIVGIAVGQFYNVTTEKIQKALRQVNITHMRFQFLTAKTGFTIINDAWNA 336
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD- 427
+P S +AAI+ L+ + K+++++GDMLELG H +I + I + G+
Sbjct: 337 SPSSMKAAIETLQILNAYKKKMIVIGDMLELGENAETYHREIGKMLNEESIQYVFTYGEL 396
Query: 428 -RVVVQCKWRKWS 439
+V + +K+
Sbjct: 397 AEIVAEEARKKYD 409
>gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis SK119]
gi|418618982|ref|ZP_13181825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis VCU122]
gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis SK119]
gi|374825843|gb|EHR89762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis VCU122]
Length = 451
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 195/375 (52%), Gaps = 21/375 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R + K F G++ D H F+ L G + ++ + V
Sbjct: 29 VTIDSRHVE--KEMLFVPFKGENVDGHRFVEQALKDGAGASFYEKGQDISDSIQGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ +TL +L +A Y ++ + ++GVTGS GK+TTK MI L + V ++
Sbjct: 87 D-----DTLTALQQLAKAYLKH--VNPKVIGVTGSNGKTTTKDMIESVLHT-EFRVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D+ +I++LEMGMSG EI L+++A P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIAEPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + V G +
Sbjct: 199 GSREGIAKAKSEITIGLKSDGTFIYDGDEPLLKPHVENVKNAKLVSVGLNHENTLVCKVE 258
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
N G+ + ++ E+ P G+H NA A A+ G+ + ++SN
Sbjct: 259 NSKNDGIAFMINNKEHYEL-----PILGIHNMKNATIAIAIGHELGLDYNTIQKNISNVQ 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E V+ + I ++NDAYNA+P S +AAID L + NG+++++L D LELG +
Sbjct: 314 LTGMRMERHVTDNQITVINDAYNASPTSMKAAIDTLSHM--NGRKIIVLADSLELGENSQ 371
Query: 405 ESHEKILSYCCDACI 419
HE + +Y D I
Sbjct: 372 RMHEDVGAYLEDKGI 386
>gi|431806061|ref|YP_007232962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Liberibacter crescens BT-1]
gi|430800036|gb|AGA64707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Liberibacter
crescens BT-1]
Length = 475
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 208/413 (50%), Gaps = 21/413 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTR-ILAPNKNQWFFAITGQHFDAHEFISPEL 82
+W IN+ + G+I + I D+R I+A + FFAI G+ FD H++IS +
Sbjct: 4 LWNINDFCLATKGRIFGDSSNDVNGISVDSRSIIAGDA---FFAIPGKRFDGHDYISTAI 60
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
K + V + + G V+V + +L +A AR R ++ +TGSVG
Sbjct: 61 MKKASLIVACEKRLSAL--GHVKVPVIIVDDVFAALNRLAVAAR-IRSKAKIIAITGSVG 117
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK M AL S+G ++NN +GV L+L + D V E+GM+ GEI
Sbjct: 118 KTTTKEMFRHALSSIG-KTHVPINSYNNFLGVPLTLARMPVDTDFGVFEIGMNHPGEIRS 176
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVAN 259
L ++ RP I V+ NVG++HL + ++++A AK EIF+ + VLN D+ +
Sbjct: 177 LVKLVRPHIAVITNVGNAHLGNFSGIDEIAAAKAEIFEGLEKQGSVVLNHDNDYFLFLKQ 236
Query: 260 LTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+ + G+RK++ FG D RL+ + +++ + +V I +PG H+ N
Sbjct: 237 VALSSGIRKIYSFGQNPNSDFRLIKFERKID--HSKIITMVQDLLVDVEIGAPGFHMVEN 294
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPISTRA 375
A A +L V + + SLS F P + R +L + +++++YNA+P+S +
Sbjct: 295 ALATLGTISLLKVDMKKPIESLSTFKPARGRGFRYKLALETGYFTLIDESYNASPVSMDS 354
Query: 376 AIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
AI LL + + G+ + +LGDM ELG E++ H + + I I L G
Sbjct: 355 AISLLAETPLEKEGRHIAVLGDMCELGPMEKKVHSDLSKSLIASGISYIWLSG 407
>gi|49477542|ref|YP_036327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|49329098|gb|AAT59744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 454
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 173/314 (55%), Gaps = 6/314 (1%)
Query: 114 TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVG 173
TL +L +A + R + ++G+TGS GK+T K +I L S V ++ GN+N+++G
Sbjct: 88 TLFALQQLAQFYRRE-INVKVIGITGSNGKTTVKDIIESILSST-YRVHKTKGNFNSQIG 145
Query: 174 VALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVAR 233
+ L+++ + R + +LEMGMS KG+I L+R+A+P++ V+ +G SHLE+LGS +++A+
Sbjct: 146 LPLTILEMKRNTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAK 205
Query: 234 AKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV 293
AK EI + + + N D+PL++ V FG + D+ Q+ G+
Sbjct: 206 AKLEIIDGLRENGLFLYNGDEPLLSRNNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVHF 265
Query: 294 QVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL 353
++ K +++ +P G H N AV + V ++ +L + QMR + L
Sbjct: 266 KLNHTK----IQYDVPLHGKHNIFNTIVGIAVGQFYKVPTEKIQEALQQINITQMRFQFL 321
Query: 354 VSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSY 413
++ G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG H +I
Sbjct: 322 TAKKGFTIINDAWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKM 381
Query: 414 CCDACIDLIGLVGD 427
+ I + G+
Sbjct: 382 LNEENIQYVFTYGE 395
>gi|423529962|ref|ZP_17506407.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB1-1]
gi|402447334|gb|EJV79189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuB1-1]
Length = 454
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 208/407 (51%), Gaps = 25/407 (6%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+N++ E VNG+ L+ I +C D++ + K F I D H+++ E
Sbjct: 6 LNKLEEIVNGEGLQESFHYIEMQGVCIDSKKIT--KGNLFVPIIRVK-DGHDYVK-EAME 61
Query: 85 KGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG + + + KG FV +TL +L +A Y R + V +G+TGS
Sbjct: 62 KGAAASLWKKSYGDPPKGIPIIFVD-------DTLLALQKIARYYRKTSNVKV-IGITGS 113
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+ K +I+ L S V ++ GN N+++G+ L+++ + + + +LEMGMS G+I
Sbjct: 114 NGKTMVKDIISTIL-STTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILEMGMSETGQI 172
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA++A+P++ ++ +G SHLE+LGS E++A+AK EI G + + N D+PL++
Sbjct: 173 RNLAQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLYNGDEPLLSQN 232
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
G+ FG + L V GV L+ + +++ +P G H N
Sbjct: 233 INMLGIESKSFGGKYTNG--LFPTNVQLDEYGVHFKLKHSK--IQYDVPLHGKHNIFNTI 288
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AV + V + ++ +L + QMR + L +++G I+NDA+NA+P S + AI+ L
Sbjct: 289 VGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKVAIETL 348
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+ + K+++++GDMLELG H +I + I + G+
Sbjct: 349 QKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYGE 395
>gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Desulfobacca acetoxidans DSM 11109]
gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
acetoxidans DSM 11109]
Length = 463
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 216/408 (52%), Gaps = 19/408 (4%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
S ++++ +I G++L+ G G + TD+R + F + G+ FD H+FI
Sbjct: 2 SAVFSVRDIIACTGGRLLQPGAGGNFVGVSTDSR--TAQAGEIFIPLRGERFDGHDFIDR 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMA-CYARNSRFSGVLV 135
+ +G ++ + W + Q + + TL +L ++A C+ RFSG ++
Sbjct: 60 AIK-RGVRALVAAEAW--WQRQNHQFPKDLTIVLVPETLRALGDLAHCW--RQRFSGPVI 114
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
+TGS GK+TTK MIAL L S V ++ N NN +G+ +L+ ++ + AV+EMGM+
Sbjct: 115 AITGSCGKTTTKEMIALVLASR-FRVLKNELNLNNLIGLPQTLLALNTGHETAVVEMGMN 173
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI LA++ARP+I VV NV +HLE LGSLE VA+AK E+ Q + + + NADD
Sbjct: 174 HFGEIRRLAQIARPDIAVVTNVHAAHLEGLGSLEGVAQAKAEVIQGLRNNGLIIYNADDQ 233
Query: 256 -LVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L A L +G + + FG+ G ++ G G + + + ++ + PG H
Sbjct: 234 RLRAALHHFKG-QTLSFGFDPGAQIQ-AGPPCQCGVWGQRAEIRHQGKIWPLELQLPGRH 291
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
NA AAAAV G+ Q+ +L F+ ++ RS++ SGI I ND YNANP S
Sbjct: 292 QLYNALAAAAVGLALGLPAEQISQALGRFAGLKHRSQMQCHTSGIHIFNDCYNANPGSMA 351
Query: 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
A+ L + G+ V LGDMLELG +H ++ + +DL+
Sbjct: 352 MALQTLASLKNQGRAVAALGDMLELGRETIPAHRQLGALAAQLQVDLL 399
>gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Bartonella
clarridgeiae 73]
gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
opimelate--D-alanyl-D-alanine ligase [Bartonella
clarridgeiae 73]
Length = 473
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 210/420 (50%), Gaps = 28/420 (6%)
Query: 26 IWTINEIAESVNGKILKWGP---PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+W + ++NG + P PGI D+R L + FF I G H D H+F +
Sbjct: 4 LWDKQALISAMNGFTVGCLPETFPGI-SIDSRTLL--EGDVFFCIKGHHLDGHDFAAHAY 60
Query: 83 -YGKGCVGVIGNQV--CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
G G + V N++ D + V + L SL +A AR R ++ +TG
Sbjct: 61 AQGAGVLVVAENRLDEMKKIDAPLIVVS-----DVLQSLEKLAQAARK-RSKAKIIAITG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK + ALE++G V + ++NN GV L+L + D A+ E+GM+ K E
Sbjct: 115 SVGKTTTKEALKQALETVG-KVHANLASFNNCWGVPLTLARMPIDSDYAIFEIGMNHKDE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L ++ P + ++ + H+E SLE++A AK EIF+ + +LNADD +
Sbjct: 174 IRPLVKLVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEGLDKDGIALLNADDHFFSY 233
Query: 260 LTVPR---GVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
L GV+K+ FG D + + + V L+++ M+K I +PG H+
Sbjct: 234 LLQKAKQFGVKKIRSFGQSNCADYQAKEVRRLENCSCMIVHLDQKDVMIK--IGAPGQHM 291
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL---VSRSG-IKIVNDAYNANPI 371
N + A G LA V ++L+ FS + R L +S G +++++YNANP
Sbjct: 292 VQNGLSVLAACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTFHLIDESYNANPT 351
Query: 372 STRAAIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
S RAA+DLL I G+R+ ILGDMLELG + H +L C + + L+ LVG +
Sbjct: 352 SMRAALDLLATGPIGIGGRRIAILGDMLELGDHSEKLHRDLLQPICVSGVHLVFLVGKEM 411
>gi|442323134|ref|YP_007363155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myxococcus stipitatus DSM 14675]
gi|441490776|gb|AGC47471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myxococcus stipitatus DSM 14675]
Length = 467
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/392 (34%), Positives = 195/392 (49%), Gaps = 19/392 (4%)
Query: 44 GPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN-QVCNNWD 100
GP G +CTDTR L + F A+ G+ FDAH F+ G V+ +
Sbjct: 23 GPAGFTAVCTDTRAL--TQGCLFVALVGERFDAHSFVDAAARGGAAAAVVAKGRTLPVLP 80
Query: 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN 160
+GFV E +TL +L + + R RF + V GS GK+TTK M+ L + G
Sbjct: 81 EGFVLYEVE---DTLRALGALGRHHRQ-RFRIPICAVGGSNGKTTTKEMVGAILATRG-P 135
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
++ GN+NN +GV L+L ++ AV+E+GM+ GEI L R+ +P+ V+ V
Sbjct: 136 ALKTEGNFNNEIGVPLTLFRLEPQHVAAVIEVGMNQPGEIERLTRVVQPDAGVITVVQPE 195
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
HLE LGSL+ VA A+GE+FQE G V+N DD L+ ++ FG DVR
Sbjct: 196 HLEGLGSLQGVANAEGEMFQEMGAGTTIVVNVDDALIPAQAERSAANRLTFGRAESADVR 255
Query: 281 LVAAQVANGGLGVQVVLEKERE---MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337
LV+ + V V RE + F+ P H A NA AA AVA G + +
Sbjct: 256 LVSVETKGLEGMVATVRHLGREWPVRLSFIGP----HNAQNATAAFAVALALGYTPEECV 311
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD-IACNGKRVVILGDM 396
L P R ++ R G+ +++D YNANP S AA++ L + +G+ V +LGDM
Sbjct: 312 RGLEMARPYSRRLNVVAGRGGVTVIDDCYNANPASMDAALETLGTLVTADGRAVAVLGDM 371
Query: 397 LELGSTERESHEKILSYCCDACIDLIGLVGDR 428
LELG E E H + L + L+ G R
Sbjct: 372 LELGPGEMEEHAR-LGELAGSKAALVAFFGPR 402
>gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus MM3]
gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus MM3]
Length = 451
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 180/330 (54%), Gaps = 8/330 (2%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL +L +A + R + ++G+TGS GK+T K +I+ L S V ++ GN+N+++
Sbjct: 84 DTLFALQQLAQFYR-KELNVKVIGITGSNGKTTVKDIISTIL-STTHRVHKTKGNFNSQI 141
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ L+++ + R + +LEMGMS KG+I L+ +A+P+I ++ +G SHLE+LGS E++A
Sbjct: 142 GLPLTILEMKRDTEFLILEMGMSEKGQIRNLSIIAQPDIVIITMIGHSHLETLGSKEEIA 201
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
+AK EI K +C+ N D+PL+ + FG + D L V G
Sbjct: 202 KAKLEIIDGLKDEGLCLYNGDEPLLLKNKNLSSITCKAFGEKYTND--LFPTNVQLDEYG 259
Query: 293 VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
V L + +++ +P G H +NA AV + V ++ +L + MR +
Sbjct: 260 VHFKLNDSK--IQYDVPLHGKHNILNAIVGIAVGQFYNVPTEKIQKALRQVNITHMRFQF 317
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
L +++G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG H +I
Sbjct: 318 LTAKTGFTIINDAWNASPSSMKAAIETLQTLNAYKKKMIVIGDMLELGKNAETYHREIGK 377
Query: 413 YCCDACIDLIGLVGD--RVVVQCKWRKWSM 440
I + G+ +V + +K+ +
Sbjct: 378 MLNQESIQYVFTYGELAEIVAEEARKKYDI 407
>gi|334129349|ref|ZP_08503154.1| LOW QUALITY PROTEIN: Putative murein precusor biosynthesis
bifunctional protein
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase MurF [Methyloversatilis
universalis FAM5]
gi|333445575|gb|EGK73516.1| LOW QUALITY PROTEIN: Putative murein precusor biosynthesis
bifunctional protein
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase MurF [Methyloversatilis
universalis FAM5]
Length = 465
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 143/416 (34%), Positives = 209/416 (50%), Gaps = 28/416 (6%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
S +WT +++A + G + GP I TD+R A F A+ G+ FDAH+FI+
Sbjct: 2 SALWTASDVAAACGGTLS--GPDVDIRGFSTDSR--AVKTGDLFVALRGERFDAHDFIAD 57
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
VI + C + ++V +T +L ++A A SRF+ L+GVTGS
Sbjct: 58 VQAAGAAAAVIAHD-CTHAAGTLIRV-----ADTRIALGDIA-RAWRSRFTLPLIGVTGS 110
Query: 141 VGKSTTKSMIALALESLGVNV--------FQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
GK+T K MIA L + +V + GN NN +GV L L G+ +AV+EM
Sbjct: 111 NGKTTVKEMIAAILRAHAASVGWQPDSAVLATRGNLNNDIGVPLMLFGLRDTHRMAVIEM 170
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GM+ GEI LA MA+P + +V N HLE + S+ +VAR G++F V V+N
Sbjct: 171 GMNHPGEIAWLAGMAKPTVALVNNAQREHLEFMNSVAEVARENGDVFDALGADGVAVVNG 230
Query: 253 DDPLVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311
DD R+V F R + V A GLG ++ L + + P
Sbjct: 231 DDDFADYWCGRNAGRQVLRFSLDRAAE---VTADATPEGLGYRLDLHGAFGTARITLRVP 287
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
GLH A NA AA A G +A V +L+ F V+ R ++ +G +++D+YNANP
Sbjct: 288 GLHNARNALCAATAALAAGADMAAVVWALNRFEGVKGRQQVRAGLAGSTVIDDSYNANPD 347
Query: 372 STRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S RAAID+L + G+RV++LGDM E+G E H + +Y + ID + GD
Sbjct: 348 SVRAAIDVLS--SATGRRVLVLGDMGEVGDQGPEFHREAGAYALERGIDALLATGD 401
>gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
PCC 7120]
gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
PCC 7120]
Length = 451
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 195/363 (53%), Gaps = 24/363 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR++ P + F A G+ FD HEFIS + ++ + N +QV
Sbjct: 33 IQTDTRMIKPG--EVFLAFRGEKFDGHEFISSAIARGAIAAIVDDD-YENPGLPVLQVS- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + + + R+ RF ++GVTGSVGK+TTK +IA L + G NV ++YGN+
Sbjct: 89 ----NTLEAYQKLGRWWRD-RFDIPVIGVTGSVGKTTTKELIAAVLGTKG-NVLKTYGNY 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ ++ D AV+EM M G+G+I ELA++ARP I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAELAQIARPTIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E +A AK E+ E V +LN D+PL+ +V G DV+
Sbjct: 203 EAIAEAKCELLAEMPKDSVAILNHDNPLLMATAAKFWSGEVLTYGLSGGDVQ-------- 254
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G L ++E ++ +P PG H A N AA AVA + G+ + + +S P
Sbjct: 255 GSLVDNAIVEVAG--LRLPLPLPGRHNATNYLAALAVAKVLGIEWSSLQAGVSVNMPTG- 311
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTERESH 407
RS+ + + I+++ YNA P + AA+ LL D GKR + +LG M ELG + H
Sbjct: 312 RSQRFSLPNDVLILDETYNAAPEAMLAALQLLAD--TPGKRKIAVLGAMKELGERSAQLH 369
Query: 408 EKI 410
+++
Sbjct: 370 QRV 372
>gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 476
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 208/427 (48%), Gaps = 24/427 (5%)
Query: 15 KTTFRCPSNS---PIWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAI 67
KTT + +N W++ +A GK++ PG I TD+R + P + I
Sbjct: 3 KTTNQKKTNEMAFEPWSVEAVAAITQGKVVH---PGAAIHGIATDSRQVKPR--DLYIPI 57
Query: 68 TGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN 127
G D H+FI + + W +G + G +T ++ +A A
Sbjct: 58 IGARNDGHDFIDAACANGAAAVLCDSDHLPAW-QGKIDAGIVGVADTFEAMRALAA-ANR 115
Query: 128 SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDI 187
+R+ +V VTGS GK+TTK +IA L S+G ++ GN+NN VGV L+L + A +
Sbjct: 116 ARYDIPVVAVTGSAGKTTTKDLIASVL-SMGYQTMKTQGNFNNEVGVPLTLFQLTPAHEA 174
Query: 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDV 247
AV+EMGM+ GEI RP I V+ N+G +HLE+LGS E+ +AK EIF + D+
Sbjct: 175 AVVEMGMNHPGEIARSIGEVRPHIGVITNIGSAHLENLGSKENTLKAKMEIFGTMEKDDI 234
Query: 248 CVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFV 307
++N DDP + + V R R V G R D L A + G L E + V F
Sbjct: 235 ALINGDDPYLRRI-VARDYRVVRVGIRE-PDADLKAEAIREDLSG----LYFEADGVPFH 288
Query: 308 IPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367
PG+H N A + + + A + L F P R + + G++ VNDAYN
Sbjct: 289 FKWPGIHNVYNCLIAIWIGRYYHLDDAAIQAGLDAFVPSGNRMQ-MAEVGGLRFVNDAYN 347
Query: 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
ANP S RAA+D + +A G+++ +LGDMLE+G H + Y LIG VG+
Sbjct: 348 ANPESMRAAMDTVCAVA-EGRKIAVLGDMLEIGENAEAWHRAVGEYAGTHMDVLIG-VGE 405
Query: 428 RVVVQCK 434
C+
Sbjct: 406 WAETLCE 412
>gi|407796617|ref|ZP_11143570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Salimicrobium sp. MJ3]
gi|407019133|gb|EKE31852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Salimicrobium sp. MJ3]
Length = 449
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 185/370 (50%), Gaps = 33/370 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI-------GNQVCNNWDK 101
+ TDTR +P K F I G++FDAH F++ + G V + V N+
Sbjct: 28 VMTDTR--SPQKQSLFIPIAGENFDAHSFLNKAVEN-GAVATLWEKEKELPEDVPENFPV 84
Query: 102 GFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN 160
FV+ +T+ ++ +A Y +N +V VTGS GK+TTK + A L +
Sbjct: 85 FFVE-------DTVKAMQTLAQNYIKN--VGPAVVAVTGSNGKTTTKDIAASVL-AQKFK 134
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
+ GN NN +GV L++ + ++AV+EMGM+ GEI L+ +ARP+ ++ N+G+S
Sbjct: 135 THHTEGNLNNHIGVPLTIFSMPEDTEVAVIEMGMNNAGEIEVLSNIARPDYAIITNIGES 194
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
H+E LGS +++A AK EI + G + + D+PL+ RGV G+R D R
Sbjct: 195 HIEQLGSRQNIAGAKMEITKGFHEGSSLIFDGDEPLL------RGVEGTACGFRDHVDQR 248
Query: 281 LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
+ + G +V E ++ +P G H NA +A G+ ++ + L
Sbjct: 249 AKGIFLHDEGSRFEVNGE------QYEVPLVGKHNVKNALYVVTLAQKLGMDREEIQLGL 302
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
S MR E L +G + ND YNA+P S +A I+ ++ ++++LGDM ELG
Sbjct: 303 RRLSMTGMRLEKLTGLNGAHVFNDTYNASPTSMKAVIEFVRMYNTKKHKILVLGDMFELG 362
Query: 401 STERESHEKI 410
E H ++
Sbjct: 363 MHSNELHAQV 372
>gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Chthoniobacter flavus Ellin428]
gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Chthoniobacter flavus Ellin428]
Length = 455
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 196/416 (47%), Gaps = 21/416 (5%)
Query: 28 TINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T +IA+ G++ P G + CTD+R L F A+ G FD H FI+ E
Sbjct: 5 TFEKIAQWSAGRLAAGDPQGTVTSVCTDSRSL--KAGDLFVALRGDKFDGHTFIA-EASK 61
Query: 85 KGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+G G I + GF + V+ NTL +L + R S ++G+TGS G
Sbjct: 62 RGAAGAIVEEFPAELPPGFGVILVK-----NTLEALQRLGAEYRRS-LDIQVIGLTGSNG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK + A L V ++ GN NN +G+ L+L+ + I V EMGM+ GEI
Sbjct: 116 KTSTKDLTASVLGE-NFQVTKTDGNLNNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAP 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA MA PE+ ++ N+G +H+E LGS E +A+ KG + + +L+A+D +
Sbjct: 175 LAAMAAPEVGIITNIGMAHIEFLGSREAIAQEKGMLAEALPPSGTLILSAEDEFSPAIAA 234
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
V G +G + A+ + G + + E + PG H+ NA A
Sbjct: 235 RTKADVVLAGINKG---EVFASDLRPSASGTKFTINAEGRTAAAELSVPGEHMVRNAMLA 291
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
A FG+SL + LS + R E + R GI++++D YNANP S AA+ L
Sbjct: 292 VAAGRAFGLSLEECAAGLSKLRLTKGRLEQKMIR-GIQVIDDTYNANPDSVAAALRTLAS 350
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV--VVQCKWR 436
+ G+R+ +LG M ELG H + +D + VG+ + + WR
Sbjct: 351 MPAVGRRIAVLGRMGELGVEAERGHRLVGEVAAQTHVDSVIGVGEEAQWITEAAWR 406
>gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Phenylobacterium zucineum HLK1]
gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Phenylobacterium zucineum HLK1]
Length = 465
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/408 (34%), Positives = 191/408 (46%), Gaps = 27/408 (6%)
Query: 25 PIWTINEIAESVNGKILKWG-PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
P+WT EIA + GK+ G + DTR + P F A+ G D HEF+ + +
Sbjct: 4 PLWTAEEIAAATGGKLAGQAFRAGGVSIDTRTIQPG--DLFVALAGVR-DGHEFVE-QAF 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV--NTLNSLVNMACYARNSRFSGVLVGVTGSV 141
KG GVI ++ QV G + +TL++L + AR VTGSV
Sbjct: 60 EKGAAGVIASR----------QVFGPAVMVPDTLHALEKLGAAARERAPQARRGAVTGSV 109
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++ I L +L S ++NN +GV L+L + R AV E+GM+ EI
Sbjct: 110 GKTSVTQAIMAGL-TLAGPAHSSVKSYNNHIGVPLTLARMPRGTARAVFEIGMNHADEIR 168
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLE-DVARAKGEIFQESKLGDVCVLNADD---PLV 257
L+RM RP V+ VG H E+ E VARAK EIF+ + G V VLNAD+ L+
Sbjct: 169 PLSRMVRPHAVVITTVGPVHTENFPDGEAGVARAKAEIFEGLEPGGVAVLNADNRWFDLL 228
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
G FG CD RL+ QV G VQ L + + F I GLH +
Sbjct: 229 KGEAERAGATVRTFGTGEACDARLIDFQVPAGHAVVQARLHG--KALDFPILQTGLHWGL 286
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG---IKIVNDAYNANPISTR 374
N+ A + GV L +L +F P+ R R G +++++YNANPIS
Sbjct: 287 NSMAVLLMLEALGVDLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMA 346
Query: 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+AI L G+R+V L DMLELG H + A IDL+
Sbjct: 347 SAIATLGARETAGRRIVALTDMLELGPEAEAFHRGLAEPLEAAAIDLV 394
>gi|420202796|ref|ZP_14708384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM018]
gi|394268975|gb|EJE13520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM018]
Length = 451
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 200/383 (52%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKYSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + + D+PL+ ++ + + + G
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVNQVKNAKLISIGLNLDNTYTCHM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V N G+ + +KE + +P G H NA A A+ G++ + ++ N
Sbjct: 258 NDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E S + + ++NDAYNA+P S +AAID L G++++IL D+LELG
Sbjct: 313 QLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--GMKGRKILILADVLELGPNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ H+++ Y D ID++ G
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFG 393
>gi|30248990|ref|NP_841060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase protein
[Nitrosomonas europaea ATCC 19718]
gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase protein
[Nitrosomonas europaea ATCC 19718]
Length = 452
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 204/387 (52%), Gaps = 23/387 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC---NNWDKGFVQ 105
+ TD+R L P F A++G+ FD H FIS + ++ D G+++
Sbjct: 25 VSTDSRTLKPGD--LFIALSGEQFDGHRFISAAIENGAVTAMVSADTAILPTQPDFGWIK 82
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE-SLGV-NVFQ 163
V+ +T L +A R R++ LV VTGS GK+T K MIA G+ NV
Sbjct: 83 VK-----DTRLGLGQLAASWRR-RYTLPLVAVTGSNGKTTVKEMIAAIFRCEFGLENVLA 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN NN +GV L+ +D AV+EMGM+ GEI L+R+A P I V+ N G +H+E
Sbjct: 137 TTGNLNNDIGVPQMLLQLDSRHVGAVIEMGMNHAGEIAWLSRLAAPTIAVITNAGTAHIE 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVA 283
LG+ E +ARAKGEIF+ + V ++NADDP G R V G V+
Sbjct: 197 YLGTTEAIARAKGEIFEGLEEQGVAIINADDPHARLWRQLAGNRPVVDFSMNGTAA--VS 254
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
A+ G + +L+ + ++ + PG H NA AAAA AT G+S + + L +F
Sbjct: 255 ARQPAHPSGDRWLLQLPDDTIEITLQVPGRHNVYNALAAAAAATAAGISTSSIAEGLHSF 314
Query: 344 SPVQMRSELLVSRSGIK---IVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
V R L ++G+ +++D YNANP S +AA+++L ++ GK+++I+GDM ELG
Sbjct: 315 RGVPGR---LQKKTGLNRSVLIDDTYNANPDSMQAALNVLAEMP--GKKILIIGDMGELG 369
Query: 401 STERESHEKILSYCCDACIDLIGLVGD 427
+ H +I A +D++ +G+
Sbjct: 370 ADTATFHHRIGQQAASAGVDILLALGE 396
>gi|392957431|ref|ZP_10322954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
macauensis ZFHKF-1]
gi|391876394|gb|EIT84991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
macauensis ZFHKF-1]
Length = 459
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 193/383 (50%), Gaps = 19/383 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQ 105
I D+R PN + I G FD H F+ + G + + G + ++ F
Sbjct: 27 ITKDSRESLPNA--LYVPIKGDRFDGHRFVLQAME-NGAIASLWAEGTPIPSDLPADFPL 83
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ + L L + ++ V++GVTGS GK++TK MI A+ + ++
Sbjct: 84 IIVRDTIEALQQLAKLYL----NKVKPVVIGVTGSNGKTSTKDMIE-AVVATTFKTHKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D ++ +LEMGM+ GEI L+++A+P++ ++ N+G+SH+E L
Sbjct: 139 GNYNNHIGLPLTILSMDEGTEVIILEMGMNHFGEISLLSKLAQPDLAIITNIGESHIEFL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
GS E +A+AK EI K + +L+ D+PL+ ++ + + G+ + +V Q
Sbjct: 199 GSREGIAQAKLEIKDGLKESGLLILDGDEPLLQHV---KATNVLSCGYGEENTMTIVDQQ 255
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
G + E E + +P G H NA A AV + + + L +
Sbjct: 256 GDENGFSFGI----EGEGTTYYLPMLGTHNVKNATYAIAVGHYLNIEDSAINEGLKHLKM 311
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
MR E G ++NDAYNA+P S +AAI +K++ ++VV+LGDM ELG E
Sbjct: 312 TGMRLEKYEGLHGSLLINDAYNASPTSMKAAISAIKELKNYERKVVVLGDMYELGPDEEA 371
Query: 406 SHEKILSYCCDACIDLIGLVGDR 428
H + + D+I ++G++
Sbjct: 372 MHRSVAQSISEPITDVI-VIGEK 393
>gi|417912446|ref|ZP_12556138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU105]
gi|418622325|ref|ZP_13185077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU123]
gi|420186915|ref|ZP_14692939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM039]
gi|341650658|gb|EGS74474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU105]
gi|374826919|gb|EHR90794.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU123]
gi|394256881|gb|EJE01805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM039]
Length = 451
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 199/383 (51%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKHSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDITVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + + D+PL+ ++ + + + G
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVNQVKNAKLISIGLNSDSTYTCHM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V N G+ + +KE + +P G H NA A A+ G++ + ++ N
Sbjct: 258 NDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E S + + ++NDAYNA+P S +AAID L G++++IL D+LELG
Sbjct: 313 QLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGRKILILADVLELGPNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ H+++ Y D ID++ G
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFG 393
>gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
lovleyi SZ]
gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
lovleyi SZ]
Length = 462
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 208/393 (52%), Gaps = 22/393 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++T ++ +G+++ GP I TD+R + P + F + G FD H++++
Sbjct: 1 MFTPEQLTTITHGRLI--GPETASVSGISTDSRTIKPG--ELFIPLRGDRFDGHDYLNGL 56
Query: 82 LYGKGCVGVIGNQVCN-NW---DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
+ I +CN +W + + +TL +L ++A R RF+ ++GV
Sbjct: 57 TERR-----IQVSLCNESWLQHQQPPATLSCIAVRDTLRALGDLAAAFRK-RFALTMIGV 110
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGS GK+TTK M+A L+ + + ++ GN NN++G+ L + AVLEMGMS
Sbjct: 111 TGSNGKTTTKEMLAAILDQVDQGL-KTSGNLNNQIGLPQMLFQLKPEHCWAVLEMGMSEP 169
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA +A P I +VLN +HL+S+GS+E VA+AKGE+ Q + G + V+NADDP +
Sbjct: 170 GEIDRLAEIACPSIGIVLNAFPAHLQSMGSVEAVAQAKGELLQRIQDGGLAVVNADDPRI 229
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
A+L R+ FG +RG +VR A Q A G G L + ++ + + G H
Sbjct: 230 ASLHQNPSARRTSFGIKRG-EVRAEAVQ-AIGTEGQAFKLVTPKGSIELRLKALGQHNIY 287
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
NA AAAA V L + L F P R L + +++D+YNANP S AA+
Sbjct: 288 NALAAAAGLLEL-VGLETIAEGLEAFVPYTGRFHLETLSNNRLLIDDSYNANPASCAAAL 346
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L+ I N + V LGDMLELG E E H ++
Sbjct: 347 ATLQGIKGNRRAFVALGDMLELGRDELELHRQL 379
>gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis W23144]
gi|418327552|ref|ZP_12938705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis 14.1.R1.SE]
gi|418632424|ref|ZP_13194855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU128]
gi|420174250|ref|ZP_14680703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM061]
gi|420193515|ref|ZP_14699366.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM023]
gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis W23144]
gi|365232910|gb|EHM73885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis 14.1.R1.SE]
gi|374832331|gb|EHR96046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU128]
gi|394245184|gb|EJD90501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM061]
gi|394259782|gb|EJE04613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM023]
Length = 451
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 204/395 (51%), Gaps = 20/395 (5%)
Query: 35 SVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCV-GVIG 92
++ K LK G+ D+R + N+ F G++ D H FI+ L G G V
Sbjct: 16 EIDEKYLKETINGV-SIDSREI--NEGSLFIPFKGENVDGHRFITQALNDGAGAVFSEKE 72
Query: 93 NQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIAL 152
N+ + VE +TL +L +A N + ++ VTGS GK+TTK MI
Sbjct: 73 NRYSEEIQGPIIWVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIES 126
Query: 153 ALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIR 212
L S V ++ GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I
Sbjct: 127 VL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPDIA 185
Query: 213 VVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFF 271
++ N+G+SH++ LGS E +A+AK EI K + + + D+PL+ ++T + + +
Sbjct: 186 IITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVTQVKDAKLISI 245
Query: 272 GWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGV 331
G V N G+ + +KE + +P G H NA A A+ G+
Sbjct: 246 GLNSDNTYTCHMNDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHELGL 300
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
+ + ++ N MR E S + + ++NDAYNA+P S +AAID L G++++
Sbjct: 301 NETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGRKIL 358
Query: 392 ILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
IL D+LELG + H+++ Y D ID++ G
Sbjct: 359 ILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFG 393
>gi|353328190|ref|ZP_08970517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
endosymbiont wVitB of Nasonia vitripennis]
Length = 458
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 207/408 (50%), Gaps = 21/408 (5%)
Query: 27 WTINEIAESVNGK---ILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
W N I ++ G+ + I TDTR + K F A+ G+ FD H+F+ E +
Sbjct: 4 WNANNIIDATGGRGEGVCNSVYSSNISTDTRSIK--KGDLFIALKGKKFDGHDFLH-EAF 60
Query: 84 GKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGSV 141
KG V V+ N+ VQ +TL +L NMA Y RN + ++ +TGSV
Sbjct: 61 LKGAVAAVVSEDKYRNFPLIIVQ-------DTLKALHNMASYYIRNVLVNAKVITITGSV 113
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L G + + + N NN +G+ +++ + + +LEMGM+ GEI
Sbjct: 114 GKTTTKDMLHTVLSQYGAS-YANKDNLNNNIGLPFTILKVPKNCQYLILEMGMNRAGEIK 172
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
EL++++ P+I V+ N+ +H+E+ SL D+A+AK E+ K VLN D+ L
Sbjct: 173 ELSKISNPDIAVITNIEPAHVENFSSLLDIAQAKLEVLCGMKNNGTLVLNKDNKHYDYLL 232
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
V FG VRL+ + G+ +++ +++ + G H +A
Sbjct: 233 SNADRNVVSFGKNESATVRLLDLIRNDSGINLKIK-PHNGQIINCNLRLRGEHFTYSALV 291
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG---IKIVNDAYNANPISTRAAID 378
AV G+ L+++ ++L NF+ + R + ++ + ++ND+YNANP S +AAI
Sbjct: 292 VTAVVQSLGLDLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIR 351
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L + N ++V +LGDMLELG+ H ++L + ++ + VG
Sbjct: 352 TLGTYS-NLRKVALLGDMLELGNESIVFHTELLDSIVEQNVNKVHTVG 398
>gi|416128219|ref|ZP_11597224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus epidermidis FRI909]
gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus epidermidis FRI909]
Length = 451
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 204/398 (51%), Gaps = 29/398 (7%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCV-G 89
+ E++NG + D+R + N+ F G++ D H FI+ L G G V
Sbjct: 22 LKETING----------VSIDSREI--NEGSLFIPFKGENVDGHRFITQALNDGAGAVFS 69
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
N+ + VE +TL +L +A N + ++ VTGS GK+TTK M
Sbjct: 70 EKENRYSEEIQGPIIWVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDM 123
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
I L S V ++ GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P
Sbjct: 124 IESVL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQP 182
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRK 268
+I V+ N+G+SH++ LGS E +A+AK EI K + + + D+PL+ ++T + +
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVTQVKDAKL 242
Query: 269 VFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATL 328
+ G V N G+ + +KE + +P G H NA A A+
Sbjct: 243 ISIGLNSDNTYTCHMNDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHE 297
Query: 329 FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK 388
G++ + ++ N MR E S + + ++NDAYNA+P S +AAID L G+
Sbjct: 298 LGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGR 355
Query: 389 RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+++IL D+LELG + H+++ Y D ID++ G
Sbjct: 356 KILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFG 393
>gi|260893416|ref|YP_003239513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
degensii KC4]
gi|260865557|gb|ACX52663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
degensii KC4]
Length = 464
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 213/403 (52%), Gaps = 18/403 (4%)
Query: 32 IAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
+AE + ++++ P I+ TDTR P + FFA+ G+ F+ H F++ E KG +
Sbjct: 9 LAEIMEARLIRGSPDRIVRAVFTDTREEIP-EGALFFALKGERFNGHHFVA-EAGAKGAL 66
Query: 89 GVIGNQVCNN-WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLVGVTGSVGKSTT 146
G + +++ F+ +E + L +L +A Y R R +G L+GVTGS GK+TT
Sbjct: 67 GAVVSRLPEQPLPPDFLILE---VTDVLAALQRLAHYVR--RATGPFLIGVTGSTGKTTT 121
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K ++A L ++ V + GN NN +GV L+L+ + + AV+EM M G+GEI L+ +
Sbjct: 122 KDLLAAVL-AVRHRVLATRGNRNNEIGVPLTLLELGPEHEFAVVEMAMRGEGEIAALSAL 180
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
A P V+ N+G++HLE LGS+ +ARAKGEI VL A+ P +
Sbjct: 181 AEPNAAVITNIGEAHLERLGSVRAIARAKGEILDYIPPEGFAVLPAESPFIEEEARRCRG 240
Query: 267 RKVFFGWRRGCDVRLVA-AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
+ ++FG VRL++ + G +V E ++ +P PG H A+N A A+
Sbjct: 241 KVIYFGESDKAQVRLLSYTSLGEKGCVFRVRTATGEE--EYQLPLPGYHNALNCTAVIAI 298
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
A G S +V MR E+ R G ++NDAYNANP S A+++L ++
Sbjct: 299 ARQLGFSPEEVQEGFRRVQTSGMRLEIEHWR-GFTVINDAYNANPASMAGALEVLAELGK 357
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
++V +LGDMLELG +H ++ A DL+ +VG+R
Sbjct: 358 GRRKVAVLGDMLELGERTVAAHREVGEKAA-AVADLLVVVGER 399
>gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Sinorhizobium medicae WSM419]
gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Sinorhizobium medicae WSM419]
Length = 477
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 209/415 (50%), Gaps = 25/415 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GI I D+R + + FFAI G D H++ L
Sbjct: 4 LWTSSDLLGAMNGRPVGNLPEGITGISIDSRTI--GNGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + V+ + L +++ + C AR+ R + ++ VTGS
Sbjct: 62 NGAALLVVSEAKLPALGRLIAPMIVVD-----DVLEAMIRLGCAARD-RSAAKIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L LG V S ++NN GV L+L + D V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHMLSPLG-RVHASVASFNNHWGVPLTLARMPETTDYGVFEIGMNHAGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L RM RP + VV ++ +HL + SL+D+A AK EIF+ G V+N D L+
Sbjct: 175 RPLTRMVRPHVAVVTSIAAAHLGNFASLDDIAAAKAEIFEGVVNGGHAVINRDSAQYELL 234
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
GV V FFG + RL A+ A G G + ++ I +PG H+A
Sbjct: 235 EKAAATAGVSHVHFFGANPKSEFRL--AEFAGGAEGSVLWAGVGGRTLEIAIGAPGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA AA A ATL G +V SL+ P + +R L + + +++++YNANP S
Sbjct: 293 ENALAAIAAATLAGADTDRVAASLATMQPEKGRGLRHRLRMGAGYMTLIDESYNANPASM 352
Query: 374 RAAIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
RAAI LL+D + G+R+ ILGDMLE+G H + DA I + L G
Sbjct: 353 RAAITLLRDAEPSPGGRRIAILGDMLEMGEHSAAVHAALARPIVDAGIADVWLTG 407
>gi|345021957|ref|ZP_08785570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Ornithinibacillus scapharcae TW25]
Length = 452
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 195/386 (50%), Gaps = 20/386 (5%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVC-NNWDKGFVQV 106
TD+R+ ++ F I G++FD H+F+ + Y G + + N+V K F+
Sbjct: 29 MTDSRL--KTEDSLFIPIVGENFDGHDFLM-QAYENGAIATLWQDNKVLPEALPKDFIVF 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIA-LALESLGVNVFQSY 165
L L CY +++GVTGS GK+TTK ++A +A E + +
Sbjct: 86 SVKDTTKALQHLA--GCY--RDEIKPIVIGVTGSNGKTTTKDIVATIAKEKYKTHY--TD 139
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN G+ +++ + + ++ VLEMGMS GEI L+ +A+P+ ++ N+G+SH+E L
Sbjct: 140 GNLNNEFGLPFTILSMSKDTEVLVLEMGMSSFGEIELLSNIAKPDYAIITNIGESHIEYL 199
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
GS E +A+AK EI +++ D+ L++++ V +V FG D + ++
Sbjct: 200 GSREGIAKAKLEITSGMDQNGKLIIDGDEILLSHVHQQENVVRVGFGE----DNDFIVSE 255
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
+ L + K + + IP G H A NA + L G+ + +L +
Sbjct: 256 IE---LKQNATVFKGSDHSTYTIPVLGSHNAKNAAYGIVLGRLLGIDSESIKHALEHLKL 312
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
MR E L ++ + I+NDAYNA+P S AAI +++ ++ +V +LGD+ ELG RE
Sbjct: 313 TGMRFETLTGKNDVSIINDAYNASPTSMMAAIQVVQQMSGFVNKVAVLGDIYELGEKSRE 372
Query: 406 SHEKILSYCCDACIDLIGLVGDRVVV 431
HE + D+ L + D +V+
Sbjct: 373 LHEVVAEVMNDSITHLYTVGEDSIVI 398
>gi|418614613|ref|ZP_13177576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU118]
gi|374819503|gb|EHR83625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU118]
Length = 451
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 204/398 (51%), Gaps = 29/398 (7%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCV-G 89
+ E++NG + D+R + N+ F G++ D H FI+ L G G V
Sbjct: 22 LKETING----------VSIDSREI--NEGSLFIPFKGENVDGHRFITQALNDGAGAVFS 69
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
N+ + VE +TL +L +A N + ++ VTGS GK+TTK M
Sbjct: 70 EKENRYSEEIQGPIIWVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDM 123
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
I L S V ++ GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P
Sbjct: 124 IESVL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQP 182
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRK 268
+I V+ N+G+SH++ LGS E +A+AK EI K + + + D+PL+ ++T + +
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKFEITAGLKTNGIFIYDGDEPLLKPHVTQVKDAKL 242
Query: 269 VFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATL 328
+ G V N G+ + +KE + +P G H NA A A+
Sbjct: 243 ISIGLNSDNTYTCHMNDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHE 297
Query: 329 FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK 388
G++ + ++ N MR E S + + ++NDAYNA+P S +AAID L G+
Sbjct: 298 LGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGR 355
Query: 389 RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+++IL D+LELG + H+++ Y D ID++ G
Sbjct: 356 KILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFG 393
>gi|387927980|ref|ZP_10130658.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus methanolicus PB1]
gi|387587566|gb|EIJ79888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus methanolicus PB1]
Length = 461
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 197/380 (51%), Gaps = 14/380 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ D+R + K F G++ D H F+ + KG + + N D + V
Sbjct: 30 VAIDSRKIK--KGNLFIPFKGENTDGHRFVEDAI-KKGAAAALWQKDVPNPPLDLPVLIV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL +L +A RN + +VG+TGS GK+TTK M A L S+ V ++ G
Sbjct: 87 E-----DTLRALQELARSYRN-ELNIKIVGITGSNGKTTTKDMTANLL-SIKYKVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ I ++AVLEMGMSG+GEI L ++ARP ++ N+G+SHL LG
Sbjct: 140 NFNNHIGLPLTVLSIKPETEMAVLEMGMSGRGEIEFLTKLARPNAVIITNIGESHLLDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
S E +A AK EI + + G + V + D+PL+ V + R L ++
Sbjct: 200 SREAIADAKLEIIKGLEEGGLIVYHGDEPLLKERLKNFSGNAVLKTFGRSERNDLYPIEI 259
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + + E+ F +P G H +NA AA A FG+ ++ N
Sbjct: 260 RQCDKGNEFKINSSAEV--FSLPVLGTHNVLNALAAMLAADYFGIPFEKMNEGFLNLKLT 317
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR E++ ++G KI+NDAYNA+P S AA++++ +++ ++++LGDMLELG E +
Sbjct: 318 NMRMEIVEGKNGEKIINDAYNASPTSMNAAVEIVSNLSGYKNKILVLGDMLELGPQEEQF 377
Query: 407 HEKILSYCCDACIDLIGLVG 426
H + + +D + G
Sbjct: 378 HYNVGANLNPGKVDFVFTYG 397
>gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis M23590]
gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis M23590]
Length = 452
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 187/381 (49%), Gaps = 14/381 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + P F G+H D H F+ + Q D +
Sbjct: 29 VTIDSRAVQPQ--MLFIPFKGEHVDGHHFVKQSIQDGAAAAFY--QTGQEIDSSLEEQPL 84
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L +A N V + VTGS GK+TTK MI L++ V ++ GN+
Sbjct: 85 IYVSDTLTALQQLAKAYLNYVQPKV-IAVTGSNGKTTTKDMIESVLKT-QFKVKKTQGNY 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ +D DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LGS
Sbjct: 143 NNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSR 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+A+AK EI K + + + D+PL+ ++ + + + G +
Sbjct: 203 AGIAKAKSEIVTGLKDNGIFIYDGDEPLLQPHVAQVKHAKLISVGLEQNNTYVCTIDSNQ 262
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
N G+ + + +P G+H NA A AV G+S + ++ +
Sbjct: 263 NDGIAFNI-----NNTEHYELPILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQLTG 317
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
MR E V+ I ++NDAYNA+P S +A+ID L ++ G++++IL D LELG + H
Sbjct: 318 MRMERHVTEQQITVINDAYNASPTSMKASIDTLSNM--EGRKILILADCLELGDNSQHMH 375
Query: 408 EKILSYCCDACIDLIGLVGDR 428
E+I Y + ID + G+
Sbjct: 376 EEIGEYLKNKNIDELYTFGEE 396
>gi|420186292|ref|ZP_14692363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM040]
gi|394252509|gb|EJD97541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM040]
Length = 451
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 200/383 (52%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N + +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKYSEGNQGPTI 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + + D+PL+ ++ + + + G
Sbjct: 198 LGSREGIAKAKFEITTGLKTDGIFIYDGDEPLLKPHVNQVKNAKLISIGLNSDNTYTCHM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V N G+ + +KE + +P G H NA A A+ G++ + ++ N
Sbjct: 258 NDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E S + + ++NDAYNA+P S +AAID L G++++IL D+LELG
Sbjct: 313 QLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGRKILILADVLELGPNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ H+++ Y D ID++ G
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFG 393
>gi|451949063|ref|YP_007469658.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfocapsa sulfexigens DSM 10523]
gi|451908411|gb|AGF80005.1| UDP-N-acetylmuramyl-tripeptide
synthetase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
alanine ligase [Desulfocapsa sulfexigens DSM 10523]
Length = 1025
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 201/395 (50%), Gaps = 24/395 (6%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCNNWDKGFVQ 105
G I TD+R + P F A+ G+ FD H+++ + G GC ++ ++ VQ
Sbjct: 571 GFIRTDSRTIQPA--DIFVALKGERFDGHDYVGQVVTAGAGCC-IMERLPESSLSVPVVQ 627
Query: 106 VEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVTGSVGKSTTKSMIALAL-------- 154
V+ +T +L ++A Y R + ++ +TGS GK+T K M A
Sbjct: 628 VK-----DTTRALGDLARYRRACMKELSAPDVIAITGSSGKTTVKEMSAAIFKEKWPERA 682
Query: 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV 214
++ V ++ GN+NN +G+ LSL+ + + +LEMGM+ GEI L +A P+I V
Sbjct: 683 DAPSARVLKTEGNFNNLIGLPLSLLPLSPKHKVVILEMGMNAPGEIARLTEIADPDIACV 742
Query: 215 LNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGW- 273
LNV +HL+ LG +E VARAK E+FQ S G + V+N DDP V K+ FG
Sbjct: 743 LNVHGAHLQGLGDIEGVARAKAELFQGSGKGTILVVNGDDPRVVKAAESCSQEKIVFGMV 802
Query: 274 RRGCDVRLVAAQVANGG--LGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGV 331
G V V A G + VL + + + G H NA AAAA+AT GV
Sbjct: 803 DNGPGVPDVYATDCRTGDRENLSFVLHVHDQEILVTLQVAGAHNISNALAAAAIATAAGV 862
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
+ +G LS F P + R +++ SG +I+ND YNANP S +A I L+++ G R+
Sbjct: 863 DIQYIGDGLSAFKPTERRMQIVDGPSGSRIINDTYNANPESMKAGIATLQELG-GGTRIA 921
Query: 392 ILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+LGDMLELG H I A ID + ++G
Sbjct: 922 VLGDMLELGPNSAALHRGIGEVVATAGIDFLAVLG 956
>gi|389818138|ref|ZP_10208579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Planococcus antarcticus DSM 14505]
gi|388464070|gb|EIM06406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Planococcus antarcticus DSM 14505]
Length = 452
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 179/325 (55%), Gaps = 23/325 (7%)
Query: 117 SLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL 176
+L MA R+ S +++G+TGS GK++TK ++A L+ V ++ GN+NN +G+ L
Sbjct: 88 ALQEMARAYRD-ELSAIVIGITGSNGKTSTKDLVASVLKPY-FKVQKTPGNFNNELGLPL 145
Query: 177 SLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKG 236
+++ +D +AVLEMGMSGKG+I L+ +ARP+ ++ N+G++HL+ LGS + +A AK
Sbjct: 146 TILSLDEDTKVAVLEMGMSGKGQIEFLSELARPDYAIITNIGEAHLQDLGSRKAIAEAKF 205
Query: 237 EIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQ 294
EI + + D+PL+ P+GV FG+ ++ + + G
Sbjct: 206 EITAGLQPHGKLFYDGDEPLLQPFMENFPQGVS---FGFDDNNELTVTDIKATENGSSFM 262
Query: 295 V--VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
V +++ F IP G H N AA +A G+S Q+ SL + + MR ++
Sbjct: 263 VSGIID-----AAFTIPVLGEHQVKNTLAAILIALESGLSEEQIRKSLKDAALTDMRMQM 317
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
+ + +G +NDAYNA P S AA++ +++ K+ V+LGDMLELG E+ HE +
Sbjct: 318 IQADNGAIFINDAYNAAPSSMNAALNFIRETTMKEKKWVVLGDMLELGDDEQSYHEALSK 377
Query: 413 YCCDACIDLIG--LVGDRVVVQCKW 435
Y + +L+G L G R+ KW
Sbjct: 378 YISE---NLMGVCLYGPRM----KW 395
>gi|420178511|ref|ZP_14684841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM057]
gi|420181305|ref|ZP_14687508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM053]
gi|420200773|ref|ZP_14706413.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM031]
gi|394246234|gb|EJD91495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM057]
gi|394246653|gb|EJD91907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM053]
gi|394267517|gb|EJE12104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM031]
Length = 451
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 204/398 (51%), Gaps = 29/398 (7%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCV-G 89
+ E++NG + D+R + N+ F G++ D H FI+ L G G V
Sbjct: 22 LKETING----------VSIDSREI--NEGSLFIPFKGENVDGHRFITQALNDGAGAVFS 69
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
N+ + VE +TL +L +A N + ++ VTGS GK+TTK M
Sbjct: 70 EKENRYSEEIQGPIIWVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDM 123
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
I L S V ++ GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P
Sbjct: 124 IESVL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQP 182
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRK 268
+I V+ N+G+SH++ LGS E +A+AK EI K + + + D+PL+ ++T + +
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVTQVKDAKL 242
Query: 269 VFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATL 328
+ G V N G+ + +KE + +P G H NA A A+
Sbjct: 243 ISIGLNSDNTYTCHMNDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHE 297
Query: 329 FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK 388
G++ + ++ N MR E S + + ++NDAYNA+P S +AAID L G+
Sbjct: 298 LGLNETIIRNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGR 355
Query: 389 RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+++IL D+LELG + H+++ Y D ID++ G
Sbjct: 356 KILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFG 393
>gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
aggregata IAM 12614]
gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
aggregata IAM 12614]
Length = 476
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 202/416 (48%), Gaps = 30/416 (7%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
+ P+WT++ E+ G++ G G I D+R L P F AITG D H+++
Sbjct: 2 SDPLWTLDAFVEAAGGRL--QGDAGAEITGISIDSRTLEPG--DAFVAITGDRLDGHDYV 57
Query: 79 SPELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
+ V ++G + D +V V+ + L +L + AR+ R + +V
Sbjct: 58 VSAMEAGASVALVGEDRLPDLPADGRYVVVD-----DPLEALRKIGVAARD-RSNARIVA 111
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+ TK + L L G V S ++NN GV L+L + D V E+GM+
Sbjct: 112 VTGSVGKTGTKEALRLTLAESG-KVHASVASFNNHWGVPLTLARMPADADFGVFEIGMNH 170
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD-- 254
GEI L +M RP + ++ V HL+ S+E +A+AK EIF + G + +LN D+
Sbjct: 171 AGEISPLVKMVRPHVVIITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPGGIAILNKDNLQ 230
Query: 255 -PLVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQV-VLEKEREMVKFVIPSP 311
L+ L GV K+ FG D L A G V +L +E + + I +
Sbjct: 231 FDLLKFLAAAAGVSKIHTFGEDLSADSHLQKAVSYPAGSSVDACILGQE---ITYKIGAS 287
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE---LLVSRSGIKIVNDAYNA 368
G H N+ A G LA+ G++L + R E L + + +++++YNA
Sbjct: 288 GKHHVKNSLAVLTAVVDLGADLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNA 347
Query: 369 NPISTRAAIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
NP S +AA+ +L + + G+R+ ++GDM ELGS H ++L DA ID +
Sbjct: 348 NPASMKAALAVLGEAPVTRPGRRIAVIGDMRELGSDADRLHAELLQPITDANIDAV 403
>gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus epidermidis ATCC 12228]
gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis RP62A]
gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis M23864:W2(grey)]
gi|417660266|ref|ZP_12309855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU045]
gi|417908981|ref|ZP_12552731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU037]
gi|418607552|ref|ZP_13170782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU057]
gi|418613179|ref|ZP_13176195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU117]
gi|418617964|ref|ZP_13180850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU120]
gi|418627611|ref|ZP_13190183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU126]
gi|418629973|ref|ZP_13192466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU127]
gi|420166529|ref|ZP_14673213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM088]
gi|420171688|ref|ZP_14678223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM070]
gi|420173609|ref|ZP_14680100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM067]
gi|420195900|ref|ZP_14701684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM021]
gi|420198022|ref|ZP_14703740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM020]
gi|420207904|ref|ZP_14713389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM008]
gi|420210263|ref|ZP_14715692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM003]
gi|420212519|ref|ZP_14717868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM001]
gi|420215195|ref|ZP_14720466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH05005]
gi|420216700|ref|ZP_14721898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH05001]
gi|420223685|ref|ZP_14728580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH08001]
gi|420230942|ref|ZP_14735619.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH04003]
gi|420235978|ref|ZP_14740509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH051475]
gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus epidermidis ATCC 12228]
gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis RP62A]
gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis M23864:W2(grey)]
gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU045]
gi|341654621|gb|EGS78360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU037]
gi|374404406|gb|EHQ75380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU057]
gi|374816615|gb|EHR80816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU117]
gi|374817225|gb|EHR81411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU120]
gi|374829057|gb|EHR92871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU126]
gi|374832492|gb|EHR96202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU127]
gi|394233536|gb|EJD79137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM088]
gi|394236803|gb|EJD82306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM070]
gi|394239646|gb|EJD85081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM067]
gi|394262501|gb|EJE07263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM021]
gi|394264953|gb|EJE09619.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM020]
gi|394274924|gb|EJE19319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM008]
gi|394276497|gb|EJE20835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM003]
gi|394279640|gb|EJE23943.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM001]
gi|394282475|gb|EJE26668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH05005]
gi|394287183|gb|EJE31150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH08001]
gi|394291379|gb|EJE35191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH05001]
gi|394295825|gb|EJE39461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH04003]
gi|394301614|gb|EJE45069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIH051475]
Length = 451
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 199/383 (51%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKHSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + + D+PL+ ++ + + + G
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVNQVKNAKLISIGLNSDSTYTCHM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V N G+ + +KE + +P G H NA A A+ G++ + ++ N
Sbjct: 258 NDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E S + + ++NDAYNA+P S +AAID L G++++IL D+LELG
Sbjct: 313 QLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGRKILILADVLELGPNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ H+++ Y D ID++ G
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFG 393
>gi|417646906|ref|ZP_12296758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU144]
gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU144]
Length = 451
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 199/383 (51%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKHSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + + D+PL+ ++ + + + G
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVNQVKNAKLISIGLNSDSTYTCHM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V N G+ + +KE + +P G H NA A A+ G++ + ++ N
Sbjct: 258 NDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E S + + ++NDAYNA+P S +AAID L G++++IL D+LELG
Sbjct: 313 QLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGRKILILADVLELGPNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ H+++ Y D ID++ G
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFG 393
>gi|410658125|ref|YP_006910496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Dehalobacter sp. DCA]
gi|410661115|ref|YP_006913486.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Dehalobacter sp. CF]
gi|409020480|gb|AFV02511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Dehalobacter sp. DCA]
gi|409023471|gb|AFV05501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Dehalobacter sp. CF]
Length = 469
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 208/416 (50%), Gaps = 29/416 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+W +AE + GK+ +G D+R A ++ F AI G+ D H FI+
Sbjct: 1 MWNSGTMAEILGGKL--YGSASTYFKGCVIDSR--AASEGVLFAAIRGEKTDGHLFINKA 56
Query: 82 LYGKGCVGVIGNQVCNNW-------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVL 134
G + + + + DK + V+ +TL +L ++A R + V+
Sbjct: 57 FQGGASIALAETRSLEEYGLPVIPADKAIIAVK-----DTLLALQDLARAWRET-LDPVV 110
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+G+TGS GK+TTK M A L + V ++ N NN +G+ L+++ +I VLEMGM
Sbjct: 111 IGITGSCGKTTTKDMTAAVL-AKSFKVHKNLENHNNEIGLPLTILNAPAGTEIMVLEMGM 169
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
G G+I L + P + V+ N+G +HLE LGS E++A+AK E+ G + VLNA+D
Sbjct: 170 RGLGQIRALCDICSPSVAVITNIGTTHLELLGSQENIAKAKWELVAALSEGGIAVLNAED 229
Query: 255 PLVANLTVPRGVRKVFFGWR-RGCDVRLVAAQVANGGLGV---QVVLEKEREMVKFVIPS 310
N V+KVF+G + + A + + G +VV ++R V+ +P
Sbjct: 230 AFSVNKAAAADVKKVFYGISGKYASPDVYAVNIHSSGTLTTCFEVVSGEDRAEVR--LPL 287
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
PG H ++A AA +V GVSLA+ +L +MR E+ G I+ND YNANP
Sbjct: 288 PGEHNVLDALAALSVGLAKGVSLAEGAKALEELELSKMRLEIQQGVFGSTIINDVYNANP 347
Query: 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
S +A++ +L + K + +LG+M ELG + H+ + + I+ + VG
Sbjct: 348 TSVKASLRVLAERG-GAKTIAVLGEMYELGDSAVTGHQDVGRAAAELGINTLITVG 402
>gi|418633624|ref|ZP_13196032.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU129]
gi|420190986|ref|ZP_14696923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM037]
gi|420204909|ref|ZP_14710447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM015]
gi|374838962|gb|EHS02495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU129]
gi|394258084|gb|EJE02976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM037]
gi|394271630|gb|EJE16119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis NIHLM015]
Length = 451
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 204/398 (51%), Gaps = 29/398 (7%)
Query: 32 IAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCV-G 89
+ E++NG + D+R + N+ F G++ D H FI+ L G G V
Sbjct: 22 LKETING----------VSIDSREI--NEGSLFIPFKGENVDGHRFITQALNDGAGAVFS 69
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
N+ + VE +TL +L +A N + ++ VTGS GK+TTK M
Sbjct: 70 EKENRYSEEIQGPIIWVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDM 123
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
I L S V ++ GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P
Sbjct: 124 IESVL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQP 182
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRK 268
+I V+ N+G+SH++ LGS E +A+AK EI K + + + D+PL+ ++T + +
Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVTQVKHAKL 242
Query: 269 VFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATL 328
+ G V N G+ + +KE + +P G H NA A A+
Sbjct: 243 ISIGLNSDNTYTCHMNDVKNEGIHF-TINQKEH----YHLPILGTHNMKNAAIAIAIGHE 297
Query: 329 FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK 388
G++ + ++ N MR E S + + ++NDAYNA+P S +AAID L G+
Sbjct: 298 LGLNETIIQNNIHNVQLTAMRMERHESSNKVTVINDAYNASPTSMKAAIDTLS--VMKGR 355
Query: 389 RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+++IL D+LELG + H+++ Y D ID++ G
Sbjct: 356 KILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFG 393
>gi|372486937|ref|YP_005026502.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dechlorosoma suillum PS]
gi|359353490|gb|AEV24661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Dechlorosoma suillum PS]
Length = 469
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 138/409 (33%), Positives = 213/409 (52%), Gaps = 23/409 (5%)
Query: 31 EIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
E+A + NG +G G + TD+R + + + F A+ G+ FD HE+++ C
Sbjct: 6 EVARATNGT--AYGSNVLFGGVSTDSRSV--GRGELFVALRGERFDGHEYLAQAGERGAC 61
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
V+ +G V + +T +L +A Y R ++FS L+ VTGS GK++TK
Sbjct: 62 AAVVAVDTVEQL-QGKVSLPLVAVADTRLALGALAGYWR-AKFSLPLIAVTGSNGKTSTK 119
Query: 148 SMIALALESLGV--------NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
MIA L++ V V + GN+NN +G+ L+L+ + V+EMGM+ GE
Sbjct: 120 EMIASILQAQAVLDGYDPAMVVLATQGNFNNDIGLPLTLLKLRTTHRSGVIEMGMNHPGE 179
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L R+A+P + +V N +HLE +G L+ VA K I+ K G V +++ADD A
Sbjct: 180 IGYLTRLAQPTVALVTNAQRAHLEGMGDLQQVAEEKATIYAGLKPGGVALVSADDAFAAY 239
Query: 260 LT-VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
V R V FG + D V +V GL ++ L + + PGLH A N
Sbjct: 240 WKGVNERRRVVTFGLDKPAD---VGGKVQLHGLETRIDLTSPKGNAAIRLRVPGLHNARN 296
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AAAA A G+SLA V L +F V+ R + + +G I++D YNANP S RA ID
Sbjct: 297 AVAAAAAALAGGISLAAVVGGLESFRGVKGRLQQRQAAAGAVILDDTYNANPDSVRAGID 356
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+L A G+++++LGDM E+G+ + H++I Y +D + +G+
Sbjct: 357 VLA--ATVGRKILVLGDMGEIGAMSGQYHDEIGGYAKSQGVDQLHCLGE 403
>gi|427707215|ref|YP_007049592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nostoc
sp. PCC 7107]
gi|427359720|gb|AFY42442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nostoc
sp. PCC 7107]
Length = 453
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 131/368 (35%), Positives = 200/368 (54%), Gaps = 34/368 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTRIL P + F A+ G++FD H+FI P GK + I + N D +QV+
Sbjct: 33 IQTDTRILQPG--EVFLALRGENFDGHDFI-PTAIGKSALAAIVDFDYENSDFPVLQVK- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + +A + R+ RF ++GVTGSVGK+TTK +I L + G V ++YGN+
Sbjct: 89 ----NTLAAYQTIARWWRD-RFDIPVIGVTGSVGKTTTKELITAVLSTQG-RVHKTYGNF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ +D + AV+EM M GKG+I EL + RP I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELDAEHNYAVIEMAMRGKGQIAELTHIVRPTIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+A AK E+ E V +LN D+PL+ +KV+ G ++ ++
Sbjct: 203 AAIAEAKCELLAEMPHDGVAILNHDNPLLIAT-----AKKVWSG-------EVLTYGLSG 250
Query: 289 GGLGVQVVLEKEREM--VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + ++ + E+ +K +P G H A N AA AVA + G+ + +L++ V
Sbjct: 251 GDISGNLIDSETIEVAGIKLPLPLAGRHNATNFLAALAVAKVLGIDWS----TLTDGVTV 306
Query: 347 QM---RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGST 402
M RS+ + + +++ YNA P + AA+ LL D GKR + +LG M ELG
Sbjct: 307 DMPTGRSQRYTLPNDVVFLDETYNAAPEAMLAALQLLAD--TPGKRKIAVLGAMKELGER 364
Query: 403 ERESHEKI 410
+ H+K+
Sbjct: 365 SPQLHQKV 372
>gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
gi|224953884|gb|EEG35093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium hallii DSM 3353]
Length = 490
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 210/416 (50%), Gaps = 36/416 (8%)
Query: 28 TINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
TI +I E+ +G++L +I D+R + +++ F I G+ DAH+FI
Sbjct: 28 TIKDIVEACSGQLLCGDENKVIKEFSIDSR--SGSEDSIFVPIIGERVDAHKFID----- 80
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGN------VNTLNSLVNMACYARNSRFSGVLVGVT 138
G + + G + D+ +EG N +T+ ++ + + RN R + +V VT
Sbjct: 81 -GALKINGATFTSEHDE---PLEGFENKPWIKVADTVEAMQKVGTFYRN-RMNLPVVAVT 135
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TT+ MI+ L S VFQ+ GN N+++GV L+L + R +IAVLE+GMS +G
Sbjct: 136 GSVGKTTTREMISTVLASQK-KVFQTIGNQNSQIGVPLTLSHLTREDEIAVLEIGMSERG 194
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
+I +L M RP + VV +G SH+ L + E++ K +I + + LN DD +A
Sbjct: 195 QIEKLTNMIRPNVAVVTMIGVSHIAQLKTQENICLEKMDIVKGLPEDGMVFLNGDDKFLA 254
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE---KEREMVK---FVIPSPG 312
+ F+G + CD R V +G Q + KE ++VK V+ + G
Sbjct: 255 PYRGKLSHKTFFYGMDKACDYRAENVHVKDG----QTIFHFFYKEGKVVKDMEVVLGTMG 310
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H NA A VA G+ + +L F + + L S + +++D YNA+P S
Sbjct: 311 EHNVRNALVALGVAHQMGLDMKAAAKALVTFHGQRQQMHTLKSCT---LIDDTYNASPDS 367
Query: 373 TRAAIDLLKDI-ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+A++ +L + G+R+ L DMLELG ERE H ++ + +D + G+
Sbjct: 368 MKASVSVLSSMEGVKGRRIAALADMLELGEKEREYHYEVGKFIAGTQVDEVAAYGE 423
>gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis HKU09-01]
gi|385783929|ref|YP_005760102.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus lugdunensis N920143]
gi|418415252|ref|ZP_12988458.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis HKU09-01]
gi|339894185|emb|CCB53450.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus lugdunensis N920143]
gi|410875259|gb|EKS23184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 452
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 187/381 (49%), Gaps = 14/381 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + P F G+H D H F+ + Q D +
Sbjct: 29 VTIDSRAVQPQ--MLFIPFKGEHVDGHRFVKQSIQDGAAAAFY--QTGQEIDSSLEEQPL 84
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L +A N V + VTGS GK+TTK MI L++ V ++ GN+
Sbjct: 85 IYVSDTLTALQQLAKAYLNYVQPKV-IAVTGSNGKTTTKDMIESVLKT-QFKVKKTQGNY 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+++ +D DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LGS
Sbjct: 143 NNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSR 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+A+AK EI K + + + D+PL+ ++ + + + G +
Sbjct: 203 AGIAKAKSEIVTGLKDNGIFIYDGDEPLLQPHVAQVKHAKLISVGLEQHNTYVCTIDSNQ 262
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
N G+ + + +P G+H NA A AV G+S + ++ +
Sbjct: 263 NDGIAFNI-----NNTEHYELPILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQLTG 317
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
MR E V+ I ++NDAYNA+P S +A+ID L ++ G++++IL D LELG + H
Sbjct: 318 MRMERHVTEQQITVINDAYNASPTSMKASIDTLSNM--EGRKILILADCLELGDNSQHMH 375
Query: 408 EKILSYCCDACIDLIGLVGDR 428
E+I Y + ID + G+
Sbjct: 376 EEIGEYLKNKNIDELYTFGEE 396
>gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Hydrogenobacter thermophilus TK-6]
gi|384129775|ref|YP_005512388.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Hydrogenobacter thermophilus TK-6]
gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Hydrogenobacter thermophilus TK-6]
gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Hydrogenobacter
thermophilus TK-6]
Length = 436
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 35/378 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQ 105
C D+R + + F A+ G D H+F + E + +G VG I G +V K +V
Sbjct: 27 FCIDSREV--KEGNVFVALRGGRHDGHDF-AQEAFSRGAVGAIVQRGIKVPKG--KFYVL 81
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
V+ +TL +L +A Y R F+G ++GV GS GK+TTK MIA L +G V ++
Sbjct: 82 VD-----DTLEALRRIALY-RRRLFTGRVIGVAGSAGKTTTKEMIAFLLSKIG-KVCKTP 134
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N+N+++G+ S+ + V+EMG S KG++ L ++A+P +RV+ +G+ HLE+
Sbjct: 135 KNYNSQIGLPFSIANFEEDCQFWVVEMGASQKGDVKNLVKLAKPHVRVITAIGEEHLETF 194
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
G L+DV GEIF++ + DV VL V++ + V + FG G D++ +
Sbjct: 195 GCLDDVIVGNGEIFEDMQERDVAVL---PKYVSHCYELKNV--ITFG--EGGDLQATNIK 247
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
++ G+ QV E V + P L + NA + V G + ++ L+NFSP
Sbjct: 248 LSKEGITFQV------EDVSLSLRVPSLAVLENALCSLGVLKALGYNWKELSHHLANFSP 301
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
R L + + I++D YNANP S R A LL +G R+ +LGDMLELG
Sbjct: 302 APQRFHL-IRKGSFLIIDDTYNANPPSVRKA--LLSLSLFDGYRIALLGDMLELGPMSEA 358
Query: 406 SHEKILSYCC----DACI 419
H ++ C DACI
Sbjct: 359 YHREVGKLCAELGIDACI 376
>gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-42]
gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus Rock3-42]
Length = 460
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 188/359 (52%), Gaps = 18/359 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D HE++ E G V + + KG FV +TL +L +A + R
Sbjct: 57 DGHEYVK-EAMDNGAVASLWKKSYGTPPKGVPIIFVD-------DTLFALQQLAQFYR-R 107
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I L S V ++ GN+N+++G+ L+++ + R +
Sbjct: 108 EINVKVIGITGSNGKTTVKDIIEGILRST-YRVHKTKGNFNSQIGLPLTILEMKRDTEFL 166
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+R+A+P++ V+ +G SHLE+LGS +++A+AK EI + +
Sbjct: 167 ILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLF 226
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+PL++ V F + D+ Q+ G+ ++ K +++ +
Sbjct: 227 LYNGDEPLLSRNNKTSSVNCKTFSEKDTNDLFPTNVQLDEYGVHFKLNHTK----IQYDV 282
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H N AV + VS ++ +L + QMR + L ++ G I+NDA+NA
Sbjct: 283 PLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKIGFTIINDAWNA 342
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+P S +AAI+ L+ + K+++++GDMLELG H +I + I + G+
Sbjct: 343 SPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGE 401
>gi|295093770|emb|CBK82861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Coprococcus sp. ART55/1]
Length = 455
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 200/403 (49%), Gaps = 14/403 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQ--WFFAITGQHFDAHEFISPELYGK 85
T+ I E+ G +L G + TD I + + F I G D H FI L
Sbjct: 5 TVKNILEATGG-VLLCGDENTVLTDICINSKEAKEGDLFVPIIGTRTDGHRFIESALQTA 63
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
+ DK +++V+ +T+ +L + Y RN R+ +V VTGSVGK+T
Sbjct: 64 AATLTSEHDNVVVSDKAYIRVD-----DTVKALQAIGKYIRN-RYDMPVVAVTGSVGKTT 117
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
T+ MI A+ S G+ F + GN+N+ G +++ + D+AVLE+G+ GE+ L
Sbjct: 118 TREMITAAV-SAGMKCFHTEGNYNSVYGEPITVSRMTDEYDVAVLELGIGEPGEMDILTD 176
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+A+P+I V+ +G +H+E +GSLE+ + K I + +N DDP++ +
Sbjct: 177 IAQPDICVITTIGVAHIEYMGSLENTRKEKLNIIKGMGENGTLYINGDDPMLYAVKDEIP 236
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
+ +G G D R ++ +G +V + VK + GLH N+ A AV
Sbjct: 237 CKVYTYGCGEGMDFRATNIRMEDGYSVYDMVHGDDVVTVK--VGVMGLHNVRNSLVAMAV 294
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
+ GV + + NF +R +++ I++D YNA+P S +A+ D+L D+ C
Sbjct: 295 SHQLGVPYEKSSKAFENFR--GLRQKVIKLPGKYTIIDDTYNASPDSMKASTDVLCDMKC 352
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
GK+ ++LGDMLELG E H ++ Y D ID + ++G+
Sbjct: 353 EGKKYIVLGDMLELGEKSDEYHYEVGEYLRDKKIDEVIVIGEH 395
>gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis subsp. hominis C80]
gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus hominis subsp. hominis C80]
Length = 451
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 195/375 (52%), Gaps = 21/375 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R + K F G++ D H F+ L G + ++ + V
Sbjct: 29 VTIDSRHVE--KEMLFVPFKGENVDGHRFVEQALKSGAGASFYEKGQDISDSIQGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ +TL +L +A Y ++ + ++GVTGS GK+TTK MI L + V ++
Sbjct: 87 D-----DTLTALQQLAKAYLKH--VNPKVIGVTGSNGKTTTKDMIESVLHT-EFRVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D+ +I++LEMGMSG EI L+++A P+I V+ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIAEPDIAVITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + V G +
Sbjct: 199 GSREGIAKAKSEITIGLKSDGTFIYDGDEPLLKPHVENVKNAKLVSVGLNHENTLVCKVE 258
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
N G+ + ++ E+ P G+H NA A A+ G+ + ++SN
Sbjct: 259 NSKNDGIAFMINNKEHYEL-----PILGIHNMKNATIAIAIGHELGLDYNTIQKNISNVQ 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E V+ + I ++NDAYNA+P S +AAID L + NG+++++L D LELG +
Sbjct: 314 LTGMRMERHVTDNQITVINDAYNASPTSMKAAIDTLSHM--NGRKIIVLADSLELGENSQ 371
Query: 405 ESHEKILSYCCDACI 419
HE + +Y + I
Sbjct: 372 RMHEDVGTYLDNKGI 386
>gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 451
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 205/385 (53%), Gaps = 23/385 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R + N+N F G+H D H++++ L G G G + N D + V
Sbjct: 29 VSIDSRDIH-NQN-LFIPFKGEHVDGHKYVAQALKDGAGAAFYQKGEPLDENIDGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L ++A A + ++ VTGS GK+TTK MI L+ V ++ G
Sbjct: 87 D-----DTLEALQHLAK-AYLEFVNPQVIAVTGSNGKTTTKDMIESVLKP-QFKVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D +I++LEMGMSG EI L+++A+P+I ++ N+G+SH++ LG
Sbjct: 140 NYNNEIGMPLTILQLDIDTEISILEMGMSGFHEIELLSKLAQPDIAIITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVAA- 284
S E +A+AK EI K G + + + D+PL+ + V FG + D LV+
Sbjct: 200 SREGIAKAKSEITLGLKPGGLFIYDGDEPLLEPYANEIQNADLVSFG--KNSDNTLVSTI 257
Query: 285 -QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+ + G+ + ++ E+ P G H NA A AV ++ + +L N
Sbjct: 258 ETIKDHGIAFTINHDEHYEL-----PILGEHNMKNATIAIAVGKRLNLTYQTIFNNLKNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E ++ I ++NDAYNA+P S +AAID L G+++++LGD+LELG
Sbjct: 313 VLTGMRMEQHHTKDEILVINDAYNASPTSMKAAIDTLS--GMEGRKIIVLGDVLELGPDS 370
Query: 404 RESHEKILSYCCDACIDLIGLVGDR 428
+ HE + Y D ID + +G+
Sbjct: 371 QIMHEAVGLYFEDKDIDALFTLGNE 395
>gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus buchneri ATCC 11577]
gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus buchneri ATCC 11577]
Length = 460
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/406 (30%), Positives = 200/406 (49%), Gaps = 19/406 (4%)
Query: 28 TINEIAESVNG-------KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
TI EI +++N KIL+ G+ C DTR L P Q F ++G H D H+FI
Sbjct: 4 TIGEIVKAINASIENETDKILQTEVNGV-CFDTRRLTPG--QLFIPLSGTH-DGHDFIEN 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G G V + ++ D+ V + + L + ++ Y ++ + ++ VTGS
Sbjct: 60 AIKG-GAVATLW--ASDHTDRLPVAIPALVVDDPLAAFQKLSKYYL-TKINPRVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S NV ++Y N+NN +GV +++ ++ D V+EMGM G++
Sbjct: 116 NGKTTTKDMIASVL-SGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQL 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ P++ ++ +G++H+E G+ + +A AK EI K + + D+PL+
Sbjct: 175 DFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEPLLIER 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
K+ FG DV +V L ++ K IP G + NA
Sbjct: 235 AKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNLWPDK---KVTIPMMGDYNVNNAL 291
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA V LF + ++ LS+F + R+E L G KI++D YN+NP + R +
Sbjct: 292 AAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWLTGNKGEKILSDVYNSNPTAAREVLTAF 351
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+R+V+LGDMLELG + H + + I + LVG
Sbjct: 352 SQTDVMGRRIVVLGDMLELGDKSPQMHASLANDIDSNEIAAVYLVG 397
>gi|383458063|ref|YP_005372052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Corallococcus coralloides DSM 2259]
gi|380733532|gb|AFE09534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Corallococcus coralloides DSM 2259]
Length = 466
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 187/377 (49%), Gaps = 13/377 (3%)
Query: 37 NGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFIS-PELYGKGCVGVIGNQV 95
G+ ++ G P + CTDTR L P F A+ G+ FDAH+F+ + G V +
Sbjct: 19 RGEPVEAGFPAV-CTDTRSLTPGC--LFVALQGERFDAHDFVDGAQRQGAAGAVVKRGRA 75
Query: 96 CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155
GF E V + + RF + V GS GK+TTK M+ L
Sbjct: 76 LPALPPGFALYE----VEDTLAALGGLGALHRRRFQIPVAAVGGSNGKTTTKEMVGAILA 131
Query: 156 SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVL 215
+ G ++ GN+NN VGV L+L ++ + AV+E+GM+ GEI L R +P+ V+
Sbjct: 132 TRG-PALKTEGNFNNEVGVPLTLFRLEPSHVAAVIEVGMNQPGEIERLTRKVQPDAGVIT 190
Query: 216 NVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275
V HLE LGSLE VA A+GE+F+E V+N DD L+ G + + FG
Sbjct: 191 VVQPEHLEGLGSLEGVAEAEGEMFRELLPQATAVVNLDDALIVRQAARSGAKHLTFGRAE 250
Query: 276 GCDVRLVAAQ-VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLA 334
G DVRL A + G+ V + + V+ P H A NA AA A A G S
Sbjct: 251 GADVRLTAVHTLGRDGMVATVRYQGKDWPVRLHFVGP--HNAQNATAAFATALALGYSPE 308
Query: 335 QVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVIL 393
+ L + P R ++ R+G+ +V+D YNANP S AA+ L + G R V +L
Sbjct: 309 ECVKGLESARPYARRLNIVDGRNGVTVVDDCYNANPASMEAALVTLGTLVPEGGRAVAVL 368
Query: 394 GDMLELGSTERESHEKI 410
GDMLELG+ E E H ++
Sbjct: 369 GDMLELGAGEAEEHARL 385
>gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus brevis subsp. gravesensis ATCC 27305]
gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus brevis subsp. gravesensis ATCC 27305]
Length = 460
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/406 (30%), Positives = 200/406 (49%), Gaps = 19/406 (4%)
Query: 28 TINEIAESVNG-------KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
TI EI +++N KIL+ G+ C DTR L P Q F ++G H D H+FI
Sbjct: 4 TIGEIVKAINASIENETDKILQTEVNGV-CFDTRRLTPG--QLFIPLSGAH-DGHDFIEN 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G G V + ++ D+ V + + L + ++ Y ++ + ++ VTGS
Sbjct: 60 AIKG-GAVATLW--ASDHTDRLPVAIPALVVDDPLAAFQKLSKYYL-TKINPRVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S NV ++Y N+NN +GV +++ ++ D V+EMGM G++
Sbjct: 116 NGKTTTKDMIASVL-SGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQL 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ P++ ++ +G++H+E G+ + +A AK EI K + + D+PL+
Sbjct: 175 DFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEPLLIER 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
K+ FG DV +V L ++ K IP G + NA
Sbjct: 235 AKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNLWPDK---KVTIPMMGDYNVNNAL 291
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA V LF + ++ LS+F + R+E L G KI++D YN+NP + R +
Sbjct: 292 AAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWLTGNKGEKILSDVYNSNPTAAREVLTAF 351
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+R+V+LGDMLELG + H + + I + LVG
Sbjct: 352 SQTDVMGRRIVVLGDMLELGDKSPQMHASLANDIDSNEIAAVYLVG 397
>gi|414161640|ref|ZP_11417895.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus simulans ACS-120-V-Sch1]
gi|410875450|gb|EKS23369.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Staphylococcus simulans ACS-120-V-Sch1]
Length = 454
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 123/397 (30%), Positives = 201/397 (50%), Gaps = 20/397 (5%)
Query: 35 SVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGN 93
++ K L G+ +I ++ F G++ D H F+ L G G V +
Sbjct: 16 EIDEKYLDHTIKGVTIDSRKI---DEGNLFIPFKGENTDGHRFVEQALQDGAGAVFYQKD 72
Query: 94 QVCNNWDKG-FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIAL 152
+ +G + V+ +TL +L +A A ++ VTGS GK+TTK MI
Sbjct: 73 VKPEHPVEGPVIWVD-----DTLLALQELAK-AYLQHVQPKVIAVTGSNGKTTTKDMIES 126
Query: 153 ALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIR 212
L+ V ++ GN+NN +G+ L+++ +D +I++LEMGMSG +I L+ +A+P+I
Sbjct: 127 VLKP-NFKVKKTQGNYNNEIGMPLTILELDEDTEISILEMGMSGFHQIELLSEIAQPDIA 185
Query: 213 VVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP-LVANLTVPRGVRKVFF 271
V+ N+G+SH++ LGS E +ARAK EI K V + + D+P LV ++ + +
Sbjct: 186 VITNIGESHMQDLGSREGIARAKFEIVAGLKPEGVLLYDGDEPLLVPHVHTLENNQAISI 245
Query: 272 GWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGV 331
G +V Q + LG+ + + + IP G+H NA A V L G+
Sbjct: 246 GISSENEVVCHVEQ--HDALGIAFSINDQEH---YQIPILGIHNMRNAAIAITVGKLSGL 300
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
+ +++ QMR EL S+ + ++NDAYNA+P S +AAID L A +G++++
Sbjct: 301 DYETIKTNIAQVQLTQMRMELHHSKQDVAVINDAYNASPTSMKAAIDTLS--AMDGRKIL 358
Query: 392 ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
IL D+LELG H + Y D ID + G+
Sbjct: 359 ILADVLELGENSAAMHASVGEYLEDKGIDYLLTYGEE 395
>gi|427736982|ref|YP_007056526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rivularia sp. PCC 7116]
gi|427372023|gb|AFY55979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rivularia sp. PCC 7116]
Length = 454
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 129/369 (34%), Positives = 195/369 (52%), Gaps = 36/369 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+RI+ P + F A G+ FD H+F++ + KG + I + N ++V
Sbjct: 33 IQTDSRIIKPG--EVFVAFRGEKFDGHKFVATAIE-KGAIAAIVDFEYENSQLPVLKV-- 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + +A + RN +FS ++GVTGSVGK+TTK +IA L + G V ++Y N+
Sbjct: 88 ---TNTLETYQKIAQWWRN-QFSIPIIGVTGSVGKTTTKELIAGVLSTQG-RVHKTYANF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EM M G G+I EL ++ RP I V+ NVG +H+E L S
Sbjct: 143 NNEIGVPKTLLELVAEHDYAVIEMAMRGLGQIAELTQITRPTIAVITNVGTAHIELLKSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVA 287
E +A+AK E+ E V +LN D+PL+ KV FG+ G D+
Sbjct: 203 EAIAQAKCELLAEMPKDGVAILNYDNPLLMKTAAKVWQGKVISFGF-TGGDI-------- 253
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS--- 344
+G L LE ++ +P PG H+ N AA AVA + + I SNF
Sbjct: 254 HGKLIDNYTLEIAG--LRLPLPMPGRHIGANYMAALAVAKV-------LNIDWSNFKNGV 304
Query: 345 PVQM---RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
V M RS+ + + I+++ YNA P + AA++LL + +R+ +LG M ELG
Sbjct: 305 AVDMPGGRSQQFTLLNDVLILDETYNAAPEAMVAALNLLAETPGK-RRIAVLGAMKELGE 363
Query: 402 TERESHEKI 410
+ H++I
Sbjct: 364 KSEQLHQQI 372
>gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Neptuniibacter caesariensis]
gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Oceanospirillum sp. MED92]
Length = 457
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 202/387 (52%), Gaps = 15/387 (3%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
W +N++ + G + + + TDTR + K F A+ G +FD H+++ + + KG
Sbjct: 5 WYLNQLKDQFGGLVTQDVEFSGVSTDTRSI--TKGDLFVALVGPNFDGHDYVE-QAFSKG 61
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
V + ++ + K V+ +T +L ++A A RF G + VTGS GK+T
Sbjct: 62 AVAAVVSRSDSVSRKAAWVVD-----DTRIALADIA-KANRQRFEGPVYAVTGSSGKTTV 115
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K M+ A+ S V + GN NN +GV L+L + +IAV+E G S +GEI +
Sbjct: 116 KEMLH-AILSQNAEVLATKGNLNNDIGVPLTLFSLKDQHEIAVIEQGASARGEIAYTTDI 174
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLVA-NLTVPR 264
+ P++ ++ N +HLE GSL+ V +K EIF S+ G ++N DDP L+
Sbjct: 175 SCPDVAILNNAMGAHLEGFGSLQGVVESKAEIFSRLSETGGHAIINLDDPHADWWLSHTE 234
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLG-VQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
G+ ++ F R + L A+ +A G VL + E + + G H NA AAA
Sbjct: 235 GLPRLTFSARGDLEADLWASDLAPSDNGCFAFVLHRNDEQIDVQLQVMGQHNVANALAAA 294
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ + G+SL + L +FS V R L S G +++D+YNANP S AA+DLL +
Sbjct: 295 SAVSAQGMSLKDIASGLGSFSAVSGRMRPLKSARGALVIDDSYNANPGSVNAAMDLL--V 352
Query: 384 ACNGKRVVILGDMLELGSTERESHEKI 410
+ G+ V++LGDM ELG+ E HEK+
Sbjct: 353 SLPGESVLVLGDMAELGADAAEQHEKV 379
>gi|427718687|ref|YP_007066681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Calothrix sp. PCC 7507]
gi|427351123|gb|AFY33847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Calothrix sp. PCC 7507]
Length = 451
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 122/365 (33%), Positives = 206/365 (56%), Gaps = 28/365 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+RI+ P + F A+ G++FD HEF++ + +G + I + C + G ++
Sbjct: 33 LQTDSRIIKPG--EVFVALRGENFDGHEFVARAI-AQGALAAIVD--CAYENPGLPTLQV 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N NTL + + + R+ RF ++GVTGSVGK+TTK +IA L + G V ++YGN+
Sbjct: 88 N---NTLEAYQKIGRWWRD-RFHIPVIGVTGSVGKTTTKELIAAVLATKG-RVHKTYGNY 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ +D D AV+EM M G+G+I EL ++ +P I ++ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELDTEHDYAVIEMAMRGRGQIAELTQITQPTIGLITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E +A AK E+ E + +LN D+PL+ + + KV+ G ++ ++
Sbjct: 203 EAIAEAKCELLAEMPKDSIAILNHDNPLLMSTAM-----KVWAG-------EVITYGLSG 250
Query: 289 GGLGVQVVLEKEREM--VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + ++V + E+ ++ +P PG H A+N A AVA + G+ + + ++ P
Sbjct: 251 GDIQGRLVDNETVEVAGIRLPLPLPGRHNAVNFLATLAVARVVGIDWSSLQAGVTVNMPT 310
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTERE 405
RS+ V + + I+++ YNA P + AA+ LL D GKR + +LG M ELG +
Sbjct: 311 G-RSQRFVLSNDVVILDETYNAAPEAMLAALQLLAD--TPGKRKIAVLGAMKELGERSPQ 367
Query: 406 SHEKI 410
H+++
Sbjct: 368 LHQRV 372
>gi|392555966|ref|ZP_10303103.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas undina NCIMB
2128]
Length = 460
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 133/384 (34%), Positives = 198/384 (51%), Gaps = 25/384 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L + F A+ G +FD H+FI + KG +GVI + + FV +
Sbjct: 27 INTDTRTLC--DGEVFLALKGPNFDGHKFIE-QAKQKGAIGVIVDHAIDTDIAQFVVADT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ T+ + V MA A + + +TGSVGK+T K M A L S G +V + GN+
Sbjct: 84 RIALGTIGTAV-MAQVAPKT------IAITGSVGKTTVKEMCAAILSSKG-DVLATKGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ AV+E+G + GEI M +P++ VV NV +HLE GSL
Sbjct: 136 NNDIGVPLTLLRLEPQHRYAVIELGANHIGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKV--FFGWRR----GCDVRLV 282
+ VA+AKGEI+ K + ++N D RKV F + D+ L
Sbjct: 196 QGVAQAKGEIYDGLKDDGIAIVNCDSEFSQYWLDKLAARKVKCFSSSEKLDIWAEDISLD 255
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A A+ +L ++ V + PG H NA AAA+ + F VSL ++ +L+
Sbjct: 256 AQARAS------FMLCTKQHRVPVTLALPGKHNISNALIAAALTSEFDVSLEEIASALAT 309
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
V+ R L+ + + I++D YNAN S +AAIDLL DI G R++ LGDM ELG
Sbjct: 310 MGEVKGRVNLIEASDSLTIIDDTYNANVKSVKAAIDLLSDI--QGHRILALGDMGELGED 367
Query: 403 ERESHEKILSYCCDACIDLIGLVG 426
R+ H+++ Y ID + +G
Sbjct: 368 ARKYHQEVGEYALAQGIDELFTLG 391
>gi|418575591|ref|ZP_13139741.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379325993|gb|EHY93121.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 451
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 204/385 (52%), Gaps = 23/385 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGV-IGNQVCNNWDKGFVQV 106
+ D+R + N+N F G+H D H++++ L G G G + N D + V
Sbjct: 29 VSIDSRDIH-NQN-LFIPFKGEHVDGHKYVAQALKDGAGAAFYQKGEPLDENIDGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +TL +L ++A A + ++ VTGS GK+TTK MI L+ V ++ G
Sbjct: 87 D-----DTLEALQHLAK-AYLEFVNPQVIAVTGSNGKTTTKDMIESVLKP-QFKVKKTQG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+++ +D +I++LEMGMSG EI L+++A+P+I ++ N+G+SH++ LG
Sbjct: 140 NYNNEIGMPLTILQLDIDTEISILEMGMSGFHEIELLSKLAQPDIAIITNIGESHMQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVAA- 284
S E +A+AK EI K G + + + D+PL+ + V FG + D LV+
Sbjct: 200 SREGIAKAKSEITLGLKPGGLFIYDGDEPLLEPYANEIQNADLVSFG--KNSDNTLVSTI 257
Query: 285 -QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+ + G+ + ++ E+ P G H NA A AV ++ + +L N
Sbjct: 258 ETIKDHGIAFTINHDEHYEL-----PILGEHNMKNATIAIAVGKRLNLTYQTIFNNLKNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E ++ I ++NDAYNA+P S +AAID L G+++++LGD+LELG
Sbjct: 313 VLTGMRMEQHHTKDEILVINDAYNASPTSMKAAIDTLS--GMEGRKIIVLGDVLELGPDS 370
Query: 404 RESHEKILSYCCDACIDLIGLVGDR 428
+ HE + Y D ID + G+
Sbjct: 371 QIMHEAVGLYFEDKGIDALFTFGNE 395
>gi|418635605|ref|ZP_13197979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis VCU139]
gi|374841710|gb|EHS05167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus lugdunensis VCU139]
Length = 452
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 193/384 (50%), Gaps = 20/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGV--IGNQVCNNWDKG-FVQ 105
+ D+R + P F G+H D H F+ + G ++ ++ ++ +
Sbjct: 29 VTIDSRAVQPQ--MLFIPFKGEHVDGHRFVKQSIQDGAAAAFYQTGQEIGSSLEEQPLIY 86
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
V +TL +L +A N V + VTGS GK+TTK MI L++ V ++
Sbjct: 87 VS-----DTLTALQQLAKAYLNYVQPKV-IAVTGSNGKTTTKDMIESVLKT-QFKVKKTQ 139
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D DI++LEMGMSG EI L+ +A P+I V+ N+G+SH++ L
Sbjct: 140 GNYNNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDL 199
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS +A+AK EI K + + + D+PL+ ++ + + + G +
Sbjct: 200 GSRAGIAKAKSEIVTGLKDNGIFIYDGDEPLLQPHVAQVKHAKLISVGLEQHNTYVCTID 259
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
N G+ + + +P G+H NA A AV G+S + ++ +
Sbjct: 260 SNQNDGIAFNI-----NNTEHYELPILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQ 314
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E V+ I ++NDAYNA+P S +A+ID L ++ G++++IL D LELG +
Sbjct: 315 LTGMRMERHVTEQQITVINDAYNASPTSMKASIDTLSNM--EGRKILILADCLELGDNSQ 372
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
HE+I Y + ID + G+
Sbjct: 373 HMHEEIGEYLKNRNIDELYTFGEE 396
>gi|422343141|ref|ZP_16424069.1| hypothetical protein HMPREF9432_00129 [Selenomonas noxia F0398]
gi|355378448|gb|EHG25628.1| hypothetical protein HMPREF9432_00129 [Selenomonas noxia F0398]
Length = 469
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 190/366 (51%), Gaps = 12/366 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F A+ G+ FD +F + L ++G + + +K + +G
Sbjct: 31 ITTDTRKI--SSGDLFVALRGEKFDGADFAAEALERGAAAVIVGTPLSTSAEKALKKAKG 88
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ L + +A +A +F ++ +TGS GK+TTK + A L G V ++
Sbjct: 89 TVLKAEDGLRAYQAIA-HAWRMKFDIPVIAITGSNGKTTTKELTAAVLSGRG-KVCRTAA 146
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN VG+ L+L+GI AV+E+GM G G+I LA +A P I +V NV + H+E LG
Sbjct: 147 NYNNEVGLPLTLLGIMPEDFAAVVEIGMRGLGQIAALAPVAAPTIGIVTNVCEVHMELLG 206
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRGVRKVFFGWRRGCDVRLVAA 284
S+E++A+AK E+ + G +LNADD VA + GVR + +G DVR A
Sbjct: 207 SIENIAKAKAELVEAIPSGGTVILNADDSRVAAMRSFAADGVRILTYGIDADADVRAEAL 266
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
Q A G V ER ++ + PG H N AA A G++ ++ L N
Sbjct: 267 QCAADGSRFMVTYANERH--EYAVSLPGRHNVSNTLAALAAGFALGLTPQEMQAGLRNIE 324
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
+MR E S +NDAYNA+P S RAA++ + G+++ +LGDMLELG+
Sbjct: 325 GTKMRYE-TESVGAWMFINDAYNASPSSMRAALETTAAL-YPGRKIAVLGDMLELGAAAE 382
Query: 405 ESHEKI 410
E+H I
Sbjct: 383 EAHRMI 388
>gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum E3 str. Alaska E43]
gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum E3 str. Alaska E43]
Length = 453
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 203/388 (52%), Gaps = 17/388 (4%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+NE+ ++++G++L G I TDTR + +KN F A+ G +F+ + ++ +
Sbjct: 3 LTLNEVLKAIDGELLIKNNEGSFEKISTDTRKI--DKNSLFIALKGNNFNGNNYVVEAIK 60
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
V +I ++ DKG V + + +L +A Y R + +VG+TGS
Sbjct: 61 AGATVAIIDEVNFKLEELNDKGTVIKVNDAKI----ALGALAKYYR-EKLGIKVVGITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++A A S +VF++ GN+NN +G+ L + +D + DIAVLEMG + EI
Sbjct: 116 TGKTSTKDLVA-AFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +ARP++ ++ NVG SH+E L + E++ + K I K + V+N ++ ++ +
Sbjct: 175 HRLTNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQKV 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ G+ + D+ ++ V E +F + G H +NA
Sbjct: 235 NEDHEFKIEKIGYDKKYDLYAENIELTEESTSFDAV-NSNGERHRFKLNMVGEHNILNAL 293
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
++ FG++ ++ + L+NF MR E + ++ I+ND YNA+P S ++A+ +L
Sbjct: 294 LGIRISENFGITFEEMELGLNNFEATSMRLE-FIKKNNFTIINDCYNASPDSMKSALSVL 352
Query: 381 KDIACNGKRVVILGDMLELGSTERESHE 408
K + +++ +LGDM ELG + SHE
Sbjct: 353 KTYSG-SRKIAVLGDMGELGDHAKSSHE 379
>gi|398817975|ref|ZP_10576574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brevibacillus sp. BC25]
gi|398028773|gb|EJL22276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brevibacillus sp. BC25]
Length = 460
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 187/377 (49%), Gaps = 20/377 (5%)
Query: 40 ILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ- 94
IL G PG+ + DTR L F A+TG D H+F+ ++ NQ
Sbjct: 16 ILLAGSPGLALSSVHFDTREL--TAGSLFVALTGGARDGHDFLLQAAEQGAVAALVSNQE 73
Query: 95 -VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALA 153
+ N F + N +TL +A R S FS + +TGS+GK+T K ++A
Sbjct: 74 KIPVNLPNDFGLILVN---DTLRGFQKLAAAYRKS-FSFPRIAITGSIGKTTVKDIVAHV 129
Query: 154 LESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRV 213
L S V+++Y N+NN +GV LSL+ ++ AVLE+GM+ GEI LA + +P+I V
Sbjct: 130 LGSRS-PVYKTYKNFNNHIGVPLSLLQMEEKHQAAVLELGMNHAGEIDLLASLVQPDISV 188
Query: 214 VLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVANLTVPRGVRKVF 270
+ +G+SH+E G+ E +A AK E+ + L + +LN D L+A+L P + ++
Sbjct: 189 ITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLLNKDSEYLRLIAHL-YPGEI--MY 245
Query: 271 FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFG 330
+ D+ + GG +V F +P G H +NA A A+A G
Sbjct: 246 YSVNEKADIWAEQIETVEGGTRFKVCFASGGHFEAF-LPLHGRHSVLNALPAVAIAKRLG 304
Query: 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRV 390
+ Q+ +LS MR E + S+ G ++DAYNA+P+S AA+ ++ RV
Sbjct: 305 MDTEQITHALSTVQLSAMRFEQMNSKHGAVYISDAYNASPVSMEAAVRTFAELYPERARV 364
Query: 391 VILGDMLELGSTERESH 407
V+LGDM ELG H
Sbjct: 365 VVLGDMYELGPESASMH 381
>gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
tetani E88]
gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
tetani E88]
Length = 459
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 216/412 (52%), Gaps = 37/412 (8%)
Query: 28 TINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
++ EI ++V+G+IL G I TDTR + + F A+ G+ F+ +E+ +
Sbjct: 5 SLEEIVKAVSGEILIKGNELGWEYISTDTRKIE--EKAIFIALKGERFNGNEY-TASASQ 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG I ++V + +++ V +T +L+++A Y + S+ +V +TGS
Sbjct: 62 KGAFICIVDEVHFKKE----EIKDYTTVIKVKDTSEALLDLAKYYK-SKLEVKVVAITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK + A L VF++ GN+NN +G+ L + +D+ DIAVLEMGMS GEI
Sbjct: 117 TGKTSTKDLTASVL-GAKYKVFKTEGNFNNEIGLPLMIFKLDKTYDIAVLEMGMSNFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
++A+ A P+I ++ N+G SH+E+L S +++ +AK EI ++ ++N +D L+ NL
Sbjct: 176 HKMAKTALPDIAIITNIGISHIENLKSRDNILKAKLEIIDFFGEDNILIVNGEDDLLGNL 235
Query: 261 TVPR--------GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
+ G + + + + V+ ++ G +Q+ IP PG
Sbjct: 236 KEEKYKLIKTGLGKNHNIYAYDINLNEKSVSFKIFEDGDELQI-----------DIPVPG 284
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H +N+ A A +F +S ++ + + MR +++ + IV+D+YNA+P S
Sbjct: 285 KHNVLNSLLAIACGRIFKMSFEEIKNGILDLQTTSMRLDMVEGKK-FNIVDDSYNASPDS 343
Query: 373 TRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGL 424
+AAI++L +I ++ +LG M ELG +H +I Y + ++LI L
Sbjct: 344 MKAAIEVLCNIKSK-RKFAVLGTMKELGEEAYRAHREIGKYAGEKSVNLIVL 394
>gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 458
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 197/383 (51%), Gaps = 18/383 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVG-VIGNQVCNNWDKGFVQVE 107
I TDTR + K F A+ G+ FD H+F+ E + KG V V+ N+ VQ
Sbjct: 29 ISTDTRSIK--KGDLFIALKGKKFDGHDFLH-EAFLKGAVAAVVSEDKYRNFPLIIVQ-- 83
Query: 108 GNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+TL +L NMA Y RN + ++ +TGSVGK+TTK M+ L GV+ G
Sbjct: 84 -----DTLKALHNMASYYIRNILVNAKVITITGSVGKTTTKDMLNTVLLHYGVSHVNE-G 137
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +G+ +++ +LE+GMS GEI EL++++ P+I V+ N+ +H+E+
Sbjct: 138 NLNNNIGLPFTILKAPEDCQYLILEIGMSRAGEIKELSKISNPDIAVITNIEPAHVENFS 197
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
SL D+A+AK EI K VLN D+ L V FG V L+
Sbjct: 198 SLLDIAQAKLEILHGMKNNGTLVLNKDNEHYDYLLSNANRNVVSFGKNESATVCLLELIR 257
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+ GL +++ L +++ +P G H A +A AV + L+++ ++L NF+
Sbjct: 258 DDNGLNLKIKL-NSGQIMNCNLPVKGEHFAYSALVVTAVLQSLELDLSKLPLALENFTVT 316
Query: 347 QMRSELLVSRSG---IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
+ R + ++ + ++ND+YNANP S +AAI L + N ++V +LGDML LG+
Sbjct: 317 EGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIRTLGTYS-NLRKVALLGDMLGLGNES 375
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
H ++L + ++ + VG
Sbjct: 376 IVFHTELLDSIVEQNVNKVHTVG 398
>gi|359412524|ref|ZP_09204989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
sp. DL-VIII]
gi|357171408|gb|EHI99582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
sp. DL-VIII]
Length = 457
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 214/391 (54%), Gaps = 23/391 (5%)
Query: 29 INEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ EI ++V+G+I+ G+ I TDTR + K+ F A+ G +F+ +++ + + K
Sbjct: 8 LEEIIKAVDGEIIIKNNEGLFNRISTDTRKIE--KDNLFIALKGGNFNGNDY-AIHAFEK 64
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G V+ ++V +D F + + G V +T +L ++A + R + +VG+TGS
Sbjct: 65 GAAIVVIDEV--KFD--FKECDNIGTVIKVKDTKAALSDLARFYR-KKLGVKVVGITGST 119
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK +IA A S VF++ GN+NN +G+ L + + + +DIAVLEMG S GEI
Sbjct: 120 GKTSTKDLIA-AFLSGKYKVFKTQGNFNNEIGLPLMIFELSKEIDIAVLEMGTSNFGEIN 178
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI--FQESKLGDVCVLNADDPLVAN 259
LA +A P++ + N+G +H+E L + E++ + K I F ESK + +LN ++ ++
Sbjct: 179 RLASVALPDVAAITNIGVAHIEYLKTRENILKEKMCISDFFESK--NSLILNCENDMLKT 236
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ G+ D+ ++ + V+ K+ E +F + G H +NA
Sbjct: 237 VKESNKFNLQRIGYDESYDLYAKNIKLTSEDTSFDVIT-KDNESHRFTLNMIGEHNVLNA 295
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
+A FG++ ++ L NF+ MR E + + I+ND+YNANP S +AA+++
Sbjct: 296 LIGIQIARDFGLTFEEMEKGLRNFNATSMRLE-FIKKDSFTIINDSYNANPDSMKAALEV 354
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKI 410
L++ + N K++ +LG M ELG E+H K+
Sbjct: 355 LRNYSGN-KKIAVLGTMGELGDYATEAHIKV 384
>gi|409438742|ref|ZP_11265805.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[Rhizobium mesoamericanum STM3625]
gi|408749402|emb|CCM76981.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
[Rhizobium mesoamericanum STM3625]
Length = 477
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 204/416 (49%), Gaps = 19/416 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT ++ ++ G+ P GI I D+R + P + FFAI G D H+F S +
Sbjct: 4 LWTTEDMIAAMAGRPFGTLPEGITGISIDSRSIVPG--EAFFAIKGDRVDGHDFTSMAMA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ V+ + V V +V L +L +A +R +R ++ VTGSVGK
Sbjct: 62 NGAALLVVSEARLPAMGRLTVPVIVVEDV--LAALGKLAIASR-ARSRAQIIAVTGSVGK 118
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ L G V S ++NN GV L+L + V E+GM+ EI L
Sbjct: 119 TTTKEMLRRVLSPSG-KVHASVASFNNHWGVPLTLARMPLDTYFGVFEVGMNHPDEIRPL 177
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVANL 260
+M RP + V+ + +HL + S+ ++A AK EIF+ G VLN D+ +
Sbjct: 178 VKMIRPHVAVITTIAPAHLGNFKSIREIATAKAEIFEGVASGGKVVLNRDNDQFNFLERT 237
Query: 261 TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+G++ ++ FG D RL ++ + + ++ + + V I +PG H+A NA
Sbjct: 238 AQAQGIQHIYSFGQHAKADFRLAEFNGSDQSSTLWITIDGDTKEV--AIGAPGRHIAENA 295
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPISTRAA 376
AA V + G + Q +L+ P + R L + RS +++++YNANP S RAA
Sbjct: 296 LAALGVVKIVGADMQQAIGALATLKPEKGRGRRHRLAIDRSAFTVIDESYNANPASMRAA 355
Query: 377 IDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
I +L A G+RV +LGDMLE+G ++ H + A I+ + L G +V
Sbjct: 356 IAVLASAVPAGAGRRVAVLGDMLEMGDYAQKVHSDLAGPLLAAGIEHVWLAGPEMV 411
>gi|430761873|ref|YP_007217730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Thioalkalivibrio nitratireducens DSM 14787]
gi|430011497|gb|AGA34249.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Thioalkalivibrio nitratireducens DSM 14787]
Length = 458
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 205/387 (52%), Gaps = 25/387 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
T E+A +V G++ G + D+R P F A+ G+ FD H+F+ PEL +
Sbjct: 5 TAAELAGAVAGRLHGDGERSFRGVSRDSRASWPEA--LFVALRGERFDGHDFVRPEL--E 60
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
V ++ + + + V +T +L + Y R +R + +V +TGS GK+T
Sbjct: 61 AAVLLVERPLDDPRPQVVVD-------DTTGALARLGVYWR-TRCTARVVALTGSNGKTT 112
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK M+ L +G +V + GN NN +GV L+L+ + R+VD AV+EMG + GEI L R
Sbjct: 113 TKEMLRSILSGVG-SVHATEGNLNNHIGVPLTLLAMPRSVDYAVIEMGANHAGEIAFLTR 171
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLVAN-LTVP 263
+ARPE+ ++ N G +HL+ GSLE VARAK EI+ G V+N DD + L +
Sbjct: 172 LARPEVALITNAGRAHLDGFGSLEGVARAKAEIYAGLPAQGGTAVINLDDRFAGDWLALN 231
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
R ++ F + +++ V A GL V V ERE+ ++ +PG H+A NA AAA
Sbjct: 232 RDRPRLGFSLQGRGEIQGVWKPPA--GL-VLKVSGAEREL---LLAAPGRHVAQNALAAA 285
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
A A G + + L + PV R SG I +D YNANP S AA+++L
Sbjct: 286 AAAAALGCEIDAIARGLQAWRPVAGRLRAFRHLSGAVIWDDTYNANPDSLAAALEVLA-- 343
Query: 384 ACNGKRVVILGDMLELGSTERESHEKI 410
G RV++LGDM ELGS R H ++
Sbjct: 344 GHPGTRVLVLGDMNELGSEARSLHAEM 370
>gi|379796407|ref|YP_005326408.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus MSHR1132]
gi|356873400|emb|CCE59739.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Staphylococcus aureus subsp. aureus MSHR1132]
Length = 454
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 199/384 (51%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R A + F G++ D H F+S L G + ++ + V
Sbjct: 29 VTIDSR--AIKEGMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTPIDDDITGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R + ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLVALQQLAQAYLR--YVNPKVIAVTGSNGKTTTKDMIESVLHT-EFKVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ +D +I++LEMGMSG EI L+ +A+P+I ++ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILDLDNDTEISILEMGMSGFHEIELLSNLAQPDIAIITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV-ANLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ +++ + + + G D LV +
Sbjct: 199 GSREGIAKAKSEITIGLKDNGTFIYDGDEPLLESHVKEVQSAKCMSIGVDTDND--LVCS 256
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + + F +P G+H NA A AV G+S + +L +
Sbjct: 257 VDDRDTTGIAFTINGKEH---FDLPILGVHNMKNATIAIAVGYELGLSYDTIYRNLKYVT 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E + I ++NDAYNA+P S RAAID L + NG+ ++ILGD+LELG +
Sbjct: 314 LTGMRMEQHELDNDITVINDAYNASPTSMRAAIDTLS--SLNGRHILILGDVLELGENSK 371
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
H ++ +Y D I+++ GD
Sbjct: 372 SMHSQVGTYLQDKQIEVLYTFGDE 395
>gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus hilgardii ATCC 8290]
gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus hilgardii ATCC 8290]
Length = 460
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 191/406 (47%), Gaps = 19/406 (4%)
Query: 28 TINEIAESVNG-------KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
TI EI +++N KIL+ G+ C DTR L P Q F ++G H D H+FI
Sbjct: 4 TIGEIVKAINASIENETDKILQTEVNGV-CFDTRRLTPG--QLFIPLSGTH-DGHDFIEN 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G + + N + + + L N R ++ VTGS
Sbjct: 60 AIKGGAVATLWASDHTNRLPVAIPALVVDDPLAAFQKLSKYYLTKINPR----VIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S NV ++Y N+NN +GV +++ ++ D V+EMGM G++
Sbjct: 116 NGKTTTKDMIASVL-SGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQL 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ P++ ++ +G++H+E G+ + +A AK EI K + + D+PL+
Sbjct: 175 DFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEPLLIER 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
K+ FG DV +V L ++ K IP G + NA
Sbjct: 235 AKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNLWPDK---KVTIPMMGDYNVNNAL 291
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA V LF + ++ LS+F + R+E L G KI++D YN+NP + R +
Sbjct: 292 AAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWLTGNKGEKILSDVYNSNPTAAREVLTAF 351
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+R+V+LGDMLELG + H + + I + LVG
Sbjct: 352 SQTDVMGRRIVVLGDMLELGDKSSQMHASLANDIDSNEIAAVYLVG 397
>gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Butyrivibrio crossotus DSM 2876]
gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Butyrivibrio crossotus DSM 2876]
Length = 456
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 126/402 (31%), Positives = 196/402 (48%), Gaps = 29/402 (7%)
Query: 40 ILKWGPPGIICTDTRILAPN---------KNQWFFAITGQHFDAHEFISPELYGKGCVGV 90
I+K ++C D I N +N F I G+ DAH FI + G V V
Sbjct: 9 IVKATKGEVLCGDMNIPIENVSTDSNSIKENSLFVPIIGERVDAHTFIDSAI-ANGAVAV 67
Query: 91 IGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVL-----VGVTGSVGKST 145
+ ++ E GNV + ++ G L +GVTGSVGK+T
Sbjct: 68 LTSE----------HDEMTGNVPYIRVSNTTMALQEIGKYYGKLMIMPKIGVTGSVGKTT 117
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK MIA AL S G VF++ GN N+++GV L+L+ + IAV+EMGMS +GE+ L+
Sbjct: 118 TKEMIACAL-SAGYKVFKTSGNSNSQIGVPLTLLKMSPDDQIAVIEMGMSMRGEMSRLSE 176
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD-VCVLNADDPLVANLTVPR 264
+ + V+ N+G SH+E L + + + K I D + +N DD ++
Sbjct: 177 LVELDDAVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDGIVFINGDDAILNKHKSEL 236
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
R + FG D +V NGG+ V + K + + G H NA A A
Sbjct: 237 RHRIITFGLGNDNDYFATNIKVKNGGVDFTVNI-KNKGSYDARLNVLGEHNVRNALVAIA 295
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
VA G+ + + +L+ + V MR + + +G+ I++D+YNA+P S +A ID+L D
Sbjct: 296 VAERHGIEVTEAIKALAGYEGVSMRQQ-ITDVNGVTIIDDSYNASPDSMKAGIDVLCDYN 354
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
NG+++ +L DMLELG + H+++ Y + ID + L G
Sbjct: 355 NNGRKIAVLADMLELGDKSADYHKEVGGYMAEKKIDELILFG 396
>gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Jannaschia sp. CCS1]
gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Jannaschia sp. CCS1]
Length = 473
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 202/417 (48%), Gaps = 25/417 (5%)
Query: 26 IWTINEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+WT + A + G W G+ DTR + P F D HEF++ + +
Sbjct: 3 LWTSADAASATGGTSQGTWTATGV-SIDTRTIEPGD---LFVALAAARDGHEFVA-QAFQ 57
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
KG + N V + D V + L +L + AR +R ++ +TGSVGK+
Sbjct: 58 KGASAALVNHVPDGMDAAKCLVVDD----VLAALERLGTAAR-TRTQAKVIAITGSVGKT 112
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
T K M+ AL G + + ++NN GV L+L + D AV+E+GMS GEI L+
Sbjct: 113 TVKDMLKQALSGQG-KIHAAVASYNNHWGVPLTLSRMPVDTDYAVIEIGMSAPGEIAPLS 171
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD---DPLVANLT 261
RMARP + ++ + +HLE+ G +E +A K IF+ + V ++ D P++A
Sbjct: 172 RMARPHVAMITTIAPAHLEAFGRIEGIAEEKASIFEGLEPDGVAIVPMDVETAPILARAA 231
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
V V FG G D+RL +++ +++ ++ + K + G H A+NA
Sbjct: 232 VAHAAEVVTFGEAEGADLRLTDVMLSDDSTVMRIATDEGGRLAKLSV--SGRHYAVNAVG 289
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRS---GIKIVNDAYNANPISTRA 375
G Q ++LS++ PV+ R + +SR+ I++++DA+NANP S A
Sbjct: 290 VLCAVAASGADTTQAAMALSHWQPVEGRGQRERIQLSRTDDIAIELIDDAFNANPTSLAA 349
Query: 376 AIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
+++L I G+R+ +LGDMLELG + H I S +D++ G +V
Sbjct: 350 GLEVLAAITPERGGRRIAVLGDMLELGDDGAKMHADIASLPAMEAVDIVHTCGPLMV 406
>gi|452993096|emb|CCQ95440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium ultunense Esp]
Length = 463
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 194/382 (50%), Gaps = 18/382 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ TD+R + K Q F + G++F+ H FI + KG + + +Q D F+ V
Sbjct: 30 VSTDSRTIG--KGQLFIPLIGENFNGHSFIEQAI-KKGAIASLWDKSQPIPELDFPFILV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL +L +A R + + ++G+TGS GK+TTK +IA L S ++ G
Sbjct: 87 E-----DTLIALQQLAKEYR-EQLNVKVIGITGSNGKTTTKDIIASIL-STKYKTKKTKG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G L+L+ +D +++V+EMG GEI L +A+P+I ++ N+G++HLE L
Sbjct: 140 NYNNLIGAPLTLLELDEDTEVSVVEMGTDKFGEISVLTSIAKPDIAIITNIGEAHLEDLK 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK--VFFGWRRGCDVRLVAA 284
+ E++A+AK EI + + + DDP++ + + + +G D +
Sbjct: 200 TPENIAKAKLEILEGLSKDGLFIYWGDDPILKKIIKDMVIEQKITTYGIEEPNDYQCELG 259
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
V G+ ++ K+ + F +P G H NA AA VA F + + L +
Sbjct: 260 LVDENGISFKL---KKPDEEDFFLPLLGKHNMYNATAAITVARYFDIPFNLIREGLYHVE 316
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR+E LV G I+ND+Y +NP S AA+D L + +R+ +LGDML LG E
Sbjct: 317 KTGMRNE-LVYAEGFTILNDSYKSNPSSVLAALDTLYHMEQYSQRIAVLGDMLGLGEDEI 375
Query: 405 ESHEKILSYCCDACIDLIGLVG 426
HE I ID + +G
Sbjct: 376 AMHEDIGKKIDPEKIDYLFTIG 397
>gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
strain TRS of Brugia malayi]
gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 455
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 203/410 (49%), Gaps = 28/410 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
W N I ++ G+ G G I TDTR + K F A+ G++FD H+F+
Sbjct: 4 WNTNNIIDATGGR----GKSGCHNLNISTDTRNIK--KGDLFIALKGKNFDGHDFLHEAF 57
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGSV 141
V+ N VQ +TL +L +MA Y RN + ++ +TGSV
Sbjct: 58 LKGAAAAVVSEDKYRNLPVIVVQ-------DTLKALHDMASYYIRNVLVNAEVIAITGSV 110
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L GV+ GN NN +G+ L+++ +LEMGM+ GEI
Sbjct: 111 GKTTTKDMLHTVLSQYGVSHVND-GNLNNNIGLPLTILKAPENCRYLILEMGMNKAGEIK 169
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL- 260
EL++++ P I V+ N+ H+E+ SL D+A+AK EI K +LN D+ L
Sbjct: 170 ELSKISNPNIAVITNIEPVHVENFSSLFDIAQAKLEILYGVKNNGTLILNKDNKYYDYLL 229
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
V R V V FG V L+ + GL +++ L +++ + G H +
Sbjct: 230 SHVDRDV--VSFGRSESATVCLLNVIKNDKGLNLKIRLN-NNQIMNCNLCVQGKHFVYSV 286
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG---IKIVNDAYNANPISTRAA 376
A AV G++L+++ ++L NF+ + R + ++ I +++D+YNA+P S +AA
Sbjct: 287 LAVVAVIQNLGLNLSKLPLALENFNITKGRGSVHKAKYNGKCIHLIDDSYNASPASMKAA 346
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
I L I N ++V +LGDMLELG+ H K+L +D + VG
Sbjct: 347 IRTL-GIYSNRRKVALLGDMLELGNKSITFHMKLLDSIVKYDVDKVYTVG 395
>gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium radiotolerans JCM 2831]
gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium radiotolerans JCM 2831]
Length = 482
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 195/420 (46%), Gaps = 40/420 (9%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT E+ ES G L I DTR L P FFAI G D H+F+ P+
Sbjct: 4 LWTREEL-ESATGGCLTGAERAISGASIDTRTLQPG--DLFFAIRGDARDGHDFV-PDAL 59
Query: 84 GKGCVGVIGNQVCNNWDKGF---VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G+G + + + V G L ++V + AR +R S +V VTGS
Sbjct: 60 GRGAGAAVVSAARAEALAAHGPVLAVPEGGADPVLTAMVRLGAAAR-ARTSAQVVAVTGS 118
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+ TK + L G S ++NN GV L+L + R+ V E+GM+ EI
Sbjct: 119 VGKTGTKEALRHVLSEQG-ETHASAASYNNHWGVPLTLTRMPRSARYGVFEIGMNHGAEI 177
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP----L 256
+ L RP+I ++ + +H+E SL +A AKGEIF + G V +LN D P L
Sbjct: 178 VPLTAQVRPDIALITTIAPAHIEHFASLAAIADAKGEIFSGLRPGGVAILNRDAPHFDRL 237
Query: 257 VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER---------EMVKFV 307
A+ R R V FG DVR +++VL + + V +
Sbjct: 238 AAHAQASRAGRVVTFGEHPDADVR-----------ALKIVLRPDLSVIDAAVMGQPVTYK 286
Query: 308 IPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE---LLVSRSGIKIVND 364
+ + G H A+N+ AV G LA+ +SL +P R E L + +V++
Sbjct: 287 LGTAGRHAALNSLGVMAVVHSLGADLARAALSLGGLTPPAGRGERTALEIGGGTAYLVDE 346
Query: 365 AYNANPISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+YNANP++ RAA+ L I G+R+ +LGDMLELG+ + H + A +DL+
Sbjct: 347 SYNANPVAVRAALATLAGIETGPRGRRIAVLGDMLELGAAAPDLHRGLAEAIEAARVDLV 406
>gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 453
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 203/388 (52%), Gaps = 17/388 (4%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+NE+ ++++G++L G I TDTR + +KN F A+ G +F+ + ++ +
Sbjct: 3 LTLNEVLKAIDGELLIKNNEGSFEKISTDTRKI--DKNSLFIALKGNNFNGNNYVVEAIK 60
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
V +I ++ DKG V + + +L +A Y R + +VG+TGS
Sbjct: 61 AGATVAIIDEVNFKLEELNDKGTVIKVTDAKI----ALGALAKYYR-EKLGIKVVGITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK++TK ++A A S +VF++ GN+NN +G+ L + +D + DIAVLEMG + EI
Sbjct: 116 TGKTSTKDLVA-AFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +ARP++ ++ NVG SH+E L + E++ + K I K + V+N ++ ++ +
Sbjct: 175 HRLTNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQKV 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ G+ + D+ ++ V E +F + G H +NA
Sbjct: 235 NEDHEFKIEKIGYDKKYDLYAENIELTEESTSFDAV-NSNGERHRFKLNMVGEHNILNAL 293
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
++ FG++ ++ + L+NF MR E + ++ I+ND YNA+P S ++A+ +L
Sbjct: 294 LGIRISENFGITFEEMELGLNNFEATSMRLE-FIKKNNFTIINDCYNASPDSMKSALSVL 352
Query: 381 KDIACNGKRVVILGDMLELGSTERESHE 408
K + +++ +LGDM ELG + SHE
Sbjct: 353 KTYSG-SRKIAVLGDMGELGDHAKSSHE 379
>gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis
ATCC 367]
gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus brevis ATCC 367]
Length = 461
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 198/400 (49%), Gaps = 16/400 (4%)
Query: 31 EIAESVNG--KILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EIA +V +WG + + D+R L P F +TG+H D H+FI + G
Sbjct: 7 EIAHAVGAINDFEQWGSVSVTSVAFDSRHLQPGG--LFIPLTGEH-DGHQFIQSAI-DHG 62
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
V + + + F ++ + ++ L +L N R +V VTGS GK+TT
Sbjct: 63 AVATLWARDLASAPADFPVIQVDDSLKALQTLAQYYLSKINPR----VVAVTGSNGKTTT 118
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K MIA L S NV +++ N+NN +GV ++++ ++ ++ V+EMGM G++ L+++
Sbjct: 119 KDMIAAVL-STQFNVTKTHANFNNEIGVPMTVLSMEPNTEMLVVEMGMDRPGQLDFLSQL 177
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266
P++ ++ +G++H+E G+ + +A AK EI V V N D+PL+
Sbjct: 178 VSPDLALITMIGEAHIEFFGTRDKIADAKMEITHGLSDDGVFVFNGDEPLLRERATELTQ 237
Query: 267 RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVA 326
R+V FG ++G D L A V + E V F IP G + NA AA +VA
Sbjct: 238 RQVTFG-QQGTD-DLFATDVTGTPTTTSFTTNQWPE-VTFTIPMIGTYNVNNALAALSVA 294
Query: 327 TLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN 386
L+ + +L+ S + R+E + S SG I++D YN+NP + + +
Sbjct: 295 MLYRIRPESAKQALATVSLTENRAEWVTSASGAAILSDVYNSNPTAAKEVLTAFSQTPVT 354
Query: 387 GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+R V+LGDMLELG H + S ID + LVG
Sbjct: 355 GQRYVVLGDMLELGDQADAMHASLASAIDATKIDHVYLVG 394
>gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor bescii DSM 6725]
gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor bescii DSM 6725]
Length = 448
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 210/400 (52%), Gaps = 22/400 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA++VNG+ LK ++ + I + + K+ F + G FD H+F+ L
Sbjct: 3 LW-LSEIAKAVNGE-LKNFSTDVLVKNFSINSKSIGKDTLFIPLRGSRFDGHDFVKEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I + ++ +V+V +TL +L ++A +AR +VGVTGSVGK
Sbjct: 61 N-GAISFISQKDFDDLKVPYVKVG-----DTLLALQSLAYFARRKLNDLKVVGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L SL F++ GN+NN +G+ +S++ + +AV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-SLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++ +P+I V+ N+G +H+E+L S ++ AK EI + ++N D+ ++ NL
Sbjct: 174 SQITKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDIL-NLHKK 232
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
RKV G + R Q G +V + + I S H N+ A
Sbjct: 233 EFKRKVVTIGIENESNFRAQNVQKHQNGFSFEV------DNYTYFIKSFNFHDIYNSLFA 286
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AV T+ + + ++ ++ R E ++++ I +V+D YNA+ S +AID + +
Sbjct: 287 IAVGTILEIDRELIKEAIRQKERLKRRFE-VINKGSITVVDDTYNASTHSMLSAIDSICE 345
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+GK++++LGDMLELG E H ++ Y ID++
Sbjct: 346 F--DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDVV 383
>gi|365926645|ref|ZP_09449408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420264911|ref|ZP_14767510.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394429547|gb|EJF01975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 455
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 197/381 (51%), Gaps = 12/381 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR L + F + +H D H++I + G V + + D+ V +
Sbjct: 28 VSFDTRSL--EQGALFIPLAAEH-DGHDYIKNAI-DSGAVATLWQE---GHDESTVSIPK 80
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y + + +V +TGS GK+TTK M+A A+ NV +++ N+
Sbjct: 81 LVVPDNLQALQKLAHYYLQ-KINPKVVAITGSNGKTTTKDMVA-AILGRRFNVKKTHDNF 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV ++++ ++ + V+EMGM GE+ EL+R+ P++ V+ +G++H+E G+
Sbjct: 139 NNFIGVPMTVLSMEPNTEALVIEMGMDHFGELDELSRLVEPDVAVITMIGEAHIEFFGTR 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ +A AK EI K + + N D+PL+ T FG D+R + V+N
Sbjct: 199 DKIADAKMEITHGLKEDGLLIYNGDEPLLVQRTKKIDQETTTFGTSDNVDLRALNI-VSN 257
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
V + E E FVIP G + INA AA +V F + + ++ ++ +F +
Sbjct: 258 DKETSFRVAQWENE--NFVIPMIGSYNVINALAALSVGEFFRIPVEEMKKAIRSFDLTKN 315
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R++ L G +I++D YN+NP + R I + A GKR++++GDML+LGS +E HE
Sbjct: 316 RTQWLQGAKGERILSDVYNSNPSAARLVITAFSNAATAGKRIIVIGDMLQLGSNSKEMHE 375
Query: 409 KILSYCCDACIDLIGLVGDRV 429
+ ID + L G+ V
Sbjct: 376 SLAEVIDPDKIDSVYLCGEEV 396
>gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
Kuenenia stuttgartiensis]
Length = 484
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 207/419 (49%), Gaps = 33/419 (7%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELYGK 85
++ E+ ++VNGK + G++ + + N K FFAI G H+D +FI + +
Sbjct: 7 SLEEVIQAVNGKAIS-NVSGLMVNGVSVDSRNVHKGNVFFAIKGDHYDGRQFIE-QAFDA 64
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGN-------GNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G +GV+ ++ +G + + G +V T +L ++A + R + + ++G+T
Sbjct: 65 GAIGVVVSK------QGGIDISGKCLPLILVDDVKT--ALGDLARHYRR-KLNAKIIGIT 115
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+ L V + ++NN +GV L++ I+ +LEMG + G
Sbjct: 116 GSNGKTTTKEMLYHLLSHF-APVVKPQKSFNNFIGVPLTIFEIESKHKYGILEMGTNAPG 174
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EIL L+ + P+I V+LN+ +HLE LGS+E VA KG+I + K V V NAD+PL
Sbjct: 175 EILRLSEIGLPDIAVILNISKTHLEGLGSIEGVALEKGDILKNLKENGVFVYNADNPLCC 234
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE-----------REMVKFV 307
+ G K+ FG + +R A+ G + ++ R +
Sbjct: 235 EIADKFGGNKISFGLGQNAQIRGTDAKKKGNGSVFTIDIDYNTFRLCGVKGGGRRQFEIQ 294
Query: 308 IPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367
+ PG H N A+ AV G+ ++ + + +F MR + + +NDAYN
Sbjct: 295 LQVPGHHNISNCLASFAVCHALGLDISGLYNAFLSFKMPDMRIDSQ-QIGNVTFINDAYN 353
Query: 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
ANP S AA+ ++I G+++ I GDMLELG H+++ +DL+ VG
Sbjct: 354 ANPESVFAALKYFEEIDAAGRKIFICGDMLELGKESHALHKELGEKASTLNLDLLWTVG 412
>gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlorobium phaeovibrioides DSM 265]
gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlorobium phaeovibrioides DSM 265]
Length = 473
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 205/388 (52%), Gaps = 16/388 (4%)
Query: 48 IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVE 107
++ D+R + + F A+ G+ D H F+ +++ +G V+ ++ + +
Sbjct: 32 VVSIDSRKV--EEGGIFVALPGERTDGHRFVD-DVFRRGARMVMVSREWYSASGSPLPPP 88
Query: 108 GNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G G + +T++ L +A R S FS +VGV GS GK+TTK M+ L S + V S
Sbjct: 89 GRGTLVVQDTVSGLQQLAAIYRES-FSIPVVGVGGSNGKTTTKEMLGAVL-STAMRVHMS 146
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
+ N NN +GV L+L+ + R +IAV+EMG++ GE+ L +ARP ++ N+G HLE
Sbjct: 147 HANLNNHLGVPLTLLAMRRETEIAVVEMGINHPGEMELLTSIARPSHGLLTNIGHEHLEF 206
Query: 225 LGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLVANL-TVPRGVRKVFFGWRRG--CDVR 280
L +L+ VARA+ +F + G +N DDP + + T P+ R + +G G C R
Sbjct: 207 LVNLDGVARAERALFSFLDETGGTIFVNNDDPRLRDAATDPQ--RHILYGMHCGDCCSCR 264
Query: 281 LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
A V G ++ +L ER + + G H +NA AAAAV FG+ +V L
Sbjct: 265 GGALSVLPDG-SLRFMLYSERGDEEIRLNFTGRHNVLNALAAAAVGIFFGIEPREVRRGL 323
Query: 341 SNFSPVQMRSEL-LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLEL 399
P + L +VS G+ ++ND YNANP S R AID L D+ C G+R+ ++GDMLEL
Sbjct: 324 EGLVPREGWKRLEVVSAGGVTLLNDTYNANPDSMRLAIDALLDMPCQGRRIAVIGDMLEL 383
Query: 400 GSTERESHEKILSYCCDACIDLIGLVGD 427
G HE Y + +D+I G+
Sbjct: 384 GDAGPGEHEATGKYLAGSSVDMIFSFGE 411
>gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ruminococcus bromii L2-63]
Length = 450
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 210/387 (54%), Gaps = 21/387 (5%)
Query: 27 WTINEIAESVNGKI-----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+T+ EIA++ NG+ LK + D+R + F AI G+ D H+FI +
Sbjct: 4 FTLAEIAKACNGEYVGDESLKHTKITSVERDSRQV--KNGSLFLAIKGERVDGHDFIE-K 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ +G V + + N K + V +TL+++ + A +F ++G++GSV
Sbjct: 61 CFAQGAVCALCEKAPENATKPCIVVP-----STLDAVKKIG-RAYREKFDIPVIGISGSV 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK M+ L S ++ GN NN +GV L+L+ + + AV+EMG+S GE+
Sbjct: 115 GKTSTKEMLYAVL-SQKFKTHKTQGNLNNELGVPLTLLSMPEDTEAAVIEMGISDFGEMT 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
L+ M +P I V+ +G+ HLE+LG + V +AK E+F+ ++ +LN DD ++ +
Sbjct: 174 RLSEMVQPTICVLTIIGECHLENLGDRDGVLKAKTEMFKNARENADFILNGDDDKLSTVK 233
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLG-VQVVLEKEREMVKFVIPSPGLHLAINAC 320
G + VFFG D A + N G G V L + + IP+ G ++ NA
Sbjct: 234 TVNGKKPVFFGLDAKND--FYAKNIKNSGDGKVLATLCFDNNNIDVEIPAIGTYMVTNAL 291
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AAAA L G++ ++ ++++ V R+ +++ IKI++D YNANP S RA++D L
Sbjct: 292 AAAAAGKLLGLTDEEIANGVASYKTVGSRAN-VINTGKIKIIDDCYNANPTSVRASLDTL 350
Query: 381 KDIACNGKRVVILGDMLELGSTERESH 407
++ +G++V ILGDM ELGS E + H
Sbjct: 351 SNL--DGRKVAILGDMKELGSEELKLH 375
>gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
proteobacterium HTCC2080]
gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
proteobacterium HTCC2080]
Length = 456
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 194/379 (51%), Gaps = 15/379 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + P F AI G D H+++ L ++ QV + + V +
Sbjct: 31 LAIDSRQVKPG--DLFVAIPGVKVDGHDYLEAALERGAGAALVQQQVSSALPQLIVS-DS 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ T ++ A + G+LVG+TGS GK+T K+M+A L G +V + GN
Sbjct: 88 EAALQTFGAMTRAA-------YDGILVGITGSAGKTTAKNMLAEILSRAG-SVVATKGNQ 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L ++ + AVLE+G G+I L MARP I ++LNV +HL + GSL
Sbjct: 140 NNELGVPLTLADLNNDTEYAVLELGAGKPGDIARLCEMARPNIAILLNVAPAHLANFGSL 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAAQVA 287
+ +++ KG + + + V+NADDP V + V R + FG D + + Q+
Sbjct: 200 DAISKTKGALLDDLPADGLAVINADDPRVFDWHVRASPTRCLTFGMNCKADYQAIDLQL- 258
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
G G VL+ + V+ + PG NA AAAAVA G+S + L+ P
Sbjct: 259 KGFSGSDFVLQTPEQDVEVTLNVPGRQGIYNALAAAAVADALGISAITIREGLAAVKPAP 318
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R + V +++D YNANP++ RAAID+L + G+R ++LG MLELG E + H
Sbjct: 319 GRGGVAVLSPDASLIDDTYNANPVAVRAAIDVLA--SEPGRRRLVLGAMLELGLDEEKLH 376
Query: 408 EKILSYCCDACIDLIGLVG 426
++ Y +A +D + VG
Sbjct: 377 AELGVYAREAGLDELWAVG 395
>gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
101-4-CHN]
gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
101-4-CHN]
Length = 459
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 207/406 (50%), Gaps = 16/406 (3%)
Query: 29 INEIAESVNGK--ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
I EIA +V+ + I +W + + D+R L KN F D HEF++ +
Sbjct: 5 IAEIARAVDAQNDIEQWSEIEVSGVAFDSRKL---KNGDLFVPLQGARDGHEFVATA-FQ 60
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
G + + D G+ ++ + + L L + + + ++V V+GS GK+
Sbjct: 61 NGASATLWAADRSYEDDGYPRIVVDDPLAALQQLGKYYLH----KINPLVVAVSGSNGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK MIA L S +NV ++Y N+NN +GV ++L+ ++ + V+EMGMS GE+ EL+
Sbjct: 117 TTKDMIASIL-STQMNVTKTYANFNNAIGVPVTLLNMESNTEAVVVEMGMSHFGELDELS 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++ P+I V+ +G++H+E GS + +A AK EI + V N D+PL+
Sbjct: 176 KLVTPDIAVLTMIGEAHIEFFGSRDRIADAKMEITHGLREDGTFVYNGDEPLLRERAKDL 235
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
+ FG + D+ + + ++ L +V L + E F IP G + NA AA
Sbjct: 236 KQGQKTFGRQLDNDIYATSVEQSDHDLRFKVNLWPDEE---FTIPMIGEYNVNNAMAAMM 292
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
V L V+ + + I L+N + R+E L + G KI++D YN+NP + + ++ L ++
Sbjct: 293 VGHLLHVTPSHLKIGLANVELTENRAEWLTGQQGEKILSDVYNSNPTAVKEVLETLNELP 352
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
G+R+++LGDMLELG + H + + + LVG+ +
Sbjct: 353 ETGRRLIVLGDMLELGDASAKLHAGLATEIDHQHFQKVFLVGNEMT 398
>gi|410667609|ref|YP_006919980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Thermacetogenium phaeum DSM 12270]
gi|409105356|gb|AFV11481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Thermacetogenium phaeum DSM 12270]
Length = 462
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 134/406 (33%), Positives = 213/406 (52%), Gaps = 20/406 (4%)
Query: 28 TINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ EI ++V G+++ G I D+R + + FFA G D H+F+ L
Sbjct: 5 TLEEIVKAVQGRLVHGGREEKITGVSIDSRKV--RRGDLFFAFPGARNDGHDFVGQALKA 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
V+ V + +K + V + L +L +A Y R F+ +VG+TGS GK+
Sbjct: 63 GAAAAVVTRPVKDAKEKPLILVS-----DPLEALQGLARYYRRL-FNIPVVGITGSTGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK +IA L V ++ GN+NN +G+ L+L+ ++R+ +AVLEM M G+GEI L
Sbjct: 117 TTKDIIAGVLGKR-WRVLKNEGNYNNEIGLPLTLLRMERSHQVAVLEMAMRGRGEIAALC 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+ +P++ V+ N+G +HLE LGS E +A AKGE+ + VLNA+DP L
Sbjct: 176 EIGQPQVGVITNIGKTHLELLGSQEAIAEAKGELLEALPPDGCAVLNAEDPWQLRLASRV 235
Query: 265 GVRKVFFGWRRGCDVRL--VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
+F+G C VR+ + Q + GV+ +L V +P PG H NA AA
Sbjct: 236 RGEVIFYGMEENCAVRVSDITLQELD---GVKFLLRTPSGEVPCFLPIPGRHNVYNALAA 292
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AAV FG++ ++ L + S MR E+ +G+++++D+YNA+P S +AA+
Sbjct: 293 AAVGHYFGLTPEEIASGLGSPSRTGMRLEIKDGMNGVRVIDDSYNASPASVKAAL--ELL 350
Query: 383 IACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
A G+R + +LGDM ELG+ H ++ +D + VG+
Sbjct: 351 AAARGRRKIAVLGDMYELGTESLSGHREVGEKAALLHVDCLCTVGE 396
>gi|334316875|ref|YP_004549494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti AK83]
gi|384535590|ref|YP_005719675.1| probabable udp-n-acetylmuramoylalanyl-d-glutamyl- 2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Sinorhizobium meliloti SM11]
gi|407721212|ref|YP_006840874.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti Rm41]
gi|334095869|gb|AEG53880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti AK83]
gi|336032482|gb|AEH78414.1| probabable udp-n-acetylmuramoylalanyl-d-glutamyl- 2,
6-diaminopimelate--d-alanyl-d-alanyl ligase protein
[Sinorhizobium meliloti SM11]
gi|407319444|emb|CCM68048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti Rm41]
Length = 477
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 136/415 (32%), Positives = 208/415 (50%), Gaps = 25/415 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GI I D+R + + FFAI G D H++ L
Sbjct: 4 LWTSSDLLAAMNGRPVGNLPEGITGISIDSRTI--GDGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + V+ + L +++ + C AR+ R + ++ VTGS
Sbjct: 62 NGAALLVVSEAKLPALGRLIAPMIVVD-----DVLEAMIRLGCAARD-RSAAKIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L LG V S ++NN GV L+L + D V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPLG-RVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L L RM RP + VV ++ +HL + SL+++A AK EIF+ G V+N D L+
Sbjct: 175 LPLTRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
GV V FG + RL A+ A G G + ++ I +PG H+A
Sbjct: 235 ERAAAAAGVSHVHSFGANPRSEFRL--AEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA AA A ATL G +V S + P + +R L + + +++++YNANP S
Sbjct: 293 ENALAAIAAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASM 352
Query: 374 RAAIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
RAAI LL+D A G+R+ +LGDMLE+G H + +A I + L G
Sbjct: 353 RAAISLLRDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAG 407
>gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium tepidum TLS]
gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
tepidum TLS]
Length = 476
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 195/389 (50%), Gaps = 33/389 (8%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ--VEGNGNV-------NT 114
F A+ G+ D H F+ E++ G + V W FV+ E G+ +
Sbjct: 47 FVALPGERTDGHRFVG-EVFANGASWAV---VSREW---FVEKGAEHQGDDRRFLVADDP 99
Query: 115 LNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGV 174
+ + +A R RF ++G+ GS GK+TTK M+A L S NV + GN+NN +GV
Sbjct: 100 VKAFQQLAAAYRE-RFDIPVIGIGGSNGKTTTKEMLAAVL-STSFNVLVTQGNYNNHLGV 157
Query: 175 ALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARA 234
L+L+ + R ++AV+EMG++ GE+ L+ +A+P ++ N+G HLE GSL+ VA A
Sbjct: 158 PLTLLQMRRDTEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNIGHEHLEFFGSLDGVADA 217
Query: 235 KGEIFQE-SKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG- 292
+ +F+ G +N DD +A RK +G + G A Q+ +G
Sbjct: 218 EAALFRYLEAHGGTAFVNLDDHRLAAAGASLS-RKTGYGAQPGAGRAWWAEQIGADRVGR 276
Query: 293 VQVVLEKEREMVKFV-IPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ--MR 349
V L E + + V + G H INA AA+AV FG++ A + L P + R
Sbjct: 277 VSFTLCSESGVHQPVAMQFVGRHNVINAVAASAVGAHFGLAPAHIAEGLGTLLPAKGWKR 336
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
EL GI ++ND YNANP S R A+D L I C G+R+ +LGDMLELG HE
Sbjct: 337 MELF-EDGGIVVLNDTYNANPDSVRLALDTLAAIECRGRRIAVLGDMLELGDNSAIEHES 395
Query: 410 ILSYC----CDACIDLIGLVGDRVVVQCK 434
I Y DAC+ L GD + C+
Sbjct: 396 IGRYIRQLPLDACLTL----GDAAQLICE 420
>gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Sinorhizobium meliloti 1021]
gi|384530064|ref|YP_005714152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti BL225C]
gi|433613963|ref|YP_007190761.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sinorhizobium meliloti GR4]
gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti 1021]
gi|333812240|gb|AEG04909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti BL225C]
gi|429552153|gb|AGA07162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sinorhizobium meliloti GR4]
Length = 477
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 136/415 (32%), Positives = 208/415 (50%), Gaps = 25/415 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GI I D+R + + FFAI G D H++ L
Sbjct: 4 LWTSSDLLAAMNGRPVGNLPEGITGISIDSRTI--GDGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + V+ + L +++ + C AR+ R + ++ VTGS
Sbjct: 62 NGAALLVVSEAKLPALGRLIAPMIVVD-----DVLEAMIRLGCVARD-RSAAKIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L LG V S ++NN GV L+L + D V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPLG-RVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L L RM RP + VV ++ +HL + SL+++A AK EIF+ G V+N D L+
Sbjct: 175 LPLTRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
GV V FG + RL A+ A G G + ++ I +PG H+A
Sbjct: 235 ERAAAAAGVSHVHSFGANPRSEFRL--AEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA AA A ATL G +V S + P + +R L + + +++++YNANP S
Sbjct: 293 ENALAAIAAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASM 352
Query: 374 RAAIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
RAAI LL+D A G+R+ +LGDMLE+G H + +A I + L G
Sbjct: 353 RAAISLLRDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAG 407
>gi|423555049|ref|ZP_17531352.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MC67]
gi|401197389|gb|EJR04320.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus MC67]
Length = 454
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 178/329 (54%), Gaps = 8/329 (2%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL +L +A + R + ++G+TGS GK+T K +I+ L S V ++ GN+N+++
Sbjct: 87 DTLFALQQLAQFYR-KELNVKVIGITGSNGKTTVKDIISTIL-STTHRVHKTKGNFNSQI 144
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ L+++ + R + +LEMGMS KG+I L+++A+P++ V+ +G SHLE+LGS E++A
Sbjct: 145 GLPLTILEMKRDTEFLILEMGMSEKGQIRNLSKIAQPDVAVITMIGQSHLETLGSREEIA 204
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
+AK EI K + + N D+PL+ + FG + D L V G
Sbjct: 205 KAKLEIIDGLKGNGLFLYNGDEPLLLQNKNLSSINCKAFGEKYTND--LFPTNVQLDEYG 262
Query: 293 VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
V L + +++ +P G H +N AV + + ++ +L + MR +
Sbjct: 263 VHFKLNDSK--IQYDVPLHGKHNILNTIVGIAVGQFYNILTEKIQEALRQVNITHMRFQF 320
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
L +++G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG H +I
Sbjct: 321 LTAKTGFTIINDAWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGK 380
Query: 413 YCCDACIDLIGLVGD--RVVVQCKWRKWS 439
I + G+ +V + +K+
Sbjct: 381 MLNQESIQYVFTYGELAEIVAEEARKKYD 409
>gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
[Brevibacillus brevis NBRC 100599]
gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
ligase [Brevibacillus brevis NBRC 100599]
Length = 460
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 188/377 (49%), Gaps = 20/377 (5%)
Query: 40 ILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ- 94
IL G PG+ + DTR L F A+TG D H+F+ ++ NQ
Sbjct: 16 ILIAGSPGLALSSVHFDTREL--TVGSLFVALTGGARDGHDFLLQAAEQGAVAALVSNQE 73
Query: 95 -VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALA 153
+ + F + N +TL +A R S FS + +TGS+GK+T K ++A
Sbjct: 74 KIPGDLPNDFGLILVN---DTLRGFQKLAAAYRKS-FSFPRIAITGSIGKTTVKDIVAHV 129
Query: 154 LESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRV 213
L S V+++Y N+NN +GV LSL+ ++ AVLE+GM+ GEI LA + +P+I V
Sbjct: 130 LASRS-PVYKTYKNFNNHIGVPLSLLQMEENHQAAVLELGMNHAGEIDLLASLVQPDISV 188
Query: 214 VLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVANLTVPRGVRKVF 270
+ +G+SH+E G+ E +A AK E+ + L + +LN D L+A+L P + ++
Sbjct: 189 ITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLLNKDSEYLRLIAHL-YPGEL--MY 245
Query: 271 FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFG 330
+ D+ + GG +V L E + +P G H +NA A A+A G
Sbjct: 246 YSVNEKADIWAEQIETVEGGTRFKVYL-ASGEYFEAFLPLHGRHSVLNALPAVAIAKRLG 304
Query: 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRV 390
+ Q+ +LS MR E + + ++DAYNA+P+S AA+ ++ R+
Sbjct: 305 MDTEQIAYALSTVQLSAMRFEQINGKHATVYISDAYNASPVSMEAAVRTFAELYPECARI 364
Query: 391 VILGDMLELGSTERESH 407
V+LGDM ELG R H
Sbjct: 365 VVLGDMYELGPDSRAMH 381
>gi|407798446|ref|ZP_11145353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Oceaniovalibus guishaninsula JLT2003]
gi|407059407|gb|EKE45336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Oceaniovalibus guishaninsula JLT2003]
Length = 470
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 143/422 (33%), Positives = 206/422 (48%), Gaps = 33/422 (7%)
Query: 24 SPIWTINEIAESVNGKILK-WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+P+WT + A + G W G+ DTR L P F D H+F++ L
Sbjct: 2 TPLWTGRDAAAATGGDPRGGWAATGV-SIDTRTLQPGD---LFVALADRRDGHDFVARAL 57
Query: 83 YGKG---CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
V I + V D + V + L L + R+ R +G +V +TG
Sbjct: 58 AAGAAAAMVSRIPDDVAP--DAPLLVVP-----DVLAGLTALGRAGRD-RMTGRVVAITG 109
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK++TK M A A + + V + ++NN GV L+L + +A++E+GM+ GE
Sbjct: 110 SVGKTSTKDM-ARAAFAPQMRVHAAEASYNNHWGVPLTLARMPADAQVALVEIGMNHPGE 168
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD---DPL 256
I L+R+ARP +V VG +HLE+ L+ +AR K IF K G + NAD P+
Sbjct: 169 IAPLSRLARPHAAIVTTVGAAHLEAFEDLDGIAREKAAIFAGLKPGGTAIFNADIPAAPI 228
Query: 257 VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFV--IPSPGLH 314
+ + G R FG G D R+VA N +V+E E + I +PG H
Sbjct: 229 LRDAAQAAGARLRPFGHAPGSDPRIVAVTPVND----LIVVEAEMAGHPLLCRIGAPGRH 284
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS--ELLV----SRSGIKIVNDAYNA 368
LA NA A A A G + I L++++P R E +V SGI +++DA+NA
Sbjct: 285 LAHNAMAVLAAAEAVGADPVRAAIDLAHWTPGAGRGVRERVVLDPEDGSGIDLIDDAFNA 344
Query: 369 NPISTRAAID-LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
NP S AA+D LL G+R+ ILGDMLELG TER+ H I + ID+I G
Sbjct: 345 NPASMAAALDTLLATKPAGGRRMAILGDMLELGRTERDLHAAIARHPGLDRIDVIHCAGP 404
Query: 428 RV 429
R+
Sbjct: 405 RM 406
>gi|379726994|ref|YP_005319179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Melissococcus plutonius DAT561]
gi|376317897|dbj|BAL61684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Melissococcus plutonius DAT561]
Length = 461
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 209/407 (51%), Gaps = 18/407 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
W I ++ ++ N +W I I D+R LA F G D H+FI +
Sbjct: 5 FWEIADVVQATNN-WKQWSDFTINTIEFDSRQLASGS---LFIPLGGKTDGHQFIM-DAR 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+G + ++ + +GF +E V+TL ++ ++A Y + + ++ VTGS GK
Sbjct: 60 SQGAKAALWSKESSLAPEGFPILEV---VDTLKAMQDLAMYYL-KKLAPQVIAVTGSNGK 115
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA L + +++ GN+NN++G+ +++ + ++ VLEMGM GEI L
Sbjct: 116 TTTKDMIAAVLAKKYI-TYKTQGNYNNQIGLPYTILHMPEETEMLVLEMGMDHAGEIDFL 174
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A P + + +G++H+E+LGS +++A+AK I + + ++ ++PL+ LT
Sbjct: 175 SQLASPTVAAITMIGEAHIENLGSRQEIAKAKMGITKGLVEDGLLIIPENEPLLKPLTAN 234
Query: 264 RGVRKVFFGWRRGCD-VRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
FG+ D V V + N + + + F IP PG + NAC A
Sbjct: 235 STQTIKTFGFTNEADFVECVQLEEKN-----KTTFKLSGYQLPFTIPVPGKYNVDNACIA 289
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
+ F V ++ +L+ + R+E + + +G++I++D YNANP + +D
Sbjct: 290 LIIGKWFQVPEKEMQQALAEVHLTKNRTEWVTANNGVEILSDVYNANPTAVSLVLDSFGQ 349
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+ NG+R+ +LGDMLELG+T + H+++ + A I + L G +
Sbjct: 350 MFTNGRRIAVLGDMLELGATSKMMHQQLSKHLFPAIIQEVFLYGTEM 396
>gi|386714172|ref|YP_006180495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halobacillus halophilus DSM 2266]
gi|384073728|emb|CCG45221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Halobacillus halophilus DSM 2266]
Length = 453
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 190/375 (50%), Gaps = 26/375 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-------VCNNWDK 101
+ TDTR+ A K F I G++FDAH+FI + +G V + + V ++
Sbjct: 28 VLTDTRVEA--KQSLFIPIVGENFDAHDFIKDAI-KQGAVAALWQKDKDLPYAVPTDFPV 84
Query: 102 GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
FV+ +T L +A Y + +++G+TGS GK+TTK M A L S
Sbjct: 85 FFVE-------DTTKGLQEVAEYYLQ-KVRPLVIGITGSNGKTTTKDMTASVL-SRKYKT 135
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221
++ GN+NN +G+ L+++ + ++ VLEMGM GEI L+++A P+ ++ N+G+SH
Sbjct: 136 HKTAGNYNNHIGLPLTILAMKEDTEVLVLEMGMDRAGEISVLSKLAHPKYAIITNIGESH 195
Query: 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281
+E+LGS E +A AK EI +++ D+PL+ + + R + G+ D ++
Sbjct: 196 IENLGSREGIASAKLEIKDGMSEDGALIIDGDEPLLHAVKLDE--RSLSCGFDSTSDTQV 253
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
++ +V E+E + +P G H NA +A G+S Q+
Sbjct: 254 KIISTSDDASEFKV---NEKET--YNLPLAGKHNVKNASYVITLAKKAGLSNDQIQEGFD 308
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
+ MR E + + I+NDAYNA+P S +A I+++ + ++V+ILGDM ELGS
Sbjct: 309 HLQMSSMRYEKHIGINESLIINDAYNASPTSMKALIEVMAQLTTKSRKVLILGDMFELGS 368
Query: 402 TERESHEKILSYCCD 416
R H + D
Sbjct: 369 QSRVLHRSVAEAVTD 383
>gi|323490562|ref|ZP_08095768.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Planococcus donghaensis MPA1U2]
gi|323395828|gb|EGA88668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Planococcus donghaensis MPA1U2]
Length = 452
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 178/323 (55%), Gaps = 19/323 (5%)
Query: 117 SLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL 176
+L MA R+ S +++G+TGS GK++TK ++A L+ V ++ GN+NN++G+ L
Sbjct: 88 ALQEMARAYRD-ELSAMVIGITGSNGKTSTKDLVASVLKPY-FKVQKTPGNFNNQLGLPL 145
Query: 177 SLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKG 236
+++ ++ +AVLEMGMSG+G+I L+ +ARP+ ++ N+G++HL+ LGS E +A AK
Sbjct: 146 TILSLEEDTKVAVLEMGMSGRGQIEFLSELARPDYAIITNIGEAHLQDLGSREAIAEAKF 205
Query: 237 EIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQ 294
EI + + D+PL+ P+GV FG+ ++ + + G
Sbjct: 206 EITAGLQQHGKLFYDGDEPLLQPFMEAFPQGVS---FGFDDNNELTVTDIKATESGSSFM 262
Query: 295 V--VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
V +++ F IP G H N AA VA G+S Q+ SL + + MR ++
Sbjct: 263 VSGIID-----AAFTIPVLGEHQVKNTLAAILVALEAGLSEEQIRKSLKDAALTDMRMQM 317
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
+ + +G +NDAYNA P S AA++ +++ K+ V+LGDMLELG E+ HE LS
Sbjct: 318 IQADNGAIFINDAYNAAPSSMNAALNFIRETTMKDKKWVVLGDMLELGDDEQSYHEA-LS 376
Query: 413 YCCDACIDLIGLVGDRVVVQCKW 435
C + + L G R+ KW
Sbjct: 377 KCISDNLVGVCLYGPRM----KW 395
>gi|347754356|ref|YP_004861920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Chloracidobacterium thermophilum B]
gi|347586874|gb|AEP11404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Chloracidobacterium thermophilum B]
Length = 472
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 199/397 (50%), Gaps = 36/397 (9%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG-CVGVIGNQVCNNWDKGFVQVEGNG 110
D+R + P FFAI G+ FDAH F+ PE+ +G C VI + ++E
Sbjct: 29 DSRTIRPG--DLFFAIHGKRFDAHAFV-PEVLARGACAAVI--------HRPLPELEPAA 77
Query: 111 N-----VNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+TL ++ +A A R+ +VG+TGS+GK+T K + AL L G ++ S
Sbjct: 78 ARCLLVPDTLRAMQELA-RALLHRWGRPIVGITGSMGKTTAKDLTALTLAPYG-RIYASV 135
Query: 166 GNWNNRVGVALS---LIGIDRAV---DIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
GN NN G+ L+ ++ R + D+AVLEMGM+ KGEI L +A P++ VVLNV
Sbjct: 136 GNLNNEYGLPLAVFQMLSDGRRMADYDVAVLEMGMNEKGEIARLCEIAPPDVSVVLNVAP 195
Query: 220 SHLESLGS-LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV--------PRGVRKVF 270
H+E+ LE +A AK EI K +LNADDP VA + G + ++
Sbjct: 196 VHIENFPDGLEGIAAAKAEIVHGLKPTGTAILNADDPRVARMAAIVLARRQEHSGAQVMY 255
Query: 271 FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFG 330
FG V + + G LG L + +P G H NA AAAAVAT FG
Sbjct: 256 FGRNEASHVTALDV-TSRGLLGTTFTLSTLKGQAAVELPLVGEHHISNALAAAAVATHFG 314
Query: 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRV 390
VS + L P R + G +V+D+YN+NP++ + A+ LL+ + +R+
Sbjct: 315 VSPDAIAAQLRLAQPGPHRGVVRRYAGGFTVVDDSYNSNPVALQEAVRLLEQVPDARRRI 374
Query: 391 VILGDMLELGSTERESHEKILSYCCDACID-LIGLVG 426
V+ G+MLELG RE H A +D L+G+ G
Sbjct: 375 VVAGEMLELGEQSREMHIACGRALAHARVDILLGVAG 411
>gi|374997240|ref|YP_004972739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus orientis DSM 765]
gi|357215606|gb|AET70224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus orientis DSM 765]
Length = 471
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 189/360 (52%), Gaps = 19/360 (5%)
Query: 62 QWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV-EGNGN--VNTLNSL 118
+ FFA+ G+ D H++I + KG V + +Q + V EG V+++ +
Sbjct: 39 EMFFALPGEKVDGHDYIESA-WQKGAVLAVADQAHFQGEMAKPSVPEGKALLLVDSVYTA 97
Query: 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
+ + + +VGVTGS GK+TTK MI L + V+ + N NN +G+ +++
Sbjct: 98 LQVLAQSWRKELKAKVVGVTGSNGKTTTKDMIYSVL-AQEFPVYCNKENHNNELGLPMTI 156
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ +I +LEMGM G GEI L +A+P+I V+ N+G +H+E L + E +A+AK E+
Sbjct: 157 LNAPLGTEILILEMGMRGLGEIKALCEIAKPDIGVITNIGTTHMELLLTQERIAQAKWEL 216
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR--------RGCDVRLVAAQVANGG 290
+ ++NADD A G + +F+G +G +R ++G
Sbjct: 217 IETLPKDGTAIINADDLYSAQKAKNDGHKILFYGLEGTFAEPDIKGSGLR------SSGP 270
Query: 291 LGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS 350
LG + ++E + +P PG H ++A AA AV T+ GVSL + + L +MR
Sbjct: 271 LGTIFDVTFKQETLTADLPLPGTHNVLDALAALAVGTVCGVSLTKGCLGLRALEMSKMRL 330
Query: 351 ELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
E+ ++ND YNANP+S +A++++LK+ A K + ILGDM ELG++ H+ +
Sbjct: 331 EMRQGCRETTLINDVYNANPVSMKASLNILKERAGQKKTLAILGDMYELGNSAESGHQDV 390
>gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanylligase [Thermocrinis
albus DSM 14484]
gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
DSM 14484]
Length = 441
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 193/370 (52%), Gaps = 25/370 (6%)
Query: 51 TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNG 110
TD+R + + F A+ GQ D H F+ E + +G VGV+ + + F V
Sbjct: 26 TDSRQV--EEGDVFVALKGQKHDGHSFVE-EAFRRGAVGVVVEREVPVKEGKFALV---- 78
Query: 111 NVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNN 170
++L +L ++A + RN+ F G +VG+ GS GK+TTK ++A L ++G V ++ N+N+
Sbjct: 79 VEDSLKALRSIALFKRNN-FKGKVVGIAGSAGKTTTKELVAHLLSAVG-KVCKTPKNYNS 136
Query: 171 RVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLED 230
++GV LS+ D V+EMG S KG++ +L ++ P +RV+ ++G+ HLE+ G L+D
Sbjct: 137 QIGVPLSVANFPEDCDFWVIEMGASAKGDVAKLTQLVIPHVRVITSIGEEHLETFGCLDD 196
Query: 231 VARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
V GEI + + V VL + VA+ R R V FG + + V
Sbjct: 197 VILGNGEILEGMREDHVAVLPS---YVAHCY--RVERAVLFGEGTPLSAQDLKLTVE--- 248
Query: 291 LGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS 350
GV+ V++ + + +P P L L N + V GV + L+ F PV+ R
Sbjct: 249 -GVRFVVKGK----EIFLPVPSLALVENILCSLGVMEALGVDWTTLLDKLTTFRPVEGRF 303
Query: 351 ELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L S G I++D+YNANP+S + AI+ L G R+ +LGDMLELG E H +
Sbjct: 304 RTL-SVMGATIIDDSYNANPLSVKKAIESLS--LMEGHRIAVLGDMLELGEKAEELHRDV 360
Query: 411 LSYCCDACID 420
+C + ID
Sbjct: 361 GRWCAEKRID 370
>gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5]
gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5]
Length = 445
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/389 (33%), Positives = 201/389 (51%), Gaps = 35/389 (8%)
Query: 31 EIAESVNGKILKW---GPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+I KILK G P I D+R + + + F + GQ FDAH FI P+ +
Sbjct: 2 QITSQTLAKILKGSLVGSPNIPVKTFSIDSRTI--KQGEVFIPLKGQKFDAHNFI-PDAF 58
Query: 84 GKGCVGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KG VGVI + + K ++V +TL SL +A + R + F G ++GV GS G
Sbjct: 59 KKGAVGVISEREVDVPPGKFLIKVR-----STLESLREIAKFKREN-FKGKVIGVAGSAG 112
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK +++ L S+ V++S GN N++VG+ L++ D VLE G S +GEI
Sbjct: 113 KTTTKELLSHLL-SIKGKVYKSPGNLNSQVGLPLAVANASLETDFWVLEHGASKRGEIKN 171
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-T 261
L + +P +R++ +G+ HLE GSLE V E+F ++ D + L
Sbjct: 172 LIEITKPHVRLITTLGEEHLEGFGSLEGVIWGNAEMF--CRISDNFYAVIPGKFLDTLFF 229
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+P +K+ FG R +++ +V+ G+ +V E KF I P L L N A
Sbjct: 230 LP---KKISFGER--GELQAQNVEVSEKGVSFEV------EGEKFFISVPSLGLVENILA 278
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
V + G +L + +L FSPV+ R ++ ++ I +++D YNANP+S R AI +
Sbjct: 279 CFCVLKVLGFTLKEFKEALKEFSPVEGRMKVFNLKNFI-LIDDTYNANPVSLRNAIKSVG 337
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKI 410
A +V ILGDMLELG +E HE++
Sbjct: 338 --AFKRDKVFILGDMLELGEHSKELHEEV 364
>gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
luteolum DSM 273]
gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlorobium luteolum DSM 273]
Length = 476
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 203/389 (52%), Gaps = 27/389 (6%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVN 120
F A+ G+ D H F+ +++ +G + ++ ++ +K V G + +T L
Sbjct: 46 FIALRGESTDGHRFVQ-DVFRRGADFAMVSREWHSLEKDPVPPPGKAYIVVQDTEKGLQE 104
Query: 121 MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG 180
+A R++ F +VG+ GS GK+TTK M A L + G V S GN+NN +GV ++L+G
Sbjct: 105 LASIYRDT-FPIPVVGIGGSNGKTTTKEMTAAVLRT-GFKVHVSRGNFNNHLGVPITLLG 162
Query: 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240
+ R +IAV+EMG++ GE+ L +ARP ++ N+G HLE L LE V A+ ++F
Sbjct: 163 MRRDTEIAVVEMGINHPGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEGVRLAERKLFD 222
Query: 241 -ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE- 298
+ +NADD +A+ R V +G + R+ +A+ + G G +V
Sbjct: 223 WLDRCRGTIFVNADDSRLADAATD-SERHVLYGTG-SPEGRICSAESVSVGHGGRVSFTL 280
Query: 299 -----KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL 353
+E+ ++F G H NA AAAAV FG+S AQV L P L
Sbjct: 281 TAGAVREQVFLQFT----GRHNVQNAVAAAAVGLHFGLSTAQVKAGLEGLLPESGWKRLE 336
Query: 354 VSRSG-IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
+S G + I+ND YNANP S R A+D L D+ C+G+R+ ++GDMLELG+T + H I
Sbjct: 337 LSEEGGVTIINDTYNANPDSMRLALDTLADMPCSGRRIAVIGDMLELGATAEDEHRSIGR 396
Query: 413 YCCDACID-------LIGLVGDRVVVQCK 434
Y ID L GL G + +C+
Sbjct: 397 YLAGLPIDMFFTFGALAGLGGRELPERCR 425
>gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
felis URRWXCal2]
gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
felis URRWXCal2]
Length = 449
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 193/377 (51%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F + G D H+++ + ++ QV N + V+ + +L
Sbjct: 34 KGDLFIVLQGNR-DGHDYVLDAIDKGAAAVIVSKQVEINDKDKIILVD-----DCFETLQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NNR+G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKILLQYDSL-VFASRGNFNNRLGLLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F+ D+ V+NAD ++ NL++ R FG +LV + L
Sbjct: 205 FENFSKNDIAVINADINCYNKIVSILKNLSINRVYN---FGISHNTPAQLVLYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + + ++ IP H A N A + + G + L+N P + R
Sbjct: 258 GEQVHLKYKINNKSLEITIPFIPRHFAENYTAILLIIDILGKDIEIAANHLANIPPNKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E++ ++ +I+ D YNA+P S +AA++ LK + K +I GDMLELG + HE+
Sbjct: 318 GEIINIQNS-RIICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEE 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVPYILDAGCSKVYLVG 392
>gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily protein [marine gamma proteobacterium
HTCC2148]
gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily protein [marine gamma proteobacterium
HTCC2148]
Length = 455
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 200/388 (51%), Gaps = 24/388 (6%)
Query: 29 INEIAESVNGKILKWGPPGIIC-----TDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++E+ E + G+I +C TD+R +A KN F A+ G++FD ++++
Sbjct: 7 LSELQEPLQGRITGED----VCFTNVFTDSRQIA--KNGLFVALVGENFDGNDYVEAVAE 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
++ + + V+ +T +L + + R+ ++G LV +TGS GK
Sbjct: 61 NGAVAALVSRSSSSALPQLCVE-------DTQTALGRLGAFNRD-LYTGPLVAITGSSGK 112
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+T K++I L G + GN+NN VGV L+L+ + + + AV+EMG + +G+I L
Sbjct: 113 TTAKNLINGVLSQRGAT-LATNGNFNNEVGVPLTLLRLSQEHEFAVVEMGAARQGDISWL 171
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ RP + V+LN +H+ES GSLE +AR KGEIF GDV V+NAD P +
Sbjct: 172 CELGRPSVAVLLNAMPAHMESFGSLETIARTKGEIFDALAAGDVAVVNADQPWAEDWKAR 231
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
G + + D +VA Q+ + G+ G V + V + PG H NA AA
Sbjct: 232 AGTATI-LDFSLNGDAAVVATQIESHGIAGSSFVAVTPKGCVDVSLRLPGEHNIANALAA 290
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AV ++L ++ L + +PV R + V+ SG +++D YNANP S AAID L
Sbjct: 291 IAVGLACELALDEIAAGLESVAPVAGRLSVQVAASGALVIDDCYNANPGSALAAIDTLA- 349
Query: 383 IACNGKRVVILGDMLELGSTERESHEKI 410
A G+ +++G MLELG E H ++
Sbjct: 350 -ASEGQGTLVMGAMLELGENSVELHRQL 376
>gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Oscillochloris trichoides DG-6]
gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Oscillochloris trichoides DG6]
Length = 493
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 136/411 (33%), Positives = 203/411 (49%), Gaps = 40/411 (9%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVG------------VIGNQ 94
G D+R + P F A+ G+ + H F+ P++ +G +G I +
Sbjct: 32 GETVIDSREVEPGT--LFVALAGERTNGHTFL-PDVIARGALGALVSRTEIEARTTILAR 88
Query: 95 VCNNWDKGFVQ-VEGNG-------------NVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
W V V G G + L +L +A Y R + + +VG+TGS
Sbjct: 89 TPRRW--ALVNPVTGAGLDSATPGVCLLIAVDDPLMALQRLAVYHRR-QLTPTVVGITGS 145
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK++TK +A AL S +S ++N+ V +L+ + A ++AVLEMGM GEI
Sbjct: 146 VGKTSTKEALA-ALLSQRFCTLKSKRSFNSEATVPTTLLQLAPAHEVAVLEMGMWAPGEI 204
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA +ARP+I +V NVG +HLE L S E + AK E+ +E VLNADDPLV +
Sbjct: 205 RFLADLARPQIGLVTNVGPTHLERLKSQEAIWYAKAELVEELPRDGWAVLNADDPLVWAM 264
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGLHLAINA 319
R F + L A QV + GL G+ + + + +++ +P G H A
Sbjct: 265 RDMTNAR--VFSYGLAPHATLWANQVESYGLDGIAMRVHYQDQVISMRLPLIGRHSIYLA 322
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA +V + G+ + L++ + Q R ++ + +++D YNA PIST AA+DL
Sbjct: 323 LAAMSVGLILGMEWPAMIAGLTDPA-AQARLRVVAGQHATTLIDDTYNAAPISTLAALDL 381
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
L A G+RV ILGDMLELGS E E H ++ DL+ VG R +
Sbjct: 382 LG--ATPGRRVAILGDMLELGSAEEEGHRQVGQRAAQVA-DLLVTVGQRAI 429
>gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Oceanobacter sp. RED65]
gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Oceanobacter sp. RED65]
Length = 452
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 193/388 (49%), Gaps = 23/388 (5%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV 104
P + TDTR L P F A+ G FD HE++ + KG V+ ++ F+
Sbjct: 24 PFQSVSTDTRTLQPG--DLFVALIGDRFDGHEYVQQAIE-KGASAVLISKRME-VTVPFL 79
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
QV +T +L + Y R RF +V +TGS GK+T K M+A L V +
Sbjct: 80 QV-----ADTTEALGRLGLYNR-LRFENPVVAITGSSGKTTVKGMMATLLRQQN-EVLVT 132
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +G L+L+ + + D AV+E+G SG GEI A +ARP + ++ N G++HLE
Sbjct: 133 RGNLNNHIGAPLTLLRLSDSDDYAVIELGASGLGEIAYTAELARPTVSILTNAGNAHLEG 192
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVA 283
GS+E + + KGEI V VLNAD P G R+V FG D+R
Sbjct: 193 FGSVEGIVKTKGEIIDALADDGVAVLNADSPYFEEWQKRAGSRRVISFGETLSADIRATD 252
Query: 284 AQV-ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
Q ANG + + E+ V+ + G H NA A AA + + L
Sbjct: 253 IQSNANGCCAFTLHINDEQSQVQLSV--MGKHNVFNALACAAACVALDMPPKLIVSGLQL 310
Query: 343 FSPVQMRSELLVSRSGI---KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLEL 399
F V+ R L+ + G+ +I++D+YNANP S RAA+D+L + + + +LGDM EL
Sbjct: 311 FEGVEGR---LLEKQGLNGSRIIDDSYNANPASVRAAVDVLA--SRSSHTIFVLGDMAEL 365
Query: 400 GSTERESHEKILSYCCDACIDLIGLVGD 427
G +H ++ +Y +A ID +G+
Sbjct: 366 GVETHLAHAEVGAYAREAGIDEFFALGE 393
>gi|418609339|ref|ZP_13172492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU065]
gi|374407741|gb|EHQ78589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus epidermidis VCU065]
Length = 451
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 199/383 (51%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
+ D+R + N+ F G++ D H FI+ L G + ++ N +G +
Sbjct: 29 VSIDSRKI--NEGALFIPFKGENVDGHRFITQAL--NDGAGAVFSEKENKHSEGNQGPII 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
VE +TL +L +A N + ++ VTGS GK+TTK MI L S V ++
Sbjct: 85 WVE-----DTLIALQQLAKAYLN-HVNPKVIAVTGSNGKTTTKDMIESVL-STEFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ +D +I++LEMGMSG +I L+ +A+P+I V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + + D+PL+ ++ + + + G
Sbjct: 198 LGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVNQVKNAKLISIGLNSDSTYTCHM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V N G+ + +KE + +P G + NA A A+ G++ + ++ N
Sbjct: 258 NDVKNEGIHF-TINQKEH----YHLPILGTYNMKNAAIAIAIGHELGLNETIIQNNIHNV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E S + + ++NDAYNA+P S +AAID L G++++IL D+LELG
Sbjct: 313 QLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLS--VMKGRKILILADVLELGPNS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ H+++ Y D ID++ G
Sbjct: 371 QLMHKQVGEYLKDKNIDVLYTFG 393
>gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate/d-alanyl-d-alanyl ligase
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Caldicellulosiruptor kronotskyensis 2002]
Length = 448
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 210/400 (52%), Gaps = 22/400 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPELY 83
+W ++EIA++VNG+ LK ++ + I + + K+ F + G FD H+F+ L
Sbjct: 3 LW-LSEIAKAVNGE-LKIFSTDVLVKNFSINSKSIGKDTLFIPLKGSRFDGHDFVKEALQ 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
G + I + ++ +V+V +TL +L ++A +AR +VGVTGSVGK
Sbjct: 61 N-GAISFISQKDFDDLKVPYVKVG-----DTLLALQSLAYFARRKLNDLKVVGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK I L SL F++ GN+NN +G+ +S++ + +AV EMGMS GEI +L
Sbjct: 115 TSTKEYIFNVL-SLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A+P+I V+ N+G +H+E+L S ++ AK EI + ++N D+ ++ NL
Sbjct: 174 SQIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDIL-NLHKK 232
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
RKV G + R Q G +V + I S H N+ A
Sbjct: 233 EFKRKVVTIGIENESNFRAQNVQKHQNGFSFEV------GGYTYFIKSFNFHDIYNSLFA 286
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AV T+ + + ++ ++ R E ++++ I +V+D YNA+ S +AID + +
Sbjct: 287 IAVGTILEIDRELIKEAILQKERLKRRFE-VINKGSITVVDDTYNASTHSMLSAIDSICE 345
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+GK++++LGDMLELG E H ++ Y ID++
Sbjct: 346 F--DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDVV 383
>gi|358053681|ref|ZP_09147417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus simiae CCM 7213]
gi|357256868|gb|EHJ07189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus simiae CCM 7213]
Length = 452
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 199/383 (51%), Gaps = 21/383 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+ D+R +A K+ F G++ D H++++ L G ++ ++ + V
Sbjct: 29 VTIDSRAIA--KDMLFIPFKGENVDGHQYVAQALNDGAGASFYQKGTELSDDVVGPIIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL +L +A Y R ++ VTGS GK+TTK MI L + V ++
Sbjct: 87 E-----DTLTALQQLAEAYLR--YVDPKVIAVTGSNGKTTTKDMIESVLHT-EFRVKKTQ 138
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ ++ +I++LEMGMSG EI L+ +A+P+I ++ N+G+SH++ L
Sbjct: 139 GNYNNEIGLPLTILDLNEDTEISILEMGMSGFHEIELLSNLAKPDIAIITNIGESHMQDL 198
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAA 284
GS E +A+AK EI K + + D+PL+ ++ + + G D+
Sbjct: 199 GSREGIAQAKAEITIGLKKNGTFIYDGDEPLLKPHVDKVANAKCISIGLNNQNDLVCHIE 258
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G+ + E+ E+ P G+H NA A AV G+S + ++ + +
Sbjct: 259 DKEMNGIAFTINNEESYEL-----PILGVHNMKNATIAIAVGKTLGLSYDVIYNNIKHVT 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR E V + I I+NDAYNA+P S +AAID L A +G+ ++IL D+LELG +
Sbjct: 314 LTGMRMEQHVLANNITIINDAYNASPTSMKAAIDTLS--ALHGRNIIILADVLELGPNSQ 371
Query: 405 ESHEKILSYCCDACIDLIGLVGD 427
H+++ Y ID++ GD
Sbjct: 372 MMHKEVGEYLKHKHIDMLFTYGD 394
>gi|414076763|ref|YP_006996081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena sp. 90]
gi|413970179|gb|AFW94268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena sp. 90]
Length = 451
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 205/384 (53%), Gaps = 33/384 (8%)
Query: 33 AESVNGKILKWGPPGI-ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91
AESVN G+ I TDTRIL P + F A+ G+ FD H+F++ + KG + I
Sbjct: 16 AESVNVSASTLTQLGMGIQTDTRILQPG--EVFLALRGEKFDGHDFVATAI-AKGAIVAI 72
Query: 92 GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIA 151
+ N ++V+ +TL + +A + R S F+ ++G+TGSVGK+TTK +I+
Sbjct: 73 VDHAYKNPGFPVLRVK-----DTLKAYQQIAKWWRES-FTIPVIGITGSVGKTTTKELIS 126
Query: 152 LALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211
L + G V ++YGN+NN +GV+ +L+ + R D AV+EM M G+G+I EL +A+P I
Sbjct: 127 AVLATKG-KVHKTYGNFNNEIGVSKTLLEMGRENDFAVIEMAMRGRGQIAELTEIAKPTI 185
Query: 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFF 271
V+ NVG +H+E LGS E +A AK E+ + +LN D+PL+ KV
Sbjct: 186 GVITNVGTAHIELLGSEEAIAEAKCELLATMPNDSIAILNHDNPLLMTTAAKFWQGKVIS 245
Query: 272 GWRRGCDVR--LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLF 329
G D++ L+ ++ E ++ +P PG H A N AA AVA +
Sbjct: 246 YGFSGGDIQGELIDSETV------------EVAGIRLPLPLPGRHNATNFLAALAVAQVL 293
Query: 330 GV--SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNG 387
+ L Q G+ ++ + RS+ + + I+++ YNA P + AA+ LL D G
Sbjct: 294 EIDWQLLQSGVMVNMPTG---RSQRFTLANDVVILDETYNAAPEAMLAALQLLAD--TPG 348
Query: 388 KR-VVILGDMLELGSTERESHEKI 410
KR + +LG M ELG E H+K+
Sbjct: 349 KRKIAVLGAMKELGERSPELHQKV 372
>gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
aggregans DSM 9485]
gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
aggregans DSM 9485]
Length = 487
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 204/388 (52%), Gaps = 33/388 (8%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-----VCNNWD- 100
G + D+R + P F A+TG+ D H ++ P++ +G + + + +W
Sbjct: 32 GPVVVDSREVTPGS--LFVALTGERTDGHLYL-PDVVERGAAAALVSPAKLAALAPDWSA 88
Query: 101 --KGFVQVE-GNGNV---------------NTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ + +E +G+ + L +L A Y R F+ ++G+TGSVG
Sbjct: 89 VARPWRLIEPSDGSALATVPPEACLFIAVDDPLCALQRAAVYHRRM-FTPTVIGITGSVG 147
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK ++A A+ S + +S ++N+ + + +L+G+ +AVLEMGM GEI
Sbjct: 148 KTSTKEVVA-AVISQRLRTLKSQRSFNSDITLPATLLGLTADHQVAVLEMGMWAAGEIRF 206
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +ARP I +V NVG SHLE LGS+E +A AK E+ + C+LNADDP VA +
Sbjct: 207 LAALARPHIGIVTNVGPSHLERLGSIEAIANAKAELPESLPPDGWCILNADDPRVAAMAK 266
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
V +G+ DVR V +++G G+++ + + E P G H A AA
Sbjct: 267 RTPAHVVTYGFAPHADVRAVEV-ISHGLYGIELTVSYQGEQHHLQTPLIGRHHAYTTLAA 325
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
A A + G+ + L + ++R ++ + G+ I++D YNA P+ST AA+++L +
Sbjct: 326 IAAALVVGLDWEAIAAGLRDPGE-RLRLRVVNGQQGVTIIDDTYNAAPLSTIAALEVLAE 384
Query: 383 IACNGKRVVILGDMLELGSTERESHEKI 410
G+R+ +LG+MLELGS E H ++
Sbjct: 385 --TPGRRIAVLGEMLELGSATEEGHRQV 410
>gi|392397284|ref|YP_006433885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flexibacter litoralis DSM 6794]
gi|390528362|gb|AFM04092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flexibacter litoralis DSM 6794]
Length = 453
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 194/382 (50%), Gaps = 18/382 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL-YGKGCVGVIGNQVCNNWDKGFVQVE 107
I TDTR + KN FFA+ G +FD ++F L G V V V +D+ Q
Sbjct: 17 ISTDTR--SVKKNDLFFALKGDNFDGNKFAYQALEKGASHVVVDDASVIPAFDEHNKQKL 74
Query: 108 GNGNV-----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
N N L SL +A + R +F+ +G+TGS GK+TTK ++ L S +
Sbjct: 75 AYKNQYLLVDNVLESLQKLANFHR-KQFTIPFIGITGSNGKTTTKELLRSVL-SQKFKTY 132
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
+ GN NN +GV L+++ + + +IA++EMG + G+I EL ++A P ++ N+G+SHL
Sbjct: 133 STEGNLNNHIGVPLTILRMPKNTEIAIIEMGANKVGDIAELCKIAEPNFGMITNIGNSHL 192
Query: 223 ESLGSLEDVARAKGEIFQES-KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281
E GS E V R K E++Q K +N+DD ++ N+ KV + G D
Sbjct: 193 EGFGSYEGVLRGKTELYQSLIKNNGTVFINSDDSVLMNMEKRFESEKVI---KYGTDPME 249
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
+A V V+ K+ + K G + N +A A FG+S +Q+ +
Sbjct: 250 NNYYLAILSESVPVITYKDEKNNKIKTQLTGAYNFPNILSALAFGKFFGLSSSQMNKGIF 309
Query: 342 NFSPVQMRSELLVSRSGIK--IVNDAYNANPISTRAAIDLLKDIACNGK-RVVILGDMLE 398
++ P RS+ + R+ K ++ DAYNANP S +AA+ L+++ NGK ++ IL DM E
Sbjct: 310 DYLPKNNRSQ-VEERTETKNTLILDAYNANPDSMKAALLHLEELPKNGKQKIAILADMFE 368
Query: 399 LGSTERESHEKILSYCCDACID 420
LG H+++L ID
Sbjct: 369 LGKESFAKHKQVLDLALQLKID 390
>gi|89099477|ref|ZP_01172353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
NRRL B-14911]
gi|89085863|gb|EAR64988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
(UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
NRRL B-14911]
Length = 457
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 201/399 (50%), Gaps = 24/399 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106
+ ++R + P F G+H D H F+ L KG + Q N + V
Sbjct: 30 VSINSRTMEPG--NLFVPFKGEHTDGHRFVEDALR-KGAAAALWQQDVPNPPLHLPILVV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL ++ ++ RN + G+TGS GK+T K M A L SL V ++ G
Sbjct: 87 E-----DTLKAVQQLSEAYRN-ELDIKVAGITGSNGKTTVKDMTARLL-SLRYKVQKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ L+L+ ++ ++AVLEMGMSG GEI L ++ARP++ ++ N+G+SHL+ LG
Sbjct: 140 NYNNHLGLPLTLLSLEEDTEVAVLEMGMSGFGEIEFLTKLARPDVVMITNIGESHLQDLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVAN----LTVPRGVRKVFFGWRRGCDVRLV 282
S +A+AK EI + K + + + D+PL+ + + P VR FG + + V
Sbjct: 200 SRAGIAKAKLEIIEGLKDDGMIIYHGDEPLLKDRLNGYSGPAKVRS--FGKGQSNSIYPV 257
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
G Q L +++ +P G+H +NA A A G+ Q+ ++
Sbjct: 258 RIDQEEKGSVFQANLSD----MEYHLPVLGVHNVMNALCAMEAAHFLGIPYEQMNEGFAS 313
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
MR EL G K++NDAYNA+P S RAAIDL+ +++ +V++L DMLELG
Sbjct: 314 LKLTAMRMELSEGCKGEKVINDAYNASPTSMRAAIDLVSELSGYSIKVLVLADMLELGDD 373
Query: 403 ERESHEKILSYCCDACIDLIGLVGD--RVVVQCKWRKWS 439
E H +I ID + G RV+ + +S
Sbjct: 374 EVRFHREIGQAIDPEKIDYVLTFGSLGRVIAEGAQEVFS 412
>gi|408377860|ref|ZP_11175459.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Agrobacterium albertimagni AOL15]
gi|407747974|gb|EKF59491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Agrobacterium albertimagni AOL15]
Length = 477
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/419 (31%), Positives = 202/419 (48%), Gaps = 25/419 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT E+ ++ G+ P G+ I D+R + P + FFAI G D H + S +
Sbjct: 4 LWTAREMVVAMGGRPFGNLPEGVTGISIDSRTITPG--EAFFAIKGDRVDGHNYASIAIA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + VE + L L + AR+ R ++ VTGS
Sbjct: 62 NGAALLVVSEAKLPALGRLTIPMIVVE-----DVLVGLQKLGMAARD-RTPATVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ LE G V S ++NN GV L+L + V E+GM+ GE+
Sbjct: 116 VGKTTTKEMLRATLEPSG-KVHASVASFNNHWGVPLTLARMPIDTRYGVFELGMNHSGEL 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+RM RP++ V+ + +HL + S++++A AK EIF+ G +LN D+P L
Sbjct: 175 GPLSRMVRPDVAVITTIAPAHLGNFASVDEIADAKAEIFEGVVNGGDAILNRDNPYYERL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+ +G+ + FG + RL A V V E V I +PG HLA
Sbjct: 235 EQAALAQGIENIHSFGQHAKAEFRLAEFDGAAELSTVWVSFGGETREV--TIGAPGRHLA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE---LLVSRSGIKIVNDAYNANPIST 373
NA A A +L G + +L+N +PV+ R E L + + +++++YNANP S
Sbjct: 293 ENAMAVLAAVSLVGADIDAAIEALANLAPVKGRGERHRLQMPDGILTLIDESYNANPASM 352
Query: 374 RAAIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
RAAI +L G+R+ +LGDMLE+G H ++ A I+ + L G +V
Sbjct: 353 RAAIAVLASAQPTSEGRRIAVLGDMLEMGEFAPSVHAELAGPLLAAGIEHVWLAGPEMV 411
>gi|373450594|ref|ZP_09542572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Wolbachia pipientis wAlbB]
gi|371932196|emb|CCE77583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Wolbachia pipientis wAlbB]
Length = 458
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 204/408 (50%), Gaps = 21/408 (5%)
Query: 27 WTINEIAESVNGK---ILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
W N I ++ G+ + I TDTR + K F A+ G+ FD H+F+ E +
Sbjct: 4 WNANNIIDATGGRGEGVCNSVYSSNISTDTRSIK--KGDLFIALKGKKFDGHDFLH-EAF 60
Query: 84 GKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGSV 141
KG V V+ N+ VQ +TL +L NMA Y RN + ++ +TGSV
Sbjct: 61 LKGAVAAVVSEDKYRNFPLIIVQ-------DTLKALHNMASYYIRNILVNAKVITITGSV 113
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L GV+ GN NN +G+ +++ +LE+GMS GEI
Sbjct: 114 GKTTTKDMLNTVLLHYGVSHVNE-GNLNNNIGLPFTILKAPEDCQYLILEIGMSRAGEIK 172
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
EL+ ++ P+I V+ N+ +H+E+ SL D+A+AK EI K VLN D+ L
Sbjct: 173 ELSEISNPDIAVITNIEPAHVENFSSLLDIAQAKLEILHGMKNNGTLVLNKDNEHYDYLL 232
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
V FG V L+ + GL +++ L +++ +P G H A +A
Sbjct: 233 SNANRNVVSFGKNESATVCLLDLIRDDNGLNLKIKL-NSGQIMNCNLPVKGEHFAYSALV 291
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG---IKIVNDAYNANPISTRAAID 378
AV + L+++ ++L NF+ + R + ++ + ++ND+YNANP S +AAI
Sbjct: 292 VTAVLQSLELDLSKLPLALENFAVTEGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIR 351
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
L + N ++V +LGDML LG+ H ++L + ++ + VG
Sbjct: 352 TLGTYS-NLRKVALLGDMLGLGNESIVFHTELLDSIVEQNVNKVHTVG 398
>gi|379010823|ref|YP_005268635.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase MurF
[Acetobacterium woodii DSM 1030]
gi|375301612|gb|AFA47746.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase MurF
[Acetobacterium woodii DSM 1030]
Length = 457
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 211/405 (52%), Gaps = 22/405 (5%)
Query: 28 TINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+I+EI + GK+++ + D+R L F I G++ + H++I+
Sbjct: 5 SIDEILQITQGKLIQGTRELFVNHVTIDSRKLEGEA--LFVPIIGENNNGHDYINQFFLN 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G +VC + ++ V EG + +TL +L +A + R+ R++ +V +TGS
Sbjct: 63 -------GGKVCLSQEQKRVIPEGMTVIAVNSTLEALKALAGFNRH-RYNIPVVAITGSS 114
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK ++A L S N ++ GN+NN G+ +L+ + +AV+EMGM G+I
Sbjct: 115 GKTTTKDLVAAVL-SQKYNTLKTEGNFNNEYGIPQTLLNLGPDHQLAVIEMGMDHLGDIS 173
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
+ ++ P+I ++ NVG SH+E L + E++ AK EI Q K + +N DD + +
Sbjct: 174 KSIQIVEPDISIITNVGLSHIERLKTQENIYLAKKEILQTLKNDGIAYVNGDDHFLKKIQ 233
Query: 262 VPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+V FG V+ + ++ GL +QV E E+ F PG H N
Sbjct: 234 SETNNYQVRTFGIEGQHTVKAIDYHSSHNGLEIQVGWENRNELYTF--NYPGKHNVYNCL 291
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
A + +G++ A++ L+ F P R ++ ++ + +K++ND+YNANP + RA+ID++
Sbjct: 292 VAIGLGYFYGMTQAEIQAGLNAFVPSGNRMDIFITGT-VKVINDSYNANPDAMRASIDVM 350
Query: 381 KDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGL 424
+ + +R + ILGDMLE+G +H +I +Y LIG+
Sbjct: 351 EVLGHEYQRKIAILGDMLEMGEYGPPAHYEIGNYASGKVDVLIGV 395
>gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Melissococcus plutonius ATCC 35311]
gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Melissococcus plutonius ATCC 35311]
Length = 461
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 209/407 (51%), Gaps = 18/407 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
W I ++ ++ N +W I I D+R LA F G D H+FI +
Sbjct: 5 FWEIADVVQATNN-WKQWSDFTINTIEFDSRQLASGS---LFIPLGGKTDGHQFIM-DAR 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+G + ++ + +GF +E V+TL ++ ++A Y + + ++ VTGS GK
Sbjct: 60 SQGAKAALWSKESSLAPEGFPILEV---VDTLKAIQDLAMYYL-KKLAPQVIAVTGSNGK 115
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA L + +++ GN+NN++G+ +++ + ++ VLEMGM EI L
Sbjct: 116 TTTKDMIAAVLAKKYI-TYKTQGNYNNQIGLPYTILHMPEETEMLVLEMGMDHADEIDFL 174
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++A P + + +G++H+E+LGS +++A+AK I + + ++ ++PL+ LT
Sbjct: 175 SQLASPTVAAITMIGEAHIENLGSRQEIAKAKMGITKGLVEDGLLIIPENEPLLKPLTAN 234
Query: 264 RGVRKVFFGWRRGCD-VRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
FG+ D V V + N + + + F IP PG + NAC A
Sbjct: 235 STQTIKTFGFTNEADFVECVQLEEKN-----KTTFKLSGYQLPFTIPVPGKYNVDNACIA 289
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
+ F V ++ +L+ + R+E + + +G++I++D YNANP + +D
Sbjct: 290 LIIGKWFQVPEKEMQQTLAEVHLTKNRTEWVTANNGVEILSDVYNANPTAVSLVLDSFGQ 349
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+ NG+R+V+LGDMLELG+T + H+++ + A I + L G +
Sbjct: 350 MFTNGRRIVVLGDMLELGATSKMMHQQLSKHLFPAIIQEVFLYGTEM 396
>gi|423072779|ref|ZP_17061528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium hafniense DP7]
gi|361856394|gb|EHL08297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium hafniense DP7]
Length = 453
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/402 (30%), Positives = 207/402 (51%), Gaps = 15/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ EI + GK+L P ++ TD+R + F + G+ DAH F+
Sbjct: 4 TVREIVAACGGKLLCGDPDTMVTSVVTDSRKV--TDGSLFVPLKGEKADAHTFLHAAFAS 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ + ++ ++ V+ +T +L +A R RFS +VG+TGS GK+
Sbjct: 62 GAAAALTQEHMRMEAEEAWIAVD-----STQLALQQIAAAYRQ-RFSIPVVGITGSAGKT 115
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M ALAL S G V ++ GN N+++G+ L + + AV+EMG+S GE+ LA
Sbjct: 116 TTKEMTALAL-SAGYKVMKTGGNHNSQIGLPLMMFQFSWEHEAAVVEMGISDFGEMARLA 174
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++A P+ V+ N+G +H+ L + ++ R K I G V LN DDP++A L
Sbjct: 175 QVAEPKYAVMTNLGITHIGQLKTQGNILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT 234
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
G VF+G CD R V G L E V+ +P G+H ++A AA A
Sbjct: 235 GYETVFYGTAPWCDFRAEGITV-QGETTAFRCLAPGSESVEVALPVLGMHHVLDALAALA 293
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
VA GV L + +L ++ P+ MR ++ + + +++D+YN++P + ++++ +L
Sbjct: 294 VAERLGVPLKRAAAALRDYRPLAMRQQIY-HVNEVAVIDDSYNSSPGAAKSSLSVLAGFR 352
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+RV +L DMLELG R++H ++ + +D++ VG
Sbjct: 353 A-GRRVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLTVG 393
>gi|406879873|gb|EKD28357.1| hypothetical protein ACD_79C00332G0011 [uncultured bacterium]
Length = 467
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 216/412 (52%), Gaps = 25/412 (6%)
Query: 29 INEIAESVNGKILK-WGPPGIICTDTRILAPN--KNQWFFAITGQHFDAHEFISPEL--- 82
I EI E++ ++++ G + I + N ++ I G + D H++I+ L
Sbjct: 5 IKEIKEALGSELIEIHGEDNFVLNKVSIDSRNISNGDFYCPILGSNHDGHDYINDSLAKG 64
Query: 83 -----YGKGCVGVIGNQVCNNWDKGF-VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
Y K G N++ N K F VQV+ +TL +L ++ Y R +F+ ++
Sbjct: 65 AKGFFYSKEISGETFNRIKTN--KNFAVQVK-----DTLRALQWLSGYVR-RKFNPKVIA 116
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
+TGS GK+TTK M+ L V S ++NN +GV L+L+ ++ + V+EMGM+
Sbjct: 117 ITGSNGKTTTKEMLGSVLSKSHKTVI-SKKSFNNHIGVPLTLLEMNEHTEFVVVEMGMNH 175
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD-DP 255
GEI EL ++A+P+I ++LN+ +H+ + + E++ AK E+ ++ K + +LN++
Sbjct: 176 IGEIHELMQIAKPDIGIILNISCAHIGNFKNFEELVEAKSEMGKDLKKDGLLLLNSNLKG 235
Query: 256 LVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
+ + RG R FG + R A + G+ V ++++ + + P G H
Sbjct: 236 IFKHYNDLRG-RIYEFGSDKSAYCRYEAFAQNSKGVEVNIIIDGVNTKISY--PGLGTHN 292
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
A N A A A+ +SL + +S+ MR EL V + G+KI+NDAYNANP S A
Sbjct: 293 AENIAAVCACASFLKISLKDIESGISSMKTPSMRMELKVLKDGLKIINDAYNANPSSFSA 352
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
AI I CNG++++++G+M ELG ++ HE++ + +D + +G+
Sbjct: 353 AIKTFDLIPCNGRKIMVVGEMKELGGLSKKYHEELAHEIDSSSVDEVYGIGE 404
>gi|163815495|ref|ZP_02206868.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
gi|158449132|gb|EDP26127.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Coprococcus eutactus ATCC 27759]
Length = 495
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 199/403 (49%), Gaps = 14/403 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQ--WFFAITGQHFDAHEFISPELYGK 85
T+ I E+ G +L G + TD I + + F I G D H FI L
Sbjct: 45 TVKNILEATGG-VLLCGDENTVLTDICINSKEAKEGDLFVPIIGSRTDGHRFIESALQVA 103
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
+ DK +++V+ +T+ +L + Y RN R+ +V VTGSVGK+T
Sbjct: 104 AATLTSEHDNVVVSDKAYIRVD-----DTVKALQAIGKYIRN-RYDMPVVAVTGSVGKTT 157
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
T+ MI A+ S G+ F + GN+N+ G +++ + D AVLE+G+ GE+ L
Sbjct: 158 TREMITAAV-SAGMKCFHTEGNYNSVYGEPITVSRMTDEYDAAVLELGIGEPGEMDILTD 216
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+A+P+I VV +G +H+E +GSLE+ + K I + +N DDP++ +
Sbjct: 217 IAQPDICVVTTIGVAHIEYMGSLENTRKEKLSIIKGMGKNGTLYINGDDPMLYAVKDEIP 276
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
+ +G G D R ++ +G +V + VK + GLH N+ A AV
Sbjct: 277 CKVYTYGCGEGMDFRATNIRMEDGYSIYDMVHGDDVVTVKVGV--MGLHNVRNSLVAMAV 334
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
+ GV + + NF +R +++ I++D YNA+P S +A+ D+L D+ C
Sbjct: 335 SHQLGVPYEKSSKAFENFR--GLRQKVIKLPGKYTIIDDTYNASPDSMKASTDVLCDMKC 392
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
G++ ++LGDMLELG E H ++ Y D ID + ++G+
Sbjct: 393 EGRKYIVLGDMLELGDRSDEYHREVGEYLRDKKIDEVIVIGEH 435
>gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 466
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/407 (31%), Positives = 214/407 (52%), Gaps = 22/407 (5%)
Query: 28 TINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ E+A + G+++ + I D+R + +K+ F I G++ DAH+F+ +Y
Sbjct: 12 TVKELAAATGGELISGNENEVFSNIVIDSRQV--DKDSLFVPIVGENNDAHKFLEA-VYN 68
Query: 85 KGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
GC I ++ K F V V+ +T +L ++ Y R + + LVGVTGSVG
Sbjct: 69 SGCKVAISSKKDIFLKKDFNIVLVD-----DTTKALQSLGKYIR-KKLNLPLVGVTGSVG 122
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TT+ M+ALAL L VF++ N+N++VGV ++L I + +I V+E+GMS E+ +
Sbjct: 123 KTTTREMVALALSDL--KVFKTPNNFNSQVGVPITLSRI-KDEEIGVIELGMSKFDEMEK 179
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
+A++ + +V N+G +H+E+L + E++ K I K V LNAD+ L+ N
Sbjct: 180 IAKIVNCDCALVTNIGTAHIENLFTRENIRTEKFHIMDGMKENSVVFLNADNDLLNNSPK 239
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
G+ FF + D A+ + + E + ++ + G H NA AA
Sbjct: 240 REGIIYKFFSAKGNKDCEYYASDIVFNNAMPEFNAHIEGKTLRVHLNVFGEHQISNALAA 299
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AVA + +S+ L +F R EL++ R G+ +++D YNA+P S +A+I +LK
Sbjct: 300 LAVADHYNLSIESAAKHLEDFRGFSHRQELII-RGGLTVIDDTYNASPDSMKASISILK- 357
Query: 383 IACNGKR-VVILGDMLELGSTERESHEKILSYCC-DACIDLIGLVGD 427
N KR + IL DM ELG E+ H +I + + +D + VG+
Sbjct: 358 -GFNAKRKIAILADMKELGEDEKNLHREIGDFINKNVKVDAVFTVGE 403
>gi|410460851|ref|ZP_11314519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
azotoformans LMG 9581]
gi|409926493|gb|EKN63659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
azotoformans LMG 9581]
Length = 453
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 193/382 (50%), Gaps = 25/382 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGV------IGNQVCNNWDKG 102
I TD+R NK F I G FD H+FI + G+ + + N++
Sbjct: 28 ITTDSRKKV-NKG-LFVPIVGDQFDGHDFIRDAINNGAIAGLWQEHKEVPTFIPNDFPLF 85
Query: 103 FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
FV+ +T+ L +A + + V++G+TGS GK+TTK ++ L+
Sbjct: 86 FVK-------DTIEGLQKLAKFYL-QKIKPVVIGITGSNGKTTTKDLVYSVLQK-KYKTH 136
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ GN+NN +G+ L+++ ++ +LEMGMS GEI L+ ++ P+ ++ N+G+SH+
Sbjct: 137 KTQGNFNNHIGLPLTILSSPENTEVIILEMGMSNFGEISLLSELSNPDYAIITNIGESHI 196
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLV 282
E LGS +A+AK EI K +++ D+PL++ ++ +G+ + G+ G D+ +
Sbjct: 197 EFLGSRAGIAKAKLEITGGMKPNGKIIVDGDEPLLS--SIEKGLSVIRCGFNTGNDLLIS 254
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ + L E + F + G H NA A A+A V + + L
Sbjct: 255 NVKFEDDH---HCFLVNENQ---FELSLLGRHNVKNASYAIALAMELAVPMEDIKEGLEK 308
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
MR E ++ ++G I+NDAYN++P S +AAID +KD ++V++LGDM ELG
Sbjct: 309 IEVTGMRLERMIGKNGALIINDAYNSSPTSMKAAIDTVKDYHQYDRKVLVLGDMYELGPN 368
Query: 403 ERESHEKILSYCCDACIDLIGL 424
E E H + D+I +
Sbjct: 369 EEELHRSVADVINKPITDVIAI 390
>gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Phascolarctobacterium succinatutens YIT 12067]
gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Phascolarctobacterium succinatutens YIT 12067]
Length = 454
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 193/381 (50%), Gaps = 18/381 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV--QV 106
+ TD+R + P + F A+ G +FD H++ + + G GV+ + + G V
Sbjct: 23 VTTDSRAVKPG--ELFVALKGDNFDGHDYCAKAVE-LGAAGVVVSHEVSGLPAGVAVFMV 79
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLV-GVTGSVGKSTTKSMIALALESLGVNVFQSY 165
E +TL + +A +A R G+ V +TGS GK++TK ++A L S NV ++
Sbjct: 80 E-----DTLLAYQQLA-HAYRLRKQGLKVFAITGSNGKTSTKDLLAACL-SCKYNVVKTQ 132
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ +L+ I DIAV+EMGM G G+I EL R+A P+ ++ NVG++H+E L
Sbjct: 133 GNFNNEIGLPKTLLSIKPDTDIAVVEMGMRGLGQIAELCRIAEPDSGLITNVGETHMELL 192
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
GS+E++ +AK EI VLN D+ V + V+FG CD R
Sbjct: 193 GSMENIGKAKSEIVLNLPEDGFAVLNGDNEYVLPAADKTKAKVVYFGLGENCDFRGSDIV 252
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
+ G + E V + G H NA +A A A +GV +A +L+
Sbjct: 253 TSGAGTTFTCTHKATGEAVNVSLQLIGEHNVYNALSAIAGAFCYGVPMAVSAQALATARL 312
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI--ACNGK--RVVILGDMLELGS 401
R E +V I +NDAYNA+P S AA+ L + A +GK + +L DMLELG
Sbjct: 313 TGSRQE-IVYIGDITFINDAYNASPASMEAALKTLAEAKKAAHGKARTIAVLADMLELGD 371
Query: 402 TERESHEKILSYCCDACIDLI 422
++H ++ + + +D +
Sbjct: 372 ISEDAHRRVGRWAVENGVDFV 392
>gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 456
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 201/385 (52%), Gaps = 20/385 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDK---GFVQ 105
+ TD+R +A + F A+ G++FD H++++ ++ VQ
Sbjct: 24 VSTDSRSIAAG--ELFVALRGENFDGHDYVAAAKARGAAAAIVATDAAEGLQALSLPLVQ 81
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALES-LGVNVFQS 164
V T SL +A R RF+ L+ VTGS GK+TTK MIA L++ G V +
Sbjct: 82 V-----AETRLSLGALAADWRG-RFALPLLAVTGSNGKTTTKEMIASILKAAYGEAVLAT 135
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+L+ ++ A++E+GM+ GEI LA +ARP + +V N +HL
Sbjct: 136 QGNFNNDIGLPLTLLRLNATHRAAIIELGMNHPGEIAYLAGIARPTVALVTNAQRAHLAG 195
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLV 282
+GSLE +A KG I+ V V NADDP A L + RG+R + FG+ + D V
Sbjct: 196 MGSLEAIAAEKGSIYTGLDETGVAVFNADDPW-AKLWRSQCRGLRMMTFGFEQAAD---V 251
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ GL ++ L V+ PG H A NA AAA A G+SL V LS
Sbjct: 252 TGKFHLHGLESRLSLFAPDGQADVVLALPGQHNARNALAAATAALAAGISLTAVQAGLSA 311
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F ++ R + + G +++D YNANP S RA ID+L A GK++++LGDM E+G
Sbjct: 312 FRGLKGRLQRRTALHGAVLLDDTYNANPDSVRAGIDVLA--ATIGKKILVLGDMGEIGEM 369
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
+ H++I Y IDL+ +G+
Sbjct: 370 SAQFHDEIGGYAKSQGIDLLLALGE 394
>gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 460
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 173/315 (54%), Gaps = 6/315 (1%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL +L +A + R + ++G+TGS GK+T K +I L S V ++ GN+N+++
Sbjct: 93 DTLFALQQLAQFYRRE-INVKVIGITGSNGKTTVKDIIEGILRST-YRVHKTKGNFNSQI 150
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ L+++ + R + +LEMGMS KG+I L+R+A+P++ V+ +G SHLE+LGS +++A
Sbjct: 151 GLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIA 210
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
+AK EI + + + N D+PL++ V FG + D+ Q+ G+
Sbjct: 211 KAKLEIIDGLRENGLFLYNGDEPLLSRNNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVH 270
Query: 293 VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
++ K +++ +P G H N AV V ++ +L + QMR +
Sbjct: 271 FKLNHTK----IQYDVPLHGKHNIFNTIVGIAVGQFSKVPTEKIQEALQQINITQMRFQF 326
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
L ++ G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG H +I
Sbjct: 327 LTAKIGFTIINDAWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGK 386
Query: 413 YCCDACIDLIGLVGD 427
+ I + G+
Sbjct: 387 MLNEENIQYVFTYGE 401
>gi|392307111|ref|ZP_10269645.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas citrea NCIMB
1889]
Length = 463
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 190/384 (49%), Gaps = 21/384 (5%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G I TDTR + N+ F A+ G +FD H+F+ + KG + I + FV
Sbjct: 25 GNINTDTRTI--TTNEVFLALKGPNFDGHKFVQ-QAQEKGAIAAIVESKVDCDIPQFVVE 81
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ + + + MA A + + +TGSVGK+T K M A L G +V + G
Sbjct: 82 DTRLALGAIGKAI-MAQVAPKT------IAITGSVGKTTVKEMCAAVLARRG-HVLATNG 133
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV L+L+ ++ + AV+E+G + GEI A + +P++ VV NV +H+E G
Sbjct: 134 NFNNDIGVPLTLMRLEAQHEYAVIELGANHIGEIAYTAALTQPDVAVVCNVAPAHIEGFG 193
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR-KVFFGWRRGCDV---RLV 282
S+E V +AKGEIF K V V+N D G + +V F D+ +V
Sbjct: 194 SIEGVGQAKGEIFSGLKASGVAVINCDSEFAGMWQSGLGDKSQVRFSLTEKLDIWVENVV 253
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+A ++ E ER V +P PG H +N AA+ T G SL V +S
Sbjct: 254 LDHMAYASF--ELCTENER--VSVTLPLPGEHNVMNTLICAALTTQLGASLQDVAEGVSQ 309
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
+ + R L+ + +V+D YNAN S +AAIDLL + G + LGDM ELG
Sbjct: 310 MNAPKGRVNLIKVHDSLTVVDDTYNANVRSVKAAIDLLTQMP--GHHIFALGDMGELGEQ 367
Query: 403 ERESHEKILSYCCDACIDLIGLVG 426
RE HE++ Y + ID + +G
Sbjct: 368 AREYHEEVGEYAREKGIDELFTLG 391
>gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Pasteurella dagmatis ATCC 43325]
gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Pasteurella dagmatis ATCC 43325]
Length = 461
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/397 (30%), Positives = 206/397 (51%), Gaps = 16/397 (4%)
Query: 31 EIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
++AE +N K++ G + I TDTR + N FFA+ G++FDAH ++ + +G V
Sbjct: 8 KLAEILNAKLVGNGLVEVENISTDTRKMVVNS--LFFALKGENFDAHHYLDKAV-AQGAV 64
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
++ ++ ++ D + VE +T +L +A + R + + ++V +TGS GK+T K
Sbjct: 65 ALVVQKINSHLDVPQLVVE-----DTKIALGELAKWVRET-VNPLVVAMTGSSGKTTVKE 118
Query: 149 MIALALESLGVN---VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
M A L+ VN V + GN+NN +GV L+L+ + AV+E+G + +GEI
Sbjct: 119 MTASILQKSAVNSDTVLFTEGNFNNDIGVPLTLLRLTPEHQFAVIELGANHQGEIAYTTS 178
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+A+P++ +V NV +HLE GS+E VA+AKGEI++ V ++N + G
Sbjct: 179 LAKPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYRGLPASGVAIINKEHNYSIKWAQEIG 238
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
R + + + A V G + L + + +P G H NA AA A+
Sbjct: 239 ERAIQYFAYQDATADFYADNVQFNESGSEFELHTPQGQIHISLPYLGEHNVKNALAATAL 298
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
A G SL QV L S V+ R + + +++D YNAN S ++AI +L+ +
Sbjct: 299 AMNVGASLTQVKKGLEMRSQVKGRLFPIQPCENLLLLDDTYNANVDSLQSAISVLQKYSA 358
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
R++I+GDM ELG + H+++ Y A +DL+
Sbjct: 359 --FRILIVGDMAELGENSQLCHQQVADYAKSADLDLV 393
>gi|354565825|ref|ZP_08984999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Fischerella
sp. JSC-11]
gi|353548698|gb|EHC18143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Fischerella
sp. JSC-11]
Length = 452
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 197/364 (54%), Gaps = 26/364 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTRIL P + F A+ G+ FD HEF+ P KG + I + N +QV+
Sbjct: 33 IQTDTRILKPG--EVFLALRGEKFDGHEFV-PMAIAKGALAAIVDFAYPNPQFPVLQVK- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R+ RF ++GVTGSVGK+TTK +IA L + G V +++ N+
Sbjct: 89 ----DTLQAYQKIGRWWRD-RFEIPVIGVTGSVGKTTTKELIAAVLATQG-KVHKTHANF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ ++ D AV+EM M GKG+I EL ++ARP I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELNAEHDFAVVEMAMRGKGQIAELTQIARPTIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVA 287
+A AK E+ + V +LN D+PL+ KV FG+ G D++ +
Sbjct: 203 AAIAAAKCELLAQMPKDSVAILNYDNPLLIETAAKVWSGKVITFGF-TGGDIQ--GELID 259
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
N L V ++ +P PG H+A N AA AVA + + + + ++ P
Sbjct: 260 NNTLAV--------ADMQLPLPMPGRHIAANYMAALAVAQVLDIDWSCLKSGVTVDMPTG 311
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTERES 406
RS+ + + I+++ YNA P + AA++LL GKR + +LG M ELG R+
Sbjct: 312 -RSQRFALPNDVVILDETYNAAPEAMLAALNLLAQ--TPGKRHIAVLGAMKELGERSRQL 368
Query: 407 HEKI 410
H+++
Sbjct: 369 HQRV 372
>gi|219667709|ref|YP_002458144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfitobacterium hafniense DCB-2]
gi|219537969|gb|ACL19708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Desulfitobacterium hafniense DCB-2]
Length = 453
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 207/402 (51%), Gaps = 15/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
T+ EI + GK+L P ++ TD+R + F + G+ DAH F+
Sbjct: 4 TVREIVAACGGKLLCGDPDTMVTSVVTDSRKV--TDGSLFVPLKGEKADAHTFLHAAFAS 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ + ++ ++ V+ +T +L +A R RFS +VG+TGS GK+
Sbjct: 62 GAAAALTQEHMRMEAEEAWIAVD-----STQLALQQIAAAYRQ-RFSIPVVGITGSAGKT 115
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M ALAL S G V ++ GN N+++G+ L + + AV+EMG+S GE+ LA
Sbjct: 116 TTKEMTALAL-SAGYKVMKTGGNHNSQIGLPLMMFQFSWEHEAAVVEMGISDFGEMARLA 174
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++A P+ V+ N+G +H+ L + ++ R K I G V LN DDP++A L
Sbjct: 175 QVAEPKYAVMTNLGITHIGQLKTQGNILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT 234
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
G VF+G CD R V + L E V+ +P G+H ++A AA A
Sbjct: 235 GYETVFYGRLPWCDFRAEGITVQEETTAFR-CLAPGSESVEVTLPVLGMHHVLDALAALA 293
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
VA GV L + +L ++ P+ MR ++ + + +++D+YN++P + ++++ +L
Sbjct: 294 VAERLGVPLKRAAAALRDYRPLAMRQQIY-HVNEVAVIDDSYNSSPGAAKSSLSVLAGFR 352
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+RV +L DMLELG R++H ++ + +D++ VG
Sbjct: 353 A-GRRVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLTVG 393
>gi|340758430|ref|ZP_08695017.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
ATCC 27725]
gi|340577587|gb|EES65321.2| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
ATCC 27725]
Length = 428
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 202/398 (50%), Gaps = 29/398 (7%)
Query: 40 ILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNW 99
+++ G + D+R K FFAI + + +I L KG V+ + N
Sbjct: 17 VVETNEIGHVVMDSR--KVQKGDLFFAIN----NGNNYIEDVL-NKGAALVVADNYKGN- 68
Query: 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
DK ++VE NT+ S+ +A R + ++ +TGS GK+TTK M+ L V
Sbjct: 69 DKRVIKVE-----NTVESMQKLAQKYREA-LDIKIIAITGSNGKTTTKDMMYSVLSQKYV 122
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
++ GN NN +GV +++ +D ++AVLE+GMSG GEI L+ +A+P+I V+ N+GD
Sbjct: 123 TA-KTMGNLNNHIGVPFTILQLDSKYEVAVLELGMSGFGEIDLLSNIAKPDIGVITNIGD 181
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
SHLE L + E+V +AK E+ + ++ + DDP L + G++ G+ +
Sbjct: 182 SHLEFLKTRENVFKAKTELIKYITKENLIIF-GDDPF---LKILDGIK---VGYGDNNNY 234
Query: 280 RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGIS 339
++ ++ GL ++ + K+ + G H +NA A + G+ ++
Sbjct: 235 QIKNFMDSDKGLSFEL------DENKYEVALNGKHNCLNAAMAVVIGKKMGIPYEEIKAG 288
Query: 340 LSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLEL 399
L N MR + + + I +NDAYNA+PIS +++ + + ++V+LGDMLEL
Sbjct: 289 LKNLELTPMRFQ-KIEKENIVYINDAYNASPISVSFSLETFDKLYNDTLKIVVLGDMLEL 347
Query: 400 GSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKWRK 437
G E E H+ IL + D I L G+R+ ++ K
Sbjct: 348 GENEIEYHKNILDKALNIHTDKIYLYGERMRKALEYIK 385
>gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 553
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 203/409 (49%), Gaps = 41/409 (10%)
Query: 51 TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGF--VQVE 107
TD+R + + + FFA+ G++FD H F+ + V+ + C W + VE
Sbjct: 39 TDSRTI--KRCEAFFALKGENFDGHAFVERAVRAGAVALVVSDLKCAELWQAELPTILVE 96
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE-SLGVNVFQSYG 166
+TL +L +A Y R + + LV +TGSVGK++T+ MIA AL +L V+ +
Sbjct: 97 -----DTLTALQKLAAYYRQN-YLHTLVAITGSVGKTSTREMIAAALRPTLAVSC--TGE 148
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV +++ + A D+AV+EMGM G++ +L+R+A+P+I V+ N+G H+E LG
Sbjct: 149 NLNNEIGVPQTVLKVRSACDVAVVEMGMDHAGDLTKLSRLAQPDIAVITNIGYCHIEQLG 208
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR--GVRKVFFGWRR--------- 275
S + RAK EI K V +LNADDP + L + +++ F
Sbjct: 209 SQMAIMRAKAEIINGLKADGVLLLNADDPFLRQLAAEQKGKIKQAFVALNTCPPDLPGDC 268
Query: 276 --GCDVRLVAAQVANGGLGVQVV--LEKEREMVKFV---------IPSPGLHLAINACAA 322
DV++ A+ + +Q LEK M FV +P PG H INA
Sbjct: 269 LVATDVKIEVDGCASFIIKLQQAPDLEKYGTMEAFVDSNRLPRIKLPVPGEHHVINALFG 328
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
A A L L L +FS + R ++ + G+ ++ND YNA P S RA + L
Sbjct: 329 LATAHLLHQPLTLAANGLRDFSVIGNRQRIM-NADGVVLINDTYNAAPESIRAGVKTLCF 387
Query: 383 IACNGKR--VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+A + KR + +LG + ELG+ H ++ Y A + I L G V
Sbjct: 388 LAHSEKRRAIAVLGGIAELGNMADRLHYELGRYLATADLAEIWLCGPYV 436
>gi|418401179|ref|ZP_12974711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti CCNWSX0020]
gi|359504836|gb|EHK77366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sinorhizobium meliloti CCNWSX0020]
Length = 477
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 136/415 (32%), Positives = 207/415 (49%), Gaps = 25/415 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GI I D+R + + FFAI G D H++ L
Sbjct: 4 LWTSSDLLAAMNGRPVGNLPEGITGISIDSRTI--GDGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + V+ + L +++ + C AR+ R + ++ VTGS
Sbjct: 62 NGAALLVVSEAKLPALGRLIAPMIVVD-----DVLEAMIRLGCAARD-RSAAKIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L LG V S ++NN GV L+L + D V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPLG-RVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L L RM RP + VV ++ +HL + SL+++A AK EIF+ G V+N D L+
Sbjct: 175 LPLTRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
GV V FG + RL A+ A G G + ++ I PG H+A
Sbjct: 235 ERAAAAAGVSHVHSFGANPRSEFRL--AEFAGGAEGSVLWAGIGGRTLEIAIGVPGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA AA A ATL G +V S + P + +R L + + +++++YNANP S
Sbjct: 293 ENALAAIAAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASM 352
Query: 374 RAAIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
RAAI LL+D A G+R+ +LGDMLE+G H + +A I + L G
Sbjct: 353 RAAISLLRDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALARPVVEAGIADVWLAG 407
>gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Cylindrospermopsis raciborskii CS-505]
gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Cylindrospermopsis raciborskii CS-505]
Length = 451
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 201/366 (54%), Gaps = 30/366 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR+L P + F A+ G+ FD H+F+ + +G V I + N D ++V
Sbjct: 33 IQTDTRVLQPG--EIFLALGGEKFDGHQFVEMAIT-RGAVAAIVDYTYNYPDLPVIKVS- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTLN+ +A + R +F ++GVTGSVGK+TTK +IA L + G V +++GN+
Sbjct: 89 ----NTLNAYQELAKWWRG-QFGIPVIGVTGSVGKTTTKELIAAVLGTRG-KVHKTHGNF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + + D AV+EM M G+G+I EL +A+P I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELSQGDDFAVIEMAMRGRGQIAELTHIAKPNIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ +A AK E+ E V VLN D+PL+ ++V+ G +++ +
Sbjct: 203 QAIAEAKCELLAEMPNDSVAVLNYDNPLLMATA-----KQVWSG-------EVISYGFSG 250
Query: 289 GGLGVQVVLEKEREMVKFVIPSP--GLHLAINACAAAAVATLFGV--SLAQVGISLSNFS 344
G + ++V ++ E+ +P P G+H N AA AVA + GV L + GI N +
Sbjct: 251 GDIQGKLVDYQKVEVGGMTLPLPLAGVHNGSNFLAALAVAKVLGVDWKLLEAGI---NVT 307
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
Q RS+ I I+++ YNA P + AA++LL +++ +LG M ELG
Sbjct: 308 MPQGRSQSWKLPRDIMILDETYNAAPEAMLAALELLAQTPGR-RKIAVLGAMKELGERST 366
Query: 405 ESHEKI 410
+ H+++
Sbjct: 367 KLHQQV 372
>gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
chlorochromatii CaD3]
gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chlorobium chlorochromatii CaD3]
Length = 476
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 194/387 (50%), Gaps = 27/387 (6%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNW-----------DKGFVQVEGNGNV 112
F A+ G+ D H +++ +++ G + N+ +W KGF+ VE
Sbjct: 46 FVALHGERTDGHRYVN-DVFQHGATWAMVNR---SWYEAEGHPLPPHHKGFLVVE----- 96
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+T+ L ++A RN+ FS +V + GS GK+TTK M+A L S V S GN NN +
Sbjct: 97 DTVAGLQHLAVRYRNT-FSIPIVAIGGSNGKTTTKEMVAAVLASDSSAVSMSQGNRNNHL 155
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
GV L+L+ + + + AV+E+G++ E+ LA + P ++ N+G HLE LG L+ VA
Sbjct: 156 GVPLTLLQMRHSTERAVVEVGINHPNEMAMLAELVAPTHLLLTNIGHEHLEFLGDLDGVA 215
Query: 233 RAKGEIFQESKL-GDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA---N 288
+A+ +++ ++ G +NADD + R + + D + A V +
Sbjct: 216 KAETQLYDYARQHGATAFINADDERLRAAAEGMPFR-IDYSLHEAVDSLVWAEDVTVERD 274
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G L +V + E + + G H +NA AAA V FG+SL + L+ P
Sbjct: 275 GRLSFLLVTKGRSEQERLRLHFTGRHNVLNAVAAATVGLQFGISLHHICEGLAGLQPAPG 334
Query: 349 RSEL-LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
L +V G++++ND YNAN S R AID L D+ CNG+R+ ++GDMLELG H
Sbjct: 335 WKRLEVVEVGGVRLLNDTYNANSDSMRRAIDALCDMPCNGRRIAVVGDMLELGDAAEVEH 394
Query: 408 EKILSYCCDACIDLIGLVGDRVVVQCK 434
+ + Y + + + G + C+
Sbjct: 395 QAVAHYIQRSLVTKLFTFGTQAAAICR 421
>gi|213964055|ref|ZP_03392297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sputigena Capno]
gi|213953281|gb|EEB64621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sputigena Capno]
Length = 443
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/407 (31%), Positives = 202/407 (49%), Gaps = 31/407 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR +A K +FA+ G F+ + F + E KG + ++V + V
Sbjct: 14 VSTDTRNIA--KGSIYFALKGASFNGNTF-AAEALEKGAQYAVIDEVAYQTSDKMILVS- 69
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y RN+ +++G+TGS GK+TTK +I L S +NV + GN
Sbjct: 70 ----DVLTTLQELATYHRNT-LKTLVIGITGSNGKTTTKELIKSVL-SQQLNVVATQGNL 123
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A+P+ + ++G +HLE GS
Sbjct: 124 NNNIGVPLTLLSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYITSIGKAHLEGFGSF 183
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVFFGWRRGCDVRL------ 281
E V + KGE++ K ++ NAD+P+ L FG +G +V +
Sbjct: 184 EGVIQTKGELYDYLKAHQKTIIANADNPITEALLADYD-NDYSFGVGKGVNVAVQCVGTQ 242
Query: 282 -VAAQVANGGLGVQVVLEKEREMVKFVIPSPGL---HLA-----INACAAAAVATLFGVS 332
V Q + Q E ER +++ +P + HL N AA A F +S
Sbjct: 243 PVTIQFEDA--STQTTEEGERVLIEGFTDAPTVATSHLVGSYNFTNIAAAVAFGKFFKLS 300
Query: 333 LAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVI 392
+ + + P RS+L+ S ++ DAYNANP S AAID L ++ K+V+I
Sbjct: 301 NEAIKRGIEAYIPQNNRSQLMQWGSNTVLL-DAYNANPSSMAAAIDNLLTMSDEKKKVLI 359
Query: 393 LGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV-VQCKWRKW 438
LGDM ELG+ E H++I+ + + + LVG Q + ++
Sbjct: 360 LGDMFELGNYAAEEHQRIVDKLKNYEWEGVYLVGSNFAKTQSPYPQY 406
>gi|345860031|ref|ZP_08812360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Desulfosporosinus sp. OT]
gi|344326892|gb|EGW38341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Desulfosporosinus sp. OT]
Length = 474
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 197/392 (50%), Gaps = 13/392 (3%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
WT+ +A+ G ++ G I D+R + FFA+ G+ D H++I +
Sbjct: 4 WTVEAVAQIAQGTLIGNSDLEVQGCII-DSR--QAQGGEMFFALPGEQVDGHDYIEAA-W 59
Query: 84 GKGCVGVIGNQV-CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFS-GV-LVGVTGS 140
G V V+ ++ K EG + + + + A+ R GV +VGVTGS
Sbjct: 60 KNGAVLVVADEARFQRSGKTPRTPEGKALLLVKSVFIALQELAKAWRLELGVKVVGVTGS 119
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S V+++ N NN +G+ L+++ +I VLEMGM G GEI
Sbjct: 120 NGKTTTKDMIAAVL-SRRFRVYRNKENHNNELGLPLTVLNAPLGTEILVLEMGMRGLGEI 178
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +A+P+I V+ N+G +HLE L + E +A+AK E+ + + + +LNA+D L
Sbjct: 179 KALCDIAQPDIGVITNIGTTHLELLLTQERIAQAKWELIEALPMDGIAILNAEDLLSVEK 238
Query: 261 TVPRGVRKVFFGWRRG-CDVRLVAAQVAN-GGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+F+G L Q+ G LG + E +P PG H ++
Sbjct: 239 AKNDPHSTLFYGLEGAFAQPHLAGVQLRPWGALGTSFDVCFHDEKTTANLPLPGKHNVLD 298
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA AV T F V LA+ L +MR E+ G ++ND YNANP+S +A++
Sbjct: 299 ALAALAVGTAFDVPLAEGCGGLGELELSKMRLEIRSGVFGTTLINDVYNANPVSMQASLQ 358
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+LK+ A K V ILG+M ELG++ H ++
Sbjct: 359 VLKERAGENKTVAILGEMYELGTSAESGHREV 390
>gi|108762254|ref|YP_633747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myxococcus xanthus DK 1622]
gi|108466134|gb|ABF91319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myxococcus xanthus DK 1622]
Length = 466
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 131/367 (35%), Positives = 186/367 (50%), Gaps = 16/367 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV-CNNWDKGFVQVE 107
+CTDTR L P F A+ G+ FDAH F+ G V+ G E
Sbjct: 30 VCTDTRALTPGC--LFVALVGERFDAHAFVDAAAKGGAAGAVVARGRPLPALPDGLTLYE 87
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ +TL +L + + R RF + V GS GK+TTK M+ L + G ++ GN
Sbjct: 88 VD---DTLRALGALGRHHRQ-RFRIPVCAVGGSNGKTTTKEMVGAILATRG-PALKTEGN 142
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L ++ AV+E+GM+ GEI LAR+ +P+ V+ V HLE LGS
Sbjct: 143 LNNEIGVPLTLFRLEPRHVAAVIEVGMNQPGEIERLARVVQPDAGVITVVQPEHLEGLGS 202
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+E VA A+GE+FQE G V+N DD L+ G +++ FG DVRL +
Sbjct: 203 IEGVAAAEGELFQEMGHGTTIVVNVDDALIPAQAERSGAQRLTFGRAEHADVRLADVKTL 262
Query: 288 NGGLGVQVVLEKERE---MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
V V RE + FV P H A NA AA AVA G + + L +
Sbjct: 263 GREGMVATVRHLGREWPVRLHFVGP----HNAQNATAAFAVALALGYTPEECVRGLESAR 318
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD-IACNGKRVVILGDMLELGSTE 403
P R ++ + G+ +++D YNANP S AA++ L + +G+ VV+LGDMLELG E
Sbjct: 319 PYSRRLNVVDGQHGVTVIDDCYNANPASMDAALETLGTLVPASGRAVVVLGDMLELGPGE 378
Query: 404 RESHEKI 410
E H ++
Sbjct: 379 LEEHARL 385
>gi|311742802|ref|ZP_07716611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aeromicrobium marinum DSM 15272]
gi|311314430|gb|EFQ84338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aeromicrobium marinum DSM 15272]
Length = 458
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 200/398 (50%), Gaps = 26/398 (6%)
Query: 35 SVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ 94
+ +G+ GP I D+R + P F AI G+H D H + + +
Sbjct: 16 TAHGRARVTGPATI---DSRDVPPGG--LFVAIPGEHVDGHAYAEAAVRAGAAAVLCTRP 70
Query: 95 VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154
V V V + L+ A + R R S VG+TGS GK++TK ++A L
Sbjct: 71 VAAPH----VLVP---DATVALGLLARATHDRLDRLS--TVGLTGSSGKTSTKDLLAHVL 121
Query: 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV 214
E L V + G++NN +GV L+++ D + V+EMG G+G I L R++ P++ VV
Sbjct: 122 EPLAPTVAPT-GSFNNELGVPLTVLRADPSTRYLVVEMGARGRGHIAALCRISPPDVAVV 180
Query: 215 LNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274
LNVG +H GS++D A AKGE+ + G VLNADDP VA + + + FG
Sbjct: 181 LNVGTAHQGEFGSVDDTAVAKGELVEALGPGGTAVLNADDPRVAAMAGRTAGQVLTFG-- 238
Query: 275 RGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLA 334
RG DVRLV G ++ L + FV+P G H NA A AAVA GV LA
Sbjct: 239 RGGDVRLVDLLTDAAGH-PRITLAHGPDRETFVLPQIGGHHGSNAAATAAVAVALGVDLA 297
Query: 335 QVGISLSNF---SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC---NGK 388
V L+ SP +M V G+ +V+D+YNANP S AA+ + D+ G+
Sbjct: 298 TVAARLATATVRSPHRMARH--VRPDGLVVVDDSYNANPESVAAALRSVADLGAPGDGGR 355
Query: 389 RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
VV+LG+MLELG+ + H +I + + I L+ VG
Sbjct: 356 TVVVLGEMLELGADSADHHRRIGALARELGIGLVVAVG 393
>gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoyl-alanyl-D-glutamate--2,6-diaminopimelate ligase
[Thermaerobacter marianensis DSM 12885]
gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Thermaerobacter
marianensis DSM 12885]
Length = 477
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 201/392 (51%), Gaps = 25/392 (6%)
Query: 31 EIAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
++A + G+++ G G+ D+R + P FFA+ GQ D H F++ L
Sbjct: 7 DVAAATGGRLVA-GSQGVTVEGGTVDSRRVRPGN--LFFALPGQRVDGHRFVAQALAAGA 63
Query: 87 CVGVIGNQVC----NNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
VI + + G VE +T +L ++A + R R +VG+TGS+G
Sbjct: 64 RGAVIARPLAEVLPDGAPPGTAVVE---VADTRQALADLARWVRRRRTGLRVVGITGSLG 120
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK M A L + V +S GN+N VG+ L+L+ ++ +AVLEM M G GEI
Sbjct: 121 KTTTKEMAAAVL-ARRFAVLKSAGNYNTDVGLPLTLLDLEERHQVAVLEMAMRGLGEIAR 179
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +A P++ VV V +SHLE LGSLE VA+AKGE+ + V +LNA DP V +
Sbjct: 180 LAAIAEPDVGVVTVVAESHLEFLGSLERVAQAKGELVEALPEDGVAILNAGDPRVRAMAA 239
Query: 263 PRGVRKVFFGWR-RGCDVRLVAAQVANGGLGVQVVLE---KEREMVKFVIPSPGLHLAIN 318
R + FG G DVR V + G G + LE + V+ +P P
Sbjct: 240 RTRARVLTFGHDGEGADVRAVNVE-HRGAAGSRFRLEVPGGDAATVELAVPGP--AAVTC 296
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI-KIVNDAYNANPISTRAAI 377
A AAAAV G+ A + L+ P +R+E + ++G + D YNA+P STRAA+
Sbjct: 297 ALAAAAVGVALGLDAATIAAGLAEARPAALRNE--IRQAGPWTLYIDCYNASPTSTRAAL 354
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEK 409
L+ +A + + V ILGDM ELG E H +
Sbjct: 355 HALRQVAGSRRAVAILGDMFELGDWAVEGHRE 386
>gi|423403170|ref|ZP_17380343.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-2]
gi|401649394|gb|EJS66975.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG2X1-2]
Length = 460
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 193/374 (51%), Gaps = 20/374 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D H+++ E + G V + + KG FV +TL +L +A + R
Sbjct: 57 DGHDYVK-EAFDNGAVASLWKKSYGTPPKGMPIIFVD-------DTLFALQQLAQFYR-K 107
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I+ L S V ++ GN+N+++G+ L+++ + R +
Sbjct: 108 ELNVKVIGITGSNGKTTVKDIISTIL-STTHRVHKTKGNFNSQIGLPLTILEMKRDTEFL 166
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+ +A+P++ ++ +G SHLE+LGS E++A+AK EI K +C
Sbjct: 167 ILEMGMSEKGQIRNLSIIAQPDVVIITMIGHSHLETLGSKEEIAKAKLEIIDGLKDEGLC 226
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+ L+ + FG + D L V GV L + +++ +
Sbjct: 227 LYNGDEALLLKNKNLSSINCKAFGEKYTND--LFPTNVQLDEYGVHFKLNDSK--IQYDV 282
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H +N AV + V ++ +L + MR + L +++G I+NDA+NA
Sbjct: 283 PLHGKHNILNTIVGIAVGQFYNVPTEKIQKALRQVNITHMRFQFLTAKTGFTIINDAWNA 342
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD- 427
+P S +AAI+ L+ + K+++++GDMLELG H +I I + G+
Sbjct: 343 SPSSMKAAIETLQTLNAYKKKMIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYGEL 402
Query: 428 -RVVVQCKWRKWSM 440
+V + +K+ +
Sbjct: 403 AEIVAEEARKKYDI 416
>gi|418322725|ref|ZP_12934037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus pettenkoferi VCU012]
gi|365231047|gb|EHM72110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus pettenkoferi VCU012]
Length = 454
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 188/368 (51%), Gaps = 20/368 (5%)
Query: 64 FFAITGQHFDAHEFISPELYGKG---CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVN 120
F G++ D H F+ P+ G C + D + VE +TL +L
Sbjct: 42 FIPFKGENVDGHRFV-PQALNDGAGACFHQRDTALAEEVDGPIIWVE-----DTLKALQQ 95
Query: 121 MA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
+A Y R+ ++ VTGS GK+TTK MI L + V ++ GN+NN +G+ L+++
Sbjct: 96 LAQAYLRH--VDPKVIAVTGSNGKTTTKDMIESVL-APEFKVKKTQGNYNNEIGMPLTIL 152
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+D ++++LEMGMSG EI L+++A+P+I V+ N+G+SH++ LGS E +A+AK EI
Sbjct: 153 QLDEDTEVSILEMGMSGYHEIEALSQLAQPDIGVITNIGESHMQDLGSREGIAQAKAEIV 212
Query: 240 QESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
K + + + D+PL+ ++ + + + G CD V + G+ + E
Sbjct: 213 LGMKDNGLFIYDGDEPLLKPHVQKLQQLDSLSIGLSDECDYVCQLNDVEDTGIHF-TINE 271
Query: 299 KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG 358
KE + +P G H NA A AV + + +LS MR E G
Sbjct: 272 KE----AYDLPILGTHNMKNAAIAIAVGHAMNLDYETIHRNLSQVQLTAMRMEQHKKADG 327
Query: 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDAC 418
++NDAYNA+P S RAAID + D+ +++++LGDMLELG H + +
Sbjct: 328 TVVINDAYNASPTSMRAAIDTVADMDGE-QKILVLGDMLELGEMSEVMHASVGEHTHRKG 386
Query: 419 IDLIGLVG 426
ID++ +G
Sbjct: 387 IDVVYTLG 394
>gi|423476177|ref|ZP_17452892.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6X1-1]
gi|402434150|gb|EJV66194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus BAG6X1-1]
Length = 460
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 193/374 (51%), Gaps = 20/374 (5%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNS 128
D H+++ E + G V + + KG FV +TL +L +A + R
Sbjct: 57 DGHDYVK-EAFDNGAVASLWKKSYGTPPKGMPIIFVD-------DTLFALQQLAQFYR-K 107
Query: 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIA 188
+ ++G+TGS GK+T K +I+ L S V ++ GN+N+++G+ L+++ + R +
Sbjct: 108 ELNVKVIGITGSNGKTTVKDIISTIL-STTHRVHKTKGNFNSQIGLPLTILEMKRDTEFL 166
Query: 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248
+LEMGMS KG+I L+ +A+P++ ++ +G SHLE+LGS E++A+AK EI K +C
Sbjct: 167 ILEMGMSEKGQIRNLSIIAQPDVVIITMIGHSHLETLGSKEEIAKAKLEIIDGLKDEGLC 226
Query: 249 VLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
+ N D+ L+ + FG + D L V GV L + +++ +
Sbjct: 227 LYNGDEALLLKNKNLSSINCKAFGEKYTND--LFPTNVQLDEYGVHFKLNDSK--IQYDV 282
Query: 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368
P G H +N AV + V ++ +L + MR + L +++G I+NDA+NA
Sbjct: 283 PLHGKHNILNTIVGIAVGQFYNVPTEKIQKALRQVNITHMRFQFLTAKTGFTIINDAWNA 342
Query: 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD- 427
+P S +AAI+ L+ + K+++++GDMLELG H +I I + G+
Sbjct: 343 SPSSMKAAIETLQTLNAYKKKMIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYGEL 402
Query: 428 -RVVVQCKWRKWSM 440
+V + +K+ +
Sbjct: 403 AEIVAEEARKKYDI 416
>gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,231,502]
gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Enterococcus faecium U0317]
gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0133a04]
gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0133C]
gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0133A]
gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0133B]
gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0133a01]
gi|415892438|ref|ZP_11549926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E4453]
gi|416131874|ref|ZP_11597782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus faecium E4452]
gi|424795450|ref|ZP_18221305.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium S447]
gi|424856320|ref|ZP_18280559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R499]
gi|424949232|ref|ZP_18364922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R496]
gi|424956290|ref|ZP_18371078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R446]
gi|424967918|ref|ZP_18381588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1140]
gi|424995505|ref|ZP_18407381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV168]
gi|424997412|ref|ZP_18409174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV165]
gi|425000502|ref|ZP_18412061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV161]
gi|425003234|ref|ZP_18414611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV102]
gi|425011166|ref|ZP_18422078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E422]
gi|425017561|ref|ZP_18428062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium C621]
gi|425033449|ref|ZP_18438417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 515]
gi|425034929|ref|ZP_18439785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 514]
gi|425040929|ref|ZP_18445363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 511]
gi|425047568|ref|ZP_18451516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 509]
gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,231,502]
gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Enterococcus faecium U0317]
gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0133a01]
gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0133B]
gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0133A]
gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0133C]
gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0133a04]
gi|364093334|gb|EHM35614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E4453]
gi|364093512|gb|EHM35777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus faecium E4452]
gi|402924388|gb|EJX44600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium S447]
gi|402930200|gb|EJX49879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R499]
gi|402934932|gb|EJX54226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R496]
gi|402946394|gb|EJX64675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R446]
gi|402953337|gb|EJX71062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1140]
gi|402977157|gb|EJX92996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV168]
gi|402986312|gb|EJY01443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV165]
gi|402988976|gb|EJY03940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV161]
gi|402992430|gb|EJY07138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV102]
gi|402997719|gb|EJY12028.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E422]
gi|403004082|gb|EJY17912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium C621]
gi|403009947|gb|EJY23360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 515]
gi|403018996|gb|EJY31632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 514]
gi|403027272|gb|EJY39166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 511]
gi|403033363|gb|EJY44869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 509]
Length = 450
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 196/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 4 TIQEIAQAVGSECSALTKITNVEFDSRKIT--EGSLFVPLAGTR-DGHEFIQQ------- 53
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q N V + L ++ +A Y + +V +TGS GK
Sbjct: 54 -AITNGASASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 112 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 230
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 231 LVQTVTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 283
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 284 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 343
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 344 PTKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,231,410]
gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0082]
gi|424819379|ref|ZP_18244486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R501]
gi|424984733|ref|ZP_18397252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV69]
gi|424987724|ref|ZP_18400085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV38]
gi|424990962|ref|ZP_18403148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV26]
gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,231,410]
gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX0082]
gi|402926240|gb|EJX46292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R501]
gi|402967954|gb|EJX84465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV69]
gi|402973746|gb|EJX89846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV38]
gi|402978216|gb|EJX93974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV26]
Length = 450
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 196/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 4 TIQEIAQAVGSECSALTKITNVEFDSRKIT--EGSLFVPLAGTR-DGHEFIQQ------- 53
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q N V + L ++ +A Y + +V +TGS GK
Sbjct: 54 -AITNGASASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 112 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 230
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 231 LVQTVTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 283
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 284 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 343
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 344 PTKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,230,933]
gi|424976046|ref|ZP_18389164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1137]
gi|424981968|ref|ZP_18394658.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV99]
gi|425022463|ref|ZP_18432644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium C497]
gi|425030172|ref|ZP_18435375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium C1904]
gi|425044372|ref|ZP_18448535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 510]
gi|425053413|ref|ZP_18456958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 506]
gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,230,933]
gi|402952004|gb|EJX69865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1137]
gi|402962167|gb|EJX79136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV99]
gi|403002696|gb|EJY16643.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium C497]
gi|403004114|gb|EJY17942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium C1904]
gi|403029940|gb|EJY41661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 510]
gi|403030419|gb|EJY42103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 506]
Length = 450
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 196/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 4 TIQEIAQAVGSECSALTKITNVEFDSRKI--TEGSLFVPLAGTR-DGHEFIQQ------- 53
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q N V + L ++ +A Y + +V +TGS GK
Sbjct: 54 -AITNGASASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 112 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 230
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 231 LVQTVTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 283
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 284 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 343
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 344 PTKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
faecium DO]
gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E1162]
gi|389867362|ref|YP_006374785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium DO]
gi|430831941|ref|ZP_19449989.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0333]
gi|430847434|ref|ZP_19465271.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1133]
gi|431544299|ref|ZP_19518595.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1731]
gi|431767953|ref|ZP_19556396.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1321]
gi|431769543|ref|ZP_19557951.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1644]
gi|431773401|ref|ZP_19561726.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2369]
gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
faecium DO]
gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E1162]
gi|388532611|gb|AFK57803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium DO]
gi|430480582|gb|ELA57756.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0333]
gi|430537054|gb|ELA77407.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1133]
gi|430592411|gb|ELB30426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1731]
gi|430630041|gb|ELB66418.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1321]
gi|430636648|gb|ELB72712.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2369]
gi|430636857|gb|ELB72911.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1644]
Length = 470
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 196/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 24 TIQEIAQAVGSECSALTKITNVEFDSRKIT--EGSLFVPLAGTR-DGHEFIQQ------- 73
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q N V + L ++ +A Y + +V +TGS GK
Sbjct: 74 -AITNGASASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 131
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 132 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 190
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 191 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 250
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 251 LVQTVTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 303
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 304 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 363
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 364 PTKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQM 409
>gi|431776499|ref|ZP_19564760.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2560]
gi|431779583|ref|ZP_19567776.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E4389]
gi|431782612|ref|ZP_19570745.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E6012]
gi|431784439|ref|ZP_19572478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E6045]
gi|430640818|gb|ELB76646.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2560]
gi|430641684|gb|ELB77479.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E4389]
gi|430647249|gb|ELB82697.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E6012]
gi|430649534|gb|ELB84910.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E6045]
Length = 470
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 196/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 24 TIQEIAQAVGSECSALTKITNVEFDSRKIT--EGSLFVPLAGTR-DGHEFIQQ------- 73
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q N V + L ++ +A Y + +V +TGS GK
Sbjct: 74 -AITNGASASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 131
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 132 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 190
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 191 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 250
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 251 LVQTVTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 303
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 304 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 363
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 364 PTKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQM 409
>gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Herminiimonas arsenicoxydans]
Length = 455
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 127/385 (32%), Positives = 202/385 (52%), Gaps = 23/385 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R +A F A+ G+ FDAH F+ P++ + V+ ++ + + V
Sbjct: 26 VSTDSRHVA--VGNLFVALRGERFDAHAFL-PQVAERKVAAVVAEKIPAGLNVPALIVP- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALES-LGV-NVFQSYG 166
+T +L MA Y R +F+ L+GVTGS GK+T K MIA L++ G N + G
Sbjct: 82 ----DTRMALGEMASYWRR-QFNLPLIGVTGSNGKTTVKEMIAAILDAAFGPDNYLATRG 136
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV L+L+ ++ A AV+E+GM+ GEI L+ +A+P + +V N H E +
Sbjct: 137 NFNNDIGVPLTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTVGLVNNAQREHQEFME 196
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADD---PLVANLTVPRGVRKVFFGWRRGCDVR-LV 282
S+E VA+ G + V V ADD PL + R + + FG+ DVR
Sbjct: 197 SVEAVAQENGAVLASLPADGVAVFPADDAFTPLWRSYAAQR--KTLTFGFSADADVRCTY 254
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
AA V G + + + + + G+H NA AA A G++ + L
Sbjct: 255 AANV----FGNDMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQA 310
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F+PV R + ++ SG +++D YNANP S RAAID+L +A R+++LGDM E+G+
Sbjct: 311 FAPVSGRLQRKLAASGALVIDDTYNANPDSVRAAIDVLAQMAS--PRILVLGDMGEVGND 368
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
R+ HE+I +Y I+ + +G+
Sbjct: 369 GRQYHEEIGAYARANGIEHVLALGE 393
>gi|383327537|ref|YP_005353421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus faecium Aus0004]
gi|430855629|ref|ZP_19473337.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1392]
gi|431755817|ref|ZP_19544462.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2883]
gi|378937231|gb|AFC62303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus faecium Aus0004]
gi|430546684|gb|ELA86627.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1392]
gi|430616432|gb|ELB53346.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2883]
Length = 470
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 196/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 24 TIQEIAQAVGSECSALTKITNVEFDSRKI--TEGSLFVPLAGTR-DGHEFIQQ------- 73
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q N V + L ++ +A Y + +V +TGS GK
Sbjct: 74 -AITNGASASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 131
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 132 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 190
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 191 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 250
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 251 LVQTVTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 303
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 304 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 363
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 364 PTKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQM 409
>gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
gi|167654405|gb|EDR98534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anaerostipes caccae DSM 14662]
Length = 451
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 205/411 (49%), Gaps = 34/411 (8%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
TI +I + G +L P + TD+R + P+ F I G+ +AH+F+ L
Sbjct: 4 MTIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHT--LFVPIVGERVNAHKFVESALK 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G + + Q EG + +TL ++ +A + RN + S ++G+TG
Sbjct: 62 DGGA----------SLTQEHEQAEGPHPIIKVPDTLKAMQQIASFYRN-KMSLPIIGITG 110
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TT+ MIA L+ VF++ GN N++VGV L+L + I VLEMGMS G+
Sbjct: 111 SVGKTTTREMIAHVLKG-KYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQ 169
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L + RP VV NVG SH+E +GS +++ R K +I V LN D+ ++
Sbjct: 170 ITILGEIIRPNAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDNDMIRK 229
Query: 260 ----LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
+T P FFG+ + C R ++ NG V E RE V ++ G H
Sbjct: 230 HIGYVTHPYE----FFGFSKDCSYRAEDSKEINGQTHFTFVHEDMREPV--ILNVLGNHN 283
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
NA AA A+ + V + + L+ FS + + ++ G +++DAYNA+P S +A
Sbjct: 284 VSNALAAIALGLAYDVPMETIKRQLATFSG---QRQNILKIHGYTVIDDAYNASPDSMKA 340
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ +L D +G++V +L DMLELG + H ++ + A I + + G
Sbjct: 341 GLKILSDYQDSGRKVAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITG 391
>gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Epulopiscium sp. 'N.t. morphotype B']
Length = 458
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 198/379 (52%), Gaps = 14/379 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R NK F + G+ FD H++I ++ G + + ++ ++ + + +
Sbjct: 30 IFTDSR-QKVNKG-LFVPLIGEKFDGHDYID-DVKAMGALATLTSKKNDSVHQDLITIAV 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+T +L+++A Y +S+ ++ +TGSVGK+TTK M+A LE+ + V ++ GN+
Sbjct: 87 E---DTQKALLDVARY-YSSKVDRPIIAITGSVGKTTTKEMVAAVLETT-LKVHKTVGNY 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV ++ + ++V+EMGM+ GE+ L + +P+ V+ N+G +H+E L S
Sbjct: 142 NNEIGVPKTMFALSEDDQVSVIEMGMNHFGELSRLTSVVKPDFAVITNIGTAHIEHLESR 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E + +AK EI + K ++N D+PL L + + FG+ D + V
Sbjct: 202 EGILKAKLEILEGLKPEGTVIINGDEPL---LMGKKQDNWITFGFDPRLD--YCVSNVVT 256
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
G+ + V+ + K IPSPG+H+A+NA A +A + ++ ++N+ +M
Sbjct: 257 YGVFTEAVVYTPNSVFKIKIPSPGVHMALNALIAIIIAEKLEIPRDKIIKGIANYKSEKM 316
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHE 408
R + + +++D YNAN S AA+ +L + +++ ILGD+ ELG H
Sbjct: 317 RMN-ITNVGNFTVIDDTYNANYDSMVAAMKVLGNYLTKNRKIAILGDIFELGKYSESIHR 375
Query: 409 KILSYCCDACIDLIGLVGD 427
+ Y + I+ + +GD
Sbjct: 376 NLGEYIASSRINCVFTIGD 394
>gi|359445153|ref|ZP_09234903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudoalteromonas sp. BSi20439]
gi|358040970|dbj|GAA71152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudoalteromonas sp. BSi20439]
Length = 462
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 199/391 (50%), Gaps = 27/391 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L + F A+ G +FD H+FI + KG +GVI + + FV +
Sbjct: 27 INTDTRTLC--DGEVFLALKGPNFDGHKFIE-QAKQKGAIGVIVDHAVDTDIAQFVVADT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ T+ + V MA A + + +TGSVGK+T K M A L S G +V + GN+
Sbjct: 84 RIALGTIGTAV-MAQVAPKT------IAITGSVGKTTVKEMCAAILSSKG-DVLATKGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ AV+E+G + GEI M +P++ VV NV +HLE GSL
Sbjct: 136 NNDIGVPLTLLRLEPQHRFAVIELGANHIGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR--KVFFGWRR----GCDVRLV 282
+ VA+AKGEI+ K + ++N D R K F + D+ L
Sbjct: 196 QGVAQAKGEIYDGLKEDGIAIVNCDSDFSQYWLDKLATRNIKCFSSSEKLDIWAEDISLD 255
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A A+ L ++ V + PG H NA AAA+ + F VSL + +L+
Sbjct: 256 AQARAS------FTLCTKQHSVPVKLALPGKHNISNALIAAALTSEFDVSLKDIASALAT 309
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
V+ R L+ + + I++D YNAN S +AAIDLL DI G R++ LGDM ELG
Sbjct: 310 MGEVKGRVNLIEASDSLTIIDDTYNANVKSVKAAIDLLSDI--QGHRILALGDMGELGED 367
Query: 403 ERESHEKILSYCCDACIDLIGLVGDRVVVQC 433
R+ H+++ Y ID + +G V+ +C
Sbjct: 368 ARKYHQEVGEYALAQGIDELFTLG--VLSKC 396
>gi|374710330|ref|ZP_09714764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Sporolactobacillus inulinus CASD]
Length = 462
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/387 (29%), Positives = 197/387 (50%), Gaps = 25/387 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGV------IGNQVCNNWDKG 102
I TD+R P++N F + G HF+ H+FI+ + + + + ++
Sbjct: 28 IMTDSR--RPHRNSLFVPLIGDHFNGHQFINKAIENGAAAALWMEREPLPQDLPASFPLF 85
Query: 103 FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
V +TL +L NMA N + ++ VTGS GK+TTK M+ L F
Sbjct: 86 LVH-------DTLKALQNMAKGYLN-QVQPKVIAVTGSNGKTTTKDMLYSILRG-AFRTF 136
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ GN NN +GV L+++ + ++ VLEMGM+ GE+ L+++A+P + ++ N+G+SH+
Sbjct: 137 KTQGNLNNHIGVPLTILAMPEDTEVLVLEMGMNHFGELTFLSQIAKPNVALITNIGESHI 196
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-TVPRGVRKVFFGWRRGCDVRL 281
E LGS +A+AK EI K +L+ D+PL+A + T + + +G +
Sbjct: 197 EYLGSRAGIAKAKLEIVNGLKKHGTLILDGDEPLLAPVQTNAFQIVRCGYGDHNNWHIE- 255
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
V G++ L ++ F +P G H NA + A A + G + + L+
Sbjct: 256 ---DVEESPTGMRFSLRGQKH--PFDLPVLGKHNVKNAALSFAAARVIGTDVDTIRHGLA 310
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
+ +R E L +G ++ND YNANP S +A+++ LK+++ +RV +LGDM ELG
Sbjct: 311 HLQLTHLRFERLNGLNGSLLINDCYNANPTSMKASLETLKNMSGFDRRVAVLGDMYELGK 370
Query: 402 TERESHEKILSYCCDACIDLIGLVGDR 428
E+ H+ + + ++ +GD+
Sbjct: 371 NEKVMHKGVAAELTPPLTHVV-TIGDK 396
>gi|319952318|ref|YP_004163585.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate/d-alanyl-d-alanyl ligase [Cellulophaga
algicola DSM 14237]
gi|319420978|gb|ADV48087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulophaga
algicola DSM 14237]
Length = 436
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 188/378 (49%), Gaps = 24/378 (6%)
Query: 34 ESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN 93
E ++ LK+ I TDTR + K+ FFA+ G++FD + + L VI +
Sbjct: 16 EKLHELFLKFST---ISTDTRKVT--KDCIFFALKGENFDGNTYAKKALESGAKYAVIDD 70
Query: 94 QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALA 153
+ + D + + L L +A + RN + ++ +TGS GK+TTK +I
Sbjct: 71 ERFADSDATILVPD------VLTCLQQLANFHRN-FYKTKVIALTGSNGKTTTKELINSV 123
Query: 154 LESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRV 213
L + GN NN +GV L+L+ I +IA++EMG + + EI L +A P+
Sbjct: 124 L-CTTYKTIATVGNLNNHIGVPLTLLAIKEDTEIAIIEMGANHQKEIEFLCNIAEPDFGY 182
Query: 214 VLNVGDSHLESLGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLVANLTVPRGVRKVFFG 272
+ N G +HLE GS E V + K E++ K NADD L AN + + K FG
Sbjct: 183 ITNFGKAHLEGFGSFEGVIKGKSELYDYLQKDEKPIFFNADDELQAN-KLSNYINK--FG 239
Query: 273 WRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVS 332
+ D Q+ VQ++ E + E+V +I G + IN CAA + F VS
Sbjct: 240 FSE-TDSHYYNIQLKEADPFVQIIFENQ-EIVSNLI---GAYNFINCCAAIIMGKYFNVS 294
Query: 333 LAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVI 392
+ Q+ + + P RS++L + +I+ DAYNANP S +AA+D + K++V
Sbjct: 295 IDQIKNGIERYIPSNNRSQVLTQNTN-EIILDAYNANPSSMKAALDNFSKLKTT-KKIVF 352
Query: 393 LGDMLELGSTERESHEKI 410
LGDM ELGST E H+ I
Sbjct: 353 LGDMFELGSTAPEEHQHI 370
>gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
gi|359437065|ref|ZP_09227139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudoalteromonas sp. BSi20311]
gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
gi|358028244|dbj|GAA63388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudoalteromonas sp. BSi20311]
Length = 462
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 199/391 (50%), Gaps = 27/391 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L + F A+ G +FD H+FI + KG +GVI + + FV +
Sbjct: 27 INTDTRTLCDG--EVFLALKGPNFDGHKFIE-QAKQKGAIGVIVDHAVDTDIAQFVVADT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ T+ + V MA A + + +TGSVGK+T K M A L S G +V + GN+
Sbjct: 84 RIALGTIGTAV-MAQVAPKT------IAITGSVGKTTVKEMCAAILSSKG-DVLATKGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ AV+E+G + GEI M +P++ VV NV +HLE GSL
Sbjct: 136 NNDIGVPLTLLRLEPQHRFAVIELGANHIGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR--KVFFGWRR----GCDVRLV 282
+ VA+AKGEI+ K + ++N D R K F + D+ L
Sbjct: 196 QGVAQAKGEIYDGLKEDGIAIVNCDSDFSQYWLDKLATRNIKCFSSSEKLDIWAEDISLD 255
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A A+ L ++ V + PG H NA AAA+ + F VSL + +L+
Sbjct: 256 AQARAS------FTLCTKQHSVPVKLALPGKHNISNALIAAALTSEFDVSLEDIASALAT 309
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
V+ R L+ + + I++D YNAN S +AAIDLL DI G R++ LGDM ELG
Sbjct: 310 MGEVKGRVNLIEASDSLTIIDDTYNANVKSVKAAIDLLSDI--QGHRILALGDMGELGED 367
Query: 403 ERESHEKILSYCCDACIDLIGLVGDRVVVQC 433
R+ H+++ Y ID + +G V+ +C
Sbjct: 368 ARKYHQEVGEYALAQGIDELFTLG--VLSKC 396
>gi|390943189|ref|YP_006406950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Belliella baltica DSM 15883]
gi|390416617|gb|AFL84195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Belliella baltica DSM 15883]
Length = 432
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 195/393 (49%), Gaps = 39/393 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL-YGKGCVGVIGNQVCNNWDKGFVQVE 107
+ TDTR + ++ FFA+ G +F+A+ F + L G V V +V N D + VE
Sbjct: 16 VSTDTRKI--DQGNIFFALKGPNFNANTFAAQALEIGAALVVVDEAEVIPNNDTRYFLVE 73
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L +L +A + R + S ++G+TGS GK+T+K ++ L+ + GN
Sbjct: 74 -----DVLTALQQLALHHRR-QLSIPIIGLTGSNGKTTSKELLHAVLKQ-KFKTSATVGN 126
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L+ I++ +IA++EMG + +G+I EL +A P + N+G +HLE +G
Sbjct: 127 LNNHIGVPLTLLAIEKDTEIAIIEMGANKQGDIKELCDIAEPTHGFITNIGKAHLEGMGG 186
Query: 228 LEDVARAKGEIFQESKLGDVCV-LNADDPLVANLTVPRGVRKVFFGWRRG-CDVRLVAAQ 285
E V + K E+FQ + V +N+ DP+++N+ R + + + C+V V A
Sbjct: 187 PEGVLKTKTELFQHLRAHKGTVFINSQDPILSNM-AKRFENPILYPAKGDFCEVEFVDA- 244
Query: 286 VANGGLGVQVVLEKEREMVKFVIP-SPGLHLAI--------NACAAAAVATLFGVSLAQV 336
V+F + S HL+ N A + FGVS+ +
Sbjct: 245 ---------------NPFVRFKVEGSEATHLSSMIGAYNFGNIATAITLGKFFGVSIEKA 289
Query: 337 GISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDM 396
++ N+ P MRS+L+ RS + I+ DAYNANP S AI ++ +++ILGDM
Sbjct: 290 VQAIVNYKPSNMRSQLVEKRSNL-IILDAYNANPSSMEVAIKTFGEMTGKKYKMIILGDM 348
Query: 397 LELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
ELG + + HEK+ D I G
Sbjct: 349 YELGDSTQVEHEKLGELVSQYAFDKICFAGKHT 381
>gi|392546796|ref|ZP_10293933.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas rubra ATCC
29570]
Length = 467
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 131/383 (34%), Positives = 196/383 (51%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR ++ +N+ F A+ G +FD H+F++ + KG + I V + D Q+
Sbjct: 27 INTDTRTIS--ENEVFLALKGPNFDGHKFVA-QAQQKGAIAAI---VDHPVDVDIPQLVV 80
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L L A + S + +TGSVGK+T K M A L LG V + GN+
Sbjct: 81 KDTRLALGQL----GQAVIRQVSPKTLAITGSVGKTTVKEMSAAILSRLG-KVLATAGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + + AV+E+G + GEI + + P++ VV NV +H+E GS+
Sbjct: 136 NNDIGVPLTLLRLSEDDEFAVIELGANHIGEIAYTSNLVNPDVAVVCNVAPAHIEGFGSI 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD---DPL-VANLTVPRGVRKVFFGWRRGCDVRLVAA 284
E V +AKGEIF K V VLN D P+ LT R R F + D L
Sbjct: 196 EGVGQAKGEIFSGLKDNGVAVLNCDCRFAPMWEHTLTTQRTSR---FSMAQQLD--LWVE 250
Query: 285 QVANGGLG-VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+++ LG L + + V +P PG H +NA AA+ G +L V +L +
Sbjct: 251 EISLDTLGRATFALCQGTQRVTITLPLPGEHNVMNALIAASCTVQLGATLEDVKGALESM 310
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
+ V+ R L+ +++++D+YNAN S +AAIDLL + G RV LGDM ELG
Sbjct: 311 AEVKGRVNLIEVSETLRVIDDSYNANVRSVKAAIDLLAGMP--GYRVFALGDMSELGEEA 368
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
R+ HE++ Y + ID + +G
Sbjct: 369 RQYHEEVGEYAKEKGIDALFSLG 391
>gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
silvestris BL2]
gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
silvestris BL2]
Length = 498
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 129/432 (29%), Positives = 206/432 (47%), Gaps = 28/432 (6%)
Query: 11 ACTSKTTFRCPSNSPIWT----INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFA 66
A +S+T R P+WT + + ++G + G G+ DTR L P FFA
Sbjct: 9 ASSSETARRSEPQEPLWTGLGLVAPLEARISGGAPRRGATGV-SIDTRTLCPG--DLFFA 65
Query: 67 ITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDK-GFVQVEGNGNVNTLNSLVNMACYA 125
I+G + D H++++ L V+ + + G + V + + L L A
Sbjct: 66 ISGFNSDGHDYVAAALEKGALAAVVDEAHAESLARLGPLYVVRDDVLAALERL----GVA 121
Query: 126 RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185
+R + VTGSVGK++TK + LAL + G S ++NN GV L+L + R
Sbjct: 122 ARARTRARIAAVTGSVGKTSTKEALRLALSAAG-RTHASVASYNNHWGVPLTLARMPRQT 180
Query: 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLG 245
+ V E+GM+ +GEI L RM RP + ++ V H+E+ +E +A AK EIF + G
Sbjct: 181 EFGVFEIGMNHQGEITPLTRMVRPHVAIITTVAPVHMENFTGVEAIADAKAEIFAGLEPG 240
Query: 246 DVCVLNADDPLVANLTVPRGVRK----VFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE- 300
V +L AD+P L FG + + RL+ ++A ++E +
Sbjct: 241 GVAILPADNPQFERLAAAAKRSAAGLVTSFGADKHAEARLLDVRLAAD----HSMVEADI 296
Query: 301 -REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSR 356
+++ + + +PG HLA+N+ A A GV + +L++F+ R EL
Sbjct: 297 CGQLLTYRLGAPGRHLAMNSLAVLLAAKALGVDPREAAQTLASFAAQPGRGQRLELQAPD 356
Query: 357 SGIKIVNDAYNANPISTRAAIDLLKDIA--CNGKRVVILGDMLELGSTERESHEKILSYC 414
+++++YNANP S RAA DL +A G+RV +LGDMLELGS + H +
Sbjct: 357 GAFTLIDESYNANPASMRAAFDLAGALAPPSPGRRVAVLGDMLELGSHAADMHAGLAQDL 416
Query: 415 CDACIDLIGLVG 426
DL+ G
Sbjct: 417 AANHFDLVFAAG 428
>gi|386318743|ref|YP_006014906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus pseudintermedius ED99]
gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Staphylococcus pseudintermedius ED99]
Length = 454
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 195/384 (50%), Gaps = 23/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCNNWDKG---FV 104
+ D+R + Q F G++ D H++ L G G + G FV
Sbjct: 29 VTIDSRHI--QHGQLFIPFKGENVDGHQYSEQALNDGAGATFFQRDSTLTAPTNGPVVFV 86
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+ NTL +L +A A + ++ VTGS GK+TTK M+ L S V ++
Sbjct: 87 E-------NTLTALQQLAK-AYLQHVAPTVIAVTGSNGKTTTKDMLENVL-SGKFRVQKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+++ ++ ++++LEMGMSG EI L+ +A+P+ V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPDFAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + D+PL+ ++ +V G D++
Sbjct: 198 LGSREGIAKAKFEIVSGLKSEGYFIYDGDEPLLKPHVETLTSAHQVSVGLSAKNDMQCQM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
G+ V + V + IP G H NA A AV + G++ Q+ L++
Sbjct: 258 VSHLEEGITFTV-----NDDVTYTIPILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSL 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR + ++ +G ++NDAYNA+P S +AAID L + G+ +++LGD+LELG
Sbjct: 313 KLTDMRMQKFMAPNGAMVINDAYNASPTSMKAAIDTLSHM--KGETILVLGDVLELGEQS 370
Query: 404 RESHEKILSYCCDACIDLIGLVGD 427
R+ HE + +Y + I + G+
Sbjct: 371 RQLHESVGAYLENKGIHQLYTFGE 394
>gi|392536655|ref|ZP_10283792.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas marina mano4]
Length = 460
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 128/391 (32%), Positives = 199/391 (50%), Gaps = 27/391 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + + F A+ G +FD H+FI+ E KG +GVI + + F+
Sbjct: 27 INTDTRTVC--EGEVFLALKGPNFDGHKFIA-EAKQKGAIGVIVDHKVDVDIAQFI---- 79
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
VN + A ++ + + +TGSVGK+T K M A L G +V + GN+
Sbjct: 80 ---VNDTRIALGAIGTAVMAQVAPRTIAITGSVGKTTVKEMCAAILSVHG-DVLATKGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ AV+E+G + GEI MA+P++ VV NV +HLE GSL
Sbjct: 136 NNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRGVRKVFFGWRRGC---DVRLV 282
VA+AKGEIF K V ++N D + R +++ + D+ L
Sbjct: 196 MGVAKAKGEIFDGLKENGVAIINCDSEFSQYWLDKLEGRNIKRFSTSEKLDIWAEDISLD 255
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A A+ L +++ V + PG H NA AAA+ + V+L + +L+
Sbjct: 256 ANARAS------FTLCTKQKKVPVTLALPGKHNISNALIAAALTSELDVTLDDIAHALAT 309
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
V+ R L+ + +V+D YNAN S +AAIDLL D+ G R++ LGDM ELG
Sbjct: 310 MGDVKGRVNLIEVSDMLTVVDDTYNANVKSVKAAIDLLSDM--QGHRILALGDMGELGED 367
Query: 403 ERESHEKILSYCCDACIDLIGLVGDRVVVQC 433
R+ H+++ Y + ID + +G V+ +C
Sbjct: 368 ARKYHQEVGEYALEKGIDELFTLG--VLSKC 396
>gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus jensenii 269-3]
gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Lactobacillus jensenii 1153]
gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus jensenii 269-3]
gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Lactobacillus jensenii 1153]
gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
Length = 455
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 125/404 (30%), Positives = 200/404 (49%), Gaps = 25/404 (6%)
Query: 31 EIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
EIA++++ I P I + D+R L N+N F + G+ D H+FI+ + G V
Sbjct: 7 EIAKALDTTIEGNSDPVISSVAFDSRKL--NENSLFVPLKGER-DGHDFINSAI-ANGAV 62
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ W+KG GN + +TL ++ +A Y N + + +VG+TGS GK+
Sbjct: 63 ATL-------WEKGHPNKPGNFPLIEVDDTLAAMQELAKYYLN-KVNPAVVGITGSNGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M+A L S NV ++ N+NN +GV ++++ + +I VLEMGM G++ L+
Sbjct: 115 TTKDMVAAVL-SKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLS 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+ +P++ V+ +G++H+E GS + +A AK EI K + N D+PL+
Sbjct: 174 SLVKPDVCVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKI 233
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
K FG+ D + A + + E KF IP G H NA AA
Sbjct: 234 TQVKSTFGF---SDQDTIHALEFKSYMHHASFVTNSSEQ-KFSIPMIGKHNVSNAMAAIC 289
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
V FG S ++ SLS+F+P R + G I++D YN+NP + +A + +
Sbjct: 290 VGHHFGESDDEIAASLSDFTPTANRMQWRKGDVGEDIMDDIYNSNPTAAKAVLTSFGQVE 349
Query: 385 C--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+R+ +LGDMLELG+ E H + I+ + L G
Sbjct: 350 VPEGGRRIAVLGDMLELGAASAELHASLADKLDPLVINEVYLYG 393
>gi|424910835|ref|ZP_18334212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392846866|gb|EJA99388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 477
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 203/416 (48%), Gaps = 25/416 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT+ ++ G+ + P GI I D+R + P + FFAI G D H++ S +
Sbjct: 4 LWTVADMIAITAGRPVGNLPTGITGISIDSRTVKPGEA--FFAIKGDRVDGHDYTSFAVA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + VE + L +L +A AR R S ++ VTGS
Sbjct: 62 NGAGLLVVAEAKLPALGRLTVPMIVVE-----DVLAALGKLAIAARQ-RTSARIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ AL G V + ++NN GV L+L + + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRQALAPSG-RVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +M RP + ++ + +HL + ++E++A AK EIF+ + G +LN D+ L
Sbjct: 175 RPLVKMVRPHVAIITTIAPAHLGNFNNIEEIAAAKAEIFEGVEQGGSVILNRDNAQFEQL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+G+ + FG D RL + G + +L E + I PG H+A
Sbjct: 235 EEAAQEQGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHLNI--PGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA A + G +L + +L + V+ R L ++ +++++YNANP S
Sbjct: 293 DNAMAVLGAVAITGANLDRAFEALGSLEAVKGRGQRHHLQINGGSFLLIDESYNANPASM 352
Query: 374 RAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
RA+I +L + +G+RV +LGDMLE+G + HE++ A I+ + L G+
Sbjct: 353 RASIAVLAETPTQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGE 408
>gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oceanobacillus iheyensis HTE831]
gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15)
[Oceanobacillus iheyensis HTE831]
Length = 455
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 196/384 (51%), Gaps = 19/384 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ---VCNNWDKGFVQ 105
+ DTR P+ N + I G+ FD H FI + G + + ++ + + WD F
Sbjct: 28 VTRDTR--EPSSNSLYIPIVGERFDGHNFIFDAI-KNGAIATLWDKSIPLPSEWDNSFPV 84
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ + L N Y R+ + +VGVTGS GK+TTK +I +++ +
Sbjct: 85 FFVEDTILAMQQLAN--SYLRS--VNPTVVGVTGSNGKTTTKDLITSVVKT-SYKTTATQ 139
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +G+ L+++ + ++ VLEMGMS GEI L+++A P+ V+ N+G+SH+E+L
Sbjct: 140 GNLNNHIGLPLTILSMQPDTEVLVLEMGMSQFGEIELLSKIAEPDYTVITNIGESHIENL 199
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVAA 284
GS + +A+AK EI + K ++ D+PL+A + ++ G+ + D+ +
Sbjct: 200 GSRKGIAKAKLEIIEGIKSNGNLFIDDDEPLLAKENIDMDDSQIIGIGFTKESDINISNV 259
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+V +V + + + G H A NA A ++ +S + ++ +
Sbjct: 260 KVHPDRTTFEVTDK------PYHVNLLGEHHAKNAAFAISIGKALNISHENIQLAFNKLE 313
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
MR EL +G+ I+NDAYNA+ S +A+I ++K++ +V++LGD+LELG+
Sbjct: 314 VTGMRFELETGINGVHIINDAYNASATSMKASIQVVKEMEGFQNKVLVLGDILELGTYSE 373
Query: 405 ESHEKILSYCCDACIDLIGLVGDR 428
H I + D+ I I G++
Sbjct: 374 HYHRSI-AEVIDSRISEIYTYGEQ 396
>gi|392410068|ref|YP_006446675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfomonile tiedjei DSM 6799]
gi|390623204|gb|AFM24411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfomonile tiedjei DSM 6799]
Length = 871
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 202/394 (51%), Gaps = 17/394 (4%)
Query: 44 GPPGIICTDTRILAPNKNQWFF-AITGQHFDAHEFISPELYGKGCVGVIGNQVC---NNW 99
GP I DTR P + F AI G+HF+ ++F+ L V C +W
Sbjct: 61 GPISGISIDTR--KPMSEDFIFWAIRGEHFNGNDFVEDALSAGARAVVASRDDCFQNGSW 118
Query: 100 -DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLG 158
D +QV+ +TL +L ++A RN RF ++G+TGS GK+ K M+A L L
Sbjct: 119 PDATLIQVQ-----DTLQALQDLAATYRN-RFRYPVIGITGSNGKTLVKEMLASIL-CLE 171
Query: 159 VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVG 218
++S ++N ++G AL L+G+ +A++E G+S GE+ L RM RP+ ++ +
Sbjct: 172 RKTYRSPLSYNTQIGAALGLLGMRPEHQVAIIEAGISLPGEMDRLERMIRPDHGILTIIS 231
Query: 219 DSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCD 278
+H+ LG+LE+ K +F+ K VLNADDPL L R V FG D
Sbjct: 232 KAHIGGLGTLENTIAEKRRLFKNLKEDSFLVLNADDPLSMELAQDSKARVVTFGMSPQAD 291
Query: 279 VRLVAAQVAN-GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337
VR A + + G Q +++ + ++P G +NA AA+A ATL G S +
Sbjct: 292 VR--AENITSIPDRGHQFIMQIFGNAQQIMLPVAGRFNVLNALAASAAATLLGASPEAIA 349
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
L +F P MR E+ + +G+ ++ND YN++P+S + A+D+L + +++ IL +ML
Sbjct: 350 EGLKDFRPSPMRLEMHTTVTGVTLINDTYNSDPVSVKGALDVLAKVGKGRRKIAILSEML 409
Query: 398 ELGSTERESHEKILSYCCDACIDLIGLVGDRVVV 431
+LG RE H + + +D + VG+ +
Sbjct: 410 DLGLHSREEHLAVGKEVVRSQVDQLITVGENAAI 443
>gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
Length = 457
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 128/391 (32%), Positives = 199/391 (50%), Gaps = 27/391 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + + F A+ G +FD H+FI+ E KG +GVI + + F+
Sbjct: 24 INTDTRTVC--EGEVFLALKGPNFDGHKFIA-EAKQKGAIGVIVDHKVDVDIAQFI---- 76
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
VN + A ++ + + +TGSVGK+T K M A L G +V + GN+
Sbjct: 77 ---VNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHG-DVLATKGNF 132
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ AV+E+G + GEI MA+P++ VV NV +HLE GSL
Sbjct: 133 NNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGSL 192
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRGVRKVFFGWRRGC---DVRLV 282
VA+AKGEIF K V ++N D + R +++ + D+ L
Sbjct: 193 MGVAKAKGEIFDGLKENGVAIINCDSEFSQYWLDKLEGRNIKRFSTSEKLDIWAEDISLD 252
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A A+ L +++ V + PG H NA AAA+ + V+L + +L+
Sbjct: 253 ANARAS------FTLCTKQKKVPVTLALPGKHNISNALIAAALTSELDVTLDDIAHALAT 306
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
V+ R L+ + +V+D YNAN S +AAIDLL D+ G R++ LGDM ELG
Sbjct: 307 MGDVKGRVNLIEVSDMLTVVDDTYNANVKSVKAAIDLLSDM--QGHRILALGDMGELGED 364
Query: 403 ERESHEKILSYCCDACIDLIGLVGDRVVVQC 433
R+ H+++ Y + ID + +G V+ +C
Sbjct: 365 ARKYHQEVGEYALEKGIDELFTLG--VLSKC 393
>gi|383312877|ref|YP_005365678.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Candidatus Rickettsia amblyommii str. GAT-30V]
gi|378931537|gb|AFC70046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Candidatus Rickettsia amblyommii str. GAT-30V]
Length = 449
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVELNDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE+VA AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEVAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSSKTSAELILYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + V L+N SP + R
Sbjct: 258 GEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIVANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-MINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|363579922|ref|ZP_09312732.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavobacteriaceae bacterium HQM9]
Length = 427
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 201/389 (51%), Gaps = 26/389 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR L K Q FFA+ G FD +++ + VI + ++ V
Sbjct: 16 VCTDTRHLK--KKQLFFALKGDSFDGNKYALNAIKNGANYAVIDDPSISHNQTILVN--- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A + RN + ++ +TGS GK+TTK +I L L S N + GN+
Sbjct: 71 ----DVLETLQKLATFHRN-YLNIPIISLTGSNGKTTTKELIHLVL-SAKYNCKATSGNF 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV ++L+ ++ +I V+EMG + EI L+ +A+P + N+G +HLE GS
Sbjct: 125 NNHIGVPITLLSMNAETEIGVVEMGANHLHEIALLSEIAQPNFGYITNIGKAHLEGFGSE 184
Query: 229 EDVARAKGEIFQE-SKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E++ K E+++ K N +DP+++ + + + ++F + D ++ + A
Sbjct: 185 ENILIGKTELYRFLDKTEGTIFGNIEDPVLSEKS--KNSKAIYFSNTQNSDYKIEFIE-A 241
Query: 288 NGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
N + V +E ++ G + N A+ A+ FGV L + ++ +++P
Sbjct: 242 NPFVKVTTANIEIASNLI-------GDYNYTNIAASIAIGLHFGVDLKAIKHAIQHYTPT 294
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAI-DLLKDIACNGKRVVILGDMLELGSTERE 405
RS+L+ +++ K+V DAYNANP S AAI + K K + ILGDM ELG ++
Sbjct: 295 NNRSQLVTTKTN-KLVLDAYNANPSSMLAAIQNFEKTNTKKTKNIAILGDMFELGPYAKK 353
Query: 406 SHEKILSYCCDACIDLIGLVGDRVVVQCK 434
H+KI++Y ++ ID + L G +CK
Sbjct: 354 EHQKIITYLENSKIDKVLLAGSH-FFECK 381
>gi|408785690|ref|ZP_11197432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium lupini HPC(L)]
gi|408488409|gb|EKJ96721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium lupini HPC(L)]
Length = 477
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 204/416 (49%), Gaps = 25/416 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT+ ++ G+ + P GI I D+R + P + FFAI G D H++ S +
Sbjct: 4 LWTVADMIAITAGRPVGNLPTGITGISIDSRTVKPGEA--FFAIKGDRVDGHDYTSFAVA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + VE + L +L +A AR R S ++ VTGS
Sbjct: 62 NGAGLLVVAEAKLPALGRLTVPMIVVE-----DVLAALGKLAIAARQ-RTSARIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ AL +L V + ++NN GV L+L + + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRQAL-ALSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +M RP + ++ + +HL + ++E++A AK EIF+ + G +LN D+ L
Sbjct: 175 RPLVKMVRPHVAIITTIAPAHLGNFNNIEEIAAAKAEIFEGVEQGGSVILNRDNAQFEQL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+G+ + FG D RL + G + +L E + I PG H+A
Sbjct: 235 EEAAQEQGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHLNI--PGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA A + G +L + +L + V+ R L ++ +++++YNANP S
Sbjct: 293 DNAMAVLGAVAITGANLDRAFEALGSLEAVKGRGQRHHLQINGGSFLLIDESYNANPASM 352
Query: 374 RAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
RA+I +L + +G+RV +LGDMLE+G + HE++ A I+ + L G+
Sbjct: 353 RASIAVLAETPTQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGE 408
>gi|431036551|ref|ZP_19492321.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1590]
gi|431752973|ref|ZP_19541652.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2620]
gi|431757805|ref|ZP_19546434.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E3083]
gi|431763082|ref|ZP_19551635.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E3548]
gi|430563091|gb|ELB02322.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1590]
gi|430612934|gb|ELB49958.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2620]
gi|430618310|gb|ELB55157.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E3083]
gi|430622776|gb|ELB59486.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E3548]
Length = 470
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 197/402 (49%), Gaps = 16/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + + D+R + + F + G D HEFI + G
Sbjct: 24 TIQEIAQAVGSECSELTKITNVEFDSRKIT--EGSLFVPLAGTR-DGHEFIQ-QAITNGA 79
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
+ K F + + L ++ +A Y + +V +TGS GK+TTK
Sbjct: 80 SASFWSLPVEQAPKDFPVIP---VADPLKAMQQLATYYL-EKVGAEVVAITGSNGKTTTK 135
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
+ A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL+ MA
Sbjct: 136 DLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMA 194
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 195 QPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATLVQT 254
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVAT 327
FG G DV A A G V+E E F IP PG + NA A +
Sbjct: 255 VTTFGIGNG-DVH--AEVTAEGKAQTDFVVEGET----FTIPLPGSYNVTNALIAYTIGR 307
Query: 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNG 387
FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++ G
Sbjct: 308 FFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKG 367
Query: 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 368 RRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQM 409
>gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cryptobacterium curtum DSM 15641]
gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cryptobacterium curtum DSM 15641]
Length = 485
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 202/404 (50%), Gaps = 42/404 (10%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEF-ISPELYGKGCVGVIGNQVCNNWDKGFV---QVE 107
D+R + P + A+ G+ D +F I+ G C+ V+ + D+ Q
Sbjct: 33 DSRQVQPGC--LYVALPGERHDGFDFCINALDAGAACLLVM-----RSPDEALTLCAQRS 85
Query: 108 GNGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
G V +T + ++A R SR SG ++ +TGS GK+TTK+++ L G +V +
Sbjct: 86 GAAIVCVEDTFTAFTDLAAAWR-SRLSGSVIAITGSSGKTTTKNLVRDVLARAG-SVVAT 143
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN +GV +L+ + V+EMGM G+G+I L R RP++ +V NVG+SH+E
Sbjct: 144 QGNQNNELGVPATLLRAEEDTQFVVVEMGMRGRGQIESLCRFVRPDMALVTNVGESHIEL 203
Query: 225 LGSLEDVARAKGEIFQESKLGD-VCVLNADDPLVANLTV-----PRGVRKVFFGWRRGCD 278
LGS + +ARAK EI K + +NA D + L RGV +FF
Sbjct: 204 LGSRDGIARAKAEIIAGVKANTGIAFINASDDFASMLPAYGSADERGVEILFFDGSG--- 260
Query: 279 VRLVAAQVANGGLGVQVVLEKEREM-----VKFVIPSP-----------GLHLAINACAA 322
+ A+ A G+ V + E+ +F + +P GLH NA AA
Sbjct: 261 -KEPASYAAQDGIEVPSTFASDIELDEAGCARFTLHTPTGTASVHLALAGLHNVHNATAA 319
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AAV + G+S + + +L + + R ++ + SG+ +V+DAYNANP S +A++
Sbjct: 320 AAVGSQVGLSASVIVDALEKATSLDGRGRVVRTASGVVVVDDAYNANPDSMKASLGSFAA 379
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ G+ + +LGDM ELG T E+H +I S IDLI VG
Sbjct: 380 MHFAGRHIAVLGDMGELGDTAEEAHARIGSLVASLPIDLIICVG 423
>gi|423610620|ref|ZP_17586481.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD107]
gi|401248933|gb|EJR55250.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus VD107]
Length = 455
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 170/298 (57%), Gaps = 5/298 (1%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL +L +A + RN + ++G+TGS GK+T K +I L S NV ++ GN N+++
Sbjct: 87 DTLFALQQLARFYRNE-LNVKVIGITGSNGKTTVKDIIGTIL-STTYNVHKTKGNLNSQI 144
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ L+++ + R + +LEMGMS +G+I +L+ +A+P++ ++ +G SHLE+LGS E +A
Sbjct: 145 GLPLTILEMKRDTEFLILEMGMSEEGQIRKLSNIAQPDVAIITMIGQSHLETLGSREGIA 204
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
AK EI K + + N D+PL++ G+ FG + D+ ++ G
Sbjct: 205 NAKLEIIDGFKEKCLFLYNGDEPLLSQNNKMLGIEYKSFGEKDTNDLYPTNVRLNEYGSH 264
Query: 293 VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
++ E + V++ + G H +NA A+ + V ++ +L + MR +
Sbjct: 265 FKL---NESKKVQYDVSLHGKHNILNAIIGIAIGQFYNVPTEKIKRALRQINITDMRFQF 321
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L ++SG I+NDA+NA+P S AAI+ L+ + K+++++GDMLELG+ H +I
Sbjct: 322 LSAKSGFTIINDAWNASPSSMTAAIETLEKLNTYEKKIIVIGDMLELGNEAEAYHREI 379
>gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella ceti str. Cudo]
gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella ceti B1/94]
gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella sp. F5/99]
gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella ceti M490/95/1]
gi|340791043|ref|YP_004756508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella pinnipedialis B2/94]
gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella ceti str. Cudo]
gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella ceti B1/94]
gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella sp. F5/99]
gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella ceti M490/95/1]
gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
gi|340559502|gb|AEK54740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella pinnipedialis B2/94]
Length = 481
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 205/436 (47%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLSHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella suis ATCC 23445]
gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella suis ATCC 23445]
Length = 481
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 206/436 (47%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 ADAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANPIS
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPISM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX1330]
gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,231,408]
gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
Com12]
gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium PC4.1]
gi|424762590|ref|ZP_18190094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecalis TX1337RF]
gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX1330]
gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,231,408]
gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
Com12]
gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium PC4.1]
gi|402424480|gb|EJV56657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium TX1337RF]
Length = 450
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 197/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + + D+R + + F + G D HEFI
Sbjct: 4 TIQEIAQAVGSECSELTKITNVEFDSRKIT--EGSLFVPLAGTR-DGHEFIQQ------- 53
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q + V + L ++ +A Y + +V +TGS GK
Sbjct: 54 -AITNGASASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 112 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 231 LVQTVTTFGIGNG-DVH--AEVTAEGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 283
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 284 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 343
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 344 PTKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|421893867|ref|ZP_16324360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Pediococcus pentosaceus IE-3]
gi|385273352|emb|CCG89732.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Pediococcus pentosaceus IE-3]
Length = 460
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 185/359 (51%), Gaps = 17/359 (4%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQVEG 108
D+R L+P F I G+ D H+FIS + G V + +Q D + V+
Sbjct: 32 DSRKLSPG--SLFVPIMGER-DGHDFISQAVTA-GAVATLWAEDHQERRPADLPSILVK- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L +L +A Y + + + +V +TGS GK+TTK M A LE+ NV ++ N+
Sbjct: 87 ----NPLEALQKLAKYYLD-KINPKVVAITGSNGKTTTKDMTAAVLEA-EYNVVKTKANF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV ++++G+ ++ V+EMGM G++ L+ + +P+I V+ +G++H+E +
Sbjct: 141 NNELGVPITILGMSSNTEVLVVEMGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E +A AK EI K V N D+PL+ V + FG + DV Q +
Sbjct: 201 ERIADAKMEITDGLKEDGCFVFNGDEPLLEQRAKDLNVEQYRFGLKADNDVSASDIQGTD 260
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
+ L++E IP G + NA AA AV + + L + +L +F +
Sbjct: 261 TSTMFKTNLDEE---TTVTIPVLGDYNVTNALAAIAVGHKYHIDLKKEAEALVDFDLTKN 317
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R+E L + G +I++D YN+NP + RA +D ++ G+R+V+LGDMLELG + H
Sbjct: 318 RTEWLTGKKGERILSDVYNSNPTAARAVLDSFANVNTEGRRLVVLGDMLELGENADQMH 376
>gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aerococcus urinae ACS-120-V-Col10a]
gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aerococcus urinae ACS-120-V-Col10a]
Length = 462
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 190/377 (50%), Gaps = 45/377 (11%)
Query: 73 DAHEFISPELYGKGCVGVIGNQVCNNWDK-GFVQVEGNGNVNTLNSLVNMACYARNSRFS 131
D H+FI + + N + + +QVE +T + V++A Y +
Sbjct: 51 DGHDFIQDAIDHGAQATLWANDPADAPSEIPVIQVE-----DTFTAFVDLAKY-----YL 100
Query: 132 GVL----VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDI 187
G++ + VTGS GK+TTK M A L S NV+++ GN+NN++GV +++ + ++
Sbjct: 101 GLIGPKVIAVTGSAGKTTTKDMTAATL-STTFNVYKTQGNYNNQLGVPFTILSMPEDTEV 159
Query: 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDV 247
V+EMGMSG GEI LA++ ++ V+ +G+SH+E LGS E++A+AK EI + K
Sbjct: 160 LVVEMGMSGPGEIRFLAQLCPMDVAVITMIGESHIEFLGSRENIAKAKLEILEGLKEDGT 219
Query: 248 CVLNADDPLV--ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVK 305
+ D+PLV A + +P ++K+ G DV A + N ERE
Sbjct: 220 FIYPGDEPLVDQAVVDMPE-IKKIRVGLDDSEDV--YAENIVN-----------EREHTH 265
Query: 306 FVIP-SPGLHLAI---------NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS 355
F SP + L+I NA A AVA G+++ Q+ LS F RSE L+
Sbjct: 266 FYTNLSPNVELSIPVSGDYNVKNALMACAVAYSQGLAVEQIKTPLSQFKLTANRSEWLMG 325
Query: 356 RSGIKIVNDAYNANPISTRAAI---DLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
+ I+I+ND YNANP + RA I L+ A +V++LGDMLELG H I
Sbjct: 326 KDDIQILNDTYNANPSAMRAVIRNFSQLERPAVTSHKVLVLGDMLELGKYSASMHASIAE 385
Query: 413 YCCDACIDLIGLVGDRV 429
ID + L G +
Sbjct: 386 EIDSPHIDGVYLYGKEM 402
>gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pediococcus pentosaceus ATCC 25745]
gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pediococcus pentosaceus ATCC 25745]
Length = 460
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 185/359 (51%), Gaps = 17/359 (4%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQVEG 108
D+R L+P F I G+ D H+FIS + G V + +Q D + V+
Sbjct: 32 DSRKLSPG--SLFVPIMGER-DGHDFISQAVTA-GAVATLWAEDHQERRPADLPSILVK- 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N L +L +A Y + + + +V +TGS GK+TTK M A LE+ NV ++ N+
Sbjct: 87 ----NPLEALQKLAKYYLD-KINPKVVAITGSNGKTTTKDMTAAVLEA-EYNVVKTKANF 140
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV ++++G+ ++ V+EMGM G++ L+ + +P+I V+ +G++H+E +
Sbjct: 141 NNELGVPITILGMSSNTEVLVVEMGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTR 200
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E +A AK EI K V N D+PL+ V + FG + DV Q +
Sbjct: 201 ERIADAKMEITDGLKEDGCFVFNGDEPLLEQRAKDLNVEQYRFGLKADNDVSASDIQGTD 260
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
+ L++E IP G + NA AA AV + + L + +L +F +
Sbjct: 261 TSTMFKTNLDEE---TTVTIPVLGDYNVTNALAAIAVGHKYHIDLKKEAEALVDFDLTKN 317
Query: 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R+E L + G +I++D YN+NP + RA +D ++ G+R+V+LGDMLELG + H
Sbjct: 318 RTEWLTGKKGERILSDVYNSNPTAARAVLDSFANVNTEGRRLVVLGDMLELGENADQMH 376
>gi|373469049|ref|ZP_09560266.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium oral taxon 082 str. F0431]
gi|371765141|gb|EHO53487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium oral taxon 082 str. F0431]
Length = 457
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 202/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ--VCNNWDKGFVQV 106
I D+R NKN F + G+ DAH+F+ +Y GC I ++ + D V V
Sbjct: 29 IVIDSR--EANKNSLFVPVVGERNDAHKFLEA-VYTDGCKVAISSRKDIFLKPDFNIVLV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E NT +L ++ Y R S+ S LVG+TGSVGK+TT+ M+ALAL L VF++
Sbjct: 86 E-----NTTKALQDLGIYLR-SKLSLPLVGITGSVGKTTTREMVALALSDL--KVFKTPN 137
Query: 167 NWNNRVGVALSLIGIDRAVD--IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+N+++GV ++ I R D I V+E+GMS GE+ +A++ + + +V N+G +H+E+
Sbjct: 138 NFNSQLGVPVT---ISRITDEEIGVIELGMSMFGEMERIAKIVKCDCAIVTNIGTAHIEN 194
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAA 284
L + E++ K I K G V LNAD+ ++ + G+ FF + D A+
Sbjct: 195 LHTRENIRSEKFHITDGMKSGSVMFLNADNDMLWDPPKKEGIIYKFFSAKGNKDCDYYAS 254
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ + V + VK + G H N AA AVA + + L L++F
Sbjct: 255 DIVFHNALPEFVAHICGKSVKVALNVFGEHQISNVLAALAVADHYNLDLESASRHLASFR 314
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
R ELL ++ I +++D YNA+P S +A++ +LKD ++V +L DM ELG E
Sbjct: 315 GFAHRQELLKLKN-ITVIDDTYNASPDSMKASLSILKDFDAK-RKVAVLADMKELGVDEI 372
Query: 405 ESHEKILSYCC-DACIDLIGLVGD 427
+ H++I + + +D + VGD
Sbjct: 373 KLHKEIGEFIVKNLKLDAVFAVGD 396
>gi|431592215|ref|ZP_19521451.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1861]
gi|430591840|gb|ELB29867.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1861]
Length = 470
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 197/402 (49%), Gaps = 16/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI + G
Sbjct: 24 TIQEIAQAVGSECSALTKITNVEFDSRKIT--EGSLFVPLVGTR-DGHEFIQ-QAITNGA 79
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
+ K F + + L ++ +A Y + +V +TGS GK+TTK
Sbjct: 80 SASFWSLPVEQAPKDFPVIP---VADPLKAMQQLATYYL-EKVGAEVVAITGSNGKTTTK 135
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
+ A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL+ MA
Sbjct: 136 DLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMA 194
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 195 QPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATLVQT 254
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVAT 327
FG G DV A A G V+E E F+IP PG + NA A +
Sbjct: 255 VTTFGIGNG-DVH--AEVTAEGKAQTDFVVEGET----FMIPLPGSYNVTNALIAYTIGR 307
Query: 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNG 387
FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++ G
Sbjct: 308 FFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKG 367
Query: 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 368 RRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQM 409
>gi|410724133|ref|ZP_11363332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. Maddingley MBC34-26]
gi|410602419|gb|EKQ56899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. Maddingley MBC34-26]
Length = 454
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 213/391 (54%), Gaps = 25/391 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ EI E+V+G+I+ GI I TDTR + K+ F A+ G++F+ +++ +
Sbjct: 3 LSLKEILEAVSGEIIIKNNEGIFNKISTDTRKIE--KDNLFIALKGENFNGNDYAVAAIE 60
Query: 84 GKGCVGVIGNQVC----NNWDKG-FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ + VI +++ DKG ++V+ +T +L ++A + R + +VG+T
Sbjct: 61 KRASI-VIIDEIKFLPGELNDKGTIIKVD-----DTKTALGDLARFYR-KKIGIKVVGIT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK++TK ++A A S VF++ GN+NN +G+ L + + + DIAVLEMGMS G
Sbjct: 114 GSTGKTSTKDLVA-AFLSGKYRVFKTQGNFNNEIGLPLMIFELSKEYDIAVLEMGMSNFG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI +LA +A P+I + NVG +H+E L + E++ + K I + + ++N ++ ++
Sbjct: 173 EINKLASIALPDIAAITNVGVAHIEYLKTRENILKEKMSIVDFFEEKNSLIINCENDMLK 232
Query: 259 --NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
N + + K+ G+ + +V ++ + + ++ +F + G H
Sbjct: 233 LVNESDKYNLEKI--GYDKDYEVYAENIELTDKYTSFDAATKNGKKH-RFTLEMIGEHNV 289
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
+NA VA FG++ ++ L NF+ MR E + I+ND+YNANP S +AA
Sbjct: 290 LNALIGIQVARNFGLTFEEMEKGLENFNATSMRLE-FIKNDNFTIINDSYNANPDSMKAA 348
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESH 407
+++LK+ N K++ +LG M ELG +E+H
Sbjct: 349 LEVLKNYNGN-KKIAVLGTMGELGDYAKEAH 378
>gi|374621729|ref|ZP_09694259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Ectothiorhodospira sp. PHS-1]
gi|373940860|gb|EHQ51405.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Ectothiorhodospira sp. PHS-1]
Length = 460
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 198/375 (52%), Gaps = 45/375 (12%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + Q F A+ G FDAH+FI P+L G + + V D+ V V+
Sbjct: 27 VSTDSRGV--TAGQLFVALKGPRFDAHDFIVPQLPAAGLL--VSRDVGLQDDRPRVLVD- 81
Query: 109 NGNVNTLNSLVNMA------CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
+T +L ++A C AR +V +TGS GK+T K M+A L G +
Sbjct: 82 ----DTRRALADLATGWRRCCQAR-------IVALTGSNGKTTVKEMLAAILGHCG-QTW 129
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
+ GN NN +GV L+L+ + + V+EMG + GEI L +ARP++ ++ N G +HL
Sbjct: 130 ATRGNLNNDIGVPLTLLNLSESDRFGVIEMGANHAGEIALLTGIARPDVALITNAGPAHL 189
Query: 223 ESLGSLEDVARAKGEIFQESKLGD--VCVLNADDPLVAN-LTVPRGVRKVFFGWRRGCDV 279
E GS+E VA AKGEIFQ LGD V V+NADDP L++ G R + FG V
Sbjct: 190 EGFGSIEGVAHAKGEIFQ--GLGDEGVAVINADDPYADLWLSMNPGRRVILFGLSARAGV 247
Query: 280 RLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGI 338
R G + G +++ E ++ + G H +NA AAAA A G +
Sbjct: 248 R--------GEMDGEDLLIHLPEERIRVSLALAGRHNRLNALAAAAAALAMGADATAITR 299
Query: 339 SLSNFSPVQMRSELLVSR---SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395
LS+ PV R LVSR SG ++++D+YNANP STRAAI +L + G R+++LGD
Sbjct: 300 GLSSMQPVPGR---LVSRPGPSGSRLIDDSYNANPASTRAAIQVLSE--QPGHRILVLGD 354
Query: 396 MLELGSTERESHEKI 410
M ELG H ++
Sbjct: 355 MGELGEDAAGMHREM 369
>gi|374598623|ref|ZP_09671625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myroides odoratus DSM 2801]
gi|423323136|ref|ZP_17300978.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Myroides
odoratimimus CIP 103059]
gi|373910093|gb|EHQ41942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Myroides odoratus DSM 2801]
gi|404609868|gb|EKB09230.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Myroides
odoratimimus CIP 103059]
Length = 434
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 184/388 (47%), Gaps = 37/388 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN--QVCNNWDKGFVQV 106
I DTR + PN FFA+ G +FDA+EF + E KG VI + ++ + DK F+
Sbjct: 16 IAIDTRNITPNS--LFFALKGDNFDANEF-AQEALDKGARYVIMDNPKLVTDRDKMFLVP 72
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
N L +L +A Y R + ++ +TGS GK+TTK +I L S NV + G
Sbjct: 73 ------NALQALQQLANYHR-QQLGLPIIALTGSNGKTTTKELIKAVL-SRKYNVKATQG 124
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV L+L+ D DI ++EMG + EI L +A+P+ + N G +HLE G
Sbjct: 125 NYNNHIGVPLTLLQFDDETDIGIVEMGANHLNEIALLCTIAQPDYGYITNFGKAHLEGFG 184
Query: 227 SLEDVARAKGEIFQESKLGD---VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVA 283
E V + K E++ L D + +NADDP T+ + FG +
Sbjct: 185 GFEGVIKGKSELY--DYLEDNHKMAFVNADDPRQDAKTIT--FSRYTFGSKE-------- 232
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHL-----AINACAAAAVATLFGVSLAQVGI 338
L V+++ E ++ HL A N AA A+ FGVSL +
Sbjct: 233 ---TEANLEVEIIEHTELATIQLGEKRITSHLTGQYNATNMAAAVAIGQYFGVSLEEANQ 289
Query: 339 SLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLE 398
++ + P RS+ + + I+ DAYNANP S ++ + ++ ILGDM E
Sbjct: 290 AIQAYIPTNNRSQ-WIKQEPFTILLDAYNANPSSMELSVANFNQLPSTSPKIYILGDMFE 348
Query: 399 LGSTERESHEKILSYCCDACIDLIGLVG 426
LG+ + H+ I+ D + +G
Sbjct: 349 LGTASEKEHKNIIQQVEDTTFEKAFFIG 376
>gi|153006718|ref|YP_001381043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Anaeromyxobacter sp. Fw109-5]
gi|152030291|gb|ABS28059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Anaeromyxobacter sp. Fw109-5]
Length = 460
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 141/407 (34%), Positives = 209/407 (51%), Gaps = 14/407 (3%)
Query: 25 PIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
P ++ +E+A + G+ + P + + TDTR + P F A+ G+ FD H ++
Sbjct: 4 PRFSPDELAAATGGRWMGAPPAELAGVSTDTRTIVPGA--LFVALRGERFDGHAYLGEAS 61
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
V+ + + V +TL +L +A + R RF +VGVTGS G
Sbjct: 62 AKGAAAAVVAHGAAAGAPLPVLAVP-----DTLAALGAIARHHRR-RFHIPVVGVTGSNG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TT+ MIA L + G V ++ GN NN VGV L+L+G+ AV+EMGM+ GEI
Sbjct: 116 KTTTREMIAGILATRG-PVLKTEGNLNNEVGVPLTLLGLGPEHRSAVIEMGMNHPGEIAR 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
LA +A P + VV +HLE LG+++ VA AK E++Q + + V NADDP +
Sbjct: 175 LAAIAEPYVGVVTLAAAAHLEGLGTVDAVADAKAELYQGLQDTGIVVANADDPRMLKRAQ 234
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQV-ANGGLGVQVVLEKEREMVKFVIPS-PGLHLAINAC 320
G R + F G +V ++ + G G+ VL V IP G H A+NA
Sbjct: 235 AAGKRMLTFAAGAGRRGDVVVLEIGSQGDDGLHFVLGVGNREVPVHIPGLVGAHNAVNAA 294
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AAAA A G S ++ L+ PV R L SG+++V+D YNANP S AA+ L
Sbjct: 295 AAAAAAISLGCSDREIAQGLAAVRPVGRRLRLERLASGLRLVDDCYNANPASMSAALRTL 354
Query: 381 KDIA-CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
D+A + + V +LGDMLELG+ E +H ++ A + L+ G
Sbjct: 355 VDLARPDARAVAVLGDMLELGAFEEPAHRELGGEAARAGVRLLAAFG 401
>gi|383482435|ref|YP_005391349.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia montanensis str. OSU 85-930]
gi|75487918|sp|Q9AKP1.1|MURF_RICMO RecName: Full=Probable
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
AltName: Full=UDP-MurNAc-pentapeptide synthetase
gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
6-diaminopimelate--D-alanyl ligase [Rickettsia
montanensis]
gi|378934789|gb|AFC73290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia montanensis str. OSU 85-930]
Length = 449
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 189/376 (50%), Gaps = 26/376 (6%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I QV N + V+ + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKQVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
MA Y R + + +V +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSKAKFIV-ITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINLA 145
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EIF
Sbjct: 146 SMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIF 205
Query: 240 QESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
D+ V+NAD ++ NL++ FG L+ + LG
Sbjct: 206 ANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSSKTSAELILYE----NLG 258
Query: 293 VQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS 350
QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 259 EQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRG 318
Query: 351 ELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK+
Sbjct: 319 E-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEKL 376
Query: 411 LSYCCDACIDLIGLVG 426
+ Y DA + LVG
Sbjct: 377 VQYILDAACSKVYLVG 392
>gi|429746753|ref|ZP_19280085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 380 str. F0488]
gi|429165327|gb|EKY07386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 380 str. F0488]
Length = 444
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 194/395 (49%), Gaps = 35/395 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + + DK + V+
Sbjct: 15 VSTDTRNITPNS--IYFALKGASFNGNTFAQEALTKGACYAVIDDPAYHIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA+LEMG + GEI L + P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAILEMGANHPGEIAFLCSITEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVF-FGWRRGCDVRL----- 281
E V + KGE++ K ++ NAD+P+ L V+ FG G +V +
Sbjct: 185 EGVIKTKGELYDYLKTHHKTIIANADNPITEALL--ENYNNVYSFGVGEGVNVSVQCLST 242
Query: 282 --VAAQVANGGLGVQVVLEKEREMVKFVIPSPGL---HLA-----INACAAAAVATLFGV 331
V Q A+ L Q E ++ +P + HL N A+ A F +
Sbjct: 243 QPVKIQFADSSL--QTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASVAFGRYFKL 300
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
S + + ++ P RS+LL S ++ DAYNANP S AAID L + + +V+
Sbjct: 301 STKAIQKGIESYIPQNNRSQLLQWGSNTVLL-DAYNANPSSMTAAIDNLLSMNSSPNKVL 359
Query: 392 ILGDMLELGSTERESHEKILSYCCD---ACIDLIG 423
ILGDM ELG + H+ I+ + A + LIG
Sbjct: 360 ILGDMFELGDYATQEHQSIVDKLTEHQWAEVYLIG 394
>gi|425006605|ref|ZP_18417775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV1]
gi|425013770|ref|ZP_18424486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E417]
gi|402996953|gb|EJY11309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium ERV1]
gi|403000334|gb|EJY14461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E417]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 195/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 4 TIQEIAQAVGSECSALTKITNVEFDSRKIT--EGSLFVPLAGTR-DGHEFIQQ------- 53
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q N V + L ++ +A Y + +V +TGS GK
Sbjct: 54 -AITNGASASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 112 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A AK EI + V+ AD+PL+ LT
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIANAKMEITDGLVSDGLLVVPADEPLLTPLTAT 230
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 231 LVQTVTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 283
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 284 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 343
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 344 PTKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|359791237|ref|ZP_09294101.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Mesorhizobium alhagi CCNWXJ12-2]
gi|359252753|gb|EHK55962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Mesorhizobium alhagi CCNWXJ12-2]
Length = 477
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 204/413 (49%), Gaps = 25/413 (6%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT + + ++ G+ L P G+ I D+R L P + FFAI G+ D H+F +
Sbjct: 2 SYLWTSDALVAAMGGRPLGQMPEGVSGISIDSRSLKPG--EAFFAIKGEAMDGHDFATAA 59
Query: 82 LY-GKGCVGVIGNQV--CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ G G + V ++ + V + L +L AR +R ++ VT
Sbjct: 60 VKAGAGLLVVAEGKLPALGRLTAPMIVVP-----DVLAALEKAGVAAR-TRTQAKIIAVT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK + L S+G V S ++NN GV L+L + D AV E+GM+ G
Sbjct: 114 GSVGKTTTKEALRHVLSSVG-KVHASDKSFNNHWGVPLTLARMPEDCDYAVFEIGMNHPG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---P 255
EI L ++ RP + +V + +HL +L+++ARAK EIF+ + ++N DD
Sbjct: 173 EIRPLVKLVRPHVAIVTLIAPAHLGHFKNLDEIARAKAEIFEGIEPDGYALINRDDQRWK 232
Query: 256 LVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L+ L GV + FG +L+ ++ + V + + M + I +PG H
Sbjct: 233 LLEKLARDAGVAHIVGFGENARAHFKLMRHELFADRSTIAVKIGGKETMAE--IGAPGRH 290
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE---LLVSRSGIKIVNDAYNANPI 371
+ NA A A L G + +V +L + + R + L +++++YNANP+
Sbjct: 291 IVQNALAVLGAARLVGADMGKVAAALGSLTAESGRGKRHTLQHPDGPFALIDESYNANPV 350
Query: 372 STRAAIDLL--KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
S +AAIDLL + G+RV +LGDMLELGS + H + A +DL+
Sbjct: 351 SMKAAIDLLAATPVTGEGRRVAVLGDMLELGSHSAKLHAALADMIAGAGVDLV 403
>gi|417885277|ref|ZP_12529432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus oris F0423]
gi|341595932|gb|EGS38569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus oris F0423]
Length = 459
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 209/414 (50%), Gaps = 21/414 (5%)
Query: 31 EIAESVNGK--ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EIA+++N + I +W + + D+R L K F + G H D H+++ + G
Sbjct: 7 EIAKAINAQNEIEQWKDIEVTSVSFDSRHL--EKGALFVPLQGAH-DGHQYVETA-FTNG 62
Query: 87 CVGVI--GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ + N D + V + L +L + Y + + ++V VTGS GK+
Sbjct: 63 AAATLWASDHELTNSDHPVLVV-----TDPLKALQELGKYYLR-KINPIVVAVTGSNGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK MIA L S +NV ++Y N+NN +GV ++L+ ++ ++ V+EMGM G++ L+
Sbjct: 117 TTKDMIASIL-STQLNVTKTYANFNNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLS 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++ P+I V+ +G++H+E G+ + +A AK EI K + V + D+PL+
Sbjct: 176 KLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKEDGLFVYDGDEPLLNERAANI 235
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
+ FG + D L A V G ++ + E +F IP G + NA AA A
Sbjct: 236 TQQTTRFGRQLTDD--LYATSVNAGSRSIEFKV-NEWPDEQFTIPMVGEYNVNNALAAMA 292
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
VA +S + +L+N + R+E S++G +I++D YN+NP + + + L ++
Sbjct: 293 VAKRLHISPNHIKTALANVELTENRAEWFKSKNGAQILSDVYNSNPTAAKQVLKTLAEMP 352
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG-DRVVVQCKWRK 437
G+R+ +LGDMLELG H + A I + LVG + +Q K ++
Sbjct: 353 VQGRRIAVLGDMLELGEAAPRLHASLAEQINPAQIQEVYLVGAEMAYLQAKLQE 406
>gi|431749301|ref|ZP_19538043.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2297]
gi|430611729|gb|ELB48805.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2297]
Length = 470
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 195/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 24 TIQEIAQAVGSECSALTKITNVEFDSRKIT--EGSLFVPLAGTR-DGHEFIQQ------- 73
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q N V + L ++ +A Y + +V +TGS GK
Sbjct: 74 -AITNGASASFWSLPVEQAPKNFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 131
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI E
Sbjct: 132 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEF 190
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 191 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPLTAT 250
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 251 LVQTVTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 303
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 304 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 363
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 364 PTKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQM 409
>gi|430836493|ref|ZP_19454472.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0680]
gi|431380395|ref|ZP_19510776.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1627]
gi|431506775|ref|ZP_19515601.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1634]
gi|430488293|gb|ELA64975.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0680]
gi|430582263|gb|ELB20690.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1627]
gi|430587162|gb|ELB25395.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1634]
Length = 470
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 196/402 (48%), Gaps = 16/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI + G
Sbjct: 24 TIQEIAQAVGSECSALTKITNVEFDSRKI--TEGSLFVPLAGTR-DGHEFIQ-QAITNGA 79
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
+ K F + + L ++ +A Y + +V +TGS GK+TTK
Sbjct: 80 SASFWSLPVEQAPKDFPVIP---VADPLKAMQQLATYYL-EKVGAEVVAITGSNGKTTTK 135
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
+ A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL+ MA
Sbjct: 136 DLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMA 194
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 195 QPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATLVQT 254
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVAT 327
FG G DV A A G V+E E F IP PG + NA A +
Sbjct: 255 VTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAYTIGR 307
Query: 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNG 387
FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++ G
Sbjct: 308 FFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKG 367
Query: 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 368 RRIAVLADMLELGKDSLSMHAQMSEHIDPEKFAMIFLYGEQM 409
>gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Alkaliphilus metalliredigens QYMF]
gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Alkaliphilus metalliredigens QYMF]
Length = 457
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 216/411 (52%), Gaps = 30/411 (7%)
Query: 29 INEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+NEI E V G LK I + DTR + Q + I G+ F+ HEFI + G
Sbjct: 6 LNEIQEMVKGSGLKKSHEDIWINGVSIDTRTIKDT--QLYIPIIGEKFNGHEFIEKAM-G 62
Query: 85 KGCVGVI--GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G + NQ N D F+ VE +TL+++ +A RN + + ++G+TGS G
Sbjct: 63 NGATATLWDKNQPIPNIDFPFILVE-----DTLDAIQTLAKAYRN-QLNVKIIGITGSNG 116
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK ++ L+++ ++ GN NN +GV L+L+ + +IAV+EMGMSG GEI
Sbjct: 117 KTSTKDILFNILQTV-YKTHKTLGNLNNHLGVPLTLLEMAENTEIAVIEMGMSGLGEIEL 175
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL----VA 258
L+++A ++ ++ N + H+ LGS+E++ +AK EI + K + + D P V
Sbjct: 176 LSKIASSDVAIITNSTNVHINDLGSVENILKAKLEIIEGLKPHGLFIYFGDSPPLRVGVE 235
Query: 259 NLTVPRGVRKVFFGWRRGCD--VRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L + + +KV FG R D V+L++++ N G+ ++V + + + G H
Sbjct: 236 KLDLKQ--KKVTFGINRDNDYTVKLISSE--NEGIYFELV---GSDSPRLFLSMLGNHQI 288
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
NA AA AVA F ++L ++ + MR+E L+ +G I+ND+Y +NPIS R+
Sbjct: 289 YNAAAAIAVAQYFNITLEKIQEGMLKIEATGMRNE-LIKCNGFDILNDSYKSNPISLRSV 347
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+D + +++V+LGDM G E +H I + ID + +G+
Sbjct: 348 LDTMYSFKKYKQKIVVLGDMFGTGENEITTHIDIGEEIDPSQIDYVFTIGE 398
>gi|430823395|ref|ZP_19441966.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0120]
gi|430866427|ref|ZP_19481704.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1574]
gi|431744089|ref|ZP_19532961.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2071]
gi|430442108|gb|ELA52156.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0120]
gi|430551655|gb|ELA91406.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1574]
gi|430605717|gb|ELB43099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2071]
Length = 470
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 196/402 (48%), Gaps = 16/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI + G
Sbjct: 24 TIQEIAQAVGSECSALTKITNVEFDSRKI--TEGSLFVPLAGTR-DGHEFIQ-QAITNGA 79
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
+ K F + + L ++ +A Y + +V +TGS GK+TTK
Sbjct: 80 SASFWSLPVEQAPKDFPVIP---VADPLKAMQQLATYYL-EKVGAEVVAITGSNGKTTTK 135
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
+ A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL+ MA
Sbjct: 136 DLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMA 194
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 195 QPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATLVQT 254
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVAT 327
FG G DV A A G V+E E F IP PG + NA A +
Sbjct: 255 VTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAYTIGR 307
Query: 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNG 387
FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++ G
Sbjct: 308 FFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKG 367
Query: 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 368 RRIAVLADMLELGKDSLSMHAQMSEHIDPEKFAMIFLYGEQM 409
>gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodobacterales bacterium HTCC2255]
gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
proteobacterium HTCC2255]
Length = 462
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/409 (30%), Positives = 211/409 (51%), Gaps = 21/409 (5%)
Query: 26 IWTINEIAESVNG-KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+W+ + ++ +G + W GI DTR L F A+ Q D HE+I +
Sbjct: 3 LWSSKDAVKATSGVSRINWVANGI-SIDTRTL--KMGDLFVALKDQR-DGHEYIKIA-FE 57
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
G + ++V + D+ + + + L++L +MA +AR+ R ++G+TGSVGK+
Sbjct: 58 NGAAAALVSRVPDGLDENLPLLIVD---DVLSALESMAEFARD-RTQAKVIGITGSVGKT 113
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+TK M+ L + G + ++NN GV L+L + + D AV+E+GM+ EI LA
Sbjct: 114 STKEMLKSILIANG-KTHAAERSYNNHWGVPLTLARMPKETDFAVIEIGMNNPDEIRPLA 172
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD----DPLVANL 260
++A+ ++ +VLNV HL++ ++E +A AK EIF+ ++ ++N+D D L+ +
Sbjct: 173 KLAKLDVAIVLNVAPVHLKAFKNIEGIAYAKAEIFENLSSSNIAIVNSDLSTFDILLNTV 232
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
R + + FG D +L+++ + G V + F + G H AINA
Sbjct: 233 QKVRS-KLITFGHTDAADYKLISS--SRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAM 289
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPISTRAAI 377
+ A A G+ +G + SN+ RS + + I++++++YNANPIS AAI
Sbjct: 290 SVFAAAEAVGIERKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAI 349
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
++L +G++V ILGDM ELG E H + ID++ LVG
Sbjct: 350 NVLSQSEASGRKVAILGDMGELGENEMLFHSNLAKIQSIKAIDILYLVG 398
>gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena variabilis ATCC 29413]
gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena variabilis ATCC 29413]
Length = 451
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 194/365 (53%), Gaps = 28/365 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF--VQV 106
I TDTRI+ P + F A G+ FD HEF+ + ++ + N GF +QV
Sbjct: 33 IQTDTRIIKPG--EVFLAFRGEKFDGHEFVQTAIANGAIAAIVDDDYEN---PGFPVLQV 87
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
NTL + + + R+ RF ++GVTGSVGK+TTK +IA L + G N+ ++YG
Sbjct: 88 S-----NTLEAYQKLGRWWRD-RFDIPVIGVTGSVGKTTTKELIAAVLGTKG-NIHKTYG 140
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV +L+ ++ D AV+EM M G+G+I EL ++A P I V+ NVG +H+E LG
Sbjct: 141 NFNNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAELTQIANPTIGVITNVGTAHIELLG 200
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
S E +A AK E+ E V +LN D+PL+ +V G D++
Sbjct: 201 SEEAIAEAKCELLAEMPKDSVAILNHDNPLLMATAGKFWSGEVLTYGLSGGDIQ------ 254
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G L ++E ++ +P PG H A N AA AVA + G+ + + +S P
Sbjct: 255 --GSLVDNAIVEVAG--LRLPLPLPGRHNATNYLAALAVAKVLGIEWSSLQAGVSVNMPT 310
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTERE 405
RS+ + + I+++ YNA P + AA+ LL D GKR + +LG M ELG +
Sbjct: 311 G-RSQRFSLPNDVLILDETYNAAPEAMLAALQLLAD--TPGKRKIAVLGAMKELGERSAQ 367
Query: 406 SHEKI 410
H+++
Sbjct: 368 LHQRV 372
>gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Treponema
succinifaciens DSM 2489]
gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Treponema
succinifaciens DSM 2489]
Length = 477
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/434 (29%), Positives = 215/434 (49%), Gaps = 34/434 (7%)
Query: 23 NSPIWTINEIAESVNG-KILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
N + ++ EI E+VNG +L P I + TD+R++ KN F + G++ D H ++
Sbjct: 4 NDSLLSLEEILEAVNGVHVLGNSPLCIKSVQTDSRLV--EKNTLFVPLIGENQDGHSYVP 61
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQV-EGNGNV------NTLNSLVNMACYARNSRFSG 132
+ V I + N FV++ E N +V NTL +L A
Sbjct: 62 QAIEKGASVVFISMKNFENNGNYFVELHEKNPSVIFIAVENTLEALQKSAARYVEKFPHL 121
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
+ +GVTGS GK+TTK ++ +++ S V + GN N+ G+ LS+ I + V EM
Sbjct: 122 IKIGVTGSSGKTTTKEIL-VSILSQKYKVISNKGNLNSETGLPLSVFNIRAEHECGVFEM 180
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GM+ + EI E+A + +P VV N+G +H+ LGS E++A+ K +IF V+
Sbjct: 181 GMNRENEIGEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIFSYFGGFGTGVIPV 240
Query: 253 DDPLVANLTVPRGVRKVFFG-----WRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFV 307
DD L + VF+G + CD+ L + + G ++ +
Sbjct: 241 DDEFSDFLKNEIDGKVVFYGNDTDSVKYICDMGLKGTKFSIDG-------------IETI 287
Query: 308 IPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367
+P PG + +A A A+A + G+S Q+ +S+ P+ RSE+L ++ + I+ D YN
Sbjct: 288 LPLPGKYNYKDALGAIALAQVLGLSSRQISDGISSLKPLSGRSEILDGKNFL-IMQDCYN 346
Query: 368 ANPISTRAAIDLLKDIA--CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425
ANP S AI+ + + + K++ +LGDMLELGS + +HEK ++ +DL+ +
Sbjct: 347 ANPDSMEKAIEFIGSVKKEADAKKIFVLGDMLELGSDSKSAHEKTGLLAVNSDVDLVIFI 406
Query: 426 GDRVVVQCKWRKWS 439
G + K K S
Sbjct: 407 GTEMKAAFKKAKNS 420
>gi|428207636|ref|YP_007091989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chroococcidiopsis thermalis PCC 7203]
gi|428009557|gb|AFY88120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chroococcidiopsis thermalis PCC 7203]
Length = 452
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 195/369 (52%), Gaps = 37/369 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L P F A+ G+ FD H F++ + KG + I + D +QV
Sbjct: 33 INTDTRSLKPG--DIFVALRGEKFDGHGFVATAVE-KGAIAAIVDGHYQG-DLPVLQVR- 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + +A + R S+F ++GVTGSVGK+TTK +IA L + G NV +++ N+
Sbjct: 88 ----DTLQAYQQIASWWR-SQFHMPVIGVTGSVGKTTTKELIAAVLGTQG-NVLKTHANF 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+G+D D AV+EM M G+GEI L ++ARP I V+ NVG +H+E LGS
Sbjct: 142 NNEIGVPKTLLGLDTQHDFAVIEMAMRGRGEIALLTQIARPTIGVITNVGTAHIERLGSE 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADD-PLVANLTVPRGVRKVFFGWRRGCDVR--LVAAQ 285
E +A+AK E+ E V +LN D+ L++ + + +G G D+R L+ +Q
Sbjct: 202 EAIAQAKCELLAEMPQNSVAILNYDNFRLISTANTVWQGKTITYGL-EGGDIRGELLDSQ 260
Query: 286 VAN-GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGV--SLAQVGISLSN 342
GL + +P PG H A+N AA AVA + + S+ + G+++
Sbjct: 261 TLKVAGL-------------ELPLPLPGRHNAVNFLAALAVAKVLQIDWSVLKTGLTVDM 307
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGS 401
S R EL + I++++YNA P L GKR + +LG M ELG
Sbjct: 308 PSGRSQRYELA---DDVVILDESYNAAP--EAMLAALQLLAQTPGKRHIAVLGAMKELGE 362
Query: 402 TERESHEKI 410
RE H+K+
Sbjct: 363 RSRELHQKV 371
>gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella sp. NF 2653]
gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella sp. NF 2653]
Length = 481
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 205/436 (47%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHIV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E1039]
gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E1071]
gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E1636]
gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E1679]
gi|406579293|ref|ZP_11054525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus sp. GMD4E]
gi|406581589|ref|ZP_11056726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus sp. GMD3E]
gi|406584028|ref|ZP_11059066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus sp. GMD2E]
gi|406589824|ref|ZP_11064244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus sp. GMD1E]
gi|410938071|ref|ZP_11369929.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus sp. GMD5E]
gi|427397058|ref|ZP_18889684.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus durans FB129-CNAB-4]
gi|430820899|ref|ZP_19439519.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0045]
gi|430826318|ref|ZP_19444504.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0164]
gi|430828898|ref|ZP_19447009.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0269]
gi|430834758|ref|ZP_19452760.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0679]
gi|430839411|ref|ZP_19457352.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0688]
gi|430843174|ref|ZP_19461075.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1050]
gi|430850820|ref|ZP_19468577.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1185]
gi|430858895|ref|ZP_19476514.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1552]
gi|430861434|ref|ZP_19478941.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1573]
gi|430892937|ref|ZP_19484558.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1575]
gi|430952631|ref|ZP_19486437.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1576]
gi|431000765|ref|ZP_19488246.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1578]
gi|431208677|ref|ZP_19500890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1620]
gi|431234138|ref|ZP_19502907.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1622]
gi|431256500|ref|ZP_19504855.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1623]
gi|431303425|ref|ZP_19508272.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1626]
gi|431441110|ref|ZP_19513325.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1630]
gi|431725206|ref|ZP_19525415.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1904]
gi|431747115|ref|ZP_19535917.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2134]
gi|431760195|ref|ZP_19548797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E3346]
gi|431765026|ref|ZP_19553550.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E4215]
gi|447911697|ref|YP_007393109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
diaminopimelate--D-alanyl-D-alanine ligase [Enterococcus
faecium NRRL B-2354]
gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E1071]
gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E1636]
gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E1679]
gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E1039]
gi|404455598|gb|EKA02442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus sp. GMD4E]
gi|404459355|gb|EKA05721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus sp. GMD3E]
gi|404464925|gb|EKA10438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus sp. GMD2E]
gi|404470264|gb|EKA14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Enterococcus sp. GMD1E]
gi|410733710|gb|EKQ75633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus sp. GMD5E]
gi|425722384|gb|EKU85279.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus durans FB129-CNAB-4]
gi|430439036|gb|ELA49419.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0045]
gi|430445198|gb|ELA54972.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0164]
gi|430482560|gb|ELA59675.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0269]
gi|430484827|gb|ELA61774.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0679]
gi|430490869|gb|ELA67365.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E0688]
gi|430497923|gb|ELA73940.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1050]
gi|430535179|gb|ELA75602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1185]
gi|430544741|gb|ELA84763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1552]
gi|430549899|gb|ELA89709.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1573]
gi|430555403|gb|ELA94941.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1575]
gi|430557230|gb|ELA96698.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1576]
gi|430562424|gb|ELB01656.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1578]
gi|430570683|gb|ELB09623.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1620]
gi|430573164|gb|ELB11994.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1622]
gi|430577602|gb|ELB16189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1623]
gi|430580066|gb|ELB18546.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1626]
gi|430586466|gb|ELB24718.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1630]
gi|430595853|gb|ELB33731.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1904]
gi|430607223|gb|ELB44550.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2134]
gi|430624004|gb|ELB60655.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E3346]
gi|430629509|gb|ELB65909.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E4215]
gi|445187406|gb|AGE29048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
diaminopimelate--D-alanyl-D-alanine ligase [Enterococcus
faecium NRRL B-2354]
Length = 470
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 196/402 (48%), Gaps = 16/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI + G
Sbjct: 24 TIQEIAQAVGSECSALTKITNVEFDSRKI--TEGSLFVPLAGTR-DGHEFIQ-QAITNGA 79
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
+ K F + + L ++ +A Y + +V +TGS GK+TTK
Sbjct: 80 SASFWSLPVEQAPKDFPVIP---VADPLKAMQQLATYYL-EKVGAEVVAITGSNGKTTTK 135
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
+ A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL+ MA
Sbjct: 136 DLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMA 194
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 195 QPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATLVQT 254
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVAT 327
FG G DV A A G V+E E F IP PG + NA A +
Sbjct: 255 VTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAYTIGR 307
Query: 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNG 387
FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++ G
Sbjct: 308 FFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKG 367
Query: 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 368 RRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQM 409
>gi|426405104|ref|YP_007024075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Bdellovibrio bacteriovorus str. Tiberius]
gi|425861772|gb|AFY02808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Bdellovibrio bacteriovorus str. Tiberius]
Length = 473
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 206/414 (49%), Gaps = 15/414 (3%)
Query: 29 INEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
+ IA+ KIL I TDTR A + Q F A+ G+ FDAH F+ + G
Sbjct: 6 LQTIAKVTGAKILSQKETNFAGIGTDTR--AQLQGQLFIALKGEAFDAHNFLEKAVE-SG 62
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTT 146
++ ++ +K +V +TL SL + +AR+ S +VG+TGS GK+TT
Sbjct: 63 AAALMVHEENAQTEKLKDKVTILLVPDTLKSLQKLGNWARHES-SARIVGITGSNGKTTT 121
Query: 147 KSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM 206
K A AL ++V + G++NN GV +L+ + D+A++EMGM+ GEI EL +
Sbjct: 122 KEFTA-ALVGSAMDVHYNKGSFNNHWGVPFTLLQLPPKKDVAIIEMGMNHAGEITELVHI 180
Query: 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV---- 262
A P++ V VG +H+E G++E VA AK EI++ + V + N D+ N+ V
Sbjct: 181 AEPDVVVCTMVGRAHMEFFGTIEKVAEAKEEIYEAAGDQTVRIYNLDNTQTHNMYVKARE 240
Query: 263 --PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
P+ F DV L+ + + + ++ + E + + G N
Sbjct: 241 KFPKARILTFSSEDPRADVHLMISSMNMSEISIKGSIGGEAGTARVQV--FGAQNLTNLM 298
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AAA+V G++ AQV L R++L+ +SG +++ DAYNANP S +A ID +
Sbjct: 299 AAASVGLAVGMTPAQVWAGLPACKTNWGRNQLVHLKSGAQMIFDAYNANPDSMKALIDNM 358
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCK 434
K + G++V + G M ELGS HE++ ++ A D + +GD K
Sbjct: 359 KLLTVPGRKVGVFGQMRELGSASANLHEELGTWVGQAGFDKVYFIGDDAAAFAK 412
>gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
C68]
gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
6]
gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
gi|424789109|ref|ZP_18215818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium V689]
gi|424869803|ref|ZP_18293484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R497]
gi|424953766|ref|ZP_18368709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R494]
gi|424962399|ref|ZP_18376755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1986]
gi|424963600|ref|ZP_18377804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1190]
gi|424970724|ref|ZP_18384212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1139]
gi|424978088|ref|ZP_18391037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1123]
gi|425038207|ref|ZP_18442829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 513]
gi|425058608|ref|ZP_18461986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 504]
gi|425060637|ref|ZP_18463923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 503]
gi|430853176|ref|ZP_19470906.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1258]
gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
C68]
gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
6]
gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
gi|402922577|gb|EJX42942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium V689]
gi|402935189|gb|EJX54459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R497]
gi|402938305|gb|EJX57321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium R494]
gi|402940681|gb|EJX59476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1986]
gi|402948695|gb|EJX66810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1190]
gi|402960764|gb|EJX77865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1139]
gi|402963119|gb|EJX80011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium P1123]
gi|403019903|gb|EJY32477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 513]
gi|403038012|gb|EJY49252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 504]
gi|403042419|gb|EJY53374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 503]
gi|430540998|gb|ELA81175.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1258]
Length = 450
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 196/402 (48%), Gaps = 16/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI + G
Sbjct: 4 TIQEIAQAVGSECSALTKITNVEFDSRKI--TEGSLFVPLAGTR-DGHEFIQ-QAITNGA 59
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
+ K F + + L ++ +A Y + +V +TGS GK+TTK
Sbjct: 60 SASFWSLPVEQAPKDFPVIP---VADPLKAMQQLATYYL-EKVGAEVVAITGSNGKTTTK 115
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
+ A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL+ MA
Sbjct: 116 DLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMA 174
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 175 QPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATLVQT 234
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVAT 327
FG G DV A A G V+E E F IP PG + NA A +
Sbjct: 235 VTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAYTIGR 287
Query: 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNG 387
FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++ G
Sbjct: 288 FFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKG 347
Query: 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 348 RRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Alkaliphilus metalliredigens QYMF]
gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Alkaliphilus metalliredigens QYMF]
Length = 463
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 128/383 (33%), Positives = 201/383 (52%), Gaps = 17/383 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI---GNQVCNNWDKGFVQ 105
I TDTR + + F + G FD H+FI + +G +G + G + F
Sbjct: 29 ISTDTRKM--KEESLFVPLIGAFFDGHQFILQAM-ERGAIGALVQKGQEFPLGKLNDFYV 85
Query: 106 VEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+E +TL +L + Y +NS +GVTGS GK+TTK MIA LE+ NV ++
Sbjct: 86 IEVE---DTLQALKEIGRHYRQNSNIP--FIGVTGSTGKTTTKDMIAGILET-NFNVLKN 139
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN NN++G+ L+L ++ +I VLEMGM+ GEIL LA+ +P I V+ NVG SH+E
Sbjct: 140 EGNLNNQIGLPLTLFNLEPCHEIGVLEMGMNSLGEILSLAKTVQPHIAVITNVGFSHIEH 199
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVA 283
LGS E++ AK EI + D ++N DDP + + + R + FG D+
Sbjct: 200 LGSQENILTAKMEITTRLREKDYLLINGDDPFLKTVKEESKTYRIITFGIDPSNDI-YAE 258
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
V G +G + + +++ F + PG+H N A V + ++ +
Sbjct: 259 NLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLVALWVGLHYQMTPLAIQKGFDRL 318
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
+MR E +V+ +K++NDAYNA+P S +AAI +L + +++ ILGD+LE+GS
Sbjct: 319 ELSKMRLE-IVTYGDVKVINDAYNASPDSMKAAITVLNQ-STGIRKIAILGDILEMGSFA 376
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
E H +I S+ + +D + VG
Sbjct: 377 EEGHRRIGSFIATSPVDYLITVG 399
>gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
saanensis SP1PR4]
gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
saanensis SP1PR4]
Length = 471
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 188/366 (51%), Gaps = 20/366 (5%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ--VCNNWDKGFVQVEGN 109
D+R + + FFA+ G+ FD HEF+ L V+ + V D + +
Sbjct: 30 DSRTVGAG--ELFFAVMGERFDGHEFVKTALEAGAVAAVVSMRWVVSAEVDPCKLLRVPD 87
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
G L++L +A R S + G ++GVTGS GK+TTK +A L + V +S GN N
Sbjct: 88 GEDCVLSALQKLAREVRKS-WGGRVIGVTGSAGKTTTKECVAAVL-AAKFKVLKSAGNLN 145
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS-L 228
N GV L L+ +++ +AV+EMGM+ GEI LA++A P+ VV NV HLE +
Sbjct: 146 NHFGVPLQLLRLEKEHQVAVIEMGMNHAGEIATLAKIAEPDWAVVSNVAAVHLEFFADGM 205
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E +ARAK E+ V LNADD V+ T G FG DVR V +V N
Sbjct: 206 EGIARAKKELVDALPAAGVAFLNADDVFVS--TFGEGHEARMFGLSETADVRGV--EVKN 261
Query: 289 GGL-GVQVVLE------KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
GL G+Q V++ + + ++ I G H NA AA AV G++L + +L
Sbjct: 262 VGLEGMQFVVQVTAREGRVADKMRARIALLGEHNVYNALAAIAVGLESGMTLGECVFALD 321
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
+ P R E ++ G +++ND+YN+NP + A +D L I G+ +VI G+MLELG
Sbjct: 322 SVVPSDKRGE-MIEWHGARLINDSYNSNPRALEAMVDALMAIE-GGRHIVIAGEMLELGQ 379
Query: 402 TERESH 407
+ H
Sbjct: 380 DAGKLH 385
>gi|430842365|ref|ZP_19460280.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1007]
gi|431081589|ref|ZP_19495679.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1604]
gi|431118219|ref|ZP_19498173.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1613]
gi|431738950|ref|ZP_19527890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1972]
gi|431740771|ref|ZP_19529682.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2039]
gi|430493446|gb|ELA69749.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1007]
gi|430565521|gb|ELB04667.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1604]
gi|430568176|gb|ELB07233.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1613]
gi|430596493|gb|ELB34317.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E1972]
gi|430602854|gb|ELB40404.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Enterococcus faecium E2039]
Length = 470
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 196/402 (48%), Gaps = 16/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI + G
Sbjct: 24 TIQEIAQAVGSECSALTKITNVEFDSRKIT--EGSLFVPLVGTR-DGHEFIQ-QAITNGA 79
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
+ K F + + L ++ +A Y + +V +TGS GK+TTK
Sbjct: 80 SASFWSLPVEQAPKDFPVIP---VADPLKAMQQLATYYL-EKVGAEVVAITGSNGKTTTK 135
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
+ A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL+ MA
Sbjct: 136 DLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMA 194
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 195 QPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATLVQT 254
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVAT 327
FG G DV A A G V+E E F IP PG + NA A +
Sbjct: 255 VTTFGIGNG-DVH--AEVTAEGKAQTDFVVEGET----FTIPLPGSYNVTNALIAYTIGR 307
Query: 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNG 387
FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++ G
Sbjct: 308 FFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKG 367
Query: 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 368 RRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQM 409
>gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella neotomae 5K33]
gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella neotomae 5K33]
Length = 481
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 205/436 (47%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E980]
gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium E980]
Length = 450
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 196/402 (48%), Gaps = 16/402 (3%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI + G
Sbjct: 4 TIQEIAQAVGSECSALTKITNVEFDSRKIT--EGSLFVPLVGTR-DGHEFIQ-QAITNGA 59
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
+ K F + + L ++ +A Y + +V +TGS GK+TTK
Sbjct: 60 SASFWSLPVEQAPKDFPVIPV---ADPLKAMQQLATYYL-EKVGAEVVAITGSNGKTTTK 115
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
+ A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL+ MA
Sbjct: 116 DLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSLMA 174
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 175 QPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTATLVQT 234
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVAT 327
FG G DV A A G V+E E F IP PG + NA A +
Sbjct: 235 VTTFGIGNG-DVH--AEVTAEGKAQTDFVVEGET----FTIPLPGSYNVTNALIAYTIGR 287
Query: 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNG 387
FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++ G
Sbjct: 288 FFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNLPTKG 347
Query: 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 348 RRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus oris PB013-T2-3]
gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus oris PB013-T2-3]
Length = 459
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 209/414 (50%), Gaps = 21/414 (5%)
Query: 31 EIAESVNGK--ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EIA+++N + I +W + + D+R L K F + G H D H+++ + G
Sbjct: 7 EIAKAINAQNEIEQWKDIEVTSVSFDSRHL--EKGALFVPLQGAH-DGHQYVETA-FTNG 62
Query: 87 CVGVI--GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ + N D + V + L +L + Y + + ++V VTGS GK+
Sbjct: 63 AAATLWASDHELTNSDHPVLVV-----TDPLKALQELGKYYLR-KINPIVVAVTGSNGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK MIA L S +NV ++Y N+NN +GV ++L+ ++ ++ V+EMGM G++ L+
Sbjct: 117 TTKDMIASIL-STQLNVTKTYANFNNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLS 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++ P+I V+ +G++H+E G+ + +A AK EI K + V + D+PL+
Sbjct: 176 KLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKEDGLFVYDGDEPLLNERAANI 235
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
+ FG + D L A V G ++ + E +F IP G + NA AA A
Sbjct: 236 TQQTTRFGRQLTDD--LYATSVNAGSRSIEFKV-NEWPDEQFTIPMVGEYNVNNALAAMA 292
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
VA +S + +L+N + R+E S++G +I++D YN+NP + + + L ++
Sbjct: 293 VAKRLHISPNHIKTALANVELTENRAEWFKSKNGAQILSDVYNSNPTAAKQVLKTLAEMP 352
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV-VQCKWRK 437
G+R+ +LGDMLELG H + A I + LVG + +Q K ++
Sbjct: 353 VQGRRIAVLGDMLELGEAAPRLHASLAEQINPAQIQEVYLVGAEMAHLQAKLQE 406
>gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius 653-L]
gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius 653-L]
Length = 467
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 193/366 (52%), Gaps = 15/366 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R P+ F AI G++ D H++I Y GC + +Q + D Q++G
Sbjct: 34 IVIDSRQAGPD--TMFIAIIGENTDGHKYIKSA-YDLGCRTFMVSQELDILD----QLDG 86
Query: 109 NGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ V NT ++ +A Y +N +F +VG+TGSVGK+TT+ M+ A+ S ++
Sbjct: 87 SSIVCVDNTELAMGQLAKYYKN-KFDIPVVGITGSVGKTTTRDMV-YAVVSNKFRTLKNE 144
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N NN+ GV L++ +D + + AV+EMGMSG GEI LA + RP+I V+ N+G SH+E L
Sbjct: 145 KNLNNQFGVPLTIFNLDSSYECAVIEMGMSGFGEIDYLADIVRPDIAVISNIGTSHIEHL 204
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR-GVRKVFFGWRRGCDVRLVAA 284
GS E + +AK EI ++N DD ++ L + + + + +V
Sbjct: 205 GSQEGIFKAKMEISDYFSEDSCLIVNGDDEYLSKLRAEKDAISYSLCSFGKDWKNTIVLK 264
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ N V++ E + +F IP+ G H NA +A V G+++ ++ L NF
Sbjct: 265 SIENLDNKTNFVVKLEDKEEEFSIPTVGEHNVYNAMSAILVGLRLGMNIDEIRQGLMNFV 324
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
R +++ ++ND YNA+P S A++ +L + + ++V ILGD LE+G E
Sbjct: 325 ATGDRQN-IINTGKYLVINDVYNASPDSMIASLKVLA-LNKDRRKVAILGDCLEMGDYEE 382
Query: 405 ESHEKI 410
E H ++
Sbjct: 383 EGHRRV 388
>gi|383484238|ref|YP_005393151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia parkeri str. Portsmouth]
gi|378936592|gb|AFC75092.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia parkeri str. Portsmouth]
Length = 449
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 190/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILTNLSITDIHS---FGRSAKTSAELILYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + ++++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|341584098|ref|YP_004764589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia heilongjiangensis 054]
gi|340808323|gb|AEK74911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia heilongjiangensis 054]
Length = 449
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 189/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ N +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----NCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSAKTSAELILYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEHKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
2396]
gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
2396]
Length = 448
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/402 (34%), Positives = 201/402 (50%), Gaps = 25/402 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNK----NQWFFAITGQHFDAHEFISPEL 82
W ++IA++V G G TR+ ++ F A+ G FD HE+I +
Sbjct: 5 WLTDDIAKAVGG-----AAEGDSVAFTRVTTDSRADCSGALFVALKGDRFDGHEYIDAAV 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+G V V+ Q N D + V ++L L + R SRF+G + VTGS G
Sbjct: 60 -SQGAVAVMA-QAKANADVAQIIVP-----DSLAGLGRLGALNR-SRFNGPVAAVTGSAG 111
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+T K ++A L G +V ++ GN+NN +GV LSL+ + AV E+G S GEI
Sbjct: 112 KTTVKELLASILSQRG-DVCKTQGNFNNHIGVPLSLLQLTEEHRSAVFELGASAVGEIAY 170
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
+ARP++ ++ N H+E G L + +AKGEI V VLN DD +
Sbjct: 171 TVALARPQVAILNNAAAVHVEGFGDLASIVKAKGEIVCGLPEDGVAVLNKDDANFSAWVE 230
Query: 263 PRGVRKVF-FGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGLHLAINAC 320
G RKV FG D +V AQ + L G L + +P PG H NA
Sbjct: 231 MAGARKVISFGLD---DSAMVRAQNIHLELNGSTFRLSAPEGGIDATLPLPGAHNVRNAL 287
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AAAA A G +L +V L++ +PV+ R L+ +G I++D YNA+P S +AAID+L
Sbjct: 288 AAAAAALALGWTLEEVRDGLASAAPVKGRMNKLLGINGSVILDDTYNASPTSMKAAIDVL 347
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
G+R+V LG M ELGS ++H ++ Y D +D++
Sbjct: 348 ARYP--GRRIVALGHMGELGSVAEDAHREVAQYARDNGVDML 387
>gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella
melitensis bv. 1 str. 16M]
gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
abortus bv. 1 str. 9-941]
gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar
Abortus 2308]
gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
ovis ATCC 25840]
gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella abortus S19]
gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella melitensis ATCC 23457]
gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella abortus str. 2308 A]
gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 2 str. 63/9]
gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
microti CCM 4915]
gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella abortus NCTC 8038]
gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 1 str. 16M]
gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
86/8/59]
gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella abortus bv. 9 str. C68]
gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 1 str. Rev.1]
gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 3 str. Ether]
gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
abortus bv. 5 str. B3196]
gi|376272831|ref|YP_005151409.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella abortus A13334]
gi|384211802|ref|YP_005600884.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella melitensis M5-90]
gi|384408912|ref|YP_005597533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella melitensis M28]
gi|384445475|ref|YP_005604194.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Brucella melitensis NI]
gi|423166490|ref|ZP_17153193.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI435a]
gi|423171135|ref|ZP_17157810.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI474]
gi|423172782|ref|ZP_17159453.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI486]
gi|423178524|ref|ZP_17165168.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI488]
gi|423180565|ref|ZP_17167206.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI010]
gi|423183697|ref|ZP_17170334.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI016]
gi|423185363|ref|ZP_17171977.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI021]
gi|423188498|ref|ZP_17175108.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI259]
gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella
melitensis bv. 1 str. 16M]
gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
abortus bv. 1 str. 9-941]
gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin
Cpn60:Cytoplasmic peptidoglycan synthetases,
C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus
2308]
gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
ovis ATCC 25840]
gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella abortus S19]
gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella melitensis ATCC 23457]
gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella abortus str. 2308 A]
gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
microti CCM 4915]
gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella abortus NCTC 8038]
gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 1 str. 16M]
gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
86/8/59]
gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella abortus bv. 9 str. C68]
gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 3 str. Ether]
gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 1 str. Rev.1]
gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella melitensis bv. 2 str. 63/9]
gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
abortus bv. 5 str. B3196]
gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Brucella melitensis M28]
gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella melitensis M5-90]
gi|349743464|gb|AEQ09007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Brucella melitensis NI]
gi|363400437|gb|AEW17407.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella abortus A13334]
gi|374538469|gb|EHR09977.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI474]
gi|374543974|gb|EHR15452.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI435a]
gi|374544301|gb|EHR15778.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI486]
gi|374545305|gb|EHR16768.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI488]
gi|374548096|gb|EHR19548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI010]
gi|374548525|gb|EHR19973.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI016]
gi|374559060|gb|EHR30449.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI259]
gi|374560073|gb|EHR31456.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Brucella
abortus bv. 1 str. NI021]
Length = 481
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 205/436 (47%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|419720359|ref|ZP_14247595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnoanaerobaculum saburreum F0468]
gi|383303459|gb|EIC94908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnoanaerobaculum saburreum F0468]
Length = 457
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 201/390 (51%), Gaps = 19/390 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ--VCNNWDKGFVQV 106
I D+R KN F + G+ DAH+F+ +Y GC I ++ + D V V
Sbjct: 29 IVIDSR--EATKNSLFVPVVGERNDAHKFLEA-VYTAGCRVAISSRKDIFLKPDFNVVLV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E NT +L ++ Y R S+ S LVG+TGSVGK+TT+ M+ALAL L VF++
Sbjct: 86 E-----NTTKALQDLGTYLR-SKLSLPLVGITGSVGKTTTREMVALALSDL--KVFKTPN 137
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+N+++GV +++ I+ +I V+E+GMS GE+ +A++ + + VV N+G +H+E+L
Sbjct: 138 NFNSQLGVPVTISRINDE-EIGVIELGMSMFGEMERIAKIVKCDCAVVTNIGTAHIENLH 196
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+ E++ K I K G V LNAD+ +++ G+ FF + D A +
Sbjct: 197 TKENIRSEKFHIMDGMKAGSVVFLNADNDMLSTPPKREGIIYKFFSAKGNTDCDYYATDI 256
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+ +K ++ G H NA A AVA + + + LS+F
Sbjct: 257 VFHNAMPEFTAHICGRSIKVILNVFGEHQVSNALVALAVAHHYNLDIESASKHLSSFRGF 316
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R E L+ + +++D YNA+P S +A++ +LKD +++ +L DM ELG+ E +
Sbjct: 317 SHRQE-LIELKNLTVIDDTYNASPDSMKASLSILKDFRAK-RKIAVLADMKELGADEVKF 374
Query: 407 HEKILSYCCDACI-DLIGLVGD--RVVVQC 433
H ++ + + D + VG+ R +V C
Sbjct: 375 HREVGEFISENVKPDAVFSVGELAREIVNC 404
>gi|429727321|ref|ZP_19262095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius VPI 4330]
gi|429152773|gb|EKX95583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus anaerobius VPI 4330]
Length = 467
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 194/366 (53%), Gaps = 15/366 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I D+R P+ F AI G++ D H++I Y GC + +Q + D Q++G
Sbjct: 34 IVIDSRQAGPD--TMFIAIIGENTDGHKYIKS-AYDLGCRTFMVSQELDILD----QLDG 86
Query: 109 NGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ V NT ++ +A Y +N +F +VG+TGSVGK+TT+ M+ A+ S ++
Sbjct: 87 SSIVCVDNTELAMGQLAKYYKN-KFDIPVVGITGSVGKTTTRDMV-YAVVSNKFRTLKNE 144
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
N NN+ GV L++ +D + + AV+EMGMSG GEI LA + RP+I V+ N+G SH+E L
Sbjct: 145 KNLNNQFGVPLTIFNLDSSYECAVIEMGMSGFGEIDYLADIVRPDIAVISNIGTSHIEHL 204
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR-GVRKVFFGWRRGCDVRLVAA 284
GS E + +AK EI ++N DD ++ L + + + + +V
Sbjct: 205 GSQEGIFKAKMEISDYFSEDSCLIVNGDDEYLSKLRAEKDAISYSLCSFGKDWKNTIVLK 264
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ N V++ E + +F IP+ G H NA +A V G+++ ++ L NF
Sbjct: 265 SIENLDNKTNFVVKIEDKEEEFSIPTVGEHNVYNAMSAILVGLRLGMNIDEIRQGLMNFV 324
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
R ++ + + ++ND YNA+P S A++ +L + + ++V ILGD LE+G E
Sbjct: 325 ATGDRQNIIDTGKYL-VINDVYNASPDSMIASLKVLA-LNKDRRKVAILGDCLEMGDYEE 382
Query: 405 ESHEKI 410
E H ++
Sbjct: 383 EGHRRV 388
>gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia conorii str. Malish 7]
gi|20139035|sp|Q92H60.1|MURF_RICCN RecName: Full=Probable
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
AltName: Full=UDP-MurNAc-pentapeptide synthetase
gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia conorii str. Malish 7]
Length = 449
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 190/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSAKTSAELILYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + ++++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|373955131|ref|ZP_09615091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Mucilaginibacter
paludis DSM 18603]
gi|373891731|gb|EHQ27628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Mucilaginibacter
paludis DSM 18603]
Length = 433
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/395 (31%), Positives = 199/395 (50%), Gaps = 24/395 (6%)
Query: 48 IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVE 107
+I TDTR + P FFA+ G FDA+ F L VI N N K + V+
Sbjct: 15 VISTDTRKIIPGS--IFFALKGDKFDANTFAQQALDAGAAYAVIDNGDYNVSQKCIL-VD 71
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L+ L N+A Y R + + VG+TGS GK+TTK +I L S N + +YGN
Sbjct: 72 -----DVLSCLQNLARYHR-KQLNIPFVGLTGSNGKTTTKELIRAVL-SQHFNTYATYGN 124
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+++ ID+ V++AV+EMG + + EI L +A+P ++ NVG +HLE G
Sbjct: 125 LNNHIGVPLTILAIDQTVEMAVIEMGANHQKEIELLCSIAQPTHGLITNVGKAHLEGFGG 184
Query: 228 LEDVARAKGEIFQESKLGD-VCVLNADDPLVANLTVPRGVRKV-FFGWRRGCDVRLVAAQ 285
E V + KGE++ K V +N D ++ ++ R + V ++G G + ++ +
Sbjct: 185 AEGVKKGKGELYDYLKTSKGVIFVNQDSKVLTDMVAERALTDVQYYGSDIGNN---ISGE 241
Query: 286 VANGGLGVQVVLEKEREMVKFVIPS-PGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ +++ + + E V G + N AA + F +S ++ LS +
Sbjct: 242 LLENSPYLKLRWKIKNEAYHTVQSQLTGAYNMDNLLAAICIGHYFKLSPDEINTGLSGYQ 301
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
P RS+++ + S ++ D YNANP S AI+ + + G++VVILGDM ELG
Sbjct: 302 PHNNRSQIVKTASNT-LICDYYNANPSSMFVAIENIGKLPA-GRKVVILGDMFELGEESA 359
Query: 405 ESHEKILSYCCDACIDLIGLVGDRVVVQCKWRKWS 439
HE ++ ID +R+ + ++ K S
Sbjct: 360 VEHESVIQKAMQTAID------ERIFIGAEFYKQS 388
>gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium limosum KIST612]
gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Eubacterium limosum KIST612]
Length = 453
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 199/402 (49%), Gaps = 20/402 (4%)
Query: 28 TINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
++ ++ + G++++ G I D+R + +N F I G+ D H FI
Sbjct: 5 SLEQLVKITEGRLIQTGTTDWISGAAIDSRKI--EENDLFIPIKGEKADGHCFIKIAAE- 61
Query: 85 KGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KGC ++ +G V VE + L ++ +A Y R R+ ++ VTGS G
Sbjct: 62 KGCSTSFTETEALDFPEGISVVLVE-----SCLEAMKALAKYNRE-RYDIPVIAVTGSSG 115
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK +IA L S ++ GN+NN G+ +L + +IAV+EMGM +I +
Sbjct: 116 KTTTKDLIASVL-SQKYKTLKTQGNFNNEYGIPQTLFNLQPEHEIAVIEMGMDHLDDIRK 174
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
RP I V+ N+G +H+E L + +++ AK EIF+ GD+ +LN DD + +
Sbjct: 175 SIGEVRPHISVITNIGTAHIEILKTQDNILAAKKEIFETMGPGDIALLNGDDVYLNKIKE 234
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
V +G D+ L A QV + G++ V + E F PG+H N A
Sbjct: 235 DEEPFSVVRVGIKGEDLSLKAEQVDSSAQGIRFVADGEH----FHFAYPGIHNVYNCLTA 290
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
+ + ++ ++ L F P R +++ R ++ND+YNANP + +AA+D+L D
Sbjct: 291 IWLGRYYQMTHEEIQRGLDAFKPSGNRMDIVRVREAT-VINDSYNANPDAMKAALDMLWD 349
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGL 424
+ + +R+ +LGDMLE+G H +I +Y + LI +
Sbjct: 350 MGKSCRRLAVLGDMLEMGEMAESGHLEIGAYAAEKADVLIAV 391
>gi|373499307|ref|ZP_09589797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Fusobacterium sp. 12_1B]
gi|371959148|gb|EHO76842.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Fusobacterium sp. 12_1B]
Length = 428
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 196/395 (49%), Gaps = 29/395 (7%)
Query: 40 ILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNW 99
+++ G + D+R K FFAI + + +I L KG VI + N
Sbjct: 17 VVEKNEIGHVVMDSR--KVQKGDLFFAIN----NGNSYIDDVL-EKGAALVIADNYKGN- 68
Query: 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159
DK ++VE +T+ + +A R++ ++ +TGS GK+TTK MI L V
Sbjct: 69 DKRVIKVE-----DTIKCMQELAKKYRHT-LDVKVIAITGSNGKTTTKDMIYSVLSQKYV 122
Query: 160 NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGD 219
++ GN NN +GV +++ +D ++AVLE+GMSG GEI L+ + P+I V+ N+GD
Sbjct: 123 TA-KTMGNLNNHIGVPFTILQLDEKCEVAVLELGMSGFGEIDLLSSIVEPDIGVITNIGD 181
Query: 220 SHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV 279
SHLE L + E+V +AK E+ + ++ V DDP + +L G++ G+ +
Sbjct: 182 SHLEFLKTRENVFKAKTELVKYVSAENLIVF-GDDPFLKDLN---GIK---VGYENNNNY 234
Query: 280 RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGIS 339
++ ++ GL E E K+ + G H IN A + GVS ++
Sbjct: 235 QIKNFTDSDEGLYF------EMEEKKYTVSLNGKHNCINTAMAIVIGKKMGVSYEEISNG 288
Query: 340 LSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLEL 399
L N MR + + + I +NDAYNA+PIS +++ + + ++ +LGDMLEL
Sbjct: 289 LKNLELTPMRFQ-KIEKENIIYINDAYNASPISVGFSLETFDKLYNDALKITVLGDMLEL 347
Query: 400 GSTERESHEKILSYCCDACIDLIGLVGDRVVVQCK 434
G E E HE I+ D I L G+R+ K
Sbjct: 348 GEKEIEYHENIIEKALIIHTDKIYLYGERMAKALK 382
>gi|350273745|ref|YP_004885058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
japonica YH]
gi|348592958|dbj|BAK96919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
japonica YH]
Length = 449
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 189/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ N +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----NCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSAKTSAELILYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPAKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAEHKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|429754188|ref|ZP_19286928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 326 str. F0382]
gi|429170195|gb|EKY11901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 326 str. F0382]
Length = 443
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/407 (31%), Positives = 199/407 (48%), Gaps = 31/407 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR +A K +FA+ G F+ + F + L VI DK + +
Sbjct: 14 VSTDTRNIA--KGSIYFALKGASFNGNTFAAEALEKGAQYAVIDEAAYQTSDKMILVSD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L +L +A Y RNS +++G+TGS GK+TTK +I L S +NV + GN
Sbjct: 71 -----VLTTLQELATYHRNS-LKTLVIGITGSNGKTTTKELIKSVL-SQQLNVVATQGNL 123
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A+P+ + ++G +HLE GS
Sbjct: 124 NNNIGVPLTLLSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYITSIGKAHLEGFGSF 183
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVFFGWRRGCDVRL------ 281
E V + KGE++ K ++ NAD+P+ L + FG +G +V +
Sbjct: 184 EGVIQTKGELYDYLKAHQKTIIANADNPITEALLADYH-NEYSFGVGKGVNVAVQCLGTQ 242
Query: 282 -VAAQVANGGLGVQVVLEKEREMVKFVIPSPGL---HLA-----INACAAAAVATLFGVS 332
V Q + Q E + +++ +P + HL N AA A F +S
Sbjct: 243 PVTIQFEDA--STQTTEEGGKVLIEGFTDAPTVATSHLVGSYNFTNIAAAVAFGKFFKLS 300
Query: 333 LAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVI 392
+ + + P RS+L+ S ++ DAYNANP S AAID L ++ K+V+I
Sbjct: 301 NEAIKRGIEAYIPQNNRSQLMQWGSNTVLL-DAYNANPSSMAAAIDNLLTMSDEKKKVLI 359
Query: 393 LGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV-VQCKWRKW 438
LGDM ELG+ E H++I+ + + + LVG Q + ++
Sbjct: 360 LGDMFELGNYAAEEHQRIVDKLKNYEWEGVYLVGSNFAKTQSPYPQY 406
>gi|374319529|ref|YP_005066028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia slovaca 13-B]
gi|360042078|gb|AEV92460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia slovaca 13-B]
Length = 450
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 187/377 (49%), Gaps = 27/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLLQNDFLVFASRGNFNNKLGMLINL 145
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 146 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 205
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 206 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSAKTSAELILYE----NL 258
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 259 GEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 318
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 319 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 376
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 377 LVQYILDAACSKVYLVG 393
>gi|51246753|ref|YP_066637.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Desulfotalea psychrophila LSv54]
gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein
[Desulfotalea psychrophila LSv54]
Length = 1014
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 140/442 (31%), Positives = 222/442 (50%), Gaps = 31/442 (7%)
Query: 7 PHTLACTSKTTF--RCPSNSPI--WTINEIAESVNGKIL--KWGPP--GIICTDTRILAP 58
P+ L T K F R + + WT +++ + G ++ P G + TD+R +
Sbjct: 518 PYQLGATGKKFFDDRLQAGRALASWTPDKLVAATGGSLIGGMLTPLLLGEVTTDSRSVG- 576
Query: 59 NKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSL 118
+ F A+ G++ D H ++ ++ G ++ + + V V +T +L
Sbjct: 577 -RGSIFVALRGENHDGHAYLD-QVVAAGAACLVVEKARPDLTCPQVLV-----ADTRRAL 629
Query: 119 VNMACYARNSRFSG----VLVGVTGSVGKSTTKSMIALALESL---GVN-----VFQSYG 166
+MA AR F+G V+VG+TGS GK+T K M A L SL G V ++ G
Sbjct: 630 GDMAA-ARRCAFAGTTKPVVVGITGSSGKTTIKEMTASILASLWPAGAEYPENVVLKTEG 688
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +G+ LSL+ +D AVLEMGM+ GEI LA +A+P+I V NV +HL LG
Sbjct: 689 NFNNLIGLPLSLLPLDNMHRAAVLEMGMNSPGEIARLAEIAQPDICCVANVHAAHLSGLG 748
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
S+E VARAK E+F + + + V+N DDP V + +K+ + + A+ +
Sbjct: 749 SIEGVARAKEELFAHAPVDSILVVNLDDPHVVEMAKGYEQKKICYSLSAAGSADIWASDL 808
Query: 287 ANGGLG-VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
++G G + L E + + G H NA AAA +A G S Q+ + L ++
Sbjct: 809 SSGEAGSIDFNLHLGAESTSVQLDTLGEHNVSNALAAAGIALAAGASPQQIALGLGSYKT 868
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
R E + + I++D YNANP S A + L +A K++ I+GDMLELG E
Sbjct: 869 PSKRLERIRTSCNWTIISDCYNANPASMSAGLRTLATVAGE-KKIAIVGDMLELGEFAEE 927
Query: 406 SHEKILSYCCDACIDLIGLVGD 427
+H +I S + +D + +VG+
Sbjct: 928 AHRQIGSLAGELSLDYLLIVGE 949
>gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,141,733]
gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,141,733]
Length = 450
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 197/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + + D+R + + F + G D HEFI
Sbjct: 4 TIQEIAQAVGSECSELTKITNVEFDSRKIT--EGSLFVPLAGTR-DGHEFIQQ------- 53
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q + V + L ++ +A Y + +V +TGS GK
Sbjct: 54 -AITNGASASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 112 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ +D+PL+ LT
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPSDEPLLTPLTAT 230
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 231 LVQTVTTFGIGNG-DVH--AEVTAEGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 283
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 284 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 343
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 344 PTKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|421735798|ref|ZP_16174684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium bifidum IPLA 20015]
gi|407296912|gb|EKF16408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium bifidum IPLA 20015]
Length = 519
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 142/436 (32%), Positives = 211/436 (48%), Gaps = 46/436 (10%)
Query: 28 TINEIAESVNGKIL--------KWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHE 76
T+ ++AE+V G+++ + G + + D+R + + F AI G+ D H+
Sbjct: 11 TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQV--REGSVFVAIAGERVDGHD 68
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLV 135
F++ V ++ ++V D Q+ V+ L L AR + + L+
Sbjct: 69 FVARAGESGAVVALVQHEV----DAPVAQIVVPDTVDALGLLAKANIAARRTVGTPFTLI 124
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK+TTK ++A L +LG V G++NN +G+ L+ + + R V EMG S
Sbjct: 125 GITGSVGKTTTKDLMAALLSTLGPTV-APVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 183
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L +A P+I VVL VG +HL GS+E +A+AK EI Q + VLNADD
Sbjct: 184 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 243
Query: 256 LVANLT--VPRGVRKVFFGWRRGCDVRLVAAQVANG---GLGVQVVLEKEREMVKFVIPS 310
VA + P+G VF+ G D A A+G L V + + F +
Sbjct: 244 HVAAMAPLAPQG--HVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 301
Query: 311 P------------GLHLAINACAAAAVATLFGVSLAQVGISL---SNFSPVQMRSELLVS 355
G H +NA AAA+VA L GV L + +L S SP +M V
Sbjct: 302 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVS-AVR 360
Query: 356 RSGIK--IVNDAYNANPISTRAAIDLLKDIACNGK--RVVILGDMLELGSTERESHEKIL 411
R G+ +++D++NANP S RA +D L + R+ +LG MLELG E HE I
Sbjct: 361 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDADPYRIAVLGAMLELGGDESALHEGIG 420
Query: 412 SYCCDACIDLIGLVGD 427
Y ID + VG+
Sbjct: 421 EYAAGLPIDAVIAVGN 436
>gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
NCIMB 41171]
gi|390936445|ref|YP_006394004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium bifidum BGN4]
gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
NCIMB 41171]
gi|389890058|gb|AFL04125.1| probableUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
[Bifidobacterium bifidum BGN4]
Length = 513
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 144/438 (32%), Positives = 212/438 (48%), Gaps = 50/438 (11%)
Query: 28 TINEIAESVNGKIL--------KWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHE 76
T+ ++AE+V G+++ + G + + D+R + + F AI G+ D H+
Sbjct: 5 TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQV--REGSVFVAIAGERVDGHD 62
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV--- 133
F++ V ++ ++V D Q+ V+ L L AR R +G
Sbjct: 63 FVARAGESGAVVALVQHEV----DAPVAQIVVPDTVDALGLLAKANIAAR--RAAGTPFT 116
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
L+G+TGSVGK+TTK ++A L +LG V G++NN +G+ L+ + + R V EMG
Sbjct: 117 LIGITGSVGKTTTKDLMAALLSTLGSTV-APVGSFNNEIGLPLTALKVGRDTRFFVAEMG 175
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
S GEI L +A P+I VVL VG +HL GS+E +A+AK EI Q + VLNAD
Sbjct: 176 ASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNAD 235
Query: 254 DPLVANLT--VPRGVRKVFFGWRRGCDVRLVAAQVANG---GLGVQVVLEKEREMVKFVI 308
D VA + P+G VF+ G D A A+G L V + + F +
Sbjct: 236 DAHVAAMAPLAPQG--HVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTL 293
Query: 309 PSP------------GLHLAINACAAAAVATLFGVSLAQVGISL---SNFSPVQMRSELL 353
G H +NA AAA+VA L GV L + +L S SP +M
Sbjct: 294 ERADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVS-T 352
Query: 354 VSRSGIK--IVNDAYNANPISTRAAIDLLKDIACNGK--RVVILGDMLELGSTERESHEK 409
V R G+ +++D++NANP S RA +D L + R+ +LG MLELG E HE
Sbjct: 353 VRRGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEG 412
Query: 410 ILSYCCDACIDLIGLVGD 427
I Y ID + VG+
Sbjct: 413 IGEYAAGLPIDAVIAVGN 430
>gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
suis 1330]
gi|376281098|ref|YP_005155104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Brucella
suis VBI22]
gi|384225092|ref|YP_005616256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Brucella
suis 1330]
gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
suis 1330]
gi|343383272|gb|AEM18764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
suis 1330]
gi|358258697|gb|AEU06432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
suis VBI22]
Length = 481
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 205/436 (47%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 483
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 209/412 (50%), Gaps = 23/412 (5%)
Query: 31 EIAESVNGK--ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EIA+++N + I +W + + D+R L + F + G H D H+++ + G
Sbjct: 31 EIAKAINAQNEIEQWKDIEVTSVSFDSRHL--ERGALFIPLQGAH-DGHQYVETA-FTNG 86
Query: 87 CVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ +++ NN V + L +L + Y + + + ++V VTGS GK
Sbjct: 87 AAATLWASDHELTNNGHPVLVVTD------PLKALQQLGKYYLH-KINPIVVAVTGSNGK 139
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA L S +NV ++Y N+NN +GV ++L+ ++ ++ V+EMGM G++ L
Sbjct: 140 TTTKDMIASIL-STQLNVTKTYANFNNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFL 198
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++ P+I V+ +G++H+E G+ + +A AK EI K + V + D+PL+
Sbjct: 199 SKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKEDGLLVYDGDEPLLNERAAK 258
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
+ FG + D L A V G + + E +F IP G + NA AA
Sbjct: 259 VAQQTSRFGRQLTDD--LYATSVTAGPRSISFKV-NEWPDEQFTIPMVGEYNVNNALAAM 315
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
VA +S A + +L+N + R+E S++G +I++D YN+NP + + + L +
Sbjct: 316 VVAKRLHISPAHIKTALANVELTENRAEWFKSKNGAQILSDVYNSNPTAAKQVLKTLAAM 375
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV-VQCK 434
G+R+ +LGDMLELG H + + A I + L+G +V +Q K
Sbjct: 376 PVQGRRIAVLGDMLELGDAAPRLHASLATEINPAQIQEVYLIGTEMVHLQSK 427
>gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,231,501]
gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
1,231,501]
Length = 450
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 196/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 4 TIQEIAQAVGSECSALTKITNVEFDSRKI--TEGSLFVPLAGTR-DGHEFIQQ------- 53
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q + V + L ++ +A Y + +V +TGS GK
Sbjct: 54 -AITNGASASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 112 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 231 LVQTVTTFGIGNG-DVH--AEVTAKGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 283
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 284 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 343
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 344 LTKGRRIAVLADMLELGKDSLSMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|429755790|ref|ZP_19288420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 324 str. F0483]
gi|429172670|gb|EKY14214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 324 str. F0483]
Length = 444
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 195/395 (49%), Gaps = 35/395 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + + DK + V+
Sbjct: 15 VSTDTRNITPNS--IYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVF-FGWRRGCDVRL----- 281
E V + KGE++ K ++ NAD+P+ L V+ FG G +V +
Sbjct: 185 EGVIKTKGELYDYLKAHHKTIIANADNPITEALL--GNYNNVYSFGVGEGVNVSVQCLST 242
Query: 282 --VAAQVANGGLGVQVVLEKEREMVKFVIPSPGL---HLA-----INACAAAAVATLFGV 331
V Q A+ L Q E ++ +P + HL N A+ A F +
Sbjct: 243 QPVKIQFADSSL--QTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASVAFGRYFKL 300
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
S + + ++ P RS+LL S ++ DAYNANP S AAID L + + +V+
Sbjct: 301 STKAIQKGIESYIPQNNRSQLLEWGSNTVLL-DAYNANPSSMTAAIDNLLSMNSSPNKVL 359
Query: 392 ILGDMLELGSTERESHEKILSYCCD---ACIDLIG 423
ILGDM ELG + H+ I+ + A I LIG
Sbjct: 360 ILGDMFELGDYATQEHQSIVDKLTEHQWAGIYLIG 394
>gi|395241892|ref|ZP_10418892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus pasteurii CRBIP 24.76]
gi|394480640|emb|CCI85132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus pasteurii CRBIP 24.76]
Length = 455
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 186/384 (48%), Gaps = 18/384 (4%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
F + G+ D H+F++ + G G V Q N K +E + LN++ +A
Sbjct: 40 FVPLEGER-DGHDFVASAI-GNGAVATFWKQGHPNKPKNIAVLEVK---DPLNAMQELAR 94
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
Y + + +VG+TGS GK+TTK M+A L + NV ++ N+NN +GV L+++ +
Sbjct: 95 YYL-QKVNPTVVGITGSNGKTTTKDMVAAVL-AKRFNVHKTQANFNNDIGVPLTILEMKP 152
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
+I VLEMGM G++ L+ + P++ V+ +G++H+E GS + +A AK EI +
Sbjct: 153 NTEILVLEMGMDRSGQLHHLSELTHPDVTVITMIGEAHIEFFGSRDKIADAKMEITDFLR 212
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREM 303
+ N D+PL+A K FG+ V + +V +
Sbjct: 213 EDGEFIYNGDEPLLAERAQKLTQSKATFGFNNNDTVYATDFRSYKHHATFKVNNSDQ--- 269
Query: 304 VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVN 363
KF IP G H NA AA +V FG S ++ SL+NF+P R E G I++
Sbjct: 270 -KFSIPMIGKHNISNAMAALSVGRHFGESDEEIAASLANFTPTANRMEWEKGDVGEDIMS 328
Query: 364 DAYNANPISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDL 421
D YN+NP + RA + I G+R+ +LGDMLELG H + I+
Sbjct: 329 DVYNSNPTAVRAVLTSFGQIEMPNGGQRIAVLGDMLELGEQSASLHAGLADSLDPQVIND 388
Query: 422 IGLVGDRV-----VVQCKWRKWSM 440
+ L GD + V+Q K+ + +
Sbjct: 389 VYLFGDEMKNLYEVLQAKYDQAHL 412
>gi|451819445|ref|YP_007455646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451785424|gb|AGF56392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 456
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 220/411 (53%), Gaps = 34/411 (8%)
Query: 31 EIAESVNGKILKWGPPG---IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
EI ++V GK+L G +I TDTR + K+ F A+ G++F+ ++++ + KG
Sbjct: 9 EIIKAVEGKVLYNNNEGNFNVISTDTRKIE--KDNLFIALKGENFNGNDYVIKAI-EKGA 65
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGN------VNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+I ++V F + E N +T +L ++A + R + +VG+TGS
Sbjct: 66 SIIIIDEV------KFREEELNNQGTIIKVKDTKTALGDLARFYR-KKLGIKVVGITGST 118
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK ++A A S VF++ GN+NN +G+ L + + + DIAVLEMG S GEI
Sbjct: 119 GKTSTKDLVA-AFLSGKYKVFKTQGNFNNEIGLPLMIFQLSKDYDIAVLEMGTSNFGEIN 177
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAK---GEIFQESKLGDVCVLNADDPLVA 258
LA +A P++ + N+G SH+E L + E++ + K + F E + ++N ++ ++
Sbjct: 178 RLASIALPDVAAITNIGVSHIEYLKTRENILKEKMCITDFFAEQ---NSLIVNCENDMLQ 234
Query: 259 NLTV--PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L ++KV G+ D+ ++ + VV E+E +F + G H
Sbjct: 235 TLNKCDKFNLQKV--GYDEKYDMYAKNIELTDKSTSFDVVT-MEKESHRFNLNMIGEHNV 291
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAA 376
+NA +A FG++ ++ L NF+ MR E + ++ I+ND+YNA+P S +AA
Sbjct: 292 LNALIGIQIARDFGLTFEEMEKGLENFNATSMRLE-FIQKNNFTIINDSYNASPDSMKAA 350
Query: 377 IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
I++LK+ + +++ +LG M ELG ++H +I +Y + +D++ G+
Sbjct: 351 IEVLKN-SSGTRKLAVLGTMGELGDYANKAHTEIGNYAKEK-VDILLTTGE 399
>gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella inopinata BO1]
gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella inopinata BO1]
Length = 481
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 128/436 (29%), Positives = 205/436 (47%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK + PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVK--VGMPGRHIV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTIPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lysinibacillus sphaericus C3-41]
gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lysinibacillus sphaericus C3-41]
Length = 455
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 193/387 (49%), Gaps = 20/387 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR + + F G+H + H +++ + + KG + + N G +
Sbjct: 27 ISIDTRTI--QQGDLFVPFRGEHTNGHRYVT-QAFEKGAGASLWQKDEPNPPDGIPLLFV 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L + ++F +G+TGS GK++TK ++A L V ++ GN+
Sbjct: 84 DDPEIALQEMARAYRLEHKAKF----IGITGSNGKTSTKDILAGTLAPF-FKVQKTIGNF 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN++G+ ++++ +D ++AVLEMGMSG GEI L ++A+P + V+ N+G++H++ LGS
Sbjct: 139 NNQLGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSR 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAAQV- 286
+A+AK EI Q + + + D+PL+ L + + V FG D L A +
Sbjct: 199 AGIAQAKFEIIQGMQPEGLLFYDGDEPLLQELVAKEQHINAVAFGLE--PDNLLYADHIH 256
Query: 287 --ANG-GLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
ANG ++E + F I G H N A ++ G++ Q+ SL +
Sbjct: 257 ANANGSSFTTHGMIEGD-----FFISVLGKHQVKNTLIAMLISNQLGLNNEQIRTSLEHV 311
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR + + +G +NDAYNA P S +AAI + ++ ++LGDMLELG E
Sbjct: 312 VLTDMRMQQVQGTNGALFINDAYNAAPTSVKAAIQFIATSTIRPEKWLVLGDMLELGPDE 371
Query: 404 RESHEKILSYCCDACIDLIGLVGDRVV 430
+ HE + Y + ID + L G R+
Sbjct: 372 QRFHEGLAEYINEQEIDYVCLFGARMT 398
>gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus haemolyticus JCSC1435]
gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Staphylococcus haemolyticus JCSC1435]
Length = 451
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 202/393 (51%), Gaps = 24/393 (6%)
Query: 28 TINEIAE----SVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ +I E ++ + L+ G+ D+R A N F G++ D H F+S L
Sbjct: 5 TLQQIQEWIPCDIDSQYLRQTIKGV-TIDSR--AIKTNMLFIPFKGENVDGHCFVSQALK 61
Query: 84 GKGCVGVI--GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
G+ + +N + V+ +TL +L +A A + ++GVTGS
Sbjct: 62 DGAGASFYEKGHDIDDNVKGPIIWVD-----DTLIALQQLAK-AYLKHVNPKVIGVTGSN 115
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MI L + V ++ GN+NN +G+ L+++ +D +I++LEMGMSG EI
Sbjct: 116 GKTTTKDMIESVLHT-EFKVKKTQGNYNNEIGLPLTILELDLDTEISILEMGMSGFHEIE 174
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NL 260
L+ +A P+I V+ N+G+SH++ LGS E +A+AK EI K + + D+PL+ ++
Sbjct: 175 LLSNIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKKEGTFIYDGDEPLLEPHV 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ + + G ++ + N G+ + + + +P G+H NA
Sbjct: 235 KKIKHAKCLSVGLKQDNALVCEVEHSENDGIAFSINGNEH-----YKLPILGIHNMKNAA 289
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
A A+ G+ + ++++ MR E ++ I I+NDAYNA+P S +AAID L
Sbjct: 290 IAIAIGHELGLKYETIQHNINHVQLTGMRMERHITDDDITIINDAYNASPTSMKAAIDTL 349
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSY 413
+ G+++++L D LELG R HE++ +Y
Sbjct: 350 SQM--EGRKIIVLADSLELGENSRSMHEEVGAY 380
>gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium bifidum S17]
gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium bifidum S17]
Length = 519
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 142/436 (32%), Positives = 211/436 (48%), Gaps = 46/436 (10%)
Query: 28 TINEIAESVNGKIL--------KWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHE 76
T+ ++AE+V G+++ + G + + D+R + + F AI G+ D H+
Sbjct: 11 TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQV--REGSVFVAIAGERVDGHD 68
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLV 135
F++ V ++ ++V D Q+ V+ L L AR + + L+
Sbjct: 69 FVARAGESGAVVALVQHEV----DAPVAQIVVPDTVDALGLLAKANIAARRTVGTPFTLI 124
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK+TTK ++A L +LG V G++NN +G+ L+ + + R V EMG S
Sbjct: 125 GITGSVGKTTTKDLMAALLSTLGPTV-APVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 183
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L +A P+I VVL VG +HL GS+E +A+AK EI Q + VLNADD
Sbjct: 184 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 243
Query: 256 LVANLT--VPRGVRKVFFGWRRGCDVRLVAAQVANG---GLGVQVVLEKEREMVKFVIPS 310
VA + P+G VF+ G D A A+G L V + + F +
Sbjct: 244 HVATMAPLAPQG--HVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 301
Query: 311 P------------GLHLAINACAAAAVATLFGVSLAQVGISL---SNFSPVQMRSELLVS 355
G H +NA AAA+VA L GV L + +L S SP +M V
Sbjct: 302 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVS-TVR 360
Query: 356 RSGIK--IVNDAYNANPISTRAAIDLLKDIACNGK--RVVILGDMLELGSTERESHEKIL 411
R G+ +++D++NANP S RA +D L + R+ +LG MLELG E HE I
Sbjct: 361 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIG 420
Query: 412 SYCCDACIDLIGLVGD 427
Y ID + VG+
Sbjct: 421 EYAAGLPIDAVIAVGN 436
>gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella sp. BO2]
gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella sp. BO2]
Length = 481
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 205/436 (47%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGYFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHIV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSI 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQTGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQIEYRQ 434
>gi|433545493|ref|ZP_20501846.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
[Brevibacillus agri BAB-2500]
gi|432183148|gb|ELK40696.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
[Brevibacillus agri BAB-2500]
Length = 460
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 189/395 (47%), Gaps = 14/395 (3%)
Query: 40 ILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV 95
+L G P ++ + DTR L F A+TG D H+F+ ++ NQ
Sbjct: 16 LLLAGSPHLVLSSVHFDTRQL--KAGSLFVALTGGVRDGHDFLLQAAEQGAVAALVSNQ- 72
Query: 96 CNNWDKGFVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154
G G VN TL +A R FS + +TGS+GK+T K ++A L
Sbjct: 73 -EKIPAGLPDEFGLILVNDTLRGFQKLAAAYRKD-FSIPHIAITGSIGKTTVKDIVAHVL 130
Query: 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV 214
E+ V+++Y N NN +GV LSL+ ++ AVLE+GM+ GEI LA + +P+I V+
Sbjct: 131 EARS-PVYKTYKNLNNHLGVPLSLLQMEPEHQAAVLELGMNHAGEIDLLASLVKPQISVI 189
Query: 215 LNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274
+G+SHLE G+ E +A AK E+ + + +LN D + + +++ +
Sbjct: 190 TYIGESHLEFFGTREKIALAKAELLPHTAPDGLVLLNKDSEYLPRIAHLYSGEIMYYSVK 249
Query: 275 RGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLA 334
CD+ + + G V F +P G H +NA A A+A G+S
Sbjct: 250 EPCDLWAEQIEPTDSGTQFDVCFASGERFSAF-LPLHGKHSVLNALPAVAIARRLGMSAE 308
Query: 335 QVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394
Q+ +LS MR E + SR G ++DAYNA+P S AA ++ K+V++LG
Sbjct: 309 QIVEALSTVKLSAMRFEQVPSRHGALYISDAYNASPSSMEAAARTFAELFFARKKVLVLG 368
Query: 395 DMLELGSTERESHEKILSYCCDAC--IDLIGLVGD 427
DM E+G + H + D I+L+ VG+
Sbjct: 369 DMYEMGPQSAQMHAGVGQALTDIADRIELLVTVGE 403
>gi|374583032|ref|ZP_09656126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus youngiae DSM 17734]
gi|374419114|gb|EHQ91549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus youngiae DSM 17734]
Length = 478
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 128/400 (32%), Positives = 199/400 (49%), Gaps = 24/400 (6%)
Query: 27 WTINEIAESVNGKILKWGPP-----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
WT + IA+ G + +G P G I D+R + FFA+ G+ D H++I
Sbjct: 4 WTADVIAQVAKGTL--FGNPEAEVQGCII-DSR--HAQGGEMFFALPGEKVDGHDYIEAA 58
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQV------EGNGNV---NTLNSLVNMACYARNSRFSG 132
+ G V VI ++ + V EG + + +++L +A R
Sbjct: 59 -WKNGAVLVIADEARFQEESELVLPDKTTIPEGKALLLVKSVVSALQELAAGWR-MELKA 116
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
+VGVTGS GK+TTK MI A+ S V+++ N NN +G+ L+++ +I +LEM
Sbjct: 117 KVVGVTGSNGKTTTKDMI-YAVLSQSFRVYRNKQNHNNELGLPLTILNAPPGTEILILEM 175
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GM G GEI L +A+P+I V+ N+G +HLE L + E +A+AK E+ ++N
Sbjct: 176 GMRGLGEIKALCEIAKPDIGVITNIGTTHLELLLTQERIAQAKWELIDALPDDGKGIING 235
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN--GGLGVQVVLEKEREMVKFVIPS 310
+D V F+G + + G LG + + E +P
Sbjct: 236 EDLFSVQKAVNDPHPICFYGLEGAFAAPHIRGERLRPWGVLGTAFDVTYKDEKTTANLPL 295
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
PG H ++A AA AV T+FGVSL + LS +MR E+ G ++ND YNANP
Sbjct: 296 PGTHNVLDALAALAVGTVFGVSLDKGSCGLSELELSKMRLEVRQGVLGTILINDVYNANP 355
Query: 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+S +A++ +LK+ A K + ILGDM ELGS+ H+++
Sbjct: 356 VSMQASLRVLKERAAGNKTLAILGDMYELGSSAESGHQEV 395
>gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Ochrobactrum anthropi ATCC 49188]
gi|404318793|ref|ZP_10966726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Ochrobactrum anthropi CTS-325]
gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Ochrobactrum anthropi ATCC 49188]
Length = 476
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 128/436 (29%), Positives = 204/436 (46%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT N++ E++ G+ P GI I D+R L P + FFAI G+ FD H+F++ +
Sbjct: 5 LWTSNDMVEAMEGRPFGNLPGGITGISIDSRSLKPG--EAFFAIKGEQFDGHDFVTSAMA 62
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L + +R +R ++ VTGS
Sbjct: 63 AGAGLLVVAEHRLPAFGNSKVPMIVVE-----DVLEALTKLGIASR-ARSKAQIIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + D V E+GM+ EI
Sbjct: 117 VGKTTTKEALRHVLSEVG-KVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 176 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQL 235
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK + PG H+
Sbjct: 236 EELAEKAGVEHIATFGENARSDYRLREVKLHPTCSCMTVKIGTHEAAVK--VGMPGRHIV 293
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 294 QNMLAVLGAADLVGADIAKVMMAMATLSAEGGRGARHVLQHPEGTFTLIDESYNANPTSM 353
Query: 374 RAAIDLLKDIA---CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDMLELG + H + DA ++ + + G
Sbjct: 354 RAALSLLHSTTPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNTLFIGGPDMS 413
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 414 ALKNALPVEIQTEYRQ 429
>gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oceanicaulis sp. HTCC2633]
gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oceanicaulis sp. HTCC2633]
Length = 467
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 138/418 (33%), Positives = 207/418 (49%), Gaps = 29/418 (6%)
Query: 23 NSPIWTINEIAESVNGKILK--WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
+P+WT + AE+ G++ + W G+ DTR L P F A+T Q D H+F
Sbjct: 2 TAPLWTARDAAEASQGRLTEGGWAASGV-SIDTRTLQPG--DLFVALTAQR-DGHDFAQA 57
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
L ++ N + + V+ N L+ L+ + AR R V VGVTGS
Sbjct: 58 ALDKGAAAVLVSNPEACSGPRLVVE-------NVLDGLIRLGEGARR-RSDAVRVGVTGS 109
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK++ K +A G S ++NN GV L+L + A AV EMGM+ KGEI
Sbjct: 110 VGKTSVKEALAAVFIKAG-PAHWSEKSYNNHWGVPLTLARMPEATRHAVFEMGMNHKGEI 168
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
EL RM RP + ++ + +HLE+LGS+E +A AK EIF+ + V V+ ADD L
Sbjct: 169 SELTRMVRPHVAMITKIAPAHLENLGSMEAIADAKAEIFEGLEADGVAVIPADDEFAPRL 228
Query: 261 -TVPRGVRKVF---FGWRRGCDVRLVA-AQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
+G F FG G VR+++ + +GG+G V+ K + F + PG H
Sbjct: 229 MQAVQGSGAGFMLDFGLTPGAAVRILSYDEGPDGGVGRMDVMGKP---MDFRLRLPGAHQ 285
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG----IKIVNDAYNANPI 371
A+NA A A GV +LS P + R ++ I++V+++YNANP
Sbjct: 286 AVNAAGVVAAALGAGVDPDLALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPA 345
Query: 372 STRAAIDLLKDIACNG--KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S RAA +LK +G +++ ++G+MLELG R H + A +D + VG+
Sbjct: 346 SMRAAFGVLKLRKPSGQDRKIAVIGEMLELGPDSRALHAALAEPLITAGVDQVIGVGE 403
>gi|315225027|ref|ZP_07866845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga ochracea F0287]
gi|420158820|ref|ZP_14665632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga ochracea str. Holt 25]
gi|314945002|gb|EFS97033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga ochracea F0287]
gi|394763059|gb|EJF45205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga ochracea str. Holt 25]
Length = 444
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 194/395 (49%), Gaps = 35/395 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + + DK + V+
Sbjct: 15 VSTDTRNITPNS--IYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVF-FGWRRGCDVRL----- 281
E V + KGE++ K ++ NAD+P+ L V+ FG G +V +
Sbjct: 185 EGVIKTKGELYDYLKTHHKTIIANADNPITEALL--ENYNNVYSFGVGEGVNVSVQCLST 242
Query: 282 --VAAQVANGGLGVQVVLEKEREMVKFVIPSPGL---HLA-----INACAAAAVATLFGV 331
V Q A+ L Q E ++ +P + HL N A+ A F +
Sbjct: 243 QPVKIQFADSSL--QTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASVAFGRYFKL 300
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
S + + ++ P RS+LL S ++ DAYNANP S AAID L + +V+
Sbjct: 301 STKAIQKGIESYIPQNNRSQLLQWGSNTVLL-DAYNANPSSMTAAIDNLLSMNSFPNKVL 359
Query: 392 ILGDMLELGSTERESHEKILSYCCD---ACIDLIG 423
ILGDM ELG + H+ I+ + A + LIG
Sbjct: 360 ILGDMFELGDYATQEHQSIVDKLTEHQWAGVYLIG 394
>gi|399046953|ref|ZP_10739141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brevibacillus sp. CF112]
gi|398055103|gb|EJL47195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brevibacillus sp. CF112]
Length = 460
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 189/395 (47%), Gaps = 14/395 (3%)
Query: 40 ILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQV 95
+L G P ++ + DTR L F A+TG D H+F+ ++ NQ
Sbjct: 16 LLLAGSPHLVLSSVHFDTRQL--KAGSLFVALTGGVRDGHDFLLQAAEQGAVAALVSNQ- 72
Query: 96 CNNWDKGFVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154
G G VN TL +A R FS + +TGS+GK+T K ++A L
Sbjct: 73 -EKIPAGLPDEFGLILVNDTLRGFQKLAAAYRKD-FSIPHIAITGSIGKTTVKDIVAHVL 130
Query: 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVV 214
E+ V+++Y N NN +GV LSL+ ++ AVLE+GM+ GEI LA + +P+I V+
Sbjct: 131 EARS-PVYKTYKNLNNHLGVPLSLLQMEPEHQAAVLELGMNHAGEIDLLASLVKPQISVI 189
Query: 215 LNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR 274
+G+SHLE G+ E +A AK E+ + + +LN D + + +++ +
Sbjct: 190 TYIGESHLEFFGTREKIALAKAELLPHTAPDGLVLLNKDSEYLPRIAHLYSGEIMYYSVK 249
Query: 275 RGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLA 334
CD+ + + G V F +P G H +NA A A+A G+S
Sbjct: 250 EPCDLWAEQIEPTDSGTQFDVCFASGERFSAF-LPLHGKHSVLNALPAVAIARRLGMSAE 308
Query: 335 QVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394
Q+ +LS MR E + SR G ++DAYNA+P S AA ++ K+V++LG
Sbjct: 309 QIVEALSTVKLSAMRFEQVPSRHGALYISDAYNASPSSMEAAARTFAELFFARKKVLVLG 368
Query: 395 DMLELGSTERESHEKILSYCCDAC--IDLIGLVGD 427
DM E+G + H + D I+L+ VG+
Sbjct: 369 DMYEMGPQSAQMHAGVGQALTDIADRIELLVTVGE 403
>gi|404481890|ref|ZP_11017119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridiales bacterium OBRC5-5]
gi|404344860|gb|EJZ71215.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridiales bacterium OBRC5-5]
Length = 459
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 207/404 (51%), Gaps = 16/404 (3%)
Query: 28 TINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+A + G+I+ + I D+R +K+ F + G+ DAH+F+ +Y
Sbjct: 5 TIKELAFATGGEIISGNENAVFSNIVIDSR--QADKDSLFVPLVGEKNDAHKFLES-VYD 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
GC I ++ F V N +T +L + Y R S+ + LVGVTGSVGK+
Sbjct: 62 MGCRVAISSKKDIFLKDDFNIVLVN---DTTEALQKLGKYIR-SKLTLPLVGVTGSVGKT 117
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TT+ M+ALAL L VF++ N+N++VGV ++L I+ +I V+E+GMS GE+ +A
Sbjct: 118 TTREMVALALSDL--KVFKTPNNFNSQVGVPITLSRINDE-EIGVIELGMSQFGEMERIA 174
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++ + +V N+G +H+E+L + E++ K I K G V LNAD+ ++ + +
Sbjct: 175 KIVNCDCALVTNIGTAHIENLHTRENIRAEKFHIMDGMKNGSVVFLNADNDMLFDPPKEK 234
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
G+ +F + A + + + V+ + G H NA AA A
Sbjct: 235 GIEYKYFSAKGNTLCDYYATDIVFNNAMPEFTAHIGEKKVRVHLNVFGEHQISNALAAIA 294
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
VA + +S+ L F R EL+ + + +++D YNA+P S +A+I +LKD
Sbjct: 295 VANHYNLSVESAAKHLEEFRGFSHRQELIKLKE-LTVIDDTYNASPDSMKASISILKDFN 353
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDAC-IDLIGLVGD 427
+++ IL DM ELG+ ER H +I + + +D + VG+
Sbjct: 354 AQ-RKIAILADMKELGTDERILHREIGDFINENVKLDAVFTVGE 396
>gi|390451980|ref|ZP_10237540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitratireductor aquibiodomus RA22]
gi|389660299|gb|EIM71995.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Nitratireductor aquibiodomus RA22]
Length = 474
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 200/414 (48%), Gaps = 19/414 (4%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT + ++ G+ L I I DTR L P FFAI G+ FD H+F +
Sbjct: 2 SALWTHEALVQATGGRPLGQPVAAITGISIDTRTLQPG--DAFFAIQGERFDGHDFATAA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ V V+ G + V + ++ ++ AR R +V VTGSV
Sbjct: 60 MAAGASVLVVSEGKLPAL--GRLGVPKVVVPDVQKAMEDLGRAAR-LRSRAKIVAVTGSV 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK+M+ A + G +V + ++NN GV L+L + D A+ E+GM+ EI
Sbjct: 117 GKTSTKNMMRQAFSACG-SVHAADRSFNNHWGVPLTLARMPADCDFAIFEIGMNHPDEIR 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVA 258
L +M RP I VV V +HL S+E++ARAKGEIF+ G ++N DD ++
Sbjct: 176 PLVKMVRPHIAVVTLVAAAHLGFFKSVEEIARAKGEIFEGVVKGGAALVNRDDKRWKTLS 235
Query: 259 NLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
L GV+ + FG D+RL+ A+ V ++ E V+ + +PG H+
Sbjct: 236 ALAEEAGVKTIAGFGENARADIRLMHAECGAQSSTFAVKIDGEETEVR--LGAPGRHMVQ 293
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPISTR 374
NA A L + + ++L +F R L V ++++++NANP S
Sbjct: 294 NALATLGAVHLAQADVRKAAMALGSFGAEAGRGARHRLKVDGGTFTLIDESFNANPASMA 353
Query: 375 AAIDLLK--DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
AA DLLK D+ G+R+ ILGDM ELGS + H + A D + L G
Sbjct: 354 AAFDLLKRADLGDGGRRIAILGDMAELGSHAEKLHAGLADLVTGAGTDCVYLAG 407
>gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, partial
[Staphylococcus caprae C87]
gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus caprae C87]
Length = 378
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 189/355 (53%), Gaps = 19/355 (5%)
Query: 60 KNQWFFAITGQHFDAHEFISPELY-GKGC-VGVIGNQVCNNWDKGFVQVEGNGNVNTLNS 117
K+ F G++ D H F++ L G G G ++ + + + VE +TL +
Sbjct: 38 KDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELNEDIEGPIIWVE-----DTLKA 92
Query: 118 LVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL 176
L ++A Y + + ++ VTGS GK+TTK MI L + V ++ GN+NN +G+ L
Sbjct: 93 LQDLAKAYLK--YVNPKVIAVTGSNGKTTTKDMIESVL-TTEFKVKKTQGNYNNEIGMPL 149
Query: 177 SLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKG 236
+++ +D +I++LEMGMSG EI L+ +A P+I V+ N+G+SH++ LGS E +A+AK
Sbjct: 150 TILDLDEDTEISILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSREGIAKAKS 209
Query: 237 EIFQESKLGDVCVLNADDPLV-ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295
EI K + + D+PL+ ++L R + G + + G+ +
Sbjct: 210 EITIGLKENGTFIYDGDEPLLKSHLEQLNKARLISVGLGNSNTLVCHVDDIETEGIAFTI 269
Query: 296 VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS 355
++E F +P G H NA A A+ G+S + ++++ MR E +
Sbjct: 270 ---NDKE--SFTLPILGTHNMKNATIAIAIGHELGLSYETIKDNINHVKLTGMRMERHQT 324
Query: 356 RSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
+ + ++NDAYNA+P S +AAID L + G++++IL D+LELG + HE++
Sbjct: 325 TNNVTVINDAYNASPTSMKAAIDTLS--SMEGRKILILADVLELGENSQSMHEEV 377
>gi|393766842|ref|ZP_10355395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium sp. GXF4]
gi|392727622|gb|EIZ84934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium sp. GXF4]
Length = 494
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 197/418 (47%), Gaps = 36/418 (8%)
Query: 26 IWTINEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL-Y 83
+WT +++ + G+++ P G DTR L FFAI G+ D H+F++ L
Sbjct: 15 LWTRDDLEAATGGRLIGEDRPIGGASIDTRTL--ELGDLFFAIRGEARDGHDFVADALKR 72
Query: 84 GKGCVGVIGNQVCNNWDKGFV-QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G G V + + G V V G L ++ + AR +R +V VTGSVG
Sbjct: 73 GAGAAVVSEARAADLSAHGPVLAVPDAGADPVLTAMTRLGEAAR-ARTDAQVVAVTGSVG 131
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+ TK + L G S ++NN GV L+L + R V E+GM+ EI+
Sbjct: 132 KTGTKEALRHVLAGQG-ETHASAASYNNHWGVPLTLARMPRTTRYGVFEIGMNHPAEIVP 190
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD----DPLVA 258
L RP+I ++ V H+E S+ +A AKGEIF + G V ++N D + L+A
Sbjct: 191 LTAQVRPDIALITTVEPVHIEHFASVSAIADAKGEIFSGLEPGGVAIINRDTATFERLLA 250
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI---P------ 309
+ R R V FG DVR AQ +VL + +V V+ P
Sbjct: 251 HARASRAGRVVSFGEHPEADVR---AQT--------IVLRPDLSVVDAVVMGQPVTYKLG 299
Query: 310 SPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE---LLVSRSGIKIVNDAY 366
+ G H A+N+ AV G LA+ +SL+ +P R E L + +V+++Y
Sbjct: 300 TAGRHTALNSLGVMAVIHALGADLAEAALSLAGLAPPVGRGERTALEIDGGTAYLVDESY 359
Query: 367 NANPISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
NANP S RAAI L I G+R+ +LGDMLELG+ + H + A IDL+
Sbjct: 360 NANPASVRAAIATLAGIETGPRGRRIAVLGDMLELGAASPDLHRGLAEAIEAARIDLV 417
>gi|383751549|ref|YP_005426650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia slovaca str. D-CWPP]
gi|379774563|gb|AFD19919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia slovaca str. D-CWPP]
Length = 449
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 190/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L++ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQNDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSAKTSAELILYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|337288493|ref|YP_004627965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermodesulfobacterium sp. OPB45]
gi|334902231|gb|AEH23037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Thermodesulfobacterium geofontis OPF15]
Length = 471
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 194/369 (52%), Gaps = 19/369 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR++ P FFA+ G+ FD HEF + KG G+ V + + KGF E
Sbjct: 32 ISTDTRVIKPG--YLFFALKGEKFDGHEFYKDAI-EKGAKGL----VISRFPKGFKIEEI 84
Query: 109 NGNV------NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
+ +TL +L ++A + R + + + V +TGS GK+TTK + + + S
Sbjct: 85 PKTISIILVKDTLKALGDLASFWR-GKLNSIFVAITGSCGKTTTKEL-SYNIISKFFKTS 142
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ N+NN +GV L+L+ I ++ +LE+G + KGEI L+++ +P I V+ ++ +HL
Sbjct: 143 KNQANYNNLIGVPLTLLSIKEDTEVVILELGTNQKGEIERLSQIVKPHISVITSIYPAHL 202
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLV 282
E L S+E V K +F+ + + + N D ++ P K+ FG+ D+ +
Sbjct: 203 EGLNSIEGVLEEKISLFKNTYKDGILIYNFDQEILRKRVEPFSQNKLSFGFDENADLSIK 262
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+ + +++ +K ++ I + G + +N A+ VA + L ++ +
Sbjct: 263 NLVFSENKIQGEIIFKKSSYPLE--IENIGKYNLLNLLASLCVAISLKLDLKEIVPLVGK 320
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN-GKRVVILGDMLELGS 401
P+ R ++ + +++D YNANP S +AA++ LK+I+ + K++VILGDM ELG
Sbjct: 321 EIPLYKRFKIF-EKENFLVIDDTYNANPGSVKAALEFLKEISKDYEKKIVILGDMKELGK 379
Query: 402 TERESHEKI 410
+ H++I
Sbjct: 380 DSEKFHKEI 388
>gi|419768507|ref|ZP_14294629.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-250]
gi|383359871|gb|EID37281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus aureus subsp. aureus IS-250]
Length = 392
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 163/294 (55%), Gaps = 9/294 (3%)
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
++ VTGS GK+TTK MI L S V ++ GN+NN +G+ L+L+ +D +I++LEMG
Sbjct: 49 VIAVTGSNGKTTTKDMIESVL-STEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMG 107
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
MSG +I L+ +A+P+I V+ N+G+SH++ LGS E +A+AK EI K + + + D
Sbjct: 108 MSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGD 167
Query: 254 DPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
+PL+ ++ + + + G V N G+ + +KE + +P G
Sbjct: 168 EPLLKPHVNQVKNAKLISIGLNSDNTYTCHMNDVKNEGIHF-TINQKEH----YHLPILG 222
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
H NA A A+ G++ + ++ N MR E S + + ++NDAYNA+P S
Sbjct: 223 THNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTS 282
Query: 373 TRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+AAID L G++++IL D+LELG + H+++ Y D ID++ G
Sbjct: 283 MKAAIDTLS--GMKGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYTFG 334
>gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 345
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 176/344 (51%), Gaps = 24/344 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + + F + G+ FD H + L K G W + +
Sbjct: 11 VFTDSRQI--KQGSLFVPLVGERFDGHAYAESVL--KDGAG------ATLWQRDRGEAPA 60
Query: 109 NGNV---NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
+ +TL +L +A A + +VG+TGS GK+TTK M+ L S V ++
Sbjct: 61 GAVIVVDDTLAALQTLA-EAYLAEVGCRVVGITGSNGKTTTKDMV-YTLLSTTYKVHKTG 118
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN +G+ L+++ + +IAVLEMGMSG+ EI L+++ARP++ V+ N+G++HL L
Sbjct: 119 GNFNNHIGLPLTILEMPADTEIAVLEMGMSGRHEIERLSQIARPDVAVITNIGEAHLLQL 178
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLV------ANLTVPRGVRKVFFGWRRGCDV 279
GS ++ARAK EI K G + + + D+PL+ A P G+ FG D
Sbjct: 179 GSRHEIARAKVEIISGMKPGGLLIYHGDEPLIPMVLGEAETVKPEGLGTFTFGLDHSNDD 238
Query: 280 RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGIS 339
+ G+ +L E + +P G H IN AA AVA FG++ +
Sbjct: 239 YPTGMMFHSKGIIFTSLLHPEEGL---DLPLLGQHNVINCLAALAVARHFGITEENIRTG 295
Query: 340 LSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
L+ MR E +V+ SG+ I+NDAYNA+P S +AAID L +
Sbjct: 296 LTGLHLTGMRIEQIVAPSGLTILNDAYNASPTSMKAAIDALHSL 339
>gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rickettsia peacockii str. Rustic]
gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rickettsia peacockii str. Rustic]
Length = 449
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 189/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNITMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSAKTSAELILYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|420148920|ref|ZP_14656105.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 335 str. F0486]
gi|394754409|gb|EJF37799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Capnocytophaga sp. oral taxon 335 str. F0486]
Length = 444
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 188/380 (49%), Gaps = 32/380 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + DK + V+
Sbjct: 15 VSTDTRNITPNS--IYFALKGASFNGNTFTQEALAKGACYAVIDDPAYYIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVF-FGWRRGCDVRL----- 281
E V + KGE++ K ++ NAD+P+ L V+ FG G +V +
Sbjct: 185 EGVIKTKGELYDYLKTHHKTIIANADNPITEALL--ENYNNVYSFGVGEGVNVSVRCLST 242
Query: 282 --VAAQVANGGLGVQVVLEKEREMVKFVIPSPGL---HLA-----INACAAAAVATLFGV 331
V Q A+ L Q E ++ +P + HL N A+ A F +
Sbjct: 243 QPVKIQFADSSL--QTTTEGFPANIEGFSDTPTVATSHLVGSYNFTNIAASVAFGRYFKL 300
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
S + + ++ P RS+LL S ++ DAYNANP S AAID L + + +V+
Sbjct: 301 STKAIQKGIESYIPQNNRSQLLQWGSNTVLL-DAYNANPSSMTAAIDNLLSMNSSSNKVL 359
Query: 392 ILGDMLELGSTERESHEKIL 411
ILGDM ELG + H+ I+
Sbjct: 360 ILGDMFELGDYATQEHQSIV 379
>gi|381209806|ref|ZP_09916877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lentibacillus sp. Grbi]
Length = 456
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 191/369 (51%), Gaps = 26/369 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVE- 107
+ TD+R K F + G++FD H ++ + + +G + WDK E
Sbjct: 28 VTTDSR--RKLKKSLFIPLAGENFDGHHYMK-DAFDQGAAAAL-------WDKHKALPES 77
Query: 108 --GNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161
+ V +TL ++ +A R + + V++GVTGS GK+TTK +IA + S
Sbjct: 78 LPADFPVFFVNDTLTAMQELAKAYR-KKVNPVVIGVTGSNGKTTTKDIIASVVGS-SYKT 135
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221
+ GN NN+VG+ L+++ + + V+EMGM+ GEI L ++A+P V+ N+G+SH
Sbjct: 136 HHTEGNLNNQVGLPLTILSMPLDTEALVVEMGMNHFGEIETLTKIAQPNYAVITNIGESH 195
Query: 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281
+E LGS E +ARAK EI + + +++ D+PL+ + V K G+ DV
Sbjct: 196 IEFLGSREGIARAKLEIIKGTTKDGYLLIDGDEPLLRQVHQREHVIKC--GYHTNNDV-- 251
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
+ N + Q + + + IP G H A+NA A + L ++ V +L+
Sbjct: 252 ---TIRNINITRQSTQFELSDGGSYTIPLLGSHHALNASFAITIGRLLNIATDNVKQALT 308
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
MR EL+ ++G I+NDAYNA+P S +A+I+ +K + ++V++LGD+ ELG
Sbjct: 309 GLELTSMRFELMNGKNGSSIINDAYNASPTSMKASINAVKHLDGFHQKVLVLGDVFELGQ 368
Query: 402 TERESHEKI 410
+ H +
Sbjct: 369 NSKPLHRSV 377
>gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnoanaerobaculum saburreum DSM 3986]
gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnoanaerobaculum saburreum DSM 3986]
Length = 457
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 201/392 (51%), Gaps = 23/392 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ--VCNNWDKGFVQV 106
I D+R NKN F + G+ DAH+F+ +Y GC I ++ + + D V V
Sbjct: 29 IVIDSR--EANKNSLFVPVVGEKNDAHKFLES-VYDAGCRVAISSRKDIFSKPDFNIVLV 85
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +T+ +L ++ Y R S+ S LVGVTGSVGK+TT+ M ALAL L VF++
Sbjct: 86 E-----DTIKALQSLGIYLR-SKLSLPLVGVTGSVGKTTTREMTALALSDL--KVFKTPN 137
Query: 167 NWNNRVGVALSLIGIDRAVD--IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+N+++GV ++ I R D I ++E+GMS GE+ +A++ + ++ N+G +H+E+
Sbjct: 138 NFNSQLGVPVT---ISRITDEEIGIIELGMSLFGEMERIAKIVGCDSAIITNIGTAHIEN 194
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAA 284
L + E++ K I K G V LNAD+ +++N G+ FF + D A
Sbjct: 195 LHTKENIRSEKFHIMDGMKAGSVVFLNADNDMLSNPPKREGIIYKFFSAKGNTDCDYYAT 254
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ + +K + G H NA A AVA + + + LS+F
Sbjct: 255 DIVFHNAMPEFTAHICDRSIKVTLNVFGEHQVSNALVALAVAHHYNLDIESASKHLSSFR 314
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
R E L+ + +++D YNA+P S +A++ +LKD +++ +L DM ELG+ E
Sbjct: 315 GFSHRQE-LIELKNLTVIDDTYNASPDSMKASLSILKDFRAR-RKIAVLADMKELGADEV 372
Query: 405 ESHEKILSYCCDACI-DLIGLVGD--RVVVQC 433
+ H ++ + + D + VG+ R +V C
Sbjct: 373 KFHREVGEFISENVKPDAVFSVGELAREIVNC 404
>gi|347526974|ref|YP_004833721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Sphingobium sp. SYK-6]
gi|345135655|dbj|BAK65264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Sphingobium sp. SYK-6]
Length = 461
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 194/415 (46%), Gaps = 24/415 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+P+WT IAE+ G + D+R +AP F A+ G+H D H+FI L
Sbjct: 2 TPLWTSEAIAEATGGTANSSFDVTGVAFDSREVAPG--DLFVALRGEHADGHDFIPMALA 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
++ +V FV+V + L ++ +R R ++GVTGS GK
Sbjct: 60 AGAGGLLVEREVNGP----FVKV-----ADAARGLEDLGRASRR-RTGARIIGVTGSAGK 109
Query: 144 STTKSMIALALESLGVN-VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
+ TK + A + + +S ++NN VGV LSL + V EMGM+ +GE+
Sbjct: 110 TGTKEALYRAFDRMSFGGAHRSLKSYNNHVGVPLSLARMPATTRYGVFEMGMNHEGELRA 169
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA---N 259
L+RM RP + +V + +H+E GS E +A AK EIF+ ++ AD P + N
Sbjct: 170 LSRMVRPHVAIVTTIAPAHIEYFGSEEKIADAKAEIFEGLTSDGTAIIPADSPHASRLYN 229
Query: 260 LTVPRGVRKVFFGWRRGCDVRLV-AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
+ R V FG R G DVR+V A A GG V L R + F + PG H N
Sbjct: 230 VAARHAARIVTFGLRAGADVRVVEEAPSARGGTLVTAQLRTAR--LSFTVGMPGRHWVSN 287
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG----IKIVNDAYNANPISTR 374
A A A G LAQ G++L+ + + R R+ +++++YNANP S
Sbjct: 288 ALAVLAAVEAVGGDLAQAGLALAEMNGLPGRGARRTLRTADGGEALLIDESYNANPASMA 347
Query: 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
A + L + +R+ +LG M ELG+ H + A + L LVGD +
Sbjct: 348 ATLAQLGEERGE-RRIAVLGAMKELGALSESLHRGLADAVRAAGVSLAVLVGDEM 401
>gi|33603177|ref|NP_890737.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Bordetella bronchiseptica RB50]
gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica RB50]
Length = 945
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/385 (32%), Positives = 185/385 (48%), Gaps = 18/385 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ- 105
G + TDTR + + + F A++G++FD H+++ C V+ + V D Q
Sbjct: 508 GAVSTDTRRI--GRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA---DVALPQL 562
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN--VFQ 163
V G+ TL +L M R+S F+ +V VTGS GK+TTK MI+ L +
Sbjct: 563 VLGD----TLAALGRMGTAWRSS-FTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLA 617
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +GV L+L+ + AV E+GM+ GEI LA MA P + +V N H E
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQE 677
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLV 282
+ ++E VA G + V V D+P A G R+V FG + G DV
Sbjct: 678 FMHTVEAVAHENGAVISALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQPGLDV--Y 735
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A +V G Q L + +P PGLH NA AA A G L +L+
Sbjct: 736 AERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAG 795
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F V R + G +++D YNANP S RAAID+L + R ++LGDM E+G
Sbjct: 796 FQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPA--PRALVLGDMGEVGDN 853
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
H ++ Y + ID + +G+
Sbjct: 854 GPAMHREVGDYAREHGIDALITLGE 878
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 146/401 (36%), Gaps = 43/401 (10%)
Query: 24 SPIWTINEIAESVNGKILKW-----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
SP +N + + L W P + D+R + P F A G D +F+
Sbjct: 2 SPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGD--VFVACPGLASDGRQFM 59
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L +G ++ Q + TL + Y R S+ V V +T
Sbjct: 60 DQAL-ARGASAILYETEGAPVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSV-VAIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
G+ GK++ +A L +G S G + SL G D+ + ++
Sbjct: 118 GTNGKTSCTQWLAQVLTRMG-KPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMR 176
Query: 199 EI-------------LELARMARPEIRVV--LNVGDSHLESLGSLEDVARAKGEIFQESK 243
+E R+ I V N+ HL+ G+++ +AK +FQ
Sbjct: 177 AAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPD 236
Query: 244 LGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKE 300
L V+NADDP L ++P ++ + DV Q A+G + + + E
Sbjct: 237 L-QAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGE 295
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR---------SE 351
++V ++ G H N A + G L Q+ L+ SPV R
Sbjct: 296 AQIVTRLL---GQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQH 352
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNGKRVV 391
L G +V D Y P + A+ L+ +A G R+V
Sbjct: 353 LTAGAQGALVVVD-YAHTPDALARALTALRPVAQARGGRLV 392
>gi|421734358|ref|ZP_16173431.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium bifidum LMG 13195]
gi|407077649|gb|EKE50482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium bifidum LMG 13195]
Length = 519
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 141/436 (32%), Positives = 211/436 (48%), Gaps = 46/436 (10%)
Query: 28 TINEIAESVNGKIL--------KWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHE 76
T+ ++AE+V G+++ + G + + D+R + + F AI G+ D H+
Sbjct: 11 TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQV--REGSVFVAIAGERVDGHD 68
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLV 135
F++ V ++ ++V D Q+ V+ L L AR + + L+
Sbjct: 69 FVARAGESGAVVALVQHEV----DAPVAQIVVPDTVDALGLLAKANIAARRAVGTPFTLI 124
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK+TTK ++A L +LG V G++NN +G+ L+ + + R V EMG S
Sbjct: 125 GITGSVGKTTTKDLMAALLSTLGPTV-APVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 183
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L +A P+I VVL VG +HL GS+E +A+AK EI Q + VLNADD
Sbjct: 184 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 243
Query: 256 LVANLT--VPRGVRKVFFGWRRGCDVRLVAAQVANG---GLGVQVVLEKEREMVKFVIPS 310
VA + P+G VF+ G D A A+G L V + + F +
Sbjct: 244 HVAAMAPLAPQG--HVFWFGMDGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 301
Query: 311 P------------GLHLAINACAAAAVATLFGVSLAQVGISL---SNFSPVQMRSELLVS 355
G H +NA AAA+VA L GV L + +L S SP +M V
Sbjct: 302 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVS-TVR 360
Query: 356 RSGIK--IVNDAYNANPISTRAAIDLLKDIACNGK--RVVILGDMLELGSTERESHEKIL 411
R G+ +++D++NANP S RA +D L + R+ +LG MLELG E HE I
Sbjct: 361 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDADPYRIAVLGAMLELGGDESALHEGIG 420
Query: 412 SYCCDACIDLIGLVGD 427
Y +D + VG+
Sbjct: 421 EYAAGLPVDAVIAVGN 436
>gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus pseudintermedius HKU10-03]
gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Staphylococcus pseudintermedius HKU10-03]
Length = 454
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 194/384 (50%), Gaps = 23/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCNNWDKG---FV 104
+ D+R + Q F G++ D H++ L G G + G FV
Sbjct: 29 VTIDSRHI--QHGQLFIPFKGENVDGHQYSEQALNDGAGATFFQRDSTLTAPTNGPVVFV 86
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+ NTL +L +A A + ++ VTGS GK+TTK M+ L S V ++
Sbjct: 87 E-------NTLTALQQLAK-AYLQHVAPTVIAVTGSNGKTTTKDMLENVL-SGKFRVQKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+++ ++ ++++LEMGMSG EI L+ +A+P+ V+ N+G+SH++
Sbjct: 138 QGNYNNEIGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPDFAVITNIGESHMQD 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI K + + D+PL+ ++ +V G D++
Sbjct: 198 LGSREGIAKAKFEIVSGLKSEGYFIYDGDEPLLKPHVETLTSAHQVSVGLSAKNDMQCQM 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
G+ V + V + I G H NA A AV + G++ Q+ L++
Sbjct: 258 VSHLEEGITFTV-----NDDVTYTISILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSL 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR + ++ +G ++NDAYNA+P S +AAID L + G+ +++LGD+LELG
Sbjct: 313 KLTDMRMQKFMAPNGAMVINDAYNASPTSMKAAIDTLSHM--KGETILVLGDVLELGEQS 370
Query: 404 RESHEKILSYCCDACIDLIGLVGD 427
R+ HE + SY + I + G+
Sbjct: 371 RQLHESVGSYLENKGIHQLYTFGE 394
>gi|451942220|ref|YP_007462857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamin
opimelate--D-alanyl-D-alanine ligase [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
gi|451901607|gb|AGF76069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamin
opimelate--D-alanyl-D-alanine ligase [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
Length = 473
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 207/417 (49%), Gaps = 22/417 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ +W + +++G ++ P + D+R L + FF I G H D H+F + +
Sbjct: 2 TALWDKQALVSAIDGFVVGSMPESFSGVSIDSRTL--TEGDIFFCIKGHHLDGHDF-AAQ 58
Query: 82 LYGKGC-VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
Y +G V V+ + +K + +V L +L +A AR R ++ +TGS
Sbjct: 59 AYARGAGVLVVAESHLTDMEKISAPLLVVSDV--LQALEQLAQAARK-RSRAKIIAITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + ++G V + + NN GV L+L + D + E+GM+ K EI
Sbjct: 116 VGKTTTKEALKQVFATVG-KVHANLASLNNHWGVPLTLARMPMESDYGIFEIGMNHKDEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L ++ P + ++ ++ H+ +LE++A AK EIF+ + +LNAD + L
Sbjct: 175 RPLVKLVYPHVALITHISAGHMGYFKNLEEIADAKAEIFEGLDEEGIAILNADHDFFSYL 234
Query: 261 TVPR---GVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
GV+K+ FG CD + ++ ++V + + ++K I +PG H+
Sbjct: 235 VQKAKQWGVKKILSFGETGNCDYQARDIRLLTDYSSMRVHISGQDRLIK--IGAPGRHIL 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSG-IKIVNDAYNANPIS 372
N+ AV GV L +V SLS FS + +R L + G +++++YNANP S
Sbjct: 293 QNSLGVLAVCDAIGVDLERVLRSLSCFSLQKGRGIRYRLSLPSGGEFHLIDESYNANPAS 352
Query: 373 TRAAIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
RAA+DLL + GKR+ ILGDMLELG+ + H ++ + DL+ L G+
Sbjct: 353 MRAALDLLASGPVGVGGKRIAILGDMLELGTYSEKLHRDLVKPVSLSGADLVFLFGE 409
>gi|406666249|ref|ZP_11074017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus isronensis B3W22]
gi|405385788|gb|EKB45219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bacillus isronensis B3W22]
Length = 456
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 178/323 (55%), Gaps = 17/323 (5%)
Query: 117 SLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA 175
+L MA CY RN +G+TGS GK+++K ++A AL S V ++ GN+NN++G+
Sbjct: 89 ALQKMAECY-RNEH-QATFIGITGSNGKTSSKDILAGAL-SPYFKVQKTIGNFNNQLGLP 145
Query: 176 LSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAK 235
++++ +D +++VLEMGMSG GEI L ++ARP ++ N+G++H++ LGS E +A+AK
Sbjct: 146 ITILQLDEDTEVSVLEMGMSGFGEIEFLTKLARPHYAIITNIGEAHMQDLGSREGIAKAK 205
Query: 236 GEIFQESKLGDVCVLNADDPLVANLTVPR-GVRKVFFGWRRGCDVRLVAAQVANGGLGVQ 294
EI + + + D+PL+ NL ++ FG+ + ++ L A+Q+ G
Sbjct: 206 FEIVKGLSEEGILFYDGDEPLLQNLVAKTPHLKTQAFGFSQ--ELNLAASQIKATAQGSS 263
Query: 295 VVLEKEREMVK--FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
+E +++ F I G H N +A V+ G++ Q+ +L MR +
Sbjct: 264 FHVEG---LIQGDFFISVLGEHQVKNTLSAMLVSKSLGLTDEQIREALKKVVLTDMRMQ- 319
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
LV + +NDAYNA P S AAI ++ ++ ++LGDMLELG+ E++ HE I
Sbjct: 320 LVPVGDLLFINDAYNAAPTSMHAAIQFVEQTTIRNEKWLVLGDMLELGNEEKKMHEGIAG 379
Query: 413 YCCDACIDLIGLVGDRVVVQCKW 435
+ I + L G R+ KW
Sbjct: 380 HIHPEEISYVCLYGPRM----KW 398
>gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas noxia ATCC 43541]
gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Selenomonas noxia ATCC 43541]
Length = 469
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 188/366 (51%), Gaps = 12/366 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F A+ G+ FD +F + L ++G + + +K + +G
Sbjct: 31 ITTDTRKI--SSGDLFVALRGEKFDGADFAAEALERGAAAVIVGTPLSTSAEKALKKAKG 88
Query: 109 N--GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ L + +A +A +F ++ +TGS GK+TTK + A L G V ++
Sbjct: 89 TVLKADDGLRAYQAIA-HAWRMKFDIPVIAITGSNGKTTTKELTAAVLSGRG-KVCRTAE 146
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN VG+ L+L+GI AV+E+GM G G+I LA +A P I +V NV + H+E LG
Sbjct: 147 NYNNEVGLPLTLLGIVPEDFAAVVEIGMRGLGQIAALAPVAAPTIGIVTNVCEVHMELLG 206
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRGVRKVFFGWRRGCDVRLVAA 284
S+E++A+AK E+ + G +LNADD VA + GVR + + DVR A
Sbjct: 207 SIENIAKAKAELVEAIPSGGTVILNADDSRVAAMRSFAADGVRILTYAIDADADVRAEAL 266
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
Q A G V ER ++ + PG H N AA A G++ ++ L N
Sbjct: 267 QCAADGSRFMVTYANERH--EYAVSLPGRHNVSNTLAALAAGFALGLTPQEMQAGLRNIE 324
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
+MR E S +NDAYNA+P S AA++ + G+++ +LGDMLELG+
Sbjct: 325 GTKMRYE-TESVGAWMFINDAYNASPSSMHAALETTAAL-YPGRKIAVLGDMLELGAAAE 382
Query: 405 ESHEKI 410
E+H I
Sbjct: 383 EAHRMI 388
>gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
piezotolerans WP3]
Length = 455
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 124/405 (30%), Positives = 204/405 (50%), Gaps = 21/405 (5%)
Query: 27 WTINEIAESVNGKILKWG-PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
++ EIAE + GK+L + +D+R A + F A+ G +FD H F+
Sbjct: 4 LSLTEIAEHLGGKLLGDDFSIEQVSSDSR--AVDGKTLFVALKGDNFDGHNFVGSAAENG 61
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
++ ++ + + V N+ ++ ++ Y R + + V V +TGS GK++
Sbjct: 62 ARAVLVERELPDAVAQIIVD-------NSQRAMGDIGAYVRE-KLAPVCVALTGSNGKTS 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
K M+A L S V + GN+NN +GV L+L+ + V E+G + GEI +
Sbjct: 114 VKEMVATIL-SQQHQVLYTAGNFNNEIGVPLTLLRLQAGDQFGVFELGANHAGEIDYTSS 172
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPR 264
+ +P + +V NV +HLE GSL VA+AK EIF + V+NADD A L +
Sbjct: 173 LVKPSVAMVNNVASAHLEGFGSLAGVAKAKSEIFNHVATDGIAVINADDAFAAVMLAASQ 232
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGG-LGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
+ ++ F DV+ A GG + + E V V+P G H +NA AA+
Sbjct: 233 HLTQLTFAIDAAADVKATALHADKGGRYSFDISYADQVESV--VLPLAGRHQVLNALAAS 290
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG-IKIVNDAYNANPISTRAAIDLLKD 382
++ G+SL+ + LS PV+ R +L +R G + +++D+YNANP S AAID L++
Sbjct: 291 SICLALGMSLSFINQGLSLLEPVKGR--MLPTRLGRVTVIDDSYNANPASVGAAIDWLQE 348
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
I+ G R ++LGD+ ELG H ++ + +D + VG+
Sbjct: 349 IS--GNRCLVLGDLGELGDNAALLHNELGAEAKAKGVDALFCVGE 391
>gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium dentium ATCC 27679]
gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium dentium ATCC 27679]
Length = 493
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 138/424 (32%), Positives = 218/424 (51%), Gaps = 34/424 (8%)
Query: 29 INEIAESVNGKILKWGPPGII---------CTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
+ EI ++V+G+++ GI C+D+R + + F AI G+ D H+F+S
Sbjct: 6 LAEIEQAVHGRLV--AAEGIASNGAMATSACSDSRQV--REGSVFVAIAGERVDGHDFVS 61
Query: 80 PELYGKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLVGV 137
++ +G V ++ ++V D G Q+ + V L L R + S ++G+
Sbjct: 62 -KVGAQGAVAALVDHEVA---DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGI 117
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK ++A L ++G V G++NN +G+ L+ + ++ V EMG +
Sbjct: 118 TGSVGKTTTKDLMASLLSAMGETV-APVGSFNNEIGLPLTALKVNAGTRFLVAEMGANHV 176
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L + P+I VVL VG +HL GS E +A+AK EI + G V VLNA+D V
Sbjct: 177 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEHV 236
Query: 258 ANLTVPRGVRKVFFG--WRRGCDVRLVAAQVANGGLGVQVVLE---KEREMVKFVIPSPG 312
A ++ ++FG RR D R+VAA+ E E E K + G
Sbjct: 237 AAMSGIAPGEVLWFGLPQRRTPD-RMVAAENVRCDELDHPSFELRDAEGECAKVNLGICG 295
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSN---FSPVQMR-SELLVSRSGIKIVNDAYNA 368
+H +NA AAA VA G+ L ++ L++ SP +M S ++ + +++D++NA
Sbjct: 296 MHNVMNALAAATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNA 355
Query: 369 NPISTRAAIDLLKDIACNGK----RVVILGDMLELGSTERESHEKILSYCCDACIDLIGL 424
NP S +A +D L N + R+ +LG MLELG ER HE++ SY +D +
Sbjct: 356 NPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVDALIA 415
Query: 425 VGDR 428
VG R
Sbjct: 416 VGSR 419
>gi|403669623|ref|ZP_10934814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kurthia
sp. JC8E]
Length = 453
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 208/409 (50%), Gaps = 24/409 (5%)
Query: 28 TINEIAESVNG-KILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
TINEIA +N + + + +TR L K F G++ + H++++ + + G
Sbjct: 4 TINEIAAWLNADHVAEDAIVTGVSINTRTL--QKGDLFIPFRGENTNGHKYVA-QAFENG 60
Query: 87 CVGVIGNQVCNN--WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ + N D + V+ ++ +L MA R + + VTGS GK+
Sbjct: 61 AAAALWQKDEPNPPADLPLIFVD-----DSEEALQQMARAYR-AEHQATFIAVTGSNGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+TK +IA L S V ++ GN+NN++G+ L+L+G+D AVLEMGM G +I L
Sbjct: 115 STKDLIAGTL-SPYYKVQKTEGNYNNQLGLPLTLLGLDEDTQFAVLEMGMDGYHQIELLT 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++A+P+ ++ N+G++H+E+LGS E +A+AK EI Q + + D+PL+ L
Sbjct: 174 KLAQPKYAIITNIGEAHMEALGSREGIAKAKFEIVQGLQQDGKFFFDGDEPLLRPLVEAA 233
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLG----VQVVLEKEREMVKFVIPSPGLHLAINAC 320
+ V FG D L A+ + G V V+E +F I G H N
Sbjct: 234 NLNTVSFGLEESDD--LFASNIVEDQRGSHFDVHGVMED-----RFFISVLGRHQVKNTL 286
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
A +A G+S Q+ SL MR +L+ + +G+ +NDAYNA P S RAA++ +
Sbjct: 287 IAILIAKEIGLSNDQIRESLKQVQLTNMRMQLIEADNGMLFINDAYNAAPTSVRAALNFV 346
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+ + V+LGDMLELG+ ER+ HE I + I+ + L G R+
Sbjct: 347 EHATLRPDKWVVLGDMLELGTNERQFHENIANDLNTEAINHVCLYGPRM 395
>gi|383315698|ref|YP_005376540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Frateuria aurantia DSM 6220]
gi|379042802|gb|AFC84858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Frateuria aurantia DSM 6220]
Length = 452
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 16/379 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ DTR + P F AI G+ D H+F L G +G V QV
Sbjct: 25 VTIDTRSIQPGN--LFVAIKGERVDGHDF----LAAAKASGAVGALVTRPVAVDLPQVLV 78
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L L + N + +VG+TGS GK+T KS++A L G S GN+
Sbjct: 79 DDATLALGDLASSVRAQSNVQ----VVGITGSNGKTTVKSLVAAILALQGRTHVNS-GNY 133
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ L+L+ + + + AVLEMG G+I LA +ARP + +V N+ +HL +G+L
Sbjct: 134 NNELGLPLTLLAMPQDCEYAVLEMGAGKPGDIDYLAAIARPTVALVNNIAPAHLARMGTL 193
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVA-NLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E VA KG I+Q V V+NAD+P L + R++ FG + DV A ++
Sbjct: 194 EGVAETKGAIYQHLPADGVAVINADEPFARFFLGLAGSRRQLSFGLEQKADVTATAIELH 253
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
G Q+ L E ++ +P PG H NA AAAAV GV LA++ L+ V
Sbjct: 254 ASGSRFQLHLGDESMAIE--LPLPGRHNVANALAAAAVTAALGVPLARIAQGLAQAPAVA 311
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R G +++D+YNANP S RAAID L A G+R ++LGDM ELG + H
Sbjct: 312 GRLRRQSLADGAVLIDDSYNANPGSVRAAIDTLA--AQPGRRWLVLGDMAELGPAGKALH 369
Query: 408 EKILSYCCDACIDLIGLVG 426
++ A ID + VG
Sbjct: 370 AEVGRQARVAGIDALFSVG 388
>gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
azollae' 0708]
gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
azollae' 0708]
Length = 454
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 201/369 (54%), Gaps = 36/369 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTRIL P + F A+ G+ FD HEF++ + KG + I + N +QV
Sbjct: 33 IQTDTRILQPG--EVFVALRGEKFDGHEFVAMAIV-KGAIAAIVDYAYENPVFPVLQV-- 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R+S +S ++GVTGSVGK+TTK +IA L + G V ++YGN+
Sbjct: 88 ---TDTLKAYQQIGRWWRDS-YSIPVIGVTGSVGKTTTKELIAAVLATKG-QVHKTYGNF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EM M G+G+I EL ++ARP I V+ NVG +H+E L S
Sbjct: 143 NNEIGVPKTLLELGAEHDFAVIEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLSSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E +A AK E+ E V +LN D PL+ +K + G ++++ +
Sbjct: 203 EAIAEAKCELLAEMPNDSVAILNYDSPLLMETA-----KKFWQG-------KVISYGFSG 250
Query: 289 GGLGVQVVLEKEREM--VKFVIPSPGLHLAINACAAAAVATLFGVS----LAQVGISLSN 342
G + +++ + E+ + +P PG H A N AA AVA + + A V +++ N
Sbjct: 251 GDIQGKLIDNETVEVAGIGLPLPLPGRHNATNFLAALAVAKVLEIDWQSLQAGVIVNMPN 310
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGS 401
RS+ + + I+++ YNA P + AA+ LL DI GKR + +LG M ELG
Sbjct: 311 -----GRSQRFTLPNDVIILDETYNAAPEAMLAALQLLADIP--GKRKIAVLGVMKELGE 363
Query: 402 TERESHEKI 410
++ H+++
Sbjct: 364 RSQQLHQQV 372
>gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF
[Bifidobacterium bifidum PRL2010]
gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bifidobacterium bifidum PRL2010]
Length = 513
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 142/436 (32%), Positives = 211/436 (48%), Gaps = 46/436 (10%)
Query: 28 TINEIAESVNGKIL--------KWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHE 76
T+ ++AE+V G+++ + G + + D+R + + F AI G+ D H+
Sbjct: 5 TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQV--REGSVFVAIAGERVDGHD 62
Query: 77 FISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLV 135
F++ V ++ ++V D Q+ V+ L L AR + + L+
Sbjct: 63 FVARAGESGAVVALVQHEV----DAPVAQIVVPDTVDALGLLAKANIAARRAVGTPFTLI 118
Query: 136 GVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195
G+TGSVGK+TTK ++A L +LG V G++NN +G+ L+ + + R V EMG S
Sbjct: 119 GITGSVGKTTTKDLMAALLSTLGPTV-APVGSFNNEIGLPLTALKVGRDTRFFVAEMGAS 177
Query: 196 GKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP 255
GEI L +A P+I VVL VG +HL GS+E +A+AK EI Q + VLNADD
Sbjct: 178 HVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDA 237
Query: 256 LVANLT--VPRGVRKVFFGWRRGCDVRLVAAQVANG---GLGVQVVLEKEREMVKFVIPS 310
VA + P+G VF+ G D A A+G L V + + F +
Sbjct: 238 HVAAMAPLAPQG--HVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLER 295
Query: 311 P------------GLHLAINACAAAAVATLFGVSLAQVGISL---SNFSPVQMRSELLVS 355
G H +NA AAA+VA L GV L + +L S SP +M V
Sbjct: 296 ADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVS-TVR 354
Query: 356 RSGIK--IVNDAYNANPISTRAAIDLLK--DIACNGKRVVILGDMLELGSTERESHEKIL 411
R G+ +++D++NANP S RA +D L + R+ +LG MLELG E HE I
Sbjct: 355 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSGEDPYRIAVLGAMLELGGDESALHEGIG 414
Query: 412 SYCCDACIDLIGLVGD 427
Y ID + VG+
Sbjct: 415 EYAAGLPIDAVIAVGN 430
>gi|395238725|ref|ZP_10416634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gigeriorum CRBIP 24.85]
gi|394477246|emb|CCI86611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gigeriorum CRBIP 24.85]
Length = 455
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 180/371 (48%), Gaps = 19/371 (5%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNS-LVNMA 122
F + G+ D H+F++ + GC+ + W KG N V ++ L M
Sbjct: 40 FVPLEGER-DGHDFVASAI-NNGCIATL-------WKKGHPNKPTNIAVLEVDDPLTAMQ 90
Query: 123 CYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG 180
AR+ + + +VG+TGS GK+TTK M+A L + NV ++ N+NN +GV ++++
Sbjct: 91 DLARHYLRKVNPSIVGITGSNGKTTTKDMVAAVL-AKRFNVHKTQANFNNEIGVPMTILE 149
Query: 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240
+ +I VLEMGM G++ L+ M P++ V+ +G++H+E G+ + +A AK EI
Sbjct: 150 MKPTTEILVLEMGMDRPGQLHHLSEMTHPDVTVITMIGEAHIEFFGTRDKIADAKMEITD 209
Query: 241 ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
+ + N D+PL+A K FG+R V + V +
Sbjct: 210 FLREDGEFIYNGDEPLLAERAKNLTQSKATFGFRNNDTVYATDFRSYKHHATFTVNNSDQ 269
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK 360
KF IP G H NA AA +V FG S ++ SL+NF+P R E G
Sbjct: 270 ----KFTIPMIGKHNVSNAMAALSVGRHFGESDEEIAASLANFTPTANRMEWEKGDVGED 325
Query: 361 IVNDAYNANPISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDAC 418
I++D YN+NP + RA + I +GKR+ +LGDMLELG H +
Sbjct: 326 IMSDVYNSNPTAVRAVLTSFGQIEMPEDGKRIAVLGDMLELGEASASLHAGLADSLDPQV 385
Query: 419 IDLIGLVGDRV 429
I+ + L G+ +
Sbjct: 386 INEVYLYGNEM 396
>gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia africae ESF-5]
gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia africae ESF-5]
Length = 449
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 185/370 (50%), Gaps = 14/370 (3%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQH-DFLVFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
F D+ V+NAD + + G + A + LG QV L+
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKKLSITDIHSFGRSAKTSAELILYENLGEQVYLK 264
Query: 299 KE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR 356
+ ++++ +IP H N + + G + L+N SP + R E +++
Sbjct: 265 YKINKKVLDVMIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRGE-IINI 323
Query: 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCD 416
+++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK++ Y D
Sbjct: 324 QNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEKLVQYILD 382
Query: 417 ACIDLIGLVG 426
A + LVG
Sbjct: 383 AACSKVYLVG 392
>gi|375091123|ref|ZP_09737422.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Helcococcus kunzii ATCC 51366]
gi|374564434|gb|EHR35730.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Helcococcus kunzii ATCC 51366]
Length = 459
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 191/380 (50%), Gaps = 17/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN--QVCNNWDKGFVQV 106
I DTR + + + + I G+ D H FI + KG + ++ ++ ++ V V
Sbjct: 30 ISIDTRTIF--EGEMYMPIIGEKLDGHLFID-NAFEKGAIATFSKRGEIEDSDERPIVWV 86
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ +T + N+A R S ++G+TGS GK+TTK +I+ LES +V +++G
Sbjct: 87 D-----DTNKAFTNLAQNYRIS-LDIKIIGITGSNGKTTTKDLISNVLES-KYSVKKTFG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV +L+ + +I V+EMG G G+I L +MA P+I ++ N+GDSHLE L
Sbjct: 140 NLNNEIGVPRTLLSFSKDTNIGVVEMGTDGFGQIEALTKMASPDIAIITNIGDSHLEQLK 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+ E++A K I K + + N DD ++ + + K + D V +
Sbjct: 200 TKENIAIEKLHIIDGLKEDGIFLFNNDDEILKSEFKKIDMDKKVISYGMNEDSDYVIKIL 259
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+ G + + + +F I G H NA A + LF +S + L+
Sbjct: 260 KSSQFGTKFSINGK----EFSIELLGTHQVYNATVAYIIGELFEISDTDIQEGLNKKDRT 315
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
+MRSEL+ S G I+ND+Y +NP S R+ ++ L+ + +++ IL DMLELG+ E E
Sbjct: 316 KMRSELM-SCHGFDILNDSYKSNPQSLRSGLETLELLTGYSRKIAILADMLELGNGEIEL 374
Query: 407 HEKILSYCCDACIDLIGLVG 426
H +I ID + L G
Sbjct: 375 HRQIGREIDPTKIDYLLLYG 394
>gi|425055861|ref|ZP_18459325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 505]
gi|403033018|gb|EJY44551.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Enterococcus faecium 505]
Length = 450
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 196/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 4 TIQEIAQAVGSECSALTKITNVEFDSRKIT--EGSLFVPLAGTR-DGHEFIQQ------- 53
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q + V + L ++ +A Y + +V +TGS GK
Sbjct: 54 -AITNGASASFWSLPVEQAPKDIPVIPVADPLKAMQQLANYYL-EKVGAEVVAITGSNGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 112 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 231 LVQTVTTFGIGNG-DVH--AEVTAEGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 283
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ FG+S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 284 TIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 343
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 344 PTKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 453
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 206/402 (51%), Gaps = 19/402 (4%)
Query: 29 INEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
+ E+AE + G + P I D+R L P F A+ G+ FD H F E G
Sbjct: 6 LKELAEVLQGHSIGDNVPITEIGIDSRTLKPGA--LFVALKGEQFDGHHFTG-EAQSHGA 62
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
VG++ + +++ +T +L +A + R + + LV +TGS GK++ K
Sbjct: 63 VGLLSECLLP------IKLPQIVVPDTRKALGQLAAWVRQ-QVNPRLVALTGSSGKTSVK 115
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M A L G +V + GN+NNR+GV L+L+ + D AVLE+G S G+I + A ++
Sbjct: 116 EMTAAILRQSG-HVLYTKGNFNNRIGVPLTLLRLTPEHDFAVLELGASQPGDIADTAALS 174
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA---DDPLVANLTVPR 264
RPE ++ N+ +HL GSL+ VA+AKGEI +++A D P +V R
Sbjct: 175 RPENVLITNLAQAHLSGFGSLKGVAKAKGEILTALAPTGTAIIHATSHDWPKWK--SVFR 232
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
G R FG +G +V A+ ++ L L K +P PGLH +NA AA+A
Sbjct: 233 GKRLWRFGLEKGKEVDFFASHLSKMPLATDFTLHSPLGSQKIYLPLPGLHNVLNALAASA 292
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
+A G L+ + +LS PV R+ ++ G +++D YNAN S AA +++ ++
Sbjct: 293 LAISVGADLSAISKALSELKPVPGRAFPMILGPGKLLLDDTYNANVGSMIAATEMMSNMP 352
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G RV+++GDM ELG + H+KI + A ID + +G
Sbjct: 353 --GYRVMVVGDMAELGEQSKNCHKKIGNIMRQAGIDKVFSLG 392
>gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
Length = 481
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 204/436 (46%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E + G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
Length = 481
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 205/436 (47%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLK---DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHLTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase
[Lactobacillus johnsonii NCC 533]
gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase
[Lactobacillus johnsonii NCC 533]
Length = 455
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 123/409 (30%), Positives = 198/409 (48%), Gaps = 35/409 (8%)
Query: 31 EIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFIS-------- 79
EIA+++N + G +I + D+R PN F + G D H+F+S
Sbjct: 7 EIAKALNSSV-NMGEDKVITSVVFDSRKATPN--SLFIPLDGAR-DGHDFVSNAMANGAE 62
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L+ KG G+ D ++VE + L +L N+A Y + + +VG+TG
Sbjct: 63 ATLWKKGHEGM-------PTDVPVIEVE-----DPLTALQNLAKYYL-GKVNPTVVGITG 109
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+A L S NV ++ N+NN +GV ++++ + + +I VLEMGM G+
Sbjct: 110 SNGKTTTKDMVAAVL-SKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQ 168
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
+ L+ + RP++ V+ +G++H+E G+ + +A AK EI K + N D+PL+
Sbjct: 169 LHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEE 228
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
K FG+R V + E +F IP G H NA
Sbjct: 229 RAAKIKQEKSTFGFREEDTVFATTFR----SYMHHATFEVNGSTQQFKIPMIGKHNVSNA 284
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA +V FG + Q+ +L+NF+P R + G I++D YN+NPI+ +A
Sbjct: 285 LAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDDVYNSNPIAVKAVTTS 344
Query: 380 LKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ G+R+ +LGDMLELG + H + + A I+ + L G
Sbjct: 345 FGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYG 393
>gi|383501490|ref|YP_005414849.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia australis str. Cutlack]
gi|378932501|gb|AFC71006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia australis str. Cutlack]
Length = 449
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 191/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H++ + + KG VI ++ DK + + + +L
Sbjct: 34 KGDLFIALKGNR-DGHDY-ALDAIDKGAAAVIVSKQVEIIDKDKIILVDD----CFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + L+ + VF GN+NN +G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKGLLQHASL-VFAGRGNFNNHLGLLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ ++ A+ E+GM+ KGEI EL ++ +P I V+ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDMEYAIFELGMNHKGEIRELVQILKPNIAVITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F+ D+ V+NAD ++ NL + R FG +LV + L
Sbjct: 205 FENFSKNDIAVINADTNCYSKILSILKNLYIDRVYN---FGVSHNTPAQLVLYE----NL 257
Query: 292 GVQVVLEK--EREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + ++ IP H A N + + G + L+N P + R
Sbjct: 258 GEQVHLKYTINNKSLEITIPFIPRHFAKNYTGVLLIIDILGKDIEIAANHLANIYPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E++ ++ +++ D YNA+P S +AA++ LK + K V+I GDMLELG + HE+
Sbjct: 318 GEIINIQNS-RVICDYYNASPKSMKAALEYLKQVMAENKTVII-GDMLELGENSKRLHEE 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y D I LVG
Sbjct: 376 LVPYILDVGCSKIYLVG 392
>gi|443323025|ref|ZP_21052036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gloeocapsa sp. PCC 73106]
gi|442787206|gb|ELR96928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gloeocapsa sp. PCC 73106]
Length = 450
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 131/389 (33%), Positives = 197/389 (50%), Gaps = 27/389 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R L P + F A+ G++FD H+FI L +G + +I +Q + K Q+
Sbjct: 33 ISTDSRFLQPG--EAFLALKGENFDGHDFIESAL-SRGAIALIVDQDLSV--KLLTQIPL 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTL + +A + R ++ S +VGVTGSVGK+TTK +I L + G V ++ GN+
Sbjct: 88 FRVNNTLTAYQEIAHWWR-TQLSIPVVGVTGSVGKTTTKELIGGILATQG-RVLKTEGNY 145
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ ID + D AV+EM M G+GEI L ++A P I V+ NVG +H+ LGS+
Sbjct: 146 NNEIGVPKTLLKIDSSHDYAVIEMAMRGRGEIARLTQIASPTIGVITNVGTAHIGRLGSI 205
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP--RGVRKVFFGWRRG--CDVRLVAA 284
+ +ARAK E+ + + V VLN D+ + + RG V FG G C L
Sbjct: 206 DAIARAKCELLAQMQPTGVAVLNHDNQKLMTIATEVWRG-ETVTFGLEGGDICGKLLDQE 264
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
+ G V +P G H A+N A AVA + GV L + L
Sbjct: 265 MMRVDG-------------VDLPLPLKGRHNALNYLGAIAVAKVLGVDLFPLTQGLEITI 311
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
P R++ S I I+++ YNA S AA++LL+ +R+ +LG M ELG
Sbjct: 312 P-GGRAKTYQLESDIWILDETYNAGLESMLAALELLQQTPGK-RRIAVLGTMKELGEHGL 369
Query: 405 ESHEKILSYCCDACIDLIGLVGDRVVVQC 433
H+++ ID + + D V +
Sbjct: 370 NFHQQVGEVVKKLGIDYLCVYADEEVTKA 398
>gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium breve DSM 20213 = JCM 1192]
gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium breve DSM 20213 = JCM 1192]
Length = 481
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 206/417 (49%), Gaps = 27/417 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQW--FFAITGQHFDAHEFISPELYGK 85
++ EIA++V+G+++ P I T+T + F AI G+ D H F+
Sbjct: 5 SVEEIAKAVDGRLVAGDGPAIEATETVTDSRQAGSGAVFVAIKGERVDGHGFVDKVADQG 64
Query: 86 GCVGVIGNQV-CNNWDKGFVQVEGNGNVNTLNSLVNMACY--ARNSRFSGV--LVGVTGS 140
++ ++V C + V+ +T+ +L +A + R + G L+G+TGS
Sbjct: 65 AAAAIVDHEVACTTMPQIVVE-------DTVAALGLLAKHNIDRRRQLPGAFDLIGLTGS 117
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +++ L +LG V G++NN +G+ L+ + ++ V EMG + GEI
Sbjct: 118 VGKTTTKDLLSALLSTLGPTV-APIGSFNNEIGLPLTALRVNADTRFFVAEMGANHIGEI 176
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V +
Sbjct: 177 ARLTRIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDDYVVPM 236
Query: 261 TVPRGVRKVFF--GWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
++F G R +V + + E V + PG H +N
Sbjct: 237 AQFASGDVLWFGQGHTRDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGRHNVMN 296
Query: 319 ACAAAAVATLFGVSLAQVGISLS---NFSPVQMRSELLVSRSG--IKIVNDAYNANPIST 373
A AAA VA +G+ L + +L+ SP +M VSR G ++++D++NANP S
Sbjct: 297 ALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALS-TVSRQGASFELIDDSFNANPDSM 355
Query: 374 RAAIDLLKDIACN-GK---RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+A +D L+ N G+ RV +LG MLELG+ ERE H + Y +D I VG
Sbjct: 356 KAGLDGLRAWNANDGRQPFRVALLGAMLELGADERELHASVGEYAAGLGLDAIITVG 412
>gi|358638717|dbj|BAL26014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
sp. KH32C]
Length = 466
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 201/417 (48%), Gaps = 18/417 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+ T+ E+A+ ++ + + TD+R + Q F A+ G+ FD H+F++ L G+
Sbjct: 1 MLTLQEVAQGLDLRATAEARFDCVGTDSRRI--RAGQLFVALRGERFDGHDFVA--LAGE 56
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
+ G V++ +T +L +A + R RF L+GVTGS GK+T
Sbjct: 57 QGAVAALVDAAWAAEHGDVELPLLIADDTRLALGALAAFWRR-RFEIPLIGVTGSNGKTT 115
Query: 146 TKSMIALALESLGV-------NVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
K M A + + V + GN NN +G+ L+L+ + A++EMGM+ G
Sbjct: 116 VKEMCAAIMRAQARLDGRGPGAVLATSGNLNNDIGLPLTLLELRDGHCAAIIEMGMNHPG 175
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L +ARP + +V N +HL +GSL ++A KG I+ V ++NADDP A
Sbjct: 176 EIAYLTDIARPTVAIVTNAQRAHLMGMGSLVEIAHEKGAIYAGLAEDGVAIVNADDPHAA 235
Query: 259 NLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
+ R+V FG DV + Q G G + L R VK + PG+H
Sbjct: 236 YWSDLNAGRRVMSFGMEHPADVTVRCTQ---HGFGSSLELVTPRNTVKIELQVPGVHNVR 292
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377
NA AAA G +L V L+ FS R + G I++D YNANP S RAAI
Sbjct: 293 NAAGAAAACLAAGATLEAVVEGLAGFSGAPGRLQRRPGLGGAVILDDTYNANPDSMRAAI 352
Query: 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCK 434
D+L A G V++LGDM E+G T + H++I Y ID + +G+ V
Sbjct: 353 DVLASTA--GHTVLVLGDMGEIGQTSAQLHDEIGGYAKSKGIDTLYALGEMSAVAAH 407
>gi|374290179|ref|YP_005037232.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Blattabacterium sp. (Cryptocercus punctulatus) str.
Cpu]
gi|358376971|gb|AEU09159.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Blattabacterium sp. (Cryptocercus punctulatus) str.
Cpu]
Length = 434
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 190/369 (51%), Gaps = 15/369 (4%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
KN FF++ G+ FD ++F + + ++ N+ + K V+ N+L L
Sbjct: 25 KNSIFFSLKGKKFDGNQFAYEAILNGAMIAIVDNKKYSLLHKNIFYVK-----NSLYFLH 79
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
+A Y R + ++ +TGS GK+TTK +I L NV + GN+NN +G+ L+++
Sbjct: 80 KLAIYHRFKLINIPIIAITGSNGKTTTKELITSILSKKYENVHHTKGNFNNHIGIPLTIL 139
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+ + I+V+E+G + + EI ++ + P+ + N G +HLE +++ + R K E++
Sbjct: 140 SMPKNTQISVIEIGANHEKEIKKMCSIINPDYGYITNFGKAHLEGFKNIKGIIRGKLELY 199
Query: 240 QESKLGDVCVLNADDP--LVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVL 297
K +N DDP L+ ++ + R + F + + ++ + N +G++ +L
Sbjct: 200 NFLKKIKKVFINGDDPIQLINSIEMNRYI----FSEKVNSNPNIIIQYLWN-KIGLRSIL 254
Query: 298 EKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357
+ +K V P G + N A+ + F +SL ++ ++ F P RS++L ++
Sbjct: 255 CIKN--IKIVSPLVGDYNLYNIAASITIGIYFKISLKKIKKTIEEFIPHNNRSQIL-KKN 311
Query: 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDA 417
IKI+ D YNANP S + L + G ++ ILGDMLELG+ H+KI+ Y +
Sbjct: 312 NIKIIIDCYNANPSSMIKSSLLFFNNKIIGNKIAILGDMLELGNYSEYEHKKIIFYLEKS 371
Query: 418 CIDLIGLVG 426
I+ I L+G
Sbjct: 372 NINSIFLIG 380
>gi|384196746|ref|YP_005582490.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium breve ACS-071-V-Sch8b]
gi|417942402|ref|ZP_12585673.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium breve CECT 7263]
gi|333110624|gb|AEF27640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium breve ACS-071-V-Sch8b]
gi|376167051|gb|EHS85913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium breve CECT 7263]
Length = 481
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 209/417 (50%), Gaps = 27/417 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQW--FFAITGQHFDAHEFISPELYGK 85
++ EIA++V+G+++ P I T+T + F AI G+ D H+F+
Sbjct: 5 SVEEIAKAVDGRLVAGDGPAIEATETVTDSRQAGSGAVFVAIKGERVDGHDFVDKVAAQG 64
Query: 86 GCVGVIGNQV-CNNWDKGFVQVEGNGNVNTLNSLVNMACY--ARNSRFSGV--LVGVTGS 140
++ ++V C + V+ +T+ +L +A + R + G L+G+TGS
Sbjct: 65 AAAAIVDHEVACTTMPQIVVE-------DTVAALGLLAKHNIDRRRQLPGAFDLIGLTGS 117
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +++ L +LG V G++NN +G+ L+ + ++ V EMG + GEI
Sbjct: 118 VGKTTTKDLLSALLSTLGPTV-APIGSFNNEIGLPLTALRVNADTRFFVAEMGANHIGEI 176
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V +
Sbjct: 177 ARLTRIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDDYVVPM 236
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQ--VVLEKEREMVKFVIPSPGLHLAIN 318
++FG D + A +A + + E V + PG H +N
Sbjct: 237 AQLASGDVLWFGQGHTHDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGRHNVMN 296
Query: 319 ACAAAAVATLFGVSLAQVGISLS---NFSPVQMRSELLVSRSG--IKIVNDAYNANPIST 373
A AAA VA +G+ L + +L+ SP +M VSR G ++++D++NANP S
Sbjct: 297 ALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALS-TVSRQGASFELIDDSFNANPDSM 355
Query: 374 RAAIDLLKDIACN-GK---RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+A +D L+ N G+ RV +LG MLELG+ ERE H + Y +D I VG
Sbjct: 356 KAGLDGLRAWNANDGRQPFRVALLGAMLELGADERELHASVGEYAAGLGLDAIITVG 412
>gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus johnsonii FI9785]
gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus johnsonii FI9785]
Length = 455
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 200/409 (48%), Gaps = 35/409 (8%)
Query: 31 EIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFIS-------- 79
EIA+++N + G +I + D+R PN F + G D H+F+S
Sbjct: 7 EIAKALNSSV-NMGEDKVITSVVFDSRKATPN--SLFIPLDGAR-DGHDFVSNAMANGAE 62
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L+ KG G+ D ++VE + L +L N+A Y + + +VG+TG
Sbjct: 63 ATLWKKGHEGM-------PTDVPVIEVE-----DPLTALQNLAKYYL-GKVNPTVVGITG 109
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+A L S NV ++ N+NN +GV ++++ + + +I VLEMGM G+
Sbjct: 110 SNGKTTTKDMVAAVL-SKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQ 168
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
+ L+ + RP++ V+ +G++H+E G+ + +A AK EI K + N D+PL+
Sbjct: 169 LHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEE 228
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
K FG+R + V A + + E +F IP G H NA
Sbjct: 229 RAAKIKQEKSTFGFR---EEDTVFATIFRSYMH-HATFEVNGSTQQFKIPMIGKHNVSNA 284
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA +V FG + Q+ +L+NF+P R + G I++D YN+NP + RA
Sbjct: 285 LAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDDVYNSNPTAVRAVTTS 344
Query: 380 LKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ G+R+ +LGDMLELG + H + + A I+ + L G
Sbjct: 345 FGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYG 393
>gi|406983109|gb|EKE04357.1| hypothetical protein ACD_20C00085G0014 [uncultured bacterium]
Length = 453
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 196/389 (50%), Gaps = 34/389 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR ++P + F + G FD H+FI + GC G ++ K QV+
Sbjct: 28 ISTDTRTISPE--EIFLPLVGAKFDGHDFIKTAVEN-GCRGYFVDK------KHKKQVDS 78
Query: 109 NGNV--------NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN 160
+ +TL + + +A A+ + + + VTGS GK+TTK MI L S
Sbjct: 79 YAGLVKFVIGVDDTLEAYLKLAN-AKRRKIKPLTIAVTGSSGKTTTKEMIFSVL-SQQYK 136
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
+S N NN VG+ +L+ + + V+EMGM G GEI L++ A+P++ V+ N+G +
Sbjct: 137 THKSQLNHNNEVGLCQTLLRMPDDTEFLVVEMGMRGSGEIEVLSKYAQPDVAVITNIGTA 196
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR 280
H+ LGS+E++A+AK EI + V V + +D LV +K F +
Sbjct: 197 HIGRLGSIENIAQAKCEIVKHLNKEGVLV-SYNDELV---------KKTLFWKGKTAYYD 246
Query: 281 LVAAQV-ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGIS 339
L AQ+ G Q + + + + G + INA AA L GVS +
Sbjct: 247 LNDAQIIKTDDNGSQFIYKNNT----YQLNVSGEYNIINALAAIEAGKLAGVSSDNIAKG 302
Query: 340 LSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLEL 399
L+ + P++ R +++ + +KI+ND+YNANP S +A+I+ + N K V++LGDM EL
Sbjct: 303 LAQYKPIENRWQVIELENNVKIINDSYNANPDSMKASINATINSYKNSKIVLVLGDMGEL 362
Query: 400 GSTERESHEKILSYCCDACIDLIGLVGDR 428
G E H +I ++ D I + +GD+
Sbjct: 363 GEHEDVLHREIGTFLNDKKISQLITIGDK 391
>gi|418939987|ref|ZP_13493367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
sp. PDO1-076]
gi|375053283|gb|EHS49682.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
sp. PDO1-076]
Length = 477
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 202/415 (48%), Gaps = 25/415 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT ++ ++ G+ P GI I D+R + P + FFAI G D H++ S +
Sbjct: 4 LWTSRDMVAAMAGRPFGNLPEGITGISIDSRTITPG--EAFFAIKGDRVDGHDYASIAIA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + VE + L L + AR+ R ++ VTGS
Sbjct: 62 NGASLLVVNEAKLPALGRLTVPMIVVE-----DVLIGLEKLGQAARD-RTPATVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ +ALE G NV + ++NN GV L+L + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRVALEPSG-NVHAAVASFNNHWGVPLTLARMPMDTRYGVFEIGMNHPGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
LA+M RP++ ++ + +HL + S+E++A AK EIF G +LN D+ L
Sbjct: 175 GPLAQMVRPDVAIITTIAPAHLGNFSSVEEIAAAKAEIFDGLARGGDVILNRDNAYFEQL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
GV + FG + RL A V V E + I +PG HLA
Sbjct: 235 EQAAYAAGVENIHTFGQHAKAEFRLAEFDGAAERSTVWVSFGGETREIS--IGAPGRHLA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA A A +L G + +L+N +PV+ R +L + R + +++++YNANP S
Sbjct: 293 ENAMAVLAAVSLVGADVDAAIDALANLAPVKGRGQRHKLAIGRDVLTLIDESYNANPASM 352
Query: 374 RAAIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
RAAI +L +G+R+ +LGDMLE+G H + S A I+ + L G
Sbjct: 353 RAAIAVLAAAQPGYDGRRIAVLGDMLEMGDFSASVHADLASPLLAAGIEHVWLAG 407
>gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
sibirica 246]
gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
sibirica 246]
Length = 449
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 111/370 (30%), Positives = 185/370 (50%), Gaps = 14/370 (3%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMFINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
F D+ V+NAD + + G + A + LG QV L+
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKKLSITDIHSFGRSAKTSAELILYENLGEQVYLK 264
Query: 299 KE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR 356
+ ++++ IP H N + + G + L+N SP + R E +++
Sbjct: 265 YKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRGE-IINI 323
Query: 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCD 416
+++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK++ Y D
Sbjct: 324 QNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEKLVQYILD 382
Query: 417 ACIDLIGLVG 426
A + LVG
Sbjct: 383 AACSKVYLVG 392
>gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Lactobacillus helveticus DPC 4571]
gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|417013568|ref|ZP_11946653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Lactobacillus helveticus MTCC 5463]
gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Lactobacillus helveticus DPC 4571]
gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Lactobacillus helveticus MTCC 5463]
Length = 455
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 178/370 (48%), Gaps = 23/370 (6%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGFVQVEGNGNV----NTLNSL 118
F + G+ D H+F++ G I N W KG N V N L ++
Sbjct: 40 FVPLEGER-DGHDFVA---------GAISNGASATLWKKGHPNKPENITVIEVDNPLTAM 89
Query: 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
++A Y + + +VG+TGS GK+TTK MIA L S NV ++ N+NN +GV +++
Sbjct: 90 QDLARYYLR-KVNPTVVGITGSNGKTTTKDMIAAVL-SKRFNVHKTQANFNNEIGVPMTI 147
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + +I VLEMGM G++ L+ + P++ V+ +G++H+E GS + +A AK EI
Sbjct: 148 LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEI 207
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+ + N D+PL+ K FG+R D V A +
Sbjct: 208 TDFLREDGEFIYNGDEPLLQERAKKLDQAKATFGFR---DEDTVHATGFKSYMHHATFTI 264
Query: 299 KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG 358
+ E KF IP G H NA AA +V FG S ++ SLSNF P R E +G
Sbjct: 265 NDSEQ-KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANRMEWEKGDAG 323
Query: 359 IKIVNDAYNANPISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCD 416
I++D YN+NP + RA + + G+R+ +LGDMLELG E H +
Sbjct: 324 EAIMSDVYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKKSPELHAGLSDTLDP 383
Query: 417 ACIDLIGLVG 426
I+ + L G
Sbjct: 384 QIINEVYLYG 393
>gi|395767300|ref|ZP_10447835.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella doshiae NCTC 12862]
gi|395414613|gb|EJF81055.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella doshiae NCTC 12862]
Length = 473
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 211/419 (50%), Gaps = 26/419 (6%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ +W + ++NG + P I D+R LA + FF I G H D H+F++ +
Sbjct: 2 TALWDKQALITAINGCAIGCIPEFFSGISIDSRTLA--EGDIFFCIKGHHLDGHDFVA-Q 58
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV--NTLNSLVNMACYARNSRFSGVLVGVTG 139
Y +G +I V N ++ V + L +L +A AR R ++ +TG
Sbjct: 59 AYARGAGVLI---VAENRLAEMEKISAPMIVVPDVLQALEKLAQAARK-RSKAKIIAITG 114
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK + AL S+G V + + NN GV L+L + D + E+GM+ K E
Sbjct: 115 SVGKTTTKEALKHALASVG-KVHANLASLNNCWGVPLTLARMPIESDYGIFELGMNHKDE 173
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L ++ RP + ++ ++ H+ +L+++A AK EIF+ V +LNAD +
Sbjct: 174 IRPLVKLVRPHVALITHIAAGHMGFFKNLQEIADAKAEIFEGLDDEGVVLLNADSDFFSY 233
Query: 260 LTVPR----GVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L V R GV+++F FG + D + ++ V + + +++K I +PG H
Sbjct: 234 L-VQRAKQCGVKQIFSFGEAKNSDYQAREIHLSMDCSSTIVRIRGKDKVIK--IGAPGRH 290
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL----LVSRSGIKIVNDAYNANP 370
+ N+ A A + GV LA V SLS+FS + R L S +++++YNANP
Sbjct: 291 IVQNSLAVLAACDVIGVDLAYVSHSLSHFSLQKGRGARYCLSLPSGGKFHLIDESYNANP 350
Query: 371 ISTRAAIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S AA+DLL + G+R+ +LGDMLELG+ + H ++ C + L+ L G+
Sbjct: 351 ASMCAALDLLATGPVGIGGRRIALLGDMLELGAYSEKLHRDLVKPICLSGAHLVFLFGE 409
>gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia massiliae MTU5]
gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia massiliae MTU5]
Length = 449
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 190/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKYKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
+A Y R NS+ + +TGSVGK++TK + ++L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KIALYKRENSK--AKFIAITGSVGKTSTKEALKVSLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSSKTSAELILYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-MINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|410421659|ref|YP_006902108.1| murein biosynthesis bifunctional protein [Bordetella bronchiseptica
MO149]
gi|408448954|emb|CCJ60640.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica MO149]
Length = 945
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 186/385 (48%), Gaps = 18/385 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ- 105
G + TDTR + + + F A++G++FD H+++ C V+ + V D Q
Sbjct: 508 GAVSTDTRRI--GRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA---DVALPQL 562
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN--VFQ 163
V G+ TL +L M R+S F+ +V VTGS GK+TTK MI+ L +
Sbjct: 563 VLGD----TLAALGRMGTAWRSS-FTLPVVAVTGSNGKTTTKEMISAILAHWQGDDGRLA 617
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +GV L+L+ + AV E+GM+ GEI LA MA P + +V N H E
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQE 677
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLV 282
+ ++E VA G + V V D+P A G R+V FG + G DV
Sbjct: 678 FMHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQPGLDV--Y 735
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A +V G Q + + +P PGLH NA AA A G L ++L+
Sbjct: 736 AERVVTQAHGTQCGVVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIVALAG 795
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F V R + G +++D YNANP S RAAID+L + R ++LGDM E+G
Sbjct: 796 FQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPA--PRALVLGDMGEVGDN 853
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
H ++ Y + ID + +G+
Sbjct: 854 GPAMHREVGDYAREHGIDALITLGE 878
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 146/401 (36%), Gaps = 43/401 (10%)
Query: 24 SPIWTINEIAESVNGKILKW-----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
SP +N + + L W P + D+R + P F A G D +F+
Sbjct: 2 SPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGD--VFVACPGLASDGRQFM 59
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L +G ++ Q + TL + Y R S+ V V +T
Sbjct: 60 DQAL-ARGASAILYETEGAPVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSV-VAIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
G+ GK++ +A L +G S G + SL G D+ + ++
Sbjct: 118 GTNGKTSCTQWLAQVLTRMG-KPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMR 176
Query: 199 EI-------------LELARMARPEIRVV--LNVGDSHLESLGSLEDVARAKGEIFQESK 243
+E R+ I V N+ HL+ G+++ +AK +FQ
Sbjct: 177 AAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPD 236
Query: 244 LGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKE 300
L V+NADDP L ++P ++ + DV Q A+G + + + E
Sbjct: 237 L-QAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGE 295
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR---------SE 351
++V ++ G H N A + G L Q+ L+ SPV R
Sbjct: 296 AQIVTRLL---GQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQH 352
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNGKRVV 391
L G +V D Y P + A+ L+ +A G R+V
Sbjct: 353 LTAGAQGALVVVD-YAHTPDALARALTALRPVAHARGGRLV 392
>gi|403514286|ref|YP_006655106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Lactobacillus helveticus R0052]
gi|403079724|gb|AFR21302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Lactobacillus helveticus R0052]
Length = 455
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 178/370 (48%), Gaps = 23/370 (6%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGFVQVEGNGNV----NTLNSL 118
F + G+ D H+F++ G I N W KG N V N L ++
Sbjct: 40 FVPLEGER-DGHDFVA---------GAISNGASATLWKKGHPNKPENITVIEVDNPLTAM 89
Query: 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
++A Y + + +VG+TGS GK+TTK MIA L S NV ++ N+NN +GV +++
Sbjct: 90 QDLARYYL-RKVNPTVVGITGSNGKTTTKDMIAAVL-SKRFNVHKTQANFNNEIGVPMTI 147
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + +I VLEMGM G++ L+ + P++ V+ +G++H+E GS + +A AK EI
Sbjct: 148 LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEI 207
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+ + N D+PL+ K FG+R D V A +
Sbjct: 208 TDFLREDGEFIYNGDEPLLQERAKKLDQAKATFGFR---DEDTVHATGFKSYMHHATFTI 264
Query: 299 KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG 358
+ E KF IP G H NA AA +V FG S ++ SLSNF P R E +G
Sbjct: 265 NDSEQ-KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANRMEWEKGDAG 323
Query: 359 IKIVNDAYNANPISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCD 416
I++D YN+NP + RA + + G+R+ +LGDMLELG E H +
Sbjct: 324 EAIMSDVYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGEKSPELHAGLSDTLDP 383
Query: 417 ACIDLIGLVG 426
I+ + L G
Sbjct: 384 QIINEVYLYG 393
>gi|169831597|ref|YP_001717579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
Desulforudis audaxviator MP104C]
gi|169638441|gb|ACA59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
Desulforudis audaxviator MP104C]
Length = 470
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 127/407 (31%), Positives = 201/407 (49%), Gaps = 17/407 (4%)
Query: 28 TINEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
TI EI +I++ P + TDTR+LA + F A+ G FD H+F +
Sbjct: 5 TIAEIRAVTGAEIIQGEPSARVKRVTTDTRVLA--GGELFVALRGSRFDGHDFAGQAVDR 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
C ++ +V ++V +TL +L +A N R G+ V
Sbjct: 63 GACGLLVSREVSVPSGVAVLKV-----ADTLTALQALALD--NRRRCGLPVIAVTGSTGK 115
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TT + A+ + V + N NN +G+ L+L+ +D ++AV+E+GM GEI LA
Sbjct: 116 TTTKDLLTAVLAARFRVLATRENLNNEIGLPLTLLDVDPVHEVAVVELGMRAPGEIDLLA 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP-LVANLTVP 263
R+ P V+ N+G++HLE LGS+ ++ARAKGE+ VL+A+ P +
Sbjct: 176 RICEPTGGVITNIGETHLELLGSVANIARAKGELLDHIPPSGFAVLHAESPGMDEQARRC 235
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
RG R V FG D RL+ + G +V E ++ +P G H A+NA AA
Sbjct: 236 RG-RVVRFGESESADFRLLDYRALPDGSVFRVRSAGGDE--EYYLPLFGRHTALNALAAI 292
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
AV G++++++ L +R + +V G+ I+ND YNA+P S +AA+++L +I
Sbjct: 293 AVGLELGLAVSEIRAGLEQARASSLR-QAIVKAGGLTIINDTYNASPASVKAALEVLAEI 351
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
A V ILG MLELG E+H ++ C A + + +G+ V
Sbjct: 352 AAGRSTVAILGGMLELGPRSSEAHREVGMACAHAGVGQLVTMGELAV 398
>gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Nitrosomonas eutropha C91]
gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrosomonas eutropha C91]
Length = 457
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 202/390 (51%), Gaps = 29/390 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ----VCNNWDKGFV 104
+ TD+R L P F A++G+ FD FIS + KG V + + V D G++
Sbjct: 27 VSTDSRTLRPGD--LFIALSGEQFDGQHFISTAIE-KGAVAAMVSTDTVIVPTKSDFGWI 83
Query: 105 QVEGNGNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALAL--ESLGVN 160
+V ++ + A N R F+ LV VTGS GK+T K MIA E N
Sbjct: 84 KVN--------DTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVKEMIAAIFRHEFGSGN 135
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
V + GN NN +GV L+ ++ AV+EMGM+ GEI L+++A P I V+ N G +
Sbjct: 136 VLATTGNLNNDIGVPQMLLQLNTGHTCAVIEMGMNHAGEIAYLSQLAAPTIAVITNAGTA 195
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDV 279
H+E LG+ E +ARAKGEIF + ++NADD G R++ FG +
Sbjct: 196 HIEHLGTTEAIARAKGEIFTGLGAQGIAIINADDAYAQLWRQLAGSRQILDFGITNPAAI 255
Query: 280 RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGIS 339
R AQ + +L+ + V+ + PG H NA AAAA AT G+S +
Sbjct: 256 R---AQQMSSSSEAAWLLQLPDDKVEITLQVPGRHNIYNALAAAAAATAAGISTTSIAEG 312
Query: 340 LSNF--SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
L NF +P +++ ++ + +S +++D YNANP S +AA+++L ++ GK+++I+GDM
Sbjct: 313 LHNFMGTPGRLQKKVGLYQS--ILIDDTYNANPDSMQAALNVLAEMP--GKKILIMGDMG 368
Query: 398 ELGSTERESHEKILSYCCDACIDLIGLVGD 427
ELG+ H I A ID + +G+
Sbjct: 369 ELGTDAAGFHYTIGQQAAKAGIDALLALGE 398
>gi|33598266|ref|NP_885909.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Bordetella parapertussis 12822]
gi|427816187|ref|ZP_18983251.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica 1289]
gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella parapertussis]
gi|410567187|emb|CCN24758.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica 1289]
Length = 945
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 127/385 (32%), Positives = 185/385 (48%), Gaps = 18/385 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ- 105
G + TDTR + + + F A++G++FD H+++ C V+ + V D Q
Sbjct: 508 GAVSTDTRRI--GRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA---DVALPQL 562
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN--VFQ 163
V G+ TL +L M R+S F+ +V VTGS GK+TTK MI+ L +
Sbjct: 563 VLGD----TLAALGRMGTAWRSS-FTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLA 617
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +GV L+L+ + AV E+GM+ GEI LA MA P + +V N H E
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQE 677
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLV 282
+ ++E VA G + V V D+P A G R+V FG + G DV
Sbjct: 678 FMHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQPGLDV--Y 735
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A +V G Q L + +P PGLH NA AA A G L +L+
Sbjct: 736 AERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAG 795
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F V R + G +++D YNANP S RAAID+L + R ++LGDM E+G
Sbjct: 796 FQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPA--PRALVLGDMGEVGDN 853
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
H ++ Y + ID + +G+
Sbjct: 854 GPAMHREVGDYAREHGIDALITLGE 878
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 146/401 (36%), Gaps = 43/401 (10%)
Query: 24 SPIWTINEIAESVNGKILKW-----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
SP +N + + L W P + D+R + P F A G D +F+
Sbjct: 2 SPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGD--VFVACPGLASDGRQFM 59
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L +G ++ Q + TL + Y R S+ V V +T
Sbjct: 60 DQAL-ARGASAILYETEGAPVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSV-VAIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
G+ GK++ +A L +G S G + SL G D+ + ++
Sbjct: 118 GTNGKTSCTQWLAQVLTRMG-KPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMR 176
Query: 199 EI-------------LELARMARPEIRVV--LNVGDSHLESLGSLEDVARAKGEIFQESK 243
+E R+ I V N+ HL+ G+++ +AK +FQ
Sbjct: 177 AAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPD 236
Query: 244 LGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKE 300
L V+NADDP L ++P ++ + DV Q A+G + + + E
Sbjct: 237 L-QAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGE 295
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR---------SE 351
++V ++ G H N A + G L Q+ L+ SPV R
Sbjct: 296 AQIVTRLL---GQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQH 352
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNGKRVV 391
L G +V D Y P + A+ L+ +A G R+V
Sbjct: 353 LTAGAQGALVVVD-YAHTPDALARALTALRPVAQARGGRLV 392
>gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase [Rickettsia
akari str. Hartford]
gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
akari str. Hartford]
Length = 449
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 192/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H++ + + KG VI ++ DK + + + +L
Sbjct: 34 KGDLFIALKGNR-DGHDY-ALDAIDKGAAAVIVSKQVEITDKDKILLVDD----CFEALK 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF GN+NN +G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKILLQHDSL-VFAGRGNFNNYLGLLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ ++ A+LE+GM+ KGEI EL ++ +P I V+ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDMEYAILELGMNHKGEIRELVQILKPNIAVITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F+ D+ V+NAD ++ NL + R FG +LV + L
Sbjct: 205 FENFSKNDIAVINADTNCYSKILSILKNLYIDRVYN---FGILHNTHAQLVLYE----HL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + + ++ IP H A N + + G + L+N P + R
Sbjct: 258 GAQVRLKYKINNKSLEITIPFIPRHFAKNYTVVLLIIDILGKDIEIAANHLANIYPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
+ +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HE+
Sbjct: 318 GD-IINIQNARVICDYYNASPKSMQAALEYLKQVMAENKTAII-GDMLELGKNSKLLHEE 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y D I LVG
Sbjct: 376 LVPYILDVGCSKIYLVG 392
>gi|392970004|ref|ZP_10335413.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus equorum subsp. equorum Mu2]
gi|403046048|ref|ZP_10901523.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus sp. OJ82]
gi|392511932|emb|CCI58618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Staphylococcus equorum subsp. equorum Mu2]
gi|402764210|gb|EJX18297.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus sp. OJ82]
Length = 451
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 124/383 (32%), Positives = 197/383 (51%), Gaps = 23/383 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY-GKGCVGVIGNQVCN-NWDKGFVQV 106
+ D+R++ N F G++ D H++++ L G G V + + N D + V
Sbjct: 29 VSIDSRVI--NNQNLFIPFKGENVDGHKYVAQALKDGAGAVFYQKDVTLDKNIDGPVIWV 86
Query: 107 EGNGNVNTLNSLVNMA-CYARNSRFSG-VLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
E NTL +L +A Y F G ++ VTGS GK+TTK MI L+ V ++
Sbjct: 87 E-----NTLKALQQLAKAYLE---FVGPQVIAVTGSNGKTTTKDMIESVLKP-QFKVKKT 137
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +G+ L+++ +D+ +I++LEMGMSG EI L+ +A P I ++ N+G+SH++
Sbjct: 138 QGNYNNEIGLPLTILELDQDTEISILEMGMSGFNEIELLSNLAEPNIAIITNIGESHMQE 197
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLV-ANLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK EI + V + + D+PL+ +++T V G + +
Sbjct: 198 LGSREGIAQAKAEIITGLRSNGVFIYDGDEPLLESHVTKILDADIVSIGKDKDNTLVCQI 257
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+ N G+ V + ER F +P G H NA A AV G+S + +L
Sbjct: 258 EDIENAGI-VFNINGGER----FDLPILGEHNMKNATIAIAVGKRLGLSHDIIFNNLRKV 312
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
MR E + ++NDAYNA+P S +AAID L G+++++LGD+LELG
Sbjct: 313 ELTGMRMEQHYTSDNKLVINDAYNASPTSMKAAIDTLS--IMKGRKIIVLGDVLELGPDS 370
Query: 404 RESHEKILSYCCDACIDLIGLVG 426
+ HE + Y ID + G
Sbjct: 371 QMMHENVGRYLEGKNIDALFTFG 393
>gi|256819594|ref|YP_003140873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase
[Capnocytophaga ochracea DSM 7271]
gi|256581177|gb|ACU92312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Capnocytophaga
ochracea DSM 7271]
Length = 444
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 188/380 (49%), Gaps = 32/380 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + + DK + V+
Sbjct: 15 VSTDTRNITPNS--IYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVF-FGWRRGCDV------- 279
E V + KGE++ K ++ NAD+P+ L V+ FG G +V
Sbjct: 185 EGVIKTKGELYDYLKTHHKTIIANADNPITEALL--ENYNNVYSFGVGEGVNVSAQCLST 242
Query: 280 RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGL---HLA-----INACAAAAVATLFGV 331
+ V Q A+ L Q E ++ +P + HL N A+ A F +
Sbjct: 243 QPVKIQFADSSL--QTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASVAFGRYFKL 300
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
S + + ++ P RS+LL S ++ DAYNANP S AAID L + +V+
Sbjct: 301 STKAIQKGIESYIPQNNRSQLLQWGSNTVLL-DAYNANPSSMTAAIDNLLSMNSFPNKVL 359
Query: 392 ILGDMLELGSTERESHEKIL 411
ILGDM ELG + H+ I+
Sbjct: 360 ILGDMFELGDYATQEHQSIV 379
>gi|434391816|ref|YP_007126763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gloeocapsa sp. PCC 7428]
gi|428263657|gb|AFZ29603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gloeocapsa sp. PCC 7428]
Length = 450
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 213/409 (52%), Gaps = 43/409 (10%)
Query: 25 PIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
P+ + EI G I TD+R + P + F A+ G+ FD H+F+S L
Sbjct: 18 PVLSKTEITTQFTG----------INTDSRTIKPG--EVFVALRGEKFDGHKFVSAALE- 64
Query: 85 KGCVGVIGNQVCNNWDKG--FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KG + I + + ++ F+QVE +TL + +A + R +FS ++ +TGSVG
Sbjct: 65 KGAIAAIVDSGFQSPNESIPFLQVE-----DTLKAYQQIAHWWRQ-QFSIPVIAITGSVG 118
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK +IA L + G +V ++ N+NN +GV +L+G+ D AV+EM M KGEI
Sbjct: 119 KTTTKELIAAVLATQG-SVLKTQANYNNEIGVPKTLLGLGSEHDYAVVEMAMRAKGEIAL 177
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP--LVANL 260
L ++A P I V+ NVG +H+E LGS + +A AK E+ + V +LN D+ +
Sbjct: 178 LTQIACPTIGVITNVGTAHIERLGSEQAIAEAKCELLAQMPNSAVAILNHDNSRLMKTAA 237
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
TV +G + V +G G DVR ++A+ + V + + +P PG H A N
Sbjct: 238 TVWQG-QTVTYGL-EGGDVR---GEIASDRIVV--------DGTEVTLPLPGRHNATNFL 284
Query: 321 AAAAVATLFGV--SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
AA AVA + + S G+ + S R EL + + I++++YNA P + +AA+
Sbjct: 285 AALAVAKVLQIDWSCLNTGLVVDMPSGRSQRYEL---PNDVVILDESYNAAPEAMKAALH 341
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
LL + +R+ +LG M ELG + H+++ IDL+ ++ D
Sbjct: 342 LLAETPAK-RRIAVLGAMKELGERSLQLHQEVGKLVDQLKIDLLIVLVD 389
>gi|227878360|ref|ZP_03996315.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus crispatus JV-V01]
gi|256844403|ref|ZP_05549889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
125-2-CHN]
gi|256849209|ref|ZP_05554642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
MV-1A-US]
gi|295692131|ref|YP_003600741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Lactobacillus crispatus ST1]
gi|227862039|gb|EEJ69603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus crispatus JV-V01]
gi|256613481|gb|EEU18684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
125-2-CHN]
gi|256713985|gb|EEU28973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
MV-1A-US]
gi|295030237|emb|CBL49716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus crispatus ST1]
Length = 455
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 179/368 (48%), Gaps = 19/368 (5%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV-QVEGNGNVNTLNSLVNMA 122
F + G+ D HEFI+ + G + W KG + E + + L M
Sbjct: 40 FVPLEGER-DGHEFIASAI-NNGASATL-------WKKGHPNKPEDIAVIEVDDPLAAMQ 90
Query: 123 CYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG 180
AR + + +VG+TGS GK+TTK MIA L S NV ++ N+NN +GV ++++
Sbjct: 91 ELARYYLRKVNPTVVGITGSNGKTTTKDMIAAVL-SKRFNVHKTQANFNNEIGVPMTILE 149
Query: 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240
+ +I VLEMGM G++ L+ + P++ V+ +G++H+E GS + +A AK EI
Sbjct: 150 MKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITD 209
Query: 241 ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
+ + N D+PL+ K FG+R D V A + +
Sbjct: 210 FLREDGEFIFNGDEPLLQERAEKLDQAKATFGFR---DEDTVHATGFKSYMHHATFTVND 266
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK 360
E KF IP G H NA AA +V FG S ++ SLSNF+P R E +G
Sbjct: 267 SEQ-KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPTANRMEWEKGDAGES 325
Query: 361 IVNDAYNANPISTRAAIDLLK--DIACNGKRVVILGDMLELGSTERESHEKILSYCCDAC 418
I++D YN+NP + RA + ++ NG+R+ +LGDMLELG E H +
Sbjct: 326 IMSDIYNSNPTAVRAVLTSFGQVEVKDNGRRIAVLGDMLELGKNSPELHAGLEDTLDPQI 385
Query: 419 IDLIGLVG 426
I+ + L G
Sbjct: 386 INEVYLYG 393
>gi|386826942|ref|ZP_10114049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Beggiatoa alba B18LD]
gi|386427826|gb|EIJ41654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Beggiatoa alba B18LD]
Length = 449
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 201/407 (49%), Gaps = 18/407 (4%)
Query: 31 EIAESVNGKILKWGPPGIIC-TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVG 89
EIA + G+++ C TDTR P + A+ GQ FD H+F+ P++ +G V
Sbjct: 8 EIARVLQGQLIGANVTITGCYTDTR--NPLTGGLYLALKGQQFDGHDFL-PQIQSQGGVA 64
Query: 90 VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSM 149
+ QV D ++V +T + +A Y R +F+ ++ +TGS GK+T K M
Sbjct: 65 ALVEQVNTGIDLPQIRV-----THTWQAAGQLARYWR-EQFNQPVIAITGSNGKTTVKEM 118
Query: 150 IALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209
L G NV + GN NN +G+ L+L ++ D VLEMG S +G+I L +A+P
Sbjct: 119 TRQILARRG-NVLATQGNLNNEIGLPLTLFTLNDKHDFIVLEMGASKRGDIAYLCELAKP 177
Query: 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKV 269
I V +HL+ S+E VAR KGEIF+ + ++N DD G RK+
Sbjct: 178 TIAAVTLCAPAHLDGFKSVEGVARTKGEIFEHLPNNGIAIINHDDFYSGLWQELAGQRKI 237
Query: 270 F-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATL 328
FG ++ + A ++ Q L V +P G H +NA AA+A A
Sbjct: 238 ITFGLQKSATI--TAQELTLAVDHAQFTLITPLGDVPIFLPLAGQHNVMNALAASACALA 295
Query: 329 FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK 388
G +L+ + L+N S V+ R + + G +++D YNANP S +AA+ +L A
Sbjct: 296 SGCALSHIQQGLNNMSAVKGRLQRYQGQKGCTVIDDTYNANPQSFKAALAVLSQYAQ--P 353
Query: 389 RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD--RVVVQC 433
R +++GDM ELG+ H+++ + I+ + VGD R VQ
Sbjct: 354 RWLVMGDMKELGTQSATFHQQLGELAKELGIERLWAVGDMSRFAVQA 400
>gi|404448274|ref|ZP_11013267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Indibacter alkaliphilus LW1]
gi|403765895|gb|EJZ26770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Indibacter alkaliphilus LW1]
Length = 432
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 194/403 (48%), Gaps = 39/403 (9%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-VCNNWDKGFVQVE 107
+ TDTR ++ K FFA+ G +F+A+EF L + VI + D+ + V+
Sbjct: 16 VSTDTRHIS--KGNIFFALKGPNFNANEFAPKALEAGASLVVIDEEKFAVAGDERYFLVD 73
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L +L +A Y R + S ++G+TGS GK+T+K ++ L++ + GN
Sbjct: 74 -----DALTALQQLANY-RRKQLSIPIIGLTGSNGKTTSKELLHAVLKT-KYRTAATVGN 126
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L+ I +IA++EMG + +G+I EL +A P + N+G +HLE +G
Sbjct: 127 LNNHIGVPLTLLAIPDDTEIAIIEMGANKQGDIKELCDIADPTHGFITNIGKAHLEGMGG 186
Query: 228 LEDVARAKGEIFQESKLGDVCV-LNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
E V + K E+FQ + V +N+ DP+++N+ R V + +
Sbjct: 187 PEGVLKTKTELFQHLRENKGTVFINSQDPILSNM-AKRFENPVLYPTK------------ 233
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSP---------GLHLAINACAAAAVATLFGVSLAQVG 337
G +VV E V+F + G + N A + FGVS+ +
Sbjct: 234 ---GDFCEVVFEDANPFVQFRVEGDSTIHTTHLIGAYNFGNIANALTIGKFFGVSMQEAV 290
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
++ ++P MRS+L+ RS + I+ DAYNANP S AID + +++ILGDM
Sbjct: 291 EAVKAYNPSNMRSQLVEKRSNL-IILDAYNANPSSMEVAIDTFGKMTGKKHKMIILGDMY 349
Query: 398 ELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKWRKWSM 440
ELG + E H K+ D I G VQ K M
Sbjct: 350 ELGDSTEEEHAKLGELVSKYEFDKICFTGK--YVQAALSKAPM 390
>gi|163939991|ref|YP_001644875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
weihenstephanensis KBAB4]
gi|163862188|gb|ABY43247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
weihenstephanensis KBAB4]
Length = 454
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 177/329 (53%), Gaps = 8/329 (2%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL +L +A + R ++G+TGS GK+T K +I+ L S V ++ GN+N+++
Sbjct: 87 DTLFALQQLAQFYRKG-LDVKVIGITGSNGKTTVKDIISTIL-STTHRVHKTKGNFNSQI 144
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ L+++ + R + +LEMGMS KG+I L+++A+P++ ++ +G SHLE+LGS E+++
Sbjct: 145 GLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLETLGSREEIS 204
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
+AK EI K + + N D+ L++ + FG + D L V G
Sbjct: 205 KAKLEIIDGLKEEGLLLYNGDETLLSRKNNVLVLECKSFGEKDTND--LFPTNVQLDEYG 262
Query: 293 VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
V L + +++ +P G H +N AV + V ++ +L + MR +
Sbjct: 263 VHFKLNDSK--IQYDVPLHGKHNILNTIVGIAVGQFYNVPTEKIQDALRQINITHMRFQF 320
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
L +++G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG H +I
Sbjct: 321 LTAKTGFTIINDAWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKEAETYHREIGK 380
Query: 413 YCCDACIDLIGLVGD--RVVVQCKWRKWS 439
I + G+ +V + +K+
Sbjct: 381 MLNQENISYVFTYGEMAEIVAEEARKKYD 409
>gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
brookii D9]
gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
brookii D9]
Length = 437
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 199/366 (54%), Gaps = 30/366 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR+L P + F A+ G+ FD H+F+ + +G V I + + + ++V
Sbjct: 33 IQTDTRVLQPG--EIFLALGGEKFDGHQFVEMAI-ARGAVAAIVDYTYDYPNLPVIKVS- 88
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NTLN+ +A + R +F ++GVTGSVGK+TTK +IA L + G V ++YGN+
Sbjct: 89 ----NTLNAYQELAKWWR-GQFGIPVIGVTGSVGKTTTKELIASVLGTRG-KVHKTYGNF 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EM M G+G+I EL +A+P I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELSEGDDFAVIEMAMRGRGQIGELTHIAKPNIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
+ +A AK E+ E V VLN D+PL+ ++V+ G +++ +
Sbjct: 203 QAIAEAKCELLAEMPNDSVAVLNYDNPLLMTTA-----KQVWSG-------EVISYGFSG 250
Query: 289 GGLGVQVVLEKEREMVKFVIPSP--GLHLAINACAAAAVATLFGV--SLAQVGISLSNFS 344
G + ++V ++ E+ +P P G+H N AA AVA + V L + GI N +
Sbjct: 251 GDIQGKLVDYQKIEVGGMTLPLPLTGVHNGSNFLAALAVAKVLDVDWKLLEAGI---NVT 307
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
Q RS+ I I+++ YNA P + AA++LL +++ +LG M ELG
Sbjct: 308 MPQGRSQSWKLPKDIMILDETYNAAPEAMLAALELLAQTPGR-RKIAVLGAMKELGERSA 366
Query: 405 ESHEKI 410
+ H+++
Sbjct: 367 KLHQQV 372
>gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani
ATCC 19707]
gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Nitrosococcus oceani AFC27]
gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrosococcus oceani ATCC 19707]
gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
subfamily [Nitrosococcus oceani AFC27]
Length = 454
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/366 (35%), Positives = 183/366 (50%), Gaps = 28/366 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P F A+ G+ FD H FI+ + KG + Q N+ Q+E
Sbjct: 30 VSTDTRSLVPGS--LFVALRGERFDGHAFIA-QAREKGASAALLEQAINDP---LPQIEV 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
L L AC+ RF +V VTGS GK+T K MIA L V + GN
Sbjct: 84 ADARIALGQLA--ACW--RQRFVRPIVAVTGSNGKTTVKEMIASVL-GWREPVLATRGNL 138
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ +D + AV+EMG + GEI L+R+ RP++ ++ N G +HL+ G L
Sbjct: 139 NNDIGVPLTLLELDTSHRFAVIEMGANRPGEIEYLSRLTRPQVALITNAGPAHLDGFGDL 198
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDP-------LVANLTVPRGVRKVFFGWRRGCDVRL 281
+ VARAKGEIFQ V +LNADDP L L V + FG + +V
Sbjct: 199 KGVARAKGEIFQGMGSEGVAILNADDPCFSYWRDLAGELPV------IGFGLSKSAEVTA 252
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
+ G ++ + K +P PG H +NA AA+A GV + SL+
Sbjct: 253 RHVVASTGSSCFTLITPAGK--AKIQLPLPGRHNVLNALAASAATIALGVDRQHLSASLA 310
Query: 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
S V R ++ G+++++D YNANP S +AA++LL G+R ++LGD ELG
Sbjct: 311 ALSSVPGRLQIRRGIGGMRLLDDTYNANPASFQAALELLAKFP--GERALVLGDFAELGE 368
Query: 402 TERESH 407
H
Sbjct: 369 EAASLH 374
>gi|404329218|ref|ZP_10969666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Sporolactobacillus vineae DSM 21990 = SL153]
Length = 458
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 194/364 (53%), Gaps = 14/364 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY--GKGCVGVIGNQVCNNWDKGFVQV 106
I TD+R N F + G HFD H F++ + + + + + N + F
Sbjct: 27 IMTDSRKRVING--LFIPLVGDHFDGHRFLADAIRNGAQAALWMERKPLPENLPEAFPLF 84
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+TL +L +MA A ++ ++ +TGS GK+TTK M+ ++ S F++ G
Sbjct: 85 LVK---DTLIALQSMA-KAFLTQCRPKVIAITGSNGKTTTKDMV-YSIVSETFKAFKTEG 139
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+++ + ++ VLEMGM+ GE+ L+++A+P+I V+ N+G+SH+E LG
Sbjct: 140 NHNNHIGVPLTILSMPEDTEVLVLEMGMNHFGEMTFLSQLAKPDIAVITNIGESHIEYLG 199
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+ +A+AK E+ K +++ D+PL+ N+ + + G++ + ++ V
Sbjct: 200 NRAGIAKAKLEMINGLKKNGSLIIDGDEPLLTNIHT-NAFKIIRCGYQDENEWKIT--DV 256
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G G + L + ++ +P G H NA + VA L G++ V L++ S
Sbjct: 257 KEGTDGYRFSL--NHGLSEYKVPVLGRHNVKNAVFSLTVAKLLGINAQSVIEGLNHLSLT 314
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
+MR E + R+G ++ D YNA+P S +A+++ LKD+ +RV +LGDM ELG E +
Sbjct: 315 KMRFEKIAGRNGSLLIRDCYNASPTSMKASLETLKDLPGFTRRVAVLGDMYELGKDEEKL 374
Query: 407 HEKI 410
H +
Sbjct: 375 HRSV 378
>gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus johnsonii ATCC 33200]
gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus johnsonii ATCC 33200]
Length = 455
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/409 (30%), Positives = 197/409 (48%), Gaps = 35/409 (8%)
Query: 31 EIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFIS-------- 79
EIA+++N + G +I + D+R PN F + G D H+F+S
Sbjct: 7 EIAKALNSSV-NMGEDKVITSVVFDSRKATPN--SLFIPLDGAR-DGHDFVSNAMANGAE 62
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L+ KG G+ D ++VE + L +L N+A Y + + +VG+TG
Sbjct: 63 ATLWKKGHEGM-------PTDVPVIEVE-----DPLTALQNLAKYYL-GKVNPTVVGITG 109
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+A L S NV ++ N+NN +GV ++++ + + +I VLEMGM G+
Sbjct: 110 SNGKTTTKDMVAAVL-SKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQ 168
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
+ L+ + RP++ V+ +G++H+E G+ + +A AK EI K + N D+PL+
Sbjct: 169 LHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEE 228
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
K FG+R V + E +F IP G H NA
Sbjct: 229 RAAKIKQEKSTFGFREEDTVFATTFR----SYMHHATFEVNGSTQQFKIPMIGKHNVSNA 284
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA +V FG + Q+ +L+NF+P R + G I++D YN+NP + RA
Sbjct: 285 LAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDDVYNSNPTAVRAVTTS 344
Query: 380 LKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ G+R+ +LGDMLELG + H + + A I+ + L G
Sbjct: 345 FGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYG 393
>gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella canis ATCC 23365]
gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella canis ATCC 23365]
Length = 481
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 204/436 (46%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E + G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSCKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|376275952|ref|YP_005116391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella canis HSK A52141]
gi|363404519|gb|AEW14814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Brucella canis HSK A52141]
Length = 481
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 204/436 (46%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E + G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSCKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|229133031|ref|ZP_04261872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST196]
gi|228650449|gb|EEL06443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bacillus cereus BDRD-ST196]
Length = 460
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 167/298 (56%), Gaps = 6/298 (2%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL +L +A + R ++G+TGS GK+T K +I+ L S V ++ GN+N+++
Sbjct: 93 DTLFALQQLAQFYRKG-LDVKVIGITGSNGKTTVKDIISTIL-STTHRVHKTKGNFNSQI 150
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ L+++ + R + +LEMGMS KG+I L+++A+P++ ++ +G SHLE+LGS E+++
Sbjct: 151 GLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLETLGSREEIS 210
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
+AK EI K + + N D+ L++ + FG + D L V G
Sbjct: 211 KAKLEIIDGLKEEGLLLYNGDETLLSRKNNVLVLECKSFGEKDTND--LFPTNVQLDEYG 268
Query: 293 VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
V L + +++ +P G H +N AV + V ++ +L + MR +
Sbjct: 269 VHFKLNDSK--IQYDVPLHGKHNILNTIVGIAVGQFYNVPTEKIQDALRQINITHMRFQF 326
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L +++G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG H +I
Sbjct: 327 LTAKTGFTIINDAWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKAAETYHREI 384
>gi|425469704|ref|ZP_18848619.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9701]
gi|389880443|emb|CCI38826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9701]
Length = 454
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 137/392 (34%), Positives = 205/392 (52%), Gaps = 44/392 (11%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + P Q F A+ G +F+ H+FI + KG +I +Q V V
Sbjct: 33 INTDSRSIEPG--QAFLALKGDNFNGHDFIDMAIE-KGAATLIVDQP--------VSVNS 81
Query: 109 NGNV------NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162
+ N+ NTL + + + RN +F+ ++ +TGSVGK+TTK +IA L + G V
Sbjct: 82 SKNIPVFLVHNTLETYQQLGHWWRN-QFTIPVIAITGSVGKTTTKELIASLLATRG-KVH 139
Query: 163 QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222
++ N+NN +GV +L+ +D D AV+EMGM G+GEI LA++A+P I V+ NVG +H+
Sbjct: 140 KTLANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQIAQPTIAVITNVGTAHI 199
Query: 223 ESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR--GVRKVFFGWRRGCDVR 280
LGS +A AK E+ ES G + VLN D PL+ T R + +G+ G D+
Sbjct: 200 GRLGSQAAIAEAKCELLAESPSGSIAVLNYDHPLLTE-TAKRVWQGETITYGF-SGGDI- 256
Query: 281 LVAAQVANGGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGV--SLAQVG 337
+G + L R + F +P G H A+N AA AVA + G+ + Q G
Sbjct: 257 ----------VGELLDLTTLRVNGLDFNLPLSGRHHALNFMAALAVAKILGIDWTSLQEG 306
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDM 396
I ++ S R ++ I ++++ YNA S AA+DLLK A G+R + +LG M
Sbjct: 307 IKVNLPSGRAKRYQI---EPDILLLDETYNAGLESMLAALDLLK--ATPGQRHIAVLGTM 361
Query: 397 LELGSTERESHEKILSYCCDACID-LIGLVGD 427
ELGS + H ++ ID L LV D
Sbjct: 362 KELGSFSEQLHRQVGERVQKLGIDRLFVLVDD 393
>gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylocystis sp. ATCC 49242]
gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylocystis sp. ATCC 49242]
Length = 475
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 199/420 (47%), Gaps = 32/420 (7%)
Query: 23 NSPIWT----INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
P+W+ + + V+G + + + DTR L FFAI G+ D HEF+
Sbjct: 3 QEPLWSGLALVGALHARVSGALAREATG--VSIDTRTL--KAGDLFFAIKGEARDGHEFV 58
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVL 134
VI + G G + + SL + AR R S +
Sbjct: 59 RAAFEKGAAAAVIDEAHAAEFS-------GAGPLLIVKDVQRSLEMLGKRARE-RSSAFI 110
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+TGSVGK++TK M L L G S ++NN+ GV L+L + A V E+GM
Sbjct: 111 AAITGSVGKTSTKDMTRLMLSRFG-ETHASVASYNNQWGVPLTLARMPAASRFGVFELGM 169
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
+ GEI L RP + VV V HLE S+E +A AK EIF G V ++N DD
Sbjct: 170 NHAGEITGLVAQVRPHVAVVTRVAAVHLEHFASVEGIADAKAEIFSALD-GGVAIINRDD 228
Query: 255 PLVANL---TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311
L P FG G + RL++ + + G V+ + +R + + I +P
Sbjct: 229 ATYERLAAAAAPTAGHIFSFGESEGAEARLLSYKGIDDGCEVEADILGKR--LAYRIGAP 286
Query: 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS--ELLVSRSG-IKIVNDAYNA 368
G H+A+N+ AA +A +F + + + ++L++F+P R E L++ SG +++++YNA
Sbjct: 287 GKHIALNSLAALLIAAVFDIDVEKAALTLADFTPPSGRGAREKLMAPSGPFTLIDESYNA 346
Query: 369 NPISTRAAIDLL--KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
NP S R+A +LL G+R+ +LGDMLELG E H ++ A DL+ G
Sbjct: 347 NPTSMRSAFELLGATTPGAGGRRIAVLGDMLELGPCGAELHGELAVDLARAKCDLLFTAG 406
>gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
gi|384198888|ref|YP_005584631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis ATCC 15697 = JCM
1222]
Length = 483
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 209/417 (50%), Gaps = 27/417 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ EIA++V+G+++ T D+R P F AI G+H D H+F++
Sbjct: 5 SVEEIAKAVDGRLIGDADSESRSTNTVSDSRQAGPGS--VFVAIRGEHVDGHDFVAKTAG 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVTGS 140
V ++ ++V ++ G Q+ V+ L L R + F ++G+TGS
Sbjct: 63 QGATVAIVDHEVESD---GLPQIVVKDTVDALGELARHNIVRRRELDGDFD--IIGLTGS 117
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S GEI
Sbjct: 118 VGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEI 176
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V +
Sbjct: 177 ARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPM 236
Query: 261 TVPRGVRKVFFGW--RRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
++FG + +VR + +++ + + PG H +N
Sbjct: 237 AGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMN 296
Query: 319 ACAAAAVATLFGV---SLAQVGISLSNFSPVQMRSELLVSRSG--IKIVNDAYNANPIST 373
A AAA VA +G+ ++A++ S SP +M + V+R G +++D++NANP S
Sbjct: 297 ALAAATVAMRYGMAPETVARILASQHTISPHRM-ALSTVNREGTSFTLIDDSFNANPDSM 355
Query: 374 RAAIDLLKDIACN-GK---RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+A ++ LK N GK RV +LG MLELG+ E H I +Y + ID I VG
Sbjct: 356 KAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTSIGTYAAELGIDAIIAVG 412
>gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
[Clostridium cf. saccharolyticum K10]
Length = 476
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 195/390 (50%), Gaps = 24/390 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIG----------NQVCNN 98
I D+R K F + G+ D H FI L +G V
Sbjct: 29 ISIDSR--TAGKKALFVPLIGEKQDGHRFIMAALE-QGAAAVFTSEHSEESEEVKAAAKR 85
Query: 99 WD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL 157
W F+QV+ +T +L + Y R SR + LVG+TGSVGK+TT+ M+A AL S
Sbjct: 86 WPGAAFIQVD-----DTRRALQELGAYIR-SRLTIPLVGITGSVGKTTTREMVAAAL-SA 138
Query: 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
G +VF++ N N++VGV L+L I +I VLE+GMS GE+ +A++A ++ V+ NV
Sbjct: 139 GFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNV 198
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
G +H+E+LG+ E++ R K +I + LN D+ L+ G + V+FG
Sbjct: 199 GVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDNDLLGISRAREGHKTVYFGTGENA 258
Query: 278 DVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337
D R V ++ G +V + R + + G H +NA AA AVA GV L
Sbjct: 259 DYRAVDIRLERGCPSFTMVHGERR--IPVTLSVMGEHNVLNALAALAVADYNGVPLEAAA 316
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
L F+ + R ++ + GI +++D YNA+P S +AA+ +L +RV +L DM
Sbjct: 317 EKLREFTGFKNRQQIR-EKQGITVIDDTYNASPDSMKAALRVLSSFGQARRRVAVLADMK 375
Query: 398 ELGSTERESHEKILSYCCDACIDLIGLVGD 427
ELG ER H ++ + ++L+ G+
Sbjct: 376 ELGPDERRFHREVGEFLAGEKVELLVTFGE 405
>gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Bdellovibrio bacteriovorus HD100]
gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Bdellovibrio bacteriovorus HD100]
Length = 473
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 201/389 (51%), Gaps = 21/389 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ----VCNNWDKGFV 104
I TDTR A + Q F A+ G+ FDAH F+ + +G G++ ++ + DK +
Sbjct: 28 IGTDTR--AQLQGQLFIALKGEAFDAHNFLDKAVE-QGASGLLVHEENALIEKLKDKATI 84
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
+ +TL +L + +AR+ S +VG+TGS GK+TTK A AL ++V +
Sbjct: 85 LLV----PDTLKALQKLGNWARHES-SARIVGITGSNGKTTTKEFTA-ALVGSSMDVHYN 138
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
G++NN GV +L+ + D+A++EMGM+ GEI EL +A P++ V VG +H+E
Sbjct: 139 KGSFNNHWGVPFTLLQLPPNKDVAIIEMGMNHAGEITELVHIAEPDVVVCTMVGRAHMEF 198
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV------PRGVRKVFFGWRRGCD 278
G++E VA AK EI++ + V + N D+ N+ V P+ F D
Sbjct: 199 FGTIEKVAEAKEEIYEAAGDQTVRIYNLDNTQTHNMYVKARDKFPKARILTFSSEDPRAD 258
Query: 279 VRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGI 338
V L+ + + + ++ + E + + G N AAA+V G++ AQV
Sbjct: 259 VHLMISSMNMSEISIKGSIGGEAGTAR--VQVFGAQNLTNLMAAASVGLAVGMTPAQVWA 316
Query: 339 SLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLE 398
L R++L+ +SG +++ DAYNANP S +A ID +K + G++V + G M E
Sbjct: 317 GLPACKTNWGRNQLVHLKSGAQMIFDAYNANPDSMKALIDNMKLLTVPGRKVGVFGQMRE 376
Query: 399 LGSTERESHEKILSYCCDACIDLIGLVGD 427
LGS HE++ ++ A D + +GD
Sbjct: 377 LGSASANLHEELGTWVGQAGFDKVYFIGD 405
>gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chelativorans sp. BNC1]
gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Chelativorans sp. BNC1]
Length = 477
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 205/414 (49%), Gaps = 23/414 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ +V G+ P G+ I D+R L + + FFAI G FD H+F + +
Sbjct: 4 LWTSDDLVAAVGGRPFGALPEGVTGISIDSRTL--QRGEAFFAIKGDRFDGHDFATLAMA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ VI + + V V + + A +R G ++ VTGS GK
Sbjct: 62 AGAGLLVISEEKLPALGRLTVP---KVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGK 118
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ AL S+G V + ++NN GV LSL + D A+ E+GM+ GEI L
Sbjct: 119 TTTKEMLRHALSSVG-TVHAAARSFNNHWGVPLSLARLPAGADFAIFEIGMNHAGEIEPL 177
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVANL 260
++ +P I +V + +HL SL+++A AKGEIF G ++N DD L+A++
Sbjct: 178 TQLVKPHIAIVTLIAAAHLGHFKSLDEIAEAKGEIFAGVVPGGHAIINRDDQRFKLLADM 237
Query: 261 TVPRGVRKVFFGWRRGCDVR---LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
G+R V W G +VR +A Q G V + +E++ I +PG H+
Sbjct: 238 AAEAGIRNV---WGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGR-IGAPGRHMVQ 293
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL---VSRSGIKIVNDAYNANPISTR 374
NA + L G ++++ +L +FS R +L + +++++YNANP S +
Sbjct: 294 NALSVIGAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIGEGMFTLIDESYNANPASMK 353
Query: 375 AAIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
AA+ +L ++ G+R+ +LGDMLELG + H + D++ L G
Sbjct: 354 AALQVLDSSPVSNGGRRIAVLGDMLELGVHSEKLHAALGDIIAGTKTDILLLAG 407
>gi|423516944|ref|ZP_17493425.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA2-4]
gi|401164361|gb|EJQ71696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA2-4]
Length = 460
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 177/329 (53%), Gaps = 8/329 (2%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL +L +A + R ++G+TGS GK+T K +I+ L S V ++ GN+N+++
Sbjct: 93 DTLFALQQLAQFYRQG-LDVKVIGITGSNGKTTVKDIISTIL-STTHRVHKTKGNFNSQI 150
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ L+++ + R + +LEMGMS KG+I L+++A+P++ ++ +G SHLE+LGS E+++
Sbjct: 151 GLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLETLGSREEIS 210
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG 292
+AK EI K + + N D+ L++ + FG + D L V G
Sbjct: 211 KAKLEIIDGLKEEGLLLYNGDETLLSRKNNVLVLECKSFGEKDTND--LFPTNVQLDEYG 268
Query: 293 VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
V L + +++ +P G H +N AV + V ++ +L + MR +
Sbjct: 269 VHFKLNDSK--IQYDVPLHGKHNILNTIVGIAVGQFYNVPTEKIQDALRQINITHMRFQF 326
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
L +++G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG H +I
Sbjct: 327 LTAKTGFTIINDAWNASPSSMKAAIETLEKLNAYEKKIIVIGDMLELGKEAETYHREIGK 386
Query: 413 YCCDACIDLIGLVGD--RVVVQCKWRKWS 439
I + G+ +V + +K+
Sbjct: 387 MLNQENISYVFTYGEMAEIVAEEARKKYD 415
>gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Alkalilimnicola ehrlichii MLHE-1]
gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Alkalilimnicola ehrlichii MLHE-1]
Length = 451
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 194/385 (50%), Gaps = 24/385 (6%)
Query: 27 WTINEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+T+ E+AE G + G G + D+R LAP F A+ G+ D H+FI+
Sbjct: 4 FTLQEVAEWTGGT--RHGDAVTVGEVGLDSRGLAPGG--LFVAMAGERVDGHDFIADAAR 59
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
++ + +W V+V +T +L + R + V VGVTGS GK
Sbjct: 60 RGAAAALV--ERDGDWPLPVVRV-----ADTRAALQALGAAWRRRLAARV-VGVTGSNGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+T K MIA L G + GN NN +GV L+L+ +DR AV+EMG + GEI L
Sbjct: 112 TTVKEMIAAILARRGAT-LATRGNLNNELGVPLTLLRLDREHRYAVIEMGANAPGEIARL 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+A PE+ V+ N G +HLE G L VARAKGE+F V V+NADDP
Sbjct: 171 TAIAAPEVAVITNAGPAHLEGFGDLAGVARAKGELFLGLPDAGVAVVNADDPQAPTWYAL 230
Query: 264 RGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
G R+ FG DVR A+ A G +Q+ R V+ +P PG H +NA AA
Sbjct: 231 VGDRRCLRFGRGADADVR-ATAETAGGHFELQI--PGGRHPVR--LPLPGRHNVMNALAA 285
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AAVA V L + L S V R + R +I++D YNANP S +AA+D+L
Sbjct: 286 AAVAVALEVPLGDIVAGLEACSGVAGRLQWRTGREDCRILDDTYNANPASLQAALDVLA- 344
Query: 383 IACNGKRVVILGDMLELGSTERESH 407
A +G+R ++LGDM ELG+ H
Sbjct: 345 -AEHGERWLVLGDMGELGAGAEALH 368
>gi|425439787|ref|ZP_18820102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9717]
gi|389719910|emb|CCH96324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9717]
Length = 454
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 133/400 (33%), Positives = 209/400 (52%), Gaps = 47/400 (11%)
Query: 28 TINEIAESV----NGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++N++A+ + NG I + P ++ TD+R + Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQDNGDI-SFSPDSLVSGINTDSRSI--ESGQAFLALKGDNFNGHDFIDM 62
Query: 81 ELYGKGCVGVIGNQVCNNWDKG----FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
+ ++ V N+ VQ NTL + +A + RN +F+ ++
Sbjct: 63 AIEKGAATLIVDQPVSVNYSSNIPVFLVQ-------NTLETYQQLAHWWRN-QFTIPVIA 114
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
+TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D D AV+EMGM G
Sbjct: 115 ITGSVGKTTTKELIASVLATRG-KVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMRG 173
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256
+GEI LA++A+P I V+ NVG +H+ LGS +A +K E+ ES + VLN D PL
Sbjct: 174 RGEIALLAQIAQPTIAVITNVGTAHIGRLGSESAIAESKCELLAESPSSSIAVLNYDHPL 233
Query: 257 VANLTVPR--GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER-EMVKFVIPSPGL 313
+ T R K+ +G+ G D+ +G + L R + F +P G
Sbjct: 234 LTE-TAKRVWQGEKITYGF-SGGDI-----------VGELLDLTTLRVNGLDFNLPLSGR 280
Query: 314 HLAINACAAAAVATLFGV--SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371
H A+N AA AVA + G+ + Q GI ++ S R +L I ++++ YNA
Sbjct: 281 HHALNFMAALAVAKILGIDWTSLQEGIKVNLPSGRAKRYQL---EPDILLLDETYNAGLE 337
Query: 372 STRAAIDLLKDIACNGKR-VVILGDMLELGSTERESHEKI 410
S AA+DLLK A G+R + +LG M ELGS + H ++
Sbjct: 338 SMLAALDLLK--ATPGQRHIAVLGTMKELGSFSEQLHRQV 375
>gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. M62/1]
gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. M62/1]
Length = 480
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 195/390 (50%), Gaps = 24/390 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIG----------NQVCNN 98
I D+R K F + G+ D H FI L +G V
Sbjct: 33 ISIDSR--TAGKKALFVPLIGEKQDGHRFIMAALE-QGAAAVFTSEHSEESEEVKAAAKR 89
Query: 99 WD-KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL 157
W F+QV+ +T +L + Y R SR + LVG+TGSVGK+TT+ M+A AL S
Sbjct: 90 WPGAAFIQVD-----DTRRALQELGAYIR-SRLTIPLVGITGSVGKTTTREMVAAAL-SA 142
Query: 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNV 217
G +VF++ N N++VGV L+L I +I VLE+GMS GE+ +A++A ++ V+ NV
Sbjct: 143 GFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNV 202
Query: 218 GDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC 277
G +H+E+LG+ E++ R K +I + LN D+ L+ G + V+FG
Sbjct: 203 GVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDNDLLGISRAREGHKTVYFGTGENA 262
Query: 278 DVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337
D R V ++ G +V + R + + G H +NA AA AVA GV L
Sbjct: 263 DYRAVDIRLERGCPSFTMVHGERR--IPVTLSVMGEHNVLNALAALAVADYNGVPLEAAA 320
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
L F+ + R ++ + GI +++D YNA+P S +AA+ +L +RV +L DM
Sbjct: 321 EKLREFTGFKNRQQIR-EKQGITVIDDTYNASPDSMKAALRVLSSFGQARRRVAVLADMK 379
Query: 398 ELGSTERESHEKILSYCCDACIDLIGLVGD 427
ELG ER H ++ + ++L+ G+
Sbjct: 380 ELGPDERRFHREVGEFLAGEKVELLVTFGE 409
>gi|431794713|ref|YP_007221618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784939|gb|AGA70222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 478
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 187/390 (47%), Gaps = 19/390 (4%)
Query: 50 CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN 109
C D+R++ FFA+ G+ D H++I V V + N + + EG
Sbjct: 27 CIDSRLV--KDGNIFFALVGEKVDGHDYIKAAWQKGASVVVAEKERLKNRPEISIP-EGK 83
Query: 110 GNVNTLNSLVNMACYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+ L+ M A+ + +V +TGS GK+TTK M+ L S V ++ N
Sbjct: 84 ALIQVDLGLIAMQSLAQTWVRQLGAKVVAITGSNGKTTTKDMVTAVL-SQKYRVHKNLEN 142
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV ++++ +I VLEMGM G G+I L +ARP+I V+ N+G +HLE LG+
Sbjct: 143 QNNELGVPMTILNASENTEILVLEMGMRGLGQIAFLCGIARPDIGVITNIGTTHLELLGT 202
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR---RGCDVRLVAA 284
E++ARAK E+ Q VLN++D L V + F+G D+R +
Sbjct: 203 QENIARAKWELIQALPPEGFAVLNSEDEWSVKLAQESSVHQFFYGLGGKFHKPDLRGLKL 262
Query: 285 QVANGGLGVQVVLEKEREM--------VKFVIPSPGLHLAINACAAAAVATLFGVSLAQV 336
G LG + +E E VK +P PG H ++A AA +V L V L +
Sbjct: 263 -TPFGTLGTRFTVENENRSQVPVLTSPVKVDLPLPGEHNVLDALAALSVGLLLEVPLQEG 321
Query: 337 GISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDM 396
L+ +MR EL +++D YNANP S +A++ +L++ + ILG+M
Sbjct: 322 CEGLATMELSRMRLELQQGIYESTLISDVYNANPTSMKASLQVLRE-RGGASTLAILGEM 380
Query: 397 LELGSTERESHEKILSYCCDACIDLIGLVG 426
ELG RE H ++ D I + VG
Sbjct: 381 YELGEASREGHYEVGQAVADLGISELITVG 410
>gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
punctiforme PCC 73102]
gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
punctiforme PCC 73102]
Length = 451
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 194/365 (53%), Gaps = 28/365 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R L + F A+ G FD H+F+ + ++ + N GF +
Sbjct: 33 IQTDSRTL--KLGEVFVALRGDKFDGHKFVPTAIAKGAIAAIVDFEYEN---PGFPVLRV 87
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R+ RF+ ++GVTGSVGK+TTK +IA L + G V ++YGN+
Sbjct: 88 K---DTLKAYQQIGRWWRD-RFNIPVIGVTGSVGKTTTKELIAAVLGTKG-QVHKTYGNY 142
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + D AV+EM M G+G+I EL ++ARP I V+ NVG +H+E LGS
Sbjct: 143 NNEIGVPKTLLELGAENDYAVIEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLGSE 202
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E +A AK E+ E V ++N D+PL+ KV+ G ++ +
Sbjct: 203 EAIAEAKCELLAEMAADSVAIINHDNPLLMATAA-----KVWHG-------EVLTYGFSG 250
Query: 289 GGLGVQVVLEKEREM--VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + Q++ + E+ ++ +P PG H A N AA AVA + G+ + + + P
Sbjct: 251 GDIQGQLLDNDQMEVAGIQLPLPLPGRHNATNFLAALAVAKVLGIDWSNLKAGVEVDMPT 310
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTERE 405
RS+ + + I+++ YNA P + A++ LL D GKR + +LG M ELG ++
Sbjct: 311 G-RSQRFTLPNDVIILDETYNAAPEAMIASLQLLAD--TPGKRKIAVLGAMKELGERSQQ 367
Query: 406 SHEKI 410
H+++
Sbjct: 368 LHQRV 372
>gi|393199136|ref|YP_006460978.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris
StLB046]
gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris
StLB046]
Length = 456
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 177/323 (54%), Gaps = 17/323 (5%)
Query: 117 SLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA 175
+L MA CY RN +G+TGS GK+++K ++A AL S V ++ GN+NN++G+
Sbjct: 89 ALQKMAECY-RNEH-QATFIGITGSNGKTSSKDILAGAL-SPYFKVQKTIGNFNNQLGLP 145
Query: 176 LSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAK 235
++++ +D +++VLEMGMSG GEI L +ARP ++ N+G++H++ LGS E +A+AK
Sbjct: 146 ITILQLDEDTEVSVLEMGMSGFGEIEFLTNLARPHYAIITNIGEAHMQDLGSREGIAKAK 205
Query: 236 GEIFQESKLGDVCVLNADDPLVANLTVPR-GVRKVFFGWRRGCDVRLVAAQVANGGLGVQ 294
EI + + + D+PL+ NL ++ FG+ + ++ L A+Q+ G
Sbjct: 206 FEIVKGLSEEGILFYDGDEPLLQNLVAKTPHLKTQAFGFSQ--ELNLAASQIKATAQGSS 263
Query: 295 VVLEKEREMVK--FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352
+E +++ F I G H N +A V+ G++ Q+ +L MR +
Sbjct: 264 FHVEG---LIQGDFFISVLGEHQVKNTLSAMLVSKSLGLTDEQIREALKKVVLTDMRMQ- 319
Query: 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412
LV + +NDAYNA P S AAI ++ ++ ++LGDMLELG+ E++ HE I
Sbjct: 320 LVPVGDLLFINDAYNAAPTSMHAAIQFVEQTTIRNEKWLVLGDMLELGNEEKKMHEGIAG 379
Query: 413 YCCDACIDLIGLVGDRVVVQCKW 435
+ I + L G R+ KW
Sbjct: 380 HIHPEEISYVCLYGPRM----KW 398
>gi|386817494|ref|ZP_10104712.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thiothrix nivea DSM 5205]
gi|386422070|gb|EIJ35905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thiothrix nivea DSM 5205]
Length = 448
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 134/400 (33%), Positives = 201/400 (50%), Gaps = 22/400 (5%)
Query: 29 INEIAESVNGKILKWGPP-GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
++E+A+ GK+L I D+R + F A+ G+ FDAH+F+ P++ GK
Sbjct: 6 LSEVAQMAGGKLLGNDVAVERIERDSRQV--KAGDLFLALKGERFDAHDFV-PQVAGKAS 62
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
++ V D QV V+ + + A RF LVG+TGS GK+T K
Sbjct: 63 AALLSQAV----DANIPQVL----VDDVRLALGRLAAAWRKRFHKPLVGLTGSNGKTTLK 114
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M+ L G + + GN NN +G+ L+L+ + D AV+EMG + GEI L R+A
Sbjct: 115 EMLTAILSQQG-HTLATAGNLNNDIGMPLTLLRLCAQDDFAVIEMGANHFGEIDYLTRIA 173
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
P++ V+ N G +HLE G + VARAKGEIF V ++NADD + R
Sbjct: 174 CPDVAVLNNAGAAHLEGFGDIAGVARAKGEIFNGLGEQGVAIINADDTYASYWLGLNPTR 233
Query: 268 KVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVA 326
KV FG D++ + +N +QVV ++ V + G H +NA AA A A
Sbjct: 234 KVLTFGMNAAADIQ-GSVDASN---CLQVVANGQQ--VSINLKLLGRHNMMNALAATAAA 287
Query: 327 TLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN 386
G+ L + L + PV+ R + G +++D YNANP ST AA+++L +
Sbjct: 288 LALGIKLETIRSGLESLQPVKGRLNPKTGQHGGMVIDDTYNANPTSTAAAVEVLASL--Q 345
Query: 387 GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G++V++LGDM ELG T + H I A ID + +G
Sbjct: 346 GRKVLVLGDMGELGETGAQLHAAIGQQAVQAGIDAVFTLG 385
>gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
Com15]
gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
Com15]
Length = 450
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 195/406 (48%), Gaps = 24/406 (5%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
TI EIA++V + + D+R + + F + G D HEFI
Sbjct: 4 TIQEIAQAVGSECSALTKITNVEFDSRKI--TEGSLFVPLAGTR-DGHEFIQQ------- 53
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + W Q + V + L ++ +A Y + +V +TGS GK
Sbjct: 54 -AITNGASASFWSLPVEQAPKDFPVIPVADPLKAMQQLATYYL-EKVGAEVVAITGSNGK 111
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK + A L S +++ GN+NN +G+ +++ + + + VLEMGM EI EL
Sbjct: 112 TTTKDLTASVL-SEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITEL 170
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ MA+P+ + +G++H+E+LGS E +A+AK EI + V+ AD+PL+ LT
Sbjct: 171 SLMAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPLTAT 230
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
FG G DV A A G V+E E F IP PG + NA A
Sbjct: 231 LVQTVTTFGIGNG-DVH--AEVTAEGKAQTDFVVEGET----FTIPLPGSYNVTNALIAY 283
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ F +S+ ++ L++ S Q R+E L + +G I++D YNANP + +D K++
Sbjct: 284 TIGRFFELSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTFKNL 343
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+R+ +L DMLELG H ++ + +I L G+++
Sbjct: 344 PTKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQM 389
>gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
[Oxalobacter formigenes HOxBLS]
gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
[Oxalobacter formigenes HOxBLS]
Length = 454
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 197/383 (51%), Gaps = 20/383 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + P F A+ G++FDAH+F++ EL K V+ +V N+ V V
Sbjct: 26 ISTDSRHVQPG--NLFIALKGENFDAHQFLA-ELADKKVAAVLVERVPENYPLPAVIVP- 81
Query: 109 NGNVNTLNSLVNMACYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESL-GVNVFQSY 165
++ + M A+N SRF +VGVTGS GK+T K MIA + G N +
Sbjct: 82 -------DTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEMIASIFRTAWGENCLATS 134
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN+NN VGV L++ ++ AV+E+GM+ GE+ LA +A+P + +V N H E +
Sbjct: 135 GNFNNDVGVPLTVFRLNEMHRAAVIELGMNHIGEMAYLASIAQPTVGLVNNAQREHQEFM 194
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVAA 284
S+E VAR G + + + V ADD + G R+ FG+ + DV A
Sbjct: 195 QSVEAVARENGTVIRMLPENGIAVFPADDAYSSLWAGYAGGRQTMTFGFSKDADVS-AAY 253
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
++ G ++V+ E V+ + + G H NA AAAA G+ ++ L F
Sbjct: 254 RIEKGK--TRLVMSLAGEQVEMSLSTSGRHNVRNAMAAAACCLAAGIGKLEIAEGLEKFV 311
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
PV+ R E + +G +++D YNANP S RAAID+L D+ +G + +LGDM E+G
Sbjct: 312 PVRGRLERKTAFNGALLIDDTYNANPDSVRAAIDVLADMPSDG--IFVLGDMGEVGEEGE 369
Query: 405 ESHEKILSYCCDACIDLIGLVGD 427
H ++ +Y + I+ G+
Sbjct: 370 RFHAEVGAYARERRINHFFTFGE 392
>gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Janthinobacterium sp. Marseille]
gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl- D-alanine ligase
[Janthinobacterium sp. Marseille]
Length = 455
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 200/384 (52%), Gaps = 21/384 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + F A+ G+ FDAH+F+ P++ + ++ V + + V+
Sbjct: 26 VSTDSRTVGAGN--LFVALRGERFDAHDFL-PQVAERNVAAIVAETVPDGLTVPALIVQ- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESL-GV-NVFQSYG 166
+T +L +A Y R +F L+GVTGS GK+T K MIA LE+ GV N + G
Sbjct: 82 ----DTRVALGQIAHYWRR-QFKMPLIGVTGSNGKTTVKEMIAAILEAACGVDNYLATRG 136
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV L+L+ + + AV+E+GM+ GEI L+ +A P + +V N H E +
Sbjct: 137 NFNNDIGVPLTLMRLQKTCKAAVIELGMNHPGEIAVLSAIAEPTVGLVNNAQREHQEFMA 196
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADD---PLVANLTVPRGVRKVFFGWRRGCDVRLVA 283
S+E VA+ G + + V ADD PL L R V + FG+ DVR
Sbjct: 197 SVEAVAQENGAVLAGLPADGIAVFPADDEFTPLWRQLAAQRKV--LTFGFSDDADVR--- 251
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+ G + + R+ + + G+H NA AA A A G++ + L F
Sbjct: 252 CSYSANAFGSDMEISAGRQQFTVALSAAGVHNVRNALAAIACALAIGIATDAIARGLQAF 311
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
+PV R + ++ +G +++D YNANP S RAAID+L ++ R+++LG+M E+G+
Sbjct: 312 APVSGRLQRKLAANGALVIDDTYNANPDSVRAAIDVLAQMSA--PRILVLGEMGEVGNDG 369
Query: 404 RESHEKILSYCCDACIDLIGLVGD 427
R+ HE+I +Y I+ + +GD
Sbjct: 370 RQYHEEIGAYARAKSIEYVLTLGD 393
>gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
sp. 4H-3-7+YE-5]
gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
sp. 4H-3-7+YE-5]
Length = 471
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 184/380 (48%), Gaps = 17/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P+ F A++G +FD H+FI G G V VI V D Q+
Sbjct: 33 VSTDTRQINPD--DLFIALSGPNFDGHKFIDTAAQG-GAVAVI---VSRKVDTELAQILV 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L L A + V +TGS GK+T K M+A L G V + GN+
Sbjct: 87 SDTKEALGRL----GQAIKREVAPKTVAITGSSGKTTVKEMVAAILSRRG-KVLATKGNF 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ + AV+E+G + GEI + +P++ ++N +HLE GSL
Sbjct: 142 NNDIGVPLTLLRLEADHEFAVVELGANHLGEIAYTTELVKPDVATIVNAAAAHLEGFGSL 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVAAQVA 287
VARAK EIF+ + + NAD A +R F + D A V
Sbjct: 202 LGVARAKSEIFKGLGKDGLAIFNADSQFYAFWHGKYEHLRNQAFSTKDEAD--YYAQDVV 259
Query: 288 NGGLG-VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G G ++ V +P PGLH NA +AA+A G +L V L + V
Sbjct: 260 LGLNGCADFLMVTPLGKVSISLPLPGLHNVSNALVSAALAIEVGANLQDVQAGLQYMAQV 319
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R ++ +K+++D YNAN S AAIDLL A G++V++LGDM ELG R
Sbjct: 320 SGRLQVKQLSGQVKVLDDTYNANVASVNAAIDLLGSFA--GRKVLVLGDMAELGERARFY 377
Query: 407 HEKILSYCCDACIDLIGLVG 426
H+++ Y + ID + +G
Sbjct: 378 HQQVGEYAKEKGIDDLYTLG 397
>gi|343085148|ref|YP_004774443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase
[Cyclobacterium marinum DSM 745]
gi|342353682|gb|AEL26212.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Cyclobacterium
marinum DSM 745]
Length = 430
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 189/381 (49%), Gaps = 23/381 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + K FFA+ G FD +++ L V+ + ++ F+ +
Sbjct: 17 VSTDTRTI--EKGDLFFALKGPSFDGNQYAEKALLSGAKAVVVDDPKVVVDERYFLVAD- 73
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ-SYGN 167
L +L +A + R + ++G+TGS GK+TTK ++ AL G V Q +YGN
Sbjct: 74 -----VLVALQQLANHHRK-QLDIPVIGLTGSNGKTTTKELLVRALS--GKYVVQATYGN 125
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L+ + +A++EMG S +G+I EL R+A P ++ N+G +HLE +G
Sbjct: 126 LNNHIGVPLTLLSLKPGTSMAIIEMGASKQGDIDELCRIALPTHGLITNIGRAHLEGMGG 185
Query: 228 LEDVARAKGEIFQE-SKLGDVCVLNADDPLVANLTVPRGVRKVFF-GWRRGCDVRLVAAQ 285
E V + K E+FQ + G +N+ + N+ + R + V F G C Q
Sbjct: 186 TEGVLKTKTELFQYLLETGGQVFINSSQKIFTNM-IRRFDQPVLFPGPSDFC-------Q 237
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
V G V + +V G + N AA VA F VSL + ++++ + P
Sbjct: 238 VTFEGANPHVTFSLPPDQTIYVSNLIGHYNFDNIAAALCVAQYFEVSLKEAAMTIAAYVP 297
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
MRS+++V RS I I+ DAYNANP S AA+ + ++VILGDM ELG +
Sbjct: 298 ENMRSQVIVKRSNI-ILLDAYNANPSSMEAALRAFDKLDKRKHKMVILGDMYELGEYSKA 356
Query: 406 SHEKILSYCCDACIDLIGLVG 426
HEK+ +D I G
Sbjct: 357 EHEKVGELVNQMRLDKICFTG 377
>gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Anaerostipes sp. 3_2_56FAA]
gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Anaerostipes sp. 3_2_56FAA]
Length = 451
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 203/411 (49%), Gaps = 34/411 (8%)
Query: 27 WTINEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
TI +I + G +L P + TD+R + P+ F I G+ +AH+F+ L
Sbjct: 4 MTIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHT--LFVPIVGERVNAHKFVESALK 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
G + + Q EG + +TL ++ +A + RN + S ++G+TG
Sbjct: 62 DGGA----------SLTQEHEQAEGPHPIIKVPDTLKAMQQIASFYRN-KMSLPIIGITG 110
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TT+ MIA L+ VF++ GN N++VGV L+L + I VLEMGMS G+
Sbjct: 111 SVGKTTTREMIAHVLKG-KYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQ 169
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L + RP VV NVG SH+E +GS +++ R K +I V LN D+ ++
Sbjct: 170 ITILGEIIRPNAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDNDMIRK 229
Query: 260 ----LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
+T P FFG+ C R + +G V E +E V ++ G H
Sbjct: 230 HIGYVTHPYE----FFGFSEDCSYRAEGTEEIHGQTHFTFVHENMKEPV--ILNVLGDHN 283
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375
NA AA A+ + V + + L+ FS + + ++ G +++DAYNA+P S +A
Sbjct: 284 VSNALAAIALGLAYEVPMETIKRQLATFSG---QRQNILKIHGYTVIDDAYNASPDSMKA 340
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ +L D +G+++ +L DMLELG + H ++ + A I + + G
Sbjct: 341 GLKILSDYKDSGRKIAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITG 391
>gi|423523944|ref|ZP_17500417.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA4-10]
gi|401169787|gb|EJQ77028.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
cereus HuA4-10]
Length = 454
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 168/299 (56%), Gaps = 8/299 (2%)
Query: 113 NTLNSLVNMACYARNSRFSGV-LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171
+TL +L +A + RN GV ++G+TGS GK+T K +I L S V ++ GN N++
Sbjct: 87 DTLFALQQLAQFYRNEL--GVKVIGITGSNGKTTVKDIIGGILSST-YRVHKTKGNLNSQ 143
Query: 172 VGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231
+G+ L+++ + R + +LEMGMS KG+I L+++A+P++ ++ +G SHLE+LGS E++
Sbjct: 144 IGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLETLGSKEEI 203
Query: 232 ARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
++AK EI K + + N D+ L++ + FG + D L V
Sbjct: 204 SKAKLEIIDGLKEEGLLLYNGDETLLSRKNNVLVLECKSFGEKDTND--LFPTNVQLDEY 261
Query: 292 GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE 351
GV L + +++ +P G H +N AV + V ++ +L + MR +
Sbjct: 262 GVHFKLNDSK--IQYDVPLHGKHNILNTIVGIAVGQFYNVPTEKIQDALRQINITHMRFQ 319
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
L +++G I+NDA+NA+P S +AAI+ L+ + K+++++GDMLELG H +I
Sbjct: 320 FLTAKTGFTIINDAWNASPSSMKAAIETLEKLNAYEKKIIVIGDMLELGKEAETYHREI 378
>gi|410644640|ref|ZP_11355116.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
agarilytica NO2]
gi|410135814|dbj|GAC03515.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
agarilytica NO2]
Length = 471
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 184/380 (48%), Gaps = 17/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + P+ F A++G +FD H+FI G G V VI V D Q+
Sbjct: 33 VSTDTRQINPD--DLFIALSGPNFDGHKFIDTAAQG-GAVAVI---VSRKVDTELAQILV 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L L A + V +TGS GK+T K M+A L G V + GN+
Sbjct: 87 SDTKEALGRL----GQAIKREVAPKTVAITGSSGKTTVKEMVAAILSRRG-KVLATKGNF 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ + AV+E+G + GEI + +P++ ++N +HLE GSL
Sbjct: 142 NNDIGVPLTLLRLEADHEFAVVELGANHLGEIAYTTELVKPDVATIVNAAAAHLEGFGSL 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVAAQVA 287
VARAK EIF+ + + NAD A +R F + D A V
Sbjct: 202 LGVARAKSEIFKGLGKDGLAIFNADSQFYAFWHGKYEHLRNQAFSTKDEAD--YYAQDVV 259
Query: 288 NGGLG-VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G G ++ V +P PGLH NA +AA+A G +L V L + V
Sbjct: 260 LGLNGCADFLMVTPLGKVSISLPLPGLHNVSNALVSAALAIEVGANLQDVQAGLQYMAQV 319
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R ++ +K+++D YNAN S AAIDLL A G++V++LGDM ELG R
Sbjct: 320 SGRLQVKQLSGQVKVLDDTYNANVASVNAAIDLLGSFA--GRKVLVLGDMAELGERARFY 377
Query: 407 HEKILSYCCDACIDLIGLVG 426
H+++ Y + ID + +G
Sbjct: 378 HQQVGEYAKEKGIDDLYTLG 397
>gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Citreicella sp. SE45]
gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Citreicella sp. SE45]
Length = 477
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 198/426 (46%), Gaps = 44/426 (10%)
Query: 26 IWTINEIAESVNGKIL-KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+WT E A + G++ W G+ DTR +AP F D H+F++ L
Sbjct: 3 LWTAQEAAAATGGQVAGDWDATGV-SIDTRTIAPGD---LFVALKAARDGHDFVAQALE- 57
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
KG + + V D + V V+ + + + A R +V VTGSVGK+
Sbjct: 58 KGAAAALVSHVPEGVDPARLLV-----VDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKT 112
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
+TK M+ L + G V + ++NN GV L+L + VD AV+E+GM+ GEI L+
Sbjct: 113 STKEMLRCVLGAQG-KVHAAEKSYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLS 171
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD---DPLVANLT 261
RMARP + +V V +HL + SLE +AR KG IF+ + G V+N D P++ +
Sbjct: 172 RMARPHVAMVTIVAPAHLAAFESLEGIAREKGAIFEGLEPGGTAVINGDLPVSPILREMA 231
Query: 262 VPRGVRKVFFGWRRGCDVRLV------AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
R + FG G R+ AA VA G R V + + PG H
Sbjct: 232 QARAAHVIDFGEAAGNHHRVTEVTICDAATVAQG--------RAWRSNVLYKVAVPGRHF 283
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS-------ELLVSRSGIKIVNDAYNA 368
A+N AVA G+ A +L + P R + + ++ +++++DAYNA
Sbjct: 284 AVNGMGVLAVAHALGLDRALAVTALGQWQPGAGRGLREVVLLDPVETQLTLELIDDAYNA 343
Query: 369 NPISTRAAIDLLKDI--------ACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
NP S A++++L +G+R+ +GDM ELG E H + + ID
Sbjct: 344 NPASLGASLEVLAAAEPRDGLGRVTHGRRIAYVGDMKELGEGEVAMHRALAGHPSMGKID 403
Query: 421 LIGLVG 426
++ VG
Sbjct: 404 VVHCVG 409
>gi|385825222|ref|YP_005861564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase
[Lactobacillus johnsonii DPC 6026]
gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D- alanyl ligase
[Lactobacillus johnsonii DPC 6026]
Length = 455
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 197/409 (48%), Gaps = 35/409 (8%)
Query: 31 EIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFIS-------- 79
EIA+++N + G +I + D+R PN F + G D H+F+S
Sbjct: 7 EIAKALNSSV-NMGEDKVITSVVFDSRKATPN--SLFIPLDGAR-DGHDFVSNAMANGAE 62
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L+ KG G+ D ++VE + L +L N+A Y + + +VG+TG
Sbjct: 63 ATLWKKGHEGM-------PTDVPVIEVE-----DPLTALQNLAKYYL-GKVNPTVVGITG 109
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+A L S NV ++ N+NN +GV ++++ + + +I VLEMGM G+
Sbjct: 110 SNGKTTTKDMVAAVL-SKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDHPGQ 168
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
+ L+ + RP++ V+ +G++H+E G+ + +A AK EI K + N D+PL+
Sbjct: 169 LHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEE 228
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
K FG+R V + E +F IP G H NA
Sbjct: 229 RAAKIKQEKSTFGFREEDTVFATTFR----SYMHHATFEVNGSTQQFKIPMIGKHNVSNA 284
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA +V FG + Q+ +L+NF+P R + G I++D YN+NP + +A
Sbjct: 285 LAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDDVYNSNPTAVKAVTTS 344
Query: 380 LKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ G+R+ +LGDMLELG + H + + A I+ + L G
Sbjct: 345 FGQVMVEDGGRRIAVLGDMLELGDESADLHASLATSLDPAIINELYLYG 393
>gi|316933182|ref|YP_004108164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodopseudomonas palustris DX-1]
gi|315600896|gb|ADU43431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Rhodopseudomonas palustris DX-1]
Length = 479
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 133/414 (32%), Positives = 197/414 (47%), Gaps = 24/414 (5%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
S P+WT + +AE++ P + I D+R LAP +FAI G D H+F++
Sbjct: 2 SKEPLWTSDAMAEAMAATRSGTLPRDVFGISIDSRTLAPG--DAYFAIRGDVHDGHDFVA 59
Query: 80 PELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
L + V+ + + D + V+ + L L + AR SR S ++ V
Sbjct: 60 AALNAGAALAVVEKAQRDKFAADAPLLVVD-----DVLEGLRRLGIAAR-SRLSAKVIAV 113
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK++TK + L + G S ++NN GV L+L V AV E+GM+
Sbjct: 114 TGSVGKTSTKEGLRSVLGAQG-PTHASVASFNNHWGVPLTLARCPAGVRYAVFEIGMNHA 172
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP-- 255
GEI L +M RP + ++ V HLE +E +A AK EIF + G + +LN D P
Sbjct: 173 GEIEPLVKMVRPHVAIITTVEPVHLEFFSGVEGIADAKSEIFSGLEPGGIALLNRDTPMF 232
Query: 256 --LVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGL 313
L AN R V FG D RL+ + V + V + I PG
Sbjct: 233 DRLSANALRANVGRIVTFGTDPAADARLLDVALHADCSAVHASILGHD--VTYKIGMPGR 290
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANP 370
H+A+N+ A A A L G LA +++S P R L + +++++YNANP
Sbjct: 291 HMALNSLAVLAAAELVGADLALAALAMSQVQPAVGRGARKALPIGSGEATLIDESYNANP 350
Query: 371 ISTRAAIDLL--KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
S AA+ +L +I G+R+ +LGDMLELG T E H + + IDL+
Sbjct: 351 ASMAAALGVLGRAEIGAQGRRIAVLGDMLELGPTAGELHRGLEAAVRANGIDLV 404
>gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
beijerinckii NCIMB 8052]
gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
beijerinckii NCIMB 8052]
Length = 450
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 215/397 (54%), Gaps = 23/397 (5%)
Query: 31 EIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
EI ++V+G+I+ GI I TDTR + N F A+ G++F+ +++ + + KG
Sbjct: 7 EIIKAVDGEIIVKNNEGIFNKISTDTRKIQEN--NLFIALKGENFNGNDY-TIQAIEKGA 63
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+I + V + +++ G + +T +L ++A + R + +VG+TGS GK
Sbjct: 64 SIIIIDDVKFKIE----ELKNRGTIIKVKDTKEALGDLARFYR-KKIGVKVVGITGSTGK 118
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
++TK ++A A S VF++ GN+NN +G+ L + + + DIAVLEMGMS GEI +L
Sbjct: 119 TSTKDLVA-AFLSGKYKVFKTQGNFNNEIGLPLMIFELSKDYDIAVLEMGMSNFGEINKL 177
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI--FQESKLGDVCVLNADDPLVANLT 261
A +A P++ + N+G +H+E L + E++ + K I F E+K + ++N ++ ++ +
Sbjct: 178 ASIALPDVGAITNIGVAHIEYLKTRENILKEKMSITDFFENK--NSLIVNCENDMLKTIV 235
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
G+ ++ ++ + VV + + E +F + G H +NA
Sbjct: 236 ECDKFNLERVGYDSTYNLYSKNIKLTSENTSFDVVTD-DNENYRFTLNMVGEHNVLNALI 294
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
+A FG++ ++ L NF+ MR E ++++ I+ND+YNANP S +AA+++LK
Sbjct: 295 GIQIARNFGLTFEEMEKGLGNFNATSMRLE-VINKDKFTIINDSYNANPDSMKAALEVLK 353
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDAC 418
+ + +++ +LG M ELG E+H ++ + D
Sbjct: 354 NYSG-SRKIAVLGTMGELGDYAEEAHIQVGEFAKDKA 389
>gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus vaginalis ATCC 49540]
gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus vaginalis ATCC 49540]
Length = 460
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 203/406 (50%), Gaps = 21/406 (5%)
Query: 31 EIAESVNGK--ILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EIA+++ + I +W I + D+R L + F + G D H+++ + G
Sbjct: 7 EIAKAIGAENNIEQWKDVEITSVAFDSRQL--DSGALFIPLQGAQ-DGHQYVE-SAFANG 62
Query: 87 CVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
V + + V D+ + V+ + L SL ++ Y + + + ++V VTGS GK
Sbjct: 63 AVATLWASDHDVTTTEDQPILVVD-----DPLESLQQLSKYYLH-KINPIVVAVTGSNGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M A L S +NV +++ N+NN +GV ++L+ ++ + ++ V+EMGM G++ L
Sbjct: 117 TTTKDMTASIL-STQLNVTKTHANFNNEIGVPVTLLNMESSTEVVVVEMGMDRPGQLDFL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+++ P+ V+ +G++H+E G+ + +A AK EI K + N D+PL+
Sbjct: 176 SKLVSPDFAVITMIGEAHIEFFGTRDKIADAKMEIVHGLKEDGTFIFNGDEPLLQERAAN 235
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
RKV FG + D + + +V + E F IP G + NA AA
Sbjct: 236 VEQRKVTFGRQLTDDFYATSVNQHETSIDFKVNEWPDEE---FTIPMVGEYNVNNALAAI 292
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
AV ++ A + +L N + R+E + G +I++D YN+NP + + + ++++
Sbjct: 293 AVGKQLHITPAHIKKALKNVELTENRAEWVNGAQGERILSDVYNSNPTAAKQVLKTIEEL 352
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
GKR+ +LGDMLELG H + + I+ + LVG +
Sbjct: 353 PTTGKRIAVLGDMLELGDASARLHASLAANIDPKKIEEVYLVGSEM 398
>gi|393778730|ref|ZP_10366992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, partial
[Capnocytophaga sp. oral taxon 412 str. F0487]
gi|392611493|gb|EIW94230.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase, partial
[Capnocytophaga sp. oral taxon 412 str. F0487]
Length = 439
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 188/380 (49%), Gaps = 32/380 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + PN +FA+ G F+ + F L C VI + + DK + V+
Sbjct: 15 VSTDTRNIKPNS--IYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKTLL-VD- 70
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L +A Y R + +++G+TGS GK+TTK +I L S +N+ + GN
Sbjct: 71 ----DVLTTLQQLATYHRR-KLKTLVIGITGSNGKTTTKELIKSVL-SQQLNIVATQGNL 124
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I DIA++EMG + GEI L +A P+ + ++G +HLE GS
Sbjct: 125 NNNIGVPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSF 184
Query: 229 EDVARAKGEIFQESKLGDVCVL-NADDPLVANLTVPRGVRKVF-FGWRRGCDVRL----- 281
E V + KGE++ K ++ NAD+P+ L V+ FG G +V +
Sbjct: 185 EGVIKTKGELYDYLKTHHKTIIANADNPITEALL--ENYNNVYSFGVGEGVNVSVQCLST 242
Query: 282 --VAAQVANGGLGVQVVLEKEREMVKFVIPSPGL---HLA-----INACAAAAVATLFGV 331
V Q A+ L Q E ++ +P + HL N A+ A F +
Sbjct: 243 QPVKIQFADSSL--QTTTEGFPTNIEGFSDAPTVATSHLVGSYNFTNIAASVAFGRYFKL 300
Query: 332 SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391
S + + ++ P RS+LL S ++ DAYNANP S AAID L + +V+
Sbjct: 301 STKAIQKGIESYIPQNNRSQLLEWGSNTVLL-DAYNANPSSMTAAIDNLLSMNSFPNKVL 359
Query: 392 ILGDMLELGSTERESHEKIL 411
ILGDM ELG + H+ I+
Sbjct: 360 ILGDMFELGDYATQEHQSIV 379
>gi|227822655|ref|YP_002826627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
[Sinorhizobium fredii NGR234]
gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
[Sinorhizobium fredii NGR234]
Length = 477
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 202/391 (51%), Gaps = 29/391 (7%)
Query: 26 IWTINEIAESVNGKILKWGPPGII--CTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT +++ ++NG+ + P GII D+R +A K + FFAI G D H++ L
Sbjct: 4 LWTCSDLLAAMNGRPVGNLPEGIIGISIDSRTIA--KGEAFFAIRGDRVDGHDYAGIALA 61
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + V+ + L +++ + C AR+ R + ++ VTGS
Sbjct: 62 NGASLLVVSEGKLPALGRLIAPMIVVD-----DVLEAMIRLGCAARD-RSAAKVIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L LG V S ++NN GV L+L + + + E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPLG-RVHASIASFNNHWGVPLTLARMPETTEFGIFEIGMNHHGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L M RP + VV ++ +HL + SL+++A AK EIF+ G V+N D P L+
Sbjct: 175 RPLTAMVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVINRDSPQFELL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLV--AAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
V GV + FG + RL+ A + GL + + RE+ I +PG H
Sbjct: 235 ERAAVAAGVSHIHSFGANPKSEYRLIEFAGGAESSGLWAGIG-GRTREV---TIGAPGRH 290
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPI 371
+A NA A A A L G L +V SL+ P + +R L + + +++++YNANP
Sbjct: 291 IAENALAVVAAAQLAGADLDRVLASLATMQPEKGRGLRHRLKIGGGHLTLIDESYNANPA 350
Query: 372 STRAAIDLLK--DIACNGKRVVILGDMLELG 400
S RAAI LL+ + G+R+ ILGDMLE+G
Sbjct: 351 SMRAAISLLRAAEPPAGGRRIAILGDMLEMG 381
>gi|385813077|ref|YP_005849470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus helveticus H10]
gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus helveticus H10]
Length = 455
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 177/370 (47%), Gaps = 23/370 (6%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGFVQVEGNGNV----NTLNSL 118
F + G+ D H+F++ G I N W KG N V N L ++
Sbjct: 40 FVPLEGER-DGHDFVA---------GAISNGASATLWKKGHPNKPKNITVIEVDNPLTAM 89
Query: 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
++A Y + + +VG+TGS GK+TTK MIA L S NV ++ N+NN +GV +++
Sbjct: 90 QDLARYYL-RKVNPTVVGITGSNGKTTTKDMIAAVL-SKRFNVHKTQANFNNEIGVPMTI 147
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + +I VLEMGM G++ L+ + P++ V+ +G++H+E GS + +A AK EI
Sbjct: 148 LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEI 207
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+ + N D+PL+ K FG+R D V A +
Sbjct: 208 TDFLREDGEFIYNGDEPLLQERAKKLDQAKATFGFR---DEDTVHATGFKSYMHHATFTI 264
Query: 299 KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG 358
+ E KF IP G H NA AA +V FG S ++ SLSNF P R E G
Sbjct: 265 NDSEQ-KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANRMEWEKGDVG 323
Query: 359 IKIVNDAYNANPISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCD 416
I++D YN+NP + RA + + G+R+ +LGDMLELG E H +
Sbjct: 324 EAIMSDVYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKKSPELHAGLCDTLDP 383
Query: 417 ACIDLIGLVG 426
I+ + L G
Sbjct: 384 QIINEVYLYG 393
>gi|395243278|ref|ZP_10420265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus hominis CRBIP 24.179]
gi|394484508|emb|CCI81273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus hominis CRBIP 24.179]
Length = 455
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/401 (29%), Positives = 196/401 (48%), Gaps = 19/401 (4%)
Query: 31 EIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
EIA ++N + K G +I + D+R N F + GQ D HEF++ + G
Sbjct: 7 EIASALNSDLSK-GEDTVITSVVFDSR--KATDNSLFVPLAGQR-DGHEFVANAI-SHGA 61
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
+ + N + +E + + L +L ++A Y N + + +VG+TGS GK+TTK
Sbjct: 62 KATLWKKGHPNKPESIPVIEVD---DPLTALQDLAQYYLN-KVNPTVVGITGSNGKTTTK 117
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
MIA L S NV ++ N+NN +GV ++++ + + +I VLEMGM G++ L+ +
Sbjct: 118 DMIAAVL-SKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSSLV 176
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVR 267
+P++ V+ +G++H+E G+ + +A AK EI K + N D+PL+A
Sbjct: 177 KPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKADGKFIYNGDEPLLAERAKKIKQS 236
Query: 268 KVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVAT 327
K FG+ V + ++ E KF IP G H NA AA +V
Sbjct: 237 KSTFGFEEDDTVYATEWKSYMHHASFKINNSDE----KFTIPMIGKHNVSNAMAAISVGR 292
Query: 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN- 386
F S ++ +LS F+P R + G I++D YN+NP + +A + +
Sbjct: 293 HFHESDEEIAQALSKFTPTANRMQWKKGDVGEAIMDDVYNSNPTAAKAVLTSFGQVKIKE 352
Query: 387 -GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G+R+ +LGDMLELG + H + S ID + L G
Sbjct: 353 GGRRIAVLGDMLELGDAAPQLHASLASALDPTIIDEVYLYG 393
>gi|412341493|ref|YP_006970248.1| murein biosynthesis bifunctional protein [Bordetella bronchiseptica
253]
gi|408771327|emb|CCJ56127.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica 253]
Length = 945
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 182/384 (47%), Gaps = 16/384 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + TDTR + + + F A++G++FD H+++ C V+ + V V
Sbjct: 508 GAVSTDTRRI--GRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVAGVALPQLVLG 565
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN--VFQS 164
+TL +L M R+S F+ +V VTGS GK+TTK MI+ L + +
Sbjct: 566 ------DTLAALGRMGTAWRSS-FTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLAT 618
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
GN+NN +GV L+L+ + AV E+GM+ GEI LA MA P + +V N H E
Sbjct: 619 AGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEF 678
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVA 283
+ ++E VA G + V V D+P A G R+V FG + G DV A
Sbjct: 679 MHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQPGLDV--YA 736
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+V G Q L + +P PGLH NA AA A G L +L+ F
Sbjct: 737 ERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGF 796
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
V R + G +++D YNANP S RAAID+L + R ++LGDM E+G
Sbjct: 797 QAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPA--PRALVLGDMGEVGDNG 854
Query: 404 RESHEKILSYCCDACIDLIGLVGD 427
H ++ Y + ID + +G+
Sbjct: 855 PAMHREVGDYAREHGIDALITLGE 878
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 146/401 (36%), Gaps = 43/401 (10%)
Query: 24 SPIWTINEIAESVNGKILKW-----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
SP +N + + L W P + D+R + P F A G D +F+
Sbjct: 2 SPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGD--VFVACPGLASDGRQFM 59
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L +G ++ Q + TL + Y R S+ V V +T
Sbjct: 60 DQAL-ARGASAILYETEGAPVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSV-VAIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
G+ GK++ +A L +G S G + SL G D+ + ++
Sbjct: 118 GTNGKTSCTQWLAQVLTRMG-KPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMR 176
Query: 199 EI-------------LELARMARPEIRVV--LNVGDSHLESLGSLEDVARAKGEIFQESK 243
+E R+ I V N+ HL+ G+++ +AK +FQ
Sbjct: 177 AAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPD 236
Query: 244 LGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKE 300
L V+NADDP L ++P ++ + DV Q A+G + + + E
Sbjct: 237 L-QAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGE 295
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR---------SE 351
++V ++ G H N A + G L Q+ L+ SPV R
Sbjct: 296 AQIVTRLL---GQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQH 352
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNGKRVV 391
L G +V D Y P + A+ L+ +A G R+V
Sbjct: 353 LTAGAQGALVVVD-YAHTPDALARALTALRPVAQARGGRLV 392
>gi|383481799|ref|YP_005390714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rhipicephali str. 3-7-female6-CWPP]
gi|378934138|gb|AFC72641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rhipicephali str. 3-7-female6-CWPP]
Length = 449
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 189/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKYKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
+A Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KIALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSSKTSAELIVYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINNKVLDVTIPFIPWHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
glucosetrophus SIP3-4]
gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
glucosetrophus SIP3-4]
Length = 457
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 196/391 (50%), Gaps = 35/391 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R + P Q F A+ G+ FD H ++ L G + + G V
Sbjct: 25 VGTDSRNIVPG--QLFIALRGERFDGHAYVLQALQ-SGAAAALVAEAQPGMAAGVVVK-- 79
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN---VFQSY 165
NT +L +A RN RFS + +TGS GK+T K M+A L + + V +
Sbjct: 80 ----NTRLALGQLAAVWRN-RFSIPVAAITGSNGKTTVKEMVASILRAEAGDSNAVLATR 134
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +G+ L+L+ + + V EMGM+ GEI L++MARP + +V N +HL L
Sbjct: 135 GNLNNDIGLPLTLLRLRPSHKYTVAEMGMNHFGEIRYLSQMARPTVALVNNATSAHLGGL 194
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADD---PLVANLTVPRGVRKVFFGWRRGCDVRLV 282
GS+E +ARAKGEIF+ L + V+NADD PL L + + FG + DV
Sbjct: 195 GSVEGIARAKGEIFEGLALEGMAVINADDLYAPLWTELAGEHDI--LTFGLAKMADV--- 249
Query: 283 AAQVANGGLGVQ---VVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGIS 339
AN L V ++ + F + GLH NA AA+ VA G +
Sbjct: 250 ---TANYELRADTSYVYMKSPIGGIAFNLQVAGLHNVRNALAASTVAIAMGARPESIAKG 306
Query: 340 LSNFSPVQMRSELLVSRSGIK---IVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDM 396
L F V R L R+GI +++D YNANP S RAAID+L A GKR+++LGDM
Sbjct: 307 LEAFDGVDGR---LQHRAGIGQALVIDDTYNANPASMRAAIDVLA--ARPGKRLLVLGDM 361
Query: 397 LELGSTERESHEKILSYCCDACIDLIGLVGD 427
ELG T H +I Y +A I+ + +GD
Sbjct: 362 GELGETAAAMHTEIGQYAREAGINGLYTLGD 392
>gi|423713721|ref|ZP_17687981.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395422048|gb|EJF88269.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella vinsonii subsp. arupensis OK-94-513]
Length = 473
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 206/417 (49%), Gaps = 22/417 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ +W + +++G ++ P + D+R L K FF I G H D H+F + +
Sbjct: 2 TALWDKQALVSAIDGFVVGNIPESFSGVSIDSRTL--TKGDIFFCIKGHHLDGHDF-AAQ 58
Query: 82 LYGKGC-VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
Y +G V V+ ++ +K + + L +L +A AR R ++ +TGS
Sbjct: 59 AYARGAGVLVVAESRLSDMEK--ISAPLLVVPDVLQALEQLAQAARK-RSRAKIIAITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L ++G V + + NN GV L+L + D + E+GM+ K EI
Sbjct: 116 VGKTTTKEALKQVLATVG-KVHANLASLNNHWGVPLTLARMPMESDYGIFEIGMNHKDEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L ++ P + ++ ++ H+ +LE++A AK EIF+ + VLNAD + L
Sbjct: 175 RPLVKLVHPHVVLITHISAGHMGFFKNLEEIADAKAEIFEGLDEEGIAVLNADHDFFSYL 234
Query: 261 TVPR---GVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
GV+K+ FG D + ++ ++V + + ++K I +PG H+
Sbjct: 235 VQKAKQCGVKKILSFGETENADYQARDIRLLTDYSSMRVHISGQDRVIK--IGAPGRHIL 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSG-IKIVNDAYNANPIS 372
N+ AV GV L + +SL FS + +R L + G +++++YNANP S
Sbjct: 293 QNSLGVLAVCDAIGVDLEHIFLSLGRFSLQKGRGVRYRLSLPSGGEFHLIDESYNANPAS 352
Query: 373 TRAAIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
RAA+DLL + G+R+ ILGDMLELG+ + H ++ + DL+ L G+
Sbjct: 353 MRAALDLLATGPVGEGGRRIAILGDMLELGAYSEKLHRDLVKPVYRSGADLVFLFGE 409
>gi|421848811|ref|ZP_16281797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pasteurianus NBRC 101655]
gi|371460331|dbj|GAB27000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acetobacter pasteurianus NBRC 101655]
Length = 461
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 196/406 (48%), Gaps = 26/406 (6%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT E+ + G L + I DTR L P F A+ G + D H I+
Sbjct: 2 SLLWTREELETATGGTFLGNTSVSVTGISIDTRTLTPG--DLFIALKGDNSDGHAHIATA 59
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L KG V+ + D + V +T+ L +A AR +RF G +V VTGSV
Sbjct: 60 LE-KGAAAVLAHSAEGFTDPRILLV-----ADTMLGLQKLAQAAR-ARFKGKVVAVTGSV 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+ L L G+ + ++NN GV L+L + R + E+GM+ GEIL
Sbjct: 113 GKTTTKEMLRLCLAPSGLT-HAAEASYNNHWGVPLTLARLPREATFCISEIGMNHPGEIL 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA+M +P++ V+ +G +HL +GSL+ +A+ K I G + ++ DD
Sbjct: 172 PLAKMVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPKGGIAIV-PDDAHGTEFF 230
Query: 262 VPRGVRKVFFGWRRGCDVRLVA--AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ W G + + A A + G G + + + +P+PG HLA NA
Sbjct: 231 TAEAEKAQAVLWTCGVNPQSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPAPGTHLARNA 290
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL-VSRSGIKIVNDAYNANPISTRAAID 378
A A G +A+ +L++F P + R L+ + I +++++YNA+ S RAA+D
Sbjct: 291 VVALAACAALGADVAKAADALADFRPGKGRGALIQIVGGAITLLDESYNASAASIRAALD 350
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKI---------LSYCC 415
+L+ I +R+ +LGDM ELG H+ + L +CC
Sbjct: 351 VLRHIPAT-RRIAVLGDMRELGEFSISEHQALAAPAASAADLVFCC 395
>gi|417838711|ref|ZP_12484949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Lactobacillus johnsonii pf01]
gi|338762254|gb|EGP13523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Lactobacillus johnsonii pf01]
Length = 455
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 197/409 (48%), Gaps = 35/409 (8%)
Query: 31 EIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFIS-------- 79
EIA+++N + G +I + D+R PN F + G D H+F+S
Sbjct: 7 EIAKALNSSV-NMGEDKVITSVVFDSRKATPN--SLFIPLDGAR-DGHDFVSNAMANGAE 62
Query: 80 PELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG 139
L+ KG G+ D ++VE + L +L N+A Y + + +VG+TG
Sbjct: 63 ATLWKKGHEGM-------PTDVPVIEVE-----DPLTALQNLAKYYL-GKVNPTVVGITG 109
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
S GK+TTK M+A L S NV ++ N+NN +GV ++++ + + +I VLEMGM G+
Sbjct: 110 SNGKTTTKDMVAAVL-SKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQ 168
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
+ L+ + RP++ V+ +G++H+E G+ + +A AK EI K + N D+PL+
Sbjct: 169 LHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLEE 228
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
K FG+R V + E +F IP G H NA
Sbjct: 229 RAAKIKQEKSTFGFREEDTVFATTFR----SYMHHATFEVNGSTQQFKIPMIGKHNVSNA 284
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA +V FG + Q+ +L+NF+P R + G I++D YN+NP + +A
Sbjct: 285 LAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDDVYNSNPTAVKAVTTS 344
Query: 380 LKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ G+R+ +LGDMLELG + H + + A I+ + L G
Sbjct: 345 FGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYG 393
>gi|410471656|ref|YP_006894937.1| murein precusor biosynthesis bifunctional protein [Bordetella
parapertussis Bpp5]
gi|408441766|emb|CCJ48261.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella parapertussis Bpp5]
Length = 945
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 185/385 (48%), Gaps = 18/385 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ- 105
G + TDTR + + + F A++G++FD H+++ C V+ + V D Q
Sbjct: 508 GAVSTDTRRI--GRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA---DVALPQL 562
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN--VFQ 163
V G+ TL +L M R+S F+ +V VTGS GK+TTK MI+ L +
Sbjct: 563 VLGD----TLAALGRMGTAWRSS-FTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLA 617
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +GV L+L+ + AV E+GM+ GEI LA MA P + +V N H E
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQE 677
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLV 282
+ ++E VA G + V V D+P A G R+V FG + G DV
Sbjct: 678 FMHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQPGLDV--Y 735
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A +V G Q + + +P PGLH NA AA A G L +L+
Sbjct: 736 AERVVTQAHGTQCGVVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAG 795
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F V R + G +++D YNANP S RAAID+L + R ++LGDM E+G
Sbjct: 796 FQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPA--PRALVLGDMGEVGDN 853
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
H ++ Y + ID + +G+
Sbjct: 854 GPAMHREVGDYAREHGIDALITLGE 878
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 146/401 (36%), Gaps = 43/401 (10%)
Query: 24 SPIWTINEIAESVNGKILKW-----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
SP +N + + L W P + D+R + P F A G D +F+
Sbjct: 2 SPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGD--VFVACPGLASDGRQFM 59
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L +G ++ Q + TL + Y R S+ V V +T
Sbjct: 60 DQAL-ARGASAILYETEGAPVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSV-VAIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
G+ GK++ +A L +G S G + SL G D+ + ++
Sbjct: 118 GTNGKTSCTQWLAQVLTRMG-KPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMR 176
Query: 199 EI-------------LELARMARPEIRVV--LNVGDSHLESLGSLEDVARAKGEIFQESK 243
+E R+ I V N+ HL+ G+++ +AK +FQ
Sbjct: 177 AAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPD 236
Query: 244 LGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKE 300
L V+NADDP L ++P ++ + DV Q A+G + + + E
Sbjct: 237 L-QAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGE 295
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR---------SE 351
++V ++ G H N A + G L Q+ L+ SPV R
Sbjct: 296 AQIVTRLL---GQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQH 352
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNGKRVV 391
L G +V D Y P + A+ L+ +A G R+V
Sbjct: 353 LTAGAQGALVVVD-YAHTPDALARALTALRPVAQARGGRLV 392
>gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
Length = 481
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/436 (29%), Positives = 205/436 (47%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E++ G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEAMEGRPFGNLPAGVTGISIDSRTLKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + F D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFDENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS---GIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R V + +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHLEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|417925543|ref|ZP_12568962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna SY403409CC001050417]
gi|341591169|gb|EGS34377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna SY403409CC001050417]
Length = 454
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 183/364 (50%), Gaps = 18/364 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + K+ F A+ G +FD +I V+ N D ++V+
Sbjct: 29 ISTDTRTIQ--KDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRDYRNINDYPVIEVD- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NT ++++A S ++ +TGS GK+TTK +++ L+ V ++ N+
Sbjct: 86 ----NTKEFMMDLA-RGYISSLDCKVIAITGSNGKTTTKDIMSSLLKE-KYKVVKTQKNY 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G++ ++ ID ++AVLEMG GEI +L +A P+I ++ N+GDSHL +L +
Sbjct: 140 NNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTK 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV--RKVFFGWRRGCDVRLVAAQV 286
E++ARAK EI + K + +LN DDP++ + + + + FG + D R+ +
Sbjct: 200 ENIARAKFEILEGLKEDGIFILNNDDPILREVKQEYKLPEKNITFGIKPDSDYRMEMIKA 259
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + + V F I G H NA + VA L G+ + + L N
Sbjct: 260 DETGSTFSI-----NDHV-FNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELT 313
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR+EL++ I+ND+Y +NP S + ++ + +++ +LGDMLELG E
Sbjct: 314 GMRNELIL-LDKFHILNDSYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITL 372
Query: 407 HEKI 410
H+ I
Sbjct: 373 HKNI 376
>gi|395793184|ref|ZP_10472589.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella vinsonii subsp. arupensis Pm136co]
gi|395431498|gb|EJF97516.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella vinsonii subsp. arupensis Pm136co]
Length = 473
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 206/417 (49%), Gaps = 22/417 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ +W + +++G ++ P + D+R L K FF I G H D H+F + +
Sbjct: 2 TALWDKQALVSAIDGFVVGNIPESFSGVSIDSRTL--TKGDIFFCIKGHHLDGHDF-AAQ 58
Query: 82 LYGKGC-VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
Y +G V V+ ++ +K + + L +L +A AR R ++ +TGS
Sbjct: 59 AYARGAGVLVVAESRLSDMEK--ISAPLLVVPDVLQALEQLAQAARK-RSRAKIIAITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L ++G V + + NN GV L+L + D + E+GM+ K EI
Sbjct: 116 VGKTTTKEALKQVLATVG-KVHANLASLNNHWGVPLTLARMPMESDYGIFEIGMNHKDEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L ++ P + ++ ++ H+ +LE++A AK EIF+ + VLNAD + L
Sbjct: 175 RPLVKLVHPHVVLITHISAGHMGFFKNLEEIADAKAEIFEGLDEEGIAVLNADHDFFSYL 234
Query: 261 TVPR---GVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
GV+K+ FG D + ++ ++V + + ++K I +PG H+
Sbjct: 235 VQKAKQCGVKKILSFGETENADYQARDIRLLTDYSSMRVHISGQDRVIK--IGAPGRHIL 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSG-IKIVNDAYNANPIS 372
N+ AV GV L + +SL FS + +R L + G +++++YNANP S
Sbjct: 293 QNSLGVLAVCDAIGVDLEHIFLSLGRFSLQKGRGVRYRLSLPSGGEFHLIDESYNANPAS 352
Query: 373 TRAAIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
RAA+DLL + G+R+ ILGDMLELG+ + H ++ + DL+ L G+
Sbjct: 353 MRAALDLLATGPVGEGGRRIAILGDMLELGAYSEKLHRDLVKPVYRSDADLVFLFGE 409
>gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
DSM 7489]
gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
DSM 7489]
Length = 425
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 192/380 (50%), Gaps = 21/380 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR + K+ FFA+ G +F+ + + S L KG + ++ + F+ V+
Sbjct: 16 VCTDTRKIT--KDCIFFALKGDNFNGNTYASEAL-EKGAAYAVVDEKEYAINNKFILVD- 71
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L +L + Y R + ++G+TGS GK+TTK +I ++ V + GN
Sbjct: 72 ----DVLQALQQLGKYHR-KQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTV-ATVGNL 125
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I + +IA++EMG + EI L+ +A P+ + N G +HLE GS
Sbjct: 126 NNHIGVPLTLLTIQKDTEIAIVEMGANHLKEIAFLSSLAEPDYGYITNFGKAHLEGFGST 185
Query: 229 EDVARAKGEIFQESKLGDVCV-LNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E V + K E+++ V LNADDP+ + + V+K+ F ++ ++
Sbjct: 186 EGVIQGKSELYKYLTTNQKHVFLNADDPIQES-KLGTYVKKIGFSSNNSNYFKI---ELL 241
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
+ V + ++ K V G + N CAA + F ++L + ++ ++P
Sbjct: 242 SADPFVTIKVKDITITTKLV----GAYNFTNCCAAIIMGKYFNIALPLIKEAIEGYTPAN 297
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
RS++L ++G KI+ DAYNANP S AA+D I ++V LGDM ELG+T H
Sbjct: 298 NRSQIL-EQNGYKIILDAYNANPTSMAAALDNFNGIKA-AHKIVFLGDMFELGTTAETEH 355
Query: 408 EKILSYCCDACIDLIGLVGD 427
+ I C LVG+
Sbjct: 356 QHIADKACKMNFTTTFLVGE 375
>gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. 'Sheila Smith']
gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rickettsia rickettsii str. Iowa]
gi|378721587|ref|YP_005286474.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Colombia]
gi|378722933|ref|YP_005287819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Arizona]
gi|378724287|ref|YP_005289171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Hauke]
gi|379016168|ref|YP_005292403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Brazil]
gi|379018073|ref|YP_005294308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Hino]
gi|379019383|ref|YP_005295617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Hlp#2]
gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia
rickettsii]
gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. 'Sheila Smith']
gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rickettsia rickettsii str. Iowa]
gi|376324692|gb|AFB21932.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Brazil]
gi|376326611|gb|AFB23850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Colombia]
gi|376327957|gb|AFB25195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Arizona]
gi|376330639|gb|AFB27875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Hino]
gi|376331963|gb|AFB29197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Hlp#2]
gi|376333302|gb|AFB30535.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia rickettsii str. Hauke]
Length = 449
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 189/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ +GEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHQGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSAKTSAELMLYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|406671544|ref|ZP_11078783.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Facklamia hominis CCUG 36813]
gi|405580794|gb|EKB54853.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Facklamia hominis CCUG 36813]
Length = 468
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 174/331 (52%), Gaps = 29/331 (8%)
Query: 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172
+TL ++ +A Y R +++ +TGS GK+T+K M A++L S V+++ GN+NN +
Sbjct: 90 DTLKAMQELASYYRQ-LVDPIVIAITGSNGKTTSKDMTAMSLTS-KYQVYKTQGNYNNEI 147
Query: 173 GVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVA 232
G+ +++ + + + VLEMGM+ GEI L+ +A+ ++ ++ +G+SH+E LGS + +A
Sbjct: 148 GMPYTILQMPSSTQVLVLEMGMNHFGEIHRLSCIAQIDVAIITLIGESHIEYLGSRQGIA 207
Query: 233 RAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290
+AK EI K G + + ++PL+ANL R ++ FG D
Sbjct: 208 QAKMEILDGLKDGGIFLYPQNEPLIANLLEKQTRKLKSYTFGMDSQADFYAFD------- 260
Query: 291 LGVQVVLEKEREMVKF----------VIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
+E++ + F IP G + NA A AV+ L V Q L
Sbjct: 261 ------IEEDYDRTYFKTNIDGNVLCTIPVMGSYNVTNALIALAVSKLLDVPTEQAIFQL 314
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI--ACNGKRVVILGDMLE 398
S F R + L ++G KI+NDAYNA+P S RA + L +I +G+++V+LGD+LE
Sbjct: 315 SQFKLTANRLQWLKGKTGAKILNDAYNASPTSMRAVLASLSNINREESGRKIVVLGDILE 374
Query: 399 LGSTERESHEKILSYCCDACIDLIGLVGDRV 429
LG R+ H ++ + ID + L G +
Sbjct: 375 LGDKSRDYHRQLATGLDPESIDKVYLFGHEM 405
>gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna BVS033A4]
gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna BVS033A4]
Length = 454
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 193/388 (49%), Gaps = 20/388 (5%)
Query: 26 IWTINEIAESV-NGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ TI E+ ++ N K GI TDTR + K+ F A+ G +FD +I
Sbjct: 6 LKTITELTNTIINEKYHDIMVKGI-STDTRTIQ--KDNMFIALRGDNFDGQNYIEMAFEK 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
V+ N D ++V+ NT ++++A S ++ +TGS GK+
Sbjct: 63 GASCCVVNRDYRNINDYPVIEVD-----NTKEFMMDLA-RGYISSLDCKVIAITGSNGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK +++ L+ V ++ N+NN +G++ ++ ID ++AVLEMG GEI +L
Sbjct: 117 TTKDIMSSLLKE-KYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLT 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A P+I ++ N+GDSHL +L + E++ARAK EI + K + +LN DDP++ +
Sbjct: 176 NIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPILREVKQEY 235
Query: 265 GV--RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
+ + + FG + D R+ + G + + V F I G H NA +
Sbjct: 236 KLPEKNITFGIKPDSDYRMEMIKADETGSTFSI-----NDHV-FNIELLGHHQMYNATMS 289
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
VA L G+ + + L N MR+EL++ I+ND+Y +NP S + ++
Sbjct: 290 IIVAELMGLDYSDIAKGLKNIELTGMRNELIL-LDKFHILNDSYKSNPQSLTSCLETAYG 348
Query: 383 IACNGKRVVILGDMLELGSTERESHEKI 410
+ +++ +LGDMLELG E H+ I
Sbjct: 349 LHGYSRKIAVLGDMLELGDNEITLHKNI 376
>gi|427825300|ref|ZP_18992362.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica Bbr77]
gi|410590565|emb|CCN05656.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica Bbr77]
Length = 945
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 185/385 (48%), Gaps = 18/385 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ- 105
G + TDTR + + + F A++G++FD H+++ C V+ + V D Q
Sbjct: 508 GAVSTDTRRI--GRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA---DVALPQL 562
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN--VFQ 163
V G+ TL +L M R+S F+ +V VTGS GK+TTK MI+ L +
Sbjct: 563 VLGD----TLAALGRMGTAWRSS-FTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLA 617
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +GV L+L+ + AV E+GM+ GEI LA MA P + +V N H E
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQE 677
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLV 282
+ ++E VA G + V V D+P A G R+V FG + G DV
Sbjct: 678 FMHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQPGLDV--Y 735
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A +V G Q + + +P PGLH NA AA A G L +L+
Sbjct: 736 AERVVTQAHGTQCGVVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAG 795
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F V R + G +++D YNANP S RAAID+L + R ++LGDM E+G
Sbjct: 796 FQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPA--PRALVLGDMGEVGDN 853
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
H ++ Y + ID + +G+
Sbjct: 854 GPAMHREVGDYAREHGIDALITLGE 878
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 146/401 (36%), Gaps = 43/401 (10%)
Query: 24 SPIWTINEIAESVNGKILKW-----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
SP +N + + L W P + D+R + P F A G D +F+
Sbjct: 2 SPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGD--VFVACPGLASDGRQFM 59
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L +G ++ Q + TL + Y R S+ V V +T
Sbjct: 60 DQAL-ARGASAILYETEGAPVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSV-VAIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
G+ GK++ +A L +G S G + SL G D+ + ++
Sbjct: 118 GTNGKTSCTQWLAQVLTRMG-KPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMR 176
Query: 199 EI-------------LELARMARPEIRVV--LNVGDSHLESLGSLEDVARAKGEIFQESK 243
+E R+ I V N+ HL+ G+++ +AK +FQ
Sbjct: 177 AAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPD 236
Query: 244 LGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKE 300
L V+NADDP L ++P ++ + DV Q A+G + + + E
Sbjct: 237 L-QAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGE 295
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR---------SE 351
++V ++ G H N A + G L Q+ L+ SPV R
Sbjct: 296 AQIVTRLL---GQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQH 352
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNGKRVV 391
L G +V D Y P + A+ L+ +A G R+V
Sbjct: 353 LTAGAQGALVVVD-YAHTPDALARALTALRPVAHARGGRLV 392
>gi|402312251|ref|ZP_10831180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium ICM7]
gi|400370310|gb|EJP23298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lachnospiraceae bacterium ICM7]
Length = 459
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 197/386 (51%), Gaps = 15/386 (3%)
Query: 28 TINEIAESVNGKILKWGPPGI---ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
TI E+A + G+I+ + I D+R +K+ F + G+ DAH+F+ +Y
Sbjct: 5 TIKELAFATGGEIISGNENAVFSNIVIDSR--QADKDSLFVPLVGEKNDAHKFLGS-VYD 61
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
GC I ++ F V N +T +L + Y R S+ + LVGVTGSVGK+
Sbjct: 62 MGCRVAISSRKDIFLKDDFNIVLVN---DTTEALQKLGKYIR-SKLTLPLVGVTGSVGKT 117
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TT+ M+ALAL L VF++ N+N++VGV ++L I+ +I V+E+GMS GE+ +A
Sbjct: 118 TTREMVALALSDL--KVFKTPNNFNSQVGVPITLSRINDE-EIGVIELGMSQFGEMERIA 174
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
++ + +V N+G +H+E+L + E++ K I K G V LNAD+ L+ + +
Sbjct: 175 KIVNCDCALVTNIGTAHIENLHTRENIRAEKFHIMDGMKEGSVVFLNADNDLLFDPPKEK 234
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
G+ +F + A + + + V+ + G H NA A A
Sbjct: 235 GIVYKYFSAKGNTSCDYYATDIVFNNAMPEFTAHIGGKKVRVHLNVFGEHQISNALVAIA 294
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
VA + +S+ L F R E L+ I++D YNA+P S +A+I +LKD
Sbjct: 295 VADHYNLSVESAAKHLEEFRGFSHRQE-LIKLKDFTIIDDTYNASPDSMKASISILKDFD 353
Query: 385 CNGKRVVILGDMLELGSTERESHEKI 410
+++ IL DM ELG+ E+ H++I
Sbjct: 354 AE-RKIAILADMKELGTDEKILHKEI 378
>gi|379712656|ref|YP_005300995.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia philipii str. 364D]
gi|376329301|gb|AFB26538.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia philipii str. 364D]
Length = 449
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 189/377 (50%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
MA Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KMALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ +GEI EL ++ +P I ++ N+ ++HLE SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHQGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSAKTSAELMLYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|335356476|ref|ZP_08548346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus animalis KCTC 3501]
Length = 458
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 161/302 (53%), Gaps = 22/302 (7%)
Query: 116 NSLVNMACYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVG 173
++LV + R + + +V VTGS GK+TTK MIA A+ S NV +++ N+NN +G
Sbjct: 85 DTLVALQALGRYYLQKINPKVVAVTGSNGKTTTKDMIA-AILSTQFNVQKTFANFNNEIG 143
Query: 174 VALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVAR 233
V ++++ ++ +I V+EMGM G+I EL+R+A+P++ V+ +G++H+E G+ +A
Sbjct: 144 VPMTILSMEPNTEILVVEMGMDRFGQIDELSRLAQPDVAVITMIGEAHIEFFGTRAKIAD 203
Query: 234 AKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV 293
AK EI K + + N D+PL+ FG D++ GV
Sbjct: 204 AKMEIVNGLKEDGLLIYNGDEPLLVERAAKIEQATFTFGNEPKDDLQ-----------GV 252
Query: 294 QVVLEKEREMVK--------FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
VV + + + F IP G + NA AA +V F + +AQ+ +L NF
Sbjct: 253 NVVSDATKSSFRVTLWPDENFTIPMIGAYNVKNALAALSVGKEFMIDVAQMAKALENFDL 312
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
+ R+E +G +++D YN+NP + + + ++ GKR+ +LGDMLELG ER+
Sbjct: 313 TKNRTEWRTGTNGFMVLSDVYNSNPTAAKEVLQAFAEVKVAGKRIAVLGDMLELGENERQ 372
Query: 406 SH 407
H
Sbjct: 373 MH 374
>gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Lactobacillus buchneri NRRL B-30929]
gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Lactobacillus buchneri NRRL B-30929]
Length = 462
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/407 (27%), Positives = 200/407 (49%), Gaps = 19/407 (4%)
Query: 28 TINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
TI E+A+++N + + +C D+R + Q F + +H D H++I
Sbjct: 4 TIGEVAQAINANTENFDKAMLDESLTGVCFDSRKI--QAGQLFVPLVAEH-DGHDYIDNA 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ G + ++ D+ + + + L + ++ Y + + + ++ VTGS
Sbjct: 61 IAGGASATLWA---SDHADRLPLTIPALVVDDLLTAFQQLSKYYLD-KINPRVIAVTGSN 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MIA L S NV ++ N+NN +G+ +++ ++ + V EMGM G++
Sbjct: 117 GKTTTKDMIAAILSST-FNVTKTQDNFNNEIGLPYTILQMESNTEFLVAEMGMDRPGQLD 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN-- 259
L+++ARP++ V+ +G++H+E G+ + +A AK EI K V + D+PL+
Sbjct: 176 FLSKLARPDVAVITMIGEAHIEFFGTRDKIADAKMEITHGLKADGFFVYDGDEPLLTERA 235
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
V V K FG + DV + ++ V L E + F IP G + NA
Sbjct: 236 QQVDESVIKATFGRKDSNDVFAIDSKDGQYQTQFHVNLWPE---IDFTIPMIGDYNVNNA 292
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA +V +F + + L+ F + R++ L G +I++D YN+NP + + +
Sbjct: 293 LAAISVGRIFRIHPQMMADKLAKFDLTKNRTQWLSGSKGERILSDVYNSNPTAAKEVLTA 352
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
K+ G+R+ +LGDMLELG+ + H + A I ++ L+G
Sbjct: 353 FKNTTTKGRRIAVLGDMLELGTQSKAMHASLADALDPASIPVVYLIG 399
>gi|283783552|ref|YP_003374306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gardnerella vaginalis 409-05]
gi|283441475|gb|ADB13941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gardnerella vaginalis 409-05]
Length = 536
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 131/439 (29%), Positives = 215/439 (48%), Gaps = 45/439 (10%)
Query: 28 TINEIAESVNGKILKWGP------PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+I+EIA++V+G+I ++ + +D+R + F AI G+H D H+++
Sbjct: 31 SISEIAKAVHGEIHEFNSCDTDLVANSVFSDSRQI--RNGSVFVAIVGEHVDGHDYVKNA 88
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVT 138
V ++ + V Q+ N ++ L L R N F+ ++G+T
Sbjct: 89 EKSGAVVAIVEHVV---EGTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPFT--IIGIT 143
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK M+ L +LG V G++NN +G+ L+ + + + EMG + G
Sbjct: 144 GSVGKTTTKDMLKALLSTLGETV-APVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHVG 202
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L +A P++ +VL VG +HL GS+E +A+AK EI + + VLN+DD V+
Sbjct: 203 EIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDDKRVS 262
Query: 259 NLT----------VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
++ R V+ D +L A+ + G V ER ++
Sbjct: 263 AMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLDSFGKAVFTTTERSNSSNLM 322
Query: 309 PSPGLHLAI-------NACAAAAVATLFGVSL---AQVGISLSNFSPVQMR-SELLVSRS 357
+HLAI NA AAA VA G++L A V +S+ SP +M+ S + +
Sbjct: 323 NHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVSKNDE 382
Query: 358 GIKIVNDAYNANPISTRAAIDLL---KDIACNGK----RVVILGDMLELGSTERESHEKI 410
+++D++NANP S +A ID L ++ +C+ R+ +LG MLELGS E E H I
Sbjct: 383 KFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDELHTNI 442
Query: 411 LSYCCDACIDLIGLVGDRV 429
Y ++ +D + VG +
Sbjct: 443 GEYVANSSVDAVVAVGSKT 461
>gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[delta proteobacterium NaphS2]
gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[delta proteobacterium NaphS2]
Length = 476
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 209/415 (50%), Gaps = 23/415 (5%)
Query: 24 SPIW---TINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEF 77
+P W + EI ++V+G +L P +D+R + P F+A+ G+ FD H+F
Sbjct: 2 APRWGKISSKEIVKAVHGNLLHGNPRACFAAFNSDSRRVHPG--DLFWALKGERFDGHDF 59
Query: 78 ISPELYGKGCVGVIGNQ-----VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG 132
+ + +G GV+ + V N + + V+ NTL +L ++A + R + +
Sbjct: 60 VHQAVR-EGASGVVVQREYTISVENRPEIAVIAVD-----NTLRALGDLAAWWRR-QHTA 112
Query: 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEM 192
L +TGS GK+T K M A LE + ++ GN NN +G+ ++L+ +D + AV+EM
Sbjct: 113 KLAAITGSSGKTTAKEMTAAILE-MENKTLKNPGNHNNLIGLPVTLLKLDESHKRAVVEM 171
Query: 193 GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNA 252
GM+ KGEI L +A P+ +LNVG +HLE LG ++ VA AK E+ + +LN
Sbjct: 172 GMNHKGEIARLTEIAGPDTAAILNVGMAHLERLGDMDGVAEAKTELIAHASPDTKIILNG 231
Query: 253 DDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPG 312
DD ++ + V FG ++G + V + G G++ L + +P G
Sbjct: 232 DDAVLMKHATKFDRKFVTFGMKKGNHIHAVNIET-KGLKGIRFDLRWSDDTWPIQLPVSG 290
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPIS 372
+H NA AAAA+A + + L NF V+ R + + I +++D YNANP +
Sbjct: 291 VHNVKNALAAAAIALSLKEPVENIARGLRNFKGVKGRFQCIPLEGDIILIDDTYNANPSA 350
Query: 373 TRAA-IDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
A + LK + +G+ +V LGDMLELG +H + S ++ + +G
Sbjct: 351 LETALLSALKMVDRDGRLIVGLGDMLELGEAAVSAHREAGSRIAESGASRLFFMG 405
>gi|298252632|ref|ZP_06976426.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
5-1]
gi|297532996|gb|EFH71880.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
5-1]
Length = 536
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 131/439 (29%), Positives = 215/439 (48%), Gaps = 45/439 (10%)
Query: 28 TINEIAESVNGKILKWGP------PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+I+EIA++V+G+I ++ + +D+R + F AI G+H D H+++
Sbjct: 31 SISEIAKAVHGEIHEFNSCDTDLVANSVFSDSRQI--RNGSVFVAIVGEHVDGHDYVKNA 88
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVT 138
V ++ + V Q+ N ++ L L R N F+ ++G+T
Sbjct: 89 EKSGAVVAIVEHVV---EGTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPFT--IIGIT 143
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK M+ L +LG V G++NN +G+ L+ + + + EMG + G
Sbjct: 144 GSVGKTTTKDMLKALLSTLGETV-APVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHVG 202
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L +A P++ +VL VG +HL GS+E +A+AK EI + + VLN+DD V+
Sbjct: 203 EIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDDKRVS 262
Query: 259 NLT----------VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVI 308
++ R V+ D +L A+ + G V ER ++
Sbjct: 263 AMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLDSFGKAVFTTTERSNSSDLM 322
Query: 309 PSPGLHLAI-------NACAAAAVATLFGVSL---AQVGISLSNFSPVQMR-SELLVSRS 357
+HLAI NA AAA VA G++L A V +S+ SP +M+ S + +
Sbjct: 323 NHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVSKNDE 382
Query: 358 GIKIVNDAYNANPISTRAAIDLL---KDIACNGK----RVVILGDMLELGSTERESHEKI 410
+++D++NANP S +A ID L ++ +C+ R+ +LG MLELGS E E H I
Sbjct: 383 KFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDELHTNI 442
Query: 411 LSYCCDACIDLIGLVGDRV 429
Y ++ +D + VG +
Sbjct: 443 GEYVANSSVDAVVAVGSKT 461
>gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase [Anaerococcus
prevotii DSM 20548]
gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
prevotii DSM 20548]
Length = 460
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 200/402 (49%), Gaps = 25/402 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ EIA+ + G+I + + TD+R + + + + G+ FD FI E
Sbjct: 5 SLGEIAKMIGGEISDEKYSNLLIKGVSTDSRTI--QEGNLYIPLIGEVFDGRLFI-KECE 61
Query: 84 GKGCVGVIGNQVC---NNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
KG + + C NN +++VE +TL SL ++A R+ + ++G+TGS
Sbjct: 62 DKGASAFLADTDCKIKNNISIPYIRVE-----DTLKSLQDLARAYRSELKNTKVIGITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK ++ L+ V ++ GN NN +GV +++ +D +IA++EMG G+I
Sbjct: 117 NGKTTTKDLLYEVLKE-KYKVQKTIGNLNNEIGVPKTILSLDEDTNIAIVEMGTDSFGDI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
++RP+I ++ N+GDSHLE L + E + +AK EI + + N DDP +
Sbjct: 176 SLTTNISRPDIAIITNIGDSHLEKLKTKEGILKAKMEIVEGLSQDGYFIYNGDDPTMKKE 235
Query: 261 TVPRGVRK--VFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
V++ + FG D +V + N G +V + E + IP G H N
Sbjct: 236 ISSYEVKQKMISFGEEDDNDF-VVKSSDDNRG---KVSFTHDGET--YTIPLLGSHNIYN 289
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
V++L G+S Q+ LS +P RS ++ G +++D Y +NP S R+ +
Sbjct: 290 GGVTVLVSSLLGLSTDQIKKGLSEVTPANNRSS-IIEFEGFDVLDDCYKSNPQSLRSGLK 348
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
K + ++++LGDMLELG +E + H ++ S ID
Sbjct: 349 TTKLLGGYDSKILVLGDMLELGDSEDDLHYQVGSEIDPKDID 390
>gi|427818856|ref|ZP_18985919.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica D445]
gi|410569856|emb|CCN17977.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella bronchiseptica D445]
Length = 945
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 185/385 (48%), Gaps = 18/385 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ- 105
G + TDTR + + + F A++G++FD H+++ C V+ + V D Q
Sbjct: 508 GAVSTDTRRI--GRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA---DVALPQL 562
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN--VFQ 163
V G+ TL +L M R+S F+ +V VTGS GK+TTK MI+ L +
Sbjct: 563 VLGD----TLAALGRMGTAWRSS-FTLPVVAVTGSNGKTTTKEMISAILAHWQGDDGRLA 617
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +GV L+L+ + AV E+GM+ GEI LA MA P + +V N H E
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQE 677
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLV 282
+ ++E VA G + V V D+P A G R+V FG + G DV
Sbjct: 678 FMHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQPGLDV--Y 735
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A +V G Q + + +P PGLH NA AA A G L +L+
Sbjct: 736 AERVVTQAHGTQCGVVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAG 795
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F V R + G +++D YNANP S RAAID+L + R ++LGDM E+G
Sbjct: 796 FQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPA--PRALVLGDMGEVGDN 853
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
H ++ Y + ID + +G+
Sbjct: 854 GPAMHREVGDYAREHGIDALITLGE 878
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 146/401 (36%), Gaps = 43/401 (10%)
Query: 24 SPIWTINEIAESVNGKILKW-----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
SP +N + + L W P + D+R + P F A G D +F+
Sbjct: 2 SPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGD--VFVACPGLASDGRQFM 59
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L +G ++ Q + TL + Y R S+ V V +T
Sbjct: 60 DQAL-ARGASAILYETEGAPVALAGAQALPVAQLRTLLGALADEWYGRPSQDLSV-VAIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
G+ GK++ +A L +G S G + SL G D+ + ++
Sbjct: 118 GTNGKTSCTQWLAQVLTRMG-KPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMR 176
Query: 199 EI-------------LELARMARPEIRVV--LNVGDSHLESLGSLEDVARAKGEIFQESK 243
+E R+ I V N+ HL+ G+++ +AK +FQ
Sbjct: 177 AAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPD 236
Query: 244 LGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKE 300
L V+NADDP L ++P ++ + DV Q A+G + + + E
Sbjct: 237 L-QAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGE 295
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR---------SE 351
++V ++ G H N A + G L Q+ L+ SPV R
Sbjct: 296 AQIVTRLL---GQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQH 352
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNGKRVV 391
L G +V D Y P + A+ L+ +A G R+V
Sbjct: 353 LTAGAQGALVVVD-YAHTPDALARALTALRPVAHARGGRLV 392
>gi|425456928|ref|ZP_18836634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9807]
gi|389801846|emb|CCI19037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9807]
Length = 454
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 194/372 (52%), Gaps = 39/372 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
I TD+R + Q F A+ G +F+ H+FI + ++ V N+ V
Sbjct: 33 INTDSRSI--ESGQAFLALKGDNFNGHDFIDMAIEKGAATLIVDQPVSGNYSSNIPVFLV 90
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
Q NTL + +A + RN +F+ ++ +TGSVGK+TTK +IA L + G V ++
Sbjct: 91 Q-------NTLETYQQLAHWWRN-QFTIPVIAITGSVGKTTTKELIASVLATQG-KVHKT 141
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +GV +L+ +D D AV+EMGM G+GEI LA++A+P I V+ NVG +H+
Sbjct: 142 LANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIGR 201
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR--GVRKVFFGWRRGCDVRLV 282
LGS +A AK E+ ES + VLN D PL+ T R + +G+ G D+
Sbjct: 202 LGSESAIAEAKCELLAESPSSSIAVLNYDHPLLTE-TAKRVWQGETITYGF-SGGDI--- 256
Query: 283 AAQVANGGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGV--SLAQVGIS 339
+G + L R + F +P G H A+N AA AVA + G+ + Q GI
Sbjct: 257 --------VGELLDLTTLRVNGLDFNLPLSGRHHALNFMAALAVAKILGIDWTSLQQGIK 308
Query: 340 LSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLE 398
++ S R +L I ++++ YNA S AA+DLLK A G+R + +LG M E
Sbjct: 309 VNLPSGRAKRYQL---APDILLLDETYNAGLESMLAALDLLK--ATPGQRHIAVLGTMKE 363
Query: 399 LGSTERESHEKI 410
LGS + H ++
Sbjct: 364 LGSFSEQLHRQV 375
>gi|373465274|ref|ZP_09556748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus kisonensis F0435]
gi|371760938|gb|EHO49596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus kisonensis F0435]
Length = 460
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 206/406 (50%), Gaps = 19/406 (4%)
Query: 28 TINEIAESVNGKI-------LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
TI EIA ++N K+ LK G+ C D+R + P Q F ++G H D H++I
Sbjct: 4 TIGEIASAINAKVDNVPEDSLKQEVDGV-CFDSRKMKPG--QLFIPLSGDH-DGHDYIES 59
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G + + + + + + + L S ++ Y S+ + ++ +TGS
Sbjct: 60 AI-SNGAAATLWS--ADRVSRLPIAIPALVVADPLASFQELSRYYL-SKINPQVIAITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK MIA L S +V +++ N+NN +GV +++ ++ + V+EMGM G++
Sbjct: 116 NGKTTTKDMIASILSS-TFHVTKTHDNFNNEIGVPYTILQMESNTEFLVVEMGMDRPGQL 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L+++ +P++ ++ +G++H+E G+ + +A AK EI K + + + D+PL+A
Sbjct: 175 DFLSKLVQPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGMLIYDGDEPLLAER 234
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
K FG D+ + +V L + V+ +P G + NA
Sbjct: 235 AKHIETIKRTFGRHESNDIFPTETTDSKYQTTFKVNLWPD---VELTLPMIGDYNVNNAL 291
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA +V +F + + SL+ + R++ LV + G KI++D YN+NP + + +
Sbjct: 292 AAISVGQVFQIHPTLIEKSLAKLDLTKNRTQWLVGKKGEKILSDVYNSNPTAAKEVLTAF 351
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
++ G+R+V+LGDMLELG+ + H + + + I ++ L+G
Sbjct: 352 QETPTKGRRIVVLGDMLELGAQSKAMHAGLAANIDPSQIAMVYLIG 397
>gi|410642377|ref|ZP_11352889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
chathamensis S18K6]
gi|410138049|dbj|GAC11076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
chathamensis S18K6]
Length = 471
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 184/380 (48%), Gaps = 17/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR + N + F A++G +FD H+FI G G V VI V D Q+
Sbjct: 33 VSTDTRQI--NLDDLFIALSGPNFDGHKFIDTAAQG-GAVAVI---VSRKVDTELAQILV 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L L A + V +TGS GK+T K M+A L G V + GN+
Sbjct: 87 SDTKEALGRL----GQAIKREVAPKTVAITGSSGKTTVKEMVAAILSRRG-KVLATKGNF 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ + AV+E+G + GEI + +P++ ++N +HLE GSL
Sbjct: 142 NNDIGVPLTLLRLEADHEFAVVELGANHLGEIAYTTELVKPDVATIVNAAAAHLEGFGSL 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVAAQVA 287
VARAK EIF+ + + NAD A +R F + D A V
Sbjct: 202 LGVARAKSEIFKGLGKDGLAIFNADSQFYAFWHGKYEHLRNQAFSTKDEAD--YYAQDVV 259
Query: 288 NGGLG-VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G G ++ V +P PGLH NA +AA+A G +L V L + V
Sbjct: 260 LGLNGCADFLMVTPLGKVSISLPLPGLHNVSNALVSAALAIEVGANLQDVQAGLQYMAQV 319
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R ++ +K+++D YNAN S AAIDLL A G++V++LGDM ELG R
Sbjct: 320 SGRLQVKQLSGQVKVLDDTYNANVASVNAAIDLLGSFA--GRKVLVLGDMAELGERARFY 377
Query: 407 HEKILSYCCDACIDLIGLVG 426
H+++ Y + ID + +G
Sbjct: 378 HQQVGEYAKEKGIDDLYTLG 397
>gi|262047225|ref|ZP_06020183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
MV-3A-US]
gi|293380350|ref|ZP_06626421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus crispatus 214-1]
gi|312978401|ref|ZP_07790143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Lactobacillus crispatus CTV-05]
gi|260572470|gb|EEX29032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
MV-3A-US]
gi|290923033|gb|EFD99964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus crispatus 214-1]
gi|310894744|gb|EFQ43816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Lactobacillus crispatus CTV-05]
Length = 455
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 177/368 (48%), Gaps = 19/368 (5%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV-QVEGNGNVNTLNSLVNMA 122
F + G+ D HEFI+ + G + W KG + E + + L M
Sbjct: 40 FVPLEGER-DGHEFIASAI-NNGASATL-------WKKGHPNKPEDIAVIEVDDPLAAMQ 90
Query: 123 CYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG 180
AR + + +VG+TGS GK+TTK MIA L S NV ++ N+NN +GV ++++
Sbjct: 91 ELARYYLRKVNPTVVGITGSNGKTTTKDMIAAVL-SKRFNVHKTQANFNNEIGVPMTILE 149
Query: 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240
+ +I VLEMGM G++ L+ + P++ V+ +G++H+E GS + +A AK EI
Sbjct: 150 MKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITD 209
Query: 241 ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
+ + N D+PL+ K FG+R D V A + +
Sbjct: 210 FLREDGEFIFNGDEPLLQERAEKLDQAKATFGFR---DEDTVHATGFKSYMHHATFTVND 266
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK 360
E KF IP G H NA AA +V FG S ++ SLSNF+P R E +G
Sbjct: 267 SEQ-KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPTANRMEWEKGDAGES 325
Query: 361 IVNDAYNANPISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDAC 418
I++D YN+NP + RA + + G+R+ +LGDMLELG E H +
Sbjct: 326 IMSDIYNSNPTAVRAVLTSFGQVEVKDGGRRIAVLGDMLELGKKSPELHAGLADTMDPQI 385
Query: 419 IDLIGLVG 426
I+ + L G
Sbjct: 386 INEVYLYG 393
>gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus jensenii JV-V16]
gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus jensenii JV-V16]
Length = 455
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 190/378 (50%), Gaps = 25/378 (6%)
Query: 31 EIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
EIA++++ I P I + D+R + N+N F + G+ D H+FI+ + G V
Sbjct: 7 EIAKALDTTIEGNSDPVISSVAFDSRKI--NENALFVPLKGER-DGHDFINSAI-ANGAV 62
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+ W+KG N V +TL ++ +A Y N + + +VG+TGS GK+
Sbjct: 63 ATL-------WEKGHPNKPDNFPVVEVDDTLAAMQELAKYYLN-KVNPAVVGITGSNGKT 114
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK M+A L S NV ++ N+NN +GV ++++ + +I VLEMGM G++ L+
Sbjct: 115 TTKDMVAAVL-SKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLS 173
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+ +P++ V+ +G++H+E GS + +A AK EI K + N D+PL+
Sbjct: 174 SLVKPDVCVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKI 233
Query: 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
K FG+ D + A + + E KF IP G H NA AA
Sbjct: 234 SQAKSTFGFN---DQDTIYALEFKSYMHHASFVTSSSEQ-KFSIPMIGKHNVSNAMAAIC 289
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
V FG + ++ SLSNF+P R + G I++D YN+NP + +A + +
Sbjct: 290 VGHHFGETDDEIAASLSNFTPTANRMQWRKGDVGEDIMDDIYNSNPTAAKAVLTSFGQVE 349
Query: 385 C--NGKRVVILGDMLELG 400
G+R+ +LGDMLELG
Sbjct: 350 VPEGGRRIAVLGDMLELG 367
>gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Oligotropha carboxidovorans OM5]
gi|337741938|ref|YP_004633666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Oligotropha carboxidovorans OM5]
gi|386030954|ref|YP_005951729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Oligotropha carboxidovorans OM4]
gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
carboxidovorans OM5]
gi|336096022|gb|AEI03848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Oligotropha carboxidovorans OM4]
gi|336099602|gb|AEI07425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
[Oligotropha carboxidovorans OM5]
Length = 478
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 134/414 (32%), Positives = 202/414 (48%), Gaps = 26/414 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
+ +WT +AE+++ P I I D+R +AP + +FAI G D H F+
Sbjct: 2 TTALWTTAAMAEAMHATRSGALPESINGISIDSRTIAPG--EAYFAIKGDVHDGHAFVEA 59
Query: 81 ELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L G + VI + D + V + L LV++A AR +R +V VT
Sbjct: 60 ALKNGGGLAVIAQSQRAKFSGDLPLLVVP-----DVLAGLVDLAKAAR-ARTQAKIVAVT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK++TK + L++ G S ++NN GV LSL + AV E+GM+ G
Sbjct: 114 GSVGKTSTKEALRTVLQAQGAT-HVSAASFNNHWGVPLSLARCPQDAKFAVFEIGMNHAG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L ++ RP + ++ V HLE +E +A AK EIF + G +LN D+ A
Sbjct: 173 EIEPLVKLVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAILNRDNSQFA 232
Query: 259 NLTVPR---GV-RKVFFGWRRGCDVRLVAAQVANGGLGVQV-VLEKEREMVKFVIPSPGL 313
L GV R V FG D RL+ + V VL+ + V + + G
Sbjct: 233 RLAERAKACGVARIVTFGENEHADARLLDVALHAECSAVHADVLDHD---VTYKVGVAGR 289
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANP 370
H+A+N+ A A +TL G LA ++L+ F P +R L + +++++YNANP
Sbjct: 290 HMAMNSLAVLAASTLVGGDLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANP 349
Query: 371 ISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
S AA+ +L +A G+R+ +LGDMLELG RE H + + IDL+
Sbjct: 350 ASMAAAMSVLGRVAIGPQGRRIAVLGDMLELGPQGRELHRGLAAAITANRIDLV 403
>gi|434403084|ref|YP_007145969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cylindrospermum stagnale PCC 7417]
gi|428257339|gb|AFZ23289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cylindrospermum stagnale PCC 7417]
Length = 451
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 199/386 (51%), Gaps = 35/386 (9%)
Query: 32 IAESVN---GKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
+A+ VN + +WG I TDTR L P + F A+ G+ FD H FI + V
Sbjct: 15 LAQPVNLSASALAQWGSG--IQTDTRKLKPG--EVFVALRGEKFDGHTFIPTAMAIGALV 70
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
++ + N GF + +TL + +A + R R ++GVTGSVGK+TTK
Sbjct: 71 AIVDFEYDN---PGFPVLRVK---DTLKAYQQIAGWWRQ-RLQIPVIGVTGSVGKTTTKE 123
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
+IA L + G V ++YGN+NN +GV +L+GI D AV+EM M G+G+I EL ++ +
Sbjct: 124 LIAAVLATQG-RVHKTYGNFNNEIGVPKTLLGISAEHDFAVIEMAMRGRGQIAELTQITQ 182
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK 268
P I ++ NVG +H+E LGS E +A AK E+ E V +LN D+PL+ K
Sbjct: 183 PTIGLITNVGTAHIELLGSEEAIAEAKCELLAEMPADSVAILNHDNPLLMATAAKVWTGK 242
Query: 269 VFFGWRRGCDVRLVAAQVANGGLGVQVVLEK-EREMVKFVIPSPGLHLAINACAAAAVAT 327
V G D++ GV + E E + +P PG H A N AA AVA
Sbjct: 243 VLTYGFSGGDIQ-----------GVLIDNETVEVAGIPIPLPLPGRHNATNFLAALAVAQ 291
Query: 328 LFGV--SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
+ + S Q G+ ++ + RS+ + + I+++ YNA P + AA+ LL D
Sbjct: 292 VLEIDWSCLQAGVMVNMPTG---RSQRFALANDVLILDETYNAAPEAMLAALHLLAD--T 346
Query: 386 NGKR-VVILGDMLELGSTERESHEKI 410
GKR + +LG M ELG + H+++
Sbjct: 347 PGKRKIAVLGAMKELGERSPQLHQRV 372
>gi|33593958|ref|NP_881602.1| bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Bordetella pertussis Tohama I]
gi|384205262|ref|YP_005591001.1| D-alanine--D-alanine ligase [Bordetella pertussis CS]
gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella pertussis Tohama I]
gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS]
Length = 945
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 184/385 (47%), Gaps = 18/385 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ- 105
G + TDTR + + + F A++G++FD H+++ C V+ + V D Q
Sbjct: 508 GAVSTDTRRI--GRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA---DVALPQL 562
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN--VFQ 163
V G+ TL +L M R+S F+ +V VTGS GK+TTK MI+ L +
Sbjct: 563 VLGD----TLAALGRMGTAWRSS-FTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLA 617
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +GV L+L+ + AV E+GM+ GEI LA MA P + +V N H E
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQE 677
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLV 282
+ ++E VA G + V V D+P A G R+V FG + G DV
Sbjct: 678 FMHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQPGLDV--Y 735
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A +V G Q + +P PGLH NA AA A G L +L+
Sbjct: 736 AERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAG 795
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F V R + G +++D YNANP S RAAID+L + R ++LGDM E+G
Sbjct: 796 FQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPA--PRALVLGDMGEVGDN 853
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
H ++ Y + ID + +G+
Sbjct: 854 GPAMHREVGDYAREHGIDALITLGE 878
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 146/401 (36%), Gaps = 43/401 (10%)
Query: 24 SPIWTINEIAESVNGKILKW-----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
SP +N + + L W P + D+R + P F A G D +F+
Sbjct: 2 SPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGD--VFVACPGLVSDGRQFM 59
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L +G ++ Q + TL + Y R S+ V V +T
Sbjct: 60 DQAL-ARGASAILYETEGAPVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSV-VAIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
G+ GK++ +A L +G S G + SL G D+ + ++
Sbjct: 118 GTNGKTSCTQWLAQVLTRMG-KPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMR 176
Query: 199 EI-------------LELARMARPEIRVV--LNVGDSHLESLGSLEDVARAKGEIFQESK 243
+E R+ I V N+ HL+ G+++ +AK +FQ
Sbjct: 177 AAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPD 236
Query: 244 LGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKE 300
L V+NADDP L ++P ++ + DV Q A+G + + + E
Sbjct: 237 L-QAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLTLPDGE 295
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR---------SE 351
++V ++ G H N A + G L Q+ L+ SPV R
Sbjct: 296 VQIVTRLL---GQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQH 352
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNGKRVV 391
L G +V D Y P + A+ L+ +A G R+V
Sbjct: 353 LTAGAQGALVVVD-YAHTPDALARALTALRPVAQARGGRLV 392
>gi|383764769|ref|YP_005443751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381385037|dbj|BAM01854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 505
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 183/331 (55%), Gaps = 23/331 (6%)
Query: 113 NTLNSLVNMACYARNSRFSGVL--VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNN 170
+++ +L + + R R + L VGVTGSVGK++TK + A L V S GN N+
Sbjct: 106 DSIEALQKVGSFQRVHRTNATLKVVGVTGSVGKTSTKELTAHVLRQRYVT-HASPGNLNS 164
Query: 171 RVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLED 230
G+ L+L+G++ + AVLEMGM G GEI L +ARP+I +V NVG HL LG++E
Sbjct: 165 EQGLPLALMGLNTTHEYAVLEMGMYGLGEIDRLCVLARPQIGIVTNVGPVHLSRLGTMER 224
Query: 231 VARAKGEIFQ---ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+A+AK E+ + ++ G V +LN DD V + R + +G D L A +
Sbjct: 225 IAQAKSELVRALPSAEEGGVAILNWDDERVRAMAEVTRARVIRYGLTPEAD--LWADDIE 282
Query: 288 NGGL-GVQVVL------EKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
+ G+ G++ + E++ E + P G H A AAAV L G+S ++ +
Sbjct: 283 SMGMEGIRFRVYHRLWNEQKVESLHVKAPLLGRHSVHTALCAAAVGLLAGLSWGEI---I 339
Query: 341 SNFSPVQMRSELLVSR--SGIKIVNDAYNANPISTRAAIDLLKDI--ACNGKRVVILGDM 396
+ F V + L+V R G +++D YNA+P ST AA++LL DI A G+R+ +LGDM
Sbjct: 340 AGFQSVAGQLRLVVVRGIHGSTVIDDTYNASPASTIAALNLLADIQPAEGGRRIAVLGDM 399
Query: 397 LELGSTERESHEKILSYCCDACIDLIGLVGD 427
LELGS E E H KI+ +D++ VG+
Sbjct: 400 LELGSYETEGH-KIVGRRAADVVDILLTVGE 429
>gi|410633921|ref|ZP_11344561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
arctica BSs20135]
gi|410146581|dbj|GAC21428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Glaciecola
arctica BSs20135]
Length = 469
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 199/402 (49%), Gaps = 22/402 (5%)
Query: 32 IAESVNGKILKWGPPGII----CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
+AE VNG+++ +I TDTR + F A+ G +FD H+FI + KG
Sbjct: 9 VAEQVNGQLIAQQQQNLIIEGVSTDTRSI--QSTDLFLALKGPNFDGHKFIQ-QAEEKGA 65
Query: 88 VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTK 147
V +I +Q + ++ VE TL + + A ++ + VG+TGS GK+T K
Sbjct: 66 VALILSQHVDT-KLPYILVEDT----TLA--LGLLGAAVKAKVAPKTVGITGSSGKTTVK 118
Query: 148 SMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207
M+A L G V + GN+NN +GV ++L+ +++ + AV+EMG + GEI +
Sbjct: 119 EMVAAILSRRG-KVLATNGNFNNELGVPMTLLRLEQQHEFAVIEMGANHLGEIAYTTNLV 177
Query: 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE-SKLGDVCVLNADDPLVANLTVPRGV 266
+P++ ++N +HLE GSL VARAK EIF+ S+ + ++NAD
Sbjct: 178 KPDVATIVNAAAAHLEGFGSLLGVARAKSEIFKGLSEEDGLAIVNADSQFADYWLGKLKY 237
Query: 267 RKV-FFGWRRGCDVRLVAAQVANGGLG-VQVVLEKEREMVKFVIPSPGLHLAINACAAAA 324
KV F + DV A + G G Q L + + + PG H NA A A
Sbjct: 238 NKVQTFSAEKPADV--YAEDIILGLDGCAQFELVTPKGRIAISLSLPGEHNVSNALVATA 295
Query: 325 VATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384
+A G +L V L + V R + + +KI++D YNAN S AAIDLL A
Sbjct: 296 LALEVGATLQDVREGLRDMPHVAGRLHVKQLTNQVKILDDTYNANVGSVNAAIDLLSSFA 355
Query: 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
G ++++LGDM ELG R HE++ Y ID + +G
Sbjct: 356 --GIKILVLGDMAELGEKARYYHEQVGEYAKQKGIDKLYTLG 395
>gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Coprobacillus sp. 29_1]
gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Coprobacillus sp. 29_1]
Length = 449
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 205/405 (50%), Gaps = 21/405 (5%)
Query: 27 WTINEIAESVNGKIL----KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I EI E+ NG++L ++ G DTR + + + G++ D H++I+ +
Sbjct: 1 MQIKEIIEATNGQLLSGDMEYDVNGF-TQDTRKIESGN--MYIPLVGENADGHQYIA-QA 56
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ G +I + DK + V+ +TL ++ +MA Y R R V VG+TGSVG
Sbjct: 57 FNLGASSIITAHKVHYPDKNVILVK-----DTLQAMSDMAKYLRMHRQVKV-VGITGSVG 110
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++TK MI ++ S ++ GN+NN +G+ L+++ + ++ +LEMGM+ GEI
Sbjct: 111 KTSTKDMI-YSVVSTKYKTLKTLGNYNNHIGLPLTILRLQNE-EVMILEMGMNHLGEIEH 168
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L ++A P++ + N+G +H+ LGS E + +AK EI K V+N D+ ++ +
Sbjct: 169 LTQIALPDVAAITNIGTAHIGELGSREKILQAKMEIVNGLKSDGTLVINDDNDMLHTVN- 227
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
+ G CD++ + ++ + + +R V +P G H NA A
Sbjct: 228 AENYHMIRVGQNEDCDLKAIDVELRLEDSYFDIDYQGQRYHVH--VPVSGEHFVYNALIA 285
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
A+ + + + +F + R +++ + IK+++ YNAN S ++++ +L
Sbjct: 286 IAIGLSLDIDMNLCIAGVEHFELTKNRMDMIELKDNIKVIDGTYNANLDSMKSSLAVLAQ 345
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+++ +L DMLELG E+ HE++ SY + ID + VG+
Sbjct: 346 YP--KRKIAVLADMLELGEYEQALHEEVGSYVVEKNIDELLCVGE 388
>gi|408416921|ref|YP_006627628.1| murein biosynthesis bifunctional protein [Bordetella pertussis
18323]
gi|401779091|emb|CCJ64574.1| Possible murein precusor biosynthesis bifunctional protein
[Bordetella pertussis 18323]
Length = 945
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 184/385 (47%), Gaps = 18/385 (4%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ- 105
G + TDTR + + + F A++G++FD H+++ C V+ + V D Q
Sbjct: 508 GAVSTDTRRI--GRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA---DVALPQL 562
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVN--VFQ 163
V G+ TL +L M R+S F+ +V VTGS GK+TTK MI+ L +
Sbjct: 563 VLGD----TLAALGRMGTAWRSS-FTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLA 617
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ GN+NN +GV L+L+ + AV E+GM+ GEI LA MA P + +V N H E
Sbjct: 618 TAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQE 677
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLV 282
+ ++E VA G + V V D+P A G R+V FG + G DV
Sbjct: 678 FMHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQPGLDV--Y 735
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A +V G Q + +P PGLH NA AA A G L +L+
Sbjct: 736 AERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAG 795
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F V R + G +++D YNANP S RAAID+L + R ++LGDM E+G
Sbjct: 796 FQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPA--PRALVLGDMGEVGDN 853
Query: 403 ERESHEKILSYCCDACIDLIGLVGD 427
H ++ Y + ID + +G+
Sbjct: 854 GPAMHREVGDYAREHGIDALITLGE 878
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 147/401 (36%), Gaps = 43/401 (10%)
Query: 24 SPIWTINEIAESVNGKILKW-----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFI 78
SP +N + + L W P + D+R + P F A G D +F+
Sbjct: 2 SPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGD--VFVACPGLASDGRQFM 59
Query: 79 SPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L +G ++ + Q + TL + Y R S+ V V +T
Sbjct: 60 DQAL-ARGASAILYETEGASVAPVGAQALPVAQLRTLLGALADEWYGRPSQDLSV-VAIT 117
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
G+ GK++ +A L +G S G + SL G D+ + ++
Sbjct: 118 GTNGKTSCTQWLAQVLTRMG-KPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMR 176
Query: 199 EI-------------LELARMARPEIRVV--LNVGDSHLESLGSLEDVARAKGEIFQESK 243
+E R+ I V N+ HL+ G+++ +AK +FQ
Sbjct: 177 AAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPD 236
Query: 244 LGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQ-VANGGLGVQVVLEKE 300
L V+NADDP L ++P ++ + DV Q A+G + + + E
Sbjct: 237 L-QAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLALPDGE 295
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR---------SE 351
++V ++ G H N A + G L Q+ L+ SPV R
Sbjct: 296 AQIVTRLL---GQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQH 352
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNGKRVV 391
L G +V D Y P + A+ L+ +A G R+V
Sbjct: 353 LTAGAQGALVVVD-YAHTPDALARALTALRPVAQARGGRLV 392
>gi|423319651|ref|ZP_17297526.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lactobacillus crispatus FB049-03]
gi|423320327|ref|ZP_17298199.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lactobacillus crispatus FB077-07]
gi|405587867|gb|EKB61590.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lactobacillus crispatus FB049-03]
gi|405606280|gb|EKB79273.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Lactobacillus crispatus FB077-07]
Length = 455
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 177/365 (48%), Gaps = 13/365 (3%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
F + G+ D HEFI+ + G + + N + +E + + + L
Sbjct: 40 FVPLEGER-DGHEFIASAI-NNGASATLWKKGHPNKSEDIAVIEVDDPLAAMQELAR--Y 95
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
Y R + + +VG+TGS GK+TTK MIA L S NV ++ N+NN +GV ++++ +
Sbjct: 96 YLR--KVNPTVVGITGSNGKTTTKDMIAAVL-SKRFNVHKTQANFNNEIGVPMTILEMKP 152
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
+I VLEMGM G++ L+ + P++ V+ +G++H+E GS + +A AK EI +
Sbjct: 153 NTEILVLEMGMDRPGQLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLR 212
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREM 303
+ N D+PL+ K FG+R D V A + + E
Sbjct: 213 EDGEFIFNGDEPLLQERAEKLDQAKATFGFR---DEDTVHATGFKSYMHHATFTVNDSEQ 269
Query: 304 VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVN 363
KF IP G H NA AA +V FG S ++ SLSNF+P R E +G I++
Sbjct: 270 -KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPTANRMEWEKGDAGESIMS 328
Query: 364 DAYNANPISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDL 421
D YN+NP + RA + + G+R+ +LGDMLELG E H + I+
Sbjct: 329 DIYNSNPTAVRAVLTSFGQVEVKDGGRRIAVLGDMLELGKKSPELHAGLADTMDPQIINE 388
Query: 422 IGLVG 426
+ L G
Sbjct: 389 VYLYG 393
>gi|27808668|sp|O33804.2|MURF_STRTO RecName: Full=Probable
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
AltName: Full=UDP-MurNAc-pentapeptide synthetase
gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis]
Length = 446
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 145/388 (37%), Positives = 203/388 (52%), Gaps = 29/388 (7%)
Query: 29 INEIAESVNGKI----LKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ EIAE V GK + P ++ D+R P F A G+H D H++ E G
Sbjct: 6 LGEIAEIVGGKATGESVTVTAPAVL--DSRQAEPGG--LFVAFAGEHADGHDYA--ERAG 59
Query: 85 K-GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVG 142
+ G V V+G++ + V VE +V T +L +A + G+ +VGVTGS G
Sbjct: 60 RAGAVAVLGSRPTSLP---TVVVE---DVRT--ALQTLAAHVVARLRDGLTVVGVTGSQG 111
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+ TK ++A L G V + G+ NN +GV L+++ A VLEMG +G+I E
Sbjct: 112 KTGTKDLLAAVLSGAGPTV-ATTGSLNNELGVPLTMLRAQAATRFLVLEMGARHEGDIAE 170
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
L + P+I VVLNVG +HL GS +ARAKGE+ Q G VLNADDP VA+++V
Sbjct: 171 LTGLVAPDIAVVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGTAVLNADDPRVASMSV 230
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLG-VQVVLEKEREMVKFVIPSPGLHLAINACA 321
+ FG DV+++ V LG L + +P G H A+NA A
Sbjct: 231 LTDGPVLTFGRTDPADVQVL--DVVLDRLGRPSCTLRTVDTSARLALPLVGAHQALNASA 288
Query: 322 AAAVATLFGV--SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AAA A GV LA ++ ++ SP +M EL G ++ND+YNANP STRAA+D
Sbjct: 289 AAAAALAAGVPLDLATTALTTASLSPWRM--ELRDLACGATLLNDSYNANPDSTRAALDA 346
Query: 380 LKDIACNGKRVVILGDMLELGSTERESH 407
L I G+R+ +LG+MLELG H
Sbjct: 347 LSAIE-GGRRIAVLGEMLELGDGSEAEH 373
>gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ochrobactrum intermedium LMG 3301]
gi|444310524|ref|ZP_21146145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Ochrobactrum intermedium M86]
gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ochrobactrum intermedium LMG 3301]
gi|443486086|gb|ELT48867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Ochrobactrum intermedium M86]
Length = 476
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 198/412 (48%), Gaps = 26/412 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+W +++ E++ G+ P GI I D+R L P + FFAI G+ FD H+F++ +
Sbjct: 5 LWKSDDMVEAMEGRPFGNLPGGITGISIDSRSLKPG--EAFFAIKGEQFDGHDFVTAAMA 62
Query: 84 -GKGCVGVIGNQV--CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G G + V +++ N + VE + L +L + +R +R ++ VTGS
Sbjct: 63 AGAGLIVVAEHRLPAFGNSKVPMIVVE-----DVLEALTKLGIASR-ARSKAQIIAVTGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + D V E+GM+ EI
Sbjct: 117 VGKTTTKEALRHVLSEVG-KVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLV 257
L +M RP + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 176 RPLVKMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQL 235
Query: 258 ANLTVPRGVRK-VFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV V FG D RL ++ + V VK + PG H+
Sbjct: 236 EELAEKAGVEHIVTFGENARSDYRLREVKLHPTCSCMTVKAGTHEAAVK--VGMPGRHIV 293
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ + R L +++++YNANP S
Sbjct: 294 QNMLAVLGAADLVGADIAKVMMAMATLTAEGGRGARHVLQHPEGTFTLIDESYNANPTSM 353
Query: 374 RAAIDLLKDIA---CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
RAA+ LL A G+R+ +LGDMLELG + H + DA ++ +
Sbjct: 354 RAALSLLHSTAPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNAL 405
>gi|414343297|ref|YP_006984818.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconobacter oxydans
H24]
gi|411028632|gb|AFW01887.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanyl ligase
[Gluconobacter oxydans H24]
Length = 458
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 197/405 (48%), Gaps = 27/405 (6%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL- 82
S +WT E+ ++ +G + I DTR L P F A+ G+ D HE I+ L
Sbjct: 2 SALWTSQELRDATHGTLAADVSVTGISIDTRTLKPG--DLFIALKGETSDGHEHIAQALE 59
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G CV V Q + D + V NT+ L + YARN RF G ++ VTGSVG
Sbjct: 60 AGAACVMVHDTQ--GSTDPRLLIV-----ANTMRGLEALGRYARN-RFDGKVIAVTGSVG 111
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK M+ AL +LG + ++NN GV L+L + R + E+GM+ GEI
Sbjct: 112 KTTTKDMLRTALSALG-PTHAAVASYNNHWGVPLTLARLARDARFCISEVGMNHVGEIAP 170
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-- 260
LA RP I ++ +G +HL +GS+E++AR K +F + ++ DD + +L
Sbjct: 171 LAAQVRPNIAIITTIGTAHLGHMGSVEEIAREKATLFGALLVNGTAIV-PDDAVGQDLFR 229
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+P + G ++RL G + L + +M + +PG HLA NA
Sbjct: 230 AALPAHTKLWHSGLSATSEIRLTGLVCTADGSDFVLTLPEVGDM-SVHLNAPGRHLARNA 288
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
A G +++ +L++F P R ++ +G+++++++YNA+ S R+ ++
Sbjct: 289 ALALGTVDALGEDVSKAAHALTDFVPGSGRGQMRAVLNGVQLLDESYNASTTSIRSTLET 348
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKI---------LSYCC 415
L + +R+ LGD+ ELG+ H + +++CC
Sbjct: 349 LALLPAK-RRIAALGDIRELGTFADAEHRSLADAVIAANAIAFCC 392
>gi|237654088|ref|YP_002890402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
MZ1T]
gi|237625335|gb|ACR02025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
MZ1T]
Length = 470
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 132/397 (33%), Positives = 199/397 (50%), Gaps = 24/397 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ-VCNNWDKGFVQVE 107
+ TDTR LAP Q F A+ G+ FD H+F++ ++ D G +
Sbjct: 27 VGTDTRALAPG--QLFVALRGERFDGHDFVADAAKAGAAAAMVDAAWSAGKADAGLPLLV 84
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL------ESLGV-N 160
+ L +L A +RF+ L+GVTGS GK+T K M A L + G +
Sbjct: 85 VDDTRRALGTL----AAAWRARFALPLIGVTGSNGKTTVKEMCAAILRVQASRDGFGEES 140
Query: 161 VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220
V + GN NN +G+ L+L+ + AV+EMGM+ GEI L+ +A+P + +V N +
Sbjct: 141 VLATRGNLNNDIGMPLTLLELRDFHRAAVIEMGMNHPGEIGYLSALAQPTVALVNNAQRA 200
Query: 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRGVRKVFFGWRRGC 277
HL+ +GS+++VAR KG I++ V V+NADDP +L R + V FG
Sbjct: 201 HLQGMGSVDEVAREKGAIYEGLGGAGVAVINADDPHAGYWRSLNAGRPI--VTFGIDHPA 258
Query: 278 DVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337
D V+A+ GLG ++ L+ + + F + PGLH NA AAA GV L V
Sbjct: 259 D---VSARCTLRGLGSRLELDIPQGKIDFALQVPGLHNVRNALGAAAACLAAGVPLEAVA 315
Query: 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDML 397
L+ F+ + R + G I++D+YNANP S R ID+L A G ++LGDM
Sbjct: 316 EGLAGFAGTRGRLQRRSGPRGALILDDSYNANPDSVRVGIDVLA--AMPGHTWLVLGDMG 373
Query: 398 ELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCK 434
E+G T + H+++ Y ID + +G+ V
Sbjct: 374 EVGETSAQVHDEVGGYAKSKGIDGLFALGEMSAVAAH 410
>gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
proteobacterium IMCC1989]
gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
proteobacterium IMCC1989]
Length = 473
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 189/381 (49%), Gaps = 34/381 (8%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN----WDKGFVQVEGNGNVNTLNSLV 119
F AI G FD H+F++ V+ ++ ++ W G +T +L
Sbjct: 43 FVAIKGDQFDGHQFVANAQNQGAIALVVEKEIVDSDLPQWLVG----------DTTLALG 92
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE-SLGVNVFQSYGNWNNRVGVALSL 178
++A R++ F G +V +TGS GK+T K M+ L ++ +VF + GN NN +GV LSL
Sbjct: 93 HIAEAQRDN-FLGKIVAITGSSGKTTVKGMLESILRVAVSDHVFATKGNLNNHIGVPLSL 151
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + AV+EMG S GEI L +MA+P++ ++ NV +H+E GS++++A+ KGEI
Sbjct: 152 LSLKSQHQYAVIEMGASAVGEIQYLTQMAKPDVAMINNVMSAHVEGFGSIDNIAKGKGEI 211
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFF-----GWRRGCDVRLVA-------AQV 286
+ V V+N D R+ D+ VA Q
Sbjct: 212 YNGLTNAGVAVINIADKYAPQWLEQNSQRQTLLFSASTDVSNAMDMNSVANITATNVKQK 271
Query: 287 ANGGLGVQV-VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
NG + +LEK E+ V+ G+H NA AA+ A +S+ + LS F+
Sbjct: 272 HNGCAKFDLQLLEKSTEINLSVL---GMHNVANALAASTCAYALNISIEDIAQGLSEFTG 328
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
V R L + +++D+YNANP S AAID+L D++ K V+++GDM ELG
Sbjct: 329 VAGRLHCLEGVNDSTVIDDSYNANPNSFCAAIDVLSDMSA--KTVLVMGDMAELGDDSDS 386
Query: 406 SHEKILSYCCDACIDLIGLVG 426
HEKI Y + IDL+ +G
Sbjct: 387 EHEKIGRYANEKNIDLLLTLG 407
>gi|340751157|ref|ZP_08687980.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
Length = 426
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 199/382 (52%), Gaps = 31/382 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R + K+ FFAI + +++I E+ +G VI + + D + VE
Sbjct: 23 VVMDSRKIE--KDSLFFAIN----NGNKYID-EVLERGATLVIADDYSGD-DSRVIVVE- 73
Query: 109 NGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
+T+ ++ ++A R + GV ++ +TGS GK+TTK MI L S ++ GN
Sbjct: 74 ----DTIKAMQDLAQEYRKAL--GVKVIAITGSNGKTTTKDMIYSVL-SQKYRCKKTEGN 126
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ +++ +D +++VLEMGMSG GEI L +A+P+ ++ N+GDSHLE L +
Sbjct: 127 YNNHIGLPFTILQLDDTDEVSVLEMGMSGFGEIDRLCEIAKPDYALITNIGDSHLEFLKT 186
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E+V +AKGEI + + + ++ DD + NL+ + G+ + C R+
Sbjct: 187 RENVFKAKGEIIKYV-VSENLIIFGDDYYLKNLS------GITVGYEKNCKKRI--ENFK 237
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
+ G++ LE + I G H IN A V ++ ++ N +
Sbjct: 238 DTDEGIEFSLEGNN----YKINLNGKHNCINGAMAVVVGMSLDLTSEEIQKGFDNLNLTP 293
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
MR + +V + I NDAYNA+PIS R +++ + + ++ +LGDMLELG E E H
Sbjct: 294 MRFQKIVKGETLYI-NDAYNASPISMRYSLETFDKLYNDRTKIAVLGDMLELGDKEIEFH 352
Query: 408 EKILSYCCDACIDLIGLVGDRV 429
+I+ D +D I + G+R+
Sbjct: 353 REIIKKALDIKVDRIYIYGERM 374
>gi|406831013|ref|ZP_11090607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanyl ligase [Schlesneria
paludicola DSM 18645]
Length = 473
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 197/400 (49%), Gaps = 24/400 (6%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
TI + + G++ P + D+R + + F+A+ G+ D H F + L
Sbjct: 5 TIRNLMLATGGRLRDLNTPDTEFDRVSIDSRDV--RRGDIFWALRGEREDGHNFTAQALE 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + V+ + V+ + L++L + R + +++GVTGSVGK
Sbjct: 63 RQAHLCVVSADRAERLTGPMLIVD-----DPLSALGRFGNWYRR-QMDAMVIGVTGSVGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TT+ +I AL S +S N+N+++G+ LSL+ +D+ + AVLEMG S G I L
Sbjct: 117 TTTRELIFSAL-SDHFEGTRSPSNFNSQIGLPLSLLELDQEHEFAVLEMGASEIGNIRRL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+A PE+ V+ VG +HLES GS+E + KGE+ ++ VL DD V +
Sbjct: 176 CELALPEVGVITAVGAAHLESFGSIEAIVETKGELLEQLPTTGFAVLPGDDSTVRQMADR 235
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
+F G +G D + A VA +Q E R F +P G HL NA A
Sbjct: 236 APCPVIFVG--QGDDNHIQATDVAIHNRCLQFSCEGAR----FSLPLSGRHLISNALCAI 289
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI-KIVNDAYNANPISTRAAIDLLKD 382
A+ G+S + L+ FSP+ R + ++ G ++++ YNA+P++ AA LL D
Sbjct: 290 AIGLEVGMSPCAIASGLAKFSPLAGRGRM--TQVGTWTVIDETYNASPLAVSAACRLLAD 347
Query: 383 IACNG--KRVVILGDMLELGSTERESHEKILSYCCDACID 420
+ +R+++LGDMLELG + HE+I C+D
Sbjct: 348 TSTPAMSQRLLVLGDMLELGPSAAHEHERIGQLAAQLCVD 387
>gi|425438296|ref|ZP_18818701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9432]
gi|389676601|emb|CCH94437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9432]
Length = 454
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 135/390 (34%), Positives = 200/390 (51%), Gaps = 40/390 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG----FV 104
I TD+R + Q F A+ G +F+ H+FI + ++ V N K V
Sbjct: 33 INTDSRSI--ESGQAFLALKGDNFNGHDFIDMAIERGAAALIVDQPVSVNSSKNIPVFLV 90
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
Q NTL + + + RN +F+ ++ +TGSVGK+TTK +IA L + G V ++
Sbjct: 91 Q-------NTLETYQQLGHWWRN-QFTIPVIAITGSVGKTTTKELIASVLATRG-KVHKT 141
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N+NN +GV +L+ +D D AV+EMGM G+GEI LA++A+P I V+ NVG +H+
Sbjct: 142 LANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIGR 201
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR--GVRKVFFGWRRGCDVRLV 282
LGS +A AK E+ ES G + VLN D PL+ T R + +G+ G D+
Sbjct: 202 LGSESAIAEAKCELLSESPSGSIAVLNYDHPLLTE-TAKRVWQGETITYGF-SGGDI--- 256
Query: 283 AAQVANGGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGV--SLAQVGIS 339
+G + L R + F +P G H A+N AA AVA + G+ + Q GI
Sbjct: 257 --------VGELLDLTTLRVNGLDFNLPLSGRHHALNFMAALAVAKILGIDWTSLQQGIK 308
Query: 340 LSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLE 398
++ S R +L I ++++ YNA S AA+DLLK A G+R + +LG M E
Sbjct: 309 VNLPSGRAKRYQL---EPDILLLDETYNAGLESMLAALDLLK--ATPGQRHLAVLGTMKE 363
Query: 399 LGSTERESHEKILSYCCDACID-LIGLVGD 427
LGS + H ++ ID L LV D
Sbjct: 364 LGSFSEQLHRQVGERVQKLGIDRLFVLVDD 393
>gi|188584360|ref|YP_001927805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium populi BJ001]
gi|179347858|gb|ACB83270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Methylobacterium populi BJ001]
Length = 487
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 200/430 (46%), Gaps = 44/430 (10%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFI 78
S++P+WT + + G+++ G P + DTR L P FFAI G+ D H+F+
Sbjct: 2 SDAPLWTPAALESATGGRLI--GAPRAVTGASIDTRSLEPG--DLFFAIRGEARDGHDFV 57
Query: 79 SPELYGKGCVGVIGNQVCNNWDK--GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVG 136
L V+ N ++ + V G L ++ + AR +R +V
Sbjct: 58 RAALEKGAGAAVVAAARANEFEGVGPVLAVPGEDEDPVLEAMRRLGLAAR-ARTGAAIVA 116
Query: 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSG 196
VTGSVGK+ TK + L + G S ++NN GV L+L + V E+GM+
Sbjct: 117 VTGSVGKTGTKEALRHVLSAQGAT-HASVASYNNHWGVPLTLARMPEQTRFGVFEIGMNH 175
Query: 197 KGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP- 255
EIL L M RP++ ++ V H+E SL +A AKGEIF K G V V+N D+P
Sbjct: 176 GAEILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPN 235
Query: 256 ---LVANLTVPRGVRKVFFGWRRGCDVR-----------LVAAQVANGGLGVQVVLEKER 301
L+A+ R R + FG DVR +V A V +GV +
Sbjct: 236 YERLLAHAHASRAGRVITFGEHAAADVRANRILTRPDVSVVDASV----MGVPLT----- 286
Query: 302 EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG--- 358
+ + +PG H+A+N+ A G LA+ +SL+ P R E R G
Sbjct: 287 ----YQLGTPGRHVAMNSLGVLACIHALGADLARAALSLAALKPPVGRGERTALRVGDGE 342
Query: 359 IKIVNDAYNANPISTRAAIDLLKDI--ACNGKRVVILGDMLELGSTERESHEKILSYCCD 416
+++++YNANP S RAA+ L I G+R+ +LGDM ELG+ H ++
Sbjct: 343 AFLIDESYNANPASIRAALATLAGIETGAKGRRIAVLGDMKELGAAGETHHRELADAVAG 402
Query: 417 ACIDLIGLVG 426
ID++ VG
Sbjct: 403 HGIDVVFAVG 412
>gi|418055090|ref|ZP_12693145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Hyphomicrobium denitrificans 1NES1]
gi|353210672|gb|EHB76073.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Hyphomicrobium denitrificans 1NES1]
Length = 472
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 133/412 (32%), Positives = 196/412 (47%), Gaps = 27/412 (6%)
Query: 25 PIWTINEIAESVNGKILKWG---PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
P+WT +E++ ++ K + G P + DTR L P F A+ Q D H+F+S
Sbjct: 3 PLWTFSELSAALGVKP-EGGVDRPVAGVSIDTRTLQPG--DLFVALKDQR-DGHDFVSSA 58
Query: 82 LYGKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFS--GVLVGVT 138
V+ + D ++V +TL L + AR +R + +V VT
Sbjct: 59 FEAGAAAALVVESYRRQPKDGALLRVP-----DTLRGLEALGRAAR-ARINPDARVVAVT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+ TK M+ L LG S ++NN GV L+L + R +V E+GM+ G
Sbjct: 113 GSAGKTGTKEMLRACLAHLGTT-HASEKSYNNHWGVPLTLARMSRETRFSVFEIGMNHAG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L +M RP +V V HLE S++ +A AKGEIF+ G V+ D+P
Sbjct: 172 EIRPLTKMVRPHAAIVTTVEAVHLEYFPSVQAIADAKGEIFEGLVPGGTAVIKYDNPHAG 231
Query: 259 NLT--VPR-GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHL 315
LT R G + V FG+ G DVR ++ G + V + R ++ + PG H+
Sbjct: 232 RLTSIAKRFGAKPVTFGFSAGADVRGDDLKLGYDGSALTVRFGERRIPLQLAM--PGRHI 289
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIS 372
A NA A A G + + L+N P RS L + +++++YNANP S
Sbjct: 290 AENALAVVAAIDAIGADVEKTLSVLANLQPPSGRGARSVLHIEGGEALLIDESYNANPAS 349
Query: 373 TRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
RAA+ L + +R+ +LGDMLELGS H+ + DA IDLI
Sbjct: 350 MRAALAALASVPRQKFSRRIAVLGDMLELGSDAPALHQGLKEAVEDAGIDLI 401
>gi|407785197|ref|ZP_11132345.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Celeribacter baekdonensis B30]
gi|407203229|gb|EKE73216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Celeribacter baekdonensis B30]
Length = 467
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 197/411 (47%), Gaps = 19/411 (4%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
N +WT +E + G + I DTR + P F D H+F++ L
Sbjct: 2 NGVLWTSDEAVAATGGHATQGFEITGISIDTRTIQPGD---LFVALADVRDGHDFVAQAL 58
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVN-TLNSLVNMACYARNSRFSGVLVGVTGSV 141
++ + KG + VN L +L + AR +R +G ++GVTGSV
Sbjct: 59 AKGAAAALV-----SRLPKGVTENAPLLIVNDVLPALERLGVAAR-ARVAGKVIGVTGSV 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK++TK M+ L G + ++NN GV L+L + R + AVLE+GM+ GEI
Sbjct: 113 GKTSTKEMLRAILSQQG-KTHAAEASYNNHWGVPLTLARMPRDTEFAVLEIGMNHPGEIA 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LARMA P++ ++ V +HL + ++E +A K IF+ + V V+N D + L
Sbjct: 172 PLARMACPDVAMITTVAPAHLAAFENIEGIAHEKAAIFEGLEPNGVAVINGDLAVTDILA 231
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+ FG C RL++ + +G E + + + F + + G H A NA
Sbjct: 232 AAWSGDMIRFGEDEACAARLISVDLEDGATLAHA--EIDTQSLDFRLSTAGRHFAANAVG 289
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSEL----LVSRSGIKIVNDAYNANPISTRAAI 377
AV G +AQ L+ ++P R L + I++++DA+NANP S AA+
Sbjct: 290 CLAVVYALGADVAQAARDLTLWAPPAGRGARETVGLPMGAPIELIDDAFNANPTSMGAAL 349
Query: 378 DLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
++L N G+RV ILGDMLELG E H+ + + A I+++ VG
Sbjct: 350 EVLAKATPNTGGRRVAILGDMLELGPQETAIHKGLATLPWFAVINVVHCVG 400
>gi|339479469|gb|ABE95937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bifidobacterium breve UCC2003]
Length = 481
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 209/417 (50%), Gaps = 27/417 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQW--FFAITGQHFDAHEFISPELYGK 85
++ EIA++V+G+++ I T+T + F AI G+ D H+F+
Sbjct: 5 SVEEIAKAVDGRLVAGDGSAIEATETVTDSRQAGSGAVFVAIKGERVDGHDFVDKVADQG 64
Query: 86 GCVGVIGNQV-CNNWDKGFVQVEGNGNVNTLNSLVNMACY--ARNSRFSGV--LVGVTGS 140
++ ++V C + V+ +T+ +L +A + R + G L+G+TGS
Sbjct: 65 AAAAIVDHEVACTTMPQIVVE-------DTVAALGLLAKHNIDRRRQLPGAFDLIGLTGS 117
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +++ L +LG V G++NN +G+ L+ + ++ V EMG + GEI
Sbjct: 118 VGKTTTKDLLSALLSTLGPTV-APIGSFNNEIGLPLTALRVNADTRFFVAEMGANHIGEI 176
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V +
Sbjct: 177 ARLTRIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDDYVVPM 236
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQ--VVLEKEREMVKFVIPSPGLHLAIN 318
++FG D + A +A + + E V + PG H +N
Sbjct: 237 AQLASGDVLWFGQGHTHDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGRHNVMN 296
Query: 319 ACAAAAVATLFGVSLAQVGISLS---NFSPVQMRSELLVSRSG--IKIVNDAYNANPIST 373
A AAA VA +G+ L + +L+ SP +M VSR G ++++D++NANP S
Sbjct: 297 ALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALS-TVSRQGASFELIDDSFNANPDSM 355
Query: 374 RAAIDLLKD-IACNGK---RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+A +D L+ A +G+ RV +LG MLELG+ ERE H + Y +D I VG
Sbjct: 356 KAGLDGLRAWNANDGRQPFRVALLGAMLELGADERELHASVGEYAAGLGLDAIITVG 412
>gi|58336605|ref|YP_193190.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
gi|227903162|ref|ZP_04020967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus acidophilus ATCC 4796]
gi|58253922|gb|AAV42159.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
gi|227869148|gb|EEJ76569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus acidophilus ATCC 4796]
Length = 455
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 177/369 (47%), Gaps = 21/369 (5%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGFV-QVEGNGNVNTLNSLVNM 121
F + G+ D H+F++ G I N W KG + EG + + L M
Sbjct: 40 FVPLEGER-DGHDFVA---------GAISNGASATLWKKGHPNKPEGIAVIEVDDPLAAM 89
Query: 122 ACYARN--SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
AR + + +VG+TGS GK+TTK MIA L S NV ++ N+NN +GV ++++
Sbjct: 90 QTLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVL-SKRFNVHKTQANFNNEIGVPMTVL 148
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+ +I VLEMGM G++ L+ + RP++ V+ +G++H+E GS + +A AK EI
Sbjct: 149 EMKPNTEILVLEMGMDRPGQLHHLSELTRPDVAVITMIGEAHIEFFGSRDKIADAKMEIT 208
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK 299
+ + N D+PL+ K FG+ D V A +
Sbjct: 209 DFLREDGEFIYNGDEPLLQERAKKLDQAKATFGFE---DDDTVHATGFKSYMHHATFTIN 265
Query: 300 EREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI 359
+ E KF IP G H NA AA +V FG S ++ SLSNF P R E G
Sbjct: 266 DSEQ-KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDVGE 324
Query: 360 KIVNDAYNANPISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDA 417
I++D YN+NP + RA I + G+R+ +LGDMLELG + H ++
Sbjct: 325 AIMSDIYNSNPTAVRAVITSFGQVEVKDGGRRIAVLGDMLELGENSPKLHAELSDTLDPQ 384
Query: 418 CIDLIGLVG 426
I+ + L G
Sbjct: 385 IINEVYLYG 393
>gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Agrobacterium sp. H13-3]
gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Agrobacterium sp. H13-3]
Length = 477
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 200/416 (48%), Gaps = 25/416 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT+ ++ G+ + P GI I D+R + + FFAI G D H++ S +
Sbjct: 4 LWTVADMIAITAGRPVGNLPTGITGISIDSRTV--KAGEAFFAIKGDRVDGHDYTSFAVA 61
Query: 84 -GKGCVGVIGNQV--CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G G + V ++ + VE + L +L +A AR R + ++ VTGS
Sbjct: 62 NGAGLLVVAEGKLPALGRLTVPMIVVE-----DVLAALGKLAIAARE-RTTARIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ AL G V + ++NN GV L+L + + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRQALAPSG-RVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +M RP + ++ + +HL + ++E++A AK EIF+ + G +LN D+ L
Sbjct: 175 RPLVKMVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEGLEDGGFVILNRDNAQFEQL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+G+ + FG D RL + + G + +L E + I PG H+A
Sbjct: 235 EEAAQDQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNI--PGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA A + G +L + L V+ R L + +++++YNANP S
Sbjct: 293 DNAMAVLGAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNANPASM 352
Query: 374 RAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
RAAI +L + G+RV +LGDMLE+G + HE++ I+ + L G+
Sbjct: 353 RAAIAVLAETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWLAGE 408
>gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bifidobacterium dentium Bd1]
gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
[Bifidobacterium dentium Bd1]
Length = 499
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 221/432 (51%), Gaps = 35/432 (8%)
Query: 21 PSNSPIWTINEIAESVNGKILKWGPPGI---------ICTDTRILAPNKNQWFFAITGQH 71
P+ P+ + EI ++V+G+++ GI C+D+R + + F AI G+
Sbjct: 5 PTMMPMG-LAEIEQAVHGRLVT--AEGISSNGAMATSACSDSRQV--REGSVFVAIAGER 59
Query: 72 FDAHEFISPELYGKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRF 130
D H+F+S ++ +G V ++ ++V D G Q+ + V L L R +
Sbjct: 60 VDGHDFVS-KVGAQGAVAALVDHEVA---DAGVPQIVVDDTVRALGELAKHNLERRRAIG 115
Query: 131 SG-VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAV 189
S ++G+TGSVGK+TTK ++A L ++G V G++NN +G+ L+ + ++ V
Sbjct: 116 SPFTVIGITGSVGKTTTKDLMASLLSAMGETV-APVGSFNNEIGLPLTALKVNAGTRFLV 174
Query: 190 LEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCV 249
EMG + GEI L + P+I VVL VG +HL GS E +A+AK EI + G V V
Sbjct: 175 AEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTV 234
Query: 250 LNADDPLVANLTVPRGVRKVFFG--WRRGCDVRLVAAQVANGGLGVQVVLE---KEREMV 304
LNA+D VA ++ ++FG RR D R+VAA+ E E E
Sbjct: 235 LNANDEHVAAMSGIAPGEVLWFGLPQRRTPD-RMVAAENVRCDELDHPSFELRDAEGECA 293
Query: 305 KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN---FSPVQMR-SELLVSRSGIK 360
K + G+H +NA AAA V G+ L ++ L++ SP +M S ++ +
Sbjct: 294 KVNLGICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFT 353
Query: 361 IVNDAYNANPISTRAAIDLLKDIACNGK----RVVILGDMLELGSTERESHEKILSYCCD 416
+++D++NANP S +A +D L N + R+ +LG MLELG ER HE++ SY
Sbjct: 354 LIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQ 413
Query: 417 ACIDLIGLVGDR 428
++ + VG R
Sbjct: 414 GGVNALIAVGSR 425
>gi|406027402|ref|YP_006726234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus buchneri CD034]
gi|405125891|gb|AFS00652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Lactobacillus buchneri CD034]
Length = 462
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 111/407 (27%), Positives = 200/407 (49%), Gaps = 19/407 (4%)
Query: 28 TINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
TI E+A+++N + + +C D+R + Q F + +H D H++I
Sbjct: 4 TIGEVAQAINANTENFDKAMLDESLTGVCFDSRKI--QTGQLFVPLVAEH-DGHDYIDNA 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+ G + ++ D+ + + + L + ++ Y + + + ++ VTGS
Sbjct: 61 IAGGASATLWA---SDHADRLPLTIPALVVDDPLTAFQQLSKYYLD-KINPRVIAVTGSN 116
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK MIA L S NV ++ N+NN +G+ +++ ++ + V EMGM G++
Sbjct: 117 GKTTTKDMIAAILSST-FNVTKTQDNFNNEIGLPYTILQMESNTEFLVAEMGMDRPGQLD 175
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN-- 259
L+++ARP++ V+ +G++H+E G+ + +A AK EI K V + D+PL+
Sbjct: 176 FLSKLARPDVAVITMIGEAHIEFFGTRDKIADAKMEITHGLKADGFFVYDGDEPLLTERA 235
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
V V K FG + DV A +G Q + E + F IP G + NA
Sbjct: 236 QQVDESVIKSTFGRKDSNDV--FATDSKDGQYQTQFHVNLWPE-IDFTIPMIGDYNVNNA 292
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA +V +F + + L+ F + R++ L G +I++D YN+NP + + +
Sbjct: 293 LAAISVGRIFRIYPQMMADKLAKFDLTKNRTQWLSGSKGERILSDVYNSNPTAAKEVLTA 352
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
K+ G+R+ +LGDMLELG+ + H + A I ++ L+G
Sbjct: 353 FKNTTTKGRRIAVLGDMLELGTQSKAMHASLADALDPASIRVVYLIG 399
>gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Hoeflea phototrophica DFL-43]
gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Hoeflea phototrophica DFL-43]
Length = 477
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 204/417 (48%), Gaps = 25/417 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
S +WT+ E+ E+++G+ L P G+ I D+R + + FFAI G FD H+F S
Sbjct: 2 SLLWTVQEMTEAMDGRPLGNLPDGVTGISIDSRTVG--EGDAFFAIKGDKFDGHDFASAA 59
Query: 82 LYGKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ + V+ + V + L++L ++ AR +R ++ +T
Sbjct: 60 IATGAALLVVAEAKLPALGRLTAPMIVVN-----DVLSALEDLGRAAR-ARSEAKIIAIT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+++K M+ ALE G V S ++NN GV L+L + + V E+GM+
Sbjct: 114 GSVGKTSSKEMLRRALEPSG-EVHASAASFNNHWGVPLTLARMPASAQYGVFEVGMNHPD 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP--- 255
EI L +M RP + ++ + +HL + +L ++A AK EI + +LN D+
Sbjct: 173 EIRPLVKMVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVVKNGHVLLNRDNEKFS 232
Query: 256 -LVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L + + + FG D RL+ ++ + + K+ +VK I +PG H
Sbjct: 233 WLKKRASELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARIGKDDVVVK--IGAPGRH 290
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPI 371
L NA A L G LA+ +L+ S + R EL + +++++YNANP
Sbjct: 291 LVQNALAVLGAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDESYNANPA 350
Query: 372 STRAAIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
S RAA++LL+D + G+R+ +LGDMLE+G H ++ A D++ L G
Sbjct: 351 SMRAALELLRDTPVRLRGRRIAVLGDMLEMGKFAERVHRELAEPVRQAHADMVCLSG 407
>gi|340616895|ref|YP_004735348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Zobellia galactanivorans]
gi|339731692|emb|CAZ94957.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Zobellia
galactanivorans]
Length = 435
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 197/393 (50%), Gaps = 22/393 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR + N FFA+ G +F+ + + + L VI + D+ + V+
Sbjct: 26 VCTDTRKIT--DNCIFFALKGDNFNGNRYANEALKKGAAYAVIDDAEFAESDRH-ILVD- 81
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL +L +A + R S ++ +TGS GK+TTK +I L S N + GN
Sbjct: 82 ----DTLKALQELAAFHR-SHSKAKVIALTGSNGKTTTKELINAVL-SQKYNTIATQGNL 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ I +IA++EMG + + EI L +A+P+ + N G +HLE GS
Sbjct: 136 NNHIGVPLTLLSIKEDTEIAIVEMGANHQKEIEFLCGLAQPDFGYITNFGKAHLEGFGSE 195
Query: 229 EDVARAKGEIFQE-SKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
V + K E++ +K +N DDP+ + ++K F D +V A
Sbjct: 196 AGVIKGKSELYDFLTKNNKHVFMNGDDPVQIE-KLGHYIKKYGFSTNNK-DYYMVELTAA 253
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
+ + + + ++ + +I S N AA + F VSLAQ+ ++ ++P
Sbjct: 254 DPFVKISI---EDTSITSQLIGSYNF---TNCAAAILIGKYFNVSLAQIKSAIEGYAPNN 307
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
RS++L +++G +I+ DAYNANP S +AA++ + N K + LGDM ELG+T E H
Sbjct: 308 NRSQIL-TKNGHRIILDAYNANPTSMKAALENFAQMPGNNK-IAFLGDMFELGTTAPEEH 365
Query: 408 EKILSYCCDACIDLIGLVGDRVV-VQCKWRKWS 439
+ I + + LVG+ ++K+S
Sbjct: 366 QAIADLAHKLNFENVILVGENFYGTDTLFQKYS 398
>gi|426401666|ref|YP_007020638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Candidatus Endolissoclinum patella L2]
gi|425858334|gb|AFX99370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
protein [Candidatus Endolissoclinum patella L2]
Length = 464
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 210/415 (50%), Gaps = 25/415 (6%)
Query: 24 SPIWTINEIAESVNGKIL--KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ +WT E+ G+I+ W GI +I F A+ G+ D H+F+
Sbjct: 2 TALWTRTAAVEATKGQIVGDNWSAYGISIDSRKI---KTGDIFIALPGKRVDGHQFVISA 58
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
L G + + + N D + + + L +L ++A +AR +R + +V VTGSV
Sbjct: 59 L-NLGASAALVSHIPNGLDNAPLLIVKD----VLKALKDLAHFAR-ARSNARIVAVTGSV 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+ TK M+A L + G + S GN NN +G +SL + D AV E+GM+ EI
Sbjct: 113 GKTGTKEMLARTLGADGKTI-ASVGNLNNHIGAPMSLASLPADCDFAVFELGMNHSNEIR 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA+M P + ++ NV H E S+ED+A +K EI + G + VLNAD+ L
Sbjct: 172 PLAQMIAPHVTIITNVELVHTEFFNSIEDIADSKAEIMEGLLPGGIAVLNADNSSFVRLR 231
Query: 262 VPRGV----RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
+ FG CD+R + + + G +V+ + + + + GLH +
Sbjct: 232 KRAQALCIDQIATFGRGAACDIRGIKIEPFSD--GTKVIASVAGKEISWTVGCIGLHWGL 289
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMR-SELLVSR--SGIK-IVNDAYNANPIST 373
N+ AV G+S+ + LS FSP++ R ++++++ +GI +++++Y+A+P S
Sbjct: 290 NSLGVIAVLHALGLSIIPLLKQLSVFSPLRGRGNQVMITTIDNGIALLIDESYSASPKSM 349
Query: 374 RAAIDLLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
RAA+ + A GKR +V+LGDMLELG+ +H + + D +LI L GD
Sbjct: 350 RAALSVFA--ATRGKRKIVVLGDMLELGNITSIAHANLKNTIDDIKPELIYLCGD 402
>gi|90423693|ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Rhodopseudomonas palustris BisB18]
gi|90105707|gb|ABD87744.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodopseudomonas palustris BisB18]
Length = 479
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 200/414 (48%), Gaps = 24/414 (5%)
Query: 22 SNSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
S P+WT + +AE++ P I I D+R L P +FAI G+ D H F++
Sbjct: 2 SKLPLWTASAMAEAMRATPSGALPDAIFGISIDSRTLIPG--DAYFAIRGEVHDGHAFVA 59
Query: 80 PELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGV 137
L + V+ + + D + V+ + L +LV+++ +R +R ++ +
Sbjct: 60 AALNAGAGLAVVERAQRDKFPADAPLLLVD-----DVLAALVDLSRASR-ARLGAKVIAI 113
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK++TK + + G S ++NN GV LSL + AV E+GM+
Sbjct: 114 TGSVGKTSTKEALRAVFGAQG-ETHASVASFNNHWGVPLSLARCPASAKFAVFEIGMNHP 172
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L + RP + ++ V HLE S+E +A AK EIF + VLN D+P
Sbjct: 173 GEIQPLVALVRPHVAIITTVEPVHLEFFDSVEAIADAKAEIFTGLEPNGAVVLNRDNPQF 232
Query: 258 ANL---TVPRGV-RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGL 313
A L G+ R V FG D RL+ + V+ + E K I PG
Sbjct: 233 ARLRKRAKAHGISRIVSFGADEKADARLLDIALQPECSAVRAAVFGEDVTYKLGI--PGR 290
Query: 314 HLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANP 370
H+AIN+ A A A L G LA ++LS P +R LLV+ +++++YNANP
Sbjct: 291 HMAINSLAVLAAAELVGADLALAALTLSQVQPAAGRGVRHTLLVAHGEATLIDESYNANP 350
Query: 371 ISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
S AAI++L A G+R+ +LGDMLELG + H ++ ID +
Sbjct: 351 ASMAAAINVLGQAAVGPQGRRIAVLGDMLELGPRGPQLHRGLVEAIKANAIDTV 404
>gi|442770731|gb|AGC71438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
[uncultured bacterium A1Q1_fos_1070]
Length = 1025
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 210/422 (49%), Gaps = 41/422 (9%)
Query: 35 SVNGKILKWGPP--GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI- 91
+ G++++ P + D+R + P F A+ G+ D H+FI+ + G GC GV+
Sbjct: 549 ATGGRLVRGSPHRFSAVTIDSRSVTPGC--LFVAVRGERLDGHQFIAQAVAG-GCGGVLI 605
Query: 92 -GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVL------VGVTGSVGKS 144
+++ D V V + +++V + AR R + + + VTGS GK+
Sbjct: 606 ERDKLHTVPDNPSVAV-----IEVADTIVALGQLARAHREAPEIAAKLRVIAVTGSSGKT 660
Query: 145 TTKSMIALALE---SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
+TK +IA S + ++ GN NN +GV L+L+ + + AV+E+GMS +GEI
Sbjct: 661 STKDLIAAVFSAHVSDASELLKTDGNLNNHLGVPLTLLRLRPGMRYAVVELGMSARGEIA 720
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261
LA +ARP++ V+ NVG +HLE+LGSLE++A AKGE+F G V LV +
Sbjct: 721 YLASLARPDVGVITNVGPAHLETLGSLENIAAAKGELFAAMADGTTTVFLDGHKLVRD-- 778
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQV-------------ANGGLGVQVVL--EKEREMVKF 306
+ R R + + A+ GL +Q+ + + +
Sbjct: 779 --QAARAGALTGRLKAVIAASGSSSAASASVWVELRGEASDGLDLQLSMLAAQAKTTHAL 836
Query: 307 VIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAY 366
+P G H A NA AAA A V A + L+ P + R + L++ G I++D Y
Sbjct: 837 RLPLIGPHQADNAALAAAAALALDVPPATIVQGLAKVQPGKHRGQ-LITLGGRIILDDCY 895
Query: 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
NANP ST+AA+ L+ + +G+ V +LGDMLELG TE E H ++ +D + +G
Sbjct: 896 NANPASTQAALRTLQGLRKSGRAVAVLGDMLELGPTEAELHAQVGRAAAQLGMDRLITIG 955
Query: 427 DR 428
R
Sbjct: 956 QR 957
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 151/376 (40%), Gaps = 44/376 (11%)
Query: 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV 106
G + D+R + P F A+ GQ D H FI+ +G I QV + + V
Sbjct: 32 GEVRDDSRQVQPGD--LFVAVPGQTVDGHHFIT-SAAQRGARAAIVEQVHPDCPLLQIPV 88
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVGKSTTKSMIALALES-------LG 158
E N N+L +A + + L+G+TG+ GK+T+ ++ LE +G
Sbjct: 89 E-----NATNALAQLAMNQQGRPSDSITLIGITGTNGKTTSNFLVETLLEEADLRPGLIG 143
Query: 159 VNVFQSYG-NWNNRVGVALSLIGIDRAVDIAVLEMG-----MSGKGEILELARMARPEIR 212
+++ G N + +L+ ++A E G M L L R+ R
Sbjct: 144 TVLYRGPGVNRSAPFTTPTALLLHRTLAEMA--EHGAKAVTMEVSSHALALGRLYGVRFR 201
Query: 213 VV--LNVGDSHLESLGSLEDVARAKGEIFQESKL----GDVCVLNADD----PLVANLTV 262
V N+ HL+ G+++D AK +F E L G V+N DD L A L
Sbjct: 202 VAAFTNLTQDHLDLHGTMDDYFAAKCRLFTEHLLPAERGGRAVINLDDEWGRKLFALLPP 261
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
+++ F DV +++ + G G+ VL+ V P G N +
Sbjct: 262 ---AQRIGFSLDGPADVSVLSEK--TGVEGITAVLKTPVGEVTLRSPLTGRFNLSNLALS 316
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
+ G+S Q+G LS S V R E + SR G ++ D Y P + + LK
Sbjct: 317 VGIGVALGLSATQIGRGLSRLSGVPGRLERVPSRRGPTVLVD-YAHTPDALYRVLSTLKQ 375
Query: 383 IACNGKR----VVILG 394
+ R +V+ G
Sbjct: 376 LTAAAPRRSRLIVVFG 391
>gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum JDM301]
gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum JDM301]
Length = 483
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 208/417 (49%), Gaps = 27/417 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ EIA++V+G+++ T D+R P F AI G+ D H+F++
Sbjct: 5 SVEEIAKAVDGRLIGDADSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAKTAE 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVTGS 140
V ++ ++V ++ G Q+ V+ L L R + F ++G+TGS
Sbjct: 63 QGATVAIVDHEVESD---GLPQIVVKDTVDALGELARHNIVRRRELDGDFD--IIGLTGS 117
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S GEI
Sbjct: 118 VGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEI 176
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V +
Sbjct: 177 ARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPM 236
Query: 261 TVPRGVRKVFFGW--RRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
++FG + +VR + +++ + + PG H +N
Sbjct: 237 AGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMN 296
Query: 319 ACAAAAVATLFGV---SLAQVGISLSNFSPVQMRSELLVSRSG--IKIVNDAYNANPIST 373
A AAA VA +G+ ++A++ S SP +M + V+R G +++D++NANP S
Sbjct: 297 ALAAATVAMRYGMAPETVARILASQHTISPHRM-ALSTVNREGTSFTLIDDSFNANPDSM 355
Query: 374 RAAIDLLKDIACN-GK---RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+A ++ LK N GK RV +LG MLELG+ E H I +Y + ID I VG
Sbjct: 356 KAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTSIGTYAAELGIDAIIAVG 412
>gi|418407091|ref|ZP_12980409.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Agrobacterium tumefaciens 5A]
gi|358006235|gb|EHJ98559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Agrobacterium tumefaciens 5A]
Length = 477
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 200/416 (48%), Gaps = 25/416 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT+ ++ G+ + P GI I D+R + + FFAI G D H++ S +
Sbjct: 4 LWTVADMIAITAGRPVGNLPTGITGISIDSRTV--KAGEAFFAIKGDRVDGHDYTSFAVA 61
Query: 84 -GKGCVGVIGNQV--CNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G G + V ++ + VE + L +L +A AR R + ++ VTGS
Sbjct: 62 NGAGLLVVAEGKLPALGRLTVPMIVVE-----DVLAALGKLAIAARE-RTTARIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ AL G V + ++NN GV L+L + + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRQALAPSG-RVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +M RP + ++ + +HL + ++E++A AK EIF+ + G +LN D+ L
Sbjct: 175 RPLVKMVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEGLEEGGFVILNRDNAQFEQL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+G+ + FG D RL + + G + +L E + + PG H+A
Sbjct: 235 EEAAQDQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNV--PGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA A + G +L + L V+ R L + +++++YNANP S
Sbjct: 293 DNAMAVLGAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNANPASM 352
Query: 374 RAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
RAAI +L + G+RV +LGDMLE+G + HE++ I+ + L G+
Sbjct: 353 RAAIAVLAETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWLAGE 408
>gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
27678]
gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
27678]
Length = 493
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 217/424 (51%), Gaps = 34/424 (8%)
Query: 29 INEIAESVNGKILKWGPPGI---------ICTDTRILAPNKNQWFFAITGQHFDAHEFIS 79
+ EI ++V+G+++ GI C+D+R + + F AI G+ D H+F+S
Sbjct: 6 LAEIEQAVHGRLVT--AEGISSNGAMATSACSDSRQV--REGSVFVAIAGERVDGHDFVS 61
Query: 80 PELYGKGCVG-VIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG-VLVGV 137
++ +G V ++ ++V D G Q+ + V L L R + S ++G+
Sbjct: 62 -KVGAQGAVAALVDHEVA---DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVIGI 117
Query: 138 TGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGK 197
TGSVGK+TTK ++A L ++G V G++NN +G+ L+ + ++ V EMG +
Sbjct: 118 TGSVGKTTTKDLMASLLSAMGETV-APVGSFNNEIGLPLTALKVNAGTRFLVAEMGANHV 176
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI L + P+I VVL VG +HL GS E +A+AK EI + G V VLNA+D V
Sbjct: 177 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEHV 236
Query: 258 ANLTVPRGVRKVFFG--WRRGCDVRLVAAQVANGGLGVQVVLE---KEREMVKFVIPSPG 312
A ++ ++FG RR D R+VAA+ E E E K + G
Sbjct: 237 AAMSGIAPGEVLWFGLPQRRTPD-RMVAAENVRCDELDHPSFELRDAEGECAKVNLGICG 295
Query: 313 LHLAINACAAAAVATLFGVSLAQVGISLSN---FSPVQMR-SELLVSRSGIKIVNDAYNA 368
+H +NA AAA V G+ L ++ L++ SP +M S ++ + +++D++NA
Sbjct: 296 MHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNA 355
Query: 369 NPISTRAAIDLLKDIACNGK----RVVILGDMLELGSTERESHEKILSYCCDACIDLIGL 424
NP S +A +D L N + R+ +LG MLELG ER HE++ SY ++ +
Sbjct: 356 NPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVNALIA 415
Query: 425 VGDR 428
VG R
Sbjct: 416 VGSR 419
>gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
proteobacterium HTCC2143]
gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
proteobacterium HTCC2143]
Length = 452
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 200/402 (49%), Gaps = 19/402 (4%)
Query: 29 INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCV 88
+++IA G++ +CTDTR ++P F A+ G H+D ++F+S +
Sbjct: 7 LSDIARETGGQLFGEASFSNVCTDTRSVSPG--DLFVALAGDHYDGNQFVSDAVIAGAVA 64
Query: 89 GVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
+ V V+V+ +T +L +A R RFSG +V +TGS GK+TTK
Sbjct: 65 AITSEAVTAAIPS--VKVD-----DTRFALGQIARLNRR-RFSGPVVALTGSAGKTTTKE 116
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
M+A L G V + N+NN +GV L+L+ ID + AV+EMG S G+I L + A
Sbjct: 117 MVARILCERG-EVLATEANFNNEIGVPLTLLAIDPSHQFAVVEMGASHIGDIAYLTQFAE 175
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK 268
P I V+ N H+E GS+E VA+ KGEIF+ G V ++N D+P G
Sbjct: 176 PTIAVLTNAMAVHIEGFGSIEAVAKTKGEIFENLPEGGVAIINQDEPFFQQWLQQAGKAS 235
Query: 269 VFFGWRRGCDVRLVAAQV---ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
V + A+ + N ++ L ++ +K + G H +NA AAAA
Sbjct: 236 VVTFSKYDTSANYYASNIHIQTNASTVFELHLAQQTITIKLAL--LGEHNVLNAVAAAAA 293
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
A G ++ V L + PV R + + S +++D YNA+P S AAID+L +
Sbjct: 294 AMTAGATVDDVKKGLESVRPVDGRLK-ASADSNRTVIDDTYNASPGSVMAAIDVLSGFS- 351
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
G+R +ILG M ELG +SH + SY I+ + +VG+
Sbjct: 352 -GRRCLILGTMAELGGLAEKSHRDVASYARHKGIEELLVVGE 392
>gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermobifida fusca YX]
gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Thermobifida fusca YX]
Length = 470
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 196/423 (46%), Gaps = 42/423 (9%)
Query: 27 WTINEIAESVNGKILKWGPP-----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
T++ IA+ ++ P G + D+R AP F A+ G D H+F
Sbjct: 4 LTLDRIAKITRSRLRGSAQPTDTVDGPVVIDSREAAPGS--LFVALRGSRVDGHDFAEAA 61
Query: 82 LYGKGCVGVIGNQVCNN-WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ G V+ C+ D + V+G + + + +GVTGS
Sbjct: 62 VRA-GATAVL----CSRPVDAPHLLVDGGDDAVVAALAKLARAVVAELPDADI-IGVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK ++A L+ +G V G++NN +G L+++ D+ LE+ G G I
Sbjct: 116 SGKTTTKDLLAQTLQRIGPTVAPP-GSFNNEIGHPLTVLRADQTTRFIALEVAARGVGHI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ---ESKLGDVCVLNADDPLV 257
L ++A P I VVLNVG +H+ GS + +A+AKGE+ + + G V VLNADD V
Sbjct: 175 AHLCQIAPPRIGVVLNVGSAHMGEFGSRDTIAQAKGELVEALPAAAQGGVAVLNADDDAV 234
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIP-----SP- 311
+ R V +G DVR A G + L+ ER +F + +P
Sbjct: 235 IGMASRTAARVVSYGLAPDADVR------AEG-----IALD-ERGRPRFTLAIGEDTAPV 282
Query: 312 -----GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM-RSELLVSRSGIKIVNDA 365
G H NA A AAV G + + +LS PV R E+ G+ IVNDA
Sbjct: 283 SLRLVGTHQVHNALAVAAVLRELGEPVTAIAAALSEAGPVSRWRMEVTERPDGVTIVNDA 342
Query: 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425
YNANP S AA+ L +A + +LG M ELGS R HE+I ++ +D++ V
Sbjct: 343 YNANPESMSAALRTLATLASGRRAFAVLGHMAELGSAHRTEHERIGRLVTESGVDVLITV 402
Query: 426 GDR 428
G++
Sbjct: 403 GEQ 405
>gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
Length = 444
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 192/384 (50%), Gaps = 25/384 (6%)
Query: 48 IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVE 107
++ TDTR + +N FFA+ G+ F+ + F + E KG V+ ++ N D + V+
Sbjct: 30 LVTTDTRKIT--QNAIFFALKGEKFNGNLF-AKEALDKGASIVVVDEPQNLQDDRIILVK 86
Query: 108 GNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
N L SL +A R S ++G+TGS GK+T+K +IA L+ V + GN
Sbjct: 87 -----NGLESLQALARAYR-STLRIPVIGLTGSNGKTTSKELIAAVLQE-KFQVHYTQGN 139
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L+ I IAV+EMG + EI L+ +A+P++ V N G +HLE G
Sbjct: 140 LNNHIGVPLTLLSIPENAQIAVIEMGANHLKEIELLSSIAQPDLGYVTNFGHAHLEGFGG 199
Query: 228 LEDVARAKGEIFQE-SKLGDVCVLNADDPLVANLTVPRGVR-KVFFGWRRGCDVRLVAAQ 285
E V + K E++ + ++NADDPL L + V ++ F
Sbjct: 200 FEGVVKGKSELYNFLHEHHKTVLINADDPL--QLQQAKAVESQISFSKNESTQATYCIEL 257
Query: 286 VANGGLGVQVVLEKEREMVKFVIPS--PGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
N +QVV+E VI S G + N AA + FG+S ++ + N+
Sbjct: 258 KENVNNKIQVVVE------DVVIRSNLTGNYNWSNVAAAISFGKHFGLSPKEIKNGIENY 311
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
P RS+ L+ + ++ DAYNANP S A+++ +G + VILGDM ELG +
Sbjct: 312 YPANHRSQ-LIQKDKYTLLMDAYNANPSSMEASLNNFS--TFDGSKTVILGDMFELGESS 368
Query: 404 RESHEKILSYCCDACIDLIGLVGD 427
+ +H+KI D + I LVG+
Sbjct: 369 KVNHQKIAQLTKDLGFEKIYLVGN 392
>gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus stomatis DSM 17678]
gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Peptostreptococcus stomatis DSM 17678]
Length = 469
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 127/396 (32%), Positives = 202/396 (51%), Gaps = 27/396 (6%)
Query: 29 INEIAESVNGKILKWGPPG----IICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ E+ ++ G+++ G G I D+R+ P F AI G+ D H F+ +
Sbjct: 6 VEEVVQATQGQLVCQGMDGGEITNIVIDSRLAGPGA--MFVAIVGESTDGHIFLES-AHQ 62
Query: 85 KGC-VGVIGNQ--VCNNW-DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+GC ++ N+ + + + D V+V+ NT L +A Y R+ F VG+TGS
Sbjct: 63 EGCRFFLVSNESYITDRFKDSTLVKVD-----NTEIGLGLIAKYYRD-MFDIPFVGITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TT+ M+ L S N ++ N+NN+ GV L+L ++ AV+EMGMSG GEI
Sbjct: 117 VGKTTTRDMVYSVLAS-KFNTIKNEKNYNNQFGVPLTLFRLEPGHQCAVIEMGMSGFGEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP-LVAN 259
LA + RP+I ++ N+G SH+E LGS E + +AK EI ++N DD L
Sbjct: 176 EYLANIVRPKIGIITNIGMSHIEHLGSQEGIFKAKMEITSGFDQTSSLIINGDDSYLRTE 235
Query: 260 LTVPRGVR----KVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L R + KV+ FG D+ + +V + + E E +F IP G H
Sbjct: 236 LERYRNSQKDSYKVYSFGMELQNDLCCKSQEVVDRD-KTRFTCSFEDETYEFTIPCLGEH 294
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR 374
NA AA + G+++ ++ L +F + R + ++ ++ND YNA+P S
Sbjct: 295 NVRNAMAAILAGHITGMTMEEISKGLLDFVATENRQD-IIKTDRFTLINDVYNASPDSMI 353
Query: 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410
AA+ +LK + + +RV ILGD LE+G E H ++
Sbjct: 354 AALKVLK-LYKDRRRVAILGDCLEMGQYAEEGHRRV 388
>gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
gi|169291945|gb|EDS74078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium spiroforme DSM 1552]
Length = 450
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 115/401 (28%), Positives = 205/401 (51%), Gaps = 19/401 (4%)
Query: 29 INEIAESVNGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
++EI E+ GK++ I D+R ++P + I G+ FD H+FI +
Sbjct: 3 VSEIVEATGGKLICGNSNQEITGFSQDSRKVSPG--MMYIPIIGERFDGHDFI-KNAFEN 59
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G VI + ++ + ++V+ +TL +L +MA Y R R V VG+TGSVGK++
Sbjct: 60 GASAVISGRDIDDSEHIIIKVK-----DTLKALQDMAHYLRKHRKVKV-VGITGSVGKTS 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
T+ M+ ++ ++ GN+NN +G+ L+++ + + + VLEMGM+ E+ EL+
Sbjct: 114 TRDMVYSVIKQ-QYKTLKTEGNYNNAIGLPLTILRL-KDEQVMVLEMGMNHLKEMEELSM 171
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+A P+I + NVG +H+ LGS E++ +AK EI + V+N D+ +++ + V R
Sbjct: 172 IACPDISAITNVGTAHIGELGSRENILKAKMEIINGMSDNSMLVINNDNDMLSTVEVGR- 230
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
+ + G G D + A V G E + ++ +P PG H +NA A A+
Sbjct: 231 LNLIRVGIDNGVDFK--ANNVVLSDEGSTFNFEYKGKVYFVDVPVPGKHFVMNALIAIAI 288
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
+S Q + F + R +++ ++ I +++ YNA+ S +++ID+L
Sbjct: 289 GLQLDISPEQCIKGVKEFELTRNRMDIVELKNNITLIDGTYNASEDSMKSSIDVLA--TY 346
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+++ +L DMLELG + H I Y ID++ VG
Sbjct: 347 TRRKIAVLADMLELGKYSEQLHRNIGMYVAKNKIDILVAVG 387
>gi|363899129|ref|ZP_09325640.1| hypothetical protein HMPREF9625_00300 [Oribacterium sp. ACB1]
gi|395209499|ref|ZP_10398593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oribacterium sp. ACB8]
gi|361959459|gb|EHL12746.1| hypothetical protein HMPREF9625_00300 [Oribacterium sp. ACB1]
gi|394705130|gb|EJF12659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oribacterium sp. ACB8]
Length = 429
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 33/370 (8%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
F + G+ DAH FI P G V+ + K + V+ +TL +L
Sbjct: 27 FVPLKGEKVDAHRFI-PMAIEHGAKHVLTAENSAKLQKKYPDVQFYSVEDTLEALQAFGA 85
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
+ R ++ G L+GVTGSVGK+TT+ MIA AL S VFQ+ GN N++VGV ++L + +
Sbjct: 86 FCRR-KYKGTLIGVTGSVGKTTTREMIAAALSS-EKKVFQTKGNANSQVGVPITLFDMAK 143
Query: 184 A-VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
A +I+V+EMG+S GE+ LARM ++ V N+GD+HLE++ + E+ K I
Sbjct: 144 AKQEISVIEMGVSIPGEMERLARMCSVDMAVFTNIGDAHLENMQTKENTCFEKMHIL--- 200
Query: 243 KLGD----VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+GD L DP+++ LT R ++ + F +R + E
Sbjct: 201 -MGDPGRVELYLPKKDPILSQLTEER-IQDMGFLGKRALSL---------------FFYE 243
Query: 299 KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG 358
KE + + PG H+ NA A ++ G+S ++ FS + R E ++++ G
Sbjct: 244 KE----ELPLSVPGEHMKENAGIALLLSKRLGISEKVAEKAVCAFSGLPGRGEKILTKDG 299
Query: 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDAC 418
I I++D+YNA+P S +AA+ +L + +RV +LGDM ELG E H +I
Sbjct: 300 ILILDDSYNASPDSMKAALKVLSE-EKGTRRVAVLGDMNELGKEELLRHREIGEVMRGLS 358
Query: 419 IDLIGLVGDR 428
ID + +G++
Sbjct: 359 IDCLFTLGEK 368
>gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
15897]
gi|224525303|gb|EEF94408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Catenibacterium mitsuokai DSM 15897]
Length = 447
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 202/401 (50%), Gaps = 21/401 (5%)
Query: 29 INEIAESVNGKILKWGPPGII---CTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I EI E+ NGK+L + DTR++ P + + G D H++I P+ + K
Sbjct: 3 IREIIEATNGKLLSGHLDDQVNGFTQDTRVIQPG--NLYIPLVGIK-DGHDYI-PQAFNK 58
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G + N+ + + VE +T+ +L ++A Y R + V +G+TGS GK++
Sbjct: 59 GAAATLTNRPIEDDSHNVILVE-----DTMKALGDLARYVRVHSHAKV-IGITGSAGKTS 112
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
TK MIA + S ++ GN+NN +G+ L+++ + ++ V+EMGM+ EI L +
Sbjct: 113 TKDMIASVI-SQQYTTLKTQGNFNNNIGLPLTILRYN-GEEVMVIEMGMNHLEEIDYLTK 170
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+A P+I + N+G +H+ LGS E++ +AK EI G V+N D+ L++ + P G
Sbjct: 171 IALPDIAAITNIGTAHIGELGSRENILQAKMEIVHGMNHG-TLVVNNDNDLLSTVH-PEG 228
Query: 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAV 325
+ G D++ + +V + + V+ + PG+H NA A +
Sbjct: 229 ISLKTIGIESDADLKATDIILNEDMSSFRVKVNGQDYAVRVYV--PGVHFIFNALIAIQI 286
Query: 326 ATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
L + + + + F + R+++L I++++ YNAN S +++ID+L
Sbjct: 287 GLLLDIPMEKCIRGIETFELTKNRNDILTLDRHIRVIDGTYNANLDSMKSSIDVLS--GY 344
Query: 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+++ +LGDMLELG E H + ++ IDLI VG
Sbjct: 345 TDRKIAVLGDMLELGDYEETLHRAVGAHLLKKNIDLILTVG 385
>gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 450
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 205/403 (50%), Gaps = 27/403 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICT-DTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+W ++EIAE+++ I + +I + + KN F + G FD H+FI E
Sbjct: 3 LW-LSEIAETLHTNIENFRDDVLIESFSINSKSIGKNTLFIPLKGNKFDGHDFIQ-EAIS 60
Query: 85 KGCVGVIGNQVCNNWDK-GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+G + I + N +++VE +TL ++ +A R R +++G+TGSVGK
Sbjct: 61 RGAISFITQKDVNTEKSCPYLKVE-----DTLKAMQILAKAYREKRKDLIVIGITGSVGK 115
Query: 144 STTKSMIALALESLGVNVFQSY---GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
+TTK + L N F+SY GN+NN +G+ S++ I V +A LEMGMS GEI
Sbjct: 116 TTTKEYVFNVLS----NKFRSYKNEGNFNNHIGLPYSILNIPDEVKVATLEMGMSNFGEI 171
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD-VCVLNADDPLVAN 259
L+++A+P I ++ N+G +H+E+L + ++ AK EI Q+ D + ++N D+ ++ +
Sbjct: 172 SFLSKIAKPNIGIITNIGVAHIENLKTRYNIFLAKSEI-QDGMPNDGILIINNDNDILYS 230
Query: 260 LTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
+ V G D R Q + G V K+ I S H N+
Sbjct: 231 HRHELKRKVVTVGIENDADFRAKDIQKVDNGFFFVVSNH------KYFIESFNFHDIYNS 284
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
A AV + G+ + + ++ R E ++ + G+ +V+D+YNA+ S +AI+
Sbjct: 285 LFAIAVGEILGIEKEAIEKGILKKCGLRRRFE-VIKKDGLTVVDDSYNASTHSMMSAING 343
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+ +GK++++LGDMLELG + H K+ Y ID+I
Sbjct: 344 V--CGFSGKKILVLGDMLELGEFSEQEHRKVGKYIVSKPIDVI 384
>gi|354580848|ref|ZP_08999752.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus lactis 154]
gi|353201176|gb|EHB66629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Paenibacillus lactis 154]
Length = 456
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 189/372 (50%), Gaps = 32/372 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG------ 102
+ D+R + P F I + D H F++ E KG V ++ D
Sbjct: 30 VSIDSRTVKPG--NLFIPII-RELDGHNFVT-EAIAKGAVAAFWQ--TDHPDPPIHLPLI 83
Query: 103 FVQVEGNGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVGKSTTKSMIALALESLGVNV 161
FV + L SL +A R GV ++GVTGS GK+TTK M+ L++ ++V
Sbjct: 84 FVD-------DCLESLQKLAKAYRKEL--GVKIIGVTGSNGKTTTKEMLQSVLQT-KLSV 133
Query: 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221
+++ GN N++VGV L+++ I+R ++A++EMGMS +G I +L+++ P+I ++ +G +H
Sbjct: 134 YKTEGNLNSQVGVPLTILAINRDAEVAIIEMGMSERGHIDQLSKITEPDIAIITMIGVAH 193
Query: 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPR-GVRKVFFGWRRGCD 278
L SLGS E++A AK EI K G N DDPL+ + R + + FG + D
Sbjct: 194 LSSLGSKEEIAAAKLEILNGLKNGGCLFYNGDDPLLTTKLCNIQRESIETISFGQQHFND 253
Query: 279 VRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGI 338
+ + V +G + + K+ +P G H NA A A+A G S ++
Sbjct: 254 I--TSENVVINPVGSNFSVAND----KYYLPLLGGHNINNALATIAIALKMGFSSTEINE 307
Query: 339 SLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLE 398
MR E + S G ++NDA+NA+P S AAI +++ K+ +++GDMLE
Sbjct: 308 GFRTLKLPGMRMEKIDSSLGFTVINDAWNASPDSVSAAIKTFQELTGYRKKYLVIGDMLE 367
Query: 399 LGSTERESHEKI 410
LG E E H I
Sbjct: 368 LGEREEEYHRNI 379
>gi|425463472|ref|ZP_18842810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9809]
gi|389832466|emb|CCI23887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Microcystis aeruginosa PCC 9809]
Length = 450
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 218/420 (51%), Gaps = 52/420 (12%)
Query: 28 TINEIAESV----NGKILKWGPPGIIC---TDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++N++A+ + NG I + P ++ TD+R + Q F A+ G +F+ H+FI
Sbjct: 6 SLNQLAQLLSLQDNGDI-SFSPDSLVSGINTDSRSI--ESGQAFLALKGDNFNGHDFIDM 62
Query: 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNV------NTLNSLVNMACYARNSRFSGVL 134
+ KG +I +Q V V + N+ NTL + +A + RN +F+ +
Sbjct: 63 AIE-KGAATLIVDQP--------VSVNSSSNIPVFLVHNTLETYQQLAHWWRN-QFTIPV 112
Query: 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194
+ +TGSVGK+TTK +IA L + G V ++ N+NN +GV +L+ +D + AV+EMGM
Sbjct: 113 IAITGSVGKTTTKELIASVLATQG-KVHKTLANYNNEIGVPKTLLELDETHNSAVIEMGM 171
Query: 195 SGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD 254
G+GEI LA++ RP I V+ NVG +H+ LGS +A AK E+ ES + VLN D
Sbjct: 172 RGRGEIALLAQITRPTIAVITNVGTAHIGRLGSEAAIAEAKCELLAESPSSSIAVLNYDH 231
Query: 255 PLVANLTVPR--GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER-EMVKFVIPSP 311
PL+ T R + +G+ G D+ +G + L R + F +P
Sbjct: 232 PLLTE-TAKRVWQGETITYGF-SGGDI-----------VGELLDLTTLRVNGLDFNLPLS 278
Query: 312 GLHLAINACAAAAVATLFGV--SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369
G H A+N AA AVA + G+ + Q GI ++ S R +L + I ++++ YNA
Sbjct: 279 GRHHALNFMAALAVAKILGIDWTSLQEGIKVNLPSGRAKRYQL---ATDILLLDETYNAG 335
Query: 370 PISTRAAIDLLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACID-LIGLVGD 427
S AA+DLLK A G+R + +LG M ELGS + H ++ ID L LV D
Sbjct: 336 LESMLAALDLLK--ATPGQRHIAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDD 393
>gi|427730878|ref|YP_007077115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nostoc
sp. PCC 7524]
gi|427366797|gb|AFY49518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nostoc
sp. PCC 7524]
Length = 475
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/376 (34%), Positives = 197/376 (52%), Gaps = 30/376 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR++ P + F A+ G+ FD HEF++ G I V N++ + V
Sbjct: 60 IQTDTRLIKPG--EVFVALRGEKFDGHEFVA----TAIAQGAIAAIVDFNYENSTLPVLK 113
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
N TL + + + R+ RF ++GVTGSVGK+TTK +IA L + G V +++GN+
Sbjct: 114 VNN--TLEAYQKIGRWWRD-RFHIPVIGVTGSVGKTTTKELIAAVLGTQG-KVHKTFGNF 169
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ ++ D AV+EM M G+G+I EL ++A P I V+ NVG +H+E LGS
Sbjct: 170 NNEIGVPKTLLQLNAEHDYAVIEMAMRGRGQIAELTQIAHPTIGVITNVGTAHIELLGSE 229
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288
E +A AK E+ E V +LN D+PL+ R+V G D++ + + N
Sbjct: 230 EAIAEAKCELLAEMPQNSVAILNHDNPLLLTTAKKFWQREVLTYGFSGGDIQGIL--IDN 287
Query: 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348
+ E ++ +P PG H A N AA AVA + G+ SL + V M
Sbjct: 288 DTI--------EVAGIQLPLPLPGRHNATNFLAALAVAKVLGIDWT----SLRDGVTVNM 335
Query: 349 ---RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTER 404
RS+ + + I+++ YNA P + AA+ LL D GKR + +LG M ELG
Sbjct: 336 PTGRSQRFNLPNDVVILDETYNAAPEAMLAALQLLAD--TPGKRKIAVLGAMKELGERSP 393
Query: 405 ESHEKILSYCCDACID 420
+ H+++ D +D
Sbjct: 394 QLHQRVGETVRDLKLD 409
>gi|182677681|ref|YP_001831827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Beijerinckia indica subsp. indica ATCC 9039]
gi|182633564|gb|ACB94338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Beijerinckia indica subsp. indica ATCC 9039]
Length = 486
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 197/417 (47%), Gaps = 29/417 (6%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+P+ + + V+G + P I DTR L ++ FFAI G + D H+++
Sbjct: 17 TPLGLVTPLQARVSGHV-PLRPARGISIDTRTL--REDDLFFAIKGDNSDGHDYVPAAFA 73
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV----NTLNSLVNMACYARNSRFSGVLVGVTG 139
V+ + ++ +G + L +L + AR R +V VTG
Sbjct: 74 KGAMAAVVDEAHAD-------RLAAHGPLYVVHEVLPALERLGQAARR-RVEARVVAVTG 125
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK++TK + L L + G +V S ++NN GV L+L + R + E+GM+ GE
Sbjct: 126 SVGKTSTKEALRLVL-TQGGSVHASVASYNNHWGVPLTLARMPRDARFGIFEIGMNHPGE 184
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L M RP + ++ V HLE ++E +A AK EIF G V +++ D P
Sbjct: 185 ITPLVGMVRPHVAIITTVAPVHLEYFENVEAIADAKAEIFSGLVPGGVAIIHRDIPQFER 244
Query: 260 LT-----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L P G+ FG D RL+ ++ V+ ++ E + + + +PG H
Sbjct: 245 LAEAARHSPAGL-IASFGTHEKADARLLDLTPSSDHSMVKASIQG--ETLTYRLGAPGRH 301
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG---IKIVNDAYNANPI 371
A N+ A A GV L L+ +P R + LV +G ++++++YNANP
Sbjct: 302 FAENSLAVLLAAKACGVPLEDAAAVLAFCAPQAGRGQQLVLEAGDGPFRLIDESYNANPA 361
Query: 372 STRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
S RAA+++ + G+R+ ILGDMLELG + H ++ +AC DL+ G
Sbjct: 362 SMRAALEMAGTLPLEGVGRRIAILGDMLELGPQAPDLHAQLADILREACFDLVFAAG 418
>gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylotenera mobilis JLW8]
gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Methylotenera mobilis JLW8]
Length = 450
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 195/370 (52%), Gaps = 17/370 (4%)
Query: 62 QWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNM 121
Q F A+ G +FD + F + E G V+ + + V + T +L +
Sbjct: 36 QLFVALKGANFDGNAF-AQEALELGAAAVLVSDASVQAEPRIVVAD------TRLALGEL 88
Query: 122 ACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLG---VNVFQSYGNWNNRVGVALSL 178
A Y R +F+ +V VTGS GK+TTK M++ L + +V +YGN NN +GV L+L
Sbjct: 89 AKYWRQ-KFAMPVVAVTGSNGKTTTKEMLSAILSVVAGAKASVHATYGNLNNDIGVPLTL 147
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A AV+EMGM+ GEI L +A+P++ ++ N G +H+ LGS E++A+AKGEI
Sbjct: 148 LKMQPAHQYAVVEMGMNHLGEIDYLTHIAQPDVALINNAGIAHIGELGSRENIAKAKGEI 207
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRK-VFFGWRRGCDVRLVAAQVANGGLGVQVVL 297
F K V V+NAD RK V FG + DV A N G VVL
Sbjct: 208 FAGLKSDGVAVINADSDYAYYWKSLNPHRKIVTFGLKNPADVS--ARYQENDGY-ASVVL 264
Query: 298 EKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357
+ V + G H NA AA A A GVSL +G L++F+ V R E +
Sbjct: 265 ATASDEVSVQLNVQGEHNISNALAAGATAYALGVSLNDIGRGLASFTGVYGRLERKAGIN 324
Query: 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDA 417
G +++D YNANP S +AAI++L +A GK++++LGDM ELG+ + H ++ +Y A
Sbjct: 325 GAVVIDDTYNANPDSMKAAINVLAKLA--GKKILVLGDMGELGADAKSMHAEVGAYAKAA 382
Query: 418 CIDLIGLVGD 427
+ + +G+
Sbjct: 383 GLTTLYCLGN 392
>gi|399061134|ref|ZP_10745938.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Novosphingobium sp. AP12]
gi|398036235|gb|EJL29454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Novosphingobium sp. AP12]
Length = 493
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 195/419 (46%), Gaps = 29/419 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
+W IA +V G + D+R + P FFA+ G+ D H F+ + K
Sbjct: 22 LWDAVSIARAVKGTASADFTVSGVEIDSRDVQPG--DLFFALKGEAMDGHRFVE-MAFAK 78
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
G V+ V D + V +T+++L + AR R G ++GVTGSVGK+
Sbjct: 79 GAAAVV---VDRPVDGPHILV-----ADTMDALERLGAAAR-LRARGPVIGVTGSVGKTG 129
Query: 146 TKSMIALALE-SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
K MI AL+ S + +S ++NN VGV LSL + V EMGM+ GEI L
Sbjct: 130 VKEMIFAALDRSSRGDAHRSVKSYNNHVGVPLSLARMPGRARFGVFEMGMNHAGEIAALT 189
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL---T 261
R RP + V+ + +H+E LGS E +ARAK EIF+ + G V+ D P L
Sbjct: 190 RQVRPHVAVITTIAPAHIEMLGSEEAIARAKAEIFEGLEAGGTAVIPIDSPHYGALREAA 249
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+ G + V FG DVRL+ A GG G V ++ V + + +PG H IN+ A
Sbjct: 250 LACGAQVVAFGKAADADVRLLDTVAAIGG-GSLVTVDMGDRRVCYTVAAPGEHQVINSLA 308
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVS--------RSGIKIVNDAYNANP 370
A L G++L+ + R E+ V R +++++YNANP
Sbjct: 309 VMAAVRAVKGDLGAAGVALAEMGGMAGRGARVEIDVEGGEPDADGRRKALLIDESYNANP 368
Query: 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
S RA + L +R+ +LG M ELGS + H + + +D LVG+ +
Sbjct: 369 ASMRATLAQLGRAPAQ-RRIAVLGAMKELGSHGPDYHAALAGPIREVPVDYAVLVGEEM 426
>gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Saccharopolyspora erythraea NRRL 2338]
Length = 487
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 140/424 (33%), Positives = 205/424 (48%), Gaps = 31/424 (7%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ +IAE+V G++ + I+ D+R +AP F A+ G+ D H+F +
Sbjct: 5 SLADIAEAVGGRLHRADGSEIVSASVEFDSRKVAPGG--LFVAVPGERVDGHDFAA-RAV 61
Query: 84 GKGCVGVIGNQVCNN----------WDKGFVQVEGNGN---VNTLNSLVNMACYARNSRF 130
G GV+ + + G + + G+ + L +L +A Y +
Sbjct: 62 ADGAAGVLAAREVDAPAVIVPPVPAEATGLMALAGDTDGSGAAVLAALARLARYVVDRLP 121
Query: 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVL 190
+VGVTGS GK++TK +IA LE +G V G++NN +G + + D VL
Sbjct: 122 RLTVVGVTGSSGKTSTKDLIAQLLEPMGPTVAPP-GSFNNELGHPWTALRADEDTRHLVL 180
Query: 191 EMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVL 250
E+ G G I +L +A P I VLNVG +HL GS E VARAKGE+ + V VL
Sbjct: 181 ELSARGVGHIAKLCEVAPPRIGAVLNVGHAHLGEFGSQEAVARAKGELVESLPADGVAVL 240
Query: 251 NADDPLVANLTVPRGVRKVFFGWRRGCDVR---LVAAQVANGGLGVQVVLEKEREMVKFV 307
NADDPLVA + R V G G VR +V + A L + +
Sbjct: 241 NADDPLVAAMASRTRARVVLVGESPGAHVRAEDIVLDEQARPSF----TLVAPQGSAQVS 296
Query: 308 IPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS-ELLVSRSGIKIVNDAY 366
+P G H NA +AAA+A G +L QV LS V R E+ + G+ +VNDAY
Sbjct: 297 LPLHGEHHVGNALSAAAIALELGATLEQVADRLSGVRRVSARRMEVAETADGVTVVNDAY 356
Query: 367 NANPISTRAAIDLLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGL 424
NANP S RAA+ L + G+ +LG M ELG + ++H++I ID + +
Sbjct: 357 NANPESMRAALKTLASMTRGRPGRAWAVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVV 416
Query: 425 VGDR 428
VGD+
Sbjct: 417 VGDQ 420
>gi|379713632|ref|YP_005301970.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia massiliae str. AZT80]
gi|376334278|gb|AFB31510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
2,6-diaminopimelate--D-alanyl-D-alanyl ligase
[Rickettsia massiliae str. AZT80]
Length = 449
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 188/377 (49%), Gaps = 28/377 (7%)
Query: 60 KNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLV 119
K F A+ G D H+++ + +I +V N + V+ + +L
Sbjct: 34 KGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKYKIILVD-----DCFEALQ 87
Query: 120 NMACYAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
+A Y R NS+ + +TGSVGK++TK + + L+ + VF S GN+NN++G+ ++L
Sbjct: 88 KIALYKRENSK--AKFIAITGSVGKTSTKEALKVLLQHDFL-VFASRGNFNNKLGMLINL 144
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + A+ E+GM+ KGEI EL ++ +P I ++ N+ ++HL SLE++A AK EI
Sbjct: 145 ASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLAFFNSLEEIAEAKCEI 204
Query: 239 FQESKLGDVCVLNADD-------PLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291
F D+ V+NAD ++ NL++ FG L+ + L
Sbjct: 205 FANFSKNDIAVINADTNCYNKILSILKNLSITDIHS---FGRSSKTSAELILYE----NL 257
Query: 292 GVQVVLEKE--REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMR 349
G QV L+ + +++ IP H N + + G + L+N SP + R
Sbjct: 258 GEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGR 317
Query: 350 SELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEK 409
E +++ +++ D YNA+P S +AA++ LK + K +I GDMLELG + HEK
Sbjct: 318 GE-IINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAII-GDMLELGENSKRLHEK 375
Query: 410 ILSYCCDACIDLIGLVG 426
++ Y DA + LVG
Sbjct: 376 LVQYILDAACSKVYLVG 392
>gi|403385799|ref|ZP_10927856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kurthia
sp. JC30]
Length = 451
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 161/309 (52%), Gaps = 12/309 (3%)
Query: 125 ARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRA 184
A + + VTGS GK++TK +IA L+ V ++ GN+NN++G+ L+L+ +D
Sbjct: 95 AYRAEHKATFIAVTGSNGKTSTKDLIAGTLKPY-YKVQKTEGNYNNQLGLPLTLLSLDED 153
Query: 185 VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKL 244
AVLEMGM G G+I L +MA+P V+ N+G++H+E+LGS E +A+AK EI +
Sbjct: 154 TQFAVLEMGMDGFGQIELLTKMAKPHYAVITNIGEAHMEALGSREGIAKAKFEITMGLQA 213
Query: 245 GDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG----VQVVLEKE 300
+ D+PL+ L + + FG D L AA + G V +LE
Sbjct: 214 DGKFFYDGDEPLLTPLVEAANLNAISFGLEASDD--LYAANITETAAGSTFNVHGLLED- 270
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK 360
KF I G H N A +A G++ Q+ +L MR +L+ ++ +
Sbjct: 271 ----KFFISVLGRHQVKNTLIAILIAQDIGLTNDQIRAALKGVQLTNMRMQLVEGKNDVL 326
Query: 361 IVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
+NDAYNA P S RAA++ ++ + V+LGDMLELG+ ERE HE I I
Sbjct: 327 FINDAYNAAPTSVRAALNFVEHATMRQDKWVVLGDMLELGTLEREYHENIADDLNVEAIH 386
Query: 421 LIGLVGDRV 429
+ L G R+
Sbjct: 387 HVCLFGPRM 395
>gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna ACS-171-V-Col3]
gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna ACS-171-V-Col3]
Length = 454
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 193/388 (49%), Gaps = 20/388 (5%)
Query: 26 IWTINEIAESV-NGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ TI E+ ++ N K GI TDTR + K+ F A+ G +FD +I
Sbjct: 6 LKTITELTNTIINEKYHDIMVKGI-STDTRTIQ--KDNMFIALRGDNFDGQNYIEMAFEK 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
V+ N D ++V+ NT ++++A NS V + +TGS GK+
Sbjct: 63 GASCCVVNRDYRNINDYPVIEVD-----NTKEFMMDLARGYINSLKCKV-IAITGSNGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK +++ L+ V ++ N+NN +G++ ++ ID ++AVLEMG GEI +L
Sbjct: 117 TTKDIMSSLLKE-KYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLT 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A P+I ++ N+GDSHL +L + E++ARAK EI + K + +LN DD ++ +
Sbjct: 176 NIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDSILREVKQEY 235
Query: 265 GV--RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
+ + + FG + D R+ + G + + V F I G H NA +
Sbjct: 236 KLPEKTITFGIKPDSDYRMEMIKADETGSTFSI-----NDHV-FNIELLGHHQMYNATMS 289
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
VA L G+ + + L N MR+EL++ I+ND+Y +NP S + ++
Sbjct: 290 IIVAELMGLDYSDIAKGLKNIELTGMRNELIL-LDKFHILNDSYKSNPQSLTSCLETAYG 348
Query: 383 IACNGKRVVILGDMLELGSTERESHEKI 410
+ +++ +LGDMLELG E H+ I
Sbjct: 349 LHGYSRKIAVLGDMLELGDNEITLHKNI 376
>gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
subsp. infantis CCUG 52486]
Length = 480
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 210/419 (50%), Gaps = 31/419 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++ EIA++V+G+++ G G +D+R P F AI G+ D H+F++
Sbjct: 2 SVEEIAKAVDGRLI--GDAGSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAKT 57
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVT 138
V ++ ++V ++ G Q+ V+ L L R + F ++G+T
Sbjct: 58 AGQGATVAIVDHEVKSD---GLPQIVVKDTVDALGELARYNIVRRRELDGDFD--IIGLT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S G
Sbjct: 113 GSVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 172 EIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLTGGTAVLNADDEHVV 231
Query: 259 NLTVPRGVRKVFFGW--RRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+ ++FG + +VR + +++ + + PG H
Sbjct: 232 PMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNV 291
Query: 317 INACAAAAVATLFGV---SLAQVGISLSNFSPVQMRSELLVSRSG--IKIVNDAYNANPI 371
+NA AAA VA +G+ ++A++ S SP +M + V+R G +++D++NANP
Sbjct: 292 MNALAAATVAMRYGMAPETVARILASQHTISPHRM-ALSTVNREGTSFTLIDDSFNANPD 350
Query: 372 STRAAIDLLKDIACN-GK---RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
S +A ++ LK N GK RV +LG MLELG+ E H I +Y + ID I VG
Sbjct: 351 SMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVG 409
>gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acaryochloris marina MBIC11017]
gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Acaryochloris marina MBIC11017]
Length = 448
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 190/366 (51%), Gaps = 32/366 (8%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TDTR L P + F A +G++FD H F + +G + I + + V
Sbjct: 33 VNTDTRSLKPQE--IFLAFSGENFDGHRFAESAVQ-QGAIAAIVDHPIDAATPQLV---- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + + + R +F ++ +TGSVGK+TTK +I+ L + G +V ++ N+
Sbjct: 86 --VPDTLVAYQRLGQWWRQ-QFQIPIIAITGSVGKTTTKELISAVLGTAG-SVLKTEANY 141
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+G+ D AV+EMGM G GEI EL+++A+P I V+ NVG +H+ LGS
Sbjct: 142 NNEIGVPKTLLGLTADHDYAVVEMGMRGPGEIAELSQIAQPTIGVITNVGTAHIGRLGSR 201
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVPRGVRKVFFGWRRGCDVRLVAAQV 286
E +A+AK E+ + + VLNAD+ L+ TV G + + G D + Q+
Sbjct: 202 EAIAQAKCELLAQMPAESLAVLNADNSLLIETAQTVWSGAQVTY-----GLDSGDLQGQL 256
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLA--QVGISLSNFS 344
A+ L V F +P PG H A+N AA A+A + LA Q GISL S
Sbjct: 257 ADQTLQV--------ADHSFPLPLPGAHNALNYLAALAIAQHLHLDLAPLQQGISLELPS 308
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
R+ L + + ++++ YNA S +AA+ LL +R+ +LG M ELG
Sbjct: 309 ---GRARKLTLPNDVVVLDETYNAGLESMQAALHLLAQTPGE-RRIAVLGPMKELGEYAA 364
Query: 405 ESHEKI 410
E H ++
Sbjct: 365 ELHRQV 370
>gi|55540740|gb|AAV52896.1| MurF [Flavobacterium columnare]
Length = 415
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 189/368 (51%), Gaps = 28/368 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR ++PN F A+ G +++A+EF + E KG + VI + DK + E
Sbjct: 16 VCTDTRKISPN--SLFIALKGDNYNANEF-AQEALNKGALFVIID------DKKYYTDEN 66
Query: 109 NGNV--NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ N+L +L +A Y RN + ++ +TGS GK+TTK +I + L S + G
Sbjct: 67 KMLLVNNSLQALQELANYHRN-QLGLPIIALTGSNGKTTTKELINVVL-SKKYKTIATIG 124
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ I DIA++EMG + + EI L + P+ + N G +HLE G
Sbjct: 125 NLNNHIGVPLTLLSIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNFGKAHLEGFG 184
Query: 227 SLEDVARAKGEIFQESKLGD-VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
+E V + K E++ K + +N DD + T + + + F ++ +
Sbjct: 185 GIEGVIKGKSEMYTYLKTHNKTAFVNLDDSIQEEKT--QHINRYTFSTDNNKKANIIINK 242
Query: 286 V-ANGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+ AN + ++ +E + ++ G++ + N A ++ T F VS + ++ N+
Sbjct: 243 IEANPFVKIKYNGIEIQSNLI-------GIYNSNNINVAISIGTYFNVSEQDIKQAIENY 295
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
P RS+ L+ + KI+ DAYNANP S AAI + + +G ++ LGDM ELG
Sbjct: 296 IPANNRSQ-LIEKGNNKIILDAYNANPSSMAAAISNFQQL--DGSKIAFLGDMFELGEES 352
Query: 404 RESHEKIL 411
H+KI+
Sbjct: 353 LTEHKKII 360
>gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium symbiosum WAL-14673]
gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Clostridium symbiosum WAL-14673]
Length = 455
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/398 (32%), Positives = 204/398 (51%), Gaps = 19/398 (4%)
Query: 29 INEIAESVNGKIL---KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
I +I E+VNG++L I D+R + + F + G+ DAH F+S + +
Sbjct: 6 IRDIVEAVNGRLLCGDMETSLRHISIDSRTM--KGDDLFVPLIGEKADAHRFLS-QAFEN 62
Query: 86 GCVGVIGNQ--VCNNWDKG-FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
G + ++ C G ++VE +T +L ++ Y R SR S LVG+TGSVG
Sbjct: 63 GAAASLTSEHDTCPEGITGALIRVE-----DTKKALQDIGRYIR-SRLSLPLVGITGSVG 116
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TT+ MIA AL S G F++ N N++VGV +++ I A +I VLE+GMS GE+
Sbjct: 117 KTTTREMIAAAL-SAGYRTFKTPANHNSQVGVPITISDISEADEIGVLELGMSEPGEMEV 175
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV 262
+A +AR + V+ N+G +H+E+LGS E++ + K I K G LN D+ L+ ++
Sbjct: 176 IADIARVDTAVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRA 235
Query: 263 PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
G F+G C R V G +V +V V+ G H +NA AA
Sbjct: 236 KDGCETSFYGLGANCSYRAVNITYNGGRPAFDMV--HGAAVVPVVLEVMGEHNILNALAA 293
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
AVA + V LA +L F + R ++ + I I++D YNA+P S +A I +L
Sbjct: 294 LAVADHYHVPLADAAEALKTFDGFKNRQQIY-EKGNITIIDDTYNASPDSMKAGIRVLAS 352
Query: 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420
+ +R+ +L DM ELG H +I ++ + ++
Sbjct: 353 LTDRKRRIAVLADMKELGEDAPLFHYEIGAFLGEQPVE 390
>gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella suis bv. 4 str. 40]
gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
[Brucella suis bv. 4 str. 40]
Length = 481
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 128/436 (29%), Positives = 203/436 (46%), Gaps = 35/436 (8%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT + + E + G+ P G+ I D+R L P + FFAI G+ FD H+F + +
Sbjct: 10 LWTSDAMVEVMEGRPFGNLPAGVTGISIDSRALKPG--EAFFAIKGEQFDGHDFATAAMA 67
Query: 84 GKGCVGVIGNQ---VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ N + VE + L +L+ + AR +R ++ VTGS
Sbjct: 68 AGAGLLVVAEHRLPAFGNTKVPMIVVE-----DVLEALIRLGIAAR-ARSKAQIIAVTGS 121
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L +G V S ++NN GV L+L + VD V E+GM+ GEI
Sbjct: 122 VGKTTTKEALRHVLSDVG-KVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEI 180
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L +M P + ++ + +HL +LE++A AK EIF+ G +LN DD +
Sbjct: 181 RPLVKMVCPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQL 240
Query: 258 ANLTVPRGVRKV-FFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
L GV + FG D RL ++ + V + VK I PG H+
Sbjct: 241 QELAEKAGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGI--PGRHVV 298
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPV---QMRSELLVSRSGIKIVNDAYNANPIST 373
N A A L G +A+V ++++ S R L +++++YNANP S
Sbjct: 299 QNMLAVLGAAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSM 358
Query: 374 RAAIDLLKDI---ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR-- 428
RAA+ LL G+R+ +LGDM+ELG + H + DA ++ + + G
Sbjct: 359 RAALSLLHSTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMS 418
Query: 429 -------VVVQCKWRK 437
V +Q ++R+
Sbjct: 419 VLKNALPVEIQTEYRQ 434
>gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aerococcus viridans ATCC 11563]
gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Aerococcus viridans ATCC 11563]
Length = 466
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 192/384 (50%), Gaps = 21/384 (5%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGF--VQVEGN 109
D+R++ P F + G D H +I + G V + + N GF +QVE
Sbjct: 33 DSRLITPGA--LFVPLKGAT-DGHSYIDKAIEN-GAVAALWSNDPNEAPVGFPIIQVE-- 86
Query: 110 GNVNTLNSLVNMACYARNSR--FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
++LV M +A+ +VG+TGS GK+TTK M A AL S + V ++ GN
Sbjct: 87 ------DTLVAMQAFAKAYLGWIKPKVVGITGSSGKTTTKDMTAAAL-STALKVHKTNGN 139
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
+NN +G+ +++ + ++ VLEMGMSG GEI L+++A P++ V+ +G++H+E LGS
Sbjct: 140 YNNDIGLPKTILDMPEDTEVIVLEMGMSGAGEISFLSKLAEPDVVVITMIGENHIEFLGS 199
Query: 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E++A+AK EI K + D+PL+ + +P +++ D + A V
Sbjct: 200 RENIAKAKLEILDGLKEEGTFIYPGDEPLIVD-QMPTDLKQSTLTIGLNDDHDIFAFDVM 258
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
E+ K IP G + NA A VA FG+S+ QV +L+ FS
Sbjct: 259 MDQFQSTFYTNLSPEL-KMEIPLSGGYNVQNALYALGVAYSFGLSMEQVRPNLAEFSITP 317
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNG--KRVVILGDMLELGSTERE 405
R +I+ND YNA+P + +A I IA G +++++LGDMLELG+ E
Sbjct: 318 DRGSWERGILDTQILNDTYNASPSAMKAVIRNFSAIASKGMSQKILVLGDMLELGAFSDE 377
Query: 406 SHEKILSYCCDACIDLIGLVGDRV 429
H +I + + L G R+
Sbjct: 378 LHREIATVIGLNTFKHVFLYGPRI 401
>gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gasseri JV-V03]
gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gasseri JV-V03]
Length = 455
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 196/410 (47%), Gaps = 37/410 (9%)
Query: 31 EIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
EIA+++N + G +I + D+R PN F + G D H+F+S + G
Sbjct: 7 EIAKALNSSV-NMGEDKVITSVVFDSRKATPN--SLFIPLAGVR-DGHDFVSNAM-ANGA 61
Query: 88 VGVIGNQVCNNWDKGF---------VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ W KG ++VE + L +L ++A Y + + +VG+T
Sbjct: 62 EATL-------WKKGHEGKPTDVPVIEVE-----DPLTALQSLAKYYL-GKVNPTVVGIT 108
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+A L + NV ++ N+NN +GV ++++ + + +I VLEMGM G
Sbjct: 109 GSNGKTTTKDMVAAVL-AKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPG 167
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
++ L+ + RP++ V+ +G++H+E G+ + +A AK EI K + N D+PL+
Sbjct: 168 QLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLE 227
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
K FG+R V + E +F IP G H N
Sbjct: 228 ERAAKIKQDKSTFGFREEDTVFATTFR----SYMHHATFEVNDSEQQFKIPMIGKHNVSN 283
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA +V FG + Q+ +L+NF+P R + G I++D YN+NP + +A
Sbjct: 284 ALAAISVGRHFGENYEQIAQALANFTPTANRMQWKKGDVGEAIMDDVYNSNPTAVKAVTT 343
Query: 379 LLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ G+R+ +LGDMLELG E H + + A I+ + L G
Sbjct: 344 SFGQVMVKDGGRRIAVLGDMLELGDESAELHASLANALDPAIINELYLYG 393
>gi|375087682|ref|ZP_09734028.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Dolosigranulum pigrum ATCC 51524]
gi|374563958|gb|EHR35262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Dolosigranulum pigrum ATCC 51524]
Length = 458
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 201/409 (49%), Gaps = 24/409 (5%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ IAE+V G++ I + D+R + F + + D H+F S +
Sbjct: 5 TLATIAEAVAGRVYPNNAGDIRIRGVQFDSRQI--ESGNLFVPLVAER-DGHDFTSGAIE 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V + ++ + G + + +TL + +A + S +V +TGS GK
Sbjct: 62 -KGAVATLWSKDAADVPAGVPAILVD---DTLAAYQALAGWYLQ-EVSPTVVAITGSNGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M A A+ S ++ N+NN +GV ++++ + D+ +LEMGM G+I +L
Sbjct: 117 TTTKDMTA-AVVSTQYKTHKTEANYNNHLGVPMTILSMAPETDVIILEMGMDHPGDIHDL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ +A+P+I V+ +G+SHLE GS E +A+AK E+ K V V D+PL+A
Sbjct: 176 SLLAQPDIGVITMIGESHLEFFGSREKIAQAKLELLDGFKSSSVLVTTGDEPLLAEALAT 235
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE---REMVKFVIPSPGLHLAINAC 320
+ FG G D+R AN + ++ V E E + IP PG H NA
Sbjct: 236 --TQSYSFGLEEGNDLR------ANDIVNLKHVTEFAVVGHEELTVTIPVPGRHNVHNAL 287
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380
AA +V + L L+ F + R E + + +I+NDAYNA+P S +A + +
Sbjct: 288 AALSVGLQLEIPLEVGAAGLATFQLTKNRLEWIAGKQHSQILNDAYNASPSSMKAVLGYM 347
Query: 381 KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
+ +G+++V+LGDM ELG R HE + + D + L G+ +
Sbjct: 348 GALEHDGRKLVVLGDMRELGEQSRMLHESLAASIELGEFDEVFLYGEEM 396
>gi|295425678|ref|ZP_06818365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus amylolyticus DSM 11664]
gi|295064694|gb|EFG55615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus amylolyticus DSM 11664]
Length = 455
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 189/389 (48%), Gaps = 28/389 (7%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGFVQVEGNGNV----NTLNSL 118
F + G+ D H+F++ G I N W KG + V + L ++
Sbjct: 40 FVPLEGER-DGHDFVA---------GAINNGASATLWKKGHPNKPDDIAVLEVDDPLEAM 89
Query: 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
++A Y + + +VG+TGS GK+TTK M+A L S NV ++ N+NN +GV +++
Sbjct: 90 QDLARYYL-RKVNPTVVGITGSNGKTTTKDMVAAVL-SKRFNVHKTQENFNNGIGVPMTI 147
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + +I VLEMGM G++ L+ + P++ V+ +G++H+E G+ + +A AK EI
Sbjct: 148 LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVCVITMIGEAHIEFFGTRDKIADAKMEI 207
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+ + N D+PL+A K FG+ V + +
Sbjct: 208 TDFLREDGEFIYNGDEPLLAERAKKINQAKATFGFEDNDTVYATGFRSYKHHATFTINDS 267
Query: 299 KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG 358
++ KF IP G H NA AA +V FG S ++ SL+NF+P R E G
Sbjct: 268 EQ----KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIAASLANFTPTANRMEWEKGDVG 323
Query: 359 IKIVNDAYNANPISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCD 416
I++D YN+NP + RA ++ I G+R+ +LGDMLELG E H + +
Sbjct: 324 EDIMSDVYNSNPTAVRAVLNSFGQIEMPNGGRRIAVLGDMLELGKKSPELHAGLANSLDP 383
Query: 417 ACIDLIGLVGDRV-----VVQCKWRKWSM 440
I+ + L+GD + +Q K+ + S+
Sbjct: 384 QVINEVYLIGDEMKHLYEALQTKYSEESL 412
>gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Shewanella sp. ANA-3]
gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Shewanella sp. ANA-3]
Length = 460
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 188/379 (49%), Gaps = 19/379 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ +D+R + P F A+ G+ FD H+F + + ++ Q+ + + V
Sbjct: 27 LSSDSRKIGPAT--LFVALKGERFDGHDFAATAIENGAVALLVERQLAFDVPQLIV---- 80
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ ++ + Y R+ + + V +TGS GK++ K MIA L S V + GN+
Sbjct: 81 ---ADCQKAMGAIGAYVRD-QVDPICVALTGSNGKTSVKEMIATIL-SAKHQVLYTAGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ + V E+G + KGEI + + RP + +V NVG +HLE GS
Sbjct: 136 NNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSSLVRPHVALVNNVGSAHLEGFGSQ 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVR----LVA 283
VA+AK EI+ + G ++NADD + V + +++ F + G R +
Sbjct: 196 AGVAQAKSEIYNHLQPGGTAIINADDAFADVMRVKAKQYKQLSFSQQEGAAKRQIDVIAT 255
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
AN + +L E + +P G H NA AAA+V G+SL ++ LS
Sbjct: 256 GHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNALAAASVCIALGLSLKEIAEGLSQL 315
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
+PV+ R + +++++D+YNANP+S AAI LK+I+ N R ++LGD+ ELG
Sbjct: 316 TPVKGRMQ-PTQLGRVRLIDDSYNANPVSVGAAIAWLKEISEN--RCLVLGDLGELGDNA 372
Query: 404 RESHEKILSYCCDACIDLI 422
H ++ ID +
Sbjct: 373 PLLHAELGQLAKQQGIDAL 391
>gi|402574217|ref|YP_006623560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus meridiei DSM 13257]
gi|402255414|gb|AFQ45689.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desulfosporosinus meridiei DSM 13257]
Length = 470
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 199/416 (47%), Gaps = 29/416 (6%)
Query: 27 WTINEIAESVNGKILKWGPP-----GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
WT +A V G +L G P G I D+R + FFA+ G+ D H++I
Sbjct: 4 WTTGAVAGFVKGNLL--GDPDQKVHGCIL-DSR--QAQGGEMFFALPGERVDGHDYIDAA 58
Query: 82 LYGKGCVGVIGNQVCNN--------WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGV 133
+ G V V+ ++ K + VE + +L +A Y R
Sbjct: 59 -WNNGAVLVVADEARFRGAGEPRVPESKALLLVE-----SVFKTLQELAQYWR-VELKAK 111
Query: 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193
+VGVTGS GK+TTK MI L S V+++ N NN +G+ ++++ ++ +LEMG
Sbjct: 112 VVGVTGSNGKTTTKDMIYAVL-SQEFRVYRNKENHNNELGLPMTILNAPLDTEVLILEMG 170
Query: 194 MSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253
M G GEI L + +P+I V+ N+G +HLE L + E +A+AK E+ G V ++NA+
Sbjct: 171 MRGLGEIKALCDIGKPDIGVITNIGTTHLELLLTQERIAQAKWELIDALPEGGVAIINAE 230
Query: 254 DPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN---GGLGVQVVLEKEREMVKFVIPS 310
D ++ + G + V G LG + + + V +P
Sbjct: 231 DQFSVEKARKDLKHQISYYGIEGAFAEPIIKGVKLQHWGDLGTAFDVLYKDQRVTANLPL 290
Query: 311 PGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370
PG H ++A AA V T+ GVSL + L +MR E+ S I+ND YNANP
Sbjct: 291 PGTHNVLDALAALTVGTVLGVSLDKGCTGLRELELSRMRLEIRRGVSESLIINDVYNANP 350
Query: 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+S +A++ +LK+ A + + ILG+M ELGS+ H ++ D I + VG
Sbjct: 351 VSMQASLQVLKERAGGNRTLAILGEMYELGSSAESGHREVGRALSDLGISELITVG 406
>gi|336055389|ref|YP_004563676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus kefiranofaciens ZW3]
gi|333958766|gb|AEG41574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus kefiranofaciens ZW3]
Length = 455
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 185/385 (48%), Gaps = 28/385 (7%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGFVQVEGNGNV----NTLNSL 118
F + G+ D H+FI G I N W KG + V + L ++
Sbjct: 40 FVPLEGER-DGHDFIE---------GAISNGASATLWKKGHPNKPDDIAVIEVDDPLAAI 89
Query: 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178
++A Y + + +VG+TGS GK+TTK M+A L S NV ++ N+NN +GV +++
Sbjct: 90 QDLARYYLR-KVNPTVVGITGSNGKTTTKDMVAAVL-SKRFNVHKTQANFNNGIGVPMTI 147
Query: 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238
+ + +I VLEMGM G++ L+ + P++ V+ +G++H+E G+ + +A AK EI
Sbjct: 148 LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVTVITMIGEAHIEFFGTRDKIADAKMEI 207
Query: 239 FQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298
+ + N D+PL+ K FG+R D V A +
Sbjct: 208 TDFLREDGEFIYNGDEPLLQERAKKLDQAKATFGFR---DEDTVHATGFKSYMHHATFTI 264
Query: 299 KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG 358
+ E KF IP G H NA AA +V FG S ++ SLSNF P R E +G
Sbjct: 265 NDSEQ-KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIATSLSNFKPTANRMEWEKGDAG 323
Query: 359 IKIVNDAYNANPISTRAAIDLLK--DIACNGKRVVILGDMLELGSTERESHEKILSYCCD 416
I++D YN+NP + RA I ++ +G+R+ +LGDMLELG E H +
Sbjct: 324 EAIMSDVYNSNPTAVRAVITSFGQVEVKPDGRRIAVLGDMLELGKNSPELHAGLNDTLDP 383
Query: 417 ACIDLIGLVGDRV-----VVQCKWR 436
I+ + L G + +Q K++
Sbjct: 384 QIINEVYLYGSEMKNLYDALQDKYK 408
>gi|399044595|ref|ZP_10738198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium sp. CF122]
gi|398057015|gb|EJL48995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium sp. CF122]
Length = 477
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 198/417 (47%), Gaps = 21/417 (5%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT ++ ++ G+ P GI I D+R +AP + FFAI G D H+F S +
Sbjct: 4 LWTTEDMIAAMAGRPFGTLPEGITGISIDSRSIAPG--EAFFAIKGDRVDGHDFASMAMA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNV-NTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
+ V+ + V V +V L L A ++ +V VTGSVG
Sbjct: 62 NGAALLVVSEARLPAMGRLTVPVIVVEDVLAALGKLAVAARARSRAQ----IVAVTGSVG 117
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K+TTK M+ L G V S ++NN GV L+L + V E+GM+ EI
Sbjct: 118 KTTTKEMLRRVLAPSG-KVHASVASFNNHWGVPLTLARMPLDTYFGVFEVGMNHPDEIRP 176
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LVAN 259
L +M +P + V+ + +HL + S+ ++A AK EIF+ G VLN D+ +
Sbjct: 177 LVKMIKPHVAVITTIAPAHLGNFKSIREIATAKAEIFEGVVPGGQVVLNRDNDQFNFLER 236
Query: 260 LTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
G++ + FG D RL ++ + + ++ E + V I +PG H+A N
Sbjct: 237 TAQAWGIQHIHSFGQHAKADFRLAEFNGSDQSSTLWITIDGETKEV--AIGAPGRHIAEN 294
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPISTRA 375
A AA V + G + Q +L+ P + R L + RS +V+++YNANP S RA
Sbjct: 295 ALAALGVVKIVGADMQQAIGALATLQPEKGRGRRHRLAIERSSFTVVDESYNANPASMRA 354
Query: 376 AIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430
AI +L G+RV +LGDMLE+G ++ H + A I+ + L G +V
Sbjct: 355 AIAVLASSVPTGTGRRVAVLGDMLEMGDYAQKVHSDLAGPLLAAGIEHVWLAGPEMV 411
>gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|424918901|ref|ZP_18342265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium leguminosarum bv. trifolii WSM597]
gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|392855077|gb|EJB07598.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhizobium leguminosarum bv. trifolii WSM597]
Length = 477
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 198/415 (47%), Gaps = 25/415 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT ++ ++ G+ P GI I D+R +AP + FFAI G D H++ S +
Sbjct: 4 LWTTEDMIAAMAGRPFGTLPEGITGISIDSRSIAPG--EAFFAIKGDRVDGHDYASMAMA 61
Query: 84 GKGCVGVIGNQVCNNWDK---GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + + VE + L +L + +R R ++ VTGS
Sbjct: 62 NGASLLVVSEARLPAMGRLTVPMIVVE-----DVLAALGRLGLASRQ-RSKARIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ L G V S ++NN GV L+L + D V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRHVLSPSG-KVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDP---LV 257
L M RP + ++ + +HL + +++++A AK EIF+ + G VLN D+ +
Sbjct: 175 RPLVEMIRPHVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFL 234
Query: 258 ANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
G+ + FG + RL A+ + L E ++ I +PG H+A
Sbjct: 235 DRTAQSLGIEHIHSFGQHAKAEFRL--AEFNGADENSTLWLTIGGETLEVAIGAPGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA AA V + G + + +L+ P + R L + +++++YNANP S
Sbjct: 293 ENALAALGVVRIVGADMEKAIAALATLKPEKGRGKRHRLSIGSGSFTLIDESYNANPASM 352
Query: 374 RAAIDLL--KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
RAAI LL + G+R+ +LGDMLE+G ++ H ++ A I+ + L G
Sbjct: 353 RAAIALLAASEPTSRGRRIAVLGDMLEMGEYAQKVHTDLVVPLLAAGIEHVWLAG 407
>gi|418297287|ref|ZP_12909129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Agrobacterium tumefaciens CCNWGS0286]
gi|355538385|gb|EHH07632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase
[Agrobacterium tumefaciens CCNWGS0286]
Length = 477
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 200/416 (48%), Gaps = 25/416 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT+ ++ G+ + GI I D+R + + FFAI G D H++ S +
Sbjct: 4 LWTVADMIAITAGRPVGNLSTGITGISIDSRTV--KAGEAFFAIKGDRVDGHDYASFAVA 61
Query: 84 GKGCVGVIGN---QVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
+ V+ + VE + L +L +A AR R S ++ VTGS
Sbjct: 62 NGASLLVVAEGKLPALGRLTVPMIVVE-----DVLTALGKLAIAARE-RTSARIIAVTGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK M+ AL G V + ++NN GV L+L + + V E+GM+ GEI
Sbjct: 116 VGKTTTKEMLRQALAPSG-RVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L +M RP + ++ + +HL + ++E++A AK EIF+ + G +LN D+ L
Sbjct: 175 RPLVKMVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGLEEGGSVILNRDNAQFEQL 234
Query: 261 ---TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+G+ + FG D RL + G + +L E + I PG H+A
Sbjct: 235 EEAAQEQGIEHILTFGQHAKADFRLADFESTATGSTIWAILNGETSELHINI--PGRHIA 292
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPIST 373
NA A + G +L + +L + V+ R L ++ +++++YNANP S
Sbjct: 293 DNAMAVLGAVAVTGANLDRAFEALGSLEAVKGRGQRHHLSINGGSFLLIDESYNANPASM 352
Query: 374 RAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
RAAI +L + +G+RV +LGDMLE+G + HE++ A I+ + L G+
Sbjct: 353 RAAIAVLAETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGE 408
>gi|366054165|ref|ZP_09451887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus suebicus KCTC 3549]
Length = 458
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 201/408 (49%), Gaps = 25/408 (6%)
Query: 31 EIAES--VNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
EIA++ V I KW I + D+R L F + GQ D H F S + G
Sbjct: 7 EIAKAIAVKNDISKWQDVEITSVAFDSRNLV--GGALFVPLQGQ-TDGHRFAS-SAFDNG 62
Query: 87 CVGVI---GNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ + V + D+ + V+ N L +L + Y + + + ++V VTGS GK
Sbjct: 63 ASATLWAEDHSVTTSEDQPVLVVD-----NPLKALQELGKYYLH-KINPIVVAVTGSNGK 116
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK MIA L S +NV ++Y N+NN++GV ++L+G++ + V+EMGM GE+ L
Sbjct: 117 TTTKDMIASIL-STQMNVTKTYANFNNQIGVPMTLLGMEPNTEAVVVEMGMDHFGELDFL 175
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-- 261
+ M P+I V+ +G++H+E G+ + +A AK EI K V N D+PL+ T
Sbjct: 176 SNMVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVYNGDEPLLNERTTD 235
Query: 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACA 321
+ + +RK FG + D+ + + V + E F IP G + NA A
Sbjct: 236 LKQVLRK--FGRQLSNDLYATSVNAKTHEIEFHVNVWPED---TFTIPMMGEYNVNNALA 290
Query: 322 AAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381
A V + +S + +L+N R+E + +G +I++D YN+NP + + +
Sbjct: 291 AMTVGQILHISTKNMKNALANVELTANRAEWINGTAGEQILSDVYNSNPTAAKQVLHAFA 350
Query: 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
G+RVV+LGDMLELG H + S I + L+G ++
Sbjct: 351 KTPTEGRRVVVLGDMLELGDAAPHLHASLESEISPNSISDVYLIGPQM 398
>gi|359432529|ref|ZP_09222904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudoalteromonas sp. BSi20652]
gi|357920828|dbj|GAA59153.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Pseudoalteromonas sp. BSi20652]
Length = 430
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 193/381 (50%), Gaps = 19/381 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F A+ G +FD H+FI+ E KG +GVI N F+ +
Sbjct: 27 INTDTRTVC--DGEVFLALKGPNFDGHKFIA-EAKQKGAIGVIVQHKVNVDIPQFIVSDT 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ + + V MA A + + +TGSVGK+T K M A L G +V + GN+
Sbjct: 84 RIALGAIGTAV-MAQVAPKT------IAITGSVGKTTVKEMCAAILSVHG-DVLATKGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ AV+E+G + GEI M +P++ VV NV +HLE GSL
Sbjct: 136 NNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
VA+AKGEIF K V ++N D + R V++ F D+
Sbjct: 196 MGVAKAKGEIFDGLKDDGVAIVNCDSEFSQYWLDKLEGRNVKR--FSTTEKLDI-WAENI 252
Query: 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345
+ L + + V + PG H NA AAA+ + F V+L ++ +L+
Sbjct: 253 TLDANARASFTLCTKNKQVPVTLALPGKHNISNALIAAALTSEFDVTLEEIANALATMGD 312
Query: 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERE 405
V+ R L+ + +V+D YNAN S +AAIDLL DI +G R++ LGDM ELG R+
Sbjct: 313 VKGRVNLIEVSDLLTVVDDTYNANVKSVKAAIDLLSDI--HGHRILALGDMGELGEDARK 370
Query: 406 SHEKILSYCCDACIDLIGLVG 426
H+++ Y + ID + +G
Sbjct: 371 YHQEVGEYALEQGIDELFTLG 391
>gi|427393208|ref|ZP_18887111.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Alloiococcus otitis ATCC 51267]
gi|425730790|gb|EKU93622.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Alloiococcus otitis ATCC 51267]
Length = 464
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 208/407 (51%), Gaps = 24/407 (5%)
Query: 27 WTINEIAESVNGKILKW-GPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
W + EIA++V G+++ G + + D+R L P F I GQ D H+F L
Sbjct: 3 WKLKEIAQAVGGELVSADGQEEVTGVHFDSRRLEPGD--LFVPILGQR-DGHDFAQAAL- 58
Query: 84 GKGCVGVIGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSV 141
+G G + + KG ++VE ++ +LV++A + + + + + +TGS
Sbjct: 59 DQGASGAFWAKDSSLAPKGLPLIKVE-----DSYQALVDLAKWHLEA-VAPMKIAITGSN 112
Query: 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEIL 201
GK+TTK M+A ++ ++ GN NN +GV ++++ + + V+EMGM G G+I
Sbjct: 113 GKTTTKDMVA-SVVGQEFKCHKTVGNLNNELGVPMTILAMPEDCQVIVVEMGMDGPGQIS 171
Query: 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL- 260
L+++ +P+I ++ +G++H+E GS + +A+AK EI V + N D+PL+ +
Sbjct: 172 ALSKLLQPDIAIITMIGEAHIEFFGSRDMIAQAKLEILDGLSDQGVFIANGDEPLLESAL 231
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
P +R FG D+ + ++ G Q L + + +F IPSPG + INA
Sbjct: 232 NHHPHSLR---FGQSPHNDIYPLTTEI--GQRQSQFTLNLDPSL-QFTIPSPGKYNVINA 285
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379
AA VA + + L L++F + R E L ++NDAYNA+P S +A ++
Sbjct: 286 LAAVLVAQVLNLDLQLAVQGLAHFQLSKNRLEWLDGYKQAHLLNDAYNASPTSMKAVLEY 345
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ G+++ +LGD+ ELGS + H+ + +D + L G
Sbjct: 346 FSHLDLAGEKIAVLGDLRELGSLSSQLHQSLSQAIDPKLLDRVVLYG 392
>gi|365961209|ref|YP_004942776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavobacterium columnare ATCC 49512]
gi|365737890|gb|AEW86983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Flavobacterium columnare ATCC 49512]
Length = 427
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 189/368 (51%), Gaps = 28/368 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTDTR ++PN F A+ G +++A+EF + E KG + VI + DK + E
Sbjct: 16 VCTDTRKISPN--SLFIALKGDNYNANEF-AQEALNKGALFVIID------DKKYYTDEN 66
Query: 109 NGNV--NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
+ N+L +L +A Y RN + ++ +TGS GK+TTK +I + L S + G
Sbjct: 67 KMLLVNNSLQALQELANYHRN-QLGLPIIALTGSNGKTTTKELINVVL-SKKYKTIATIG 124
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV L+L+ I DIA++EMG + + EI L + P+ + N G +HLE G
Sbjct: 125 NLNNHIGVPLTLLSIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNFGKAHLEGFG 184
Query: 227 SLEDVARAKGEIFQESKLGD-VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
+E V + K E++ K + +N DD + T + + + F ++ +
Sbjct: 185 GIEGVIKGKSEMYTYLKTHNKTAFVNLDDSIQEEKT--QHINRYTFSTDNNKKANIIINK 242
Query: 286 V-ANGGLGVQVV-LEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
+ AN + ++ +E + ++ G++ + N A ++ T F VS + ++ N+
Sbjct: 243 IEANPFVKIKYNGIEIQSNLI-------GIYNSNNINVAISIGTYFNVSEQDIKQAIENY 295
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE 403
P RS+ L+ + KI+ DAYNANP S AAI + + +G ++ LGDM ELG
Sbjct: 296 IPANNRSQ-LIEKGNNKIILDAYNANPSSMAAAISNFQQL--DGSKIAFLGDMFELGEES 352
Query: 404 RESHEKIL 411
H+KI+
Sbjct: 353 LTEHKKII 360
>gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum NCC2705]
gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
DJO10A]
gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum ATCC 55813]
gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68]
gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bifidobacterium sp. 12_1_47BFAA]
gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis 157F]
gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum JCM 1217]
gi|419849029|ref|ZP_14372102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 35B]
gi|419851463|ref|ZP_14374392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 2-2B]
gi|419854566|ref|ZP_14377353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 44B]
gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum NCC2705]
gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
DJO10A]
gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68]
gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bifidobacterium sp. 12_1_47BFAA]
gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum JCM 1217]
gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. infantis 157F]
gi|386413162|gb|EIJ27783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 35B]
gi|386413519|gb|EIJ28121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 2-2B]
gi|386417655|gb|EIJ32129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 44B]
Length = 483
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 210/419 (50%), Gaps = 31/419 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++ EIA++V+G+++ G G +D+R P F AI G+ D H+F++
Sbjct: 5 SVEEIAKAVDGRLI--GDAGSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAKT 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVT 138
V ++ ++V ++ G Q+ V+ L L R + F ++G+T
Sbjct: 61 AGQGATVAIVDHEVKSD---GLPQIVVKDTVDALGELARYNIVRRRELDGDFD--IIGLT 115
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S G
Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIG 174
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 175 EIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVV 234
Query: 259 NLTVPRGVRKVFFGW--RRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+ ++FG + +VR + +++ + + PG H
Sbjct: 235 PMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNV 294
Query: 317 INACAAAAVATLFGV---SLAQVGISLSNFSPVQMRSELLVSRSG--IKIVNDAYNANPI 371
+NA AAA VA +G+ ++A++ S SP +M + V+R G +++D++NANP
Sbjct: 295 MNALAAATVAMRYGMAPETVARILASQHTISPHRM-ALSTVNREGTSFTLIDDSFNANPD 353
Query: 372 STRAAIDLLKDIACN-GK---RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
S +A ++ LK N GK RV +LG MLELG+ E H I +Y + ID I VG
Sbjct: 354 SMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVG 412
>gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium
longum DJO10A]
gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum F8]
Length = 480
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 210/419 (50%), Gaps = 31/419 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++ EIA++V+G+++ G G +D+R P F AI G+ D H+F++
Sbjct: 2 SVEEIAKAVDGRLI--GDAGSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAKT 57
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVT 138
V ++ ++V ++ G Q+ V+ L L R + F ++G+T
Sbjct: 58 AGQGATVAIVDHEVKSD---GLPQIVVKDTVDALGELARYNIVRRRELDGDFD--IIGLT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S G
Sbjct: 113 GSVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIG 171
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 172 EIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVV 231
Query: 259 NLTVPRGVRKVFFGW--RRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+ ++FG + +VR + +++ + + PG H
Sbjct: 232 PMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNV 291
Query: 317 INACAAAAVATLFGV---SLAQVGISLSNFSPVQMRSELLVSRSG--IKIVNDAYNANPI 371
+NA AAA VA +G+ ++A++ S SP +M + V+R G +++D++NANP
Sbjct: 292 MNALAAATVAMRYGMAPETVARILASQHTISPHRM-ALSTVNREGTSFTLIDDSFNANPD 350
Query: 372 STRAAIDLLKDIACN-GK---RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
S +A ++ LK N GK RV +LG MLELG+ E H I +Y + ID I VG
Sbjct: 351 SMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVG 409
>gi|388259727|ref|ZP_10136896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
sp. BR]
gi|387936453|gb|EIK43015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
sp. BR]
Length = 463
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/372 (33%), Positives = 197/372 (52%), Gaps = 25/372 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ D+R L N + F A+ G+ FDAH+FI+ + K C V+ ++ F +++
Sbjct: 37 VSIDSRTL--NAGELFVALRGERFDAHDFIADAVAKKPCALVV--------ERFFPEIKL 86
Query: 109 NGNV--NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
V ++L +L +A R S F+ ++ +TGS GK+T K+++A L G + G
Sbjct: 87 PQLVVSDSLLALGQIAALNR-SLFARPVIAITGSSGKTTVKTLLAGILAECG-PAHATKG 144
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV L+L+ ++ + AV+EMG SG GEI L +A P+I +V NV +H++ G
Sbjct: 145 NFNNHIGVPLTLLQLEAHHEFAVIEMGASGPGEIEYLCSLAVPQITMVNNVMAAHIQGFG 204
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPL----VANLTVPRGVRKVFFGWRRGCDVRLV 282
SL+ VARAKGEI+ V V+N DD +A LT R +R F C
Sbjct: 205 SLQGVARAKGEIYAALPATGVAVVNMDDRFAPDWLAALTNRRVLRVSFKDTGADC----F 260
Query: 283 AAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
A + ++ + + ++ + + G H NA AAA A+ G L ++ L+N
Sbjct: 261 AQDIQTSANSLEFAINLNGQAMQVSLNAQGEHNVRNALMAAACASAVGADLQKIKQGLAN 320
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
F+PV R + + + I++D+YNANP S RAAID+L A +++LGD+ ELG
Sbjct: 321 FAPVAGRMSRHIGINDVAIIDDSYNANPGSVRAAIDVL---AQKKNSILVLGDLGELGPE 377
Query: 403 ERESHEKILSYC 414
+ H ++ Y
Sbjct: 378 APQLHTELGEYA 389
>gi|406668915|ref|ZP_11076206.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Facklamia ignava CCUG 37419]
gi|405585196|gb|EKB59031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Facklamia ignava CCUG 37419]
Length = 475
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 196/393 (49%), Gaps = 36/393 (9%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNW--DK-GFVQVEG 108
D+R + P F +TG D H+++ + +G V ++ ++ D+ + V+
Sbjct: 35 DSRKIKPG--DLFVPLTGGASDGHDYVVNAI-EQGAVATFWSREADSAPIDQLAVIYVD- 90
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL ++ ++A Y R+ +++G+TGS GK+TTK M+A AL + ++ ++ GN+
Sbjct: 91 ----DTLRAMQSLANYYRH-LIDPIVIGITGSNGKTTTKDMMANAL-TAKYHIHKTEGNY 144
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G+ +++ + + ++AVLEMGMSG GEI L+ +A P+I V+ +G+SHLE LGS
Sbjct: 145 NNEIGLPYTILSMPKETEVAVLEMGMSGFGEIALLSHIAEPDIAVITLIGESHLEFLGSR 204
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP--RGVRKVFFGWRRGCDVRLVAAQV 286
+A+AK EI V + +PL+ + V + FG DV
Sbjct: 205 AGIAQAKLEILSGLNPEGVFIYPGAEPLITDFLEDWVSSVECISFGLEEDNDV------- 257
Query: 287 ANGGLGVQVVLEKEREMVKF--------VIPSPGLHLAINACAAAAVATLFGVSLAQVGI 338
++ EK++ K IP G + NA A +VA V + Q
Sbjct: 258 ----YAYDIIEEKDQTYFKTNLDSNVICKIPVMGAYNVNNAVVALSVAKRLNVPIEQAIF 313
Query: 339 SLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI--ACNGKRVVILGDM 396
L+ F R E + + +G++++NDAYNA+P S +A + + G+R+ +LGD+
Sbjct: 314 QLAQFKLTASRLEWIQADNGLQVLNDAYNASPTSMKAVLQAFARLQRPKGGRRIAVLGDI 373
Query: 397 LELGSTERESHEKILSYCCDACIDLIGLVGDRV 429
ELG H I IDL+ L GD +
Sbjct: 374 RELGEKSEAYHRSIAEVIDPETIDLVYLFGDEM 406
>gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
magna ATCC 29328]
gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
magna ATCC 29328]
Length = 454
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 182/364 (50%), Gaps = 18/364 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + K+ F A+ G +FD +I V+ N D ++V+
Sbjct: 29 ISTDTRTIQ--KDNMFIALRGDNFDGQNYIEMAFEKGASCCVVNRDYRNINDYPVIEVD- 85
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
NT ++++A S ++ +TGS GK+TTK +++ L+ V ++ N+
Sbjct: 86 ----NTKEFMMDLA-RGYISSLDCKVIAITGSNGKTTTKDIMSSLLKE-KYKVVKTQKNY 139
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +G++ ++ ID ++AVLEMG GEI +L +A P+I ++ N+GDSHL +L +
Sbjct: 140 NNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTK 199
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV--RKVFFGWRRGCDVRLVAAQV 286
E++ARAK EI + K + +LN DDP++ + + + + G + D R+ +
Sbjct: 200 ENIARAKFEILEGLKEDGIFILNNDDPILREVKQEYKLPEKTITLGIKPDSDYRMEMIKA 259
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + + V F I G H NA + VA L G+ + + L N
Sbjct: 260 DETGSTFSI-----NDHV-FNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELT 313
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
MR+EL++ I+ND+Y +NP S + ++ + +++ +LGDMLELG E
Sbjct: 314 GMRNELIL-LDKFHILNDSYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITL 372
Query: 407 HEKI 410
H+ I
Sbjct: 373 HKNI 376
>gi|428319316|ref|YP_007117198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoria nigro-viridis PCC 7112]
gi|428242996|gb|AFZ08782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoria nigro-viridis PCC 7112]
Length = 460
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 192/380 (50%), Gaps = 22/380 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR L + F A+ G++FD H+F++ +G I V +W +
Sbjct: 33 IATDTRTL--EGGEVFLALRGENFDGHQFVAK----ARDLGAIAAIVDRHWQEELPNFPL 86
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL + ++A + R+ +FS +V VTGSVGK+T K +IA L + G NV ++ N+
Sbjct: 87 LRVDDTLKAYQSIARWWRD-QFSIPIVAVTGSVGKTTVKELIAAVLSTKG-NVLKTQYNY 144
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV +L+ + A + AV+EMGM G GEI L++MARP + V+ NVG +H+ LGS
Sbjct: 145 NNEIGVPKTLLELSPAHNYAVIEMGMRGSGEIALLSQMARPTVAVITNVGTAHIGRLGSE 204
Query: 229 EDVARAKGEIFQESKLGDVCVLNAD-DPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
E +A+AK E+ E V +LN D D L+A + + +G G + Q+
Sbjct: 205 EAIAQAKCELLAEMPADSVAILNHDCDRLIATAAKVWQGKTLTYGLEGGD----LCGQLL 260
Query: 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347
N + E V+ +P PG H A+N AA AV + G+ + LS P
Sbjct: 261 NHDTMLV-------EGVELPLPLPGRHNAVNYLAALAVGKVLGIDWEVLKQGLSVQLP-D 312
Query: 348 MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESH 407
R+ I I+++ YNA S AA+ LL D +R+ +LG M ELG E H
Sbjct: 313 GRARRYDLPQDIVILDETYNAGLESMLAALRLLADTPGK-RRIAVLGTMKELGDRAIEFH 371
Query: 408 EKILSYCCDACIDLIGLVGD 427
++ D +D + + D
Sbjct: 372 RQVGRAARDLHLDALFVFAD 391
>gi|238060251|ref|ZP_04604960.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Micromonospora sp. ATCC 39149]
gi|237882062|gb|EEP70890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Micromonospora sp. ATCC 39149]
Length = 466
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/409 (31%), Positives = 194/409 (47%), Gaps = 25/409 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
T+ E+AE+V G+++ P ++ D+R F A G+ D H++ +
Sbjct: 5 TLAEVAEAVGGRLVAADPAALVTGPVEFDSR--KAGAGGLFVAFPGEKVDGHDYAA---- 58
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN--SRFSGV-LVGVTGS 140
G +V G V ++L M AR R + ++G+TGS
Sbjct: 59 -------AAVAGGAVAVLGTREVPGVPMVLVGDALDAMGRLARAVVDRLPALTVIGLTGS 111
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK +IA LG V G++NN +G + + D+ VLE G G G +
Sbjct: 112 SGKTTTKDLIAQLTVRLGPTVAPP-GSFNNELGHPWTALQADQDTRFLVLEKGARGVGHV 170
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L + P I VVLNVG +HL GS+E++A AKGE+ + + VLNADDPLV +
Sbjct: 171 RYLCEVVPPRISVVLNVGVAHLGEFGSVENIALAKGELVESLPADGLAVLNADDPLVDVM 230
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHLAINA 319
R V +G DVR V + G ++ E V+ + G H N+
Sbjct: 231 AARTAARVVRYGEAAHADVRAVDVTLDGRGRAAYTLVTPEGSAAVRLGL--TGRHQVSNS 288
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR-SGIKIVNDAYNANPISTRAAID 378
AAAAVA G+ LA++ +L V R + R G+ +++D+YNANP ST A+
Sbjct: 289 LAAAAVARELGMPLAELAAALGELGLVSTRRMDVFERPDGVTVIDDSYNANPASTAVALR 348
Query: 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
L + G+ V +LG M ELG ER+ H ++ + +D + +VG+
Sbjct: 349 ALAGMRGAGRAVAVLGYMAELGEYERQGHLEVGRLAAELGVDRLLVVGE 397
>gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna ATCC 53516]
gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Finegoldia magna ATCC 53516]
Length = 454
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 192/388 (49%), Gaps = 20/388 (5%)
Query: 26 IWTINEIAESV-NGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84
+ TI E+ ++ N K GI TDTR + K+ F A+ G +FD +I
Sbjct: 6 LKTITELTNTIINEKYHDIMVKGI-STDTRTIE--KDNMFIALRGDNFDGQNYIEMAFEK 62
Query: 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
V+ N D ++V+ NT ++++A S ++ +TGS GK+
Sbjct: 63 GASCCVVNRDYRNINDYPVIEVD-----NTKEFMMDLA-RGYISSLDCKVIAITGSNGKT 116
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK +++ L+ V ++ N+NN +G++ ++ ID ++AVLEMG GEI +L
Sbjct: 117 TTKDIMSSLLKE-KYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEISQLT 175
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264
+A P+I ++ N+GDSHL +L + E++ARAK EI + K + +LN DDP++ +
Sbjct: 176 NIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPVLREVKQEY 235
Query: 265 GV--RKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAA 322
+ + + FG + D R+ + G + + V F I G H NA +
Sbjct: 236 KLPEKTISFGIKPDSDYRMEMIKADETGSTFSI-----NDHV-FNIELLGHHQMYNATMS 289
Query: 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382
VA L G+ + V L MR+EL++ I+ND+Y +NP S + ++
Sbjct: 290 IIVAELMGLDYSDVAKGLKKIELTGMRNELIL-LDKFHILNDSYKSNPQSLTSCLETAYG 348
Query: 383 IACNGKRVVILGDMLELGSTERESHEKI 410
+ +++ +LGDMLELG E H+ I
Sbjct: 349 LHGYSRKIAVLGDMLELGDNEITLHKNI 376
>gi|440681553|ref|YP_007156348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena cylindrica PCC 7122]
gi|428678672|gb|AFZ57438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Anabaena cylindrica PCC 7122]
Length = 451
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 205/398 (51%), Gaps = 39/398 (9%)
Query: 32 IAESVNGKILKWGPPGI-ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGV 90
+A VN + GI + TDTRIL P + F A+ G+ FD H+F+ + +
Sbjct: 15 LANPVNVSVSALAQLGIGMQTDTRILQPG--EVFMALRGEKFDGHDFVEIAIAKGAIAAI 72
Query: 91 IGNQVCNNWDKGF--VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKS 148
+ N GF +QV+ +TL + +A + R+S F+ ++GVTGSVGK+TTK
Sbjct: 73 VDYDYKN---PGFPVLQVK-----DTLKAYQQIARWWRDS-FAIPVIGVTGSVGKTTTKE 123
Query: 149 MIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208
+IA L + G V ++YGN+NN +GV +L+ + D AV+EM M G+G+I EL ++A+
Sbjct: 124 IIAAVLATQG-RVHKTYGNFNNEIGVPKTLLELGAEDDFAVIEMAMRGRGQIAELTQIAK 182
Query: 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRK 268
P I V+ NVG +H+E LGS +A AK E+ E V +LN D PL+ K
Sbjct: 183 PTIGVITNVGTAHIELLGSELAIAEAKCELLAEMPGDSVAILNHDSPLLMETAARFWQGK 242
Query: 269 VFFGWRRGCDV--RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVA 326
V G D+ +L+ +V E ++ +P PG H AIN AA AVA
Sbjct: 243 VISYGFSGGDIQGKLIDNEVV------------EVAGMRLPLPLPGRHNAINFLAALAVA 290
Query: 327 TLFGVSLAQVGISLSNFSPVQM---RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
+ + SL N V M RS+ + I I+++ YNA P + AA+ LL D
Sbjct: 291 KVLEIDWK----SLQNGVVVNMPDGRSQRFTLPNDILILDETYNAAPEAMLAALQLLAD- 345
Query: 384 ACNGKR-VVILGDMLELGSTERESHEKILSYCCDACID 420
GKR + +LG M ELG+ + H+++ + +D
Sbjct: 346 -TPGKRKIAVLGAMKELGARSPQLHQQVGEMVQNLQLD 382
>gi|83592290|ref|YP_426042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodospirillum rubrum ATCC 11170]
gi|386349002|ref|YP_006047250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodospirillum rubrum F11]
gi|83575204|gb|ABC21755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodospirillum rubrum ATCC 11170]
gi|346717438|gb|AEO47453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Rhodospirillum rubrum F11]
Length = 488
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 185/388 (47%), Gaps = 21/388 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+C D+R + F A+ G+ D H + L ++ + VE
Sbjct: 39 VCIDSRAVV--AGDLFIALAGERTDGHAHVEAALTAGASAALVSRIPAGIATDRLLVVE- 95
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+TL L +A +R +RF+G LVGVTGS+GK+ TK M+ AL G V + GN
Sbjct: 96 ----DTLEGLWALARASR-ARFAGKLVGVTGSLGKTGTKEMLTQALGRFG-RVHATEGNL 149
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN G+ L+L + D+AV+E+GM+ GE+ LAR+ARP + ++ NV HLE S+
Sbjct: 150 NNHFGLPLTLARMPADTDLAVIELGMNHPGELGPLARLARPHVAIITNVAAVHLEFFDSV 209
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLV---ANLTVPRGVRKVF-FGWRRGCDVRLVAA 284
E +A AK EI + + G VLN D+ RG+ K FG G D R++
Sbjct: 210 EAIADAKAEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDKTLSFGNHIGADARVLDC 269
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
V G V ++ + + + G H A+N+ AV G+ + L+N
Sbjct: 270 AVDANGTAVFALIGDDPLAYRMAV--EGRHWALNSLGVLAVVRALGLDIHSAANGLANVV 327
Query: 345 PVQMR----SELLVSRSGIKIVNDAYNANPISTRAAIDLLK--DIACNGKRVVILGDMLE 398
P + R S L I++++DAYNA+P S AA+ L G+R+ +LGDMLE
Sbjct: 328 PPRGRGRRQSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMTRPGPRGRRIAVLGDMLE 387
Query: 399 LGSTERESHEKILSYCCDACIDLIGLVG 426
LG + H + + IDL+ G
Sbjct: 388 LGPQAAKLHADLAKISVERGIDLVYTAG 415
>gi|393759802|ref|ZP_10348614.1| putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161614|gb|EJC61676.1| putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 925
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 134/382 (35%), Positives = 196/382 (51%), Gaps = 15/382 (3%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+ TD+R L +K + F A++G+ FD H ++ + +G V I Q D + V G
Sbjct: 492 LSTDSRSL--SKGEVFLALSGEQFDGHRYLE-KAKEQGAVAAIVAQRDPGVDLPQI-VLG 547
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALES-LGVN-VFQSYG 166
+ T +L+++A R SRF ++GVTGS GK+TTK MIA L + LG + + G
Sbjct: 548 D----TRRALMSLATEWR-SRFDIPMIGVTGSNGKTTTKEMIAAILRAWLGESESLATRG 602
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +GV LS++ + AVLEMGM+ GEI LA M RP I ++ N H E +
Sbjct: 603 NLNNDLGVPLSILRLSAEHKAAVLEMGMNHPGEIAVLAAMVRPTIALINNAQREHQEFMH 662
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
S+E VAR G + V+ DD A G R V G + + AA +
Sbjct: 663 SVEAVARENGAVIDALPQDGALVIPDDDAFSAMWAERAGARAVLRFGLSGQET-VFAADM 721
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
+ VL + + SPG+H NA AAAA A G L + L +F PV
Sbjct: 722 FVEPAQTRFVLHVAGQSTALTLHSPGIHNLRNALAAAACAHAAGAPLTAIVQGLESFRPV 781
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
R + SG ++++D YNANP S RAAID+L + G++V++LG+M E+G E
Sbjct: 782 TGRMQPKQLSSGYQLIDDTYNANPDSVRAAIDVLAQL--KGRKVLVLGNMAEIGDNSSEL 839
Query: 407 HEKILSYCCDACID-LIGLVGD 427
H ++ +Y + +D L+ L GD
Sbjct: 840 HAEVGAYAKERGMDELLTLGGD 861
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 152/386 (39%), Gaps = 42/386 (10%)
Query: 40 ILKW-----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ 94
IL+W P +C D+R + FFA G H D E+ + +G V ++ Q
Sbjct: 6 ILEWLAQHVAPTANLCLDSRQI--KAGDAFFACRGYHGDGREY-EVQAVQQGAVAIVREQ 62
Query: 95 VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154
D G V V N++ L V + R S + +V VTG+ GK++T +A AL
Sbjct: 63 GDQTVDPG-VPVLQVPNLSALLGEVAHQWWGRPSE-AMTVVAVTGTNGKTSTVQWVASAL 120
Query: 155 E----------SLGVNVFQSYG-----NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
+LGV + + + V SL I RA + + S G
Sbjct: 121 NHSQVPCGTIGTLGVTLPDGSNLGGVLTTPDVLTVHRSLAAI-RAQGGNAVALEASSIG- 178
Query: 200 ILELARM--ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
LE R+ R +I N+ HL+ S+E +AK +F L V+NADD +
Sbjct: 179 -LEQGRLDGVRIDIAGFTNLTHDHLDYHHSMEAYKQAKLRLFSWPGLRS-AVVNADDAMG 236
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317
L +V DV L+A V G G L + + G H
Sbjct: 237 RELMQAGLAARVISYSMSQPDVDLLAQDVHTGADGQVFNLVTAHGTAQILTHLLGEHNVA 296
Query: 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG-------IKIVNDAYNANP 370
N A V G ++++ + V R +++ +S + +V+ A+ A+
Sbjct: 297 NLLLVAGVLQEVGWPVSKIARIMDKLESVPGRLQIVTPKSTAGRSPLPLVVVDYAHTADA 356
Query: 371 ISTRAAIDLLKDIA--CNGKRVVILG 394
+ A+ L+D+A GK + + G
Sbjct: 357 LER--ALQALRDVARVRGGKLICVFG 380
>gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
woodyi ATCC 51908]
gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
woodyi ATCC 51908]
Length = 455
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 204/408 (50%), Gaps = 27/408 (6%)
Query: 27 WTINEIAESVNGKILKWGPPGI-ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
T++ +++ +NG+++ + +C+D+R + P K F A+ G+ FD H+F L
Sbjct: 4 LTLSLLSQRLNGRLIGSDTEILNVCSDSRSI-PEKT-LFVALKGEKFDGHDFAHLALENG 61
Query: 86 GCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKST 145
++ ++ + + V +T ++ + Y + V +TGS GK++
Sbjct: 62 ASALLVSRELALDIPQLLVS-------DTQKAMGEIGAYLKE-LVQPKSVALTGSNGKTS 113
Query: 146 TKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205
K M+A L S V + GN+NN +GV L+L+ ++ + V E+G + GEI +
Sbjct: 114 VKEMVASIL-SQHHKVLYTAGNFNNEIGVPLTLLRLEGDEEYGVFELGANHLGEIDYTSS 172
Query: 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRG 265
+ +P++ +V NV +HLE GSLE VA+AK EIF + V+N DDP V RG
Sbjct: 173 LVKPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFNHLSADGIAVINLDDPFA---DVMRG 229
Query: 266 VRKVF----FGWRRGCDVRLVAAQVANGGLG-VQVVLEKEREMVKFVIPSPGLHLAINAC 320
F F DV+ A+++ + LG + L +P G H NA
Sbjct: 230 AASQFTQLTFAIESQADVK--ASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVSNAL 287
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSG-IKIVNDAYNANPISTRAAIDL 379
AA A+ G+SL +V L PV+ R +L G ++I++D+YNANP S AAID
Sbjct: 288 AATAICLSLGLSLEEVLSGLKLVEPVKGR--MLPHELGRVRIIDDSYNANPASVGAAIDW 345
Query: 380 LKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
L++I +G R ++LGD+ ELG H ++ Y ID + +G+
Sbjct: 346 LQEI--DGFRCLVLGDLGELGDNASLLHSELGEYAKKQGIDALFTLGE 391
>gi|419848606|ref|ZP_14371700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 1-6B]
gi|386407366|gb|EIJ22343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum 1-6B]
Length = 483
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 209/419 (49%), Gaps = 31/419 (7%)
Query: 28 TINEIAESVNGKILKWGPPGI------ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
++ EIA++V+G+++ G G +D+R P F AI G+ D H+F++
Sbjct: 5 SVEEIAKAVDGRLI--GDAGSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAKT 60
Query: 82 LYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVT 138
V ++ ++V ++ G Q+ V+ L L R + F ++G+T
Sbjct: 61 AGQGATVAIVDHEVKSD---GLPQIVVKDTVDALGELARYNIVRRRELDGDFD--IIGLT 115
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S G
Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIG 174
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V
Sbjct: 175 EIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVV 234
Query: 259 NLTVPRGVRKVFFGW--RRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316
+ ++FG + +VR + +++ + + PG H
Sbjct: 235 PMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNV 294
Query: 317 INACAAAAVATLFGV---SLAQVGISLSNFSPVQMRSELLVSRSG--IKIVNDAYNANPI 371
+NA AAA VA +G+ ++A++ S SP +M + V+R G +++D++NANP
Sbjct: 295 MNALAAATVAMRYGMAPETVARILASQHTISPHRM-ALSTVNREGTSFTLIDDSFNANPD 353
Query: 372 STRAAIDLLKDIACN-GK---RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
S +A ++ LK N GK RV +LG MLELG E H I +Y + ID I VG
Sbjct: 354 SMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGVDETALHTSIGTYAAELGIDAIIAVG 412
>gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
DSM 2075]
gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
DSM 2075]
Length = 466
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 195/395 (49%), Gaps = 23/395 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
+CTD+R +AP Q F A+ G++FD H+F+ L ++ ++GF
Sbjct: 29 VCTDSRTIAPG--QLFVALKGENFDGHDFVEKALQAGAAAALV--------ERGFNPTAA 78
Query: 109 NG---NVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
V+ + A + +V VTGS GK++TK MIA L V ++
Sbjct: 79 GQCLLRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMIAQVLGQR-FEVHKTK 137
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
GN NN +G+ L+L+ + + V EMGM+ GEI LA +ARP++ V+ NVG +HL L
Sbjct: 138 GNLNNHIGLPLTLLALRPEHQVCVAEMGMNAPGEIAYLAAIARPDVAVITNVGPAHLGPL 197
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQ 285
GS+E VA AK E+FQ V +N DDPL+A R + FG R A
Sbjct: 198 GSIEAVAAAKAELFQALGPEAVAAVNLDDPLLAPWADKLPCRVITFGLDPKAQAR--ARD 255
Query: 286 VANGGLGVQVVLE-KEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
V+ G +E ++ + + +PGLH NA AAAAV G+ Q+ + F+
Sbjct: 256 VSAFGSRQAFTMEIGDQPAERVRLAAPGLHNVRNALAAAAVGAGLGLEAWQIKDGVEAFT 315
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK-RVVILGDMLELGSTE 403
P + R E + ++ G +++D YNANP S A + L ++ GK +I+GDM ELG
Sbjct: 316 PTKGRLENVFTKGGPLLIDDTYNANPASVAAGLQSLAALSKWGKGHGLIMGDMGELGPEA 375
Query: 404 RESHEKI----LSYCCDACIDLIGLVGDRVVVQCK 434
H ++ + + C + +G + D VV +
Sbjct: 376 PRLHRQVGRQAVEFGCKFVL-AVGQMADEVVAGAR 409
>gi|384201238|ref|YP_005586985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Bifidobacterium longum subsp. longum KACC 91563]
gi|338754245|gb|AEI97234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase
[Bifidobacterium longum subsp. longum KACC 91563]
Length = 483
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 208/417 (49%), Gaps = 27/417 (6%)
Query: 28 TINEIAESVNGKILKWGPPGIICT----DTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
++ EIA++V+G+++ T D+R P F AI G+ D H+F++
Sbjct: 5 SVEEIAKAVDGRLIGDADSESRATNTVSDSRQAGPGS--VFVAIRGERVDGHDFVAKTAG 62
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVTGS 140
V ++ ++V ++ G Q+ V+ L L R + F ++G+TGS
Sbjct: 63 QGATVAIVDHEVKSD---GLPQIVVKDTVDALGELARYNIVRRRELDGDFD--IIGLTGS 117
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK +++ L ++G V G++NN +G+ L+ + +D V EMG S GEI
Sbjct: 118 VGKTTTKDLLSSLLATVGPTV-APVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEI 176
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L R+A P +VL VG +HL GS E +A+AK EI Q G VLNADD V +
Sbjct: 177 ARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPM 236
Query: 261 TVPRGVRKVFFGW--RRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
++FG + +VR + +++ + + PG H +N
Sbjct: 237 AGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMN 296
Query: 319 ACAAAAVATLFGV---SLAQVGISLSNFSPVQMRSELLVSRSG--IKIVNDAYNANPIST 373
A AAA VA +G+ ++A++ S SP +M + V+R G +++D++NANP S
Sbjct: 297 ALAAATVAMHYGMAPETVARILASQHTISPHRM-ALSTVNREGTSFTLIDDSFNANPDSM 355
Query: 374 RAAIDLLKDIACN-GK---RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+A ++ LK N GK RV +LG MLELG+ E H I +Y + ID I VG
Sbjct: 356 KAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVG 412
>gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
exigua ATCC 700122]
gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
exigua ATCC 700122]
Length = 473
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 193/386 (50%), Gaps = 14/386 (3%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN-- 109
D+R A + F A+ G D H+F + + ++ + + F + G
Sbjct: 33 DSR--AVEQGGAFLALKGARVDGHDFAGAAIAAGAALVIVTDDLPEQA-LAFAREAGCCI 89
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
V ++ A S +VGVTGSVGK+TT+ + A L S + GN+N
Sbjct: 90 ARVPDAQQALSALASAWREELSAHVVGVTGSVGKTTTRGLAAQVL-SARFKTESTKGNFN 148
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + + V+EMGM G+G+I LA +ARPE ++ NVG +HLE LG+ E
Sbjct: 149 NELGLPLTVLTAPKDCEALVVEMGMDGRGQIARLAAVARPERAIITNVGTAHLEYLGTRE 208
Query: 230 DVARAKGEIFQESKLGD-VCVLNAD----DPLVANLTVP-RGVRKVFFGWRRGCDVRLVA 283
++ARAK EI + G+ V L AD D ++ + + RG+R V FG G + A
Sbjct: 209 NIARAKAEIAEALPDGEGVAFLAADGEFTDFIIEHARLAERGIRVVRFGG-EGHASDVYA 267
Query: 284 AQVANGGLGVQV-VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+VA G VL + E + G H NAC AAA+ +G+SL V +L+
Sbjct: 268 TEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQNACGAAAIGLSYGMSLPDVCHALAG 327
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
R LL G ++++DAYNA+P S A++ +L + +G R+ +LGDM ELGS
Sbjct: 328 AQAQAGRQALLRMPEGYRLLDDAYNASPESMAASLSVLSSFSTSGSRIAVLGDMGELGSA 387
Query: 403 ERESHEKILSYCCDACIDLIGLVGDR 428
H+ + A ID + VG +
Sbjct: 388 SDAGHDSVGRAVAGAKIDALICVGPK 413
>gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoria sp. PCC 6506]
gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Oscillatoria sp. PCC 6506]
Length = 453
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 130/389 (33%), Positives = 205/389 (52%), Gaps = 40/389 (10%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNW-----DKGF 103
I TDTR L + F A+ G++FD H+F++ L +G I V +W D
Sbjct: 30 IATDTRNL--KGGEVFVALRGENFDGHKFVAKALE----LGAIAAVVDRSWESEGLDLPL 83
Query: 104 VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163
++VE +TL + +A + R+ +F+ ++ VTGSVGK+TTK +IA L + G NV +
Sbjct: 84 LRVE-----DTLKAYQAIARWWRD-QFNIPVIAVTGSVGKTTTKELIAAVLTTKG-NVLK 136
Query: 164 SYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223
+ N+NN +GV +L+ + + AV+EMGM GEI L ++ARP I V+ NVG +H+
Sbjct: 137 TQLNYNNEIGVPKTLLELSESHHYAVIEMGMRASGEIAFLTQIARPTIAVITNVGTAHIG 196
Query: 224 SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A+AK E+ E + +LN+D+ L+ KV+ G +A
Sbjct: 197 RLGSREAIAQAKCELLAEMPNDSIAILNSDNALLMATAA-----KVWQG-------ETLA 244
Query: 284 AQVANGGLGVQVVLEKEREM--VKFVIPSPGLHLAINACAAAAVATLFGVSLAQV--GIS 339
+ G L +++ ++ + + +P PG H A+N AA AVA + GVS + G+S
Sbjct: 245 YGLEKGNLCPELIDDRTISIDSINLPLPLPGRHNAVNYLAALAVAKVLGVSWEPLKGGLS 304
Query: 340 LSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR-VVILGDMLE 398
+ S R EL + I I+++ YNA S AA+ LL D GKR + +LG M E
Sbjct: 305 VDLPSGRAKRYEL---ANDIVILDETYNAGLESMIAALKLLAD--TPGKRHIAVLGTMKE 359
Query: 399 LGSTERESHEKILSYCCDACIDLIGLVGD 427
LG E H ++ + +D + ++ D
Sbjct: 360 LGERSLEFHRQVGEKARELNLDALFILAD 388
>gi|373947898|ref|ZP_09607859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
baltica OS183]
gi|386326254|ref|YP_006022371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
baltica BA175]
gi|333820399|gb|AEG13065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
baltica BA175]
gi|373884498|gb|EHQ13390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
baltica OS183]
Length = 460
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 188/366 (51%), Gaps = 19/366 (5%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F A+ G+ FD H+F + + ++ ++ + + V + ++ +
Sbjct: 39 LFVALKGERFDGHDFAATAIENGAAALMVERELAFDIPQLIVP-------DCQKAMGAIG 91
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
Y R+ + + + V +TGS GK++ K MIA L S + + GN+NN +GV L+L+ +
Sbjct: 92 AYVRD-QINPICVALTGSNGKTSVKEMIATIL-SAKHQILYTAGNFNNEIGVPLTLLRLT 149
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
A + + E+G + KGEI + + RP + +V NVG +HLE GS VA+AK EIF
Sbjct: 150 PADEFGIFELGANHKGEIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHL 209
Query: 243 KLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVR----LVAAQVANGGLGVQVVL 297
+ ++NADD ++V R +++ F + G R + AN + +L
Sbjct: 210 QADGTAIINADDAFADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFML 269
Query: 298 EKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357
E + V+P G H NA AAA+V G+SL ++ LS +PV+ R + S+
Sbjct: 270 NYSGESCQVVLPLAGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQ--PSQL 327
Query: 358 G-IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCD 416
G +++++D+YNANP+S AAI LK+I+ N R ++LGD+ ELG H ++
Sbjct: 328 GRVRLIDDSYNANPVSVGAAIAWLKEISEN--RCLVLGDLGELGDNAPLLHAELGQLAKQ 385
Query: 417 ACIDLI 422
ID +
Sbjct: 386 QGIDAL 391
>gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
Length = 463
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 183/374 (48%), Gaps = 17/374 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TDTR + + F AI G +FD H+F+ + +G V VI + F+ +
Sbjct: 27 INTDTRTI--KAGEVFLAIKGPNFDGHKFVE-QAVAQGAVAVIVDHSVKVQVPQFIVPDA 83
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNW 168
+ L + V + + +TGSVGK+T K M A L G V + GN+
Sbjct: 84 RLALGKLGAAVMAEVNPKT-------IAITGSVGKTTVKEMCAAILSQHG-EVLATKGNF 135
Query: 169 NNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSL 228
NN +GV L+L+ ++ AV+E+G + GEI + +P++ VV NV +H+E GSL
Sbjct: 136 NNDIGVPLTLLRLEPKHQYAVIELGANHIGEIAYTTDLVKPDVAVVCNVAAAHIEGFGSL 195
Query: 229 EDVARAKGEIFQESKLGDVCVLNADDPLVAN-LTVPRGVRKVFFGWRRGCDVRLVAAQVA 287
+ VA+AKGEIF K G + V+NAD P V LT F + DV +
Sbjct: 196 DGVAQAKGEIFSGLKAGGIAVINADSPYVDYWLTSLDKSTLCQFSMSQQLDVWPENIHLD 255
Query: 288 N-GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G G + ER V+ +P G H NA A A+ GV+LA V L++ V
Sbjct: 256 KLGRAGFDLCTPTERIAVQ--LPIAGKHNITNALIACALTLPLGVTLAHVAQGLASMPMV 313
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
Q R L+ + +++D YNAN S +A IDLL I G ++ GDM ELG+ R+
Sbjct: 314 QGRVNLIEVNDSLTVIDDTYNANVQSVKAGIDLLGQI--EGHQIFAFGDMGELGADARQY 371
Query: 407 HEKILSYCCDACID 420
HE++ Y ID
Sbjct: 372 HEEVGLYAQQKGID 385
>gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
KM20]
gi|414596568|ref|ZP_11446142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE E16]
gi|421876449|ref|ZP_16308006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE C10]
gi|421879171|ref|ZP_16310644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE C11]
gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
KM20]
gi|372557742|emb|CCF24126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE C10]
gi|390446970|emb|CCF26764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE C11]
gi|390482589|emb|CCF28203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Leuconostoc citreum LBAE E16]
Length = 444
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 182/364 (50%), Gaps = 23/364 (6%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F A+ +H D H +I L ++ +Q D + V +TL +L +
Sbjct: 37 LFVALVSEH-DGHLYIQQALANGAVAVLVDDQHAITPDIPAIIVP-----DTLLALQRLG 90
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
Y R + ++ +TGS GK+TTK M A A+ S F++ N+NN +GV ++L+ +
Sbjct: 91 QY-RREMVNPKVIAITGSNGKTTTKDMTA-AILSTKFKTFKTPENYNNEIGVPMTLLSMP 148
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
++ V+E+GM G++ L+ + P+I ++ +G++H+E + +++ARAK EI Q
Sbjct: 149 DDTEVLVVELGMDRPGQLTVLSHLVMPDIAIITMIGEAHIEFFQTRDNIARAKLEITQGL 208
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
K + ++ D+PL+ V + +FG + A L E++
Sbjct: 209 KSDGILLVPFDEPLLTQAAVKSD--RQYFGEKVS----------AIQALATVTTFTFEQQ 256
Query: 303 MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIV 362
KF IP G + +NA AA + L + L ++L NF + R+E LV+ G+ ++
Sbjct: 257 --KFAIPVMGRYNVMNALAAISAGKLLSIDLKHAALALKNFDLTKNRTERLVTSQGVVLI 314
Query: 363 NDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
+D YNANP + A + LK + ++ V+LGDMLELG+ H ++ D +D +
Sbjct: 315 SDVYNANPTAVAAVLSTLKSLPAR-RKYVVLGDMLELGTQANHLHAELGPKILDTDVDGV 373
Query: 423 GLVG 426
LVG
Sbjct: 374 YLVG 377
>gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 436
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 188/367 (51%), Gaps = 26/367 (7%)
Query: 62 QWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNM 121
+F + GQ+ D H++I + KG VG + N + V+ +T +LV +
Sbjct: 37 DFFIPLKGQNADGHQYIEDAI-EKGAVGYFSEKPLNFKNGILVK-------DTYQALVEV 88
Query: 122 ACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI 181
+ RN ++G+TG+ GK++TK ++ L +L + + + GN+NN +GV L+L I
Sbjct: 89 GKHKRNQ--VKAVIGITGTSGKTSTKELMNFVLSNLA-STYATQGNYNNEIGVPLTLANI 145
Query: 182 DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE 241
+D+ ++EMG G+I L +M +I V+++VG H+ GS E+V + KGEIF
Sbjct: 146 PENIDLTIIEMGAGKVGDIDYLGKMVNQDISVLVSVGHGHVGKFGSFENVIKGKGEIFN- 204
Query: 242 SKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER 301
GD VL ++ N P + +G ++R + V +G +G V++ +
Sbjct: 205 --CGDYSVLPSELKKFYNPKNP-----ITYGEDGDIEIRDIKI-VKDGTVG---VIKYKN 253
Query: 302 EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKI 361
+ ++ IP + + N A A V FG + L +F R E +++ I
Sbjct: 254 DKIELKIPVYNIGVFKNIGAVAGVLYHFGYDPIKNLEVLKDFKSSSGRGE-IINIGNFTI 312
Query: 362 VNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDL 421
++D+YNANP+S + AID+L + G ++ +LGDMLELG +E H +I + + ID
Sbjct: 313 IDDSYNANPLSVKNAIDILN--SMEGFKIFVLGDMLELGDYSQELHREIGKFLNVSYIDY 370
Query: 422 IGLVGDR 428
I L G+
Sbjct: 371 IMLYGNE 377
>gi|428217923|ref|YP_007102388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudanabaena sp. PCC 7367]
gi|427989705|gb|AFY69960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Pseudanabaena sp. PCC 7367]
Length = 465
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 140/429 (32%), Positives = 215/429 (50%), Gaps = 49/429 (11%)
Query: 17 TFRCPSNSPIWTINEIAESVNGKILKWGPPGI-----ICTDTRILAPNKNQWFFAITGQH 71
TF C TI + AE++N +++ P I TD+R + P Q F A+ G++
Sbjct: 2 TFSC-------TIAQAAEAMNAVVVESKPTNGQVIQGISTDSRQIKPG--QLFVALQGEN 52
Query: 72 FDAHEFISPELYGKGCVGVIGNQ----VCNNWDKGFVQVEGNGNVNTLNSLVNMACYARN 127
FD H F+ + +G V V+ N V + + Q+ + L C A
Sbjct: 53 FDGHRFVGSAI-AQGAVAVVVNHPIEMVVDQQGQPIAQLVVTDTLRAYQDLAQWWCAA-- 109
Query: 128 SRFSGV-LVGVTGSVGKSTTKSMIALALESL----GVNVFQSYGNWNNRVGVALSLIGID 182
+GV +V +TGS GK+TTK +IA AL L G V ++Y N+NN +GVA +L+ ID
Sbjct: 110 ---TGVPIVAITGSAGKTTTKELIA-ALLGLYVRPGKQVHKNYANYNNDIGVAHTLLAID 165
Query: 183 RAV-DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE 241
+ D AV+EM M G GEI L++MA P++ V+ N+G +H+ LGS + +A+AK E+ E
Sbjct: 166 PELHDFAVVEMAMRGLGEIARLSQMASPKVGVITNIGTAHIGRLGSKQAIAQAKCELLAE 225
Query: 242 SKLGDVCVLNADDPLVANLTVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300
+ VLNA+D L+ + +V +G G DVR G + +
Sbjct: 226 MPTDGIAVLNAEDQLLLDTAAQVWSGQVITYGLNSG-DVR--------GDWQGNTLSIGD 276
Query: 301 REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP--VQMRSELLVSRSG 358
R ++ +P G H A+N A +ATL + L IS + P RS++ S
Sbjct: 277 R---RWQLPLVGRHNALNFL--AGLATLKALGLDWQIISQTPIRPDMPSGRSQIHHLTSD 331
Query: 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDAC 418
I I+++ YNA+P +T AA++LL +R ILG M ELG+ E H ++ D
Sbjct: 332 ITILDETYNASPEATIAALELLAATTAK-RRWAILGTMKELGTKSAELHGQVGQKVADLG 390
Query: 419 IDLIGLVGD 427
ID + ++ D
Sbjct: 391 IDGLIVLAD 399
>gi|414174965|ref|ZP_11429369.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Afipia
broomeae ATCC 49717]
gi|410888794|gb|EKS36597.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Afipia
broomeae ATCC 49717]
Length = 478
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 198/398 (49%), Gaps = 24/398 (6%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISP 80
++P+WT +A+++ P I I D+R L P + +FAI G D H+F+
Sbjct: 2 SAPLWTSTAMAKAMQASTRGALPDAITGISIDSRTLTPG--EAYFAIKGDVHDGHDFVEA 59
Query: 81 ELYGKGCVGVIGNQVCNNW--DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
L + V+ + + D + V+ + L LV++ AR +R G ++ VT
Sbjct: 60 ALKNGAGLAVVSKAHADKFAPDARLLVVD-----DVLAGLVDLGRAAR-ARLGGKVIAVT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK++TK + L + G S ++NN GV L+L + A+ E+GM+ G
Sbjct: 114 GSVGKTSTKEALRAVLGAQG-ETHASVASFNNHWGVPLTLARCPASSRFAIFEIGMNHAG 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L +M RP + ++ V HLE +E +A AK EIF + G VLN D+P A
Sbjct: 173 EIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFLGVEPGGAVVLNRDNPQFA 232
Query: 259 NLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
LT + R V FG D RL+ + V + + + + I PG H
Sbjct: 233 RLTKSAKAAKIERIVSFGSDEKADARLIDVSLHPACSAVHASILGQD--ITYKIGMPGRH 290
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPI 371
+A+N+ A A A+L G LA ++L+ P +R L ++ +++++YNANP
Sbjct: 291 MAMNSLAVLAAASLAGADLALSALALAQLKPAAGRGVREVLTLTEGTATLIDESYNANPA 350
Query: 372 STRAAIDLL--KDIACNGKRVVILGDMLELGSTERESH 407
S +AAI +L + G+R+ +LGDMLELG+T + H
Sbjct: 351 SMKAAITVLGQASVGPRGRRIAVLGDMLELGATGPDLH 388
>gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
gi|167709672|gb|EDS20251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium sp. SS2/1]
gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[butyrate-producing bacterium SSC/2]
Length = 452
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 210/416 (50%), Gaps = 22/416 (5%)
Query: 28 TINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
TI +I E+ +G +L G P + + T++ + PN F I G+ DAH FI P
Sbjct: 5 TIQDILEATDGTLL-CGDPSMKIDHLSTNSMEIGPN--TLFVPIIGERVDAHIFI-PNAL 60
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+G + + + +++V +TL ++ +A Y RN + S ++GVTGSVGK
Sbjct: 61 KEGGACLTQEHTEASGNAPYIKVP-----DTLTAMQQIAAYYRN-KMSLPIIGVTGSVGK 114
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TT+ MIA L+ VF++ GN N++VGV L+L + +I VLEMGMS KG+I L
Sbjct: 115 TTTREMIAHVLKG-KYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTL 173
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP 263
+ P + VV NVG SH+E +GS +++ K +I V LN D+ ++
Sbjct: 174 GNIIHPNVGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDNDMIRKHIDY 233
Query: 264 RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323
F+G+ C R + G + +E + + G H NA AA
Sbjct: 234 VKKPYEFYGFAEDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNV--LGKHNVSNALAAI 291
Query: 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI 383
A+ + V ++ + LS FS + + ++ + +++DAYNA+P S +A++ +L +
Sbjct: 292 AIGLRYDVPMSAIKAQLSTFSG---QRQNIIHVNDYILIDDAYNASPDSMKASLSILSEF 348
Query: 384 ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD--RVVVQCKWRK 437
G+++ +L DMLELG E H+++ + + + + G+ R ++ W++
Sbjct: 349 KTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKE 404
>gi|415708592|ref|ZP_11462606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gardnerella vaginalis 6420LIT]
gi|415710326|ref|ZP_11463715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gardnerella vaginalis 6420B]
gi|388054491|gb|EIK77429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gardnerella vaginalis 6420LIT]
gi|388055566|gb|EIK78467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Gardnerella vaginalis 6420B]
Length = 529
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 214/438 (48%), Gaps = 45/438 (10%)
Query: 29 INEIAESVNGKILKWGP------PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
I+EIA +V+G++ ++ + +D+R + K F AI G+H D H+++
Sbjct: 25 ISEIANAVHGEMHEFNSCDTDLVANSVFSDSRQI--RKGSVFVAIVGEHVDGHDYVKNAE 82
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYAR---NSRFSGVLVGVTG 139
V ++ + V Q+ N +V L L R N F+ ++G+TG
Sbjct: 83 KSGAVVAIVEHVV---EGTNLNQIVVNNSVEALGLLAKHNLELRRNLNKPFT--IIGITG 137
Query: 140 SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGE 199
SVGK+TTK M+ L +LG V G++NN +G+ L+ + + + EMG + GE
Sbjct: 138 SVGKTTTKDMLKALLSTLGETV-APVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHVGE 196
Query: 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259
I L +A P++ +VL VG +HL GS+E +A+AK EI + + VLN+DD V+
Sbjct: 197 IANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDDKRVSA 256
Query: 260 LT----------VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIP 309
++ R + D +L A+ + G V ER ++
Sbjct: 257 MSCLVENKHVRWFGRNAKNGLLESASKDDYQLSASNIKLDSFGKAVFTITERINSSDLVN 316
Query: 310 SPGLHLAI-------NACAAAAVATLFGVSL---AQVGISLSNFSPVQMR-SELLVSRSG 358
+ +HLAI NA AAA VA G++L A V +S+ SP +M+ S + +
Sbjct: 317 NIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVSKNDEK 376
Query: 359 IKIVNDAYNANPISTRAAIDLL---KDIACNGK----RVVILGDMLELGSTERESHEKIL 411
+++D++NANP S +A ID L ++ +C+ R+ +LG MLELGS E E H I
Sbjct: 377 FTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDELHTNIG 436
Query: 412 SYCCDACIDLIGLVGDRV 429
Y ++ +D + VG +
Sbjct: 437 EYVANSSVDAVVAVGSKT 454
>gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri
ATCC 33323]
gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gasseri 202-4]
gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gasseri 224-1]
gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gasseri ATCC 33323]
gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gasseri 202-4]
gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gasseri 224-1]
Length = 455
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 196/410 (47%), Gaps = 37/410 (9%)
Query: 31 EIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
EIA+++N + G +I + D+R PN F + G D H+F+S + G
Sbjct: 7 EIAKALNSSV-NMGEDKVITSVVFDSRKATPN--SLFIPLAGVR-DGHDFVSNAM-ANGA 61
Query: 88 VGVIGNQVCNNWDKGF---------VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ W KG ++VE + L +L ++A Y + + +VG+T
Sbjct: 62 EATL-------WKKGHEGKPTDVPVIEVE-----DPLTALQSLAKYYL-GKVNPTVVGIT 108
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+A L + NV ++ N+NN +GV ++++ + + +I VLEMGM G
Sbjct: 109 GSNGKTTTKDMVAAVL-AKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPG 167
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
++ L+ + RP++ V+ +G++H+E G+ + +A AK EI K + N D+PL+
Sbjct: 168 QLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLE 227
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
K FG+R V + E +F IP G H N
Sbjct: 228 ERAAKIKQDKSTFGFREEDTVFATTFR----SYMHHATFEINDSEQQFKIPMIGKHNVSN 283
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA +V FG + Q+ +L+NF+P R + G I++D YN+NP + +A
Sbjct: 284 ALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDDVYNSNPTAVKAVTT 343
Query: 379 LLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ G+R+ +LGDMLELG E H + + A I+ + L G
Sbjct: 344 SFGQVMVQDGGRRIAVLGDMLELGDESAELHASLANALDPAIINELYLYG 393
>gi|395788416|ref|ZP_10467980.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella birtlesii LL-WM9]
gi|395408333|gb|EJF74944.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella birtlesii LL-WM9]
Length = 473
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 210/418 (50%), Gaps = 24/418 (5%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ +W + +VNG ++ P + D+R L FF I G H D H+F + +
Sbjct: 2 TALWDKQTLVAAVNGFVVGCIPENFSGVSIDSRTL--EAGDIFFCIKGYHLDGHDF-AQQ 58
Query: 82 LYGKGC-VGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
Y +G V ++ +K + + L +L +A AR R ++ +TGS
Sbjct: 59 AYERGAGVLIVAEDRLAEMEK--ISAPLIVVPDALQALEKLAKAARK-RSKAKIIAITGS 115
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
VGK+TTK + L ++G V + + NN GV L+L + D + E+GM+ K EI
Sbjct: 116 VGKTTTKEALKQVLATIG-KVHANIASLNNHWGVPLTLARMPAESDYGIFEIGMNHKDEI 174
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
L ++ P + ++ ++ +H+ +LE++A AK EIF+ V +LNAD+ + L
Sbjct: 175 RPLVKLVHPHVVLITHISAAHMGFFKNLEEIADAKAEIFEGLDDEGVALLNADNDFFSYL 234
Query: 261 TVPR---GVRKVF-FGWRRGCDVRLVAAQVANGGLGVQV-VLEKEREMVKFVIPSPGLHL 315
GV+K+ FG D ++ ++ + V +L K+RE+ I +PG H
Sbjct: 235 VQKAKQCGVKKILSFGENESSDYQVKNIRLLTDSSSMVVCILGKDREI---KIGAPGRHS 291
Query: 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSG-IKIVNDAYNANPI 371
N+ A AV GV L + +SLS+FS + +R L + G +++++YNANP
Sbjct: 292 VQNSLAVLAVCDAIGVDLEPIVLSLSHFSLQKGRGVRYRLALPSGGEFHLIDESYNANPA 351
Query: 372 STRAAIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S RAA++LL + NG+R+ ILGDMLELG + H +++ + +L+ L G+
Sbjct: 352 SMRAALNLLATGPVGKNGRRIAILGDMLELGVYSEKLHRDLVNPVHLSGANLVFLFGE 409
>gi|417859475|ref|ZP_12504531.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens F2]
gi|338822539|gb|EGP56507.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens F2]
Length = 468
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 187/391 (47%), Gaps = 23/391 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGN---QVCNNWDKGFVQ 105
I D+R + + FFAI G D H++ S + + V+ +
Sbjct: 20 ISIDSRTV--KAGEAFFAIKGDRVDGHDYASFAVANGASLLVVAEGKLPALGRLTVPMIV 77
Query: 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165
VE + L +L +A AR R S ++ VTGSVGK+TTK M+ AL G V +
Sbjct: 78 VE-----DVLAALGKLAIAARE-RTSARIIAVTGSVGKTTTKEMLRQALAPSG-RVHAAV 130
Query: 166 GNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL 225
++NN GV L+L + + V E+GM+ GEI L +M RP + ++ + +HL +
Sbjct: 131 ASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVKMVRPHVAIITTIAPAHLGNF 190
Query: 226 GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL---TVPRGVRKVF-FGWRRGCDVRL 281
++E++A AK EIF+ + G +LN D+ L +G+ + FG D RL
Sbjct: 191 KNIEEIASAKAEIFEGLEEGGSVILNRDNAQFEQLEEAAQEQGIEHILTFGQHAKADFRL 250
Query: 282 VAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341
+ G + +L E + + PG H+A NA A + G +L + +L
Sbjct: 251 ADFESTPTGSTIWAILNGETSELHLNV--PGRHIADNAMAVLGAVAITGANLDRAFEALG 308
Query: 342 NFSPVQ---MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC--NGKRVVILGDM 396
V+ R L + +++++YNANP S RAAI +L + +G+RV +LGDM
Sbjct: 309 TLEAVKGRGQRHRLTIESGSFLLIDESYNANPASMRAAIAVLAETETQGHGRRVAVLGDM 368
Query: 397 LELGSTERESHEKILSYCCDACIDLIGLVGD 427
LE+G + HE++ A I+ + L G+
Sbjct: 369 LEMGEFSAQLHEELAGPLLAAGIEHVWLAGE 399
>gi|420147754|ref|ZP_14655029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gasseri CECT 5714]
gi|398400901|gb|EJN54432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus gasseri CECT 5714]
Length = 455
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 196/410 (47%), Gaps = 37/410 (9%)
Query: 31 EIAESVNGKILKWGPPGIICT---DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGC 87
EIA+++N + G +I + D+R PN F + G D H+F+S + G
Sbjct: 7 EIAKALNSSV-NMGEDKVITSVVFDSRKATPN--SLFIPLAGVR-DGHDFVSNAM-ANGA 61
Query: 88 VGVIGNQVCNNWDKGF---------VQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ W KG ++VE + L +L ++A Y + + +VG+T
Sbjct: 62 EATL-------WKKGHEGKPTDVPVIEVE-----DPLTALQSLAKYYL-GKVNPTVVGIT 108
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GS GK+TTK M+A L + NV ++ N+NN +GV ++++ + + +I VLEMGM G
Sbjct: 109 GSNGKTTTKDMVAAVL-AKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPG 167
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
++ L+ + RP++ V+ +G++H+E G+ + +A AK EI K + N D+PL+
Sbjct: 168 QLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEPLLE 227
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
K FG+R V + E +F IP G H N
Sbjct: 228 ERAAKIKQDKSTFGFREEDTVFATTFR----SYMHHATFEINDSEQQFKIPMIGKHNVSN 283
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A AA +V FG + Q+ +L+NF+P R + G I++D YN+NP + +A
Sbjct: 284 ALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDDVYNSNPTAVKAVTT 343
Query: 379 LLKDIACN--GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426
+ G+R+ +LGDMLELG E H + + A I+ + L G
Sbjct: 344 SFGQVMVQDGGRRIAVLGDMLELGDESAELHASLANALDPAIINELYLYG 393
>gi|392391215|ref|YP_006427818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ornithobacterium rhinotracheale DSM 15997]
gi|390522293|gb|AFL98024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Ornithobacterium rhinotracheale DSM 15997]
Length = 426
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 188/383 (49%), Gaps = 28/383 (7%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I TD+R + K F A+ G++F+ + + + ++ N K VE
Sbjct: 16 ISTDSRKI--EKGDIFIALKGENFNGNAYAEKAIEQGAVAAIVDEAAFENMAKNIFLVE- 72
Query: 109 NGNVNTLNSLVNMACYARNSRFSGV-LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN 167
N+L L ++A + R G+ ++ +TGS GK+TTK +IA AL NV + GN
Sbjct: 73 ----NSLKFLQDLAHFHRKEL--GIKIISLTGSNGKTTTKELIAQAL-GAKFNVAFTQGN 125
Query: 168 WNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS 227
NN +GV L+L+ ++++ D+AV+EMG + EI +L +A P + N G +HLE GS
Sbjct: 126 LNNHIGVPLTLLSLNKSHDLAVVEMGANHPREIAQLCEIAAPNFGYITNFGKAHLEGFGS 185
Query: 228 LEDVARAKGEIFQESKLGD-VCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
E V +AK E++ + + +N DD + G+ + F + D + +
Sbjct: 186 EEGVVKAKSELYDFLRAHNGKAFINKDD--AKQIKQTNGMEIISFAFENEADYQYKRI-L 242
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSP--GLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
G GV E + +I S G + N AA +A FGV ++ ++ ++
Sbjct: 243 KEGKAGV--------EADETLIQSNLVGNYNQNNIAAATTIARYFGVEFPEIKKAIEAYN 294
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
P RS+ + ++G KI+ DAYNANP S A+ +G + V+LGDM ELG+
Sbjct: 295 PTINRSQ-TIEQNGKKIIMDAYNANPSSMEVALKHFS--YYDGTKAVVLGDMFELGAFSA 351
Query: 405 ESHEKILSYCCDACIDLIGLVGD 427
E H+K+ D D I L+G+
Sbjct: 352 EEHQKVAQLAKDLNFDEIFLIGE 374
>gi|261337516|ref|ZP_05965400.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium gallicum DSM 20093]
gi|270277915|gb|EFA23769.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Bifidobacterium gallicum DSM 20093]
Length = 535
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 126/406 (31%), Positives = 198/406 (48%), Gaps = 36/406 (8%)
Query: 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ 105
P + D+R ++ F AI G+H D H +++ ++ +++ + VQ
Sbjct: 42 PTNVVIDSR--QAHEGSLFVAINGEHADGHAYVATLGDSGALAAIVDHEIPQS---SVVQ 96
Query: 106 VEGNGNVNTLNSLVNMACYARNSR---------FSGVLVGVTGSVGKSTTKSMIALALES 156
+ + V L L R + FS +VG+TGSVGK+TTK ++ L
Sbjct: 97 LVVDDTVKALGELARHNLAQRRAMAAAHPDAAPFS--IVGITGSVGKTTTKDLLHALLGE 154
Query: 157 LGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLN 216
LG V G++NN +G+ L+ + + + + EMG + GEI L +A P++ VVL
Sbjct: 155 LGETV-APVGSFNNELGLPLTALQVGPSSRFLIAEMGANHLGEIANLTHIAPPDVAVVLK 213
Query: 217 VGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRGVRKVFFGWR 274
VG++HL GS+E +A+AK EI + G + +LNADDP VA + P VR +FG
Sbjct: 214 VGNAHLGEFGSVERIAQAKSEIVRGEVPGGMTILNADDPHVAAMDAIAPGLVR--WFGLE 271
Query: 275 RGCD----VRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFG 330
+ V ++ + G V + + + + + PG H +NA AA AVA FG
Sbjct: 272 HATEHDDYVTADHVRMDDDGHAVFTLRQSDGAYQQVRLGIPGAHNVMNALAATAVAQYFG 331
Query: 331 VSL---AQVGISLSNFSPVQMRSELL--VSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385
+ L QV + SP +M ++ R +++D++NANP S RA ID + A
Sbjct: 332 LPLRHIVQVLEQVRAISPHRMAISIVRRPERPEFTLIDDSFNANPDSMRAGIDGIA--AF 389
Query: 386 NGK----RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
N R+ +LG MLELG E HE I Y + +D + VG+
Sbjct: 390 NAAEPMLRIAVLGAMLELGPDETALHEAIGKYAVEQSVDAVIAVGN 435
>gi|440781904|ref|ZP_20960132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium pasteurianum DSM 525]
gi|440220622|gb|ELP59829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Clostridium pasteurianum DSM 525]
Length = 460
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 217/410 (52%), Gaps = 25/410 (6%)
Query: 29 INEIAESVNGKILKWGPP---GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85
++ I E+V GK+L G + DTR + P F AI G ++A+EF++ E K
Sbjct: 6 LSSIVEAVEGKLLIKGSKEAFNHVSIDTRKIEPG--SIFIAIKGDKYNANEFVA-EASKK 62
Query: 86 GCVGVIGNQVCN-----NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140
G I +++ + D + VE NT +L+ +A + R S +VG+TGS
Sbjct: 63 GAGLCIVDEIKFKEEDISKDTSIIIVE-----NTRKALLKLAEFYR-STLDIKIVGITGS 116
Query: 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEI 200
GK+TTK M A+ S VF++ GN+NN +G+ L + +D++ DIAVLEMGMS EI
Sbjct: 117 TGKTTTKDM-TYAILSQKYKVFKTEGNFNNEIGLPLMIFNLDKSYDIAVLEMGMSNFFEI 175
Query: 201 LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260
+A+ A+P+I ++ N+G SH+E+L + E + +AK EI +LN+D+ +++ +
Sbjct: 176 HNMAKAAKPDIALITNIGISHIENLKTREYILQAKLEITDYFNSNSTLILNSDNDMLSKV 235
Query: 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMV--KFVIPSPGLHLAIN 318
+ K+ D L A V V + ++ ++V F + PG H N
Sbjct: 236 NREDKIYKI-ISTSTESDCELKAENVKLKEAEVVFDISRDNKVVFEGFKVGLPGKHNISN 294
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378
A A A FG++ ++ + + MR +++ + IVND YNA+P S AAID
Sbjct: 295 ALLAIACGEAFGLTYEEMNRGMEGLNMTSMRLDIIKGKK-YTIVNDCYNASPDSMIAAID 353
Query: 379 LLKDIACNGKR-VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
+LK+I GKR + +LG M ELG ++H +I +Y +DL+ ++G+
Sbjct: 354 VLKNI--RGKRKIAVLGTMRELGEKAYDAHREIGTYAKKNSVDLLIVLGE 401
>gi|336394534|ref|ZP_08575933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus farciminis KCTC 3681]
Length = 453
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 190/380 (50%), Gaps = 17/380 (4%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI--GNQVCNNWDKGFVQV 106
+C D+R K FF + GQ D HEFI+ + G I + N D +V V
Sbjct: 27 VCFDSR--KAKKGDLFFPLQGQR-DGHEFINSAIEN-GVSATIWQSDHEIPNDDISYVVV 82
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E N + +A Y N + + ++ VTGS GK+TTK MIA L S NV ++
Sbjct: 83 E-----NVSEAFETLAKYYLN-KVNPKVIAVTGSNGKTTTKDMIAKVL-STSNNVAKTPQ 135
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N+NN +GV +++ + ++ V+EMGM G+I L+ +A P+I V+ +G++H+E G
Sbjct: 136 NFNNEIGVPFTILNMPINTEVLVVEMGMDRPGQINHLSSIANPDISVITMIGEAHIEFFG 195
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQV 286
+ + +A AK EI + V N D+PL+ R++ FG + L A ++
Sbjct: 196 TRDKIADAKMEITNHLQEDGTFVYNGDEPLLLERAKEVEQRQLTFGSHDTNN--LYATKI 253
Query: 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPV 346
G + V E ++F IP G + NA AA V + + +L +
Sbjct: 254 IPGKTTTKFVT-NEWPDLEFEIPMMGEYNVNNALAALLVGRASHIRPKAMQEALKDLFVT 312
Query: 347 QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES 406
+ R+E L +++G I++D YN+NP + + LK+I G+++++LGDMLELG R
Sbjct: 313 ENRTEWLKAKNGADILSDVYNSNPTAAIEVLHSLKEIPT-GRKLIVLGDMLELGDAARSL 371
Query: 407 HEKILSYCCDACIDLIGLVG 426
HE + + + + LVG
Sbjct: 372 HESLADHIDPKDFEKVYLVG 391
>gi|390562799|ref|ZP_10244968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrolancetus hollandicus Lb]
gi|390172627|emb|CCF84281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Nitrolancetus hollandicus Lb]
Length = 463
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 139/414 (33%), Positives = 210/414 (50%), Gaps = 27/414 (6%)
Query: 26 IWTINEIAESVNGKILKWGPPGI----ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ T+ ++ E G +L + I D+R + P F A+ G+ D H+F+
Sbjct: 1 MITLRDVIEGTGGSLLGDADRDLLLRRIRHDSRQVEPG--DLFIAVVGERLDGHDFLGQA 58
Query: 82 LY---GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
+ G V V VE NT+ +L ++A Y R + F +VG+T
Sbjct: 59 IERGAGAAMVDRAHAAALTGVPLPLVAVE-----NTVTALQHLAAYWRAT-FDVQVVGIT 112
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS-GK 197
GSVGK++TK +IA L S N +S G++NN +G+ LSL+ I D VLE+G +
Sbjct: 113 GSVGKTSTKEVIAGVL-SQRFNTVRSPGSFNNEIGLPLSLLDITPDTDAVVLEIGGAYAP 171
Query: 198 GEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257
GEI LA +ARP I VV NVG +HLE +GS+E +A K E+ V +LN DD V
Sbjct: 172 GEIKALAGIARPTIGVVTNVGHAHLERMGSIEAIAATKTELPASLPEDGVAILNGDDERV 231
Query: 258 ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL-GVQVVLEKEREMVKFVIPSPGLHLA 316
+ R VF+G C VR A V + GL G+ +L + E + +P G H A
Sbjct: 232 RAMADHCRCRVVFYGLAPDCQVR--ATDVESHGLEGISFILTFDGERHRIRVPLLGRHSA 289
Query: 317 INACAAAAVATLFGVSLAQVGISLSNFS--PVQMRSELLVSRSGIKIVNDAYNANPISTR 374
AA AV G+S+ ++ L F +Q+R + G +++D+YNA+P S
Sbjct: 290 HTVLAALAVGAELGMSIDEM---LPGFEDRAIQLRLLTVPGIGGSIVIDDSYNASPTSCL 346
Query: 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428
AA++LL D+ + + + + GD+LELGS E E H +I+ A + L+ +G R
Sbjct: 347 AALNLLDDLDAS-RSIAVFGDILELGSFEDEGH-RIVGRRAAAVVQLLFTIGPR 398
>gi|424780374|ref|ZP_18207248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Catellicoccus marimammalium M35/04/3]
gi|422843077|gb|EKU27523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate--D-alanyl-D-alanine ligase
[Catellicoccus marimammalium M35/04/3]
Length = 456
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 165/318 (51%), Gaps = 22/318 (6%)
Query: 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179
+A Y R + + ++V +TGS GK+TTK M A LE F++ GN+NN G+ +++
Sbjct: 92 QLAAYYRQ-KLNPMVVAITGSNGKTTTKDMCAAVLEQ-KYKTFKTQGNYNNEYGLPYTIL 149
Query: 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239
+ + VLEMGM G +I L ++A+P+ + +G+SH+E+LGS E +A+AK EI
Sbjct: 150 HMPTDTEALVLEMGMDGADQISLLTKIAQPDFAAITMIGESHIENLGSREGIAKAKWEIV 209
Query: 240 QESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDV--RLVAAQVANGGLGVQVVL 297
Q K VL D+PL+ +L ++FG + D+ +VA V
Sbjct: 210 QGLKEDGTIVLPFDEPLLRSLAQNISQSVLYFGLTKEADIWGEVVA------------VS 257
Query: 298 EKEREMV------KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE 351
+KE + + +P G + NA A A+ L V + + L +F + R+E
Sbjct: 258 QKETTFLSNLGSTEITLPIIGDYNVKNALIALAIGQLCEVPFSFMVQGLEHFKATKNRAE 317
Query: 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKIL 411
L ++G++I++D YNANP + + ID + ++V++LGDMLELG R H +
Sbjct: 318 WLEGKNGLEILSDVYNANPTAMKVIIDNFSQLETPKRKVLVLGDMLELGEDARLLHASVG 377
Query: 412 SYCCDACIDLIGLVGDRV 429
+ ID + L GD +
Sbjct: 378 EHIFPEQIDAVYLYGDLI 395
>gi|336313068|ref|ZP_08568011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Shewanella
sp. HN-41]
gi|335863188|gb|EGM68346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Shewanella
sp. HN-41]
Length = 460
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 185/365 (50%), Gaps = 17/365 (4%)
Query: 63 WFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMA 122
F A+ G+ FD H+F + + ++ ++ + + V + ++ +
Sbjct: 39 LFVALKGERFDGHDFAATAIENGATALMVERELPFDIPQLIV-------ADCQRAMGAIG 91
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
Y RN + + + V +TGS GK++ K MIA L S V + GN+NN +GV L+L+ +
Sbjct: 92 AYVRN-QVNPICVALTGSNGKTSVKEMIATIL-SAKHQVLYTAGNFNNEIGVPLTLLRLT 149
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
+ V E+G + KGEI + + RP++ +V NVG +HLE GS VA+AK EIF
Sbjct: 150 PKDEYGVFELGANHKGEIDYTSGLVRPQVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHL 209
Query: 243 KLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVR----LVAAQVANGGLGVQVVL 297
+ G ++NADD + V + +++ F + G R + + AN + +L
Sbjct: 210 QPGGTAIINADDAFADVMRVKAKQYKQLSFSQQEGAAKRHIDVIASGHKANKDGCYRFML 269
Query: 298 EKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357
E V+P G H NA AAA+V G+SLA + LS +PV+ R +
Sbjct: 270 NYLGESCPVVLPLAGRHQVSNALAAASVCIALGLSLADIASGLSQLTPVKGRMQ-PTQLG 328
Query: 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDA 417
I++++D+YNANP+S AAI LK+I+ N R ++LGD+ ELG H ++
Sbjct: 329 RIRLIDDSYNANPVSVGAAIAWLKEISEN--RCLVLGDLGELGDNAPLLHAELGQLAKQQ 386
Query: 418 CIDLI 422
ID +
Sbjct: 387 GIDAL 391
>gi|395789605|ref|ZP_10469115.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella taylorii 8TBB]
gi|395428443|gb|EJF94519.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
[Bartonella taylorii 8TBB]
Length = 476
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 205/419 (48%), Gaps = 26/419 (6%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPE 81
+ +W + +VNG + P I D+R LA + FF I G D H+F +
Sbjct: 2 TALWDKQALVAAVNGFFVGCVPENFSGISIDSRTLA--EGDIFFCIKGHRLDGHDFAAQA 59
Query: 82 -LYGKGCVGVIGNQVCN--NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVT 138
G G + V N++ + V + L +L +A AR R ++ +T
Sbjct: 60 CARGAGVLIVAENRLAEMEKISAPLIVVP-----DVLQALEKLAQAARK-RSKAKIIAIT 113
Query: 139 GSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG 198
GSVGK+TTK + L + G V + ++NN GV L+L + D + E+GM+ K
Sbjct: 114 GSVGKTTTKEALKQVLANFG-KVHANPASFNNCWGVPLTLARMPVESDYGIFEIGMNHKD 172
Query: 199 EILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258
EI L ++ RP I +V ++ H+ +LE++A AK EIF+ V +LNAD+ +
Sbjct: 173 EIRPLVKLVRPHIALVTHIAAGHMGFFKNLEEIADAKAEIFEGLDDEGVALLNADNDFFS 232
Query: 259 NLTVPR---GVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLH 314
L GV+K+ FG D + ++ + V + + + VK I +PG H
Sbjct: 233 YLVQKAKQCGVKKILSFGEAENSDYQARDIRLLTDYSSMIVRILGQDKGVK--IGAPGRH 290
Query: 315 LAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRS---ELLVSRSG-IKIVNDAYNANP 370
+ N+ A GV L V +SL++FS + R L + R G ++++++YNANP
Sbjct: 291 IVQNSLGVIAACDAIGVDLEPVFLSLNHFSLQEGRGVCYRLSLPRGGEFRLIDESYNANP 350
Query: 371 ISTRAAIDLLKD--IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
S RAA+DLL + NG+R+ ILGDMLELG+ + H +L C + + L G+
Sbjct: 351 ASMRAALDLLATGPVGENGRRIAILGDMLELGAYSEKFHRDLLKPICLSGAHTVFLFGE 409
>gi|359398447|ref|ZP_09191466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Novosphingobium pentaromativorans US6-1]
gi|357600138|gb|EHJ61838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Novosphingobium pentaromativorans US6-1]
Length = 498
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 197/427 (46%), Gaps = 31/427 (7%)
Query: 24 SPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
S +W IA +V G + D+R + P FFA+ G+ D H F+ +
Sbjct: 20 SALWDAVAIARAVKGTANAEFTVSGVEIDSRDVQPG--DLFFALKGESMDGHRFVE-MAF 76
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
KG V+ V D + V+ +T +L + AR R G ++GVTGSVGK
Sbjct: 77 AKGAAAVV---VDRPVDGPHILVK-----DTTEALEKLGAAARQ-RARGPIIGVTGSVGK 127
Query: 144 STTKSMIALALE-SLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
+ K I AL+ S + +S ++NN VGV LSL + + EMGM+ GEI
Sbjct: 128 TGVKESIFAALDRSSRGDAHRSVKSYNNHVGVPLSLARMPSRARFGIFEMGMNHAGEIAA 187
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL-- 260
L R RP + V+ + +H+E LGS E +A AK EIFQ + G V+ AD P L
Sbjct: 188 LTRQVRPHVAVITTIAPAHIEMLGSEEAIADAKAEIFQGLEEGGTAVIPADSPHFLRLRD 247
Query: 261 -TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
V G + V FG DVRL+ A GG G V ++ V + + +PG H +N+
Sbjct: 248 AAVACGAKVVSFGKAADADVRLLDTVSAIGG-GSLVTVDMGDRRVCYTVAAPGEHWVMNS 306
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLV---------SRSGIKIVNDAYN 367
A A L G++L+ + R E+ V R + +++++YN
Sbjct: 307 LAVMAAVRAVKGDLGAAGVALAEMGGLPGRGARVEIDVPGGEADDEGQRKAL-LIDESYN 365
Query: 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
ANP S RA + L +R+ +LG M ELGS + H + +A +D LVG+
Sbjct: 366 ANPASMRATLAQLGRTPAR-RRIAVLGAMKELGSHGPDYHAALAEPIREAGVDYAVLVGE 424
Query: 428 RVVVQCK 434
+ K
Sbjct: 425 EMAPLAK 431
>gi|333371331|ref|ZP_08463284.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desmospora sp. 8437]
gi|332976288|gb|EGK13148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Desmospora sp. 8437]
Length = 463
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 195/391 (49%), Gaps = 22/391 (5%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG--FVQV 106
+ TDTR L +N + + G+ FD H F + + +V D +QV
Sbjct: 30 VSTDTRTL--QRNNLYVPLKGERFDGHAFWMDAVRAGAAAALWNREVPLPKDPPIPLIQV 87
Query: 107 EGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166
E +TL +L +A R +VG+TGS GK+TTK + A A+ + V ++ G
Sbjct: 88 E-----DTLIALQELAAGYRRE-LEVKVVGITGSNGKTTTKDLTA-AILATRYRVHRTQG 140
Query: 167 NWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226
N NN +G+ L+L+ + ++AV+EMGM+ GEI L+++A P++ +V N+G++HLE LG
Sbjct: 141 NLNNHIGLPLTLLSMPPDTEVAVVEMGMNHAGEIARLSKIAAPDLALVTNIGEAHLEFLG 200
Query: 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV--PRGVRKVFFGWRRGCDVRLVAA 284
S +A AK EI + +++ D+PL+ R V +V FG D R++
Sbjct: 201 SRGAIADAKLEIREGMPSTGTLIIDGDEPLLRERLAGEERPVIRVGFG--ESNDDRILDL 258
Query: 285 QVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344
++ G G + +F G H A+NA A L G++ + L
Sbjct: 259 EL-KGRAG--IAFTSSATDTRFETGLMGKHNALNALLGIQAARLLGLTETGIREGLKGAE 315
Query: 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER 404
R E + +G+ +V+D+YNA+P + RAAID L + ++ V+LGDMLELG E
Sbjct: 316 GSGRRLETSTASNGMLVVDDSYNASPTAVRAAIDWLTSLEDYEEKWVLLGDMLELGVQEE 375
Query: 405 ESHEKILSYCCDACIDLIGLVGDRVVVQCKW 435
H ++ SY I + +G+R +W
Sbjct: 376 ALHREVGSYAVQQGIPRVFTLGER----ARW 402
>gi|429205510|ref|ZP_19196782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus saerimneri 30a]
gi|428146121|gb|EKW98365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Lactobacillus saerimneri 30a]
Length = 461
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 174/340 (51%), Gaps = 12/340 (3%)
Query: 64 FFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMA 122
F +TG+H D H +I G V + Q +G +E + L L
Sbjct: 41 FVPLTGEH-DGHNYIEAA-QANGAVATLWQQDHQGKRPQGIYTLEVADTLTALQQLAQYY 98
Query: 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID 182
+ N R +V VTGS GK+TTK M A L+ G NV ++Y N+NN++GV +++G++
Sbjct: 99 LHKINPR----VVAVTGSNGKTTTKDMTAAILQR-GYNVQKTYANFNNQIGVPTTILGME 153
Query: 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242
++ V+EMGM GE+ L+R+ P++ V+ +G++H+E G+ +A AK EI
Sbjct: 154 PNTEVLVVEMGMDHFGELDHLSRLVEPDVAVITMIGEAHIEFFGTRAKIADAKMEITHGL 213
Query: 243 KLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302
+ V N D+PL+ T FG +++ + +V+ E +
Sbjct: 214 AEDGLLVYNGDEPLLRQRTQKLIQATTTFGLNDEDNLQATNVVSDSHQTAFRVLKWPEYD 273
Query: 303 MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIV 362
F IP G + NA AA AV F + +A++ ++L +F+ + R+E + G +I+
Sbjct: 274 ---FTIPMIGAYNVNNALAALAVGDYFQIPVAEMQLALQDFALTKNRTEWVDGNQGERIL 330
Query: 363 NDAYNANPISTRAAIDLLK-DIACNGKRVVILGDMLELGS 401
+D YN+NP + + + + ++ GKR+V+LGDMLELG
Sbjct: 331 SDVYNSNPTAVKEVLAAFENNVTTTGKRIVVLGDMLELGE 370
>gi|406938041|gb|EKD71348.1| hypothetical protein ACD_46C00204G0002 [uncultured bacterium]
Length = 467
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 189/387 (48%), Gaps = 26/387 (6%)
Query: 49 ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEG 108
I DTR L P F AI G+ D H+FI ++ +V ++ + V+
Sbjct: 44 ISIDTRSLQPGN--LFVAIPGERVDGHDFIEAARQKGAAAALVTREVHSSLPQILVE--- 98
Query: 109 NGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL----ESLGVNVFQS 164
N + +L + + RN +F+ V VTGS GK+T K+MIA + E V +
Sbjct: 99 ----NVVPALGKLGAFWRN-QFNIPFVAVTGSNGKTTLKNMIAAIMIADCEGDESEVLAT 153
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
G NN +G+ L+L ++ AV+EMGM+ GEI LA + RP + V+ N +HLE
Sbjct: 154 IGTLNNHLGLPLTLTRLNEKHRYAVIEMGMNHFGEIDYLAHLTRPNVAVITNAASAHLEG 213
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV--RKVF--FGWRRGCDVR 280
LG L VARAK EIF + VLN DD A RG+ + F FG+ + D
Sbjct: 214 LGDLAGVARAKAEIFHGLQTNGTAVLNRDD---AFFNFWRGLVNQHPFLSFGFNKDAD-- 268
Query: 281 LVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340
+ A + + ++ L R + +P G H +N+ AA A A G+ L + L
Sbjct: 269 -ITATLHDADQSQRMTLRTPRGNIAVNLPLLGQHNILNSLAATAAAIAIGIDLITIKKGL 327
Query: 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELG 400
+ P R ++ +G+ I++D YNANP+S +AA++ L GK++++LGDM ELG
Sbjct: 328 ESVIPAPGRLQIHTLSNGVNIIDDTYNANPVSLQAAVEALSSFV--GKKILVLGDMKELG 385
Query: 401 STERESHEKILSYCCDACIDLIGLVGD 427
+ + H A ID + G+
Sbjct: 386 TDAKSLHHSAGEKIRLAGIDHLFTYGE 412
>gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
henselae str. Houston-1]
gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
henselae str. Houston-1]
Length = 473
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 123/397 (30%), Positives = 198/397 (49%), Gaps = 32/397 (8%)
Query: 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKG 86
+ I EI E+ +G I D+R L + FF I G H D H+F + + Y +G
Sbjct: 17 YAIGEIPETFSG----------ISIDSRTLI--EGDIFFCIKGHHLDGHDF-AVQAYERG 63
Query: 87 CVGVIGNQVCNNWDKGFVQVEGNGNV--NTLNSLVNMACYARNSRFSGVLVGVTGSVGKS 144
+I V N ++ V + L +L +A AR R ++ VTGSVGK+
Sbjct: 64 AAVLI---VAENRLADMEKISAPLIVVSDVLQALEKLAQAARK-RSKAKIIAVTGSVGKT 119
Query: 145 TTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELA 204
TTK ++ L ++G V + + NN GV L+L + + V E+GM+ K EI L
Sbjct: 120 TTKEVLKQVLATVG-KVHANSASLNNHWGVPLTLARMPVESNYGVFEIGMNHKDEIRPLV 178
Query: 205 RMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADD---PLVANLT 261
++ P + ++ ++ +H+ +LE++A AK EIF+ + VLNADD P +
Sbjct: 179 KLVHPHVVLITHISAAHMGFFKNLEEIADAKAEIFEGLDEEGIAVLNADDDFFPYLVQKA 238
Query: 262 VPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINAC 320
V+++ FG + D + ++ + V + + +K I +PG H+ N+
Sbjct: 239 KQCSVKRILSFGETKNSDYQAKDIRLLTDYSSMIVSISGQDRAMK--IGAPGRHIIQNSL 296
Query: 321 AAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSG-IKIVNDAYNANPISTRAA 376
A A GV L V +SLS FSP + +R L + G +++++YNANP S RAA
Sbjct: 297 AVIAACDAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESYNANPASMRAA 356
Query: 377 IDLLK--DIACNGKRVVILGDMLELGSTERESHEKIL 411
+DLL + G+R+ ILGDMLELG+ + H ++
Sbjct: 357 LDLLAIGPVGVEGRRIAILGDMLELGAYSEKLHRDLV 393
>gi|399090076|ref|ZP_10753915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Caulobacter sp. AP07]
gi|398028473|gb|EJL21984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Caulobacter sp. AP07]
Length = 462
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 130/407 (31%), Positives = 188/407 (46%), Gaps = 22/407 (5%)
Query: 23 NSPIWTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPEL 82
+ P+WT +EIA + +G+++ + D+R L P F A+TG D HEFI ++
Sbjct: 2 SEPLWTADEIAAATHGQVVGDFEATGVSIDSRSLEPG--DLFVALTGAR-DGHEFIV-QI 57
Query: 83 YGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142
KG G + V V VE +T L + AR VTGSVG
Sbjct: 58 TDKGAAGAL---VSKPVATPAVLVE-----DTFRGLERLGVAARERAPQARRGAVTGSVG 109
Query: 143 KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202
K++ + L G S ++NN +GV L+L + R AV E+GM+ EI
Sbjct: 110 KTSVTRAVEAGLRRAG-KAHASVKSYNNHIGVPLTLARMPRDTQRAVFEVGMNHADEITP 168
Query: 203 LARMARPEIRVVLNVGDSHLESLGSLED-VARAKGEIFQESKLGDVCVLNADDP---LVA 258
L+R RP + VG HLE+ E+ VARAK EIF + V VLNAD+P L+
Sbjct: 169 LSRFIRPHAVAITTVGPVHLENFADGEEGVARAKAEIFAGLEPAGVAVLNADNPWFPLLK 228
Query: 259 NLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAIN 318
G R FG G +L G V VL E + F I G+H +N
Sbjct: 229 AEAEKAGARVWSFGTGEGLTAQLTGFAANAEGATVIAVLRGE--TLSFPILQTGVHWGLN 286
Query: 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMR-SELLVSRSG--IKIVNDAYNANPISTRA 375
+ + V +L+ F P++ R +E ++ G +V+++YNANP+S +A
Sbjct: 287 SLCVLLMLEALDVDRETALAALAAFEPIEGRGAERVIKVPGGTFTLVDESYNANPVSMQA 346
Query: 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422
A+ L G+RVV+L DMLELG H + + A IDL+
Sbjct: 347 ALATLGARDVAGRRVVVLTDMLELGPKSARFHSDLATPIAAADIDLV 393
>gi|402829611|ref|ZP_10878485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
sp. CM382]
gi|402283607|gb|EJU32118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
sp. CM382]
Length = 473
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 189/386 (48%), Gaps = 14/386 (3%)
Query: 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGN-- 109
D+R A + F A+ G D H+F L + ++ + + F + G
Sbjct: 33 DSR--AVEQGGAFLALKGARVDGHDFAGAALAAGAALVIVTDDLPEQA-LAFAREAGCCI 89
Query: 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN 169
V ++ A S +VGVTGSVGK+TT+ + A L S + GN+N
Sbjct: 90 ARVPDAQQALSALASAWREELSAHVVGVTGSVGKTTTRGLAAQVL-SARFKTESTKGNFN 148
Query: 170 NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229
N +G+ L+++ + + V+EMGM G+G+I LA +ARPE ++ NVG +HLE LG+ E
Sbjct: 149 NELGLPLTVLTAPKDCEALVVEMGMDGRGQIARLAAVARPERAIITNVGTAHLEYLGTRE 208
Query: 230 DVARAKGEIFQESKLGD-VCVLNADDPLVANLT-----VPRGVRKVFFGWRRGCDVRLVA 283
++ARAK EI + G+ V L AD + RG+R V FG G + A
Sbjct: 209 NIARAKAEIAEALPDGEGVAFLAADGEFTEFIIEHARLAERGIRVVRFGG-EGHASDVYA 267
Query: 284 AQVANGGLGVQV-VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342
+VA G VL + E + G H NAC AAA+ +G+SL V +L+
Sbjct: 268 TEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQNACGAAAIGLSYGMSLPDVCHALAG 327
Query: 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402
R LL G ++++DAYNA+P S A++ +L + +G R+ +LGDM ELGS
Sbjct: 328 AQAQAGRQALLRMPGGYRLLDDAYNASPESMAASLSVLSSFSTSGSRIAVLGDMGELGSA 387
Query: 403 ERESHEKILSYCCDACIDLIGLVGDR 428
H+ + A ID + VG +
Sbjct: 388 SDAGHDSVGRAVAGAKIDALICVGPK 413
>gi|405354265|ref|ZP_11023645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase
[Chondromyces apiculatus DSM 436]
gi|397092508|gb|EJJ23266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanine ligase [Myxococcus
sp. (contaminant ex DSM 436)]
Length = 423
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 189/381 (49%), Gaps = 17/381 (4%)
Query: 65 FAITGQHFDAHEFISPELYGKGCVGVIGN-QVCNNWDKGFVQVEGNGNVNTLNSLVNMAC 123
A+ G+ FDAH F+ G V+ + +G+V E +TL +L +
Sbjct: 1 MALVGERFDAHAFVDVAAKGGAAGAVVARGRPLPALPEGWVLYEVE---DTLRALGALGR 57
Query: 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDR 183
+ R RF + V GS GK+TTK M+A L++ G ++ GN NN +GV L+L ++
Sbjct: 58 HHRQ-RFRIPVCAVGGSNGKTTTKEMVAAILDTRG-PALKTEGNLNNEIGVPLTLFRLEP 115
Query: 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243
AV+E+GM+ GEI LAR+ P+ V+ V HLE LGS+E VA A+GE+FQE
Sbjct: 116 RHVAAVIEVGMNQPGEIERLARVVLPDAGVITVVQPEHLEGLGSIEGVAAAEGELFQEMG 175
Query: 244 LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE- 302
G V+N DD L+ G +++ FG DVRL + V V RE
Sbjct: 176 HGTTIVVNVDDALIPAQAERSGAQRLTFGRAEHADVRLADVRTLGREGMVATVRHLGREW 235
Query: 303 --MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK 360
+ FV P H A NA AA AVA G + + L + P R ++ + G+
Sbjct: 236 PVRLHFVGP----HNAQNATAAFAVALALGYTPEECVRGLESARPYSRRLNVVDGQHGVT 291
Query: 361 IVNDAYNANPISTRAAIDLLKD-IACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419
+++D YNANP S AA++ L ++ G+ VV+LGDMLELG E E H + L +
Sbjct: 292 VIDDCYNANPASMDAALETLGTLVSAGGRAVVVLGDMLELGPGELEEHAR-LGGQVPSHA 350
Query: 420 DLIGLVGDRVVVQCKWRKWSM 440
L G R V W SM
Sbjct: 351 TLAAFFGPRSV--KSWESASM 369
>gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. JA-3-3Ab]
gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Synechococcus sp. JA-3-3Ab]
Length = 445
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 125/358 (34%), Positives = 181/358 (50%), Gaps = 26/358 (7%)
Query: 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFV 104
P +CTD+R L P F A+ G+ FD H+FI P+ KG V VI +
Sbjct: 25 PVQALCTDSRRLQPGSV--FVALRGERFDGHDFI-PQALSKGAVAVISQRPVEG---PHF 78
Query: 105 QVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164
QV +TL + +A A +FS +V +TGS GK+TTK M+A AL G +V +S
Sbjct: 79 QVP-----DTLTAYQRIA-RAWREQFSIPVVAITGSAGKTTTKEMLAAALSRYG-SVLKS 131
Query: 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES 224
N NN +GVA +L+ + AVLEM M G GEI LA+MARP ++ ++G +H+
Sbjct: 132 EANHNNDIGVAQTLLRLQPEHQFAVLEMAMRGPGEIRRLAQMARPTHALITHIGTAHIGR 191
Query: 225 LGSLEDVARAKGEIFQESKLGDVCVLNADDP-LVANLTVPRGVRKVFFGWRRGCDVRLVA 283
LGS E +A AK E+ QE G + VLN +DP L+A + + +G +G D+R
Sbjct: 192 LGSREAIAAAKCELLQELGQG-IAVLNGEDPLLLATAASLWSGKTLTYGLAQG-DLR--- 246
Query: 284 AQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343
Q V E + +P PG H A+N A G++ ++ L
Sbjct: 247 ---GEWDPQAQTV---TVEGLTLPVPLPGRHHALNWMGVLAAVRSLGLNWERLQEPLDLP 300
Query: 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401
P++ R+ L ++I ++ YNA+P + AA+ LL A +R ILG M ELG
Sbjct: 301 LPLEGRNRHLKLAGDVEIWDETYNASPEAMIAALHLLAQTAGK-RRWAILGPMRELGE 357
>gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium fabrum str. C58]
gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium fabrum str. C58]
Length = 477
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 197/413 (47%), Gaps = 19/413 (4%)
Query: 26 IWTINEIAESVNGKILKWGPPGI--ICTDTRILAPNKNQWFFAITGQHFDAHEFISPELY 83
+WT+ ++ G+ + P GI I D+R + + + FFAI G D H++ S +
Sbjct: 4 LWTVADMIAITAGRPVGNLPTGITGISIDSRTV--KQGEAFFAIKGDRVDGHDYTSFAVA 61
Query: 84 GKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGK 143
+ V+ + V + V + + + A R S ++ VTGSVGK
Sbjct: 62 NGASLLVVAEAKLPALGRLTVPMI---VVEDVLAALGKLALAARERTSARIIAVTGSVGK 118
Query: 144 STTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203
+TTK M+ AL G V + ++NN GV L+L + + V E+GM+ GEI L
Sbjct: 119 TTTKEMLRQALAPSG-RVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPL 177
Query: 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--- 260
+M RP + ++ + +HL + ++E++A AK EIF+ + G +LN D+ L
Sbjct: 178 VKMVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGSVILNRDNAQFEQLEEA 237
Query: 261 TVPRGVRKVF-FGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINA 319
G+ + FG D RL + G + +L E + I PG H+A NA
Sbjct: 238 AQEAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINI--PGRHIADNA 295
Query: 320 CAAAAVATLFGVSLAQVGISLSNFSPVQ---MRSELLVSRSGIKIVNDAYNANPISTRAA 376
A + G +L + +L V+ R L ++ +++++YNANP S RAA
Sbjct: 296 MAVLGAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAA 355
Query: 377 IDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427
I +L + +G+RV +LGDMLE+G + HE++ A I+ + L G+
Sbjct: 356 IAVLAETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGE 408
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,827,212,176
Number of Sequences: 23463169
Number of extensions: 286595071
Number of successful extensions: 766003
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6205
Number of HSP's successfully gapped in prelim test: 8429
Number of HSP's that attempted gapping in prelim test: 731987
Number of HSP's gapped (non-prelim): 17493
length of query: 440
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 294
effective length of database: 8,933,572,693
effective search space: 2626470371742
effective search space used: 2626470371742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)