Query 013570
Match_columns 440
No_of_seqs 309 out of 1830
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0770 MurF UDP-N-acetylmuram 100.0 3.4E-80 7.5E-85 626.8 43.9 395 26-433 2-401 (451)
2 PRK10773 murF UDP-N-acetylmura 100.0 3E-79 6.5E-84 631.8 46.0 389 27-431 4-397 (453)
3 PRK14093 UDP-N-acetylmuramoyla 100.0 8.9E-79 1.9E-83 632.1 45.5 395 24-430 4-412 (479)
4 TIGR01143 murF UDP-N-acetylmur 100.0 2E-76 4.4E-81 605.3 43.4 366 51-432 1-369 (417)
5 PRK11930 putative bifunctional 100.0 6.9E-72 1.5E-76 614.7 46.2 390 27-431 3-403 (822)
6 PRK11929 putative bifunctional 100.0 9.5E-70 2.1E-74 607.9 45.5 377 46-432 526-908 (958)
7 TIGR01085 murE UDP-N-acetylmur 100.0 1.6E-68 3.4E-73 554.4 38.3 364 46-429 4-396 (464)
8 PRK00139 murE UDP-N-acetylmura 100.0 1.1E-67 2.3E-72 547.0 40.3 357 45-431 14-389 (460)
9 PRK14022 UDP-N-acetylmuramoyla 100.0 2.1E-64 4.7E-69 525.1 39.2 351 46-429 34-405 (481)
10 PRK11929 putative bifunctional 100.0 1.1E-63 2.4E-68 559.0 42.0 366 45-428 28-421 (958)
11 COG0769 MurE UDP-N-acetylmuram 100.0 2.5E-58 5.5E-63 472.3 32.3 366 47-431 11-399 (475)
12 PRK03806 murD UDP-N-acetylmura 100.0 4.6E-46 9.9E-51 383.8 34.7 316 52-431 59-376 (438)
13 PRK01710 murD UDP-N-acetylmura 100.0 3.6E-46 7.7E-51 386.1 33.2 269 131-432 116-389 (458)
14 COG0773 MurC UDP-N-acetylmuram 100.0 1.7E-45 3.7E-50 366.2 36.1 296 100-426 90-388 (459)
15 PRK04663 murD UDP-N-acetylmura 100.0 5.7E-46 1.2E-50 382.7 33.9 268 132-430 108-376 (438)
16 PRK00421 murC UDP-N-acetylmura 100.0 7.7E-45 1.7E-49 376.7 37.2 279 132-427 107-387 (461)
17 PRK04308 murD UDP-N-acetylmura 100.0 6E-45 1.3E-49 376.1 35.8 269 131-430 109-380 (445)
18 TIGR01087 murD UDP-N-acetylmur 100.0 7.5E-45 1.6E-49 374.2 35.0 268 132-431 102-370 (433)
19 TIGR01081 mpl UDP-N-acetylmura 100.0 1.5E-44 3.2E-49 373.3 35.7 275 133-428 103-388 (448)
20 PRK02006 murD UDP-N-acetylmura 100.0 3.8E-44 8.3E-49 374.8 36.4 364 27-432 20-427 (498)
21 PRK03803 murD UDP-N-acetylmura 100.0 4.9E-44 1.1E-48 369.6 36.0 273 132-431 108-383 (448)
22 PRK00141 murD UDP-N-acetylmura 100.0 4E-44 8.6E-49 371.7 34.4 265 133-429 122-392 (473)
23 PRK03369 murD UDP-N-acetylmura 100.0 3.9E-44 8.4E-49 373.0 33.9 307 86-433 70-390 (488)
24 COG0771 MurD UDP-N-acetylmuram 100.0 2.8E-44 6.1E-49 361.3 31.5 277 124-432 103-383 (448)
25 PRK02705 murD UDP-N-acetylmura 100.0 5.6E-44 1.2E-48 370.5 34.3 273 131-431 108-387 (459)
26 TIGR01082 murC UDP-N-acetylmur 100.0 3.2E-43 7E-48 363.3 38.4 277 132-425 99-379 (448)
27 PRK01368 murD UDP-N-acetylmura 100.0 2E-43 4.4E-48 363.8 34.1 272 132-432 104-380 (454)
28 PRK14106 murD UDP-N-acetylmura 100.0 4.8E-44 1E-48 370.1 29.6 281 121-430 99-384 (450)
29 PRK01390 murD UDP-N-acetylmura 100.0 8.7E-44 1.9E-48 369.0 30.8 311 86-432 65-392 (460)
30 PRK01438 murD UDP-N-acetylmura 100.0 3.8E-43 8.2E-48 366.1 34.1 275 129-430 119-404 (480)
31 PRK02472 murD UDP-N-acetylmura 100.0 5.5E-43 1.2E-47 361.9 33.2 271 132-432 108-381 (447)
32 PRK00683 murD UDP-N-acetylmura 100.0 1E-43 2.2E-48 363.9 26.1 288 61-430 60-350 (418)
33 PRK04690 murD UDP-N-acetylmura 100.0 4.6E-42 1E-46 355.6 36.7 270 132-431 115-386 (468)
34 TIGR02068 cya_phycin_syn cyano 100.0 8.4E-43 1.8E-47 383.0 28.4 306 113-428 458-794 (864)
35 TIGR01499 folC folylpolyglutam 100.0 2E-42 4.4E-47 352.1 25.9 281 120-426 6-338 (397)
36 PRK14573 bifunctional D-alanyl 100.0 1.1E-40 2.3E-45 366.7 37.0 274 132-428 104-380 (809)
37 PLN02913 dihydrofolate synthet 100.0 1.8E-39 3.9E-44 337.9 28.1 296 113-427 60-431 (510)
38 PRK03815 murD UDP-N-acetylmura 100.0 8.6E-39 1.9E-43 324.0 29.4 248 132-430 89-336 (401)
39 PRK10846 bifunctional folylpol 100.0 3.2E-38 6.8E-43 322.9 28.1 278 119-426 36-356 (416)
40 COG0285 FolC Folylpolyglutamat 100.0 4.4E-36 9.5E-41 301.3 26.1 284 115-426 27-361 (427)
41 PF08245 Mur_ligase_M: Mur lig 100.0 3.2E-35 6.9E-40 268.9 17.4 186 137-326 1-188 (188)
42 PLN02881 tetrahydrofolylpolygl 100.0 1.4E-33 3.1E-38 289.8 28.5 279 113-428 44-423 (530)
43 PRK14016 cyanophycin synthetas 100.0 2.2E-31 4.7E-36 287.8 21.3 220 129-352 477-726 (727)
44 KOG2525 Folylpolyglutamate syn 99.9 2.5E-25 5.4E-30 220.6 17.9 275 113-426 55-405 (496)
45 PF02875 Mur_ligase_C: Mur lig 99.7 2.5E-16 5.5E-21 126.6 7.9 83 346-430 1-83 (91)
46 PF01225 Mur_ligase: Mur ligas 99.4 6.9E-15 1.5E-19 116.1 -3.1 71 46-124 2-81 (83)
47 COG1703 ArgK Putative periplas 93.6 1.3 2.8E-05 43.0 12.3 123 121-258 41-204 (323)
48 PF04613 LpxD: UDP-3-O-[3-hydr 93.0 0.24 5.3E-06 37.5 5.2 56 55-124 13-71 (72)
49 PF03308 ArgK: ArgK protein; 92.3 0.99 2.1E-05 43.0 9.3 123 119-255 17-179 (266)
50 PRK15453 phosphoribulokinase; 90.0 0.44 9.4E-06 46.1 4.6 30 130-159 3-34 (290)
51 PRK00892 lpxD UDP-3-O-[3-hydro 89.6 1.5 3.2E-05 43.9 8.4 85 26-125 2-91 (343)
52 TIGR03172 probable selenium-de 89.2 0.48 1E-05 44.6 4.1 33 134-166 1-33 (232)
53 COG1044 LpxD UDP-3-O-[3-hydrox 89.1 1.1 2.5E-05 44.0 6.8 87 26-127 3-94 (338)
54 PHA02519 plasmid partition pro 89.0 0.76 1.6E-05 46.8 5.8 50 113-162 86-139 (387)
55 PRK00652 lpxK tetraacyldisacch 89.0 2.1 4.6E-05 42.4 8.8 34 129-162 46-83 (325)
56 PRK13705 plasmid-partitioning 88.8 0.72 1.6E-05 47.0 5.5 50 113-162 86-139 (388)
57 TIGR03815 CpaE_hom_Actino heli 87.9 2.7 5.9E-05 41.5 8.8 72 73-162 52-126 (322)
58 PF08353 DUF1727: Domain of un 87.8 0.67 1.5E-05 38.5 3.7 64 367-430 2-65 (113)
59 TIGR01853 lipid_A_lpxD UDP-3-O 87.6 1.6 3.4E-05 43.4 6.9 80 31-125 1-84 (324)
60 PRK13869 plasmid-partitioning 86.8 0.92 2E-05 46.5 4.9 37 126-162 115-154 (405)
61 COG1763 MobB Molybdopterin-gua 86.6 0.9 1.9E-05 40.3 4.1 31 132-162 2-34 (161)
62 TIGR01007 eps_fam capsular exo 86.6 1.6 3.4E-05 40.0 5.9 34 129-162 14-50 (204)
63 COG1936 Predicted nucleotide k 86.3 0.85 1.8E-05 40.7 3.7 26 133-162 1-28 (180)
64 PRK14489 putative bifunctional 86.3 1.6 3.5E-05 44.0 6.3 52 111-162 183-237 (366)
65 PRK06696 uridine kinase; Valid 85.9 2.3 4.9E-05 39.7 6.7 46 116-161 5-53 (223)
66 TIGR03029 EpsG chain length de 85.8 2.3 5E-05 40.9 6.9 49 114-162 83-136 (274)
67 PF03205 MobB: Molybdopterin g 85.4 5 0.00011 34.6 8.1 30 133-162 1-32 (140)
68 TIGR03018 pepcterm_TyrKin exop 85.4 2.7 5.9E-05 38.6 6.9 34 129-162 32-69 (207)
69 cd02040 NifH NifH gene encodes 84.9 1.3 2.7E-05 42.4 4.5 30 133-162 2-33 (270)
70 cd01983 Fer4_NifH The Fer4_Nif 84.7 1.3 2.9E-05 34.3 3.9 40 135-194 2-43 (99)
71 cd02117 NifH_like This family 84.1 1.5 3.2E-05 40.5 4.5 29 134-162 2-32 (212)
72 PF00485 PRK: Phosphoribulokin 84.0 0.99 2.1E-05 41.1 3.2 27 134-160 1-29 (194)
73 COG2403 Predicted GTPase [Gene 83.9 1.3 2.7E-05 44.2 4.0 32 131-162 125-159 (449)
74 PRK05439 pantothenate kinase; 83.7 1.5 3.2E-05 43.2 4.5 38 119-156 72-112 (311)
75 COG4240 Predicted kinase [Gene 83.2 3.1 6.8E-05 38.9 6.0 49 113-162 32-83 (300)
76 PRK13232 nifH nitrogenase redu 83.2 1.7 3.6E-05 41.9 4.6 30 133-162 2-33 (273)
77 cd03109 DTBS Dethiobiotin synt 82.7 5 0.00011 34.2 6.9 63 141-219 10-79 (134)
78 COG0769 MurE UDP-N-acetylmuram 82.5 0.77 1.7E-05 48.0 2.1 96 130-227 62-161 (475)
79 COG0132 BioD Dethiobiotin synt 82.2 2.1 4.5E-05 40.1 4.6 31 132-162 2-35 (223)
80 TIGR03453 partition_RepA plasm 82.1 2 4.4E-05 43.6 5.0 35 128-162 100-137 (387)
81 PRK14494 putative molybdopteri 81.5 2.1 4.5E-05 40.3 4.4 31 132-162 1-33 (229)
82 TIGR03371 cellulose_yhjQ cellu 81.2 2.3 4.9E-05 39.9 4.7 31 132-162 1-34 (246)
83 PRK07667 uridine kinase; Provi 81.1 4 8.7E-05 37.1 6.1 30 132-161 17-48 (193)
84 cd02029 PRK_like Phosphoribulo 81.1 1.8 3.8E-05 41.7 3.7 28 134-161 1-30 (277)
85 PHA02518 ParA-like protein; Pr 80.7 2.4 5.1E-05 38.7 4.5 29 134-162 2-33 (211)
86 cd02042 ParA ParA and ParB of 80.7 16 0.00034 29.1 8.9 47 134-195 4-50 (104)
87 TIGR00554 panK_bact pantothena 80.3 1.8 4E-05 42.2 3.7 26 131-156 61-88 (290)
88 PRK13235 nifH nitrogenase redu 80.2 2.5 5.4E-05 40.7 4.6 30 133-162 2-33 (274)
89 PRK02261 methylaspartate mutas 80.0 29 0.00063 29.7 10.7 89 331-435 41-129 (137)
90 PRK09435 membrane ATPase/prote 80.0 5.4 0.00012 39.7 7.0 34 129-162 53-88 (332)
91 PRK13849 putative crown gall t 79.9 2.6 5.7E-05 39.6 4.5 30 133-162 2-34 (231)
92 PRK10037 cell division protein 79.8 2.6 5.6E-05 40.0 4.6 31 132-162 1-34 (250)
93 PRK13234 nifH nitrogenase redu 78.0 3.2 7E-05 40.5 4.7 32 131-162 3-36 (295)
94 PRK13230 nitrogenase reductase 78.0 3 6.5E-05 40.2 4.4 30 133-162 2-33 (279)
95 cd02033 BchX Chlorophyllide re 77.9 3.6 7.9E-05 40.9 5.0 33 130-162 29-63 (329)
96 PRK13185 chlL protochlorophyll 77.7 3.2 7E-05 39.7 4.5 30 133-162 3-34 (270)
97 COG2894 MinD Septum formation 77.3 2.6 5.6E-05 39.2 3.4 30 133-162 3-35 (272)
98 PRK14493 putative bifunctional 77.3 3.8 8.2E-05 39.7 4.8 29 132-161 1-31 (274)
99 COG0237 CoaE Dephospho-CoA kin 77.1 2.6 5.6E-05 38.8 3.5 27 132-162 2-30 (201)
100 TIGR02016 BchX chlorophyllide 77.0 3.4 7.3E-05 40.5 4.5 29 134-162 2-32 (296)
101 cd02032 Bchl_like This family 76.9 3.4 7.5E-05 39.5 4.5 29 134-162 2-32 (267)
102 cd03116 MobB Molybdenum is an 76.8 4.1 9E-05 36.0 4.6 31 132-162 1-33 (159)
103 PRK09270 nucleoside triphospha 76.5 6.2 0.00013 36.9 6.0 32 129-160 30-63 (229)
104 PRK00771 signal recognition pa 76.5 9.1 0.0002 39.6 7.6 31 132-162 95-127 (437)
105 TIGR01968 minD_bact septum sit 76.1 3.6 7.7E-05 38.9 4.3 30 133-162 2-34 (261)
106 TIGR00064 ftsY signal recognit 75.6 4.7 0.0001 39.0 5.0 32 131-162 71-104 (272)
107 KOG0780 Signal recognition par 75.4 20 0.00044 36.2 9.3 79 135-214 107-219 (483)
108 cd02028 UMPK_like Uridine mono 75.3 3.5 7.7E-05 37.0 3.8 28 134-161 1-30 (179)
109 PF06564 YhjQ: YhjQ protein; 75.2 3.2 7E-05 39.3 3.6 30 134-163 6-35 (243)
110 PF02606 LpxK: Tetraacyldisacc 75.0 15 0.00033 36.5 8.5 34 129-162 32-69 (326)
111 PRK14974 cell division protein 74.5 4.8 0.0001 40.2 4.9 32 131-162 139-172 (336)
112 COG0541 Ffh Signal recognition 74.2 12 0.00027 38.3 7.6 107 135-251 106-221 (451)
113 PRK11670 antiporter inner memb 74.1 4.5 9.7E-05 40.9 4.6 32 132-163 107-141 (369)
114 PF00448 SRP54: SRP54-type pro 74.0 3.2 6.9E-05 38.0 3.2 28 134-162 6-33 (196)
115 PRK00784 cobyric acid synthase 73.6 4.1 8.9E-05 42.9 4.4 29 133-161 3-34 (488)
116 PRK14495 putative molybdopteri 73.0 4.9 0.00011 41.4 4.6 31 132-162 1-33 (452)
117 PRK11889 flhF flagellar biosyn 72.6 46 0.001 34.2 11.2 31 132-162 241-273 (436)
118 TIGR01969 minD_arch cell divis 72.6 5.3 0.00011 37.5 4.5 29 134-162 2-33 (251)
119 PRK12723 flagellar biosynthesi 72.3 17 0.00038 37.0 8.4 111 133-254 175-297 (388)
120 cd02025 PanK Pantothenate kina 72.0 4.6 9.9E-05 37.7 3.9 23 134-156 1-25 (220)
121 cd02037 MRP-like MRP (Multiple 71.7 5 0.00011 35.4 3.9 26 138-163 8-33 (169)
122 TIGR01287 nifH nitrogenase iro 71.6 5.3 0.00012 38.4 4.3 29 134-162 2-32 (275)
123 COG0552 FtsY Signal recognitio 71.5 6.4 0.00014 38.9 4.8 33 132-164 139-173 (340)
124 TIGR01425 SRP54_euk signal rec 71.3 38 0.00082 35.0 10.6 31 132-162 100-132 (429)
125 COG0572 Udk Uridine kinase [Nu 70.8 4.5 9.7E-05 37.6 3.4 26 130-155 6-33 (218)
126 COG1618 Predicted nucleotide k 70.7 6.1 0.00013 35.0 4.0 31 133-163 6-38 (179)
127 PRK13231 nitrogenase reductase 70.4 3.2 7E-05 39.6 2.5 29 133-162 3-33 (264)
128 PRK10416 signal recognition pa 70.3 7.1 0.00015 38.7 4.9 31 132-162 114-146 (318)
129 TIGR00682 lpxK tetraacyldisacc 70.1 8.7 0.00019 37.9 5.5 38 129-166 25-67 (311)
130 TIGR00041 DTMP_kinase thymidyl 69.7 8.8 0.00019 34.5 5.2 32 132-163 3-36 (195)
131 TIGR00176 mobB molybdopterin-g 69.7 6 0.00013 34.7 3.9 29 134-162 1-31 (155)
132 COG3640 CooC CO dehydrogenase 69.7 6.4 0.00014 37.0 4.1 29 134-162 2-33 (255)
133 PRK13233 nifH nitrogenase redu 69.3 6.5 0.00014 37.7 4.4 30 133-162 3-35 (275)
134 PRK10751 molybdopterin-guanine 68.9 8.7 0.00019 34.5 4.8 32 131-162 5-38 (173)
135 KOG3347 Predicted nucleotide k 68.6 4.7 0.0001 35.2 2.8 23 132-154 7-31 (176)
136 PF01656 CbiA: CobQ/CobB/MinD/ 68.6 5.5 0.00012 35.6 3.5 30 134-163 3-32 (195)
137 PRK12726 flagellar biosynthesi 68.1 39 0.00085 34.4 9.6 32 131-162 205-238 (407)
138 CHL00175 minD septum-site dete 68.1 8 0.00017 37.2 4.8 31 132-162 15-48 (281)
139 PRK01906 tetraacyldisaccharide 68.0 12 0.00025 37.5 5.9 38 129-166 53-95 (338)
140 PRK10818 cell division inhibit 67.8 7.5 0.00016 37.1 4.5 30 133-162 3-35 (270)
141 PF06309 Torsin: Torsin; Inte 67.8 14 0.0003 31.3 5.4 43 118-160 38-83 (127)
142 PRK13236 nitrogenase reductase 67.6 8.4 0.00018 37.6 4.8 33 130-162 4-38 (296)
143 COG1072 CoaA Panthothenate kin 67.5 6 0.00013 38.1 3.5 29 132-160 82-112 (283)
144 PF13207 AAA_17: AAA domain; P 67.3 5.5 0.00012 32.7 3.0 25 134-161 1-27 (121)
145 cd02036 MinD Bacterial cell di 66.0 7 0.00015 34.4 3.6 28 135-162 5-32 (179)
146 COG3954 PrkB Phosphoribulokina 65.8 3.9 8.4E-05 37.2 1.8 33 129-161 2-36 (289)
147 COG1192 Soj ATPases involved i 65.8 8.9 0.00019 36.3 4.5 30 133-162 3-36 (259)
148 PRK12374 putative dithiobiotin 65.6 9.3 0.0002 35.8 4.5 29 134-162 4-35 (231)
149 PF01583 APS_kinase: Adenylyls 65.2 11 0.00023 33.3 4.5 32 132-163 2-35 (156)
150 COG0489 Mrp ATPases involved i 65.1 9.4 0.0002 36.7 4.5 33 131-163 56-91 (265)
151 TIGR00750 lao LAO/AO transport 64.7 35 0.00076 33.3 8.5 34 129-162 31-66 (300)
152 KOG2749 mRNA cleavage and poly 64.6 20 0.00043 35.9 6.5 50 113-162 84-135 (415)
153 COG1797 CobB Cobyrinic acid a, 64.2 16 0.00035 37.5 6.0 27 135-161 3-32 (451)
154 PF13500 AAA_26: AAA domain; P 64.0 9 0.00019 34.8 4.0 29 134-162 2-33 (199)
155 TIGR01281 DPOR_bchL light-inde 63.7 6.9 0.00015 37.4 3.3 25 138-162 8-32 (268)
156 PRK10867 signal recognition pa 63.4 68 0.0015 33.2 10.6 31 132-162 100-133 (433)
157 PTZ00451 dephospho-CoA kinase; 63.2 7.1 0.00015 37.1 3.2 28 132-162 1-30 (244)
158 PF10662 PduV-EutP: Ethanolami 63.0 34 0.00074 29.6 7.1 70 178-253 57-129 (143)
159 PRK01077 cobyrinic acid a,c-di 62.8 9.2 0.0002 39.8 4.2 31 132-162 3-36 (451)
160 CHL00072 chlL photochlorophyll 62.5 7.6 0.00016 37.9 3.4 28 135-162 3-32 (290)
161 KOG3022 Predicted ATPase, nucl 61.9 11 0.00024 36.3 4.2 31 132-162 47-80 (300)
162 PRK09841 cryptic autophosphory 61.7 18 0.00038 40.2 6.4 49 115-163 512-565 (726)
163 PF07015 VirC1: VirC1 protein; 61.7 12 0.00025 35.2 4.3 30 133-162 2-34 (231)
164 COG0125 Tmk Thymidylate kinase 61.6 9 0.00019 35.5 3.5 35 132-166 3-39 (208)
165 PF13614 AAA_31: AAA domain; P 61.5 11 0.00024 32.4 4.0 30 133-162 1-33 (157)
166 TIGR02880 cbbX_cfxQ probable R 61.5 7.1 0.00015 38.0 3.0 27 132-159 61-87 (284)
167 PRK00889 adenylylsulfate kinas 61.2 14 0.0003 32.7 4.7 31 131-161 3-35 (175)
168 cd01672 TMPK Thymidine monopho 61.0 14 0.00031 32.9 4.8 29 134-162 2-32 (200)
169 PRK03846 adenylylsulfate kinas 60.9 19 0.00041 32.7 5.5 33 130-162 22-56 (198)
170 TIGR00959 ffh signal recogniti 60.7 33 0.00072 35.4 7.8 30 133-162 100-132 (428)
171 PF01121 CoaE: Dephospho-CoA k 60.4 7.3 0.00016 35.1 2.6 25 134-162 2-28 (180)
172 PLN02924 thymidylate kinase 60.3 17 0.00036 34.0 5.1 35 128-162 12-48 (220)
173 TIGR01501 MthylAspMutase methy 60.0 96 0.0021 26.5 9.3 90 331-436 39-128 (134)
174 PRK00090 bioD dithiobiotin syn 59.8 13 0.00028 34.4 4.3 22 141-162 11-32 (222)
175 TIGR00455 apsK adenylylsulfate 59.6 20 0.00044 31.9 5.5 32 130-161 16-49 (184)
176 PRK05480 uridine/cytidine kina 59.4 11 0.00024 34.5 3.8 24 131-154 5-30 (209)
177 PRK08233 hypothetical protein; 59.3 8.9 0.00019 33.9 3.0 23 132-154 3-27 (182)
178 cd02034 CooC The accessory pro 59.1 12 0.00025 31.1 3.5 24 139-162 8-31 (116)
179 COG4917 EutP Ethanolamine util 58.8 90 0.002 26.6 8.5 71 180-257 60-133 (148)
180 PRK09453 phosphodiesterase; Pr 57.7 42 0.0009 29.9 7.2 68 359-429 3-74 (182)
181 PF02223 Thymidylate_kin: Thym 57.6 8.6 0.00019 34.4 2.7 27 141-167 7-33 (186)
182 PRK07933 thymidylate kinase; V 57.0 18 0.0004 33.4 4.8 31 134-164 2-34 (213)
183 TIGR00696 wecB_tagA_cpsF bacte 56.9 33 0.00071 30.8 6.2 64 366-436 54-117 (177)
184 PHA02239 putative protein phos 56.6 80 0.0017 29.7 9.1 70 359-430 3-72 (235)
185 TIGR00379 cobB cobyrinic acid 56.5 14 0.00031 38.3 4.4 84 135-218 4-120 (449)
186 PF07085 DRTGG: DRTGG domain; 56.3 40 0.00087 27.1 6.2 81 31-122 1-103 (105)
187 PTZ00301 uridine kinase; Provi 56.2 13 0.00028 34.4 3.6 53 329-382 152-205 (210)
188 PF09140 MipZ: ATPase MipZ; I 56.1 17 0.00036 34.7 4.3 30 134-163 2-34 (261)
189 COG3172 NadR Predicted ATPase/ 55.9 12 0.00025 33.3 2.9 23 132-154 8-32 (187)
190 PRK11519 tyrosine kinase; Prov 54.7 31 0.00067 38.2 6.9 50 114-163 506-560 (719)
191 PRK14491 putative bifunctional 54.7 18 0.0004 39.1 4.9 33 130-162 8-42 (597)
192 cd02023 UMPK Uridine monophosp 54.7 11 0.00024 34.2 2.8 21 134-154 1-23 (198)
193 cd02026 PRK Phosphoribulokinas 54.6 11 0.00023 36.5 2.8 26 134-159 1-28 (273)
194 cd01452 VWA_26S_proteasome_sub 54.2 56 0.0012 29.7 7.3 57 367-428 119-175 (187)
195 cd02024 NRK1 Nicotinamide ribo 54.2 10 0.00022 34.5 2.5 21 134-154 1-23 (187)
196 PRK05632 phosphate acetyltrans 54.0 71 0.0015 35.2 9.4 81 138-218 10-116 (684)
197 PRK00698 tmk thymidylate kinas 53.6 25 0.00055 31.6 5.1 31 132-162 3-35 (205)
198 cd07395 MPP_CSTP1 Homo sapiens 52.8 44 0.00095 31.7 6.8 65 365-429 28-97 (262)
199 TIGR00313 cobQ cobyric acid sy 52.5 14 0.00031 38.7 3.6 25 138-162 6-31 (475)
200 KOG3308 Uncharacterized protei 52.2 12 0.00027 34.3 2.7 24 132-155 4-29 (225)
201 COG0529 CysC Adenylylsulfate k 51.7 46 0.001 30.1 6.1 38 129-166 20-59 (197)
202 PF03808 Glyco_tran_WecB: Glyc 51.3 49 0.0011 29.4 6.4 63 367-435 55-117 (172)
203 KOG1324 Dihydrofolate reductas 51.2 48 0.001 29.8 6.1 54 341-395 61-118 (190)
204 PF13521 AAA_28: AAA domain; P 50.9 11 0.00024 33.0 2.1 24 135-162 2-27 (163)
205 PLN02796 D-glycerate 3-kinase 50.3 18 0.00039 36.2 3.7 49 113-161 77-131 (347)
206 PF01935 DUF87: Domain of unkn 50.2 16 0.00035 33.8 3.3 29 132-161 26-55 (229)
207 PRK14734 coaE dephospho-CoA ki 50.0 16 0.00035 33.4 3.2 26 133-162 2-29 (200)
208 PRK07429 phosphoribulokinase; 49.8 20 0.00042 35.7 3.9 28 131-158 7-36 (327)
209 PRK06547 hypothetical protein; 49.4 33 0.00071 30.6 5.0 25 130-154 13-39 (172)
210 TIGR00235 udk uridine kinase. 49.2 19 0.00042 32.9 3.6 25 131-155 5-31 (207)
211 PRK14709 hypothetical protein; 49.1 32 0.0007 36.0 5.6 43 113-155 185-230 (469)
212 PRK12377 putative replication 48.7 38 0.00082 32.2 5.6 30 133-162 102-133 (248)
213 cd02022 DPCK Dephospho-coenzym 48.1 20 0.00044 31.9 3.5 25 134-162 1-27 (179)
214 COG1245 Predicted ATPase, RNas 48.0 12 0.00026 38.7 2.1 80 73-155 42-125 (591)
215 PRK14723 flhF flagellar biosyn 47.1 99 0.0021 34.5 9.0 30 132-161 185-218 (767)
216 TIGR00152 dephospho-CoA kinase 46.9 16 0.00034 32.9 2.6 26 134-162 1-28 (188)
217 PLN02422 dephospho-CoA kinase 46.9 20 0.00042 33.8 3.2 26 133-162 2-29 (232)
218 PRK13973 thymidylate kinase; P 46.3 24 0.00052 32.5 3.8 32 133-164 4-37 (213)
219 cd03111 CpaE_like This protein 46.1 25 0.00054 28.4 3.4 45 137-194 7-52 (106)
220 PF13238 AAA_18: AAA domain; P 45.8 19 0.00041 29.4 2.8 14 141-154 9-22 (129)
221 cd02019 NK Nucleoside/nucleoti 45.7 23 0.0005 26.1 2.9 21 134-154 1-23 (69)
222 PRK13768 GTPase; Provisional 45.6 30 0.00065 32.9 4.4 29 134-162 4-34 (253)
223 cd03114 ArgK-like The function 45.4 27 0.00058 30.2 3.7 28 135-162 2-31 (148)
224 PF02374 ArsA_ATPase: Anion-tr 44.9 33 0.00071 33.7 4.6 30 133-162 2-33 (305)
225 TIGR01005 eps_transp_fam exopo 44.7 42 0.00092 37.3 6.0 34 129-162 543-579 (754)
226 PRK05569 flavodoxin; Provision 44.7 70 0.0015 27.0 6.2 48 370-420 66-113 (141)
227 PRK14731 coaE dephospho-CoA ki 44.1 22 0.00047 32.7 3.1 26 133-162 6-33 (208)
228 cd07388 MPP_Tt1561 Thermus the 43.8 1.5E+02 0.0032 27.8 8.6 69 358-430 6-74 (224)
229 TIGR00150 HI0065_YjeE ATPase, 43.8 46 0.001 28.4 4.8 38 113-154 7-46 (133)
230 TIGR02640 gas_vesic_GvpN gas v 43.7 23 0.0005 33.8 3.3 44 114-162 7-50 (262)
231 PRK14732 coaE dephospho-CoA ki 43.7 19 0.00041 32.9 2.5 19 134-152 1-21 (196)
232 cd07422 MPP_ApaH Escherichia c 43.7 1.1E+02 0.0023 29.4 7.8 65 360-430 2-66 (257)
233 PRK14730 coaE dephospho-CoA ki 43.6 26 0.00057 31.8 3.5 27 133-162 2-30 (195)
234 TIGR01613 primase_Cterm phage/ 43.6 48 0.001 32.3 5.6 18 138-155 84-101 (304)
235 COG1663 LpxK Tetraacyldisaccha 43.5 76 0.0017 31.5 6.8 34 129-162 44-81 (336)
236 PLN03046 D-glycerate 3-kinase; 43.1 33 0.00071 35.4 4.3 31 131-161 211-243 (460)
237 COG1428 Deoxynucleoside kinase 43.1 26 0.00056 32.5 3.3 23 132-154 4-28 (216)
238 PRK06703 flavodoxin; Provision 42.9 1.1E+02 0.0024 26.1 7.3 48 370-421 65-116 (151)
239 KOG3354 Gluconate kinase [Carb 42.7 23 0.0005 31.3 2.7 20 134-154 17-36 (191)
240 cd00477 FTHFS Formyltetrahydro 42.7 36 0.00078 35.7 4.6 33 130-162 36-74 (524)
241 TIGR00347 bioD dethiobiotin sy 42.6 28 0.0006 30.4 3.4 24 139-162 7-30 (166)
242 PRK00166 apaH diadenosine tetr 42.1 1.4E+02 0.003 28.9 8.4 66 359-430 3-68 (275)
243 PRK04040 adenylate kinase; Pro 42.0 27 0.00059 31.6 3.3 29 132-161 2-32 (188)
244 PRK14490 putative bifunctional 41.8 38 0.00082 34.2 4.7 32 130-162 3-36 (369)
245 COG3265 GntK Gluconate kinase 41.8 15 0.00033 32.1 1.5 18 136-154 2-19 (161)
246 cd07396 MPP_Nbla03831 Homo sap 41.8 68 0.0015 30.6 6.3 59 369-429 25-84 (267)
247 KOG0991 Replication factor C, 41.7 48 0.001 31.4 4.8 42 110-156 31-74 (333)
248 PRK05541 adenylylsulfate kinas 41.4 59 0.0013 28.6 5.4 32 130-161 5-38 (176)
249 PRK14733 coaE dephospho-CoA ki 41.4 26 0.00056 32.3 3.1 27 133-162 7-35 (204)
250 cd03115 SRP The signal recogni 41.2 45 0.00098 29.2 4.6 29 134-162 2-32 (173)
251 TIGR01033 DNA-binding regulato 41.1 1.5E+02 0.0032 28.0 8.2 61 319-380 49-116 (238)
252 PF01268 FTHFS: Formate--tetra 40.7 36 0.00079 36.0 4.3 35 129-163 51-91 (557)
253 KOG1805 DNA replication helica 40.6 35 0.00075 38.5 4.3 30 133-163 689-718 (1100)
254 smart00156 PP2Ac Protein phosp 40.4 3.4E+02 0.0074 26.0 11.3 71 357-430 28-98 (271)
255 PF07755 DUF1611: Protein of u 40.3 33 0.00072 33.6 3.8 171 61-240 34-252 (301)
256 PRK06731 flhF flagellar biosyn 40.2 2.5E+02 0.0054 27.1 9.8 31 132-162 75-107 (270)
257 PLN02974 adenosylmethionine-8- 40.1 40 0.00087 37.9 4.9 32 130-161 25-59 (817)
258 PRK13625 bis(5'-nucleosyl)-tet 39.9 1.7E+02 0.0036 27.6 8.5 69 359-430 3-78 (245)
259 cd00840 MPP_Mre11_N Mre11 nucl 39.8 1E+02 0.0022 27.9 7.0 58 370-429 27-87 (223)
260 PRK00081 coaE dephospho-CoA ki 39.7 29 0.00063 31.4 3.2 27 132-162 2-30 (194)
261 PRK13810 orotate phosphoribosy 39.7 26 0.00056 31.8 2.8 61 321-384 87-149 (187)
262 TIGR03499 FlhF flagellar biosy 39.6 41 0.00089 32.6 4.4 31 132-162 194-228 (282)
263 PF08433 KTI12: Chromatin asso 39.1 38 0.00082 32.7 4.0 31 132-162 1-33 (270)
264 cd07425 MPP_Shelphs Shewanella 39.0 1.7E+02 0.0037 26.8 8.2 69 361-430 2-79 (208)
265 COG4088 Predicted nucleotide k 38.9 37 0.00079 31.6 3.5 31 132-162 1-33 (261)
266 cd07421 MPP_Rhilphs Rhilph pho 38.8 2.2E+02 0.0047 28.0 9.0 71 359-430 4-79 (304)
267 PRK09968 serine/threonine-spec 38.6 1.7E+02 0.0037 27.0 8.2 74 349-430 5-80 (218)
268 cd03243 ABC_MutS_homologs The 38.4 33 0.00072 31.2 3.4 22 133-154 30-53 (202)
269 PRK00300 gmk guanylate kinase; 38.2 32 0.00069 31.1 3.2 24 131-154 4-29 (205)
270 PLN02348 phosphoribulokinase 38.1 50 0.0011 33.6 4.8 26 131-156 48-75 (395)
271 PRK13695 putative NTPase; Prov 37.8 51 0.0011 29.1 4.4 28 134-161 2-31 (174)
272 PF00580 UvrD-helicase: UvrD/R 37.7 27 0.00058 33.6 2.8 31 129-160 13-44 (315)
273 cd00009 AAA The AAA+ (ATPases 37.6 63 0.0014 26.3 4.8 44 116-161 5-50 (151)
274 PF00149 Metallophos: Calcineu 37.3 2.3E+02 0.005 23.2 9.0 70 359-430 3-77 (200)
275 COG4555 NatA ABC-type Na+ tran 37.1 32 0.00069 31.9 2.8 28 131-158 27-56 (245)
276 COG0556 UvrB Helicase subunit 36.9 40 0.00087 35.6 3.9 45 113-161 16-60 (663)
277 COG3367 Uncharacterized conser 36.7 46 0.001 32.8 4.1 79 75-161 87-180 (339)
278 cd07402 MPP_GpdQ Enterobacter 36.6 2.3E+02 0.005 26.0 8.9 58 370-429 24-81 (240)
279 cd03273 ABC_SMC2_euk Eukaryoti 36.5 44 0.00095 31.5 3.9 26 130-155 23-50 (251)
280 PRK06761 hypothetical protein; 36.4 31 0.00067 33.5 2.9 30 133-162 4-35 (282)
281 PRK05568 flavodoxin; Provision 36.3 88 0.0019 26.4 5.5 47 370-420 66-112 (142)
282 TIGR01854 lipid_A_lpxH UDP-2,3 36.2 1.6E+02 0.0035 27.3 7.7 70 360-429 2-79 (231)
283 TIGR01069 mutS2 MutS2 family p 36.2 3.6E+02 0.0078 30.3 11.5 27 133-159 323-353 (771)
284 KOG0635 Adenosine 5'-phosphosu 36.0 77 0.0017 27.9 4.9 44 130-174 29-74 (207)
285 COG4133 CcmA ABC-type transpor 35.8 41 0.00089 30.7 3.3 31 132-162 28-60 (209)
286 PRK06762 hypothetical protein; 35.8 42 0.0009 29.2 3.5 22 133-154 3-26 (166)
287 PRK03333 coaE dephospho-CoA ki 35.8 34 0.00073 35.0 3.2 20 133-152 2-23 (395)
288 PF13604 AAA_30: AAA domain; P 35.5 58 0.0012 29.6 4.4 31 133-163 19-51 (196)
289 PF09949 DUF2183: Uncharacteri 35.4 63 0.0014 26.1 4.1 26 386-414 63-88 (100)
290 COG2379 GckA Putative glycerat 35.2 3.9E+02 0.0085 27.2 10.2 99 321-430 210-319 (422)
291 COG1855 ATPase (PilT family) [ 35.0 29 0.00063 35.9 2.5 74 134-218 265-340 (604)
292 TIGR00668 apaH bis(5'-nucleosy 34.9 2E+02 0.0044 27.9 8.2 66 359-430 3-68 (279)
293 PRK01184 hypothetical protein; 34.8 54 0.0012 29.1 4.1 28 132-163 1-30 (184)
294 PRK13886 conjugal transfer pro 34.6 43 0.00092 31.8 3.4 26 138-163 11-36 (241)
295 cd02027 APSK Adenosine 5'-phos 34.6 67 0.0015 27.6 4.5 28 135-162 2-31 (149)
296 PF09565 RE_NgoFVII: NgoFVII r 34.6 1.9E+02 0.0041 28.3 8.0 75 353-432 5-82 (296)
297 PRK13507 formate--tetrahydrofo 34.5 47 0.001 35.3 4.0 33 130-162 61-99 (587)
298 TIGR02322 phosphon_PhnN phosph 34.4 40 0.00087 29.7 3.2 23 133-155 2-26 (179)
299 PF00005 ABC_tran: ABC transpo 34.4 35 0.00076 28.4 2.7 24 132-155 11-36 (137)
300 cd03223 ABCD_peroxisomal_ALDP 34.4 32 0.00069 30.2 2.5 25 131-155 26-52 (166)
301 PRK11148 cyclic 3',5'-adenosin 34.4 1.3E+02 0.0028 28.8 6.9 58 370-429 39-96 (275)
302 COG0595 mRNA degradation ribon 34.3 1.1E+02 0.0024 32.8 6.8 33 360-395 228-260 (555)
303 COG0455 flhG Antiactivator of 34.1 54 0.0012 31.5 4.2 30 132-161 2-34 (262)
304 PRK13506 formate--tetrahydrofo 34.0 52 0.0011 35.0 4.2 33 130-162 52-90 (578)
305 PRK13896 cobyrinic acid a,c-di 33.8 50 0.0011 34.2 4.1 28 134-161 3-33 (433)
306 cd02038 FleN-like FleN is a me 33.7 50 0.0011 28.0 3.5 51 134-194 4-54 (139)
307 cd06533 Glyco_transf_WecG_TagA 33.6 1.4E+02 0.0029 26.5 6.4 64 367-436 53-116 (171)
308 PF00186 DHFR_1: Dihydrofolate 33.6 31 0.00066 30.5 2.2 70 338-426 48-117 (161)
309 PF12780 AAA_8: P-loop contain 33.2 29 0.00062 33.5 2.1 48 101-154 8-55 (268)
310 PF12846 AAA_10: AAA-like doma 33.1 41 0.00088 32.0 3.2 29 133-162 5-33 (304)
311 PRK05340 UDP-2,3-diacylglucosa 33.1 2.6E+02 0.0057 26.0 8.7 71 359-429 3-81 (241)
312 TIGR01360 aden_kin_iso1 adenyl 33.0 51 0.0011 29.1 3.6 24 131-154 2-27 (188)
313 PRK13505 formate--tetrahydrofo 33.0 66 0.0014 34.2 4.8 32 131-162 54-91 (557)
314 PRK08181 transposase; Validate 32.9 94 0.002 29.9 5.6 47 115-163 93-139 (269)
315 PRK08099 bifunctional DNA-bind 32.9 62 0.0013 33.1 4.6 25 130-154 217-243 (399)
316 PRK06756 flavodoxin; Provision 32.6 2.2E+02 0.0049 24.1 7.5 53 369-421 65-117 (148)
317 cd00144 MPP_PPP_family phospho 32.5 1.6E+02 0.0034 26.9 6.9 66 361-430 2-67 (225)
318 cd07424 MPP_PrpA_PrpB PrpA and 32.4 2.3E+02 0.005 25.7 8.0 65 358-430 2-66 (207)
319 PRK06835 DNA replication prote 32.3 90 0.002 31.0 5.5 51 113-164 167-217 (329)
320 PLN02759 Formate--tetrahydrofo 32.3 64 0.0014 34.6 4.6 33 130-162 67-106 (637)
321 PRK06526 transposase; Provisio 32.0 69 0.0015 30.5 4.5 44 117-162 85-130 (254)
322 cd07423 MPP_PrpE Bacillus subt 31.9 3.4E+02 0.0073 25.2 9.2 70 358-430 2-79 (234)
323 cd03229 ABC_Class3 This class 31.9 32 0.0007 30.5 2.1 25 131-155 25-51 (178)
324 PRK06995 flhF flagellar biosyn 31.5 50 0.0011 34.7 3.7 31 132-162 256-290 (484)
325 PTZ00145 phosphoribosylpyropho 31.2 2.1E+02 0.0045 29.7 8.0 110 320-433 130-251 (439)
326 PF01709 Transcrip_reg: Transc 31.2 1.1E+02 0.0024 28.8 5.7 62 318-380 44-112 (234)
327 KOG3220 Similar to bacterial d 31.2 46 0.001 30.7 2.9 27 132-162 1-29 (225)
328 PRK05537 bifunctional sulfate 31.2 1.1E+02 0.0025 32.8 6.4 41 116-156 376-418 (568)
329 cd03255 ABC_MJ0796_Lo1CDE_FtsE 31.1 36 0.00077 31.2 2.3 24 132-155 30-55 (218)
330 PRK00131 aroK shikimate kinase 31.0 61 0.0013 28.1 3.7 23 132-154 4-28 (175)
331 PF06418 CTP_synth_N: CTP synt 30.9 53 0.0012 31.5 3.4 30 133-162 2-35 (276)
332 PRK08118 topology modulation p 30.8 58 0.0012 28.8 3.5 22 133-154 2-25 (167)
333 PRK12378 hypothetical protein; 30.7 2.6E+02 0.0057 26.4 8.0 62 319-380 47-113 (235)
334 COG1341 Predicted GTPase or GT 30.7 1.3E+02 0.0029 30.6 6.3 50 113-162 51-105 (398)
335 PF13555 AAA_29: P-loop contai 30.5 77 0.0017 23.2 3.5 22 133-154 24-47 (62)
336 PF01558 POR: Pyruvate ferredo 30.5 2.2E+02 0.0048 24.9 7.3 144 142-343 4-153 (173)
337 PRK04452 acetyl-CoA decarbonyl 30.5 1.7E+02 0.0037 29.0 7.0 45 369-425 138-182 (319)
338 cd03283 ABC_MutS-like MutS-lik 30.3 57 0.0012 29.7 3.5 29 133-161 26-58 (199)
339 PF13476 AAA_23: AAA domain; P 30.2 49 0.0011 29.3 3.0 24 132-155 19-44 (202)
340 PRK13889 conjugal transfer rel 30.2 56 0.0012 37.6 4.0 30 134-163 364-395 (988)
341 COG5271 MDN1 AAA ATPase contai 30.1 68 0.0015 39.2 4.5 39 114-154 450-488 (4600)
342 cd07413 MPP_PA3087 Pseudomonas 30.1 2.9E+02 0.0063 25.5 8.3 68 360-430 2-75 (222)
343 PRK02812 ribose-phosphate pyro 29.9 1.8E+02 0.0038 29.0 7.1 110 320-433 32-153 (330)
344 COG4109 Predicted transcriptio 29.9 37 0.00081 33.9 2.2 110 17-158 57-182 (432)
345 PRK00110 hypothetical protein; 29.9 2.6E+02 0.0057 26.5 7.9 63 318-380 48-116 (245)
346 PRK08154 anaerobic benzoate ca 29.8 97 0.0021 30.4 5.3 35 124-162 126-162 (309)
347 PRK05632 phosphate acetyltrans 29.7 2.5E+02 0.0054 31.0 8.9 87 27-124 202-318 (684)
348 cd01130 VirB11-like_ATPase Typ 29.6 99 0.0021 27.6 4.9 24 132-155 25-50 (186)
349 TIGR01420 pilT_fam pilus retra 29.6 2E+02 0.0043 28.7 7.5 23 132-154 122-146 (343)
350 PRK14722 flhF flagellar biosyn 29.5 4.8E+02 0.01 26.5 10.2 30 132-161 137-170 (374)
351 cd03226 ABC_cobalt_CbiO_domain 29.5 39 0.00085 30.6 2.3 24 131-154 25-50 (205)
352 COG1419 FlhF Flagellar GTP-bin 29.4 6.4E+02 0.014 25.9 11.4 105 113-223 182-296 (407)
353 COG1102 Cmk Cytidylate kinase 29.3 74 0.0016 28.4 3.8 26 134-162 2-29 (179)
354 KOG0447 Dynamin-like GTP bindi 29.3 45 0.00097 35.3 2.8 25 129-153 305-331 (980)
355 COG5623 CLP1 Predicted GTPase 29.2 83 0.0018 30.9 4.4 47 113-162 83-131 (424)
356 TIGR00336 pyrE orotate phospho 29.1 78 0.0017 28.1 4.1 28 356-384 108-135 (173)
357 PTZ00422 glideosome-associated 29.0 97 0.0021 31.6 5.1 40 389-429 28-68 (394)
358 cd03259 ABC_Carb_Solutes_like 28.9 40 0.00087 30.7 2.3 25 131-155 25-51 (213)
359 PRK06278 cobyrinic acid a,c-di 28.8 64 0.0014 33.9 3.9 27 131-157 237-266 (476)
360 PRK07261 topology modulation p 28.8 61 0.0013 28.7 3.3 20 135-154 3-24 (171)
361 PRK00409 recombination and DNA 28.8 8.7E+02 0.019 27.3 13.0 30 132-161 327-360 (782)
362 COG0856 Orotate phosphoribosyl 28.7 1.1E+02 0.0024 27.5 4.7 38 357-395 142-179 (203)
363 PRK13975 thymidylate kinase; P 28.4 62 0.0013 28.9 3.4 23 133-155 3-27 (196)
364 PRK06217 hypothetical protein; 28.4 58 0.0013 29.0 3.2 21 134-154 3-25 (183)
365 PRK13826 Dtr system oriT relax 28.3 60 0.0013 37.7 3.9 31 133-163 398-430 (1102)
366 PRK15177 Vi polysaccharide exp 28.2 50 0.0011 30.3 2.8 24 132-155 13-38 (213)
367 PRK02269 ribose-phosphate pyro 28.0 3.2E+02 0.0068 27.0 8.5 109 321-433 17-137 (320)
368 cd00550 ArsA_ATPase Oxyanion-t 28.0 55 0.0012 31.1 3.1 24 139-162 9-32 (254)
369 COG1131 CcmA ABC-type multidru 27.3 41 0.00088 32.8 2.1 27 132-158 31-59 (293)
370 PRK13976 thymidylate kinase; P 27.3 66 0.0014 29.7 3.4 30 135-164 3-36 (209)
371 cd04236 AAK_NAGS-Urea AAK_NAGS 27.2 1.6E+02 0.0034 28.5 6.0 65 325-395 8-76 (271)
372 PRK11439 pphA serine/threonine 27.2 1.6E+02 0.0034 27.2 5.9 65 358-430 18-82 (218)
373 PRK12727 flagellar biosynthesi 27.1 7.2E+02 0.016 26.7 11.2 31 131-161 349-383 (559)
374 cd03278 ABC_SMC_barmotin Barmo 27.0 63 0.0014 29.4 3.2 21 134-154 24-46 (197)
375 cd03294 ABC_Pro_Gly_Bertaine T 26.9 45 0.00098 31.9 2.3 25 131-155 49-75 (269)
376 PRK13537 nodulation ABC transp 26.9 40 0.00086 33.0 1.9 25 132-156 33-59 (306)
377 PF07931 CPT: Chloramphenicol 26.8 39 0.00085 30.3 1.7 22 133-154 2-25 (174)
378 PRK14964 DNA polymerase III su 26.8 3.2E+02 0.0069 28.9 8.7 21 134-154 37-59 (491)
379 cd01674 Homoaconitase_Swivel H 26.8 1E+02 0.0022 26.2 4.0 51 53-107 40-100 (129)
380 cd03222 ABC_RNaseL_inhibitor T 26.7 49 0.0011 29.7 2.3 26 131-156 24-51 (177)
381 COG0504 PyrG CTP synthase (UTP 26.7 79 0.0017 33.1 4.0 30 133-162 2-35 (533)
382 TIGR01166 cbiO cobalt transpor 26.6 45 0.00098 29.8 2.1 24 132-155 18-43 (190)
383 PRK10463 hydrogenase nickel in 26.5 1.8E+02 0.0039 28.4 6.3 42 113-154 83-128 (290)
384 cd03281 ABC_MSH5_euk MutS5 hom 26.4 91 0.002 28.7 4.1 29 133-161 30-62 (213)
385 KOG1970 Checkpoint RAD17-RFC c 26.3 95 0.0021 33.1 4.5 44 113-161 93-138 (634)
386 TIGR01313 therm_gnt_kin carboh 26.3 49 0.0011 28.6 2.2 19 136-154 2-22 (163)
387 COG4167 SapF ABC-type antimicr 26.3 62 0.0013 29.6 2.8 26 132-157 39-66 (267)
388 PRK09825 idnK D-gluconate kina 26.2 76 0.0016 28.3 3.5 23 132-154 3-27 (176)
389 cd02035 ArsA ArsA ATPase funct 26.0 80 0.0017 29.1 3.7 25 138-162 7-31 (217)
390 cd03113 CTGs CTP synthetase (C 25.7 96 0.0021 29.5 4.1 57 134-194 2-64 (255)
391 cd01131 PilT Pilus retraction 25.6 1.2E+02 0.0025 27.5 4.7 21 134-154 3-25 (198)
392 PRK10247 putative ABC transpor 25.6 61 0.0013 29.9 2.8 25 131-155 32-58 (225)
393 PLN02369 ribose-phosphate pyro 25.5 3.4E+02 0.0073 26.6 8.1 110 321-433 3-123 (302)
394 COG0566 SpoU rRNA methylases [ 25.5 3.9E+02 0.0085 25.5 8.4 69 61-141 108-193 (260)
395 TIGR01753 flav_short flavodoxi 25.4 1.6E+02 0.0036 24.3 5.3 48 371-421 64-113 (140)
396 TIGR01743 purR_Bsub pur operon 25.3 80 0.0017 30.4 3.6 64 319-384 140-221 (268)
397 smart00053 DYNc Dynamin, GTPas 25.2 1.2E+02 0.0025 28.8 4.6 25 129-153 23-49 (240)
398 cd03272 ABC_SMC3_euk Eukaryoti 25.1 85 0.0018 29.2 3.8 23 132-154 23-47 (243)
399 cd01453 vWA_transcription_fact 25.1 2.4E+02 0.0051 25.2 6.5 31 361-394 113-143 (183)
400 PRK07078 hypothetical protein; 25.0 1.2E+02 0.0026 33.9 5.3 41 113-154 471-515 (759)
401 cd02020 CMPK Cytidine monophos 25.0 68 0.0015 26.8 2.9 21 134-154 1-23 (147)
402 PF08303 tRNA_lig_kinase: tRNA 25.0 44 0.00096 29.7 1.7 19 135-154 5-23 (168)
403 PRK13812 orotate phosphoribosy 24.9 87 0.0019 28.0 3.6 63 320-384 71-134 (176)
404 cd03274 ABC_SMC4_euk Eukaryoti 24.8 79 0.0017 29.1 3.4 23 132-154 25-49 (212)
405 PRK11248 tauB taurine transpor 24.7 52 0.0011 31.2 2.3 24 132-155 27-52 (255)
406 COG1066 Sms Predicted ATP-depe 24.7 2.1E+02 0.0045 29.5 6.4 112 131-246 92-210 (456)
407 PRK13947 shikimate kinase; Pro 24.6 84 0.0018 27.3 3.5 25 134-161 3-29 (171)
408 PRK13946 shikimate kinase; Pro 24.6 83 0.0018 28.1 3.5 23 132-154 10-34 (184)
409 cd03232 ABC_PDR_domain2 The pl 24.5 73 0.0016 28.6 3.1 24 131-154 32-57 (192)
410 COG1089 Gmd GDP-D-mannose dehy 24.5 1.5E+02 0.0032 29.1 5.1 69 134-210 7-80 (345)
411 TIGR02173 cyt_kin_arch cytidyl 24.5 74 0.0016 27.5 3.1 25 134-161 2-28 (171)
412 cd03240 ABC_Rad50 The catalyti 24.4 90 0.002 28.5 3.7 23 132-154 22-46 (204)
413 PTZ00386 formyl tetrahydrofola 24.4 82 0.0018 33.7 3.7 33 130-162 66-105 (625)
414 cd03263 ABC_subfamily_A The AB 24.4 54 0.0012 30.0 2.2 23 132-154 28-52 (220)
415 PRK13540 cytochrome c biogenes 24.3 81 0.0017 28.5 3.4 24 131-154 26-51 (200)
416 PRK04296 thymidine kinase; Pro 24.3 1.3E+02 0.0029 26.9 4.8 30 133-162 3-34 (190)
417 PF03266 NTPase_1: NTPase; In 24.3 1.1E+02 0.0023 27.2 4.1 29 135-163 2-32 (168)
418 TIGR01251 ribP_PPkin ribose-ph 24.3 2.6E+02 0.0057 27.4 7.2 109 320-431 11-131 (308)
419 PF01695 IstB_IS21: IstB-like 24.2 85 0.0019 28.0 3.4 31 133-163 48-80 (178)
420 PRK04923 ribose-phosphate pyro 24.2 3.9E+02 0.0084 26.4 8.3 111 321-434 18-140 (319)
421 PRK05703 flhF flagellar biosyn 24.1 1.1E+02 0.0023 31.7 4.6 31 132-162 221-255 (424)
422 PRK00553 ribose-phosphate pyro 24.0 3.4E+02 0.0074 27.0 7.9 112 318-435 18-143 (332)
423 cd03260 ABC_PstB_phosphate_tra 23.9 83 0.0018 29.0 3.4 24 131-154 25-50 (227)
424 PRK01259 ribose-phosphate pyro 23.9 3.1E+02 0.0067 27.0 7.6 109 321-434 12-133 (309)
425 PRK10744 pstB phosphate transp 23.7 70 0.0015 30.3 2.9 24 131-154 38-63 (260)
426 cd07418 MPP_PP7 PP7, metalloph 23.7 5.9E+02 0.013 25.9 9.6 72 357-430 66-137 (377)
427 cd07416 MPP_PP2B PP2B, metallo 23.6 6.2E+02 0.014 24.8 9.6 71 357-430 43-113 (305)
428 PRK13652 cbiO cobalt transport 23.6 53 0.0012 31.5 2.1 25 131-155 29-55 (277)
429 PLN02318 phosphoribulokinase/u 23.6 83 0.0018 34.1 3.6 24 131-154 64-89 (656)
430 PRK12724 flagellar biosynthesi 23.5 1.3E+02 0.0028 31.2 4.8 31 132-162 223-256 (432)
431 cd03225 ABC_cobalt_CbiO_domain 23.5 61 0.0013 29.4 2.4 24 132-155 27-52 (211)
432 PF07693 KAP_NTPase: KAP famil 23.5 1.7E+02 0.0037 28.3 5.8 39 119-157 6-47 (325)
433 PF00142 Fer4_NifH: 4Fe-4S iro 23.5 85 0.0018 30.3 3.3 28 135-162 3-32 (273)
434 TIGR01752 flav_long flavodoxin 23.5 2.8E+02 0.0062 24.2 6.6 51 368-421 59-114 (167)
435 TIGR00017 cmk cytidylate kinas 23.4 87 0.0019 29.0 3.4 22 133-154 3-26 (217)
436 cd03256 ABC_PhnC_transporter A 23.4 62 0.0013 30.1 2.5 24 132-155 27-52 (241)
437 PRK10908 cell division protein 23.4 84 0.0018 28.8 3.4 24 131-154 27-52 (222)
438 cd03265 ABC_DrrA DrrA is the A 23.3 61 0.0013 29.7 2.4 23 132-154 26-50 (220)
439 PRK11890 phosphate acetyltrans 23.3 2E+02 0.0044 28.3 6.1 14 367-380 30-43 (312)
440 cd03293 ABC_NrtD_SsuB_transpor 23.2 53 0.0011 30.1 1.9 23 132-154 30-54 (220)
441 PRK04182 cytidylate kinase; Pr 23.1 79 0.0017 27.5 3.0 21 134-154 2-24 (180)
442 PRK09183 transposase/IS protei 23.0 1.2E+02 0.0026 28.9 4.4 31 133-163 103-135 (259)
443 PRK09493 glnQ glutamine ABC tr 23.0 85 0.0018 29.2 3.3 24 131-154 26-51 (240)
444 COG1474 CDC6 Cdc6-related prot 22.9 1.1E+02 0.0024 30.9 4.3 43 114-157 26-69 (366)
445 PRK07231 fabG 3-ketoacyl-(acyl 22.9 2.8E+02 0.0061 25.3 6.9 82 131-218 4-90 (251)
446 PRK09213 pur operon repressor; 22.8 68 0.0015 31.0 2.6 71 319-392 142-229 (271)
447 COG1922 WecG Teichoic acid bio 22.8 3.4E+02 0.0074 25.9 7.3 65 366-436 114-178 (253)
448 TIGR03608 L_ocin_972_ABC putat 22.8 63 0.0014 29.2 2.3 23 132-154 24-48 (206)
449 TIGR02673 FtsE cell division A 22.7 59 0.0013 29.6 2.2 24 131-154 27-52 (214)
450 cd03280 ABC_MutS2 MutS2 homolo 22.7 92 0.002 28.2 3.4 19 133-151 29-49 (200)
451 cd03221 ABCF_EF-3 ABCF_EF-3 E 22.7 89 0.0019 26.7 3.1 24 131-154 25-50 (144)
452 cd03237 ABC_RNaseL_inhibitor_d 22.7 65 0.0014 30.4 2.5 25 131-155 24-50 (246)
453 cd03231 ABC_CcmA_heme_exporter 22.7 58 0.0013 29.5 2.1 24 131-154 25-50 (201)
454 PRK10584 putative ABC transpor 22.7 65 0.0014 29.7 2.4 25 131-155 35-61 (228)
455 PF04851 ResIII: Type III rest 22.6 1.1E+02 0.0023 26.5 3.8 38 116-154 10-50 (184)
456 PF05872 DUF853: Bacterial pro 22.5 61 0.0013 33.7 2.3 30 132-162 22-51 (502)
457 COG2019 AdkA Archaeal adenylat 22.5 98 0.0021 27.8 3.3 22 311-332 143-164 (189)
458 cd03253 ABCC_ATM1_transporter 22.5 72 0.0016 29.5 2.7 25 131-155 26-52 (236)
459 COG4586 ABC-type uncharacteriz 22.4 63 0.0014 31.4 2.2 30 132-161 50-81 (325)
460 cd07399 MPP_YvnB Bacillus subt 22.3 4.1E+02 0.009 24.2 7.8 60 369-428 16-79 (214)
461 PRK00023 cmk cytidylate kinase 22.3 94 0.002 28.9 3.4 22 133-154 5-28 (225)
462 cd00227 CPT Chloramphenicol (C 22.2 1.1E+02 0.0023 27.0 3.7 23 132-154 2-26 (175)
463 COG0003 ArsA Predicted ATPase 22.2 1.3E+02 0.0028 29.9 4.5 105 133-241 3-120 (322)
464 TIGR00024 SbcD_rel_arch putati 22.2 2.7E+02 0.0058 26.0 6.5 40 388-428 60-99 (225)
465 KOG0541 Alkyl hydroperoxide re 22.2 2E+02 0.0044 25.4 5.0 48 386-437 42-98 (171)
466 PRK07308 flavodoxin; Validated 22.1 2.5E+02 0.0054 23.8 5.9 49 368-420 63-115 (146)
467 TIGR02770 nickel_nikD nickel i 22.0 66 0.0014 29.8 2.4 25 131-155 11-37 (230)
468 PRK14235 phosphate transporter 22.0 92 0.002 29.6 3.4 25 131-155 44-70 (267)
469 PRK05854 short chain dehydroge 21.9 2.7E+02 0.0058 27.1 6.7 88 129-219 11-103 (313)
470 PRK06197 short chain dehydroge 21.9 2.6E+02 0.0055 26.9 6.6 72 128-203 12-85 (306)
471 PRK14869 putative manganese-de 21.9 3.4E+02 0.0073 28.9 8.0 85 27-123 138-244 (546)
472 PF00006 ATP-synt_ab: ATP synt 21.8 1.5E+02 0.0034 27.4 4.7 50 376-430 5-54 (215)
473 cd07415 MPP_PP2A_PP4_PP6 PP2A, 21.8 5.9E+02 0.013 24.6 9.0 72 356-430 41-112 (285)
474 KOG2672 Lipoate synthase [Coen 21.8 1.5E+02 0.0033 28.7 4.6 40 389-430 256-295 (360)
475 PRK04220 2-phosphoglycerate ki 21.8 1.5E+02 0.0033 29.1 4.8 23 132-154 92-116 (301)
476 PRK13650 cbiO cobalt transport 21.8 64 0.0014 31.0 2.3 25 131-155 32-58 (279)
477 cd03269 ABC_putative_ATPase Th 21.8 95 0.0021 28.1 3.3 24 131-154 25-50 (210)
478 cd03250 ABCC_MRP_domain1 Domai 21.8 75 0.0016 28.7 2.6 25 131-155 30-56 (204)
479 cd03213 ABCG_EPDR ABCG transpo 21.7 67 0.0014 29.0 2.2 24 131-154 34-59 (194)
480 PRK14274 phosphate ABC transpo 21.6 99 0.0021 29.2 3.5 23 132-154 38-62 (259)
481 TIGR03263 guanyl_kin guanylate 21.6 82 0.0018 27.6 2.8 22 133-154 2-25 (180)
482 TIGR00486 YbgI_SA1388 dinuclea 21.5 2.8E+02 0.006 26.2 6.5 63 27-96 1-67 (249)
483 PRK09518 bifunctional cytidyla 21.5 88 0.0019 34.7 3.5 22 133-154 2-25 (712)
484 TIGR01650 PD_CobS cobaltochela 21.5 1.3E+02 0.0028 29.9 4.4 23 131-154 66-88 (327)
485 PLN02327 CTP synthase 21.4 2.1E+02 0.0046 30.6 6.1 30 133-162 2-35 (557)
486 TIGR02768 TraA_Ti Ti-type conj 21.3 1E+02 0.0023 34.3 4.0 29 134-163 373-401 (744)
487 PRK13538 cytochrome c biogenes 21.2 66 0.0014 29.1 2.2 25 131-155 26-52 (204)
488 PRK13900 type IV secretion sys 21.2 1.3E+02 0.0028 29.9 4.4 29 133-162 161-191 (332)
489 PRK05380 pyrG CTP synthetase; 21.2 1.1E+02 0.0025 32.4 4.0 31 132-162 2-36 (533)
490 cd03300 ABC_PotA_N PotA is an 21.1 69 0.0015 29.7 2.3 25 131-155 25-51 (232)
491 cd07414 MPP_PP1_PPKL PP1, PPKL 21.1 6.2E+02 0.013 24.6 9.0 71 357-430 50-120 (293)
492 TIGR00960 3a0501s02 Type II (G 21.1 70 0.0015 29.2 2.3 25 131-155 28-54 (216)
493 COG1926 Predicted phosphoribos 21.0 5E+02 0.011 24.1 7.6 58 357-427 125-182 (220)
494 PTZ00239 serine/threonine prot 21.0 6.1E+02 0.013 24.9 8.9 71 357-430 43-113 (303)
495 cd00267 ABC_ATPase ABC (ATP-bi 20.9 74 0.0016 27.4 2.3 24 132-155 25-50 (157)
496 cd02072 Glm_B12_BD B12 binding 20.9 5.2E+02 0.011 21.9 9.4 84 331-430 37-120 (128)
497 PRK11629 lolD lipoprotein tran 20.9 70 0.0015 29.6 2.3 23 132-154 35-59 (233)
498 PRK08533 flagellar accessory p 20.8 1.8E+02 0.0039 27.1 5.0 30 132-162 24-56 (230)
499 cd03258 ABC_MetN_methionine_tr 20.7 75 0.0016 29.4 2.4 24 132-155 31-56 (233)
500 PRK02458 ribose-phosphate pyro 20.7 4.8E+02 0.01 25.8 8.2 110 321-433 21-141 (323)
No 1
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.4e-80 Score=626.81 Aligned_cols=395 Identities=36% Similarity=0.571 Sum_probs=364.7
Q ss_pred ccCHHHHHHHhCCeecccC--CCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCCCCce-
Q 013570 26 IWTINEIAESVNGKILKWG--PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG- 102 (440)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~--~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~~~~~- 102 (440)
+|++.+++.++++.+.+.. .++++++|||.+.+ |++|+|++|+++|||+|+++|++ +||.+++++++.+.+..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Dsr~v~~--g~lF~al~G~~~Dgh~fi~~A~~-~GA~a~~v~r~~~~~~~~~ 78 (451)
T COG0770 2 LLTLDELADILGGALVGADPVVVSGVSIDSRKVKP--GDLFVALKGERFDGHDFIEQALA-AGAAAVLVARPVLPPAIPL 78 (451)
T ss_pred cccHHHHHHHhCCccccCcccceeeEEeecccCCC--CceeEEccCccccccchHHHHHh-cCCEEEEEecCcCCccccc
Confidence 4799999999999988765 38999999999999 99999999999999999999999 999999999987755566
Q ss_pred -EEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcc
Q 013570 103 -FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI 181 (440)
Q Consensus 103 -~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~ 181 (440)
++.|. |++.||++|+.+|+. ..+.++|+||||+|||||++|++++| +..++++.|.||+||++|+|++++++
T Consensus 79 ~~~~V~-----d~~~al~~la~~~~~-~~~~kvIaITGS~GKTTTKe~la~iL-~~~~~v~~t~gn~Nn~iGlPltll~~ 151 (451)
T COG0770 79 VVLLVL-----DTLEALGKLAKAYRQ-KFNAKVIAITGSNGKTTTKEMLAAIL-STKGKVHATPGNFNNEIGLPLTLLRL 151 (451)
T ss_pred ceEEeH-----HHHHHHHHHHHHHHH-hcCCcEEEEeCCCCcHHHHHHHHHHH-hhcCeEecCCCccCccccchhHHHhC
Confidence 89999 999999999999998 88999999999999999999999999 55778999999999999999999999
Q ss_pred cCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhc
Q 013570 182 DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261 (440)
Q Consensus 182 ~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~ 261 (440)
..+++++|+|+|+++.|+|..++++++|+++|||||+.+|+++|||.|+++++|.+|+.+++++|++|+|.|+++...+.
T Consensus 152 ~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~ 231 (451)
T COG0770 152 PADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWA 231 (451)
T ss_pred CCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877766
Q ss_pred CC-CCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 013570 262 VP-RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340 (440)
Q Consensus 262 ~~-~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L 340 (440)
.+ ...++++||.+..+|+++.+ +.....+..|++...+....+++|++|+||+.|+++|+++++.+|+++++|+++|
T Consensus 232 ~~~~~~~v~~fg~~~~~d~~~~~--i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L 309 (451)
T COG0770 232 AKIGNAKVLSFGLNNGGDFRATN--IHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEEIAAGL 309 (451)
T ss_pred hhcCCCcEEEEcCCCCCceeeEE--EEEcCCceEEEEEecCceEEEEecCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 23789999987557899999 9999889999998763333899999999999999999999999999999999999
Q ss_pred cCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCC
Q 013570 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420 (440)
Q Consensus 341 ~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d 420 (440)
+.+.+++||+|.+...++.++|||+||+||+||+++++.+..++ .++.|+|+|+|+|+|+.+.+.|+++++.+...++|
T Consensus 310 ~~~~~~~gR~~~~~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~-~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d 388 (451)
T COG0770 310 KELKPVKGRLEVILLANGKTLIDDSYNANPDSMRAALDLLAALP-GRKGIAVLGDMLELGEESEELHEEVGEYAVEAGID 388 (451)
T ss_pred HhcCCCCccceeEecCCCcEEEEcCCCCCHHHHHHHHHHHhhCc-cCCcEEEeCChhhhCccHHHHHHHHHHHHHhcCce
Confidence 99999999999666668899999999999999999999999988 34449999999999999999999999999998899
Q ss_pred EEEEEcCchhhhh
Q 013570 421 LIGLVGDRVVVQC 433 (440)
Q Consensus 421 ~vi~~G~~~~~~~ 433 (440)
.++++|+.++...
T Consensus 389 ~v~~~G~~~~~i~ 401 (451)
T COG0770 389 LVFLVGELSKAIA 401 (451)
T ss_pred EEEEEccchHHHH
Confidence 9999999776443
No 2
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=3e-79 Score=631.76 Aligned_cols=389 Identities=31% Similarity=0.427 Sum_probs=347.1
Q ss_pred cCHHHHHHHhCCeeccc-CCCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCCCCceEEE
Q 013570 27 WTINEIAESVNGKILKW-GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ 105 (440)
Q Consensus 27 ~~~~~l~~~~~~~~~~~-~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~~~~~~i~ 105 (440)
|+++||++.++|.+.+. ..|++|++|||+++| |+||||++|.++|||+|+++|++ +||.++|++++.+ ++.|+++
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~i~~v~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~Ga~~vv~~~~~~-~~~p~i~ 79 (453)
T PRK10773 4 VTLSQLADILNGELQGADITIDAVTTDTRKVTP--GCLFVALKGERFDAHDFADDAKA-AGAGALLVSRPLD-IDLPQLV 79 (453)
T ss_pred CCHHHHHHHhCCcccCCCeeeeEEEeeCCCCCC--CcEEEEecCCCCCHHHHHHHHHH-CCCeEEEEecCcC-CCCCEEE
Confidence 79999999999876432 248999999999999 99999999999999999999999 9999999997543 3678999
Q ss_pred EcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCC
Q 013570 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185 (440)
Q Consensus 106 V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~ 185 (440)
|+ |++++|+.++.+++. ..+.++||||||||||||++||+++|+..|. +..+.||+|+.+|+|++++.+..++
T Consensus 80 v~-----d~~~al~~la~~~~~-~~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~-~~~t~gn~n~~~G~~~~~~~~~~~~ 152 (453)
T PRK10773 80 VK-----DTRLAFGQLAAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILRQCGN-TLYTAGNLNNDIGVPLTLLRLTPEH 152 (453)
T ss_pred EC-----CHHHHHHHHHHHHHh-cCCCCEEEEcCCCchHHHHHHHHHHHHhcCc-ccccCccccCCcccccHHhcCCCCC
Confidence 99 999999999997665 5567899999999999999999999977665 5678999999999999988888899
Q ss_pred cEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcC-CC
Q 013570 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PR 264 (440)
Q Consensus 186 ~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~-~~ 264 (440)
+++|+|+|+++.+++.++...++|+++|||||++||+++|+|+|+|+++|.+||+.+++++.+|+|.||++...+.. ..
T Consensus 153 ~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~g~~vln~Dd~~~~~~~~~~~ 232 (453)
T PRK10773 153 DYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQSVIG 232 (453)
T ss_pred cEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCCCEEEEECCcHhHHHHHHHhc
Confidence 99999999988899988889999999999999999999999999999999999999888899999999998776651 11
Q ss_pred CCcEEEEeccC--CcceEEEeceEEEcCCeEEEEEeec-CeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Q 013570 265 GVRKVFFGWRR--GCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341 (440)
Q Consensus 265 ~~~vi~~g~~~--~ad~~~~~~~i~~~~~~~~f~~~~~-~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~ 341 (440)
..++++||... ++++++.+ +.....+..|.+... +. +++++|++|+||++|+++|++++..+|++++.|+++|+
T Consensus 233 ~~~~~~~g~~~~~~~d~~~~~--i~~~~~~~~f~~~~~~~~-~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~ 309 (453)
T PRK10773 233 SKTVWRFSPNAANSVDFTATN--IHVTSHGTEFTLHTPTGS-VDVLLPLPGRHNIANALAAAALAMSVGATLDAVKAGLA 309 (453)
T ss_pred CCcEEEEeCCCCCcCcEEEEE--EEEeCCeeEEEEEecCce-EEEEecCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 13578899753 36888888 876667778887654 23 37899999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCE
Q 013570 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDL 421 (440)
Q Consensus 342 ~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~ 421 (440)
+|++++||||.+...++.+||||||||||+||+++|+++++++ +|+++|||+|.|+|+++++.|+++++.+.+.++|.
T Consensus 310 ~~~~~~gR~e~v~~~~g~~iIDDsYn~nP~s~~aaL~~l~~~~--~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~ 387 (453)
T PRK10773 310 NLKAVPGRLFPIQLAEGQLLLDDSYNANVGSMTAAAQVLAEMP--GYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDK 387 (453)
T ss_pred hCCCCCCceeEEECCCCeEEEEcCCCCCHHHHHHHHHHHHhCC--CCEEEEECChhhcchHHHHHHHHHHHHHHHcCCCE
Confidence 9999999999987657889999999999999999999999864 57899999999999999999999999999999999
Q ss_pred EEEEcCchhh
Q 013570 422 IGLVGDRVVV 431 (440)
Q Consensus 422 vi~~G~~~~~ 431 (440)
||++|+.+..
T Consensus 388 v~~~G~~~~~ 397 (453)
T PRK10773 388 VLSVGKLSHA 397 (453)
T ss_pred EEEEChhHHH
Confidence 9999987653
No 3
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=8.9e-79 Score=632.06 Aligned_cols=395 Identities=33% Similarity=0.472 Sum_probs=348.5
Q ss_pred CCccCHHHHHHHhCCeeccc--CCCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCC---
Q 013570 24 SPIWTINEIAESVNGKILKW--GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--- 98 (440)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~~--~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~--- 98 (440)
.++|+++||+++++|.+.+. ..+++|++|||+++| |+||||++|.++|||+|+++|++ +||+++|++++...
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~DSR~v~~--g~lFval~G~~~DGh~fi~~A~~-~GA~~~v~~~~~~~~~~ 80 (479)
T PRK14093 4 RPLWTSDAMAEAMGATRSGALPRDVTGISIDSRTLAP--GDAYFAIKGDVHDGHAFVAAALK-AGAALAVVERAQRDKFA 80 (479)
T ss_pred CCccCHHHHHHHhCCeecCCCCCceeEEEeecCCCCC--CCEEEEeccCcCChHHHHHHHHH-cCCcEEEEecccccccC
Confidence 34689999999999987642 349999999999999 99999999999999999999999 99999999874311
Q ss_pred CCceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHH
Q 013570 99 WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178 (440)
Q Consensus 99 ~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l 178 (440)
.++|+++|+ |++++|+.||++++. ..+.++||||||||||||++||+++|+..|. +..+.|++|+.+|.|+++
T Consensus 81 ~~~~~i~V~-----d~~~al~~la~~~~~-~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~-~~~~~g~~n~~iG~p~~l 153 (479)
T PRK14093 81 ADAPLLVVD-----DVLAALRDLGRAARA-RLEAKVIAVTGSVGKTSTKEALRGVLGAQGE-THASVASFNNHWGVPLSL 153 (479)
T ss_pred CCCCEEEEC-----CHHHHHHHHHHHHHH-hcCCCEEEEcCCCCccHHHHHHHHHHHhcCC-ccCCCccCCCccchhHHH
Confidence 257999999 999999999996666 5778999999999999999999999977665 456899999999999999
Q ss_pred hcccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHH
Q 013570 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258 (440)
Q Consensus 179 ~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~ 258 (440)
+++..+++++|+|+|+++.+++..+...++|+++|||||++||+++|+|+|+|+++|.+||+.+++++.+|+|.||++..
T Consensus 154 ~~~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~ 233 (479)
T PRK14093 154 ARCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFD 233 (479)
T ss_pred HcCCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHH
Confidence 98888899999999999999988888899999999999999999999999999999999999888889999999999887
Q ss_pred hhcCC---CC-CcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHH
Q 013570 259 NLTVP---RG-VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLA 334 (440)
Q Consensus 259 ~~~~~---~~-~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~ 334 (440)
.+... .+ .++++||.+..+++++.+ +.....+..|.+...+...++++|++|.||++|+++|++++..+|++++
T Consensus 234 ~l~~~~~~~~~~~vi~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~ 311 (479)
T PRK14093 234 RLAASARAAGIARIVSFGADEKADARLLD--VALHADCSAVHADILGHDVTYKLGMPGRHIAMNSLAVLAAAELAGADLA 311 (479)
T ss_pred HHHHHhhhccCCcEEEEeCCCCccEEEEE--EEEcCCceEEEEEECCceEEEEecCCCHHHHHHHHHHHHHHHHcCCCHH
Confidence 76511 01 268899976667888877 7766666777775432223799999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCceeEEee---cCCeEEEEecCCCCHHHHHHHHHHHhccc--CCCcEEEEEcCCCCCChhcHHHHHH
Q 013570 335 QVGISLSNFSPVQMRSELLVS---RSGIKIVNDAYNANPISTRAAIDLLKDIA--CNGKRVVILGDMLELGSTERESHEK 409 (440)
Q Consensus 335 ~i~~~L~~~~~~~gR~e~~~~---~~~~~ii~Dsyahnp~s~~~al~~l~~~~--~~~r~i~VlG~m~e~G~~~~~~~~~ 409 (440)
+|+++|++|+|++||+|.++. .++.++|||||||||+||+++|+++++.+ +.+|+|+|||+|.|+|+++.+.|++
T Consensus 312 ~i~~~l~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~h~~ 391 (479)
T PRK14093 312 LAALALSQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGPELHRG 391 (479)
T ss_pred HHHHHHHhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHHHHHHH
Confidence 999999999999999998753 34588999999999999999999999874 2579999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEcCchh
Q 013570 410 ILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 410 l~~~~~~~~~d~vi~~G~~~~ 430 (440)
+++.+.+..+|.|+++|+.+.
T Consensus 392 ~~~~~~~~~~d~v~~~G~~~~ 412 (479)
T PRK14093 392 LAEAIRANAIDLVFCCGPLMR 412 (479)
T ss_pred HHHHHHHcCCCEEEEEchhHH
Confidence 999999888999999998664
No 4
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=2e-76 Score=605.31 Aligned_cols=366 Identities=38% Similarity=0.600 Sum_probs=323.9
Q ss_pred eeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEecccc-CCCCceEEEEcCCCCccHHHHHHHHHHHhhcCC
Q 013570 51 TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR 129 (440)
Q Consensus 51 ~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~-~~~~~~~i~V~~~~~~d~~~al~~la~~~~~p~ 129 (440)
+|||+|+| |+||||++|+++|||+|+++|++ +||.++|++++. ...++|+|+|+ |+++||+.||++|+. .
T Consensus 1 ~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~Ga~~~i~~~~~~~~~~~~~i~V~-----d~~~al~~la~~~~~-~ 71 (417)
T TIGR01143 1 TDSRAIKP--GDLFIALKGERFDGHDFVEQALA-AGAVAVLVDREVGPDNGLPQILVD-----DTLEALQALASAKRA-K 71 (417)
T ss_pred CCCCccCC--CcEEEEeCCCCCCHHHHHHHHHH-CCCEEEEEcccccCCCCCCEEEEC-----CHHHHHHHHHHHHHh-h
Confidence 59999999 99999999999999999999999 999999999742 11267899999 999999999995544 4
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCC
Q 013570 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (440)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p 209 (440)
.+.++||||||||||||++||+++|+..|. +..+.||+|+.+|+|.+++..+.+++++|||+|+++.+++.++...++|
T Consensus 72 ~~~~vI~VTGTnGKTTt~~ll~~iL~~~g~-~~~t~gn~n~~ig~p~~~l~~~~~~~~~VlE~g~s~~g~~~~~~~~~~p 150 (417)
T TIGR01143 72 FSGKVIGITGSSGKTTTKEMLAAILSHKYK-VFATPGNFNNEIGLPLTLLRAPGDHDYAVLEMGASHPGEIAYLAEIAKP 150 (417)
T ss_pred CCCCEEEEcCCCchhHHHHHHHHHHhccCc-EecCCCcCCCccchhHHHhcCCCCCeEEEEEeCCCCCCcHHHHhCccCC
Confidence 457899999999999999999999976664 6778999999999999999888999999999998888888888888999
Q ss_pred cEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCC-CCCcEEEEeccCCcceEEEeceEEE
Q 013570 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVAAQVAN 288 (440)
Q Consensus 210 ~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~-~~~~vi~~g~~~~ad~~~~~~~i~~ 288 (440)
+++|||||++||+|+|||+|+|+++|.+||+.+++++.+|+|.||+....+... .+.++++||.+. +++++.+ +..
T Consensus 151 ~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~--i~~ 227 (417)
T TIGR01143 151 DIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEG-GDFSAAD--ISY 227 (417)
T ss_pred CEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCC-CcEEEEE--EEE
Confidence 999999999999999999999999999999988888999999999988776521 124688999754 6788777 766
Q ss_pred cCCe-EEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCC
Q 013570 289 GGLG-VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367 (440)
Q Consensus 289 ~~~~-~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya 367 (440)
...+ ..|.+...+...++++|++|.||++|+++|++++..+|+++++|+++|++|++++||||+ ...+++++|+||||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N~laAia~~~~lGi~~~~i~~~l~~~~~~~gR~e~-~~~~~~~vidDsya 306 (417)
T TIGR01143 228 SALGSTGFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELKLVKGRFEI-QTKNGLTLIDDTYN 306 (417)
T ss_pred cCCCCEEEEEEeCCceEEEEccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceeE-EcCCCcEEEEcCCC
Confidence 6555 777776542223788999999999999999999999999999999999999999999994 44578999999999
Q ss_pred CCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhh
Q 013570 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQ 432 (440)
Q Consensus 368 hnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~ 432 (440)
|||+|++++|++++++. +|+|+|||+|.|+|++++.+|++|++.+.+..+|.||++|+..+..
T Consensus 307 ~np~s~~~al~~l~~~~--~r~i~VlG~~~e~G~~~~~~~~~l~~~~~~~~~d~vi~~g~~~~~~ 369 (417)
T TIGR01143 307 ANPDSMRAALDALARFP--GKKILVLGDMAELGEYSEELHAEVGRYANSLGIDLVFLVGEEAAVI 369 (417)
T ss_pred CCHHHHHHHHHHHHhCC--CCEEEEEcCchhcChHHHHHHHHHHHHHHHcCCCEEEEECHHHHHH
Confidence 99999999999998765 6899999999999999999999999999888789999999987543
No 5
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=6.9e-72 Score=614.74 Aligned_cols=390 Identities=25% Similarity=0.380 Sum_probs=344.4
Q ss_pred cCHHHHHHHhCCeeccc--CCCceEEeeCCcc--ccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEecccc-C---C
Q 013570 27 WTINEIAESVNGKILKW--GPPGIICTDTRIL--APNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-N---N 98 (440)
Q Consensus 27 ~~~~~l~~~~~~~~~~~--~~i~~i~~dsr~v--~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~-~---~ 98 (440)
|++++|+++++|.+.++ ..|++|++|||+| +| |+||||++|+++|||+|+++|++ +||+++|++++. + .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~i~~DSR~v~~~~--g~lFval~G~~~DGh~fi~~A~~-~GA~~iv~~~~~~~~~~~ 79 (822)
T PRK11930 3 YTLESISGILGAEGLGDKDAIIDQILTDSRSLSFPE--NTLFFALKGERNDGHRYIQELYE-KGVRNFVVSEEKHPEESY 79 (822)
T ss_pred ccHHHHHHHhCCeeccCCCceeCEEEecCCccCCCC--CcEEEEeCCCCCCHHHHHHHHHH-CCCEEEEEeccccccccC
Confidence 79999999999987643 2389999999999 99 99999999999999999999999 999999997632 1 1
Q ss_pred CCceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHH
Q 013570 99 WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178 (440)
Q Consensus 99 ~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l 178 (440)
.++|+++|+ |+++||+.||++|+. +.+.++||||||||||||++||+++|+ ..+++..+.+++|+.+|+|.++
T Consensus 80 ~~~~~i~V~-----d~~~al~~la~~~~~-~~~~~vIgVTGT~GKTTT~~ll~~iL~-~~~~~~~~~~~~n~~ig~p~~~ 152 (822)
T PRK11930 80 PDANFLKVK-----DPLKALQELAAYHRS-QFDIPVIGITGSNGKTIVKEWLYQLLS-PDYNIVRSPRSYNSQIGVPLSV 152 (822)
T ss_pred CCCCEEEEC-----CHHHHHHHHHHHHHH-hCCCCEEEEeCCCcHHHHHHHHHHHHh-ccCcEecCCcccCcchhHHHHH
Confidence 257899999 999999999997765 788899999999999999999999995 4556777889999999999999
Q ss_pred hcccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHH
Q 013570 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258 (440)
Q Consensus 179 ~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~ 258 (440)
+.+..+++++|+|+|+++.+++.++..+++||++|||||++||+++|+|+|+|+++|.+||+. .+.+|+|.||+...
T Consensus 153 ~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~ 229 (822)
T PRK11930 153 WQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELIS 229 (822)
T ss_pred hcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHH
Confidence 888889999999999999999999988899999999999999999999999999999999974 47899999999887
Q ss_pred hhcCC--CCCcEEEEeccC-CcceEEEeceEEEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHH
Q 013570 259 NLTVP--RGVRKVFFGWRR-GCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQ 335 (440)
Q Consensus 259 ~~~~~--~~~~vi~~g~~~-~ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~ 335 (440)
.+... ...++++||... .+++++.+ ++...++..|.+...+....+++|++|+||++|+++|++++..+|+++++
T Consensus 230 ~~~~~~~~~~~~~~~g~~~~~~d~~~~~--i~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~ 307 (822)
T PRK11930 230 SCITKSNLTLKLISWSRKDPEAPLYIPF--VEKKEDHTVISYTYKGEDFHFEIPFIDDASIENLIHCIAVLLYLGYSADQ 307 (822)
T ss_pred HHHHhhhcCCcEEEEcCCCCCCcEEEEE--EEEcCCceEEEEEeCCceEEEEecCCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 65411 124678999754 56888887 77766777777654322237899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHH
Q 013570 336 VGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCC 415 (440)
Q Consensus 336 i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~ 415 (440)
|.++|++|++++||||++...+++++|||||||||+||+++|+++++..+.+++++|+|+|.|+|.++.+.|+++++.+.
T Consensus 308 i~~~L~~f~~~~gR~e~~~~~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~~~~~~~l~~~l~ 387 (822)
T PRK11930 308 IQERMARLEPVAMRLEVKEGINNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSPEELYRKVAQLIS 387 (822)
T ss_pred HHHHHHhCCCCCCeeEEEEcCCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999986578999999999999999999999998764468999999999999999999999999999
Q ss_pred HcCCCEEEEEcCchhh
Q 013570 416 DACIDLIGLVGDRVVV 431 (440)
Q Consensus 416 ~~~~d~vi~~G~~~~~ 431 (440)
..++|.|+++|+....
T Consensus 388 ~~~i~~vi~~G~~~~~ 403 (822)
T PRK11930 388 KRGIDRLIGIGEEISS 403 (822)
T ss_pred HcCCCEEEEECHHHHH
Confidence 7779999999987643
No 6
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=9.5e-70 Score=607.93 Aligned_cols=377 Identities=35% Similarity=0.490 Sum_probs=328.8
Q ss_pred CceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCCCCceEEEEcCCCCccHHHHHHHHHHHh
Q 013570 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA 125 (440)
Q Consensus 46 i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~ 125 (440)
|++|++|||+|+| |+||||++|+++|||+|+++|++ +||+++|++++....++|+++|+ |++++|+.|+.++
T Consensus 526 i~~i~~dSr~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~i~~~~~~~~~~~~i~V~-----d~~~al~~la~~~ 597 (958)
T PRK11929 526 AGAVSTDSRSVGR--GELFVALRGENFDGHDYLPQAFA-AGACAAVVERQVADVDLPQIVVD-----DTRAALGRLATAW 597 (958)
T ss_pred cCeEEeeCCccCC--CCEEEEecCCCCCHHHHHHHHHH-cCCEEEEECCCccCCCCCEEEeC-----CHHHHHHHHHHHH
Confidence 8999999999999 99999999999999999999999 99999999975422367899999 9999999999966
Q ss_pred hcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCC--CCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhh
Q 013570 126 RNSRFSGVLVGVTGSVGKSTTKSMIALALESLG--VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203 (440)
Q Consensus 126 ~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g--~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~ 203 (440)
+. ..+.++||||||||||||++||+++|+..+ ..+..+.||+|+.+|+|++++.++.+++++|+|+|+++.+++.++
T Consensus 598 ~~-~~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~~~~~~~~~VlE~s~~~~g~~~~~ 676 (958)
T PRK11929 598 RA-RFSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLRLRAQHRAAVFELGMNHPGEIAYL 676 (958)
T ss_pred Hh-cCCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhcCCCCCcEEEEEeCCCCCccHHHH
Confidence 65 557789999999999999999999997764 346678999999999999998888889999999999988899998
Q ss_pred ccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcC-CCCCcEEEEeccCCcceEEE
Q 013570 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLV 282 (440)
Q Consensus 204 ~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~-~~~~~vi~~g~~~~ad~~~~ 282 (440)
..+++|+++|||||++||+++|+|+|+|+++|.+||+.+++++.+|+|.||+....+.. ....++++||.+..+++.+.
T Consensus 677 ~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~~~~ 756 (958)
T PRK11929 677 AAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAE 756 (958)
T ss_pred hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcceEee
Confidence 88889999999999999999999999999999999998888899999999998877652 11246889997655565543
Q ss_pred e--ceEEE-cCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCe
Q 013570 283 A--AQVAN-GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI 359 (440)
Q Consensus 283 ~--~~i~~-~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~ 359 (440)
. ..+.. ..++..|.+...+...++++|++|.||++|+++|++++..+|+++++|+++|++|++++||||.+...++.
T Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~~~~~~ 836 (958)
T PRK11929 757 KIAKDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRNALAAIACALAAGASLKQIRAGLERFQPVAGRMQRRRLSCGT 836 (958)
T ss_pred ecccceeecCCCceEEEEEECCceEEEEeCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCCceEEEcCCCc
Confidence 3 00221 23455666654312237899999999999999999999999999999999999999999999999866789
Q ss_pred EEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhh
Q 013570 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQ 432 (440)
Q Consensus 360 ~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~ 432 (440)
++|+|||||||+|++++|+++++++ .+|+|+|||+|.|+|++++..|++|++++.+.+++.|+++|+.+...
T Consensus 837 ~iidDsya~np~s~~aaL~~l~~~~-~~~~i~VlG~~~e~g~~~~~~h~~~g~~~~~~~~~~vi~~Ge~~~~i 908 (958)
T PRK11929 837 RIIDDTYNANPDSMRAAIDVLAELP-NGPRALVLGDMLELGDNGPAMHREVGKYARQLGIDALITLGEAARDA 908 (958)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcc-CCCEEEEECCchhcCcHHHHHHHHHHHHHHHcCCCEEEEECcCHHHH
Confidence 9999999999999999999999876 46899999999999999999999999999888899999999987643
No 7
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=1.6e-68 Score=554.36 Aligned_cols=364 Identities=24% Similarity=0.323 Sum_probs=306.3
Q ss_pred CceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccC--CCCceEEEEcCCCCccHHHHHHHHHH
Q 013570 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN--NWDKGFVQVEGNGNVNTLNSLVNMAC 123 (440)
Q Consensus 46 i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~--~~~~~~i~V~~~~~~d~~~al~~la~ 123 (440)
|++|++|||++++ |+||||++|+++|||+|+++|++ +||+++|++++.. .+++|+++|+ |+++||+.||+
T Consensus 4 ~~~v~~dsr~v~~--g~lFval~G~~~dgh~fi~~A~~-~GA~~~i~~~~~~~~~~~~~~~~v~-----d~~~al~~la~ 75 (464)
T TIGR01085 4 VTGLTLDSREVKP--GDLFVAIKGTHVDGHDFIHDAIA-NGAVAVVVERDVDFYVAPVPVIIVP-----DLRHALSSLAA 75 (464)
T ss_pred eeEEEecCcCCCC--CCEEEEecCCcCCHHHHHHHHHH-CCCeEEEEccccccccCCceEEEEC-----CHHHHHHHHHH
Confidence 7889999999999 99999999999999999999999 9999999998643 1257899999 99999999999
Q ss_pred Hhh-cCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCe--EEecCcC---CCCcchh------------hHHhcc-cCC
Q 013570 124 YAR-NSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGNW---NNRVGVA------------LSLIGI-DRA 184 (440)
Q Consensus 124 ~~~-~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~--~~t~g~~---n~~~g~p------------~~l~~~-~~~ 184 (440)
+|+ +|+.+.++||||||||||||++||+++|+..|+++ .++.|++ |+.+|.| .+++.+ +.+
T Consensus 76 ~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~ 155 (464)
T TIGR01085 76 AFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAG 155 (464)
T ss_pred HHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCC
Confidence 544 45578899999999999999999999999888875 5677777 7777766 234444 678
Q ss_pred CcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCC
Q 013570 185 VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264 (440)
Q Consensus 185 ~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~ 264 (440)
++++|+|+| ++.+++.++.. ++|+++|||||++||+++|||+|+|+++|.+|++.++++|.+|+|.||+....+....
T Consensus 156 ~~~~VlE~g-~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~ 233 (464)
T TIGR01085 156 AQYAVMEVS-SHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRL 233 (464)
T ss_pred CCEEEEEec-HHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhc
Confidence 999999999 67777777776 7999999999999999999999999999999999988888999999999887765211
Q ss_pred CCcEEEEec-cC-----CcceEEEeceEEEcCCeEEEEEeec-CeEEEEEeCcCcHHHHHHHHHHHHHHHHcC-CCHHHH
Q 013570 265 GVRKVFFGW-RR-----GCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHLAINACAAAAVATLFG-VSLAQV 336 (440)
Q Consensus 265 ~~~vi~~g~-~~-----~ad~~~~~~~i~~~~~~~~f~~~~~-~~~~~~~l~l~G~~nv~NalaAia~~~~lg-~~~~~i 336 (440)
...++|+. .. .++++..+ +.....+..|.+... +. ..+.+|++|.||++|+++|++++..+| ++++.|
T Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~l~G~hn~~NalaAia~a~~lg~i~~e~i 309 (464)
T TIGR01085 234 -PKDITVSAITQPADGRAQDIKITD--SGYSFEGQQFTFETPAGE-GHLHTPLIGRFNVYNLLAALATLLHLGGIDLEDI 309 (464)
T ss_pred -CCCeEEEEecCCCccccccEEEEE--EEEecCceEEEEEeCCce-EEEEecCccHhHHHHHHHHHHHHHHcCCCCHHHH
Confidence 11233332 11 34666666 655555667777644 23 378999999999999999999999999 999999
Q ss_pred HHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHH
Q 013570 337 GISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCD 416 (440)
Q Consensus 337 ~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~ 416 (440)
+++|++|++++||||++...+++.+|+| |||||+||+++|+++++.+ .+|+++||| +|..++..|+++++.+..
T Consensus 310 ~~~L~~~~~~~gR~e~~~~~~g~~vi~D-y~~NP~s~~aal~~l~~~~-~~r~i~VlG----lg~~~~~~~~~~~~~~~~ 383 (464)
T TIGR01085 310 VAALEKFRGVPGRMELVDGGQKFLVIVD-YAHTPDALEKALRTLRKHK-DGRLIVVFG----CGGDRDRGKRPLMGAIAE 383 (464)
T ss_pred HHHHHhCCCCCCCcEEEEcCCCCEEEEE-CCCCHHHHHHHHHHHHhhC-CCcEEEEEC----CCCCCCcchhHHHHHHHH
Confidence 9999999999999999986567899999 9999999999999998764 468999999 455667779999988877
Q ss_pred cCCCEEEEEcCch
Q 013570 417 ACIDLIGLVGDRV 429 (440)
Q Consensus 417 ~~~d~vi~~G~~~ 429 (440)
...|.++++|+.+
T Consensus 384 ~~~d~vi~~g~~~ 396 (464)
T TIGR01085 384 QLADLVILTSDNP 396 (464)
T ss_pred hcCCEEEEeCCCc
Confidence 6689999999865
No 8
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=1.1e-67 Score=547.00 Aligned_cols=357 Identities=24% Similarity=0.317 Sum_probs=299.2
Q ss_pred CCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccC-CCCceEEEEcCCCCccHHHHHHHHHH
Q 013570 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMAC 123 (440)
Q Consensus 45 ~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~-~~~~~~i~V~~~~~~d~~~al~~la~ 123 (440)
.+++|++|||+++| |+||||++|+++|||+|+++|++ +||+++|++++.. ..++|+|+|+ |+++||+.||+
T Consensus 14 ~i~~i~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~v~~~~~~~~~~~~~i~V~-----d~~~al~~la~ 85 (460)
T PRK00139 14 EITGLTYDSRKVKP--GDLFVALPGHKVDGRDFIAQAIA-NGAAAVVAEADGEAGTGVPVIIVP-----DLRKALALLAA 85 (460)
T ss_pred ceeEEEeeccCcCC--CCEEEEeCCCcCcHHHHHHHHHH-CCCEEEEEcCccccCCCceEEEEC-----CHHHHHHHHHH
Confidence 48899999999999 99999999999999999999999 9999999997532 1267999999 99999999999
Q ss_pred -HhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcch-----------hhHHhc-----ccCCCc
Q 013570 124 -YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGV-----------ALSLIG-----IDRAVD 186 (440)
Q Consensus 124 -~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~-----------p~~l~~-----~~~~~~ 186 (440)
++++|+.+.++||||||||||||++||+++|++.|+++ ++.||.|+.++. |+++++ .+.+++
T Consensus 86 ~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~-~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~ 164 (460)
T PRK00139 86 AFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKT-ALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVT 164 (460)
T ss_pred HHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCE-EEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCC
Confidence 55556668899999999999999999999998888665 578888887775 777664 467899
Q ss_pred EEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCC
Q 013570 187 IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266 (440)
Q Consensus 187 ~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~ 266 (440)
++|+|+| ++.+++.++.. ++|+++|||||++||+++|||+|+|+++|++|++... +.+|+|.||+....+..
T Consensus 165 ~~VlE~~-s~~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~~--~~~v~n~dd~~~~~~~~---- 236 (460)
T PRK00139 165 YAAMEVS-SHALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSELG--LAAVINADDEVGRRLLA---- 236 (460)
T ss_pred EEEEEcc-hhhHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcCC--CeEEEEcCcHhHHHHHh----
Confidence 9999998 66555566655 7999999999999999999999999999999998642 48999999998776652
Q ss_pred cEEEEecc-CCcceEEEeceEEEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCC
Q 013570 267 RKVFFGWR-RGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345 (440)
Q Consensus 267 ~vi~~g~~-~~ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~ 345 (440)
++.+|+.. ..+++++.+ +.....+..|.+.. .+.++++|.||++|+++|++++..+|+++++|+++|++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~~~~ 309 (460)
T PRK00139 237 LPDAYAVSMAGADLRATD--VEYTDSGQTFTLVT-----EVESPLIGRFNVSNLLAALAALLALGVPLEDALAALAKLQG 309 (460)
T ss_pred hcEEEEecCCCCcEEEEE--EEEecCceEEEEEE-----EEEecccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 25677765 456787777 66555556665542 57889999999999999999999999999999999999999
Q ss_pred CCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEE
Q 013570 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425 (440)
Q Consensus 346 ~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~ 425 (440)
++||||++...+++++|+| |||||+||+++|+++++.+ .+|+++|||+ .+++ +..|++++..+.....|.++++
T Consensus 310 ~~gR~e~~~~~~~~~iI~D-yahNP~s~~aal~~l~~~~-~~r~i~VlG~---g~~k-~~~~~~~~~~~~~~~~d~vi~~ 383 (460)
T PRK00139 310 VPGRMERVDAGQGPLVIVD-YAHTPDALEKVLEALRPHA-KGRLICVFGC---GGDR-DKGKRPLMGAIAERLADVVIVT 383 (460)
T ss_pred CCCCcEEEEcCCCCEEEEE-CCCCHHHHHHHHHHHHhhc-CCcEEEEECC---CCCC-chhhhHHHHHHHHHcCCEEEEE
Confidence 9999999986568899999 9999999999999998865 4789999998 4444 4555655555444448999999
Q ss_pred cCchhh
Q 013570 426 GDRVVV 431 (440)
Q Consensus 426 G~~~~~ 431 (440)
++..+.
T Consensus 384 ~~~~~~ 389 (460)
T PRK00139 384 SDNPRS 389 (460)
T ss_pred CCCCCC
Confidence 876543
No 9
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=2.1e-64 Score=525.09 Aligned_cols=351 Identities=21% Similarity=0.231 Sum_probs=280.4
Q ss_pred CceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCCCCceEEEEcCCCCccHHHHHHHHHH-H
Q 013570 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC-Y 124 (440)
Q Consensus 46 i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~-~ 124 (440)
+++|++|||+++| |+||||+ |.++ ||+|+++|++ +||+++|+++..+. ++|+|+|+ |+++||+.||+ +
T Consensus 34 i~~i~~DSR~v~~--g~lFva~-~~~~-gh~fi~~A~~-~GA~~~v~~~~~~~-~~~~i~V~-----d~~~al~~la~~~ 102 (481)
T PRK14022 34 FDDISYDSRTADE--GTLFFAK-GAYF-KHKFLQNAIT-QGLKLYVSEKDYEV-GIPQVIVP-----DIKKAMSLIAMEF 102 (481)
T ss_pred EEEEEecCcCCCC--CCEEEEc-CCCc-hHHHHHHHHH-CCCeEEEEecccCC-CCcEEEEC-----CHHHHHHHHHHHH
Confidence 8999999999999 9999999 6666 9999999999 99999999974321 57899999 99999999998 6
Q ss_pred hhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcc---------hh--hHHhc-----ccCCCcEE
Q 013570 125 ARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVG---------VA--LSLIG-----IDRAVDIA 188 (440)
Q Consensus 125 ~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g---------~p--~~l~~-----~~~~~~~~ 188 (440)
|.+|+.++++||||||||||||++||+++|+..|. +..+.|+.++.+| .| +++++ .+.+++++
T Consensus 103 ~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~-~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~~~~~e~g~~~~ 181 (481)
T PRK14022 103 YDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHK-PAMLSTMNTTLDGETFFKSALTTPESLDLFKMMAEAVDNGMTHL 181 (481)
T ss_pred hcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCC-CEEEEeeeeeccCCeeeeCCCCCchHHHHHHHHHHHHHCCCCEE
Confidence 66688999999999999999999999999977765 4455555444444 67 55543 25689999
Q ss_pred EEeeccCCcchHHhhccccCCcEEEEcCCChhhhcc--CCCHHHHHHHHHHhcccCCCCcEEEEeCC-cHHHHhhcCCCC
Q 013570 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES--LGSLEDVARAKGEIFQESKLGDVCVLNAD-DPLVANLTVPRG 265 (440)
Q Consensus 189 VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~--~gs~e~~~~~K~~i~~~~~~~~~~Vln~d-d~~~~~~~~~~~ 265 (440)
|||+| |+ +.+......++|+++|||||++||+++ |+|+|+|+++|++||+ +++.+|+|.| |+..........
T Consensus 182 v~Evs-S~-~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~~ 256 (481)
T PRK14022 182 IMEVS-SQ-AYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTP 256 (481)
T ss_pred EEEec-hh-HHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhcC
Confidence 99998 33 333333345799999999999999999 9999999999999995 4689999998 555332221112
Q ss_pred CcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCe-EEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC
Q 013570 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344 (440)
Q Consensus 266 ~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~-~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~ 344 (440)
.++++||.+..++++..+ .|.+...+. ...++++++|.||++|+++|++++..+|++++.|+++|++ .
T Consensus 257 ~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~i~~~L~~-~ 325 (481)
T PRK14022 257 QEHDFYGIDSENQIMASN----------AFSFEATGKLAGTYDIQLIGKFNQENAMAAGLACLRLGASLEDIQKGIAQ-T 325 (481)
T ss_pred CCEEEEecCCccceEEEE----------EEEEEEcccCCceEEEEEechhhHHHHHHHHHHHHHcCCCHHHHHHHhcc-C
Confidence 467899876444443221 233332100 0146778999999999999999999999999999999999 9
Q ss_pred CCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEE
Q 013570 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGL 424 (440)
Q Consensus 345 ~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~ 424 (440)
+++||||++...+++.+|+| |||||+||+++|++++++. .+|+++|||+|.|.|.. .|+++++.+.+.....+++
T Consensus 326 ~~~gR~e~i~~~~g~~vi~D-yahNP~s~~aal~~l~~~~-~~r~i~V~G~~~e~g~~---~~~~~~~~~~~~~~~~vi~ 400 (481)
T PRK14022 326 PVPGRMEVLTQSNGAKVFID-YAHNGDSLNKLIDVVEEHQ-KGKLILLLGAAGNKGES---RRPDFGRVANRHPYLQVIL 400 (481)
T ss_pred CCCCCeEEEECCCCCEEEEE-CCCCHHHHHHHHHHHhhhC-CCCEEEEECCCCCCCcc---hhHHHHHHHHhcCCceEEE
Confidence 99999999985467889999 9999999999999998865 57899999998777754 3889999998875334888
Q ss_pred EcCch
Q 013570 425 VGDRV 429 (440)
Q Consensus 425 ~G~~~ 429 (440)
+++..
T Consensus 401 ~~~~~ 405 (481)
T PRK14022 401 TADDP 405 (481)
T ss_pred ccCCC
Confidence 88654
No 10
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1.1e-63 Score=559.04 Aligned_cols=366 Identities=25% Similarity=0.314 Sum_probs=304.4
Q ss_pred CCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccC---C-CCceEEEEcCCCCccHHHHHHH
Q 013570 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---N-WDKGFVQVEGNGNVNTLNSLVN 120 (440)
Q Consensus 45 ~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~---~-~~~~~i~V~~~~~~d~~~al~~ 120 (440)
.+++|++|||+|+| |+||||++|.++|||+|+++|++ +||+++|++++.. . .++|+|+|+ |++++|+.
T Consensus 28 ~~~~i~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~v~~~~~~~~~~~~~~~~i~V~-----d~~~al~~ 99 (958)
T PRK11929 28 ATADLRLDSREVQP--GDLFVACRGAASDGRAFIDQALA-RGAAAVLVEAEGEDQVAAADALVLPVA-----DLRKALGE 99 (958)
T ss_pred ccceeeeeccCCCC--CCEEEEeCCCCCCHHHHHHHHHH-cCCEEEEEeccccccccCCCCeEEEEC-----CHHHHHHH
Confidence 49999999999999 99999999999999999999999 9999999997531 1 257999999 99999999
Q ss_pred HHH-HhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCC-----cchhhHH----------hcc-cC
Q 013570 121 MAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR-----VGVALSL----------IGI-DR 183 (440)
Q Consensus 121 la~-~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~-----~g~p~~l----------~~~-~~ 183 (440)
||+ +|++|+.++++||||||||||||++||+++|+..|+++ ++.||+|++ ++.|.|. ..+ +.
T Consensus 100 la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~-~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~ 178 (958)
T PRK11929 100 LAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPC-GSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAA 178 (958)
T ss_pred HHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCE-EEECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHC
Confidence 999 88888888999999999999999999999998888887 567777763 4555443 233 67
Q ss_pred CCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcC-
Q 013570 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV- 262 (440)
Q Consensus 184 ~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~- 262 (440)
+++++|||+| ++.+++.++.. ++|+++|||||++||+++|||+|+|+++|++||+.+++++.+|+|.||+....+..
T Consensus 179 ~~~~~VlE~s-s~~l~~~rl~~-~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~ 256 (958)
T PRK11929 179 GADAVAMEAS-SHGLEQGRLDG-LRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAA 256 (958)
T ss_pred CCCEEEEEec-cchHhhCcccc-cccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHH
Confidence 8999999997 66667788876 69999999999999999999999999999999998888899999999998877652
Q ss_pred -CCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Q 013570 263 -PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341 (440)
Q Consensus 263 -~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~ 341 (440)
.....+.+|+....+++++.+ +.....+..|.+...+....+++|++|.||++|+++|++++..+|+++++|+++|+
T Consensus 257 ~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~I~~~L~ 334 (958)
T PRK11929 257 LPRGLKVGYSPQNAGADVQARD--LRATAHGQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKLGLPLAQIARALA 334 (958)
T ss_pred cCCCceEEEEeeCCCccEEEEE--EEEcCCceEEEEEeCCceEEEEecCccHhhHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 111245566654456788777 76666677777765422237889999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEe---ecCCeEEEEecCCCCHHHHHHHHHHHhccc--CCCcEEEEEcCCCCCChhcHHHHHHHHHHHHH
Q 013570 342 NFSPVQMRSELLV---SRSGIKIVNDAYNANPISTRAAIDLLKDIA--CNGKRVVILGDMLELGSTERESHEKILSYCCD 416 (440)
Q Consensus 342 ~~~~~~gR~e~~~---~~~~~~ii~Dsyahnp~s~~~al~~l~~~~--~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~ 416 (440)
+|++++||||++. ..+++.+|+| |||||+||+++|++++++. +.+|+++|||+ .|++....+..+++.+.+
T Consensus 335 ~~~~~~gR~e~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~---g~~r~~~~~~~~~~~~~~ 410 (958)
T PRK11929 335 AVSPVPGRMERVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGC---GGDRDKGKRPEMGRIAAE 410 (958)
T ss_pred cCCCCCCCcEEeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECC---CCCCCcchhHHHHHHHHH
Confidence 9999999999984 2367889999 9999999999999998542 24688999997 566655544445555555
Q ss_pred cCCCEEEEEcCc
Q 013570 417 ACIDLIGLVGDR 428 (440)
Q Consensus 417 ~~~d~vi~~G~~ 428 (440)
+ +|.|+++.+.
T Consensus 411 ~-~d~vi~t~~~ 421 (958)
T PRK11929 411 L-ADRVVVTSDN 421 (958)
T ss_pred h-CCEEEEcCCC
Confidence 4 7999987654
No 11
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.5e-58 Score=472.34 Aligned_cols=366 Identities=24% Similarity=0.299 Sum_probs=304.7
Q ss_pred ceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEecccc-CC-CCceEEEEcCCCCccHHHHHHHHHH-
Q 013570 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NN-WDKGFVQVEGNGNVNTLNSLVNMAC- 123 (440)
Q Consensus 47 ~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~-~~-~~~~~i~V~~~~~~d~~~al~~la~- 123 (440)
++++.|||++++ |+||+|++|.++||++|+.+|++ +|+.+++++... .. ..+|++.|+ |++.++..++.
T Consensus 11 ~~l~~dsr~v~~--g~lf~a~~g~~~~g~~~~~~a~~-~Gavav~~~~~~~~~~~~~~vi~V~-----~~~~~~~~~a~~ 82 (475)
T COG0769 11 TGLTLDSRKVKE--GDLFVAKPGTKVDGHDFIAGAIA-PGAVAVVVEKDIKLAEAGVPVIVVT-----GTNGKLTTLALA 82 (475)
T ss_pred ccceeehhhcCC--CcEEEEEeccccccccchHhHhh-CCCEEEEecccccccccCCCEEEEc-----CcHHHHHHHHHH
Confidence 789999999999 99999999999999999999999 999999999653 11 257789999 99999999998
Q ss_pred HhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCe--EEecCcCCC---------CcchhhHHh-----cccCCCcE
Q 013570 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGNWNN---------RVGVALSLI-----GIDRAVDI 187 (440)
Q Consensus 124 ~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~--~~t~g~~n~---------~~g~p~~l~-----~~~~~~~~ 187 (440)
+|..|+.++++|+||||||||||++++.++++..|.++ .+|.+...+ ..+.++.+. .+++.+++
T Consensus 83 ~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~ 162 (475)
T COG0769 83 FYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEI 162 (475)
T ss_pred hccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcE
Confidence 99998978999999999999999999999998888776 344443221 111223332 25789999
Q ss_pred EEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHH---hhcCCC
Q 013570 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPR 264 (440)
Q Consensus 188 ~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~---~~~~~~ 264 (440)
++||++ ||...+.|+. .+.+++++|||+++||||||+++|+|+.+|..+|+.+++.+.+|+|.||++.. ....+.
T Consensus 163 ~vmEvs-sh~l~~~Rv~-~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~ 240 (475)
T COG0769 163 AVMEVS-SHGLVQGRVE-GVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNA 240 (475)
T ss_pred EEEEee-hhHHHhCCcc-CceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhc
Confidence 999998 5555556654 47999999999999999999999999999999998667788999999999884 333222
Q ss_pred CCcEEEEeccCCcc-eEEEeceEEEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 013570 265 GVRKVFFGWRRGCD-VRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343 (440)
Q Consensus 265 ~~~vi~~g~~~~ad-~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~ 343 (440)
..++++||.+.+.. ....+ ++....++.+.+...+....+++|++|.||++|+|||++++..+|+|++.|+++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~--i~~~~~g~~~~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~lG~~~e~i~~~l~~~ 318 (475)
T COG0769 241 LGDYITYGCDFKRPDLDYRG--IEESSSGSDFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALALGVDLEDILAGLETL 318 (475)
T ss_pred CCCEEEeCCCCchhhhhhcc--ceeeeccceeEEEccCCceeEeccccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 24789999875322 11213 4455556666555443234899999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEE
Q 013570 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIG 423 (440)
Q Consensus 344 ~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi 423 (440)
+|++||||.+..+ +..+++| |||||++++++|++++.+. .+|+|+|||+ .|+++..++..|+..+.++ .|.++
T Consensus 319 ~~v~GRmE~v~~~-~~~v~VD-yAHnPd~le~~L~~~~~~~-~g~li~VfG~---gGDrD~~kr~~mg~ia~~~-ad~vi 391 (475)
T COG0769 319 KPVPGRMELVNIG-GKLVIVD-YAHNPDGLEKALRAVRLHA-AGRLIVVFGC---GGDRDKSKRPDMGAIAEQL-ADIVI 391 (475)
T ss_pred CCCCCcceEecCC-CCeEEEE-eccChHHHHHHHHHHHhhc-CCcEEEEECc---cCCCCcccccchHHHHHhc-CCcEE
Confidence 9999999999984 8999999 9999999999999999665 6889999999 9999999999999999998 79999
Q ss_pred EEcCchhh
Q 013570 424 LVGDRVVV 431 (440)
Q Consensus 424 ~~G~~~~~ 431 (440)
++.++.+.
T Consensus 392 vt~dnpR~ 399 (475)
T COG0769 392 VTSDNPRS 399 (475)
T ss_pred EcCCCCCC
Confidence 98876653
No 12
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.6e-46 Score=383.78 Aligned_cols=316 Identities=25% Similarity=0.281 Sum_probs=243.6
Q ss_pred eCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCCCCceEEEEcCCCCccHHHHHHHHHHHhhcCCCC
Q 013570 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFS 131 (440)
Q Consensus 52 dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~ 131 (440)
+++.+++ .++||+.+|-..| |.++.+|.+ +|+ |++ . +. +. ++..+ +
T Consensus 59 ~~~~~~~--~d~vv~spgi~~~-~~~~~~a~~-~g~--------------~v~-~------~~-el---~~~~~-----~ 104 (438)
T PRK03806 59 NDEWLLA--ADLIVASPGIALA-HPSLSAAAD-AGI--------------EIV-G------DI-EL---FCREA-----Q 104 (438)
T ss_pred CHHHhcC--CCEEEECCCCCCC-CHHHHHHHH-CCC--------------eEE-E------HH-HH---Hhhhc-----C
Confidence 4566777 8999999999988 999999999 775 322 2 21 11 12222 2
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcE
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~v 211 (440)
.++|+||||||||||++||+++|+..|.++. ..|| +|.|.. ..+..+.+++|+|+|+++. +....++|++
T Consensus 105 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~-~~gn----ig~p~~-~~~~~~~~~~V~E~ss~~l----~~~~~~~p~i 174 (438)
T PRK03806 105 APIVAITGSNGKSTVTTLVGEMAKAAGWKVG-VGGN----IGLPAL-SLLDQECELYVLELSSFQL----ETTSSLKAAA 174 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE-EeCC----cchhHH-HhhccCCCEEEEEccchhh----ccCcccCCCE
Confidence 5799999999999999999999988888763 5666 677752 2345577999999987653 2345679999
Q ss_pred EEEcCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEcC
Q 013570 212 RVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (440)
Q Consensus 212 aviTNi~~dHl~~~-gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~ 290 (440)
+|||||++||+++| +|+|+|+++|.+|++. .+.+|+|.||+....+... ..++++|+.+. .++.+.. .
T Consensus 175 aViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~-~~~~~~~--~---- 243 (438)
T PRK03806 175 ATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRGA-DKRCVSFGVNM-GDYHLNR--Q---- 243 (438)
T ss_pred EEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHhcC-CceEEEEecCC-CceEEEe--c----
Confidence 99999999999999 6999999999999974 4789999999988775422 24678888643 3444322 1
Q ss_pred CeEEEEEeecCe-EEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCC
Q 013570 291 LGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (440)
Q Consensus 291 ~~~~f~~~~~~~-~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahn 369 (440)
.+..+.+...+. ...++++++|.||++|+++|++++..+|+++++|.++|++|++++||||.+...+++.+|+|+||||
T Consensus 244 ~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~lgi~~~~i~~~L~~f~~~~gR~E~v~~~~~~~~i~Ds~a~n 323 (438)
T PRK03806 244 QGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQLVLEHNGVRWINDSKATN 323 (438)
T ss_pred CCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCeEEEEEeeCCEEEEEcCCCCC
Confidence 122222221111 1146789999999999999999999999999999999999999999999997656888999999999
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhh
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVV 431 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~ 431 (440)
|+|++++++.++. .+|+++|+|+|.+.++.+ ++.+.+.+. ...++++|+....
T Consensus 324 ~~a~~~al~~l~~---~~~~i~IlG~~~k~~d~~-----~l~~~l~~~-~~~v~~~g~~~~~ 376 (438)
T PRK03806 324 VGSTEAALNGLHV---DGTLHLLLGGDGKSADFS-----PLARYLNGD-NIRLYCFGRDGAQ 376 (438)
T ss_pred HHHHHHHHHhCcc---CCcEEEEECCcCCCCCHH-----HHHHHHHhh-CcEEEEECCCHHH
Confidence 9999999999962 368999999988876543 477777665 4589999987643
No 13
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.6e-46 Score=386.10 Aligned_cols=269 Identities=25% Similarity=0.285 Sum_probs=217.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhH--HhcccCCCcEEEEeeccCCcchHHhhccccC
Q 013570 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS--LIGIDRAVDIAVLEMGMSGKGEILELARMAR 208 (440)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~--l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~ 208 (440)
+.++||||||||||||++||+++|+..+.++. +.|| +|.|++ +.... +.+++|+|+|+++.+++. ++
T Consensus 116 ~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~-~~gn----iG~p~~~~~~~~~-~~~~~VlE~~~~~~~~~~-----~~ 184 (458)
T PRK01710 116 PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTW-VGGN----IGTPLFSNIEEIK-EEDKVVLELSSFQLMTMD-----VS 184 (458)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEE-ECCc----cChhHHHHHhhCC-CCCEEEEEcCccccccCC-----CC
Confidence 35899999999999999999999988887763 5666 788876 33333 679999999998876542 59
Q ss_pred CcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCC---cceEEEece
Q 013570 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG---CDVRLVAAQ 285 (440)
Q Consensus 209 p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~---ad~~~~~~~ 285 (440)
||++|||||++|||++|+|+|+|+++|.++++.+++++.+|+|.||+....+......++++||...+ .++.. .
T Consensus 185 PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~Dd~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~-~-- 261 (458)
T PRK01710 185 PEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNKDNEITNGMEKEAKGDVVKFSRKEKVYEGAYLK-N-- 261 (458)
T ss_pred CCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHhhcCCcEEEEeCCCCCCCceEEe-C--
Confidence 99999999999999999999999999999999888889999999999887765221246889986431 12211 1
Q ss_pred EEEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEec
Q 013570 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365 (440)
Q Consensus 286 i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Ds 365 (440)
. .+.+.+......+.++++|.||++|+++|++++..+ ++++.|.++|++|++++||||.+...+++++|+||
T Consensus 262 -----~--~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~~-i~~~~i~~~L~~f~~~~~R~e~~~~~~g~~~i~Ds 333 (458)
T PRK01710 262 -----G--KLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVNDD-VSIESMKKVATTFSGVEHRCEFVREINGVKYYNDS 333 (458)
T ss_pred -----C--EEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHhC-CCHHHHHHHHHhCCCCCcceEEEEEECCEEEeccc
Confidence 0 111111100114678999999999999999999987 99999999999999999999998755789999999
Q ss_pred CCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhh
Q 013570 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQ 432 (440)
Q Consensus 366 yahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~ 432 (440)
|||||+||.++|+.+. +++++|+|+ ..++..|+++++.+... ++.||++|+.....
T Consensus 334 y~~np~s~~~al~~~~-----~~~i~IlGg-----~~~~~~~~~l~~~~~~~-~~~vi~~G~~~~~~ 389 (458)
T PRK01710 334 IASSPTRTLAGLKAFE-----KPVILIAGG-----YDKKIPFEPLAEEGYEK-IKTLILMGATKNKI 389 (458)
T ss_pred ccCCHHHHHHHHHhCC-----CCEEEEeCC-----cCCCCCHHHHHHHHHhh-ccEEEEECCCHHHH
Confidence 9999999999999873 368999985 45577899999998754 99999999987533
No 14
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.7e-45 Score=366.16 Aligned_cols=296 Identities=23% Similarity=0.288 Sum_probs=247.6
Q ss_pred CceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHh
Q 013570 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179 (440)
Q Consensus 100 ~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~ 179 (440)
++|++.=+ +. |+.+.+. ...|+|+||+|||||++||+++|++.|.++....|..-+..|.-.
T Consensus 90 ~ipi~~r~--------e~---Laelm~~----~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~~g~na--- 151 (459)
T COG0773 90 GIPVISRA--------EM---LAELMRF----RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNFGTNA--- 151 (459)
T ss_pred CCCeEcHH--------HH---HHHHHhC----CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcccccCCccc---
Confidence 67887444 34 4444433 568999999999999999999999999988655664333333211
Q ss_pred cccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHh
Q 013570 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259 (440)
Q Consensus 180 ~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~ 259 (440)
...+.+|.|+|+++|... .. .++|+++|+|||..||+|+|+++|++.++...+++.++..|.+|+|.|||.+++
T Consensus 152 -~~g~~~~fV~EADEsD~s----Fl-~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v~~~dd~~l~~ 225 (459)
T COG0773 152 -RLGSGDYFVAEADESDSS----FL-HYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAVVCGDDPNLRE 225 (459)
T ss_pred -ccCCCceEEEEecccccc----cc-cCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEEEECCCHHHHH
Confidence 112348999999987642 11 269999999999999999999999999999999999999999999999999999
Q ss_pred hcCC-CCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecC-eEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHH
Q 013570 260 LTVP-RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337 (440)
Q Consensus 260 ~~~~-~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~-~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~ 337 (440)
+..+ ...++++||.+.++|+++.+ ++....+..|++...+ ...++++|++|+||+.|+++|+++|..+|++++.|+
T Consensus 226 l~~~~~~~~v~tyG~~~~ad~~a~n--i~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~Gi~~~~i~ 303 (459)
T COG0773 226 LLSRGCWSPVVTYGFDDEADWRAEN--IRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVARELGIDPEAIA 303 (459)
T ss_pred HHhcccCCcEEeecCCCcCcEEEEE--eEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHHHHHHcCCCHHHHH
Confidence 7622 33679999998669999999 9988888888886553 345899999999999999999999999999999999
Q ss_pred HHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCC-CcEEEEEcCCCCCChhcHHHHHHHHHHHHH
Q 013570 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN-GKRVVILGDMLELGSTERESHEKILSYCCD 416 (440)
Q Consensus 338 ~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~-~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~ 416 (440)
++|++|+++.+|||+....+++++||| |||+|..++++|+++|...+. +|+++||-. ..-.|....+.+.++.+.
T Consensus 304 ~aL~~F~GvkRRfe~~g~~~~~~viDD-YaHHPtEI~aTL~aaR~~~~~~~rIvaifQP--HrySRt~~~~~dF~~~l~- 379 (459)
T COG0773 304 EALASFQGVKRRFELKGEVNGVTVIDD-YAHHPTEIKATLAAARQKVPGGKRIVAVFQP--HRYSRTRDLLDDFAKALS- 379 (459)
T ss_pred HHHHhCCCcceeeEEeeeECCEEEEec-CCCCHHHHHHHHHHHHHhcCCCceEEEEECC--CchHhHHHHHHHHHHHHh-
Confidence 999999999999998888789999999 999999999999999998863 789999965 455678888899999884
Q ss_pred cCCCEEEEEc
Q 013570 417 ACIDLIGLVG 426 (440)
Q Consensus 417 ~~~d~vi~~G 426 (440)
.+|.|+++.
T Consensus 380 -~AD~v~l~~ 388 (459)
T COG0773 380 -DADEVILLD 388 (459)
T ss_pred -cCCEEEEec
Confidence 379999985
No 15
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.7e-46 Score=382.67 Aligned_cols=268 Identities=22% Similarity=0.285 Sum_probs=216.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcE
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~v 211 (440)
.++||||||||||||++||+++|+..|.++ .+.|| +|.|... .+..+.+++|+|+|+++. . ....++|++
T Consensus 108 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~-~~~gn----iG~~~~~-~~~~~~~~~V~E~ss~~l---~-~~~~~~p~i 177 (438)
T PRK04663 108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKV-AVGGN----IGVPALD-LLEQDAELYVLELSSFQL---E-TTSSLKLKA 177 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHCCCCE-EEEcc----cCHHHHh-hhcCCCCEEEEEcChhhh---c-cCcccCCCE
Confidence 579999999999999999999998888775 35666 7888632 344567999999997764 2 234689999
Q ss_pred EEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEcCC
Q 013570 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291 (440)
Q Consensus 212 aviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~ 291 (440)
+|||||++||||+|+|+|+|+++|.++|+. .+.+|+|.||+....... ..++++||.+. .++.+.. ..
T Consensus 178 avitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~dd~~~~~~~~--~~~~~~~g~~~-~~~~~~~------~~ 245 (438)
T PRK04663 178 AAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNRDDKQTYPDHA--ELQLVTFGFDQ-QDFGLAQ------HQ 245 (438)
T ss_pred EEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeCCCHHHHhhhc--CCcEEEEecCC-CCCCeEe------cC
Confidence 999999999999999999999999999975 379999999998654432 25788999754 2332211 12
Q ss_pred eEEEEEeecC-eEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCH
Q 013570 292 GVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370 (440)
Q Consensus 292 ~~~f~~~~~~-~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp 370 (440)
+..|.+...+ ....++++++|.||++|+++|++++..+|+++++|+++|++|++++||||++...+++.+|||+||+||
T Consensus 246 ~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~lGi~~~~i~~~L~~f~g~~~R~e~v~~~~g~~~idDs~~tn~ 325 (438)
T PRK04663 246 GREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAAGVDYRKALDALKSYTGLTHRCQVVADNHGIKWVNDSKATNV 325 (438)
T ss_pred CeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEeeeeCCcEEEeCCCcCCH
Confidence 3344443221 112478899999999999999999999999999999999999999999999976578899999999999
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 371 ~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
+|+.++|+.+. . .+|+|+|+|+|.|+|+. .++++.+.+.. +.|+++|+...
T Consensus 326 ~s~~~Al~~~~--~-~~~~i~IlGg~~~~~~~-----~~l~~~~~~~~-~~vi~~G~~~~ 376 (438)
T PRK04663 326 ASTLAALSGLE--I-EGKLYLLVGGVGKGADF-----SPLKPVLATLN-LQLCCFGEDGD 376 (438)
T ss_pred HHHHHHHHhcc--c-CCcEEEEECCccCCCCH-----HHHHHHHHhhC-cEEEEECCCHH
Confidence 99999999885 2 36899999999998875 46788877664 69999998774
No 16
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=7.7e-45 Score=376.72 Aligned_cols=279 Identities=24% Similarity=0.317 Sum_probs=222.7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCC-eEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCc
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVN-VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~-~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~ 210 (440)
.++|+||||||||||++||+++|+..|++ +....|+.++. +.+.. ..+.+++|+|+|+++. .. ..++|+
T Consensus 107 ~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~-~~~~~----~~~~~~~V~E~ss~q~-~~----~~~~p~ 176 (461)
T PRK00421 107 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAA-GTNAR----LGNSDYFVAEADESDR-SF----LKLHPD 176 (461)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceeccC-Ccccc----cCCCCEEEEECCCccc-hH----hhcCCC
Confidence 37999999999999999999999999865 33344554433 44432 2367999999986543 21 247999
Q ss_pred EEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEcC
Q 013570 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (440)
Q Consensus 211 vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~ 290 (440)
++|||||++||+++|||+|+|+++|.+++..+++++.+|+|.||+....+......++++|+...++++...+ +....
T Consensus 177 vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 254 (461)
T PRK00421 177 IAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVACGDDPELRELLPRVSRPVITYGFSEDADFRAEN--IRQDG 254 (461)
T ss_pred EEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEE--EEEcC
Confidence 9999999999999999999999999999998888899999999998877762222578999986666777665 55554
Q ss_pred CeEEEEEeecC-eEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCC
Q 013570 291 LGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (440)
Q Consensus 291 ~~~~f~~~~~~-~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahn 369 (440)
.+..|.+...+ ....++++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++.+|+| ||||
T Consensus 255 ~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~~~~lgv~~~~i~~~l~~f~~~~~R~e~~~~~~g~~~i~D-~aHn 333 (461)
T PRK00421 255 GGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAVALELGIDDEAIREALATFKGVKRRFEEKGEVGGVVLIDD-YAHH 333 (461)
T ss_pred CceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcccEEEEecCCcEEEEe-CCCC
Confidence 56667765432 222478999999999999999999999999999999999999999999999987668899999 9999
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcC
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~ 427 (440)
|+++++++++++.+.+.+|+++|||.. ...+.+++...+++.+ +. .|.++++..
T Consensus 334 p~~~~a~~~al~~~~~~~~i~~v~gp~--~~~r~kd~~~~~~~~l-~~-~d~vi~~~~ 387 (461)
T PRK00421 334 PTEIKATLKAARQGYPDKRIVAVFQPH--RYSRTRDLLDEFAEAL-SD-ADEVILLDI 387 (461)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECCC--CCccHHHHHHHHHHHH-HH-CCEEEEcCc
Confidence 999999999999865346889999841 2245556666788877 54 799999844
No 17
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6e-45 Score=376.14 Aligned_cols=269 Identities=26% Similarity=0.327 Sum_probs=214.0
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcc---cCCCcEEEEeeccCCcchHHhhcccc
Q 013570 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI---DRAVDIAVLEMGMSGKGEILELARMA 207 (440)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~---~~~~~~~VlE~g~~~~g~~~~~~~~~ 207 (440)
+.++|+||||||||||++||+++|+..|.++ ...|| +|.|++.... ..+.|++|+|+|+++. +. ...+
T Consensus 109 ~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~-~~~Gn----iG~~~~~~~~~~~~~~~d~~VlE~~~~~l---~~-~~~~ 179 (445)
T PRK04308 109 GDKVIAITGSNGKTTVTSLVGYLCIKCGLDT-VIAGN----IGTPVLEAELQREGKKADVWVLELSSFQL---EN-TESL 179 (445)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHHcCCCe-EEeCC----ccHHHHHHHHhhcCCCCcEEEEEeChHHh---Cc-Cccc
Confidence 3589999999999999999999998888775 45676 7777644322 3468999999986432 22 4568
Q ss_pred CCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEE
Q 013570 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287 (440)
Q Consensus 208 ~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~ 287 (440)
+|+++|||||++||+++|+|+|+|+++|++|++ +++.+|+|.||+....+... +.++++|+.+.+++++...
T Consensus 180 ~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i~n~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~---- 251 (445)
T PRK04308 180 RPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLNADDAFCRAMKRA-GREVKWFSLEHEADFWLER---- 251 (445)
T ss_pred CCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEEEeCCcHHHHHHhhc-CCcEEEecCCCCCceeEec----
Confidence 999999999999999999999999999999995 36899999999987776522 3578899876545554322
Q ss_pred EcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCC
Q 013570 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367 (440)
Q Consensus 288 ~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya 367 (440)
. .+. +.+.+......++++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++++|||+|+
T Consensus 252 -~-~~~-~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~~~~~iDDs~~ 328 (445)
T PRK04308 252 -E-TGR-LKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGEKNGVVFIDDSKG 328 (445)
T ss_pred -c-CCE-EEEcCceeeehhccCCcChhhHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEeeCCeEEEEcCCC
Confidence 1 111 3222221111367899999999999999999999999999999999999999999999987678899999999
Q ss_pred CCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 368 hnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
|||+|++++++.+. +++++|+|+|.+.++.++ +.+.+.+. +|.|+++|+...
T Consensus 329 ~n~~s~~~al~~~~-----~~~i~IlGg~~~~~~~~~-----~~~~l~~~-~~~vil~G~~~~ 380 (445)
T PRK04308 329 TNVGATAAAIAGLQ-----NPLFVILGGMGKGQDFTP-----LRDALAGK-AKGVFLIGVDAP 380 (445)
T ss_pred CCHHHHHHHHHhCC-----CCEEEEeCCCCCCCCHHH-----HHHHHHHh-CcEEEEECCCHH
Confidence 99999999999872 468999999988886543 34445554 799999998764
No 18
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=7.5e-45 Score=374.25 Aligned_cols=268 Identities=27% Similarity=0.368 Sum_probs=213.8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchh-hHHhcccCCCcEEEEeeccCCcchHHhhccccCCc
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA-LSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p-~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~ 210 (440)
.++|+||||||||||++||+++|+..|.++ ...|| +|.| ++++.. .+.+++|+|+|+++. . ....++|+
T Consensus 102 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~-~~~gn----ig~~~~~~~~~-~~~~~~V~E~~~~~l---~-~~~~~~p~ 171 (433)
T TIGR01087 102 LPVVAITGTNGKTTTTSLLYHLLKAAGLKA-FLGGN----IGTPALEVLDQ-EGAELYVLELSSFQL---E-TTESLRPE 171 (433)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCe-EEECc----cCHHHHHHHhc-cCCCEEEEEcChhHh---c-CCcccCCC
Confidence 689999999999999999999999888875 34565 6777 444332 578999999985432 2 34567999
Q ss_pred EEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEcC
Q 013570 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (440)
Q Consensus 211 vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~ 290 (440)
++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.||+....+..+...++++||.+.+.+.. +....
T Consensus 172 iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~ 246 (433)
T TIGR01087 172 IALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWFSVEKDAERG-----LCIRD 246 (433)
T ss_pred EEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEECCCHHHHHhhhhcCceEEEEeCCccCCCc-----eEEEC
Confidence 9999999999999999999999999999998888899999999998776653223678999865422211 11111
Q ss_pred CeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCH
Q 013570 291 LGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370 (440)
Q Consensus 291 ~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp 370 (440)
++..|.. . .++++++|.||++|+++|++++..+|++++.|+++|++|++++||||++...+++.+|+|+|+|||
T Consensus 247 ~~~~~~~--~----~~~l~l~G~hn~~Na~aAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~g~~~idD~~atn~ 320 (433)
T TIGR01087 247 GGLYLKP--N----DLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHRLEYVGQKNGVHFYNDSKATNV 320 (433)
T ss_pred CEEEEec--c----ccccCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEECCEEEEEcCCCCCH
Confidence 2222211 1 367899999999999999999999999999999999999999999999976578999999779999
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhh
Q 013570 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVV 431 (440)
Q Consensus 371 ~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~ 431 (440)
+|+.++++.+. +++++|+|+|.+.++. +++.+.+.+. .+.|+++|+....
T Consensus 321 ~a~~~al~~~~-----~~ii~I~Gg~~~~~d~-----~~~~~~l~~~-~~~v~~~G~~~~~ 370 (433)
T TIGR01087 321 HATLAALSAFD-----NPVILIVGGDDKGADF-----SPLAPAAAGK-VKAVLAIGEDAAK 370 (433)
T ss_pred HHHHHHHHhCC-----CCEEEEEcCCCCCCCH-----HHHHHHHHhh-CCEEEEECCCHHH
Confidence 99999999883 3689999998765543 4567777665 7899999987653
No 19
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=1.5e-44 Score=373.29 Aligned_cols=275 Identities=20% Similarity=0.240 Sum_probs=215.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHhCCCCeE----EecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccc--
Q 013570 133 VLVGVTGSVGKSTTKSMIALALESLGVNVF----QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM-- 206 (440)
Q Consensus 133 ~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~----~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~-- 206 (440)
++||||||||||||++||+++|++.|+++. .+.|| +|.|..+ .+.+++|+|+|+++.+++.++.++
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn----~G~~~~~----~~~~~~V~E~~s~~~~~~~~l~~~~~ 174 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN----FGVSARL----GESPFFVIEADEYDTAFFDKRSKFVH 174 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCccccc----Ccccccc----CCCCEEEEEccCcCccccccccceee
Confidence 499999999999999999999998888753 34566 4677642 357999999999988877776666
Q ss_pred cCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcC-CCCCcEEEEeccCCcceEEEece
Q 013570 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAAQ 285 (440)
Q Consensus 207 ~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~-~~~~~vi~~g~~~~ad~~~~~~~ 285 (440)
++|+++|||||++||+++|+|+|+|+++|.+|++.+++.+.+|+|.||+.+..+.. ....++.+|+.. .+++...
T Consensus 175 ~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-- 250 (448)
T TIGR01081 175 YRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTVPGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQ--GEWQAEK-- 250 (448)
T ss_pred cCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHhccCCCeEEECCC--CCEEEEE--
Confidence 59999999999999999999999999999999998777789999999998776542 111356677642 3555544
Q ss_pred EEEcCCeEEEEEeecC-eEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEe
Q 013570 286 VANGGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVND 364 (440)
Q Consensus 286 i~~~~~~~~f~~~~~~-~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~D 364 (440)
+. .++..|.+...+ ....++++++|.||++|+++|++++..+|++++.+.++|++|++++||||++...+++.+|+|
T Consensus 251 ~~--~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~~~~g~~ii~D 328 (448)
T TIGR01081 251 IT--ADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAIAAARHVGVAIEDACEALGSFVNAKRRLELKGEANGITVYDD 328 (448)
T ss_pred Ee--cCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEEecCCeEEEEe
Confidence 43 234455543321 222578899999999999999999999999999999999999999999999875467899999
Q ss_pred cCCCCHHHHHHHHHHHhcccCCCcEEEEEcC---CCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCc
Q 013570 365 AYNANPISTRAAIDLLKDIACNGKRVVILGD---MLELGSTERESHEKILSYCCDACIDLIGLVGDR 428 (440)
Q Consensus 365 syahnp~s~~~al~~l~~~~~~~r~i~VlG~---m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~ 428 (440)
|||||+|++++++++++..+.+|+++|||+ |.|+|...+ ++ ..+.+. +|.++++|..
T Consensus 329 -~ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~~~~lg~~~~----~l-~~~~~~-~d~vi~~~~~ 388 (448)
T TIGR01081 329 -FAHHPTAIEATLQGLRQKVGGARILAVLEPRSNTMKLGVHKD----DL-APSLGR-ADQVFLYQPG 388 (448)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCeEEEEECCCcchhhhhhHHH----HH-HHHHHh-CCEEEEcCCC
Confidence 699999999999999876534567899995 334442222 23 333343 8999999864
No 20
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.8e-44 Score=374.80 Aligned_cols=364 Identities=24% Similarity=0.246 Sum_probs=247.7
Q ss_pred cCHHHHHHHhCCeecccCCCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCC------C-
Q 013570 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN------W- 99 (440)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~------~- 99 (440)
+++..++...|..+ ..+|++...+....|+-+..|.+++...|.++.++ ++..||+++..+. |
T Consensus 20 ~s~a~~L~~~G~~v--------~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~--~~d~vv~sp~I~~~~~~~~~~ 89 (498)
T PRK02006 20 LAMARWCARHGARL--------RVADTREAPPNLAALRAELPDAEFVGGPFDPALLD--GVDLVALSPGLSPLEAALAPL 89 (498)
T ss_pred HHHHHHHHHCCCEE--------EEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhc--CCCEEEECCCCCCcccccCHH
Confidence 45666666655332 33666554431012433323545555556666665 7888998875532 1
Q ss_pred -------CceEEE-EcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCC
Q 013570 100 -------DKGFVQ-VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171 (440)
Q Consensus 100 -------~~~~i~-V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~ 171 (440)
++|++. ++ ...+.+..++ .|.+..++|+||||||||||++||+++|+..|+++. ..||.+
T Consensus 90 ~~~a~~~~i~v~~~~e-----~~~~~~~~l~----~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~-~~Gni~-- 157 (498)
T PRK02006 90 VAAARERGIPVWGEIE-----LFAQALAALG----ASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA-VAGNIS-- 157 (498)
T ss_pred HHHHHHCCCcEEEHHH-----HHHHHHhhhc----cccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE-EECCCC--
Confidence 566663 22 2222222222 223345899999999999999999999999998874 456643
Q ss_pred cchhhH--Hhc-ccCC--CcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCc
Q 013570 172 VGVALS--LIG-IDRA--VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD 246 (440)
Q Consensus 172 ~g~p~~--l~~-~~~~--~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~ 246 (440)
.+.. +.. +..+ .+++|+|+|+++. .....++|+++|||||++||+++|+|+|+|+++|.++++ +++
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~V~E~ss~~l----~~~~~~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~---~~~ 228 (498)
T PRK02006 158 --PAALDKLMEAIDAGALPDVWVLELSSFQL----ETTHTLAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG---PRT 228 (498)
T ss_pred --HHHHHHHHHhhccCCCCcEEEEEccHHHh----CcccccCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC---CCC
Confidence 2211 111 2222 4899999986432 234567999999999999999999999999999999996 478
Q ss_pred EEEEeCCcHHHHhhcCC-CCCcEEEEeccCC---cceEEEe-c--eEEEcCCeEEEEEeec-----C-----------eE
Q 013570 247 VCVLNADDPLVANLTVP-RGVRKVFFGWRRG---CDVRLVA-A--QVANGGLGVQVVLEKE-----R-----------EM 303 (440)
Q Consensus 247 ~~Vln~dd~~~~~~~~~-~~~~vi~~g~~~~---ad~~~~~-~--~i~~~~~~~~f~~~~~-----~-----------~~ 303 (440)
.+|+|.||+....+... ...++++||...+ .++.+.. . .+........|.+... + ..
T Consensus 229 ~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (498)
T PRK02006 229 VRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPAPSRRRKKDAAPPPDIRLKRL 308 (498)
T ss_pred EEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecCCeEEEEecCcccccccccccccccccccccccchhce
Confidence 99999999998877622 1246889987531 2333321 0 0001111111111000 0 00
Q ss_pred EE-EEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhc
Q 013570 304 VK-FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382 (440)
Q Consensus 304 ~~-~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~ 382 (440)
.. ++++++|.||++|+++|++++..+|++++.++++|++|++++||||++...+++.+|||+|+|||+|+.++|+.+
T Consensus 309 ~~~~~l~l~G~hn~~NalaAia~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~~~g~~~idDs~~tn~~s~~~al~~~-- 386 (498)
T PRK02006 309 MPADALRIRGLHNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVELVATIDGVDYYDDSKGTNVGATVAALDGL-- 386 (498)
T ss_pred eeHhhcCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhC--
Confidence 11 468999999999999999999999999999999999999999999999765788999999999999999999987
Q ss_pred ccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhh
Q 013570 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQ 432 (440)
Q Consensus 383 ~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~ 432 (440)
.+|+++|+|+|.+.++.. .+.+.+.+. +|.||++|+.....
T Consensus 387 ---~~~ii~IlGg~~~~~~~~-----~~~~~l~~~-~~~vi~~G~~~~~i 427 (498)
T PRK02006 387 ---AQRVVLIAGGDGKGQDFS-----PLAAPVARH-ARAVVLIGRDAPAI 427 (498)
T ss_pred ---CCCEEEEEcCCCCCCCHH-----HHHHHHHHh-CCEEEEEcCCHHHH
Confidence 257999999987755432 234444444 79999999876533
No 21
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.9e-44 Score=369.61 Aligned_cols=273 Identities=23% Similarity=0.261 Sum_probs=214.8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcE
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~v 211 (440)
.++|+||||||||||++||+++|+..|.++ ...|| +|.|... .+..+.+++|+|+|+++. +....++|++
T Consensus 108 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~-~~ggn----ig~p~~~-~~~~~~~~~V~E~ss~~l----~~~~~~~P~i 177 (448)
T PRK03803 108 APVIAITGSNGKSTVTTLVGEMAKAAGKRV-AVGGN----IGTPALD-LLSDDPELYVLELSSFQL----ETTHSLNAEV 177 (448)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCe-EEecC----cCHHHHH-HhcCCCCEEEEEcChhhh----CcCcccCccE
Confidence 579999999999999999999998888765 35566 6777632 223467999999986543 3456689999
Q ss_pred EEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCC--cceEEEeceEEEc
Q 013570 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG--CDVRLVAAQVANG 289 (440)
Q Consensus 212 aviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~--ad~~~~~~~i~~~ 289 (440)
+|||||++||+++|+|+|+|+++|.+|++. .+.+|+|.||+....+... ..++++||.+.+ .++. +..
T Consensus 178 aVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~-----~~~- 247 (448)
T PRK03803 178 ATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNRDDALTRPLVPD-NQPCLSFGLNAPDFDEWG-----LRE- 247 (448)
T ss_pred EEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHhhc-CCcEEEEeCCCCCcCceE-----EEe-
Confidence 999999999999999999999999999974 4789999999988776522 256889986531 1222 211
Q ss_pred CCeEEEEEeecCeE-EEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCC
Q 013570 290 GLGVQVVLEKEREM-VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368 (440)
Q Consensus 290 ~~~~~f~~~~~~~~-~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyah 368 (440)
..+..|.+...... ..++++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++.+|||+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~gv~~idDs~at 327 (448)
T PRK03803 248 GDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAAGLPKEAMLEVLRTFTGLPHRCEWVREVAGVDYYNDSKGT 327 (448)
T ss_pred cCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEeCCeEEEEcCCcC
Confidence 12233433322111 13678999999999999999999999999999999999999999999999765788999998899
Q ss_pred CHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhh
Q 013570 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVV 431 (440)
Q Consensus 369 np~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~ 431 (440)
||+|+.++++.+++.. .+|+++|+|+|.+.++. +.+.+.+.+. ++.++++|+....
T Consensus 328 N~~a~~~al~~l~~~~-~~~iilI~Gg~~k~~d~-----~~l~~~l~~~-~~~vil~G~~~~~ 383 (448)
T PRK03803 328 NVGATVAAIEGLGAHI-QGKLVLIAGGDGKGADF-----SPLREPVAKY-VRAVVLIGRDADK 383 (448)
T ss_pred CHHHHHHHHHhhhhcC-CCCEEEEECCCCCCCCH-----HHHHHHHHhh-CCEEEEECCCHHH
Confidence 9999999999997643 36899999998875544 3466666665 7999999987653
No 22
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4e-44 Score=371.74 Aligned_cols=265 Identities=26% Similarity=0.363 Sum_probs=205.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhH-HhcccCCCcEEEEeeccCCcchHHhhccccCCcE
Q 013570 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS-LIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (440)
Q Consensus 133 ~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~-l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~v 211 (440)
++||||||||||||++||+++|+..|.++. +.|| +|.|++ .+....+.+++|+|+|+++. .+...++||+
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~-~~Gn----ig~p~~~~l~~~~~~~~~V~E~ss~~l----~~~~~~~pdi 192 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQ-AVGN----IGVPVSAALVAQPRIDVLVAELSSFQL----HWSPTLTPDV 192 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEE-Eecc----CChhHHHHHhcCCCCCEEEEecCCccc----ccCcccCCCE
Confidence 699999999999999999999988888764 6777 677765 34445678999999996653 2345689999
Q ss_pred EEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCC-CCCcEEEEeccCCc--c--eEEEeceE
Q 013570 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGC--D--VRLVAAQV 286 (440)
Q Consensus 212 aviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~-~~~~vi~~g~~~~a--d--~~~~~~~i 286 (440)
+|||||++||+|+|+|+|+|+++|.+||+ .+.+|+|.||+.+..+... ...++++||...+. + +.... +
T Consensus 193 aViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~~~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 266 (473)
T PRK00141 193 GVVLNLAEDHIDWHGSMRDYAADKAKVLR----GPVAVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGE--L 266 (473)
T ss_pred EEEcCCChhhccccCCHHHHHHHHHHHhh----CCEEEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCE--E
Confidence 99999999999999999999999999996 3689999999998777521 12468899875321 2 22222 3
Q ss_pred EEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecC
Q 013570 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAY 366 (440)
Q Consensus 287 ~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsy 366 (440)
.....+..+.+.. .+.++++|.||++|+++|++++..+|++.+.+.++|++|++++||||++...++..+|||+|
T Consensus 267 ~~~~~~~~~~~~~-----~~~~~l~G~hn~~Na~aA~a~~~~lgi~~~~i~~~l~~~~~~~~R~e~~~~~~~~~iiDdsy 341 (473)
T PRK00141 267 VDNAFGQNVVLAS-----AEGISPAGPAGVLDALAAAAVARSQGVAPEAIARALSSFEVAGHRGQVVAEHGGVTWIDNSK 341 (473)
T ss_pred EEecCCCceEEee-----hhhcCCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEeCCEEEEEcCC
Confidence 2222222232221 34689999999999999999999999999999999999999899999997657889999988
Q ss_pred CCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 367 ahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
||||+|++++++.++ ++++|+|+|... +..+.+.+.+... .+.++++|+..
T Consensus 342 ahNp~s~~~~l~~l~------~~~~i~gG~~kd-----kd~~~~~~~l~~~-~~~~~~~~~~r 392 (473)
T PRK00141 342 ATNPHAADAALAGHE------SVVWVAGGQLKG-----ADIDDLIRTHAPR-IKAAVVLGVDR 392 (473)
T ss_pred CCCHHHHHHHHHhcC------CEEEEecCccCC-----CChHHHHHHHHhh-ccEEEEECCCH
Confidence 999999999999983 578899765432 2334555555554 67788887553
No 23
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.9e-44 Score=372.95 Aligned_cols=307 Identities=24% Similarity=0.256 Sum_probs=220.6
Q ss_pred CCeEEEeccccCCC----------CceEEEEcCCCCccHHHHHHHHH-HHhhcCCCCCcEEEEeCCCChHHHHHHHHHHH
Q 013570 86 GCVGVIGNQVCNNW----------DKGFVQVEGNGNVNTLNSLVNMA-CYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 86 Ga~~vv~~~~~~~~----------~~~~i~V~~~~~~d~~~al~~la-~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL 154 (440)
++..||.++..+.. ++|++ . ++..++.... .+|.. +.++||||||||||||++||+++|
T Consensus 70 ~~D~VV~SpGi~~~~p~~~~a~~~gi~v~--~-----~iel~~~~~~~~~~~~---~~~vIgITGTnGKTTTt~li~~iL 139 (488)
T PRK03369 70 DYALVVTSPGFRPTAPVLAAAAAAGVPIW--G-----DVELAWRLDAAGCYGP---PRRWLVVTGTNGKTTTTSMLHAML 139 (488)
T ss_pred cCCEEEECCCCCCCCHHHHHHHHCCCcEe--e-----HHHHhhhhhhhhccCC---CCCEEEEECCCcHHHHHHHHHHHH
Confidence 56677777765431 45554 2 4443333322 23333 236999999999999999999999
Q ss_pred HhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHH
Q 013570 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARA 234 (440)
Q Consensus 155 ~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~ 234 (440)
+..|.++ .+.|| +|.|+.. .+..+.+++|+|+|+. ++.. ...++|+++|||||++||+++|||+|+|+++
T Consensus 140 ~~~g~~~-~~~Gn----iG~p~~~-~~~~~~~~~VlE~ss~---ql~~-~~~~~P~vaVITNI~~DHLd~~gt~e~ya~a 209 (488)
T PRK03369 140 IAAGRRS-VLCGN----IGSPVLD-VLDEPAELLAVELSSF---QLHW-APSLRPEAGAVLNIAEDHLDWHGTMAAYAAA 209 (488)
T ss_pred HHcCCce-EEeCC----CchHHHH-hccCCCCEEEEECChH---HhCc-ccccCCCEEEEcCCCHHHhhhcCCHHHHHHH
Confidence 8888654 45676 7888622 2356789999999854 2333 3568999999999999999999999999999
Q ss_pred HHHhcccCCCCcEEEEeCCcHHHHhhcCC-CCCcEEEEeccCC--cceEEEeceEEEcCCeEEEEEeecCeEEEEEeCcC
Q 013570 235 KGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRG--CDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311 (440)
Q Consensus 235 K~~i~~~~~~~~~~Vln~dd~~~~~~~~~-~~~~vi~~g~~~~--ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~ 311 (440)
|++||+ ++.+|+|.||+....+... .....+.|+...+ .++.+.+..+... .+... ......++++++
T Consensus 210 K~~I~~----~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~l~l~ 280 (488)
T PRK03369 210 KARALT----GRVAVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDR----AFADD-LRLAPVASIPVP 280 (488)
T ss_pred HHHHhc----CCEEEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEECCEEEEe----ccCCc-cceechhhcCCC
Confidence 999996 3899999999988766521 1112334433221 2332222001000 00000 000013578999
Q ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEE
Q 013570 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVV 391 (440)
Q Consensus 312 G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~ 391 (440)
|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++.+|||||||||+|++++|+.+ .++++
T Consensus 281 G~hnv~NalaAla~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~~~~gv~iIDDS~AhNp~s~~aal~~~------~~iil 354 (488)
T PRK03369 281 GPVGVLDALAAAALARAVGVPAGAIADALASFRVGRHRAEVVAVADGITYVDDSKATNPHAARASILAY------PRVVW 354 (488)
T ss_pred cHhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccEEEEcCCCEEEEECCCCCCHHHHHHHHHhC------CCeEE
Confidence 999999999999999999999999999999999999999999876788999999999999999999865 25899
Q ss_pred EEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhhh
Q 013570 392 ILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQC 433 (440)
Q Consensus 392 VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~ 433 (440)
|+|+|.... ....|.+.+.+. ++.++++|+......
T Consensus 355 I~GG~~k~~-----d~~~l~~~l~~~-~~~vi~iG~~~~~i~ 390 (488)
T PRK03369 355 IAGGLLKGA-----SVDALVAEMASR-LVGAVLIGRDRAVVA 390 (488)
T ss_pred EecCcCCCC-----CHHHHHHHHhhh-eeEEEEEcCCHHHHH
Confidence 998866533 234566767665 899999999765443
No 24
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-44 Score=361.34 Aligned_cols=277 Identities=27% Similarity=0.369 Sum_probs=218.4
Q ss_pred HhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhh-HHhcccCCCcEEEEeeccCCcchHHh
Q 013570 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL-SLIGIDRAVDIAVLEMGMSGKGEILE 202 (440)
Q Consensus 124 ~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~-~l~~~~~~~~~~VlE~g~~~~g~~~~ 202 (440)
|++. ....|+|+||||||||||++||+++|++.|.++. ..|| +|.|. ++.......|+.|+|+|+.+. +.
T Consensus 103 ~~r~-~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~-lgGN----IG~p~l~~~~~~~~~d~~VlElSSfQL---~~ 173 (448)
T COG0771 103 FYRL-SGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL-LGGN----IGTPALELLEQAEPADVYVLELSSFQL---ET 173 (448)
T ss_pred HHHh-cCCCCEEEEECCCchHHHHHHHHHHHHhcCCCce-eccc----cCccHHHhhcccCCCCEEEEEcccccc---cc
Confidence 4443 2346799999999999999999999999999873 5677 78774 344445578999999975443 33
Q ss_pred hccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCC-CCCcEEEEeccCCc--ce
Q 013570 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGC--DV 279 (440)
Q Consensus 203 ~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~-~~~~vi~~g~~~~a--d~ 279 (440)
. .-++|++++||||++||||||+|||+|..+|.+|+.++.+ ++|+|.||++...+..+ ....+++|+..... .+
T Consensus 174 ~-~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 250 (448)
T COG0771 174 T-SSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINADDAYLKTLADEATKARVIWFSFGEPLADGD 250 (448)
T ss_pred C-ccCCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeCCcHHHhhhhhhcccceeEEEEccccccccc
Confidence 3 3479999999999999999999999999999999998654 99999999999988732 23467778776542 33
Q ss_pred EEEeceEEEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCe
Q 013570 280 RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGI 359 (440)
Q Consensus 280 ~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~ 359 (440)
++.++.+ . +.++.-...-.++++|.||++|++||+++|..+|++++.|.++|.+|+++++|||.+...+++
T Consensus 251 ~~~~~~~-------~--~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR~e~v~~~~gv 321 (448)
T COG0771 251 YIYDGKL-------V--FKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHRLEFVGEKDGV 321 (448)
T ss_pred eeecchh-------c--cccccccchhhcCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEEecCCE
Confidence 3332111 0 111100003368899999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhh
Q 013570 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQ 432 (440)
Q Consensus 360 ~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~ 432 (440)
.+|+||.|.||+|..++|..+. +++++|+|+....++ ...+.+.+.+. ...+|++|+....+
T Consensus 322 ~f~NDSKATN~~At~~AL~~~~-----~~v~lI~GG~~Kg~d-----f~~L~~~~~~~-~~~~~~~G~~~~~i 383 (448)
T COG0771 322 LFINDSKATNVDATLAALSGFD-----GPVILIAGGDDKGAD-----FSPLAEILAKV-IKKLVLIGEDAEKI 383 (448)
T ss_pred EEecCCCCCCHHHHHHHHHcCC-----CCEEEEECCCCCCCC-----hhHHHHHhhhc-ceEEEEeCCCHHHH
Confidence 9999999999999999999984 589999998443333 46677777775 67899999986543
No 25
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.6e-44 Score=370.49 Aligned_cols=273 Identities=23% Similarity=0.277 Sum_probs=209.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcc-----cCCCcEEEEeeccCCcchHHhhcc
Q 013570 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-----DRAVDIAVLEMGMSGKGEILELAR 205 (440)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~-----~~~~~~~VlE~g~~~~g~~~~~~~ 205 (440)
+.++|+||||||||||++||+++|+..|.++. ..|| +|.|++.+.. ..+.+++|+|+|++. ++.. +
T Consensus 108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~-~~gn----iG~~~~~~~~~~~~~~~~~d~~VlE~~s~~---l~~~-~ 178 (459)
T PRK02705 108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAP-ACGN----IGYAACELALLRSGKAQKPDWIVAELSSYQ---IESS-P 178 (459)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeE-Eecc----cChhHHHHHhhhhccCCCCCEEEEEccccc---cccC-c
Confidence 46899999999999999999999998887763 3455 7888765533 457899999998532 2322 3
Q ss_pred ccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccC-CcceEEEec
Q 013570 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR-GCDVRLVAA 284 (440)
Q Consensus 206 ~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~-~ad~~~~~~ 284 (440)
.++|+++|||||++||+++|||+|+|+++|++|++. .+.+|+|.||+.+..+.... ...++|+.+. ..++...+
T Consensus 179 ~~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 253 (459)
T PRK02705 179 ELAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNGDDPYLRQHRSSW-PKGYWTSTQGKASLLGQAD- 253 (459)
T ss_pred ccCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEECCCHHHHHHHhcC-CceEEeccCCccccccccc-
Confidence 479999999999999999999999999999999964 58999999999887765221 2456776532 11221111
Q ss_pred eEEEcCCeEEEEEeecCeEEE-EEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEE
Q 013570 285 QVANGGLGVQVVLEKEREMVK-FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVN 363 (440)
Q Consensus 285 ~i~~~~~~~~f~~~~~~~~~~-~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~ 363 (440)
......+..+.. +. .... .+++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++.+|+
T Consensus 254 -~~~~~~~~~~~~-~~-~~~~~~~l~l~G~hn~~NalaAia~a~~lgv~~~~i~~~L~~f~~~~gR~e~~~~~~~~~ii~ 330 (459)
T PRK02705 254 -GWILEEGWVVER-GE-PLFPLSALKMPGAHNLQNLLLAVAAARLAGLSAEAIAEALRSFPGVPHRLERIGTINGIDFIN 330 (459)
T ss_pred -eeEecCCEEEEC-Cc-ceeeHHHcCCccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEeeCCcEEEE
Confidence 111112222211 11 1112 3589999999999999999999999999999999999999999999987656889999
Q ss_pred ecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhh
Q 013570 364 DAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVV 431 (440)
Q Consensus 364 Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~ 431 (440)
|+|||||+|++++|+.++ +++++|+|+|.+.|+.+.. .+.+... ++.+|++|+....
T Consensus 331 Ds~a~N~~s~~~al~~l~-----~~~i~IlGg~~~~~d~~~~-----~~~l~~~-~~~vi~~g~~~~~ 387 (459)
T PRK02705 331 DSKATNYDAAEVGLKAVP-----GPVILIAGGEAKQGDDSAW-----LKQIKAK-AAAVLLFGEAAPT 387 (459)
T ss_pred eCCCCCHHHHHHHHHhCC-----CCeEEEecCccCCCCHHHH-----HHHHHhh-eeEEEEECCCHHH
Confidence 999999999999999883 4789999999998877443 3445444 8999999987643
No 26
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=3.2e-43 Score=363.32 Aligned_cols=277 Identities=23% Similarity=0.304 Sum_probs=216.9
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCe-EEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCc
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~-~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~ 210 (440)
.++|+||||||||||++||+++|+..|+++ ....|+. +.|.. -......+++|+|+|+++.. . ..++|+
T Consensus 99 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~----~~~~~-~~~~~~~~~~V~E~s~~q~~-~----~~~~p~ 168 (448)
T TIGR01082 99 RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLV----KEAGT-NARLGSGEYLVAEADESDAS-F----LHLQPN 168 (448)
T ss_pred CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECccc----ccCCc-ccccCCCCEEEEECCCccch-H----hhccCC
Confidence 479999999999999999999999888743 2223332 22110 01113469999999866542 1 347999
Q ss_pred EEEEcCCChhhhc-cCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEecc-CCcceEEEeceEEE
Q 013570 211 IRVVLNVGDSHLE-SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR-RGCDVRLVAAQVAN 288 (440)
Q Consensus 211 vaviTNi~~dHl~-~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~-~~ad~~~~~~~i~~ 288 (440)
++|||||++||+| +|+|+|+|+++|.++++.+++++.+|+|.||+....+......++++|+.. +.+++++.. +..
T Consensus 169 vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~--~~~ 246 (448)
T TIGR01082 169 VAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAVICADDPVLRELVPKATEQVITYGGSGEDADYRAEN--IQQ 246 (448)
T ss_pred EEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEE--EEe
Confidence 9999999999999 999999999999999998888899999999998877662222478899875 345676655 544
Q ss_pred cCCeEEEEEeecC-eEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCC
Q 013570 289 GGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367 (440)
Q Consensus 289 ~~~~~~f~~~~~~-~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya 367 (440)
...+..|.+...+ ....+.++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++.+|+| ||
T Consensus 247 ~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a~~~~lgi~~~~i~~~l~~f~~~~~R~e~~~~~~gv~~i~D-~a 325 (448)
T TIGR01082 247 SGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAVALELGIDFEAILRALANFQGVKRRFEILGEFGGVLLIDD-YA 325 (448)
T ss_pred cCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCccceEEEEeCCeEEEEc-CC
Confidence 4445566665332 223678899999999999999999999999999999999999999999999976678899999 99
Q ss_pred CCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEE
Q 013570 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425 (440)
Q Consensus 368 hnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~ 425 (440)
|||+++++++++++.+.+.+|+++|||. ....+.+..+.++.+.+.. +|.++++
T Consensus 326 hn~~~~~a~~~al~~~~~~~~ii~i~g~--~~~~r~k~~~~~~~~~l~~--~d~v~l~ 379 (448)
T TIGR01082 326 HHPTEIKATLKAARQGYPDKRIVVVFQP--HRYSRTRDLFDDFAKVLSD--ADELILL 379 (448)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECC--CCCccHHHHHHHHHHHHHh--CCEEEEe
Confidence 9999999999999987534578899985 1123445666888888864 7999998
No 27
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2e-43 Score=363.78 Aligned_cols=272 Identities=23% Similarity=0.290 Sum_probs=210.7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcE
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~v 211 (440)
.++||||||||||||++||+++|+..|.++ ...|| +|.|. +....+.+++|+|+|+++. .....++|++
T Consensus 104 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~-~~~Gn----iG~p~--l~~~~~~~~~VlE~ss~ql----~~~~~~~P~i 172 (454)
T PRK01368 104 LKFIAITGTNGKSTTTALISHILNSNGLDY-PVAGN----IGVPA--LQAKASKDGYVLELSSFQL----DLVKTFTAKI 172 (454)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCe-EEEcc----CCHHH--hcccCCCCEEEEEcCchhh----ccccccCCCE
Confidence 579999999999999999999998888876 35666 67775 3344557999999987653 2334579999
Q ss_pred EEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcC----CCCCcEEEEeccCCcceEEEeceEE
Q 013570 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVA 287 (440)
Q Consensus 212 aviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~----~~~~~vi~~g~~~~ad~~~~~~~i~ 287 (440)
+|||||++||||+|+|+|+|+++|.+||+++++++.+|+|.||+....+.. ....++++||.....+. . +.
T Consensus 173 avitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~---~--~~ 247 (454)
T PRK01368 173 AVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPFSVTKILEN---G--IS 247 (454)
T ss_pred EEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHhhcccCceEEEEeCCcccCC---C--cE
Confidence 999999999999999999999999999998888899999999998877641 11247889986532111 1 11
Q ss_pred EcCCeEEEEEeec-CeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecC
Q 013570 288 NGGLGVQVVLEKE-REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAY 366 (440)
Q Consensus 288 ~~~~~~~f~~~~~-~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsy 366 (440)
.......+.+... .....+.++++|.||++|+++|++++..+|++.+.|.++|++|+++|||||++...+++.+|+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~F~~~~~Rle~v~~~~gv~~i~DS~ 327 (454)
T PRK01368 248 VVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYIGSINNISFYNDSK 327 (454)
T ss_pred EECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEEEECCeEEEECCC
Confidence 1112222222111 011256678999999999999999999999999999999999999999999998767889999999
Q ss_pred CCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhh
Q 013570 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQ 432 (440)
Q Consensus 367 ahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~ 432 (440)
||||+|++++++.++ ++++|+|.+. .......+.+.+. .+..+++.|......
T Consensus 328 atN~~a~~~al~~~~------~i~lI~Gg~d-----k~~~~~~L~~~~~--~v~~v~~~g~~~~~l 380 (454)
T PRK01368 328 ATNAISAVQSIKALD------NIYWLAGGIP-----KEGGIEEIKPYFS--KIKKAYFYGQAKEIF 380 (454)
T ss_pred CCCHHHHHHHHHhcC------CeEEEecccC-----CCCCHHHHHHHHH--hhcEEEEECcCHHHH
Confidence 999999999999983 4889999852 2223455666654 367888889776543
No 28
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.8e-44 Score=370.08 Aligned_cols=281 Identities=25% Similarity=0.331 Sum_probs=215.5
Q ss_pred HHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhc-ccCCCcEEEEeeccCCcch
Q 013570 121 MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEMGMSGKGE 199 (440)
Q Consensus 121 la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~-~~~~~~~~VlE~g~~~~g~ 199 (440)
++.+++. .. .++|+||||||||||++||+++|+..|..+ ...|| +|+|+.... ...+.+++|+|+|+++.+.
T Consensus 99 ~~~~~~~-~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~-~~~g~----ig~~~~~~~~~~~~~~~~v~E~~~~~~~~ 171 (450)
T PRK14106 99 VELAYRF-SK-APIVAITGTNGKTTTTTLLGEIFKNAGRKT-LVAGN----IGYPLIDAVEEYGEDDIIVAEVSSFQLET 171 (450)
T ss_pred HHHHHhh-cC-CCEEEEeCCCchHHHHHHHHHHHHHcCCCe-EEeCc----ccHHHHHHHhcCCCCCEEEEEcChhhhcc
Confidence 3444443 33 689999999999999999999998777654 45666 788876432 2346899999999765432
Q ss_pred HHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCC--c
Q 013570 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG--C 277 (440)
Q Consensus 200 ~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~--a 277 (440)
...++|+++|||||++||+++|||+|+|+++|+++++..++.+.+++|.||+....+....+.++++||.+.. .
T Consensus 172 ----~~~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (450)
T PRK14106 172 ----IKEFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNYDDPRTRSLAKKAKARVIFFSRKSLLEE 247 (450)
T ss_pred ----ccccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHhhcCceEEEEecCccCcC
Confidence 2468999999999999999999999999999999999888889999999999877766332367889986531 1
Q ss_pred ceEEEeceEEEcCCeEEEEEeecC-eEE-EEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee
Q 013570 278 DVRLVAAQVANGGLGVQVVLEKER-EMV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS 355 (440)
Q Consensus 278 d~~~~~~~i~~~~~~~~f~~~~~~-~~~-~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~ 355 (440)
+++.. .....+...+.. ... .+++|++|.||++|+++|++++..+|++++++.++|++|++++||||.+..
T Consensus 248 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~~~lgi~~~~i~~~L~~~~~~~gR~e~i~~ 320 (450)
T PRK14106 248 GVFVK-------NGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAAYLLGISPDVIANTLKTFKGVEHRIEFVAE 320 (450)
T ss_pred ceEEE-------CCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEee
Confidence 11111 122223322110 000 236899999999999999999999999999999999999999999999875
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 356 RSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 356 ~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.++..+|+|+|||||+|++++++.++ +++++|+|.|.. + +.++++.+.+... +|.|+++|+...
T Consensus 321 ~~~~~vi~D~~ahNP~s~~~~l~~l~-----~~~i~v~g~~~~----~-k~~~~~~~~l~~~-~~~vi~~g~~~~ 384 (450)
T PRK14106 321 INGVKFINDSKGTNPDAAIKALEAYE-----TPIVLIAGGYDK----G-SDFDEFAKAFKEK-VKKLILLGETAQ 384 (450)
T ss_pred ECCEEEEeCCCccCHHHHHHHHHhCC-----CCeEEEeCCcCC----C-CCHHHHHHHHHhh-CCEEEEEcCCHH
Confidence 46788999989999999999999883 368889987632 2 2456666667654 799999998654
No 29
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8.7e-44 Score=368.95 Aligned_cols=311 Identities=26% Similarity=0.322 Sum_probs=229.0
Q ss_pred CCeEEEeccccCCCC-ceEEEEcCCCCccHHHH----HHHHHHHhhcC---CCCCcEEEEeCCCChHHHHHHHHHHHHhC
Q 013570 86 GCVGVIGNQVCNNWD-KGFVQVEGNGNVNTLNS----LVNMACYARNS---RFSGVLVGVTGSVGKSTTKSMIALALESL 157 (440)
Q Consensus 86 Ga~~vv~~~~~~~~~-~~~i~V~~~~~~d~~~a----l~~la~~~~~p---~~~~~vI~VTGTnGKTTT~~ml~~iL~~~ 157 (440)
++..||.++.++... -|...|. +++++ +.++..+++.- ..+.++||||||||||||++||+++|+..
T Consensus 65 ~~d~vv~sp~i~~~~~~~~~~v~-----~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 65 GFAALVLSPGVPLTHPKPHWVVD-----LARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred CCCEEEECCCCCccCCcccHHHH-----HHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 567788777654211 1233456 66666 55555433320 23568999999999999999999999888
Q ss_pred CCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHH
Q 013570 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGE 237 (440)
Q Consensus 158 g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~ 237 (440)
|.++ .+.|| +|.|++.+....+.+++|+|+|+++ + +.++.++|+++|||||++||+++|||+|+|+++|++
T Consensus 140 g~~~-~~~gn----ig~~~~~~~~~~~~~~~V~E~~~~~---l-d~t~~i~P~iaVITNI~~DHld~lgsle~ia~~K~~ 210 (460)
T PRK01390 140 GRDV-QMGGN----IGTAVLTLEPPPAGRVYVLELSSYQ---I-DLAPSLDPDVGVLLNLTPDHLDRHGTMEGYAAAKER 210 (460)
T ss_pred CCCe-EEcCc----cchhhhhcccCCCCCEEEEEcCccc---c-ccccccCCCEEEEecCChhHhcccCCHHHHHHHHHH
Confidence 8776 35565 7888777665567899999999654 2 455678999999999999999999999999999999
Q ss_pred hcccCCCCcEEEEeCCcHHHHhhcCC---CCCcEEEEeccCC--cceEEEeceEEEcCCeEEEEEeecCe--EEEE--Ee
Q 013570 238 IFQESKLGDVCVLNADDPLVANLTVP---RGVRKVFFGWRRG--CDVRLVAAQVANGGLGVQVVLEKERE--MVKF--VI 308 (440)
Q Consensus 238 i~~~~~~~~~~Vln~dd~~~~~~~~~---~~~~vi~~g~~~~--ad~~~~~~~i~~~~~~~~f~~~~~~~--~~~~--~l 308 (440)
|++..++ +.+|+|.||+....+... .+.++++|+.+.. .+++..+ +..|.+..... ...+ .+
T Consensus 211 ii~~~~~-~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 281 (460)
T PRK01390 211 LFAGQGP-DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYADG--------GKLVDARGGRQVEIADLRGIP 281 (460)
T ss_pred HHhcCCC-CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEeC--------CEEEEecCCCcceeeeHHhhc
Confidence 9998766 899999999987766511 2356788886532 2222211 22232221100 0011 15
Q ss_pred CcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCc
Q 013570 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK 388 (440)
Q Consensus 309 ~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r 388 (440)
+++|.||++|+++|++++..+|++++.|.++|++|++++||||++...++..+|+|||||||+|++++|+.+ .+
T Consensus 282 ~l~G~hn~~Na~aAiaa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~~~~g~~vIdDs~ahNp~s~~~aL~~~------~~ 355 (460)
T PRK01390 282 SLPGAHNAQNAAAAYAAARALGLSPEEIAAGLASFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKALSSF------DR 355 (460)
T ss_pred cCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEeeeCCcEEEEcCCCCCHHHHHHHHHhC------CC
Confidence 799999999999999999999999999999999999999999999865678999999999999999988865 36
Q ss_pred EEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhh
Q 013570 389 RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQ 432 (440)
Q Consensus 389 ~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~ 432 (440)
+++|+|++.. +...+.+.+.+ + .++.++++|......
T Consensus 356 i~~I~G~~d~-----~~~~~~L~~~~-~-~v~~v~~~g~~~~~l 392 (460)
T PRK01390 356 IYWIAGGKPK-----EGGIESLAPFF-P-RIAKAYLIGEAAEAF 392 (460)
T ss_pred eEEEecCccC-----CCCHHHHHHHH-H-hhCEEEEECCCHHHH
Confidence 8899996332 22334455544 3 378899999877533
No 30
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.8e-43 Score=366.13 Aligned_cols=275 Identities=25% Similarity=0.340 Sum_probs=209.1
Q ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHH-hcccCCCcEEEEeeccCCcchHHhhcccc
Q 013570 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL-IGIDRAVDIAVLEMGMSGKGEILELARMA 207 (440)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l-~~~~~~~~~~VlE~g~~~~g~~~~~~~~~ 207 (440)
..+.++||||||||||||++||+++|+..|.++. +.|| +|.|+.. +....+.+++|+|+|+++. . ..+.+
T Consensus 119 ~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~-~~Gn----ig~~~~~~~~~~~~~~~~V~E~ss~~l---~-~~~~i 189 (480)
T PRK01438 119 DRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAA-AVGN----IGTPVLDAVRDPEGYDVLAVELSSFQL---H-WSPSV 189 (480)
T ss_pred cCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeE-EECC----ccHHHHHHHhcCCCCCEEEEEcChHHh---C-cCccc
Confidence 4457899999999999999999999988887764 5676 7888753 4445678999999986543 2 23467
Q ss_pred CCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCC----CCCcEEEEeccC--CcceEE
Q 013570 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP----RGVRKVFFGWRR--GCDVRL 281 (440)
Q Consensus 208 ~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~----~~~~vi~~g~~~--~ad~~~ 281 (440)
+|+++|||||++||+++|||+|+|+++|++|++.. .+.+|+|.||+....+... .+.++++|+.+. .+++.+
T Consensus 190 ~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~~--~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (480)
T PRK01438 190 SPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEGT--TVACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGV 267 (480)
T ss_pred CCCEEEEecCChhhccccCCHHHHHHHHHHHHhCC--CceEEEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceE
Confidence 99999999999999999999999999999999852 4789999999988776521 235778888642 233332
Q ss_pred EeceEEEcCCeEEEEEeecC---eEE-EEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecC
Q 013570 282 VAAQVANGGLGVQVVLEKER---EMV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357 (440)
Q Consensus 282 ~~~~i~~~~~~~~f~~~~~~---~~~-~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~ 357 (440)
.+. +... ..|.....+ ... ..+++++|.||++|+++|++++..+|++.+.|+++|++|++++||||++...+
T Consensus 268 ~~~-~~~~---~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~~~~ 343 (480)
T PRK01438 268 VDG-ILVD---RAFVEDRQTSALELATLEDLRPAAPHNIANALAAAALARSFGVPPAAVRDGLRAFRPDAHRIEHVADAD 343 (480)
T ss_pred ECC-EEEE---EeeccccccccceeeeHHHcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEEC
Confidence 210 1100 011111100 000 12579999999999999999999999999999999999999999999998656
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 358 ~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
++.+|||||||||+|++++|+.+ +++++|+|+|....+ ...|.+.+.+. ++.++++|....
T Consensus 344 ~~~iiDDs~ahNp~a~~aaL~~l------~~i~~I~gG~~~~kd-----~~~~~~~l~~~-~~~vi~~g~~~~ 404 (480)
T PRK01438 344 GVTWVDDSKATNPHAAAASLAAY------PSVVWIAGGLAKGAD-----FDDLVRRAAGR-LRGVVLIGADRA 404 (480)
T ss_pred CEEEEecCccCCHHHHHHHHHhC------CCEEEEEecccCCCC-----HHHHHHHHHhh-ceEEEEECCCHH
Confidence 78899999999999999999888 268899986655332 34455666555 799999998754
No 31
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.5e-43 Score=361.89 Aligned_cols=271 Identities=28% Similarity=0.332 Sum_probs=212.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHh-cccCCCcEEEEeeccCCcchHHhhccccCCc
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI-GIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~-~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~ 210 (440)
.++|+||||||||||++||+++|+..|..+ ...|| +|.|.+.+ ....+.+++|+|+++.+. . ....++|+
T Consensus 108 ~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~-~~~Gn----ig~p~~~~~~~~~~~~~~V~E~ss~~~---~-~~~~~~P~ 178 (447)
T PRK02472 108 APIIGITGSNGKTTTTTLIGEMLKAGGQHA-LLAGN----IGYPASEVAQKATADDTLVMELSSFQL---M-GIETFRPH 178 (447)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHCCCCe-EEEcc----cChhhHHHHhcCCCCCEEEEEcCchhh---C-cccccCCC
Confidence 579999999999999999999998888665 46676 67787643 334467999999975432 2 24567999
Q ss_pred EEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCC--cceEEEeceEEE
Q 013570 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG--CDVRLVAAQVAN 288 (440)
Q Consensus 211 vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~--ad~~~~~~~i~~ 288 (440)
++|||||++||+++|||+|+|+++|++|++..++.+.+|+|.||+....+......++++|+.+.+ .+++..+
T Consensus 179 iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 253 (447)
T PRK02472 179 IAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINFDQEEVKELAKQTKATVVPFSTTEKVEDGAYIKD----- 253 (447)
T ss_pred EEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHhhcCceEEEeecCCCCcCceEEEC-----
Confidence 999999999999999999999999999999888889999999999887665322257888986532 1122111
Q ss_pred cCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCC
Q 013570 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368 (440)
Q Consensus 289 ~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyah 368 (440)
+ .+.+.+......++++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++.+|+|+|||
T Consensus 254 ---~-~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~g~~vi~D~~a~ 329 (447)
T PRK02472 254 ---G-ALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLLGVSNEAIREVLSTFSGVKHRLQYVGTIDGRKFYNDSKAT 329 (447)
T ss_pred ---C-EEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcceEEEEECCeEEEECCCCC
Confidence 1 122221101112368999999999999999999999999999999999999999999998754688999998899
Q ss_pred CHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhh
Q 013570 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQ 432 (440)
Q Consensus 369 np~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~ 432 (440)
||+|+.++|+.+ .+++++|+|. .+. .+.|.++++.+.. +|.|+++|+.....
T Consensus 330 N~~s~~~al~~~-----~~~ii~I~g~-~~~----~~~~~~l~~~l~~--~~~v~~~G~~~~~l 381 (447)
T PRK02472 330 NILATQKALSGF-----NQPVVLLAGG-LDR----GNEFDELVPYLKN--VKAMVVFGETAEKL 381 (447)
T ss_pred CHHHHHHHHHhC-----CCCEEEEECC-CCC----CCCHHHHHHHHhc--cCEEEEECCCHHHH
Confidence 999999988875 2578999985 222 2467888888864 79999999887543
No 32
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1e-43 Score=363.88 Aligned_cols=288 Identities=20% Similarity=0.253 Sum_probs=223.0
Q ss_pred CCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCCCCceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCC
Q 013570 61 NQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140 (440)
Q Consensus 61 g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGT 140 (440)
-++||+.+|.+ ++|.|+++|.+ +|+. +|. |+..++..+. ++ +.++||||||
T Consensus 60 ~dlvV~s~gi~-~~~~~l~~A~~-~g~~----------------vv~-----~~~~~~~~~~-~~-----~~~~I~ITGT 110 (418)
T PRK00683 60 VDLVVRSPGIK-KEHPWVQAAIA-SHIP----------------VVT-----DIQLAFQTPE-FT-----RYPSLGITGS 110 (418)
T ss_pred CCEEEECCCCC-CCcHHHHHHHH-CCCc----------------EEE-----HHHHHHhhhh-cC-----CCCEEEEECC
Confidence 58999999998 88999999999 8842 467 7776665542 22 2578999999
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChh
Q 013570 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220 (440)
Q Consensus 141 nGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~d 220 (440)
||||||++||+++|+..|. +..+.|| +|+|+ +....+.+++|+|+|+++.++... ....|+++|||||++|
T Consensus 111 ~GKTTTt~ml~~iL~~~g~-~~~~~Gn----iG~p~--l~~~~~~~~~V~E~~s~~~~~~~~--~~~~~~iavitNi~~d 181 (418)
T PRK00683 111 TGKTTTILFLEHLLKRLGI-PAFAMGN----IGIPI--LDGMQQPGVRVVEISSFQLADQEK--SYPVLSGGMILNISDN 181 (418)
T ss_pred CChHHHHHHHHHHHHHcCC-CeEEECC----cCHHH--HHHhhcCCEEEEEechhhhCcCcc--cCCCccEEEEecCChh
Confidence 9999999999999988876 4567888 88886 344446899999999876643332 2345599999999999
Q ss_pred hhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceE--EEeceEEEcCCeEEEEEe
Q 013570 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR--LVAAQVANGGLGVQVVLE 298 (440)
Q Consensus 221 Hl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~--~~~~~i~~~~~~~~f~~~ 298 (440)
|+|+|+|+|+|+++|.+|+..+. |.|+.... ...+||.+ +. ... + +.+.
T Consensus 182 Hld~~~s~e~y~~aK~~i~~~~~-------~~~~~~~~--------~~~~~~~~----~~~~~~~--~--------~~~~ 232 (418)
T PRK00683 182 HLDYHGNLSAYFQAKQNIAKCLR-------NPDDLWVG--------DERSYGHS----YLEYVQE--I--------MRLL 232 (418)
T ss_pred HhccCCCHHHHHHHHHHHHHhhh-------Cccccccc--------ccCCcCce----eecCcch--h--------hhhh
Confidence 99999999999999999997543 22322110 11233321 10 000 1 0000
Q ss_pred ecCeEEEEEeCcCcHHHHHHHHHHHHHHHH-cCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHH
Q 013570 299 KEREMVKFVIPSPGLHLAINACAAAAVATL-FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377 (440)
Q Consensus 299 ~~~~~~~~~l~l~G~~nv~NalaAia~~~~-lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al 377 (440)
.. ...++++|.||++|+++|++++.. +|++.++|+++|++|++++||||++...++..+|+|+||+||+|++++|
T Consensus 233 ~~----~~~~~~~g~hn~~Na~aA~a~~~~l~g~~~~~i~~~l~~~~~~~~R~e~v~~~~g~~~i~Ds~~t~~~s~~~al 308 (418)
T PRK00683 233 DK----GSALKPLYLHDRYNYCAAYALANEVFPISEESFLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSAVEKAL 308 (418)
T ss_pred cc----ccccCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCceEEEeecCCeEEEEcCCCCCHHHHHHHH
Confidence 01 124578999999999999999999 6999999999999999999999999865789999999999999999999
Q ss_pred HHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 378 ~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
+.+ .+|+++|+|+|.+.|+.+ ++++.+.+. +|.|+++|+...
T Consensus 309 ~~~-----~~~~i~vlG~~~~~~d~~-----~l~~~~~~~-~~~v~~~G~~~~ 350 (418)
T PRK00683 309 LAV-----GNQVIVILGGRNKGCDFS-----SLLPVLRQT-AKHVVAMGECRQ 350 (418)
T ss_pred HhC-----CCCEEEEEcCCCCCCCHH-----HHHHHHHHh-CCEEEEECCCHH
Confidence 864 257999999999987664 688888776 899999998764
No 33
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.6e-42 Score=355.63 Aligned_cols=270 Identities=27% Similarity=0.352 Sum_probs=209.3
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhH-HhcccCCCcEEEEeeccCCcchHHhhccccCCc
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS-LIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~-l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~ 210 (440)
.++||||||||||||++||+++|+..|.++ ...|| +|.|+. ......+.+++|+|+|+++.+.+... .++|+
T Consensus 115 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~-~~~Gn----iG~p~~~~~~~~~~~~~~VlE~ss~q~~~~~~~--~~~P~ 187 (468)
T PRK04690 115 PGTVCVTGTKGKSTTTALLAHLLRAAGHRT-ALVGN----IGVPLLEVLAPQPAPEYWAIELSSYQTGDVARS--GARPE 187 (468)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHhcCCcE-EEcCC----CCcchHHHhccCCCCcEEEEEecCCcccccccc--cCCCC
Confidence 479999999999999999999998888655 46777 677763 44444567999999998776555432 37999
Q ss_pred EEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEcC
Q 013570 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (440)
Q Consensus 211 vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~ 290 (440)
++|||||++||+++|+|+|+|.++|++|++..++ +.+|+|.||+....+.. ...++++|+.... +....
T Consensus 188 iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~-~~~v~n~dd~~~~~~~~-~~~~v~~~~~~~~--~~~~~------- 256 (468)
T PRK04690 188 LAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP-RIALLNAADPRLAALQL-PDSEVVWFNHPDG--WHVRG------- 256 (468)
T ss_pred EEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-CeEEEeCccHHHHHHhc-CCCeEEEeeCCcc--ceecc-------
Confidence 9999999999999999999999999999987544 68899999998766542 1257888886421 11110
Q ss_pred CeEEEEEeec-CeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCC
Q 013570 291 LGVQVVLEKE-REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (440)
Q Consensus 291 ~~~~f~~~~~-~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahn 369 (440)
. +.+... .....+.++++|.||++|+++|++++..+|++++.|.++|++|+++|||||++...+++.+||||||||
T Consensus 257 -~--~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~g~~iidDs~ahN 333 (468)
T PRK04690 257 -D--VVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEALGLDAVALAPAAAGFRPLPNRLQELGSRDGITYVNDSISTT 333 (468)
T ss_pred -e--EEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCcEEEEccCCeEEEEeCCCCC
Confidence 0 111111 011145788999999999999999999999999999999999998999999998656889999988999
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhh
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVV 431 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~ 431 (440)
|+|++++|+.+. .+++++|+|.+.. ++..+.|.+.+.+...+.++++|...+.
T Consensus 334 p~a~~~al~~~~----~~~i~~i~Gg~~k-----~kd~~~l~~~l~~~~~~~v~~~g~~~~r 386 (468)
T PRK04690 334 PHASLAALDCFA----GRRVALLVGGHDR-----GLDWTDFAAHMAQRAPLEIVTMGANGPR 386 (468)
T ss_pred HHHHHHHHHhcc----CCcEEEEEcCCCC-----CCCHHHHHHHHHhccCeEEEEeCCCHHH
Confidence 999999987752 3578899987432 2234677777766424788998987653
No 34
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=8.4e-43 Score=383.02 Aligned_cols=306 Identities=25% Similarity=0.261 Sum_probs=231.9
Q ss_pred cHHHHHHHHHH-Hh-hcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeE--EecCcCCCCcc-------hhhHH--h
Q 013570 113 NTLNSLVNMAC-YA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGNWNNRVG-------VALSL--I 179 (440)
Q Consensus 113 d~~~al~~la~-~~-~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~--~t~g~~n~~~g-------~p~~l--~ 179 (440)
..+.++..+.. ++ ..|+.++|+|+||||||||||++||+++|+..|++++ .|.|.+++... .|.+. +
T Consensus 458 ~~r~v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~ 537 (864)
T TIGR02068 458 KPRNVARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRI 537 (864)
T ss_pred CCeeHHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHH
Confidence 35566677776 55 5567889999999999999999999999999999884 34454433221 13222 2
Q ss_pred cccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccC--CCHHHHHHHHHHhcccCCCCcEEEEeCCcHHH
Q 013570 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL--GSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257 (440)
Q Consensus 180 ~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~--gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~ 257 (440)
..+.++|++|+|+++++ .++....+.+|+++|||||+.||++++ +|+|+|+++|+.+++.+++++.+|+|.||+.+
T Consensus 538 l~~~~vd~aVlE~~~gg--il~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~ 615 (864)
T TIGR02068 538 LMDPTVDAAVLETARGG--ILREGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMV 615 (864)
T ss_pred hhCCCCCEEEEEccCCc--hhhccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHH
Confidence 35678999999997543 233334456899999999999999864 69999999999999988899999999999998
Q ss_pred HhhcCCCCCcEEEEeccCCcceEEEe----c-eEEEcCCeEEEEEeecC-----eEEEEEeCcCc--HHHHHHHHHHHHH
Q 013570 258 ANLTVPRGVRKVFFGWRRGCDVRLVA----A-QVANGGLGVQVVLEKER-----EMVKFVIPSPG--LHLAINACAAAAV 325 (440)
Q Consensus 258 ~~~~~~~~~~vi~~g~~~~ad~~~~~----~-~i~~~~~~~~f~~~~~~-----~~~~~~l~l~G--~~nv~NalaAia~ 325 (440)
..++.....++++|+.+.+.++.... + .+.+. ++..+...+.. ....+.+++.| .||++|+++|+++
T Consensus 616 ~~~a~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAiaa 694 (864)
T TIGR02068 616 AAMAEKCKGKIAYFSMDPNNPTVAAHIADGGRAVYYE-NGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAVAA 694 (864)
T ss_pred HHHHHhCCCCEEEEecCCCChHHHHHHHcCCcEEEEc-CCEEEEEecCccccccceeeeccccCCcccchHHHHHHHHHH
Confidence 87763223678999875432211110 0 01111 12222222110 01134444445 9999999999999
Q ss_pred HHHcCCCHHHHHHHhcCCCC----CCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCCh
Q 013570 326 ATLFGVSLAQVGISLSNFSP----VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS 401 (440)
Q Consensus 326 ~~~lg~~~~~i~~~L~~~~~----~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~ 401 (440)
++.+|++++.|.++|++|.+ .|||||+++. +++.+|+| |||||+|+++++++++.+. .+|+++|+|+ .|+
T Consensus 695 a~~lgi~~e~I~~gL~~F~~~~~~~pGR~e~~~~-~g~~vI~D-yAHNP~a~~all~~l~~~~-~~r~i~Vig~---~gd 768 (864)
T TIGR02068 695 AWALGVPIELIRAGIRTFDADAAQAPGRFNLFNL-GGAHVLVD-YGHNPAAIEAVGAAIRNWP-ARRRIGVIGG---PGD 768 (864)
T ss_pred HHHcCCCHHHHHHHHHhccccccCCCCceEEEEe-CCcEEEEE-cCCCHHHHHHHHHHHHhcC-CCCEEEEECC---CCC
Confidence 99999999999999999987 8999999975 67899999 9999999999999999875 5789999999 588
Q ss_pred hcHHHHHHHHHHHHHcCCCEEEEEcCc
Q 013570 402 TERESHEKILSYCCDACIDLIGLVGDR 428 (440)
Q Consensus 402 ~~~~~~~~l~~~~~~~~~d~vi~~G~~ 428 (440)
++.+.+.++++.+.+. +|.|+++.+.
T Consensus 769 r~~~~~~~lg~~l~~~-~d~vil~~~~ 794 (864)
T TIGR02068 769 RRDEDLVEQGELLGGA-FDQIILKEDD 794 (864)
T ss_pred CChhHHHHHHHHHHHh-CCEEEEEeCC
Confidence 9999999999999876 8999998664
No 35
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=2e-42 Score=352.15 Aligned_cols=281 Identities=23% Similarity=0.276 Sum_probs=205.8
Q ss_pred HHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeE--EecC--cCCCCc---ch------------------
Q 013570 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYG--NWNNRV---GV------------------ 174 (440)
Q Consensus 120 ~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~--~t~g--~~n~~~---g~------------------ 174 (440)
++...+.+|+.++++|+||||||||||+.||+++|++.|++|+ +|++ ++|.++ |.
T Consensus 6 ~~l~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~ 85 (397)
T TIGR01499 6 KLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPIL 85 (397)
T ss_pred HHHHHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHH
Confidence 3334444667778999999999999999999999999999984 3443 233333 11
Q ss_pred -----hhHHh----------cccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCC-CHHHHHHHHHHh
Q 013570 175 -----ALSLI----------GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAKGEI 238 (440)
Q Consensus 175 -----p~~l~----------~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~g-s~e~~~~~K~~i 238 (440)
+++.+ ..+.++|++|||+|+++..+ .+++++|+++|||||++||+++|| |+|+|+++|++|
T Consensus 86 ~~~~~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld---~tn~i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I 162 (397)
T TIGR01499 86 EKLSQQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLD---ATNVIEPLVSVITSIGLDHTEILGDTLEEIAWEKAGI 162 (397)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCcc---cccccCCCeEEEccccHHHHHHhCccHHHHHHHHhCc
Confidence 11111 12579999999999876543 567889999999999999999999 899999999999
Q ss_pred cccCCCCcEEEEeCCcHHHHhhc----CCCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeec-CeEEEEEeCcCcH
Q 013570 239 FQESKLGDVCVLNADDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGL 313 (440)
Q Consensus 239 ~~~~~~~~~~Vln~dd~~~~~~~----~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~-~~~~~~~l~l~G~ 313 (440)
|+ +++.+|+|.||+....+. ...+.++++++. ++.... . .+..|.+... +....+.++++|.
T Consensus 163 ~k---~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~--~----~~~~~~~~~~~~~~~~~~~~l~G~ 229 (397)
T TIGR01499 163 IK---EGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGR----DFNYSE--T----DENYLSFSGANLFLEPLALSLLGD 229 (397)
T ss_pred cC---CCCCEEEcCCChHHHHHHHHHHHHcCCCEEEecc----ceeecc--c----ccceEEeecccccccccCCCCCCH
Confidence 96 467899999998765543 111245667763 222211 1 1233444432 1112467899999
Q ss_pred HHHHHHHHHHHHHHHcCC-----CHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCc
Q 013570 314 HLAINACAAAAVATLFGV-----SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK 388 (440)
Q Consensus 314 ~nv~NalaAia~~~~lg~-----~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r 388 (440)
||++|+++|++++..+|. +++.|.++|+++. +|||||++.. ++..+|+| +||||+|+++++++++...+.++
T Consensus 230 ~~~~N~~~Aiaa~~~lg~~~~~i~~~~i~~~L~~~~-~pGR~e~i~~-~~~~viiD-~AHNp~a~~~~l~~l~~~~~~~~ 306 (397)
T TIGR01499 230 HQAENAALALAALEVLGKQRPKLSEEAIRKGLANTI-WPGRLEILSE-DNPNILLD-GAHNPHSAEALAEWFKKRFNGRP 306 (397)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhCC-CCceEEEEec-CCCEEEEE-CCCCHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999986 5899999999997 6999999975 46788899 89999999999999987553456
Q ss_pred EEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCE-EEEEc
Q 013570 389 RVVILGDMLELGSTERESHEKILSYCCDACIDL-IGLVG 426 (440)
Q Consensus 389 ~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~-vi~~G 426 (440)
+++|||+ .|+++.+ ++.+.+.+. .+. ++++.
T Consensus 307 i~~V~G~---~~dkd~~---~~~~~l~~~-~~~d~~~~~ 338 (397)
T TIGR01499 307 IILLFGA---LADKDAA---AMLAPLKPV-VDKEVFVTP 338 (397)
T ss_pred eEEEEEe---eCCCCHH---HHHHHHhhc-cCcEEEEEC
Confidence 8899999 5666544 344444443 343 55554
No 36
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=1.1e-40 Score=366.69 Aligned_cols=274 Identities=22% Similarity=0.275 Sum_probs=208.6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCe-EEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCc
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~-~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~ 210 (440)
.++||||||||||||++||+++|++.|.++ ... |+.+ |.|. .....+.+++|+|+|++. +.+. .++|+
T Consensus 104 ~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~-gG~~---g~~~--~~~~~~~d~~V~E~ss~~-~~~~----~~~P~ 172 (809)
T PRK14573 104 QISILVSGSHGKTTVSSLITAIFQEAKKDPSYAI-GGLN---QEGL--NGYSGSSEYFVAEADESD-GSLK----HYTPE 172 (809)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEE-CCcc---cccc--ccccCCCCEEEEECCCCc-chhh----eeecC
Confidence 379999999999999999999999888763 333 4422 2232 233345799999999764 4433 57999
Q ss_pred EEEEcCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEc
Q 013570 211 IRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289 (440)
Q Consensus 211 vaviTNi~~dHl~~~-gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~ 289 (440)
++|||||++||||+| +|+|+|+++|..++..+++.+.+|+|.||+...... +..+||....++++..+ +...
T Consensus 173 iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~--~~~~ 245 (809)
T PRK14573 173 FSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCFYNGDCPRLKGCL-----QGHSYGFSSSCDLHILS--YYQE 245 (809)
T ss_pred EEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhc-----ccEEEccCCCCcEEEEE--EEec
Confidence 999999999999988 899999999999998877889999999999765432 23567765445665544 4444
Q ss_pred CCeEEEEEeecC-eEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCC
Q 013570 290 GLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368 (440)
Q Consensus 290 ~~~~~f~~~~~~-~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyah 368 (440)
.....|.+...+ ....++++++|.||++|+++|++++..+|++.+.|.++|++|++++||||++...+++.+|+| |||
T Consensus 246 ~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~~~~~i~D-~ah 324 (809)
T PRK14573 246 GWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALTLGIDEGAIRNALKGFSGVQRRLERKNSSETFLFLED-YAH 324 (809)
T ss_pred CCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCCEEEeccCCcEEEEE-CCC
Confidence 444556664322 223678999999999999999999999999999999999999999999999986567889999 999
Q ss_pred CHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCc
Q 013570 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428 (440)
Q Consensus 369 np~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~ 428 (440)
||+|++++++++++..+.+|+++||++-.. .+-.....++...+.. .|.++++...
T Consensus 325 nP~~~~a~l~~l~~~~~~~rli~vf~~~~~--~~~~~~~~~~~~~l~~--~d~vilt~~~ 380 (809)
T PRK14573 325 HPSEISCTLRAVRDAVGLRRIIAICQPHRF--SRLRECLDSFPSAFQD--ADEVILTDVY 380 (809)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEEEEcCCcc--hhHHHHHHHHHHHHHH--CCEEEECCcc
Confidence 999999999999886535678899965111 1112233344444433 7999987543
No 37
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=1.8e-39 Score=337.92 Aligned_cols=296 Identities=23% Similarity=0.253 Sum_probs=207.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecC----cCCCCc-----ch---------
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG----NWNNRV-----GV--------- 174 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g----~~n~~~-----g~--------- 174 (440)
.+++.|..|+ +|+.++++|+|||||||+||+.||+++|+++|++|+.... .+|.++ |.
T Consensus 60 r~~~ll~~LG----~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~ 135 (510)
T PLN02913 60 RMRRLMDRLG----NPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLND 135 (510)
T ss_pred HHHHHHHHcC----CchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHH
Confidence 3444444444 5666789999999999999999999999999999964321 122221 10
Q ss_pred ------------------hhHHhc----------ccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCC
Q 013570 175 ------------------ALSLIG----------IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226 (440)
Q Consensus 175 ------------------p~~l~~----------~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~g 226 (440)
++|.|+ .+.++|++|+|+|+++.++...+....+|+++|||||+.||++++|
T Consensus 136 ~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG 215 (510)
T PLN02913 136 LFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALG 215 (510)
T ss_pred HHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhc
Confidence 122221 1578999999999999876665544345699999999999999998
Q ss_pred -CHHHHHHHHHHhcccCCCCcEEEEeC-CcHHHHhhc----CCCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEee-
Q 013570 227 -SLEDVARAKGEIFQESKLGDVCVLNA-DDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK- 299 (440)
Q Consensus 227 -s~e~~~~~K~~i~~~~~~~~~~Vln~-dd~~~~~~~----~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~- 299 (440)
|+|+|+++|++|++ ++..+|++. ..+....+. ...+++++.++. .+.++.... +.. ..+..|.+..
T Consensus 216 ~Tle~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~-~~~~~~~~~--~~~-~~~~~~~~~~~ 288 (510)
T PLN02913 216 GSLESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASD-PGVRSSIKG--IIT-DNGKPCQSCDI 288 (510)
T ss_pred ccHHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEecc-ccccceeec--ccc-cCCceeEEecc
Confidence 79999999999996 577888875 334333322 222356666642 111222211 110 1122233211
Q ss_pred ----cC------eEEEEEeCcCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhcCCCCCCCceeEEeec-------C
Q 013570 300 ----ER------EMVKFVIPSPGLHLAINACAAAAVATLF-----GVSLAQVGISLSNFSPVQMRSELLVSR-------S 357 (440)
Q Consensus 300 ----~~------~~~~~~l~l~G~~nv~NalaAia~~~~l-----g~~~~~i~~~L~~~~~~~gR~e~~~~~-------~ 357 (440)
.+ ....+.++++|.||++|+++|++++..+ +++.+.|.++|+++.+ |||||++... .
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~~~~i~~~~I~~gL~~~~~-pGR~E~i~~~~~~~~~~~ 367 (510)
T PLN02913 289 VIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRISDASIRAGLENTNL-LGRSQFLTSKEAEVLGLP 367 (510)
T ss_pred ccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCC-CCceEEeeccccccccCC
Confidence 00 1114778999999999999999999988 6999999999999996 6999998631 2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHH-cCCCEEEEEcC
Q 013570 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCD-ACIDLIGLVGD 427 (440)
Q Consensus 358 ~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~-~~~d~vi~~G~ 427 (440)
+..||+| +||||+|++++++++++..+.+|+++|+|.+ + ++.|.+|++.+.. ..+|.++++..
T Consensus 368 ~~~vIlD-gAHNp~s~~al~~~L~~~~~~~ki~~V~gml---~---DKd~~~~l~~l~~~~~~d~v~~~~~ 431 (510)
T PLN02913 368 GATVLLD-GAHTKESAKALVDTIKTAFPEARLALVVAMA---S---DKDHLAFASEFLSGLKPEAVFLTEA 431 (510)
T ss_pred CCEEEEE-CCCCHHHHHHHHHHHHHhcCCCCEEEEEEcc---C---CCCHHHHHHHHhcccCCCEEEEEcC
Confidence 4589999 7899999999999998733245677777773 3 4568889986644 23799998854
No 38
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8.6e-39 Score=324.04 Aligned_cols=248 Identities=24% Similarity=0.281 Sum_probs=192.8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcE
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~v 211 (440)
.++||||||||||||++||+++|+..|..+ .|| +|.|++. +..+.+++|+|+|+.+ ..+.+.++|++
T Consensus 89 ~~~i~ITGT~GKTTTt~ml~~iL~~~g~~~---~gn----iG~p~~~--~~~~~~~~V~E~ss~~----~~~~~~~~p~i 155 (401)
T PRK03815 89 PFSIWISGTNGKTTTTQMTTHLLEDFGAVS---GGN----IGTPLAE--LDKNAKIWVLETSSFT----LHYTNKAKPNI 155 (401)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHCCCcE---EEE----ecHhHHh--cCCCCCEEEEECChHH----hhCCccCCCcE
Confidence 359999999999999999999998877432 345 7888776 4567799999996322 34566789999
Q ss_pred EEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEcCC
Q 013570 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291 (440)
Q Consensus 212 aviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~ 291 (440)
+|||||++||+|+|+|+|+|.++|.+|++++++++.+|+|.||+... . ..++++||... +++. . .
T Consensus 156 avitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~dd~~~~---~--~~~~~~fg~~~--~~~~-~--~----- 220 (401)
T PRK03815 156 YLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPKKFKNTP---T--KAQKIFYEDEE--DLAE-K--F----- 220 (401)
T ss_pred EEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEeccccccc---c--CCcEEEEecCC--cccc-c--e-----
Confidence 99999999999999999999999999999998899999999998632 1 14678888421 2210 1 1
Q ss_pred eEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHH
Q 013570 292 GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371 (440)
Q Consensus 292 ~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~ 371 (440)
.+... .+.+.+. +++|+++|++++..+|+ +.+.++|++|+++++|||++...+++++|||+||.||+
T Consensus 221 ----~~~~~------~~~~~~~-~~~NalaA~a~a~~~G~--~~~~~~L~~f~~~~~R~e~~~~~~gv~~idDs~~tn~~ 287 (401)
T PRK03815 221 ----GIDSE------KINFKGP-FLLDALLALAVYKILFD--ELDYERLNAFKIGKHKLEEFRDKQGRLWVDDSKATNVD 287 (401)
T ss_pred ----eEehH------hcCCchH-HHHHHHHHHHHHHHhCc--HHHHHHHHhCCCCCceEEEEEEECCEEEEECCCCCCHH
Confidence 11111 1223454 49999999999999994 55667899999999999999766889999999999999
Q ss_pred HHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 372 STRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 372 s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
|+.++|+.+ + .+|+|+|+|+ ......+.++++.+.+... .|+++|+...
T Consensus 288 a~~~al~~~---~-~~~ii~IlGG-----~~k~~~~~~l~~~~~~~~~-~v~~~G~~~~ 336 (401)
T PRK03815 288 ATLQALKRY---K-DKKIHLILGG-----DDKGVDLTPLFEFMKNLNI-ELYAIGSNTE 336 (401)
T ss_pred HHHHHHHhC---C-CCCEEEEECC-----CCCCCCHHHHHHHHHhhCc-EEEEECCCHH
Confidence 888888765 2 3577999995 3334455689999887754 5999999764
No 39
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=3.2e-38 Score=322.85 Aligned_cols=278 Identities=20% Similarity=0.248 Sum_probs=191.3
Q ss_pred HHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecC----cCCCCc-----ch---------------
Q 013570 119 VNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG----NWNNRV-----GV--------------- 174 (440)
Q Consensus 119 ~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g----~~n~~~-----g~--------------- 174 (440)
.++.....+|..+.++|+||||||||||+.||+++|++.|++|+.... +++.++ .+
T Consensus 36 ~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~ 115 (416)
T PRK10846 36 SQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFAEIEAA 115 (416)
T ss_pred HHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHHHHHHH
Confidence 333344445666789999999999999999999999999999853221 112111 01
Q ss_pred ----hhHHh----------cccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCC-CHHHHHHHHHHhc
Q 013570 175 ----ALSLI----------GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAKGEIF 239 (440)
Q Consensus 175 ----p~~l~----------~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~g-s~e~~~~~K~~i~ 239 (440)
+++.| ..++++|++|+|+|+++. .+.++.++|+++|||||++||+++|| |+|+|+++|++|+
T Consensus 116 ~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggr---ld~tn~i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Ii 192 (416)
T PRK10846 116 RGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR---LDATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIF 192 (416)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCC---chhhhccCCCEEEECCccHHHHHHhcCCHHHHHHHHHhhh
Confidence 11111 125789999999997654 33456689999999999999999999 7999999999999
Q ss_pred ccCCCCcEEEEeCCc-HH-HHhhcCCCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCeEEEEEeCcCcHHHHH
Q 013570 240 QESKLGDVCVLNADD-PL-VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAI 317 (440)
Q Consensus 240 ~~~~~~~~~Vln~dd-~~-~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~ 317 (440)
+. ++.+|+|.|| +. ....+.+.+++++.++. ++... .... .+.+...... ...++++ .||++
T Consensus 193 k~---~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~----~~~~~-----~~~~--~~~~~~~~~~-~~~~~l~-~~~~~ 256 (416)
T PRK10846 193 RA---EKPAVVGEPDMPSTIADVAQEKGALLQRRGV----DWNYS-----VTDH--DWAFSDGDGT-LENLPLP-NVPLP 256 (416)
T ss_pred cC---CCeEEECCccHhHHHHHHHHHhCCcEEEecc----eeeee-----ccCc--eEEEecCccc-cccCCcc-chHHH
Confidence 63 6778998776 43 22333222245544432 11110 0011 1222111010 1235555 47999
Q ss_pred HHHHHHHHHHH--cCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcC
Q 013570 318 NACAAAAVATL--FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395 (440)
Q Consensus 318 NalaAia~~~~--lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~ 395 (440)
|+++|++++.. ++++.+.|.++|+++. +|||||++.. +..+|+| |||||+|++++++.+++....+|+++|||.
T Consensus 257 N~~~Aia~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~~--~~~iI~D-~AHNp~a~~~l~~~L~~~~~~~~ii~Vfg~ 332 (416)
T PRK10846 257 NAATALAALRASGLEVSEQAIRDGIASAI-LPGRFQIVSE--SPRVILD-VAHNPHAAEYLTGRLKALPKNGRVLAVIGM 332 (416)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEcC--CCcEEEE-CCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999865 5699999999999999 6999999974 3468999 899999999999998875434688999998
Q ss_pred CCCCChhcHHHHHHHHHHHHHcCCCEEEEEc
Q 013570 396 MLELGSTERESHEKILSYCCDACIDLIGLVG 426 (440)
Q Consensus 396 m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G 426 (440)
+|+++.. .+...+.+. .|.++++-
T Consensus 333 ---~gdkd~~---~~l~~L~~~-~d~viv~~ 356 (416)
T PRK10846 333 ---LHDKDIA---GTLACLKSV-VDDWYCAP 356 (416)
T ss_pred ---eCCCCHH---HHHHHHhhh-CCEEEEEC
Confidence 6656443 455555544 57776654
No 40
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.4e-36 Score=301.34 Aligned_cols=284 Identities=24% Similarity=0.323 Sum_probs=213.5
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEec----CcCCCCcc-----------------
Q 013570 115 LNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY----GNWNNRVG----------------- 173 (440)
Q Consensus 115 ~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~----g~~n~~~g----------------- 173 (440)
..-+..+++...+|+.+.++|.|+|||||+||+.|+++||+++|++|+... -++|.++-
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ 106 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER 106 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 444455666667788889999999999999999999999999999985322 23454431
Q ss_pred ----------hhhHHhc----------ccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCC-HHHHH
Q 013570 174 ----------VALSLIG----------IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS-LEDVA 232 (440)
Q Consensus 174 ----------~p~~l~~----------~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs-~e~~~ 232 (440)
..+|.|+ .+.++|++|+|+|+++. .+.++++.|+++|||+|+.||.+++|+ +|+|+
T Consensus 107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGR---lDATNVi~p~vsvIT~I~lDH~~~LG~tie~IA 183 (427)
T COG0285 107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGR---LDATNVIEPDVSVITSIGLDHTAFLGDTLESIA 183 (427)
T ss_pred HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEecccccc---ccchhccCCceEEEcccChhHHHHhCCcHHHHH
Confidence 1112222 15679999999999887 556788999999999999999999986 99999
Q ss_pred HHHHHhcccCCCCcEEEEeC-CcHHHHhhc----CCCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCeEEEEE
Q 013570 233 RAKGEIFQESKLGDVCVLNA-DDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFV 307 (440)
Q Consensus 233 ~~K~~i~~~~~~~~~~Vln~-dd~~~~~~~----~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~ 307 (440)
.+|++|++ ++..+|+.. +.|...... ....+++..++.+ +...+ .+..|.+++.+....+.
T Consensus 184 ~EKAGI~k---~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~ 249 (427)
T COG0285 184 REKAGIIK---AGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD----FQVLE-------EGNGFSFQGGGGLLDLP 249 (427)
T ss_pred HHhhhhcc---CCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc----hhhcc-------ccceEEEecCCeeeeec
Confidence 99999995 456677766 456554443 1122344444322 11111 13445554322333789
Q ss_pred eCcCcHH-HHHHHHHHHHHHHHcCC--CHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccc
Q 013570 308 IPSPGLH-LAINACAAAAVATLFGV--SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (440)
Q Consensus 308 l~l~G~~-nv~NalaAia~~~~lg~--~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~ 384 (440)
+|++|.| |..|+++|++++..++. +.+.|.++|++..+ |||||++.. +..++.| .||||.|++++.+.++..+
T Consensus 250 lp~l~~~~Q~~NAa~Ai~al~~l~~~i~~~~i~~gl~~~~w-pGR~e~l~~--~p~i~lD-gAHNp~aa~~La~~l~~~~ 325 (427)
T COG0285 250 LPLLGGHHQIENAALAIAALEALGKEISEEAIRKGLANVDW-PGRLERLSE--NPLILLD-GAHNPHAARALAETLKTLF 325 (427)
T ss_pred cccccchhHHHHHHHHHHHHHHhcccCCHHHHHHHHHhCcC-CceEEEecC--CCeEEEE-CCCCHHHHHHHHHHHHHHh
Confidence 9998888 99999999999999985 89999999999997 999999986 4778889 8999999999999999887
Q ss_pred CCCc-EEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEc
Q 013570 385 CNGK-RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426 (440)
Q Consensus 385 ~~~r-~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G 426 (440)
...+ +++|||. + .++.+..+.+.+... .+.++++.
T Consensus 326 ~~~~~~~~v~g~---l---~dKd~~~~l~~L~~~-~~~~~~~~ 361 (427)
T COG0285 326 NDRPRLTLVFGM---L---KDKDIAGMLAALLPI-VDEIYTTP 361 (427)
T ss_pred ccCCceEEEEEe---e---cCCCHHHHHHHhhcc-CcEEEEcc
Confidence 5444 7899998 3 344567788888776 67777774
No 41
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=100.00 E-value=3.2e-35 Score=268.86 Aligned_cols=186 Identities=37% Similarity=0.559 Sum_probs=156.3
Q ss_pred EeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhccc-CCCcEEEEeeccCCcchHHhhccccCCcEEEEc
Q 013570 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID-RAVDIAVLEMGMSGKGEILELARMARPEIRVVL 215 (440)
Q Consensus 137 VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~-~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviT 215 (440)
||||||||||++||+++|++.|..+ .+.|+.|+.+|.+..+..+. .+++++|+|+|+++.++ .++..+++|+++|||
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~p~i~viT 78 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVV-GTIGNTNNQIGLPLLLLNAREGGADIAVLEVSEGGLGD-ERLSFLLKPDIAVIT 78 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEE-EEESSCHHHHHHHHHHHHHHHTTSSEEEEEESSSCCCT-STTSGGSBESEEEE-
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcc-cccccccchHHHHHHHhhhcccccceeeeeccCCcccc-ceeeeeeehheeeec
Confidence 8999999999999999998887644 67888888889888777654 48999999999987776 677666899999999
Q ss_pred CCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEcCCeEEE
Q 013570 216 NVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295 (440)
Q Consensus 216 Ni~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f 295 (440)
||++||+++|+++|+|+++|+++++.+++++.+|+|.|||.+.........++++||.+.+.+++... +....++..|
T Consensus 79 ni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--i~~~~~~~~~ 156 (188)
T PF08245_consen 79 NIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASN--ISYSEEGGRF 156 (188)
T ss_dssp ---SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEE--EEEETTEEEE
T ss_pred eecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeee--EEEecCCcEE
Confidence 99999999999999999999999999988999999999997766662223679999999888888877 8887788888
Q ss_pred EEe-ecCeEEEEEeCcCcHHHHHHHHHHHHHH
Q 013570 296 VLE-KEREMVKFVIPSPGLHLAINACAAAAVA 326 (440)
Q Consensus 296 ~~~-~~~~~~~~~l~l~G~~nv~NalaAia~~ 326 (440)
.+. .++...++++|++|.||++|+++|+++|
T Consensus 157 ~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 157 RIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp EEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 665 3334448999999999999999999986
No 42
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=1.4e-33 Score=289.75 Aligned_cols=279 Identities=19% Similarity=0.217 Sum_probs=199.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEE--ecC--cCCCCc----------------
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ--SYG--NWNNRV---------------- 172 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~--t~g--~~n~~~---------------- 172 (440)
.+++.|..|+.. .|..++++|+|||||||+||+.|+++||++.|++|+. ++. .++.++
T Consensus 44 rm~~~L~~LG~p--~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f 121 (530)
T PLN02881 44 LLFDYLKILELE--EAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYF 121 (530)
T ss_pred HHHHHHHHcCCC--chhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHH
Confidence 666666666632 2336789999999999999999999999999999853 221 122221
Q ss_pred ---------------chh-----hHHhcc----cCCCcEEEEeeccCCcchHHhhcccc-CCcEEEEcCCChhhhccCC-
Q 013570 173 ---------------GVA-----LSLIGI----DRAVDIAVLEMGMSGKGEILELARMA-RPEIRVVLNVGDSHLESLG- 226 (440)
Q Consensus 173 ---------------g~p-----~~l~~~----~~~~~~~VlE~g~~~~g~~~~~~~~~-~p~vaviTNi~~dHl~~~g- 226 (440)
+.| +|++.+ .+++|++|+|+|+++..+. ++++ +|+++|||||+.||+++||
T Consensus 122 ~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~Da---Tnvi~~p~v~vITnIg~DH~~~LG~ 198 (530)
T PLN02881 122 WWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDA---TNVVQKPVVCGITSLGYDHMEILGD 198 (530)
T ss_pred HHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchh---hhccCCCCEEEEccccHHHHHhhcC
Confidence 113 233322 6889999999998776543 3444 8999999999999999999
Q ss_pred CHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhc----CCCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCe
Q 013570 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302 (440)
Q Consensus 227 s~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~----~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~ 302 (440)
|+|+|+.+|++||+ ++..+|+..+.+....++ .+.++++..++. . . .+.+ .
T Consensus 199 Tle~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~------------~----~--~~~~--~-- 253 (530)
T PLN02881 199 TLGKIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEP------------L----D--SYGL--S-- 253 (530)
T ss_pred CHHHHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEecc------------c----c--ccee--c--
Confidence 79999999999995 566677766666555443 111233322211 0 0 0111 1
Q ss_pred EEEEEeCcCcHHHHHHHHHHHHHHHHc---------------CCCHHHHHHHhcCCCCCCCceeEEee-------cCCeE
Q 013570 303 MVKFVIPSPGLHLAINACAAAAVATLF---------------GVSLAQVGISLSNFSPVQMRSELLVS-------RSGIK 360 (440)
Q Consensus 303 ~~~~~l~l~G~~nv~NalaAia~~~~l---------------g~~~~~i~~~L~~~~~~~gR~e~~~~-------~~~~~ 360 (440)
.+++++.|.||..|+.+|++++..+ ...++.+.++|+++.+ |||||++.. .++..
T Consensus 254 --~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~w-pGR~e~v~~~~~~~~~~~~~~ 330 (530)
T PLN02881 254 --GLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASL-QGRAQVVPDSYINSEDSGDLV 330 (530)
T ss_pred --ccCCCCCChhHHHhHHHHHHHHHHHHhhccccccccccccCCCHHHHHHHHHhCCC-CceEEEeccccccccCCCCCe
Confidence 3568899999999999999998765 2345689999999996 999999963 13568
Q ss_pred EEEecCCCCHHHHHHHHHHHhcccC--------------------------CCcEEEEEcCCCCCChhc-HHHHHHHHHH
Q 013570 361 IVNDAYNANPISTRAAIDLLKDIAC--------------------------NGKRVVILGDMLELGSTE-RESHEKILSY 413 (440)
Q Consensus 361 ii~Dsyahnp~s~~~al~~l~~~~~--------------------------~~r~i~VlG~m~e~G~~~-~~~~~~l~~~ 413 (440)
+|.| .||||+|++++.++++.... ..++++|||+| ++++ ...-+.+.+.
T Consensus 331 ~~LD-GAHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~---~dkD~~~lL~~L~~~ 406 (530)
T PLN02881 331 FYLD-GAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCM---SVRDPQLLLPPLANT 406 (530)
T ss_pred EEEE-CCCCHHHHHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCC---CCCCHHHHHHHHHHH
Confidence 9999 99999999999999865221 23689999995 4443 3444556565
Q ss_pred HHH--cCCCEEEEEcCc
Q 013570 414 CCD--ACIDLIGLVGDR 428 (440)
Q Consensus 414 ~~~--~~~d~vi~~G~~ 428 (440)
+.+ ..+|+++++-+.
T Consensus 407 ~~~~~~~f~~aiF~~n~ 423 (530)
T PLN02881 407 CASNGVPFKKALFVPNI 423 (530)
T ss_pred HHhcCCCCCeEEEcCCc
Confidence 542 358999998866
No 43
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.98 E-value=2.2e-31 Score=287.83 Aligned_cols=220 Identities=30% Similarity=0.307 Sum_probs=160.8
Q ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeE--EecCcCCCCcc-------hhhH--HhcccCCCcEEEEeeccCCc
Q 013570 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGNWNNRVG-------VALS--LIGIDRAVDIAVLEMGMSGK 197 (440)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~--~t~g~~n~~~g-------~p~~--l~~~~~~~~~~VlE~g~~~~ 197 (440)
..+.|+|+||||||||||++||+++|+..|++++ ++.|.+++... .|.+ .+..+.+++++|+|++..
T Consensus 477 ~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~-- 554 (727)
T PRK14016 477 DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKSARRVLMNPDVEAAVLETARG-- 554 (727)
T ss_pred CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEEeccccccCHHHHHHHhcCCCCCEEEEEcCCC--
Confidence 4567999999999999999999999998998873 45666543322 2333 233566789999999843
Q ss_pred chHHhhccccCCcEEEEcCCChhhhccCC--CHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccC
Q 013570 198 GEILELARMARPEIRVVLNVGDSHLESLG--SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275 (440)
Q Consensus 198 g~~~~~~~~~~p~vaviTNi~~dHl~~~g--s~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~ 275 (440)
+.+.....+.+|+++|||||++|||++|+ |+|+|+++|+.+++.++++|.+|+|.||+.+..+......++++|+.++
T Consensus 555 ~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~ 634 (727)
T PRK14016 555 GILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKPDGYAVLNADDPMVAAMAERCKGKVIFFSMDP 634 (727)
T ss_pred chhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCCCCeEEEcCCCHHHHHHHHhCCCcEEEEeCCC
Confidence 33344555679999999999999999774 9999999999999998889999999999998887732236789999764
Q ss_pred CcceEEEe----c-eEEEcCCeEEEEEeecC-eE-----EEEEeCcCc--HHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 013570 276 GCDVRLVA----A-QVANGGLGVQVVLEKER-EM-----VKFVIPSPG--LHLAINACAAAAVATLFGVSLAQVGISLSN 342 (440)
Q Consensus 276 ~ad~~~~~----~-~i~~~~~~~~f~~~~~~-~~-----~~~~l~l~G--~~nv~NalaAia~~~~lg~~~~~i~~~L~~ 342 (440)
+.++.... + .+....+. +.+.... .. ..+.+.++| .||++|++||+|+++.+|++++.|.++|++
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~--i~~~~g~~~~~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~lGi~~~~I~~~L~s 712 (727)
T PRK14016 635 DNPVIAEHRAQGGRAVYVEGDY--IVLAEGGWEIRIISLADIPLTLGGKAGFNIENALAAIAAAWALGIDIELIRAGLRT 712 (727)
T ss_pred CChHHHHHHHhCCceEEEeCCE--EEEEeCCcceeeccccccceecCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33221111 0 01011110 1111110 00 023443355 799999999999999999999999999999
Q ss_pred CCC----CCCceeE
Q 013570 343 FSP----VQMRSEL 352 (440)
Q Consensus 343 ~~~----~~gR~e~ 352 (440)
|++ .||||+.
T Consensus 713 F~~~~~~~pGR~n~ 726 (727)
T PRK14016 713 FVSDAAQAPGRFNL 726 (727)
T ss_pred cCCCccCCCccccc
Confidence 996 8999985
No 44
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.93 E-value=2.5e-25 Score=220.57 Aligned_cols=275 Identities=19% Similarity=0.214 Sum_probs=186.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecC----cCCCCc---ch-----------
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG----NWNNRV---GV----------- 174 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g----~~n~~~---g~----------- 174 (440)
.+++.|..++.. .+ ..++.+|+|+||+||.||+.++.+||++.|++++.... +...+| |.
T Consensus 55 ~m~~~L~~lg~p-~d-~~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f 132 (496)
T KOG2525|consen 55 RMRKLLERLGNP-ED-QNSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYF 132 (496)
T ss_pred HHHHHHHHhCCh-hh-hhheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHH
Confidence 555555555543 22 67799999999999999999999999999999742111 111111 11
Q ss_pred -----------------h-----hHHhc----ccCCCcEEEEeeccCCcchHHhhcccc-CCcEEEEcCCChhhhccCCC
Q 013570 175 -----------------A-----LSLIG----IDRAVDIAVLEMGMSGKGEILELARMA-RPEIRVVLNVGDSHLESLGS 227 (440)
Q Consensus 175 -----------------p-----~~l~~----~~~~~~~~VlE~g~~~~g~~~~~~~~~-~p~vaviTNi~~dHl~~~gs 227 (440)
| +|+.. ...++|++|+|+|+++. .+.++++ +|-++.||+|+.||++++|+
T Consensus 133 ~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~---~DaTNvI~kpvvcgITslG~DH~~~LG~ 209 (496)
T KOG2525|consen 133 WEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIEVGLGGE---LDATNVIEKPVVCGITSLGLDHTSFLGN 209 (496)
T ss_pred HHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEEEeccccc---cccccccccceEEEEeecCCchHHHHhh
Confidence 1 11111 26899999999999876 3444543 89999999999999999986
Q ss_pred -HHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhc-CCC-CCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCeEE
Q 013570 228 -LEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-VPR-GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMV 304 (440)
Q Consensus 228 -~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~-~~~-~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~~~ 304 (440)
+++|+.+|+.||+ ++..++.....+...+.+ .+. ...+..|-..+... ..+ .
T Consensus 210 tL~eIA~eKAGIfK---~gvpaft~~q~~e~~nvL~~ra~e~~~~L~~v~p~~~----------------~~l------s 264 (496)
T KOG2525|consen 210 TLSEIAWEKAGIFK---EGVPAFTVPQPPEALNVLKERASELGVPLFVVPPLEA----------------YEL------S 264 (496)
T ss_pred HHHHHHHHhccccc---cCCceEEcCCcHHHHHHHHHHHHhcCCCceecCCchh----------------hhh------c
Confidence 9999999999995 355566655667766665 211 01111111111000 000 0
Q ss_pred EEEeCcCcHHHHHHHHHHHHHHHHc----C---------------CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEec
Q 013570 305 KFVIPSPGLHLAINACAAAAVATLF----G---------------VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365 (440)
Q Consensus 305 ~~~l~l~G~~nv~NalaAia~~~~l----g---------------~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Ds 365 (440)
...+.+.|.||..|+.+|+.++... | +++ ....+|+++.+ |||.|++..+++.+++.|
T Consensus 265 ~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~GL~~~~w-PGR~qil~~~~~~~~llD- 341 (496)
T KOG2525|consen 265 GVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPP-AFLSGLASTDW-PGRLQILEYGRGVTWLLD- 341 (496)
T ss_pred CCcccccccchhhhhHHHHHHHHHHHHhcCcccccCCCccccccCCCH-HHhcchhhccC-CCceEEEecCCCcEEEec-
Confidence 2337789999999999998876643 1 343 45569999997 999999998788889999
Q ss_pred CCCCHHHHHHHHHHHhc-ccC-CCc--EEEEEcCCCCCChhcHHHHHHHHHHHHH-----cCCCEEEEEc
Q 013570 366 YNANPISTRAAIDLLKD-IAC-NGK--RVVILGDMLELGSTERESHEKILSYCCD-----ACIDLIGLVG 426 (440)
Q Consensus 366 yahnp~s~~~al~~l~~-~~~-~~r--~i~VlG~m~e~G~~~~~~~~~l~~~~~~-----~~~d~vi~~G 426 (440)
.||||+||+++-+++++ ... ..+ +|++|.+ .|+++ +..+...+.. .+++.|+++-
T Consensus 342 GAHt~eSaea~~~w~~~~~~~~~~~~~~illfn~---t~~~d---~~~Ll~~L~~~~~~~~~F~~Vvf~P 405 (496)
T KOG2525|consen 342 GAHTKESAEACAKWFRKAVRGLKKLTSLILLFNC---TSDRD---PPLLLPLLKPDAVIGTRFSSVVFMP 405 (496)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCccceEEEEEe---cCCcc---hHhHhHHhccccccccccceEEecc
Confidence 99999999999999987 221 122 5999999 44443 3345555544 3456665543
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.66 E-value=2.5e-16 Score=126.58 Aligned_cols=83 Identities=31% Similarity=0.521 Sum_probs=73.5
Q ss_pred CCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEE
Q 013570 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425 (440)
Q Consensus 346 ~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~ 425 (440)
+|||||++...+++++|+| |||||+|+++++++++++.+.+|+++|||+|.++|+++.+.|.++++.+.++ .|.|+++
T Consensus 1 vpgR~e~v~~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~-~d~vi~~ 78 (91)
T PF02875_consen 1 VPGRMEVVREPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQL-ADVVILT 78 (91)
T ss_dssp ETTSSEEEEEETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTC-SSEEEEE
T ss_pred CCCCcEEEeeCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhc-CCEEEEc
Confidence 4899999998889999999 9999999999999999986578999999999999999999999999999987 6789999
Q ss_pred cCchh
Q 013570 426 GDRVV 430 (440)
Q Consensus 426 G~~~~ 430 (440)
|+...
T Consensus 79 ~~~~r 83 (91)
T PF02875_consen 79 GDNPR 83 (91)
T ss_dssp TSBTT
T ss_pred CCCCC
Confidence 98764
No 46
>PF01225 Mur_ligase: Mur ligase family, catalytic domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR000713 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the N-terminal domain of several stage 2 Mur ligases, including: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The N-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases C-terminal domain (see IPR004101 from INTERPRO).; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 2XJA_A 2WTZ_A 1E8C_A 3HN7_A 3EAG_A 1J6U_A 2AM2_A 2AM1_A 2F00_B 1GQY_B ....
Probab=99.42 E-value=6.9e-15 Score=116.12 Aligned_cols=71 Identities=31% Similarity=0.475 Sum_probs=63.4
Q ss_pred CceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEecccc--CC-------CCceEEEEcCCCCccHHH
Q 013570 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC--NN-------WDKGFVQVEGNGNVNTLN 116 (440)
Q Consensus 46 i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~--~~-------~~~~~i~V~~~~~~d~~~ 116 (440)
|++|++|||.+.+ |+||||++|.++|||+|+++|++ +||.++++++.. +. ...++|.|+ |+++
T Consensus 2 i~~i~~dSr~v~~--g~lF~a~~G~~~dG~~fi~~a~~-~Ga~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-----~~~~ 73 (83)
T PF01225_consen 2 IHGISIDSRKVSP--GALFFAIKGERVDGHDFIEDAIA-KGAAAVVVDKDASISPDNPEVPAADVPVIPVE-----DTRQ 73 (83)
T ss_dssp EEEEETTSGGHHH--HHHHHHHTTSEEEEECSCHHHHH-TT-EEEESSSGGTSTTTSHHHHHHHHTTEEEE-----EHHH
T ss_pred EEEEEECcCccCh--hHEEEEcCCccccchhhhhHHHH-CCCeEEEEcCccccccccHhHHhcCCCEEEEC-----CHHH
Confidence 6789999999999 99999999999999999999999 999999999876 11 156789999 9999
Q ss_pred HHHHHHHH
Q 013570 117 SLVNMACY 124 (440)
Q Consensus 117 al~~la~~ 124 (440)
+|+.|++.
T Consensus 74 ~L~~la~~ 81 (83)
T PF01225_consen 74 ALGELAAA 81 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999983
No 47
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.63 E-value=1.3 Score=43.00 Aligned_cols=123 Identities=24% Similarity=0.352 Sum_probs=73.4
Q ss_pred HHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeEE---------ecCcC-CCCc----------------
Q 013570 121 MACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ---------SYGNW-NNRV---------------- 172 (440)
Q Consensus 121 la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~---------t~g~~-n~~~---------------- 172 (440)
|...|.+ .-+..+|||||+ .||||...-|..-|...|.+|.- |.|+. .+++
T Consensus 41 l~~l~p~-tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~ 119 (323)
T COG1703 41 LRALYPR-TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSS 119 (323)
T ss_pred HHHHhhc-CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeec
Confidence 3344444 556789999998 57999999999999999998731 12221 1111
Q ss_pred -------chhh---HHhc-c-cCCCcEEEEeeccCCcchHH-hhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhc
Q 013570 173 -------GVAL---SLIG-I-DRAVDIAVLEMGMSGKGEIL-ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239 (440)
Q Consensus 173 -------g~p~---~l~~-~-~~~~~~~VlE~g~~~~g~~~-~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~ 239 (440)
|+.. .... + ..+.|+.++|.. +.|+-+ .+.+ ..|+.+++-+. -.| +++--.|+.++
T Consensus 120 ~srG~lGGlS~at~~~i~~ldAaG~DvIIVETV--GvGQsev~I~~--~aDt~~~v~~p-----g~G--D~~Q~iK~Gim 188 (323)
T COG1703 120 PSRGTLGGLSRATREAIKLLDAAGYDVIIVETV--GVGQSEVDIAN--MADTFLVVMIP-----GAG--DDLQGIKAGIM 188 (323)
T ss_pred CCCccchhhhHHHHHHHHHHHhcCCCEEEEEec--CCCcchhHHhh--hcceEEEEecC-----CCC--cHHHHHHhhhh
Confidence 1110 0111 1 358999999983 444322 1222 34555555542 122 45556688888
Q ss_pred ccCCCCcEEEEeCCcHHHH
Q 013570 240 QESKLGDVCVLNADDPLVA 258 (440)
Q Consensus 240 ~~~~~~~~~Vln~dd~~~~ 258 (440)
+- ...+|+|..|....
T Consensus 189 Ei---aDi~vINKaD~~~A 204 (323)
T COG1703 189 EI---ADIIVINKADRKGA 204 (323)
T ss_pred hh---hheeeEeccChhhH
Confidence 64 57899998886544
No 48
>PF04613 LpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ; InterPro: IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis []: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] This enzyme contains several hexapeptide repeats and forms part of the wider bacterial transferase hexapeptide repeat family. This entry represents the non-repeating region of the enzyme.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0009245 lipid A biosynthetic process; PDB: 3PMO_A 3EH0_B 2IU9_A 2IU8_B 2IUA_A.
Probab=92.96 E-value=0.24 Score=37.46 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=37.8
Q ss_pred ccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccC---CCCceEEEEcCCCCccHHHHHHHHHHH
Q 013570 55 ILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACY 124 (440)
Q Consensus 55 ~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~---~~~~~~i~V~~~~~~d~~~al~~la~~ 124 (440)
..++ |+|=|. +...|.+++.. -.|.+||+++... ..+.++|+|+ |++.++.++.++
T Consensus 13 ~A~~--~~isF~------~~~ky~~~l~~-s~A~avlv~~~~~~~~~~~~~~iiv~-----nP~~afa~~~~~ 71 (72)
T PF04613_consen 13 EAGP--GDISFL------DNPKYLKELKN-SKAGAVLVPEEFAEEVPEGKALIIVD-----NPRLAFAKLLQL 71 (72)
T ss_dssp T--T--TEEEEE-------SSCGGGGGGG----SEEEEEHHHHTCCCSSSEEEECS------HHHHHHHHHHH
T ss_pred hcCC--CCEEEe------cCHHHHHHHHh-CCCeEEEEcchhcccCCCCccEEEEC-----CHHHHHHHHHHh
Confidence 3566 888665 34568888777 7888999887622 2378999999 999999998874
No 49
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.29 E-value=0.99 Score=43.02 Aligned_cols=123 Identities=22% Similarity=0.311 Sum_probs=64.7
Q ss_pred HHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeEE---------ecCcC-CCCc--------------
Q 013570 119 VNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ---------SYGNW-NNRV-------------- 172 (440)
Q Consensus 119 ~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~---------t~g~~-n~~~-------------- 172 (440)
..|...|.+ ..+..+|||||+ .||||...-|...|++.|.++.- |.|.. ..++
T Consensus 17 ~ll~~l~~~-~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIR 95 (266)
T PF03308_consen 17 ELLKRLYPH-TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIR 95 (266)
T ss_dssp HHHHHHGGG-TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEE
T ss_pred HHHHHHHhh-cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEe
Confidence 334445555 456789999998 57999999998888889988731 11211 1111
Q ss_pred ---------chhhHHh---c-c-cCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHh
Q 013570 173 ---------GVALSLI---G-I-DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238 (440)
Q Consensus 173 ---------g~p~~l~---~-~-~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i 238 (440)
|++.... . + ..+.|+.++|.---+..++ ++.++++.-+.|++.-.-|-+. ..|+.|
T Consensus 96 S~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-~I~~~aD~~v~v~~Pg~GD~iQ---------~~KaGi 165 (266)
T PF03308_consen 96 SMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV-DIADMADTVVLVLVPGLGDEIQ---------AIKAGI 165 (266)
T ss_dssp EE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-HHHTTSSEEEEEEESSTCCCCC---------TB-TTH
T ss_pred ecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-HHHHhcCeEEEEecCCCccHHH---------HHhhhh
Confidence 1111111 1 1 3579999999831122232 2445556666666655444433 346677
Q ss_pred cccCCCCcEEEEeCCcH
Q 013570 239 FQESKLGDVCVLNADDP 255 (440)
Q Consensus 239 ~~~~~~~~~~Vln~dd~ 255 (440)
++- ...+|+|..|.
T Consensus 166 mEi---aDi~vVNKaD~ 179 (266)
T PF03308_consen 166 MEI---ADIFVVNKADR 179 (266)
T ss_dssp HHH----SEEEEE--SH
T ss_pred hhh---ccEEEEeCCCh
Confidence 654 46889997764
No 50
>PRK15453 phosphoribulokinase; Provisional
Probab=90.00 E-value=0.44 Score=46.14 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=24.6
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhCCC
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALALESLGV 159 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~ 159 (440)
.+.++|+|||+. ||||++..++++|+..+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~ 34 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENI 34 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 456899999985 799999999999964443
No 51
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=89.62 E-value=1.5 Score=43.89 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=58.4
Q ss_pred ccCHHHHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCC---CC
Q 013570 26 IWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN---WD 100 (440)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~---~~ 100 (440)
+|+|+||++.+++++.++.+ +.+++.=. +..+ ++|-|. +...|.+..-. -.|.++|+++.... .+
T Consensus 2 ~~~l~~i~~~~~~~~~~~~~~~i~gva~l~-~a~~--~~LsFl------~~~k~~~~l~~-~~A~a~Iv~~d~~~~~p~~ 71 (343)
T PRK00892 2 SLTLAELAELLGAELVGDGDIEITGVASLE-EAGP--GQISFL------ANPKYRKQLAT-TKAGAVIVSPDDAEFVPAG 71 (343)
T ss_pred CccHHHHHHHhCCEEeCCCCceEEeecccc-cCCC--CeEEEE------cCchhHHHHhc-cCCeEEEechhhhhhccCC
Confidence 47999999999999876543 55554322 3356 788444 23456666555 77888888765432 24
Q ss_pred ceEEEEcCCCCccHHHHHHHHHHHh
Q 013570 101 KGFVQVEGNGNVNTLNSLVNMACYA 125 (440)
Q Consensus 101 ~~~i~V~~~~~~d~~~al~~la~~~ 125 (440)
..++.++ |++.++..+.+.+
T Consensus 72 ~~~i~~~-----~p~~~~~~~~~~~ 91 (343)
T PRK00892 72 NALLVVK-----NPYLAFARLAQLF 91 (343)
T ss_pred ceEEEeC-----CHHHHHHHHHHHh
Confidence 5677899 9999999888743
No 52
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=89.18 E-value=0.48 Score=44.62 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhCCCCeEEecC
Q 013570 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g 166 (440)
+|+|+|.-||||+..-|+.-|++.|+++..|..
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTT 33 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTT 33 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence 589999999999999999999999999865443
No 53
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=89.12 E-value=1.1 Score=43.98 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=65.1
Q ss_pred ccCHHHHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCC---CC
Q 013570 26 IWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN---WD 100 (440)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~---~~ 100 (440)
.++|+||++.++.++.++.+ ++++.. --+..+ ++++|. ++..|.++... -.|.++++++.... .+
T Consensus 3 ~~~l~~la~~~~~e~~g~~~~~i~~va~-l~~a~~--~~i~f~------~~~ky~~~l~~-s~Agaviv~~~~~~~~~~~ 72 (338)
T COG1044 3 SYTLAELAQQLGAELRGDGDRVITGVAP-LDEAQP--GDISFL------ANPKYRKELKT-SRAGAVIVSAKDAAFAPAK 72 (338)
T ss_pred cchHHHHHHhhCcEEecCCceeeeecch-hhhcCc--ccceee------cChhhhhhccc-CcccEEEecHHHHhcccCC
Confidence 36999999999999887643 555543 334456 788776 56778888888 88999999875432 26
Q ss_pred ceEEEEcCCCCccHHHHHHHHHHHhhc
Q 013570 101 KGFVQVEGNGNVNTLNSLVNMACYARN 127 (440)
Q Consensus 101 ~~~i~V~~~~~~d~~~al~~la~~~~~ 127 (440)
.+.++++ |+..++..+++++..
T Consensus 73 ~~~Lv~~-----~P~~~fA~~~~~f~~ 94 (338)
T COG1044 73 KNALVVK-----DPYLAFAKVAQLFYR 94 (338)
T ss_pred ceEEEeC-----CchHHHHHHHHHhcc
Confidence 6789999 999999999994333
No 54
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=89.00 E-value=0.76 Score=46.83 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHH-hhcCCCCCcEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 113 NTLNSLVNMACY-ARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 113 d~~~al~~la~~-~~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++.+....++.. .|.+..+.++|+|+ |=.|||||+.-|++.|...|++|.
T Consensus 86 eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVL 139 (387)
T PHA02519 86 QISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVL 139 (387)
T ss_pred HHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 555544444442 33334557899999 888999999999999988999985
No 55
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=89.00 E-value=2.1 Score=42.43 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=29.9
Q ss_pred CCCCcEEEE----eCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+.|||.| .|-.|||+++..|...|++.|+++.
T Consensus 46 ~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ 83 (325)
T PRK00652 46 RAPVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPG 83 (325)
T ss_pred CCCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEE
Confidence 345789998 7999999999999999999999874
No 56
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=88.77 E-value=0.72 Score=47.02 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=38.3
Q ss_pred cHHHHHHHHHH-HhhcCCCCCcEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 113 NTLNSLVNMAC-YARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 113 d~~~al~~la~-~~~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++.+.+..+.. ..+.+..+.++|+|+ |=.|||||+.-|++.|...|++|.
T Consensus 86 ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVL 139 (388)
T PRK13705 86 QINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVL 139 (388)
T ss_pred HHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeE
Confidence 55555555554 334444567899999 888999999999999988999985
No 57
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=87.87 E-value=2.7 Score=41.51 Aligned_cols=72 Identities=21% Similarity=0.222 Sum_probs=47.3
Q ss_pred CcccchHHHHhcCCCeEEEeccccCCCCceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCC---CChHHHHHH
Q 013570 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS---VGKSTTKSM 149 (440)
Q Consensus 73 dg~~~i~~A~~~~Ga~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGT---nGKTTT~~m 149 (440)
++.+.+..|+. .||.-++.-+.. -. ...+++..+ ...+....++|+|+|. .||||++.-
T Consensus 52 ~~~~~~~~a~~-~Ga~~~l~~P~~---------~~-----~l~~~l~~~---~~~~~~~~~vIav~~~KGGvGkTT~a~n 113 (322)
T TIGR03815 52 PGGALWRAAAA-VGAEHVAVLPEA---------EG-----WLVELLADL---DQSPPARGVVVAVIGGRGGAGASTLAAA 113 (322)
T ss_pred CCHHHHHHHHH-hChhheeeCCCC---------HH-----HHHHHHHhh---ccCCCCCceEEEEEcCCCCCcHHHHHHH
Confidence 34557778888 998765543211 11 333344333 2333456789998865 579999999
Q ss_pred HHHHHHhCCCCeE
Q 013570 150 IALALESLGVNVF 162 (440)
Q Consensus 150 l~~iL~~~g~~~~ 162 (440)
|+..|.+.|.+|.
T Consensus 114 LA~~la~~g~~Vl 126 (322)
T TIGR03815 114 LALAAARHGLRTL 126 (322)
T ss_pred HHHHHHhcCCCEE
Confidence 9999988888874
No 58
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=87.75 E-value=0.67 Score=38.50 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 367 ahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.-||.++..+|+.+.....+...++++.+....|..-.+++..-.+.+++.++..+++.|.+..
T Consensus 2 vKNP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~~~i~~viv~G~Ra~ 65 (113)
T PF08353_consen 2 VKNPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLADPNIKQVIVSGTRAE 65 (113)
T ss_pred CcCcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhcCCCCEEEEEeeeHH
Confidence 3599999999999977654567778888877778776677777778888777999999998865
No 59
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=87.56 E-value=1.6 Score=43.40 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=57.5
Q ss_pred HHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCC--CCceEEEE
Q 013570 31 EIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106 (440)
Q Consensus 31 ~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~--~~~~~i~V 106 (440)
||++.+++++.++.+ +++++.= ....+ ++|-|+ ...+|++++.+ ..|.++++++.... +..++++|
T Consensus 1 ~ia~~~~~~~~g~~~~~i~~~~~~-~~a~~--~~l~f~------~~~k~~~~l~~-~~a~aviv~~~~~~~~~~~~~~~v 70 (324)
T TIGR01853 1 ELAERLGAELKGNGDIVITGVAPL-EKAKA--NHITFL------ANPKYLKHLKS-SQAGAVIVSPDDQGLPAKCAALVV 70 (324)
T ss_pred ChhHHhCCEEeCCCCceEEcccCh-hhCCC--CeEEEE------eCHHHHHHHhh-cCCcEEEecchhhcccCcceEEEE
Confidence 578899998877543 5555432 23466 898766 23569988877 88999998765431 24568889
Q ss_pred cCCCCccHHHHHHHHHHHh
Q 013570 107 EGNGNVNTLNSLVNMACYA 125 (440)
Q Consensus 107 ~~~~~~d~~~al~~la~~~ 125 (440)
+ |++.++..+.+++
T Consensus 71 ~-----~p~~~~~~~~~~~ 84 (324)
T TIGR01853 71 K-----DPYLAFAKVAELF 84 (324)
T ss_pred C-----CHHHHHHHHHHHh
Confidence 9 9999999999854
No 60
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=86.78 E-value=0.92 Score=46.51 Aligned_cols=37 Identities=32% Similarity=0.376 Sum_probs=31.5
Q ss_pred hcCCCCCcEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 126 RNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 126 ~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|.|..++++|+|+ |=.|||||+.-|++.|...|++|.
T Consensus 115 r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVL 154 (405)
T PRK13869 115 RRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVL 154 (405)
T ss_pred CCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceE
Confidence 3445567899999 888999999999999988999985
No 61
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=86.64 E-value=0.9 Score=40.26 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=27.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++++|+|. .||||+.+=|-..|++.|+++.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa 34 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVA 34 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEE
Confidence 689999997 5899999999999999999984
No 62
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=86.62 E-value=1.6 Score=39.97 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=27.7
Q ss_pred CCCCcEEEEeCC---CChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+.++|+||++ .||||++..|+..|...|.+|.
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTL 50 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 334888999844 5799999999999988888875
No 63
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=86.34 E-value=0.85 Score=40.69 Aligned_cols=26 Identities=38% Similarity=0.732 Sum_probs=20.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.|+|||| .||||++..|+ -| |+++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l---g~~~i 28 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL---GYKVI 28 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-Hh---CCcee
Confidence 36999999 57999999988 55 67664
No 64
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=86.28 E-value=1.6 Score=44.05 Aligned_cols=52 Identities=27% Similarity=0.290 Sum_probs=40.3
Q ss_pred CccHHHHHHHHHHHhh-cCCCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 111 NVNTLNSLVNMACYAR-NSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 111 ~~d~~~al~~la~~~~-~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|+|+.+-|..+-.... .+..+.++|+|+|. .||||...-+-..|++.|+++.
T Consensus 183 nINTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~ 237 (366)
T PRK14489 183 NVNTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIG 237 (366)
T ss_pred cCCCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 6788888877655332 22345789999994 6899999999999988899874
No 65
>PRK06696 uridine kinase; Validated
Probab=85.91 E-value=2.3 Score=39.67 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=33.2
Q ss_pred HHHHHHHHHh-hcCCCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 116 NSLVNMACYA-RNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 116 ~al~~la~~~-~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
+.++.|+... ........+|+|+|- .||||++..|+..|.+.|..+
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v 53 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPV 53 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 4556677633 222345679999974 689999999999997666554
No 66
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=85.78 E-value=2.3 Score=40.87 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=36.2
Q ss_pred HHHHHHHHHH--HhhcCCCCCcEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 114 TLNSLVNMAC--YARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 114 ~~~al~~la~--~~~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+++..|.. .+.......++|+|| |-.||||++..|+..|.+.|.+|.
T Consensus 83 ~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vl 136 (274)
T TIGR03029 83 QVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTL 136 (274)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4566666665 223324567899999 778999999999999977787774
No 67
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=85.41 E-value=5 Score=34.57 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=23.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|+|+|.|- .||||.++.|-..|.+.|+++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 57888875 5999999999998988999985
No 68
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=85.38 E-value=2.7 Score=38.59 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=27.8
Q ss_pred CCCCcEEEEe---CCCChHHHHHHHHHHHHh-CCCCeE
Q 013570 129 RFSGVLVGVT---GSVGKSTTKSMIALALES-LGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VT---GTnGKTTT~~ml~~iL~~-~g~~~~ 162 (440)
....++|+|| |-.||||++..|++.|.. .|++|.
T Consensus 32 ~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VL 69 (207)
T TIGR03018 32 KKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVL 69 (207)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 3457899999 677999999999999954 588875
No 69
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=84.88 E-value=1.3 Score=42.42 Aligned_cols=30 Identities=33% Similarity=0.570 Sum_probs=24.7
Q ss_pred cEEEE--eCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGV--TGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~V--TGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+| -|-.|||||+.-|++.|.+.|++|.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVl 33 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVM 33 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEE
Confidence 34444 4888999999999999988998885
No 70
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=84.70 E-value=1.3 Score=34.27 Aligned_cols=40 Identities=33% Similarity=0.387 Sum_probs=31.2
Q ss_pred EEEeCC--CChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeecc
Q 013570 135 VGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (440)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~ 194 (440)
+.++|. .||||++..++..|.+.|+++...- ++.++|.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~--------------------d~iivD~~~ 43 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID--------------------DYVLIDTPP 43 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC--------------------CEEEEeCCC
Confidence 566655 6999999999999988888875322 788888863
No 71
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=84.08 E-value=1.5 Score=40.47 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=24.4
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|+ |=.||||++.-|++.|.+.|++|.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvL 32 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVL 32 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEE
Confidence 46666 567899999999999988998874
No 72
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=83.96 E-value=0.99 Score=41.07 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=23.0
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhCCCC
Q 013570 134 LVGVTG--SVGKSTTKSMIALALESLGVN 160 (440)
Q Consensus 134 vI~VTG--TnGKTTT~~ml~~iL~~~g~~ 160 (440)
+|||+| ..||||++..|...|.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 688987 579999999999999767665
No 73
>COG2403 Predicted GTPase [General function prediction only]
Probab=83.94 E-value=1.3 Score=44.23 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=28.9
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..|+|+|||| .|||+++..+.++|++.|++++
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~ 159 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC 159 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence 4689999998 5999999999999999999974
No 74
>PRK05439 pantothenate kinase; Provisional
Probab=83.71 E-value=1.5 Score=43.20 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=26.7
Q ss_pred HHHHHHhhcC-CCCCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 013570 119 VNMACYARNS-RFSGVLVGVTGSV--GKSTTKSMIALALES 156 (440)
Q Consensus 119 ~~la~~~~~p-~~~~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (440)
..+..|+..+ .....+|||||+. ||||++..|..+|..
T Consensus 72 ~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 72 AALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred HHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3344455431 2335589999985 699999999999954
No 75
>COG4240 Predicted kinase [General function prediction only]
Probab=83.17 E-value=3.1 Score=38.90 Aligned_cols=49 Identities=31% Similarity=0.408 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHHHhCC-CCeE
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLG-VNVF 162 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g-~~~~ 162 (440)
-....+.+++.++.. ..+.-++||.|. .||||++..|..+|...| +++.
T Consensus 32 l~Lpll~Kiap~~qe-~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~ 83 (300)
T COG4240 32 LHLPLLAKIAPWAQE-RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTA 83 (300)
T ss_pred HHHHHHHhhhhhhhh-cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceE
Confidence 455666666654333 455668999997 689999999999998887 4553
No 76
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=83.15 E-value=1.7 Score=41.90 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=26.1
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|+ |=.|||||+.-|+..|.+.|++|.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVl 33 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKIL 33 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeE
Confidence 577777 567899999999999999999985
No 77
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=82.73 E-value=5 Score=34.19 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=40.1
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcc-------hHHhhccccCCcEEE
Q 013570 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG-------EILELARMARPEIRV 213 (440)
Q Consensus 141 nGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g-------~~~~~~~~~~p~vav 213 (440)
.|||+++.-+...|++.|.++....-. ..+|+.++|-. ++.. ...++...+...+.+
T Consensus 10 ~Gkt~~~~~l~~~l~~~~~~v~~~kp~---------------~~~d~vliEGa-Gg~~~p~~~~~~~~d~~~~~~~~vll 73 (134)
T cd03109 10 IGKTVATAILARALKEKGYRVAPLKPV---------------QTYDFVLVEGA-GGLCVPLKEDFTNADVAKELNLPAIL 73 (134)
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEecC---------------CCCCEEEEECC-CccccCCCCCCCHHHHHHHhCCCEEE
Confidence 799999999999998899888532111 01689999974 2221 222333334566777
Q ss_pred EcCCCh
Q 013570 214 VLNVGD 219 (440)
Q Consensus 214 iTNi~~ 219 (440)
+|+...
T Consensus 74 V~~~~~ 79 (134)
T cd03109 74 VTSAGL 79 (134)
T ss_pred EEcCCC
Confidence 776553
No 78
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=82.45 E-value=0.77 Score=48.04 Aligned_cols=96 Identities=20% Similarity=0.153 Sum_probs=64.3
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhc----ccCCCcEEEEeeccCCcchHHhhcc
Q 013570 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG----IDRAVDIAVLEMGMSGKGEILELAR 205 (440)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~----~~~~~~~~VlE~g~~~~g~~~~~~~ 205 (440)
...++|.|+||+||+++..+....+.+.+.++++..|. |...++...+.+ ....+.++..|.-.-+.+... -..
T Consensus 62 ~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGT-NgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~-~~~ 139 (475)
T COG0769 62 AGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGT-NGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILE-PTG 139 (475)
T ss_pred cCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCC-CcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCccc-ccC
Confidence 34569999999999999999999997656777665553 443343322222 233456666665332233333 233
Q ss_pred ccCCcEEEEcCCChhhhccCCC
Q 013570 206 MARPEIRVVLNVGDSHLESLGS 227 (440)
Q Consensus 206 ~~~p~vaviTNi~~dHl~~~gs 227 (440)
...|+...++|+-.|+++..++
T Consensus 140 ~tTP~~~~l~~~~~~~~d~~~e 161 (475)
T COG0769 140 LTTPEALDLQNLLRDLLDRGAE 161 (475)
T ss_pred CCCccHHHHHHHHHHHHHcCCc
Confidence 5789999999999999998875
No 79
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=82.16 E-value=2.1 Score=40.05 Aligned_cols=31 Identities=32% Similarity=0.299 Sum_probs=27.8
Q ss_pred CcEEEEeCCC---ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~~~ 162 (440)
++.+-||||. |||.++..|.+.|++.|+++.
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~ 35 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVA 35 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeE
Confidence 4678999996 999999999999999999874
No 80
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=82.09 E-value=2 Score=43.65 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=29.5
Q ss_pred CCCCCcEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 128 SRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 128 p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|..+.++|+|+ |-.|||||+.-|+..|...|++|.
T Consensus 100 ~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVL 137 (387)
T TIGR03453 100 GGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVL 137 (387)
T ss_pred CCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEE
Confidence 34556889888 778999999999999988899985
No 81
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=81.48 E-value=2.1 Score=40.27 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=26.6
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++|+|+| -.||||+..-|...|++.|+++.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~ 33 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVA 33 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEE
Confidence 46899999 78999999888888888898874
No 82
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=81.20 E-value=2.3 Score=39.94 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=26.1
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++|+|+ |-.||||++.-|+..|.+.|++|.
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVL 34 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 3577776 577999999999999988899885
No 83
>PRK07667 uridine kinase; Provisional
Probab=81.14 E-value=4 Score=37.11 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=25.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
..+|||+|- .||||++..|.+.|.+.|.++
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~ 48 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPF 48 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 379999985 689999999999997766654
No 84
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=81.06 E-value=1.8 Score=41.71 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=23.2
Q ss_pred EEEEeCCC--ChHHHHHHHHHHHHhCCCCe
Q 013570 134 LVGVTGSV--GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL~~~g~~~ 161 (440)
+|||||+. ||||++.-+.++|++.|.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v 30 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHP 30 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCce
Confidence 58999984 79999999999997666544
No 85
>PHA02518 ParA-like protein; Provisional
Probab=80.70 E-value=2.4 Score=38.69 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=24.2
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|+ |=.||||++..|+..|.+.|++|.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vl 33 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVL 33 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 45555 667899999999999988898885
No 86
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=80.69 E-value=16 Score=29.09 Aligned_cols=47 Identities=28% Similarity=0.295 Sum_probs=34.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccC
Q 013570 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~ 195 (440)
+++--|-.||||++..++..|.+.|.++...-.. ...++.|+.++.+
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d---------------~~~d~viiD~p~~ 50 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLD---------------PQYDYIIIDTPPS 50 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCC---------------CCCCEEEEeCcCC
Confidence 4555688999999999999997778777432111 1178999999744
No 87
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=80.33 E-value=1.8 Score=42.19 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALES 156 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (440)
...+|||+|.+ ||||++.+|..+|..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34689999986 799999999999953
No 88
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=80.16 E-value=2.5 Score=40.68 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=25.4
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|. |=.|||||+--|+..|.+.|++|.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVL 33 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVM 33 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEE
Confidence 567776 556799999999999999999984
No 89
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=80.02 E-value=29 Score=29.73 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=55.9
Q ss_pred CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHH
Q 013570 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410 (440)
Q Consensus 331 ~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l 410 (440)
+|++++.++..+..+ .+..+.-...++...++..++.+++....+ +.+++|+....++ ..+.+.
T Consensus 41 vp~e~i~~~a~~~~~------------d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~-~~i~vGG~~~~~~---~~~~~~ 104 (137)
T PRK02261 41 TSQEEFIDAAIETDA------------DAILVSSLYGHGEIDCRGLREKCIEAGLGD-ILLYVGGNLVVGK---HDFEEV 104 (137)
T ss_pred CCHHHHHHHHHHcCC------------CEEEEcCccccCHHHHHHHHHHHHhcCCCC-CeEEEECCCCCCc---cChHHH
Confidence 688999998877664 222332224577888899999998774234 4455554332232 234445
Q ss_pred HHHHHHcCCCEEEEEcCchhhhhhh
Q 013570 411 LSYCCDACIDLIGLVGDRVVVQCKW 435 (440)
Q Consensus 411 ~~~~~~~~~d~vi~~G~~~~~~~~~ 435 (440)
-+.+.++++|.||--|........|
T Consensus 105 ~~~l~~~G~~~vf~~~~~~~~i~~~ 129 (137)
T PRK02261 105 EKKFKEMGFDRVFPPGTDPEEAIDD 129 (137)
T ss_pred HHHHHHcCCCEEECcCCCHHHHHHH
Confidence 5556677899999888766544443
No 90
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=80.01 E-value=5.4 Score=39.72 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCCCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+..+|+|||+. ||||++..+...|+..|.++.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~ 88 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVA 88 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4456799999986 799999999999988888764
No 91
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=79.89 E-value=2.6 Score=39.64 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=25.5
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|+ |=.|||||+..|+..|.+.|++|.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vl 34 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVA 34 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 567776 567899999999999999998874
No 92
>PRK10037 cell division protein; Provisional
Probab=79.85 E-value=2.6 Score=39.97 Aligned_cols=31 Identities=32% Similarity=0.618 Sum_probs=26.2
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++|+|. |=.|||||+.-|+..|.+.|++|.
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVL 34 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVL 34 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEE
Confidence 3567777 667899999999999999999985
No 93
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=78.03 E-value=3.2 Score=40.54 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=26.7
Q ss_pred CCcEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++++|+|. |-.|||||+.-|+..|.+.|++|.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVL 36 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKIL 36 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 45677776 667899999999999999999985
No 94
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=77.98 E-value=3 Score=40.23 Aligned_cols=30 Identities=40% Similarity=0.405 Sum_probs=25.4
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|+ |=.|||||+.-|++.|.+.|++|.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVL 33 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVL 33 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEE
Confidence 566666 667899999999999999999884
No 95
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=77.90 E-value=3.6 Score=40.89 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=28.1
Q ss_pred CCCcEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+.++|+|| |..||||++.-|+..|.+.|++|.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVl 63 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVL 63 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 457788888 578999999999999988898885
No 96
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=77.68 E-value=3.2 Score=39.73 Aligned_cols=30 Identities=40% Similarity=0.633 Sum_probs=25.1
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|. |=.|||||+.-|++.|.+.|++|.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVL 34 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVL 34 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 456665 778999999999999988999884
No 97
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=77.29 E-value=2.6 Score=39.23 Aligned_cols=30 Identities=47% Similarity=0.614 Sum_probs=26.8
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|.|| |-.|||||+.-|...|...|.+|.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~ 35 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVV 35 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEE
Confidence 578888 788999999999999999999985
No 98
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=77.27 E-value=3.8 Score=39.67 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.8
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhCCCCe
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~ 161 (440)
+++|+|+| -.||||.+.-|...|++.| +|
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V 31 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RV 31 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CE
Confidence 46899999 8899999999999998888 76
No 99
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=77.15 E-value=2.6 Score=38.84 Aligned_cols=27 Identities=41% Similarity=0.672 Sum_probs=22.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.+||+||. .||||++.+++. + |+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~---G~~vi 30 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L---GFPVI 30 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c---CCeEE
Confidence 468999997 789999988876 4 77775
No 100
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=76.99 E-value=3.4 Score=40.46 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=24.4
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|. |-.|||||+..|++.|.+.|++|.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVL 32 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVL 32 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 45544 778999999999999989999984
No 101
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=76.89 E-value=3.4 Score=39.48 Aligned_cols=29 Identities=41% Similarity=0.620 Sum_probs=24.1
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|+ |=.|||||+.-|++.|.+.|++|.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvl 32 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVL 32 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 34554 677999999999999988999985
No 102
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=76.80 E-value=4.1 Score=35.96 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=26.5
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++|+|+| -.||||....|...|+..|+++.
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~ 33 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVA 33 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 46899999 57999999999999988888763
No 103
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=76.51 E-value=6.2 Score=36.87 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=25.9
Q ss_pred CCCCcEEEEeCCC--ChHHHHHHHHHHHHhCCCC
Q 013570 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (440)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~ 160 (440)
..+..+|||+|-+ ||||.+..|...|+..+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 4556799999986 5999999999999765544
No 104
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=76.46 E-value=9.1 Score=39.63 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=24.2
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|.++|- .|||||+.-|+..|.+.|+++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~ 127 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVG 127 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE
Confidence 446666654 5899999999999988888874
No 105
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=76.08 E-value=3.6 Score=38.85 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=25.3
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|+ |-.||||++..++..|.+.|++|.
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vl 34 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVV 34 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEE
Confidence 567776 567899999999999988888885
No 106
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=75.60 E-value=4.7 Score=38.96 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=26.1
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.++|+++|. .|||||+.-|+..|...|+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~ 104 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVL 104 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 4568888876 4799999999999988888874
No 107
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.40 E-value=20 Score=36.22 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=47.8
Q ss_pred EEEeCCCChHHHHHHHHHHHHhCCCCeEEecC-cC----------C-CCcch----------hhHHhc------ccCCCc
Q 013570 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYG-NW----------N-NRVGV----------ALSLIG------IDRAVD 186 (440)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g-~~----------n-~~~g~----------p~~l~~------~~~~~~ 186 (440)
||+-|+ |||||+.=++..+++.|+++...-+ .| | ...++ |..+.. -.+++|
T Consensus 107 VGLqG~-GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fd 185 (483)
T KOG0780|consen 107 VGLQGS-GKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFD 185 (483)
T ss_pred EeccCC-CcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCc
Confidence 455554 7999999999999999999843211 11 0 11122 333321 156788
Q ss_pred EEEEeeccCCc------chHHhhccccCCcEEEE
Q 013570 187 IAVLEMGMSGK------GEILELARMARPEIRVV 214 (440)
Q Consensus 187 ~~VlE~g~~~~------g~~~~~~~~~~p~vavi 214 (440)
+.|+..|-.|. .++..+.+.+.||-.|+
T Consensus 186 vIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~ 219 (483)
T KOG0780|consen 186 VIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIF 219 (483)
T ss_pred EEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEE
Confidence 88888764443 23445666678886665
No 108
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=75.32 E-value=3.5 Score=37.04 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=22.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
+|+|+|. .||||.+..|...|...|.++
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~ 30 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 4788876 589999999999997666554
No 109
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=75.21 E-value=3.2 Score=39.35 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=25.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
++++.|=.||||++.-|++.|.+.|.+|..
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVLA 35 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 445557778999999999999999999854
No 110
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=74.95 E-value=15 Score=36.49 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=29.7
Q ss_pred CCCCcEEEE----eCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+.|||.| +|-.|||-++..|...|++.|+++.
T Consensus 32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~ 69 (326)
T PF02606_consen 32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPA 69 (326)
T ss_pred CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceE
Confidence 456788887 5899999999999999999999873
No 111
>PRK14974 cell division protein FtsY; Provisional
Probab=74.54 E-value=4.8 Score=40.17 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=26.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
+..+|+++|.+ |||||...++..|+..|+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~ 172 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVV 172 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 35688888876 699999999999988888874
No 112
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=74.18 E-value=12 Score=38.27 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=57.5
Q ss_pred EEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHh---cccCCCcEEEEeeccC-CcchHHh----hccc
Q 013570 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI---GIDRAVDIAVLEMGMS-GKGEILE----LARM 206 (440)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~---~~~~~~~~~VlE~g~~-~~g~~~~----~~~~ 206 (440)
+|.-| .|||||+.=|+..|+..|+++.-.... +--|..+- .+...+++-++..+.. .+-++.+ ...-
T Consensus 106 vGLQG-sGKTTt~~KLA~~lkk~~~kvllVaaD----~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~ 180 (451)
T COG0541 106 VGLQG-SGKTTTAGKLAKYLKKKGKKVLLVAAD----TYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKE 180 (451)
T ss_pred EeccC-CChHhHHHHHHHHHHHcCCceEEEecc----cCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHH
Confidence 45555 499999999999999999988532211 11122111 1222333333333211 1222211 1112
Q ss_pred cCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcE-EEEe
Q 013570 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDV-CVLN 251 (440)
Q Consensus 207 ~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~-~Vln 251 (440)
-..|+.|+=.-|+.|+| |+..++-..|-+-++|..+ +|++
T Consensus 181 ~~~DvvIvDTAGRl~id-----e~Lm~El~~Ik~~~~P~E~llVvD 221 (451)
T COG0541 181 EGYDVVIVDTAGRLHID-----EELMDELKEIKEVINPDETLLVVD 221 (451)
T ss_pred cCCCEEEEeCCCccccc-----HHHHHHHHHHHhhcCCCeEEEEEe
Confidence 25688888888888876 5555555555555555554 4444
No 113
>PRK11670 antiporter inner membrane protein; Provisional
Probab=74.13 E-value=4.5 Score=40.94 Aligned_cols=32 Identities=41% Similarity=0.506 Sum_probs=28.2
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
.++|+|+ |-.|||||+.-|+..|.+.|++|..
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlL 141 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGI 141 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 4789998 7789999999999999889999853
No 114
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=73.99 E-value=3.2 Score=38.02 Aligned_cols=28 Identities=50% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+||-|| .|||||..=|++.++..+.++.
T Consensus 6 lvGptG-vGKTTt~aKLAa~~~~~~~~v~ 33 (196)
T PF00448_consen 6 LVGPTG-VGKTTTIAKLAARLKLKGKKVA 33 (196)
T ss_dssp EEESTT-SSHHHHHHHHHHHHHHTT--EE
T ss_pred EECCCC-CchHhHHHHHHHHHhhccccce
Confidence 455566 4899999999999987887763
No 115
>PRK00784 cobyric acid synthase; Provisional
Probab=73.62 E-value=4.1 Score=42.87 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=25.3
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHhCCCCe
Q 013570 133 VLVGVTGS---VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 133 ~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~ 161 (440)
+.|-|||| .|||+++..|...|++.|++|
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v 34 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRV 34 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeE
Confidence 45778877 899999999999999988876
No 116
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=73.03 E-value=4.9 Score=41.35 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=27.5
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++|+|+| -.||||..+-|-..|++.|++|.
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVa 33 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVS 33 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 47899999 78999999999999989999884
No 117
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.58 E-value=46 Score=34.16 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=24.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.++|++.|- .|||||...|+..|...|+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVg 273 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 273 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEE
Confidence 356777765 4799999999999988887774
No 118
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=72.57 E-value=5.3 Score=37.47 Aligned_cols=29 Identities=31% Similarity=0.626 Sum_probs=24.2
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|+ |-.||||++.-|+..|.+.|++|.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vl 33 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVL 33 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 45555 778999999999999988898885
No 119
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.31 E-value=17 Score=36.96 Aligned_cols=111 Identities=16% Similarity=0.201 Sum_probs=54.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHh----CCCCeE-EecCcCCCCcchhhHHhcc--cCCCcEEEEeeccCCcchHHh-
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALES----LGVNVF-QSYGNWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILE- 202 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~----~g~~~~-~t~g~~n~~~g~p~~l~~~--~~~~~~~VlE~g~~~~g~~~~- 202 (440)
.+|.+.|. .|||||+.-|++.|.. .|.+|. .+...+ +.+....+... .-+.++.+.+.. .++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~--R~aa~eQL~~~a~~lgvpv~~~~~~----~~l~~~ 248 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY--RIGAKKQIQTYGDIMGIPVKAIESF----KDLKEE 248 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc--cHHHHHHHHHHhhcCCcceEeeCcH----HHHHHH
Confidence 45555544 3899999999988853 355553 222222 22222112111 123444444431 12222
Q ss_pred hccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCC-C-CcEEEEeCCc
Q 013570 203 LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK-L-GDVCVLNADD 254 (440)
Q Consensus 203 ~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~-~-~~~~Vln~dd 254 (440)
+...-..|+.+|=..|..|- +...+.+- .++++... + .-.+|+++..
T Consensus 249 L~~~~~~DlVLIDTaGr~~~----~~~~l~el-~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 249 ITQSKDFDLVLVDTIGKSPK----DFMKLAEM-KELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred HHHhCCCCEEEEcCCCCCcc----CHHHHHHH-HHHHHhcCCCCeEEEEEcCCC
Confidence 22234678999988887763 33333222 23333222 2 4567777643
No 120
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=72.00 E-value=4.6 Score=37.67 Aligned_cols=23 Identities=43% Similarity=0.733 Sum_probs=19.5
Q ss_pred EEEEeCCC--ChHHHHHHHHHHHHh
Q 013570 134 LVGVTGSV--GKSTTKSMIALALES 156 (440)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL~~ 156 (440)
+|||+|.+ ||||++..|...|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 47888875 799999999999953
No 121
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=71.74 E-value=5 Score=35.43 Aligned_cols=26 Identities=50% Similarity=0.565 Sum_probs=22.5
Q ss_pred eCCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 138 TGSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
-|-.||||++.-|+..|.+.|++|..
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vll 33 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGL 33 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEE
Confidence 36789999999999999888999853
No 122
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=71.60 E-value=5.3 Score=38.35 Aligned_cols=29 Identities=41% Similarity=0.618 Sum_probs=24.3
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|. |=.|||||+.-|+..|.+.|++|.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vl 32 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVM 32 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 45555 667999999999999988899884
No 123
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.49 E-value=6.4 Score=38.92 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=27.7
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeEEe
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQS 164 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~~t 164 (440)
..+|-+.|.| |||||..=|++.|++.|++|...
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla 173 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA 173 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE
Confidence 5577777777 69999999999999999998643
No 124
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=71.34 E-value=38 Score=35.01 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=25.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|.++|- .|||||+.-|+..|+..|++|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~ 132 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPC 132 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 457888875 5899999999999988888874
No 125
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=70.79 E-value=4.5 Score=37.62 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHH
Q 013570 130 FSGVLVGVTG--SVGKSTTKSMIALALE 155 (440)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~iL~ 155 (440)
.+..+|||+| ..||||.+..|...|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 3456899997 5799999999999994
No 126
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=70.72 E-value=6.1 Score=35.01 Aligned_cols=31 Identities=35% Similarity=0.316 Sum_probs=27.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
--|+|||. .||||.+.-|+..|+..|+++++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG 38 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG 38 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeee
Confidence 46999997 57999999999999999999864
No 127
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=70.42 E-value=3.2 Score=39.62 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=23.5
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|. |=.|||||+.-|++.|...| +|.
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVL 33 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVL 33 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEE
Confidence 455555 77899999999999997778 874
No 128
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=70.33 E-value=7.1 Score=38.67 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=25.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|++.|.| |||||...|+..|...|.+|.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~ 146 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL 146 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE
Confidence 4677777765 799999999999988888874
No 129
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=70.15 E-value=8.7 Score=37.90 Aligned_cols=38 Identities=32% Similarity=0.286 Sum_probs=31.0
Q ss_pred CCCCcEEEEe----CCCChHHHHHHHHHHHHhCCCCeE-EecC
Q 013570 129 RFSGVLVGVT----GSVGKSTTKSMIALALESLGVNVF-QSYG 166 (440)
Q Consensus 129 ~~~~~vI~VT----GTnGKTTT~~ml~~iL~~~g~~~~-~t~g 166 (440)
+.+.|||.|- |=.|||.++.+|...|++.|+++. -+.|
T Consensus 25 ~~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 67 (311)
T TIGR00682 25 RAPVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRG 67 (311)
T ss_pred cCCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCC
Confidence 4567888874 889999999999999999999874 3444
No 130
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=69.73 E-value=8.8 Score=34.51 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=26.7
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeEE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
.++|+|.|. .||||.+.+|++-|...|+++..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~ 36 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLF 36 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 467899986 58999999999999888877753
No 131
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=69.70 E-value=6 Score=34.72 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=23.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|+|. .||||+...|...|+..|+++.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~ 31 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVA 31 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4667774 5899999999999988888874
No 132
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=69.68 E-value=6.4 Score=37.04 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=22.4
Q ss_pred EEEEe--CCCChHHHHHH-HHHHHHhCCCCeE
Q 013570 134 LVGVT--GSVGKSTTKSM-IALALESLGVNVF 162 (440)
Q Consensus 134 vI~VT--GTnGKTTT~~m-l~~iL~~~g~~~~ 162 (440)
.|+|| |-.||||.+.+ +..++.+.|+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VL 33 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVL 33 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEE
Confidence 58898 56899999999 7777755557764
No 133
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=69.35 E-value=6.5 Score=37.75 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=24.3
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHh-CCCCeE
Q 013570 133 VLVGVT--GSVGKSTTKSMIALALES-LGVNVF 162 (440)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~-~g~~~~ 162 (440)
++|+|+ |=.|||||+.-|+..|.+ .|++|.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvL 35 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVF 35 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEE
Confidence 567776 567899999999999965 599985
No 134
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=68.91 E-value=8.7 Score=34.46 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=26.6
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..++++|+| -.||||...-|...|+..|++++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg 38 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPG 38 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEE
Confidence 467999999 46899999988888977788873
No 135
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=68.61 E-value=4.7 Score=35.24 Aligned_cols=23 Identities=35% Similarity=0.276 Sum_probs=20.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.|-|-|||| .||||+++-|+..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 567999999 57999999999777
No 136
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=68.59 E-value=5.5 Score=35.56 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=23.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+.+.-|=.||||++..|+..|...|++|..
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~Vll 32 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLL 32 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccc
Confidence 344457789999999999999888999853
No 137
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.14 E-value=39 Score=34.42 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.++|+++| -.|||||..-|+..+...|.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~ 238 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVG 238 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 356888888 56899999999888877787774
No 138
>CHL00175 minD septum-site determining protein; Validated
Probab=68.11 E-value=8 Score=37.22 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=26.6
Q ss_pred CcEEEEeC---CCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTG---TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.++|+|++ =.||||++.-|++.|.+.|++|.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vl 48 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVA 48 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 56888885 57899999999999988898885
No 139
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=68.02 E-value=12 Score=37.47 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCCCcEEEE----eCCCChHHHHHHHHHHHHhCCCCeE-EecC
Q 013570 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVF-QSYG 166 (440)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g~~~~-~t~g 166 (440)
+.+.|||.| .|-.|||-++..|...|++.|+++. -+.|
T Consensus 53 ~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 95 (338)
T PRK01906 53 RLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRG 95 (338)
T ss_pred cCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecC
Confidence 456788887 5999999999999999999999874 3444
No 140
>PRK10818 cell division inhibitor MinD; Provisional
Probab=67.81 E-value=7.5 Score=37.11 Aligned_cols=30 Identities=37% Similarity=0.514 Sum_probs=25.2
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|+ |=.||||++.-|+..|.+.|++|.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vl 35 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTV 35 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 567776 567899999999999988888874
No 141
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=67.75 E-value=14 Score=31.33 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCCCc-EEEEeCC--CChHHHHHHHHHHHHhCCCC
Q 013570 118 LVNMACYARNSRFSGV-LVGVTGS--VGKSTTKSMIALALESLGVN 160 (440)
Q Consensus 118 l~~la~~~~~p~~~~~-vI~VTGT--nGKTTT~~ml~~iL~~~g~~ 160 (440)
+..+..+...|..+.| |+...|. .|||-+++||+.-|-..|.+
T Consensus 38 ~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~ 83 (127)
T PF06309_consen 38 VNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMK 83 (127)
T ss_pred HHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccC
Confidence 3344454444333333 4444443 28999999999998666655
No 142
>PRK13236 nitrogenase reductase; Reviewed
Probab=67.62 E-value=8.4 Score=37.64 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=27.4
Q ss_pred CCCcEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.++++|+|- |=.|||||+.-|+..|.+.|++|.
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVL 38 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRIL 38 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEE
Confidence 345677775 567899999999999999999985
No 143
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=67.51 E-value=6 Score=38.07 Aligned_cols=29 Identities=34% Similarity=0.538 Sum_probs=24.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCC
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVN 160 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~ 160 (440)
.-+|||.|| .||+||+..+..+|...+..
T Consensus 82 pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 82 PFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 458999999 58999999999999766554
No 144
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=67.28 E-value=5.5 Score=32.68 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
+|+|+|. .||||++..|+.-| |+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE
Confidence 4677775 58999999999988 5554
No 145
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=66.03 E-value=7 Score=34.36 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=23.8
Q ss_pred EEEeCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 135 VGVTGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..-.|-.||||++..|+..|.+.|++|.
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vl 32 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVV 32 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 3445788999999999999988999885
No 146
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=65.83 E-value=3.9 Score=37.17 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=24.7
Q ss_pred CCCCcEEEEeCCCCh--HHHHHHHHHHHHhCCCCe
Q 013570 129 RFSGVLVGVTGSVGK--STTKSMIALALESLGVNV 161 (440)
Q Consensus 129 ~~~~~vI~VTGTnGK--TTT~~ml~~iL~~~g~~~ 161 (440)
+.+.|+|+||||.|- |||+.-...|++....+.
T Consensus 2 SaKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~a 36 (289)
T COG3954 2 SAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHA 36 (289)
T ss_pred CCCCceEEEecCCCCCcccHHHHHHHHHHhcCccH
Confidence 345789999999875 556667778887776655
No 147
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=65.78 E-value=8.9 Score=36.35 Aligned_cols=30 Identities=40% Similarity=0.536 Sum_probs=23.1
Q ss_pred cEEEE---eCCCChHHHHHHHHHHHH-hCCCCeE
Q 013570 133 VLVGV---TGSVGKSTTKSMIALALE-SLGVNVF 162 (440)
Q Consensus 133 ~vI~V---TGTnGKTTT~~ml~~iL~-~~g~~~~ 162 (440)
++|+| -|=.|||||+-.|+..|. ..|++|.
T Consensus 3 ~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVL 36 (259)
T COG1192 3 KIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVL 36 (259)
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEE
Confidence 44555 488899999999999996 3447874
No 148
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=65.59 E-value=9.3 Score=35.77 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=24.3
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+-|||| .|||+++..|.+.|++.|++++
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~ 35 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVA 35 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3556655 7999999999999999998874
No 149
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=65.19 E-value=11 Score=33.25 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=26.2
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeEE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
..+|-+||. .||||++..|.+-|.+.|.++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~ 35 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYL 35 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 458889987 47999999999999999988853
No 150
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=65.11 E-value=9.4 Score=36.73 Aligned_cols=33 Identities=42% Similarity=0.525 Sum_probs=28.5
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 131 SGVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 131 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
..++|+|| |--|||||+..|+..|.+.|++|+.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVll 91 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLL 91 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 46788888 6679999999999999999999864
No 151
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=64.67 E-value=35 Score=33.34 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=28.1
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
....++|+|+|. .||||+...+...|...|+++.
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~ 66 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVA 66 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 345789999996 5799999999998888888773
No 152
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=64.58 E-value=20 Score=35.87 Aligned_cols=50 Identities=26% Similarity=0.171 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeC-C-CChHHHHHHHHHHHHhCCCCeE
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTG-S-VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTG-T-nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|+..+|..+...+..-+...|.+-|.| | .||||.+.||-.-.-+.|+++.
T Consensus 84 NlH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Pl 135 (415)
T KOG2749|consen 84 NLHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPL 135 (415)
T ss_pred hHHHHHHHHhhhhhhhhccCCEEEEECCCccchHHHHHHHHHHHHHcCCcce
Confidence 888899888764333244466666665 4 4999999887666557787763
No 153
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=64.19 E-value=16 Score=37.47 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEeCC---CChHHHHHHHHHHHHhCCCCe
Q 013570 135 VGVTGS---VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 135 I~VTGT---nGKTTT~~ml~~iL~~~g~~~ 161 (440)
|.|.|| .||||++.-|-..|++.|++|
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~V 32 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKV 32 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcc
Confidence 445554 599999999999998888765
No 154
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=64.02 E-value=9 Score=34.78 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=25.1
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.|-|||| .|||+++..|.+.|++.|.+++
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~ 33 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVG 33 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 4667777 6999999999999999998874
No 155
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=63.73 E-value=6.9 Score=37.38 Aligned_cols=25 Identities=44% Similarity=0.695 Sum_probs=22.0
Q ss_pred eCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 138 TGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
-|=.|||||+.-|+..|.+.|++|.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVL 32 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVL 32 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEE
Confidence 4778999999999999988899884
No 156
>PRK10867 signal recognition particle protein; Provisional
Probab=63.37 E-value=68 Score=33.21 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=24.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhC-CCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESL-GVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~-g~~~~ 162 (440)
..+|.++|- .|||||+.-|+..|... |.+|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~ 133 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVL 133 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEE
Confidence 457777765 47999999999988777 88774
No 157
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=63.22 E-value=7.1 Score=37.07 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=21.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.+|||||. .||||++.++..-+ |+.++
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~---G~~vi 30 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEH---HIEVI 30 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCeEE
Confidence 358999997 78999998877543 66654
No 158
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=63.03 E-value=34 Score=29.64 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=39.2
Q ss_pred HhcccCCCcEEEEeeccCCcchHH--hhcc-ccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCC
Q 013570 178 LIGIDRAVDIAVLEMGMSGKGEIL--ELAR-MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNAD 253 (440)
Q Consensus 178 l~~~~~~~~~~VlE~g~~~~g~~~--~~~~-~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~d 253 (440)
|.....++++.++=.+........ ..+. +-+|-++|||-+..+ .+-+++.++|..|-.. .-.....++.-
T Consensus 57 Li~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~-----~~~~~i~~a~~~L~~a-G~~~if~vS~~ 129 (143)
T PF10662_consen 57 LIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLP-----SDDANIERAKKWLKNA-GVKEIFEVSAV 129 (143)
T ss_pred HHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCc-----cchhhHHHHHHHHHHc-CCCCeEEEECC
Confidence 344466888888877655432111 1111 238899999998644 2456777776655532 12234555443
No 159
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=62.75 E-value=9.2 Score=39.81 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=25.8
Q ss_pred CcEEEEeCCC---ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~~~ 162 (440)
++.|-||||. |||+++..|...|++.|++|.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~ 36 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQ 36 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcc
Confidence 5667888774 599999999999999998763
No 160
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=62.47 E-value=7.6 Score=37.87 Aligned_cols=28 Identities=43% Similarity=0.618 Sum_probs=23.7
Q ss_pred EEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 135 VGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 135 I~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|+|+ |-.|||||+.-|+..|.+.|++|.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVL 32 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVL 32 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 4444 778999999999999999999984
No 161
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=61.92 E-value=11 Score=36.25 Aligned_cols=31 Identities=45% Similarity=0.444 Sum_probs=26.7
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|.|+ |-.|||||+..|+..|.+.+++++
T Consensus 47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vg 80 (300)
T KOG3022|consen 47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVG 80 (300)
T ss_pred ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEE
Confidence 3478887 889999999999999987888875
No 162
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=61.68 E-value=18 Score=40.20 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=35.3
Q ss_pred HHHHHHHHHH--hhcCCCCCcEEEEeCCC---ChHHHHHHHHHHHHhCCCCeEE
Q 013570 115 LNSLVNMACY--ARNSRFSGVLVGVTGSV---GKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 115 ~~al~~la~~--~~~p~~~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~~~~ 163 (440)
.+++..|... +..+..+.++|+||++. ||||++.-|+..|...|.+|..
T Consensus 512 ~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLl 565 (726)
T PRK09841 512 VEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF 565 (726)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 4455555441 21224567899999865 9999999999999888888853
No 163
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=61.65 E-value=12 Score=35.24 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=24.3
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|.+. |=.||||+..+|+..|.+.|.+|.
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~ 34 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVA 34 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 455554 778999999999999988888774
No 164
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=61.64 E-value=9 Score=35.46 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=28.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeEEecC
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYG 166 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t~g 166 (440)
...|++-|- .||||.+.+|+..|++.|++|..|.-
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trE 39 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTRE 39 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 456777775 68999999999999999998876543
No 165
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=61.52 E-value=11 Score=32.38 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=23.9
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTG---TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|+| ..||||++..++..|.+.+.+|.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeE
Confidence 3566665 67999999999999988888874
No 166
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=61.48 E-value=7.1 Score=37.95 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=22.1
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCC
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGV 159 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~ 159 (440)
+-+.|=+|| |||+++..++..+...|.
T Consensus 61 vll~G~pGT-GKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 61 MSFTGNPGT-GKTTVALRMAQILHRLGY 87 (284)
T ss_pred EEEEcCCCC-CHHHHHHHHHHHHHHcCC
Confidence 335678898 999999999999976664
No 167
>PRK00889 adenylylsulfate kinase; Provisional
Probab=61.21 E-value=14 Score=32.67 Aligned_cols=31 Identities=39% Similarity=0.435 Sum_probs=25.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
+..+|.++|. .||||++..|+..|...|.++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v 35 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPV 35 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 3568999985 589999999999997766555
No 168
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=60.97 E-value=14 Score=32.86 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=24.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|.|. .||||.+..|+..|...|+++.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~ 32 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVV 32 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 5777775 5899999999999988888875
No 169
>PRK03846 adenylylsulfate kinase; Provisional
Probab=60.94 E-value=19 Score=32.73 Aligned_cols=33 Identities=39% Similarity=0.596 Sum_probs=26.4
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+..+|+++| -.||||++.+|...|...|..+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~ 56 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTY 56 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 3467999999 78999999999998866665543
No 170
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=60.72 E-value=33 Score=35.45 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=22.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH-hCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALE-SLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~-~~g~~~~ 162 (440)
.+|.++|. .|||||+.-|+..|. +.|.+|.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~ 132 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVL 132 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEE
Confidence 45666654 589999999998885 4677763
No 171
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=60.36 E-value=7.3 Score=35.14 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=19.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|||||. .||||++.++.. .|+.+.
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~vi 28 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPVI 28 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EEE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCEE
Confidence 6999996 789999988866 577764
No 172
>PLN02924 thymidylate kinase
Probab=60.31 E-value=17 Score=33.97 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=29.4
Q ss_pred CCCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 128 SRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 128 p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|....+.|+|.|- .||||.+.+|+..|+..|+++.
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 3455678999985 6899999999999999998874
No 173
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.98 E-value=96 Score=26.54 Aligned_cols=90 Identities=9% Similarity=0.035 Sum_probs=57.0
Q ss_pred CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHH
Q 013570 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410 (440)
Q Consensus 331 ~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l 410 (440)
.+++++.++..+..+ ..+. +.--..|+-..++...+.|++... +.+.+++|+..- -.++..+++
T Consensus 39 v~~e~~v~aa~~~~a-----diVg-------lS~l~~~~~~~~~~~~~~l~~~gl-~~~~vivGG~~v---i~~~d~~~~ 102 (134)
T TIGR01501 39 SPQEEFIKAAIETKA-----DAIL-------VSSLYGHGEIDCKGLRQKCDEAGL-EGILLYVGGNLV---VGKQDFPDV 102 (134)
T ss_pred CCHHHHHHHHHHcCC-----CEEE-------EecccccCHHHHHHHHHHHHHCCC-CCCEEEecCCcC---cChhhhHHH
Confidence 588999888766554 1222 222135778899999999987652 334566776322 223344445
Q ss_pred HHHHHHcCCCEEEEEcCchhhhhhhh
Q 013570 411 LSYCCDACIDLIGLVGDRVVVQCKWR 436 (440)
Q Consensus 411 ~~~~~~~~~d~vi~~G~~~~~~~~~~ 436 (440)
-+.+.++++|.+|--|........|-
T Consensus 103 ~~~l~~~Gv~~vF~pgt~~~~iv~~l 128 (134)
T TIGR01501 103 EKRFKEMGFDRVFAPGTPPEVVIADL 128 (134)
T ss_pred HHHHHHcCCCEEECcCCCHHHHHHHH
Confidence 55566778999999888776555543
No 174
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=59.82 E-value=13 Score=34.36 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.4
Q ss_pred CChHHHHHHHHHHHHhCCCCeE
Q 013570 141 VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 141 nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.|||+++..|.+.|++.|+++.
T Consensus 11 ~GKT~vs~~L~~~l~~~g~~v~ 32 (222)
T PRK00090 11 VGKTVVTAALAQALREAGYSVA 32 (222)
T ss_pred cCHHHHHHHHHHHHHHcCCceE
Confidence 7999999999999999999874
No 175
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=59.59 E-value=20 Score=31.94 Aligned_cols=32 Identities=41% Similarity=0.540 Sum_probs=26.4
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhCCCCe
Q 013570 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~ 161 (440)
.+..+|.++| -.||||++..|...|...|..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~ 49 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRV 49 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3467999999 8899999999999997666544
No 176
>PRK05480 uridine/cytidine kinase; Provisional
Probab=59.42 E-value=11 Score=34.46 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.0
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
+..+|+|+|- .||||++..|...|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999997 58999999999988
No 177
>PRK08233 hypothetical protein; Provisional
Probab=59.29 E-value=8.9 Score=33.91 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
..+|+|+|. .||||.+..|+..|
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999886 58999999999888
No 178
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=59.12 E-value=12 Score=31.14 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 139 GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 139 GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|..||||++..+++.|.+.+.++.
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~ 31 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVL 31 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEE
Confidence 678999999999999988888874
No 179
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=58.83 E-value=90 Score=26.61 Aligned_cols=71 Identities=14% Similarity=0.004 Sum_probs=44.1
Q ss_pred cccCCCcEEEEeeccCCcchH---HhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHH
Q 013570 180 GIDRAVDIAVLEMGMSGKGEI---LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256 (440)
Q Consensus 180 ~~~~~~~~~VlE~g~~~~g~~---~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~ 256 (440)
....++++.++=-++.+.... .-+.-..+|.|+|+|-+. +.+.++|...|.-|.+. ....+.++++-|+.
T Consensus 60 tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~D------Laed~dI~~~~~~L~ea-Ga~~IF~~s~~d~~ 132 (148)
T COG4917 60 TTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKAD------LAEDADISLVKRWLREA-GAEPIFETSAVDNQ 132 (148)
T ss_pred HHhhccceeeeeecccCccccCCcccccccccceEEEEeccc------ccchHhHHHHHHHHHHc-CCcceEEEeccCcc
Confidence 345667776665555443100 011223588999999986 33468888888877764 34557888887764
Q ss_pred H
Q 013570 257 V 257 (440)
Q Consensus 257 ~ 257 (440)
.
T Consensus 133 g 133 (148)
T COG4917 133 G 133 (148)
T ss_pred c
Confidence 3
No 180
>PRK09453 phosphodiesterase; Provisional
Probab=57.74 E-value=42 Score=29.93 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=46.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcH----HHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER----ESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~----~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
+.+|-|+. -|..+++++++.+++.. -..++++|+..+.|.+.. ....++.+.+.+.+...+++.|+.-
T Consensus 3 i~viSD~H-g~~~~~~~~l~~~~~~~--~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD 74 (182)
T PRK09453 3 LMFASDTH-GSLPATEKALELFAQSG--ADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCD 74 (182)
T ss_pred EEEEEecc-CCHHHHHHHHHHHHhcC--CCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCc
Confidence 46889966 46788999999886643 468899999776554311 0124567777766556777888753
No 181
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=57.59 E-value=8.6 Score=34.40 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEecCc
Q 013570 141 VGKSTTKSMIALALESLGVNVFQSYGN 167 (440)
Q Consensus 141 nGKTTT~~ml~~iL~~~g~~~~~t~g~ 167 (440)
.||||.+.+|..-|+..|+++..+...
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~~~~~~~ 33 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKVIITFPP 33 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHcCCcccccCCC
Confidence 599999999999999999886444433
No 182
>PRK07933 thymidylate kinase; Validated
Probab=56.99 E-value=18 Score=33.41 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=25.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeEEe
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t 164 (440)
+|+|-|. .||||.+.+|...|++.|+++..+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4666663 689999999999999999888644
No 183
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=56.86 E-value=33 Score=30.84 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhhhhhh
Q 013570 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKWR 436 (440)
Q Consensus 366 yahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~~~~ 436 (440)
+..+|+.++.+.+.+++.+| +-.+ .|. .|..+++...++.+.+++.+.| ++++|=.++.+..|-
T Consensus 54 lG~~~~v~~~~~~~l~~~yP-~l~i--~g~---~g~f~~~~~~~i~~~I~~s~~d-il~VglG~PkQE~~~ 117 (177)
T TIGR00696 54 YGGKPDVLQQLKVKLIKEYP-KLKI--VGA---FGPLEPEERKAALAKIARSGAG-IVFVGLGCPKQEIWM 117 (177)
T ss_pred ECCCHHHHHHHHHHHHHHCC-CCEE--EEE---CCCCChHHHHHHHHHHHHcCCC-EEEEEcCCcHhHHHH
Confidence 35678888888888877662 2222 233 2334444456677778877766 455576666666663
No 184
>PHA02239 putative protein phosphatase
Probab=56.63 E-value=80 Score=29.72 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=48.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
+.+|-|-. -+.+.++++++.+.....+...++++|+.-+.|..+.+....+.+.+.. ....+++.|++-.
T Consensus 3 ~~~IsDIH-G~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~-~~~~~~l~GNHE~ 72 (235)
T PHA02239 3 IYVVPDIH-GEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSN-DDNVVTLLGNHDD 72 (235)
T ss_pred EEEEECCC-CCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhc-CCCeEEEECCcHH
Confidence 35788843 4678888888888543212467999999999998877655555554332 3567888898764
No 185
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=56.53 E-value=14 Score=38.35 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=49.4
Q ss_pred EEEeCC-CChHHHHHHHHHHHHhCCCCeEEe-cCc-CCCC------cchh---------------hHHhcccCCCcEEEE
Q 013570 135 VGVTGS-VGKSTTKSMIALALESLGVNVFQS-YGN-WNNR------VGVA---------------LSLIGIDRAVDIAVL 190 (440)
Q Consensus 135 I~VTGT-nGKTTT~~ml~~iL~~~g~~~~~t-~g~-~n~~------~g~p---------------~~l~~~~~~~~~~Vl 190 (440)
|+=|+| .|||+++..|...|++.|++|... .|- +... .|.| ..+..+.++.|++|+
T Consensus 4 I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~~~~~~g~~~~~ld~~~~~~~~i~~~~~~~~~~~D~viV 83 (449)
T TIGR00379 4 IAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMFHTQATGRPSRNLDSFFMSEAQIQECFHRHSKGTDYSII 83 (449)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHHHHHHhCCchhhCCcccCCHHHHHHHHHHhcccCCEEEE
Confidence 333555 799999999999999999987421 121 0000 0111 011123567899999
Q ss_pred eeccCCc---------chHHhhccccCCcEEEEcCCC
Q 013570 191 EMGMSGK---------GEILELARMARPEIRVVLNVG 218 (440)
Q Consensus 191 E~g~~~~---------g~~~~~~~~~~p~vaviTNi~ 218 (440)
|-.++-. +...++.+.+..-+.++++..
T Consensus 84 EGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 84 EGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred ecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 9642111 223455555677888888865
No 186
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=56.30 E-value=40 Score=27.10 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=45.6
Q ss_pred HHHHHhCCeecccCC-----CceEEee-------CCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCC
Q 013570 31 EIAESVNGKILKWGP-----PGIICTD-------TRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN 98 (440)
Q Consensus 31 ~l~~~~~~~~~~~~~-----i~~i~~d-------sr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~ 98 (440)
||++.++|+++...+ +..+.+= ...+++ |++.|. .|.+ .+-+..|++ +|++++|.......
T Consensus 1 ~I~~~L~~~~l~g~~~~~~~~~~v~v~a~~~~~~~~~~~~--~~lvIt-~gdR---~di~~~a~~-~~i~~iIltg~~~~ 73 (105)
T PF07085_consen 1 DIAKTLDGEVLNGGEELDRRVGKVVVGAMSLSDFLEYLKP--GDLVIT-PGDR---EDIQLAAIE-AGIACIILTGGLEP 73 (105)
T ss_dssp HHHHHTT-EEEE--TTS--EESEEEE-SS-HHHHHHCHHT--TEEEEE-ETT----HHHHHHHCC-TTECEEEEETT---
T ss_pred ChHHhcCCEEEECCcccceEEeeEEEEECCHHHHHhhcCC--CeEEEE-eCCc---HHHHHHHHH-hCCCEEEEeCCCCC
Confidence 588999998775322 4444322 234567 899875 5666 456777888 99888877653321
Q ss_pred ----------CCceEEEEcCCCCccHHHHHHHHH
Q 013570 99 ----------WDKGFVQVEGNGNVNTLNSLVNMA 122 (440)
Q Consensus 99 ----------~~~~~i~V~~~~~~d~~~al~~la 122 (440)
.++|++.++ .|+..+...+.
T Consensus 74 ~~~v~~la~~~~i~vi~t~----~dtf~ta~~i~ 103 (105)
T PF07085_consen 74 SEEVLELAKELGIPVISTP----YDTFETARLIY 103 (105)
T ss_dssp -HHHHHHHHHHT-EEEE-S----S-HHHHHHHHH
T ss_pred CHHHHHHHHHCCCEEEEEC----CCHHHHHHHHh
Confidence 167888777 25666555543
No 187
>PTZ00301 uridine kinase; Provisional
Probab=56.23 E-value=13 Score=34.42 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=29.9
Q ss_pred cCCCHHHHHHHhcC-CCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhc
Q 013570 329 FGVSLAQVGISLSN-FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382 (440)
Q Consensus 329 lg~~~~~i~~~L~~-~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~ 382 (440)
-|.+++.+.+...+ ..+...++- .......-+|+..++.|+.++..+...++.
T Consensus 152 rG~~~e~v~~~~~~~v~~~~~~~I-~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~ 205 (210)
T PTZ00301 152 RGRTFESVIEQYEATVRPMYYAYV-EPSKVYADIIVPSWKDNSVAVGVLRAKLNH 205 (210)
T ss_pred cCCCHHHHHHHHHHhhcccHHHHc-CccccCCcEEEcCCCcchHHHHHHHHHHHH
Confidence 47888887775544 344333321 111123334445488999988877666654
No 188
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=56.14 E-value=17 Score=34.67 Aligned_cols=30 Identities=40% Similarity=0.495 Sum_probs=23.1
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 134 LVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 134 vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+|.|. |=.|||||+.=|+-.|...|++|+.
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~ 34 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGL 34 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 45555 7789999999999999899999853
No 189
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=55.91 E-value=12 Score=33.28 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=21.0
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL 154 (440)
.|+|+|+| |.||||.+.-|+.++
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~f 32 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIF 32 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHh
Confidence 57899998 799999999999999
No 190
>PRK11519 tyrosine kinase; Provisional
Probab=54.71 E-value=31 Score=38.24 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=36.4
Q ss_pred HHHHHHHHHHH--hhcCCCCCcEEEEeC---CCChHHHHHHHHHHHHhCCCCeEE
Q 013570 114 TLNSLVNMACY--ARNSRFSGVLVGVTG---SVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 114 ~~~al~~la~~--~~~p~~~~~vI~VTG---TnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
..+++..|-.. +..+..+.++|.||+ -.||||++.-|+..|...|.+|..
T Consensus 506 ~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLl 560 (719)
T PRK11519 506 AIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLL 560 (719)
T ss_pred HHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 34556555541 222345678999998 569999999999999888988853
No 191
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=54.71 E-value=18 Score=39.05 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+++|+|+| -.||||..+-|-..|++.|++|.
T Consensus 8 ~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVa 42 (597)
T PRK14491 8 LSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLA 42 (597)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEE
Confidence 4478999999 67999999999999988999874
No 192
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=54.69 E-value=11 Score=34.15 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.1
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 013570 134 LVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (440)
+|||+|- .||||++..|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4788875 58999999999998
No 193
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=54.57 E-value=11 Score=36.54 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=20.8
Q ss_pred EEEEeCCC--ChHHHHHHHHHHHHhCCC
Q 013570 134 LVGVTGSV--GKSTTKSMIALALESLGV 159 (440)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL~~~g~ 159 (440)
+|||+|.+ ||||.+.+|..+|...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~ 28 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLV 28 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCce
Confidence 47888875 799999999999954443
No 194
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=54.23 E-value=56 Score=29.68 Aligned_cols=57 Identities=9% Similarity=0.019 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCc
Q 013570 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428 (440)
Q Consensus 367 ahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~ 428 (440)
-.+|..+..+.+.+++.. -.-.++-||. . ....++-+.+.+.+...+-.+++.+-+.
T Consensus 119 ~~d~~~i~~~~~~lkk~~-I~v~vI~~G~---~-~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 119 EEDEKDLVKLAKRLKKNN-VSVDIINFGE---I-DDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred cCCHHHHHHHHHHHHHcC-CeEEEEEeCC---C-CCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 456777777777776532 1122333444 2 2334455556665543323455555443
No 195
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=54.18 E-value=10 Score=34.50 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.0
Q ss_pred EEEEeC--CCChHHHHHHHHHHH
Q 013570 134 LVGVTG--SVGKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTG--TnGKTTT~~ml~~iL 154 (440)
+|+|+| ..||||.+..|...|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 588888 469999999999887
No 196
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=54.02 E-value=71 Score=35.23 Aligned_cols=81 Identities=22% Similarity=0.216 Sum_probs=47.7
Q ss_pred eCC-CChHHHHHHHHHHHHhCCCCeEEec--Cc--CCC----------Ccchhh-----HHhcccCCCcEEEEeeccCCc
Q 013570 138 TGS-VGKSTTKSMIALALESLGVNVFQSY--GN--WNN----------RVGVAL-----SLIGIDRAVDIAVLEMGMSGK 197 (440)
Q Consensus 138 TGT-nGKTTT~~ml~~iL~~~g~~~~~t~--g~--~n~----------~~g~p~-----~l~~~~~~~~~~VlE~g~~~~ 197 (440)
|+| .|||+++.-|.+.|++.|+++.... +. +.. ....-+ .+..+..++|+.++|-+....
T Consensus 10 T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~~~~~~~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~ 89 (684)
T PRK05632 10 TGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEALLASGQLDELLEEIVARYHALAKDCDVVLVEGLDPTR 89 (684)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHHHhccCChHHHHHHHHHHHHhccCCCEEEEeCcCCCC
Confidence 444 7999999999999999999874321 11 100 000000 111346789999999874322
Q ss_pred ch------HHhhccccCCcEEEEcCCC
Q 013570 198 GE------ILELARMARPEIRVVLNVG 218 (440)
Q Consensus 198 g~------~~~~~~~~~p~vaviTNi~ 218 (440)
+. -.++.+.+...+.++++..
T Consensus 90 ~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 90 KHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred cCcccCchHHHHHHHhCCCEEEEECCC
Confidence 11 1233444567788888774
No 197
>PRK00698 tmk thymidylate kinase; Validated
Probab=53.61 E-value=25 Score=31.62 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=25.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.++|+|.|- .||||.+..|+.-|...|..+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~ 35 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVV 35 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCcee
Confidence 467888885 6899999999999977776654
No 198
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=52.80 E-value=44 Score=31.65 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=42.6
Q ss_pred cCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcH---HHHHHHHHHHHHc--CCCEEEEEcCch
Q 013570 365 AYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER---ESHEKILSYCCDA--CIDLIGLVGDRV 429 (440)
Q Consensus 365 syahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~---~~~~~l~~~~~~~--~~d~vi~~G~~~ 429 (440)
.|..++.-++++++.+++..+....+++.|+|.+.|.... ...+.+.+.+.+. ++..+++.|++-
T Consensus 28 ~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~i~GNHD 97 (262)
T cd07395 28 EWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLDPDIPLVCVCGNHD 97 (262)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhccCCCcEEEeCCCCC
Confidence 3444566789999999876434567888899998776542 2233445555543 467888888763
No 199
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=52.50 E-value=14 Score=38.69 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=21.8
Q ss_pred eCC-CChHHHHHHHHHHHHhCCCCeE
Q 013570 138 TGS-VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 138 TGT-nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|+| .|||.++..|...|++.|+++.
T Consensus 6 T~t~vGKT~v~~~L~~~l~~~G~~v~ 31 (475)
T TIGR00313 6 TTSSAGKSTLTAGLCRILARRGYRVA 31 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 444 7999999999999999999874
No 200
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=52.18 E-value=12 Score=34.28 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.5
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHH
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~ 155 (440)
.-+|||.| ..||||.+..+..+|.
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~ 29 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFP 29 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHcc
Confidence 34799998 4699999999999994
No 201
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=51.72 E-value=46 Score=30.08 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=30.4
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeEEecC
Q 013570 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYG 166 (440)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t~g 166 (440)
..+..+|-.||= .||||++..++..|.+.|+.+...-|
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG 59 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG 59 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 344568999985 58999999999999999998864333
No 202
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=51.32 E-value=49 Score=29.42 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhhhhh
Q 013570 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKW 435 (440)
Q Consensus 367 ahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~~~ 435 (440)
..+|+.++.+.+.+++.++ .+-|.|. ..|..+++..+++.+.+++.+.|.| ++|-.++.+..|
T Consensus 55 G~~~~~~~~~~~~l~~~yP---~l~ivg~--~~g~f~~~~~~~i~~~I~~~~pdiv-~vglG~PkQE~~ 117 (172)
T PF03808_consen 55 GGSEEVLEKAAANLRRRYP---GLRIVGY--HHGYFDEEEEEAIINRINASGPDIV-FVGLGAPKQERW 117 (172)
T ss_pred eCCHHHHHHHHHHHHHHCC---CeEEEEe--cCCCCChhhHHHHHHHHHHcCCCEE-EEECCCCHHHHH
Confidence 3467777777777776552 2333332 1333355555667777777766544 345555555555
No 203
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=51.16 E-value=48 Score=29.78 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=31.3
Q ss_pred cCCCCCCCceeEEeecCCe-EEEEecCCC-CHHHHHHHHHHHhcccCC--CcEEEEEcC
Q 013570 341 SNFSPVQMRSELLVSRSGI-KIVNDAYNA-NPISTRAAIDLLKDIACN--GKRVVILGD 395 (440)
Q Consensus 341 ~~~~~~~gR~e~~~~~~~~-~ii~Dsyah-np~s~~~al~~l~~~~~~--~r~i~VlG~ 395 (440)
.+++|.+||++++-..... -+-.+ -++ --.+++.||+.|.+-+.. =-+|.|+|+
T Consensus 61 ~k~RPL~gRiNiVLSR~~~~~~~~t-~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG 118 (190)
T KOG1324|consen 61 EKFRPLPGRINVVLSRSLKEDFAPT-ENVFLSSSLESALDLLEEPPSSNSVEMVFVIGG 118 (190)
T ss_pred cccCCCCCceEEEEecccCcCcCCc-cCEEEeccHHHHHHhhcCCccccceeEEEEEcC
Confidence 5689999999998542111 00001 011 136889999998764311 136777776
No 204
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=50.90 E-value=11 Score=32.96 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=16.6
Q ss_pred EEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 135 VGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|+|||+ .||||++.-|+.. |+.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~----g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR----GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH----T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc----CCeEE
Confidence 788986 6899999888866 66554
No 205
>PLN02796 D-glycerate 3-kinase
Probab=50.33 E-value=18 Score=36.16 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHh---hcCC-CCCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCe
Q 013570 113 NTLNSLVNMACYA---RNSR-FSGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 113 d~~~al~~la~~~---~~p~-~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~ 161 (440)
....++..+.... +... .+.-+|||+|.+ ||||++..|..+|...+.++
T Consensus 77 ~~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~ 131 (347)
T PLN02796 77 VYLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRA 131 (347)
T ss_pred cHHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCce
Confidence 5556666666432 1101 234579999975 79999999999996555444
No 206
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=50.25 E-value=16 Score=33.80 Aligned_cols=29 Identities=38% Similarity=0.464 Sum_probs=18.6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHH-hCCCCe
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALE-SLGVNV 161 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~-~~g~~~ 161 (440)
.-|+|-||| |||+|+..|-.-+. ..+.++
T Consensus 26 ~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ 55 (229)
T PF01935_consen 26 IAIFGTTGS-GKSNTVKVLLEELLKKKGAKV 55 (229)
T ss_pred EEEECCCCC-CHHHHHHHHHHHHHhcCCCCE
Confidence 456777775 89988866555553 455444
No 207
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=50.05 E-value=16 Score=33.37 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=20.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+|||||. .||||.+.++.. .|+.++
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~vi 29 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLIV 29 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 57999997 589999998874 476654
No 208
>PRK07429 phosphoribulokinase; Provisional
Probab=49.84 E-value=20 Score=35.70 Aligned_cols=28 Identities=36% Similarity=0.324 Sum_probs=22.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhCC
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALESLG 158 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g 158 (440)
+..+|||+|. .||||++..|..+|...+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~ 36 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEEL 36 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCc
Confidence 3468999995 589999999999995443
No 209
>PRK06547 hypothetical protein; Provisional
Probab=49.44 E-value=33 Score=30.63 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=20.1
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
....+|+|+|.. ||||++..|+..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346689998875 6999999998876
No 210
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=49.19 E-value=19 Score=32.87 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=21.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~ 155 (440)
+..+|+|+|. .||||.+..|...|.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3568999996 589999999999984
No 211
>PRK14709 hypothetical protein; Provisional
Probab=49.07 E-value=32 Score=36.01 Aligned_cols=43 Identities=26% Similarity=0.210 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHhhcCCCCC-cEEEE--eCCCChHHHHHHHHHHHH
Q 013570 113 NTLNSLVNMACYARNSRFSG-VLVGV--TGSVGKSTTKSMIALALE 155 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~-~vI~V--TGTnGKTTT~~ml~~iL~ 155 (440)
+....|+++..+.-.+..+. ..+-+ +|.|||||...+|..+|-
T Consensus 185 e~~~~lq~~lGy~L~g~~~~q~~~~l~G~G~NGKSt~~~~i~~llG 230 (469)
T PRK14709 185 ELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGILG 230 (469)
T ss_pred HHHHHHHHHhhHhhcCCCccceEEEEECCCCCcHHHHHHHHHHHHh
Confidence 46666666544211112222 22333 588999999999999993
No 212
>PRK12377 putative replication protein; Provisional
Probab=48.73 E-value=38 Score=32.23 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=22.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.-+.++|. .|||..+..|...|...|+.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~ 133 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVI 133 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 34555553 4999999999998878888774
No 213
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=48.07 E-value=20 Score=31.93 Aligned_cols=25 Identities=40% Similarity=0.755 Sum_probs=20.0
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|||. .||||.+.++.. .|+.+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~i 27 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPVI 27 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCEE
Confidence 4899986 689999999887 377664
No 214
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=47.95 E-value=12 Score=38.69 Aligned_cols=80 Identities=24% Similarity=0.264 Sum_probs=43.6
Q ss_pred CcccchHHHHhcCCCeEEEeccccCCCCceEEEEcCCCCccHHHHHHHHHH-HhhcCCC-CCcEEEEeCCC--ChHHHHH
Q 013570 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC-YARNSRF-SGVLVGVTGSV--GKSTTKS 148 (440)
Q Consensus 73 dg~~~i~~A~~~~Ga~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~-~~~~p~~-~~~vI~VTGTn--GKTTT~~ 148 (440)
+|..+|.+.+- -|+...+ +..|...+.+|-.|.+-+.++.+-++.=+- .|+-|-. +.+|+||-|+| ||||+..
T Consensus 42 ~gkpvIsE~lC-iGCGICv--kkCPF~AI~IvnLP~eLe~e~vHRYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalk 118 (591)
T COG1245 42 TGKPVISEELC-IGCGICV--KKCPFDAISIVNLPEELEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALK 118 (591)
T ss_pred CCCceeEhhhh-ccchhhh--ccCCcceEEEecCchhhcccceeeccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHH
Confidence 56778888888 7843322 222322344454441111111111111111 2444443 36799999999 5999988
Q ss_pred HHHHHHH
Q 013570 149 MIALALE 155 (440)
Q Consensus 149 ml~~iL~ 155 (440)
+|+--|.
T Consensus 119 ILaGel~ 125 (591)
T COG1245 119 ILAGELK 125 (591)
T ss_pred HHhCccc
Confidence 8887773
No 215
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.07 E-value=99 Score=34.47 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=22.2
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH-hCCC-Ce
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE-SLGV-NV 161 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~-~~g~-~~ 161 (440)
..+|++.|.| |||||...|+..+. ..|. ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV 218 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQL 218 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeE
Confidence 4577887776 69999999998773 4553 54
No 216
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=46.92 E-value=16 Score=32.87 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=19.8
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|||+ .||||++.++.... ++.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~---~~~~i 28 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY---HFPVI 28 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---CCeEE
Confidence 4899997 68999999888754 45554
No 217
>PLN02422 dephospho-CoA kinase
Probab=46.88 E-value=20 Score=33.84 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=20.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|||||. .||||++.++.. .|+.+.
T Consensus 2 ~~igltG~igsGKstv~~~l~~----~g~~~i 29 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS----SGIPVV 29 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 57999996 689999998873 477664
No 218
>PRK13973 thymidylate kinase; Provisional
Probab=46.29 E-value=24 Score=32.49 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=26.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeEEe
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t 164 (440)
+.|.+-|. .||||.+.+|+.-|++.|+++..+
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56777765 589999999999999999988654
No 219
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=46.13 E-value=25 Score=28.44 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=31.2
Q ss_pred EeCCCChHHHHHHHHHHHHhC-CCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeecc
Q 013570 137 VTGSVGKSTTKSMIALALESL-GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (440)
Q Consensus 137 VTGTnGKTTT~~ml~~iL~~~-g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~ 194 (440)
--|-.||||++.-|+..|.+. |.++...--+ .+ .+.++.|+-++.
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d--~~-----------~~~D~IIiDtpp 52 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLD--LQ-----------FGDDYVVVDLGR 52 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC--CC-----------CCCCEEEEeCCC
Confidence 346779999999999999777 8887532111 11 122899999874
No 220
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=45.83 E-value=19 Score=29.42 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=12.6
Q ss_pred CChHHHHHHHHHHH
Q 013570 141 VGKSTTKSMIALAL 154 (440)
Q Consensus 141 nGKTTT~~ml~~iL 154 (440)
.||||++..|...+
T Consensus 9 sGKtTia~~L~~~~ 22 (129)
T PF13238_consen 9 SGKTTIAKELAERL 22 (129)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 49999999999986
No 221
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=45.66 E-value=23 Score=26.13 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 013570 134 LVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (440)
+|+|+|. .||||.+..|...|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 3677775 58999999999998
No 222
>PRK13768 GTPase; Provisional
Probab=45.61 E-value=30 Score=32.90 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=22.9
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|.|+ |-.||||++.-++..|...|.++.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~ 34 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVA 34 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceE
Confidence 45555 457899999999999988888874
No 223
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=45.43 E-value=27 Score=30.25 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=22.1
Q ss_pred EEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 135 VGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|++.|. .||||+...+...|...|.++.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ 31 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVA 31 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 555544 5899999999999988888763
No 224
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=44.87 E-value=33 Score=33.71 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=23.9
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|-++ |-.||||++..++.-+.+.|.+|.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtL 33 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTL 33 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCee
Confidence 344444 789999999999999989999884
No 225
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.67 E-value=42 Score=37.33 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=28.3
Q ss_pred CCCCcEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
....++|+|| |-.||||++.-|+..|...|.+|.
T Consensus 543 ~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvL 579 (754)
T TIGR01005 543 VAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRAL 579 (754)
T ss_pred CCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEE
Confidence 4556789998 457899999999999988888875
No 226
>PRK05569 flavodoxin; Provisional
Probab=44.67 E-value=70 Score=26.99 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCC
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d 420 (440)
|..++..++.+......+|.+++||. .|.......+.+.+.+.+.++.
T Consensus 66 ~~~~~~~~~~l~~~~~~~K~v~~f~t---~g~~~~~~~~~~~~~l~~~g~~ 113 (141)
T PRK05569 66 QEEMAPFLDQFKLTPNENKKCILFGS---YGWDNGEFMKLWKDRMKDYGFN 113 (141)
T ss_pred hHHHHHHHHHhhccCcCCCEEEEEeC---CCCCCCcHHHHHHHHHHHCCCe
Confidence 36899999988765446899999998 4444333455666667665543
No 227
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=44.07 E-value=22 Score=32.69 Aligned_cols=26 Identities=50% Similarity=0.777 Sum_probs=20.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+|||||. .||||.+.++.. .|+.+.
T Consensus 6 ~~igitG~igsGKSt~~~~l~~----~g~~v~ 33 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE----MGCELF 33 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 47999997 589999988775 466654
No 228
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=43.85 E-value=1.5e+02 Score=27.76 Aligned_cols=69 Identities=9% Similarity=0.169 Sum_probs=49.2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 358 ~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.+.+|-|.. .|...++++++.+++.. -..+++.|++...|...++ ..++.+.+.+.+...+++.|+.-.
T Consensus 6 kIl~iSDiH-gn~~~le~l~~~~~~~~--~D~vv~~GDl~~~g~~~~~-~~~~l~~l~~l~~pv~~V~GNhD~ 74 (224)
T cd07388 6 YVLATSNPK-GDLEALEKLVGLAPETG--ADAIVLIGNLLPKAAKSED-YAAFFRILGEAHLPTFYVPGPQDA 74 (224)
T ss_pred EEEEEEecC-CCHHHHHHHHHHHhhcC--CCEEEECCCCCCCCCCHHH-HHHHHHHHHhcCCceEEEcCCCCh
Confidence 467899954 58999999999886543 4689999998877633232 345666666666678888897553
No 229
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=43.80 E-value=46 Score=28.41 Aligned_cols=38 Identities=21% Similarity=0.079 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHH
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
++.+.-..|++.... ..+|.+.|. .||||.+..+...|
T Consensus 7 ~t~~l~~~l~~~l~~----~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDF----GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCC----CCEEEEEcCCCCCHHHHHHHHHHHc
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=43.72 E-value=23 Score=33.81 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 114 TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 114 ~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++.+..+..+... ..+.-+.|-+|| |||+.+..++..+ |.++.
T Consensus 7 ~~~l~~~~l~~l~~-g~~vLL~G~~Gt-GKT~lA~~la~~l---g~~~~ 50 (262)
T TIGR02640 7 VKRVTSRALRYLKS-GYPVHLRGPAGT-GKTTLAMHVARKR---DRPVM 50 (262)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEcCCCC-CHHHHHHHHHHHh---CCCEE
Confidence 45555555555554 444556677775 9999999999866 55543
No 231
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=43.69 E-value=19 Score=32.92 Aligned_cols=19 Identities=42% Similarity=0.758 Sum_probs=15.2
Q ss_pred EEEEeCCC--ChHHHHHHHHH
Q 013570 134 LVGVTGSV--GKSTTKSMIAL 152 (440)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~ 152 (440)
+|||||.+ ||||++.++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 48999985 79999887764
No 232
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=43.67 E-value=1.1e+02 Score=29.39 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=46.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 360 ~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.+|-|. =.+.++++++|+.+...+ ....++.+|++...|..+.+ +.+.+.+.+...+.+.|++-.
T Consensus 2 yvIGDI-HG~~~~L~~LL~~i~~~~-~~D~Li~lGDlVdRGp~s~e----vl~~l~~l~~~v~~VlGNHD~ 66 (257)
T cd07422 2 YAIGDI-QGCYDELQRLLEKINFDP-AKDRLWLVGDLVNRGPDSLE----TLRFVKSLGDSAKTVLGNHDL 66 (257)
T ss_pred EEEECC-CCCHHHHHHHHHhcCCCC-CCCEEEEecCcCCCCcCHHH----HHHHHHhcCCCeEEEcCCchH
Confidence 467784 348999999999875332 45678889999999988754 555555554456788888654
No 233
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=43.62 E-value=26 Score=31.85 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=21.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|||. .||||++.++...+ |+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~i 30 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPIL 30 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeEe
Confidence 47999996 68999999988765 66554
No 234
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=43.61 E-value=48 Score=32.34 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.4
Q ss_pred eCCCChHHHHHHHHHHHH
Q 013570 138 TGSVGKSTTKSMIALALE 155 (440)
Q Consensus 138 TGTnGKTTT~~ml~~iL~ 155 (440)
.|.|||||...+|..++-
T Consensus 84 ~g~nGKStl~~~l~~l~G 101 (304)
T TIGR01613 84 NGGNGKSTFQNLLSNLLG 101 (304)
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 589999999999999993
No 235
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=43.54 E-value=76 Score=31.54 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=29.3
Q ss_pred CCCCcEEEE----eCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+.|||.| .|=+|||-++-.|+..|++.|++++
T Consensus 44 ~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~g 81 (336)
T COG1663 44 RAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVG 81 (336)
T ss_pred cCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeE
Confidence 445788876 5999999999999999999999984
No 236
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=43.12 E-value=33 Score=35.42 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCe
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~ 161 (440)
+.-+|||+|-+ ||||.+..|..+|+..+.++
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~v 243 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKS 243 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCce
Confidence 34689999975 79999999999996656554
No 237
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=43.07 E-value=26 Score=32.47 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
..+|+|.|+ .||||.+++|+.=|
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 468999997 68999999999988
No 238
>PRK06703 flavodoxin; Provisional
Probab=42.94 E-value=1.1e+02 Score=26.13 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhc----HHHHHHHHHHHHHcCCCE
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTE----RESHEKILSYCCDACIDL 421 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~----~~~~~~l~~~~~~~~~d~ 421 (440)
|..++..++.+++....++.++|||. |+.. ....+.+.+.+.+.++..
T Consensus 65 p~~~~~f~~~l~~~~l~~k~~~vfg~----g~~~y~~~~~a~~~l~~~l~~~G~~~ 116 (151)
T PRK06703 65 PYEAEDFHEDLENIDLSGKKVAVFGS----GDTAYPLFCEAVTIFEERLVERGAEL 116 (151)
T ss_pred cHHHHHHHHHHhcCCCCCCEEEEEcc----CCCChHHHHHHHHHHHHHHHHCCCEE
Confidence 77899999988754435788999985 3333 344455777777776543
No 239
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=42.75 E-value=23 Score=31.27 Aligned_cols=20 Identities=45% Similarity=0.684 Sum_probs=16.3
Q ss_pred EEEEeCCCChHHHHHHHHHHH
Q 013570 134 LVGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL 154 (440)
++||.|| ||||+..+|.+-|
T Consensus 17 vmGvsGs-GKSTigk~L~~~l 36 (191)
T KOG3354|consen 17 VMGVSGS-GKSTIGKALSEEL 36 (191)
T ss_pred EEecCCC-ChhhHHHHHHHHh
Confidence 4556664 8999999999999
No 240
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=42.70 E-value=36 Score=35.73 Aligned_cols=33 Identities=36% Similarity=0.377 Sum_probs=28.2
Q ss_pred CCCcEEEEeC------CCChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTG------TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+.++|.||. --|||||+.=|++.|.+.|.++.
T Consensus 36 ~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l 74 (524)
T cd00477 36 PDGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAI 74 (524)
T ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence 3468999999 45899999999999988898864
No 241
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=42.57 E-value=28 Score=30.38 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 139 GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 139 GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+-.||||++.-|...|++.|++|+
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~ 30 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVG 30 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEE
Confidence 347999999999999999998885
No 242
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=42.14 E-value=1.4e+02 Score=28.90 Aligned_cols=66 Identities=11% Similarity=0.182 Sum_probs=46.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
..+|-| -=.|.++++++|+.+.-.+ ....++++|++.+.|..+.+ +.+.+.+.+...+++.|++-.
T Consensus 3 ~~vIGD-IHG~~~~l~~ll~~~~~~~-~~D~li~lGDlVdrGp~s~~----vl~~l~~l~~~~~~VlGNHD~ 68 (275)
T PRK00166 3 TYAIGD-IQGCYDELQRLLEKIDFDP-AKDTLWLVGDLVNRGPDSLE----VLRFVKSLGDSAVTVLGNHDL 68 (275)
T ss_pred EEEEEc-cCCCHHHHHHHHHhcCCCC-CCCEEEEeCCccCCCcCHHH----HHHHHHhcCCCeEEEecChhH
Confidence 457888 4458999999998874222 35679999999999987754 445555544457788898664
No 243
>PRK04040 adenylate kinase; Provisional
Probab=41.99 E-value=27 Score=31.61 Aligned_cols=29 Identities=31% Similarity=0.252 Sum_probs=22.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
.++|+|||. .||||.+..+.+-| ..++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l-~~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL-KEDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh-ccCCeE
Confidence 357888886 58999999999988 334444
No 244
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=41.83 E-value=38 Score=34.21 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++..+|+|+|. .||||....|...|+.. ++|.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~ 36 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVG 36 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEE
Confidence 34678999994 58999999999999777 7774
No 245
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=41.82 E-value=15 Score=32.05 Aligned_cols=18 Identities=56% Similarity=0.700 Sum_probs=15.5
Q ss_pred EEeCCCChHHHHHHHHHHH
Q 013570 136 GVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 136 ~VTGTnGKTTT~~ml~~iL 154 (440)
||.| +||||+..+|++-|
T Consensus 2 GVsG-~GKStvg~~lA~~l 19 (161)
T COG3265 2 GVSG-SGKSTVGSALAERL 19 (161)
T ss_pred CCCc-cCHHHHHHHHHHHc
Confidence 5666 49999999999999
No 246
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=41.77 E-value=68 Score=30.58 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChh-cHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGST-ERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 369 np~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~-~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
+++.++++++.+++.. -..+++.|++.+.|.. .++....+.+.+.+.++...++.|++-
T Consensus 25 ~~~~l~~~i~~i~~~~--~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD 84 (267)
T cd07396 25 SLEKLEEAVEEWNRES--LDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLGNHD 84 (267)
T ss_pred hHHHHHHHHHHHHcCC--CCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecCccc
Confidence 5678888888887654 3578888998877753 335556677777777788899999754
No 247
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.71 E-value=48 Score=31.40 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=32.2
Q ss_pred CCccHHHHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHHHh
Q 013570 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALES 156 (440)
Q Consensus 110 ~~~d~~~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~ 156 (440)
||.|+-..|+.++. +-++|-+-++|- .||||....|++.|-.
T Consensus 31 GNe~tv~rl~via~-----~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 31 GNEDTVERLSVIAK-----EGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCHHHHHHHHHHHH-----cCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 45588888887775 445777888875 5899999999998843
No 248
>PRK05541 adenylylsulfate kinase; Provisional
Probab=41.45 E-value=59 Score=28.61 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
.+..+|.++|- .||||.+..|+.-|...+..+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 44568888886 579999999999996555444
No 249
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=41.43 E-value=26 Score=32.32 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=21.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+||+||. .||||++.++..-| |..+.
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~l---g~~vi 35 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKL---NLNVV 35 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHc---CCeEE
Confidence 57999996 78999999988755 55553
No 250
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=41.16 E-value=45 Score=29.24 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=22.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++.++|- .||||++..++..|.+.|.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~ 32 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVL 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4555553 5899999999999878887774
No 251
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=41.08 E-value=1.5e+02 Score=28.05 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCC--CC-----ceeEEeecCCeEEEEecCCCCHHHHHHHHHHH
Q 013570 319 ACAAAAVATLFGVSLAQVGISLSNFSPV--QM-----RSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380 (440)
Q Consensus 319 alaAia~~~~lg~~~~~i~~~L~~~~~~--~g-----R~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l 380 (440)
+..|+..|...++|.+.|..+|++-.+. .. ++|-+. .+|+.||+++.-.|+.-..+-++.+
T Consensus 49 L~~ai~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~g-P~GvaiiVe~lTDN~nRt~~~ir~~ 116 (238)
T TIGR01033 49 LRTAIEKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGYA-PGGVAIIVECLTDNKNRTASEVRSA 116 (238)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEEc-CCceEEEEEEecCCHHhHHHHHHHH
Confidence 5567888899999999999999887652 22 333333 4789999999999988777777765
No 252
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=40.72 E-value=36 Score=36.04 Aligned_cols=35 Identities=37% Similarity=0.420 Sum_probs=26.6
Q ss_pred CCCCcEEEEeCCC------ChHHHHHHHHHHHHhCCCCeEE
Q 013570 129 RFSGVLVGVTGSV------GKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 129 ~~~~~vI~VTGTn------GKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+.+.+.|-||+.+ |||||+-=|.+.|...|+++..
T Consensus 51 ~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~ 91 (557)
T PF01268_consen 51 KPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIA 91 (557)
T ss_dssp S---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEE
T ss_pred cCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEE
Confidence 4467899999876 9999999999999999998753
No 253
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=40.64 E-value=35 Score=38.51 Aligned_cols=30 Identities=37% Similarity=0.643 Sum_probs=25.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
-+.|.-|| |||||...|-.+|-..|.+|..
T Consensus 689 LI~GMPGT-GKTTtI~~LIkiL~~~gkkVLL 718 (1100)
T KOG1805|consen 689 LILGMPGT-GKTTTISLLIKILVALGKKVLL 718 (1100)
T ss_pred eeecCCCC-CchhhHHHHHHHHHHcCCeEEE
Confidence 47888887 9999998888888899999853
No 254
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=40.41 E-value=3.4e+02 Score=26.04 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=51.0
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 357 ~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.++.++-| --.+.+++.++++..... ....++.+|++.+.|..+.+...-+...-..+.-..+++-|++..
T Consensus 28 ~~i~vvGD-iHG~~~~l~~ll~~~~~~--~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~ 98 (271)
T smart00156 28 APVTVCGD-IHGQFDDLLRLFDLNGPP--PDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHES 98 (271)
T ss_pred CCEEEEEe-CcCCHHHHHHHHHHcCCC--CCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccH
Confidence 57888889 444899999999877542 456889999999999988776655554433343456678887654
No 255
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=40.35 E-value=33 Score=33.59 Aligned_cols=171 Identities=20% Similarity=0.198 Sum_probs=80.0
Q ss_pred CCEEEEe--cCccC--CcccchHHHHhcCCCeEEEe-ccccCC----------CCceEEEEcCCCCccHHHHHHHHHH-H
Q 013570 61 NQWFFAI--TGQHF--DAHEFISPELYGKGCVGVIG-NQVCNN----------WDKGFVQVEGNGNVNTLNSLVNMAC-Y 124 (440)
Q Consensus 61 g~lFval--~G~~~--dg~~~i~~A~~~~Ga~~vv~-~~~~~~----------~~~~~i~V~~~~~~d~~~al~~la~-~ 124 (440)
..+.+.+ .|-.. +....+.+|++ +|-..+=. .....+ .++.++-|. .+...+ .++. .
T Consensus 34 ~~liiGiA~~GG~lp~~w~~~i~~Ai~-~Gl~IvsGLH~~L~ddpel~~~A~~~g~~i~DvR-----~p~~~~-~~~~g~ 106 (301)
T PF07755_consen 34 DTLIIGIAPAGGRLPPSWRPVILEAIE-AGLDIVSGLHDFLSDDPELAAAAKKNGVRIIDVR-----KPPKDL-PVASGR 106 (301)
T ss_dssp SEEEE---STTHCCHCCHHHHHHHHHH-TT-EEEE-SSS-HCCHHHHHCCHHCCT--EEETT-----S--SS------SG
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHH-cCCCEEecChhhhccCHHHHHHHHHcCCeEeecc-----CCCccc-ccccCc
Confidence 5555443 23332 44577889999 99654431 111111 156677555 442222 3333 1
Q ss_pred hhcCCCCCcEEEEeCC---CChHHHHHHHHHHHHhCCCCeE--Eec--CcCCCCcchhhH--------------HhcccC
Q 013570 125 ARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF--QSY--GNWNNRVGVALS--------------LIGIDR 183 (440)
Q Consensus 125 ~~~p~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~--~t~--g~~n~~~g~p~~--------------l~~~~~ 183 (440)
.+ ..+.++|.+-|| .||-||+..|...|++.|+++. +|. |-.-...|+|+. +.+..+
T Consensus 107 ~~--~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~ 184 (301)
T PF07755_consen 107 IR--EVKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAE 184 (301)
T ss_dssp GG--G-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCC
T ss_pred cc--cCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCc
Confidence 11 236788999887 5999999999999999999973 221 111122333321 112232
Q ss_pred CCcEEEEee--ccCCcchHH---hhccccCCcEEEE-cCCChhhhccC-----CCHHHHHHHHHHhcc
Q 013570 184 AVDIAVLEM--GMSGKGEIL---ELARMARPEIRVV-LNVGDSHLESL-----GSLEDVARAKGEIFQ 240 (440)
Q Consensus 184 ~~~~~VlE~--g~~~~g~~~---~~~~~~~p~vavi-TNi~~dHl~~~-----gs~e~~~~~K~~i~~ 240 (440)
+.++.++|- |+.|+..-. .+....+||..|+ ..-++-|++.| +++++..+.-..+..
T Consensus 185 ~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la~ 252 (301)
T PF07755_consen 185 EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALAG 252 (301)
T ss_dssp C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCCC
T ss_pred CCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhhc
Confidence 459999996 223332111 1222358997655 45566777765 456666655554443
No 256
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.20 E-value=2.5e+02 Score=27.05 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=24.0
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|++.| ..||||+...|...+...+.+++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~ 107 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 107 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE
Confidence 46888886 56899999999998866666653
No 257
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=40.15 E-value=40 Score=37.88 Aligned_cols=32 Identities=28% Similarity=0.196 Sum_probs=28.3
Q ss_pred CCCcEEEEeCCC---ChHHHHHHHHHHHHhCCCCe
Q 013570 130 FSGVLVGVTGSV---GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 130 ~~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~~ 161 (440)
...+.+-||||| |||-++..|.+.+++.|.++
T Consensus 25 ~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~ 59 (817)
T PLN02974 25 LSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPV 59 (817)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 457889999997 99999999999998888765
No 258
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=39.89 E-value=1.7e+02 Score=27.59 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=48.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcc-------cCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDI-------ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~-------~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
..+|-|- =-+.+.++++|+.+.-. .+...+++++|++-+.|..+.+-.+.+.+... ....+.+.|++..
T Consensus 3 ~~vIGDI-HG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~--~~~~~~l~GNHE~ 78 (245)
T PRK13625 3 YDIIGDI-HGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVE--KKAAYYVPGNHCN 78 (245)
T ss_pred eEEEEEC-ccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhh--CCCEEEEeCccHH
Confidence 5678884 34788999999876421 01346789999999999988776665555532 2467888998653
No 259
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=39.77 E-value=1e+02 Score=27.89 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHc---CCCEEEEEcCch
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDA---CIDLIGLVGDRV 429 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~---~~d~vi~~G~~~ 429 (440)
...++.+++.+++.. -..+++.|++.+....+......+.+.+.++ ++..+++.|++-
T Consensus 27 ~~~~~~~~~~~~~~~--~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD 87 (223)
T cd00840 27 FEAFEEIVELAIEEK--VDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVFIIAGNHD 87 (223)
T ss_pred HHHHHHHHHHHHhcC--CCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 456677777766543 3478888998887654444444555555544 567788888754
No 260
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=39.70 E-value=29 Score=31.45 Aligned_cols=27 Identities=41% Similarity=0.663 Sum_probs=21.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.+|+|||. .||||.+.++.. + |+.+.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~---g~~~i 30 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L---GAPVI 30 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c---CCEEE
Confidence 357999995 689999998887 4 66553
No 261
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=39.70 E-value=26 Score=31.84 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCHHHHHHHhcCCCCCCCcee--EEeecCCeEEEEecCCCCHHHHHHHHHHHhccc
Q 013570 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSE--LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (440)
Q Consensus 321 aAia~~~~lg~~~~~i~~~L~~~~~~~gR~e--~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~ 384 (440)
.|.+++..+|+|.--+++.-+.+. .+++. .+..++.+.++|| --.+-.++.++++.+++..
T Consensus 87 lA~~vA~~l~~p~v~vRK~~k~~g--~~~~~~g~~~~g~rVlIVDD-VitTGgS~~~~i~~l~~~G 149 (187)
T PRK13810 87 LATAVSLETGLPLLIVRKSVKDYG--TGSRFVGDLKPEDRIVMLED-VTTSGGSVREAIEVVREAG 149 (187)
T ss_pred HHHHHHHHhCCCEEEEecCCCccC--CCceEEccCCCcCEEEEEEe-ccCCChHHHHHHHHHHHCC
Confidence 455566678877654444434432 23332 1223567888999 8899999999999998753
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=39.64 E-value=41 Score=32.57 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=23.2
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhC-C-CCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESL-G-VNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~-g-~~~~ 162 (440)
..+|++.|.+ |||||...|+..+... | .+|.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~ 228 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVA 228 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEE
Confidence 4578888754 7999999999888654 4 5653
No 263
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=39.08 E-value=38 Score=32.69 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=23.1
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|.|.++| ..||||.+.-|...|+..+.++.
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~ 33 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVV 33 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 46788888 68999999999999988766663
No 264
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=39.04 E-value=1.7e+02 Score=26.81 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=45.4
Q ss_pred EEEecCCCCHHHHHHHHHHHhcc------cCCCcEEEEEcCCCCCChhcHHHHHHHHHHH---HHcCCCEEEEEcCchh
Q 013570 361 IVNDAYNANPISTRAAIDLLKDI------ACNGKRVVILGDMLELGSTERESHEKILSYC---CDACIDLIGLVGDRVV 430 (440)
Q Consensus 361 ii~Dsyahnp~s~~~al~~l~~~------~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~---~~~~~d~vi~~G~~~~ 430 (440)
+|-| --.|.++++++|+.+.-. ......++++|++.+.|..+.+..+.+-+.- .+.+...+++.|++-.
T Consensus 2 vi~D-IHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~ 79 (208)
T cd07425 2 AIGD-LHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHEL 79 (208)
T ss_pred EEeC-ccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcH
Confidence 5778 556899999999877521 1134678888999999988766555443322 2223457788887653
No 265
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=38.92 E-value=37 Score=31.58 Aligned_cols=31 Identities=29% Similarity=0.210 Sum_probs=26.1
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++.|-+|| ..||||-+.=|+.+|++.+.++.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 46788888 68999999999999988777663
No 266
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=38.84 E-value=2.2e+02 Score=28.01 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=48.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhccc----CCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCC-CEEEEEcCchh
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDIA----CNGKRVVILGDMLELGSTERESHEKILSYCCDACI-DLIGLVGDRVV 430 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~~----~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~-d~vi~~G~~~~ 430 (440)
+.+|-| .=-+.+.++++++.+.... .....++.+|+.-+.|..+.+-..-+......+.. +.+++.|++-.
T Consensus 4 iyaIGD-IHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 4 VICVGD-IHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred EEEEEe-ccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChH
Confidence 567788 4458999999999876431 12346888899999998877665555544333322 46788898653
No 267
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=38.59 E-value=1.7e+02 Score=27.03 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=50.1
Q ss_pred ceeEEeec--CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEc
Q 013570 349 RSELLVSR--SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426 (440)
Q Consensus 349 R~e~~~~~--~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G 426 (440)
|++.+... +.+.+|-|. -.|.++++++|+.++-.. ....++.+|++.+.|..+.+ +.+.+.+. ..+.+.|
T Consensus 5 ~~~~~~~~~~~ri~visDi-Hg~~~~l~~~l~~~~~~~-~~d~l~~lGD~vdrG~~~~~----~l~~l~~~--~~~~v~G 76 (218)
T PRK09968 5 RYQKINAHHYRHIWVVGDI-HGEYQLLQSRLHQLSFCP-ETDLLISVGDNIDRGPESLN----VLRLLNQP--WFISVKG 76 (218)
T ss_pred ceeeccCCCCCeEEEEEec-cCCHHHHHHHHHhcCCCC-CCCEEEECCCCcCCCcCHHH----HHHHHhhC--CcEEEEC
Confidence 44444431 356789994 458999999999875222 34678889999999988754 34444432 4678889
Q ss_pred Cchh
Q 013570 427 DRVV 430 (440)
Q Consensus 427 ~~~~ 430 (440)
++-.
T Consensus 77 NHE~ 80 (218)
T PRK09968 77 NHEA 80 (218)
T ss_pred chHH
Confidence 8664
No 268
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=38.41 E-value=33 Score=31.15 Aligned_cols=22 Identities=45% Similarity=0.477 Sum_probs=18.4
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+++|||.| ||||...+|....
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH
Confidence 589999998 7999999998443
No 269
>PRK00300 gmk guanylate kinase; Provisional
Probab=38.22 E-value=32 Score=31.12 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+|+|+|.+ ||||.+.+|...+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999986 8999999998887
No 270
>PLN02348 phosphoribulokinase
Probab=38.10 E-value=50 Score=33.64 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHh
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALES 156 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~ 156 (440)
+..+|||+|- .||||.+..|..+|..
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4569999986 6899999999999953
No 271
>PRK13695 putative NTPase; Provisional
Probab=37.83 E-value=51 Score=29.05 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=21.6
Q ss_pred EEEEeCCC--ChHHHHHHHHHHHHhCCCCe
Q 013570 134 LVGVTGSV--GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL~~~g~~~ 161 (440)
.|++||.+ ||||....+..-|+..|.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 37788765 79999999888886667664
No 272
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=37.69 E-value=27 Score=33.61 Aligned_cols=31 Identities=35% Similarity=0.252 Sum_probs=18.6
Q ss_pred CCCCcEEEEeCCCChHHHH-HHHHHHHHhCCCC
Q 013570 129 RFSGVLVGVTGSVGKSTTK-SMIALALESLGVN 160 (440)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~-~ml~~iL~~~g~~ 160 (440)
.....|.|..|| |||||. +-+..+|...+.+
T Consensus 13 ~~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~~~ 44 (315)
T PF00580_consen 13 EGPLLVNAGAGS-GKTTTLLERIAYLLYEGGVP 44 (315)
T ss_dssp SSEEEEEE-TTS-SHHHHHHHHHHHHHHTSSST
T ss_pred CCCEEEEeCCCC-CchHHHHHHHHHhhccccCC
Confidence 444667788786 888876 4455666444333
No 273
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=37.63 E-value=63 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 116 NSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 116 ~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
..+..+...... ...+.+.|+|. .|||++...+...+...+..+
T Consensus 5 ~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v 50 (151)
T cd00009 5 EAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPF 50 (151)
T ss_pred HHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe
Confidence 344445443322 13345667765 489999988888875444444
No 274
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=37.35 E-value=2.3e+02 Score=23.17 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=42.0
Q ss_pred eEEEEecCCCCHHH---HHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHH--HHHHHHcCCCEEEEEcCchh
Q 013570 359 IKIVNDAYNANPIS---TRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI--LSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 359 ~~ii~Dsyahnp~s---~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l--~~~~~~~~~d~vi~~G~~~~ 430 (440)
+.+|-|........ .....+..... +...+++.|++.+.|..+....... ...........+++.|++-.
T Consensus 3 i~~isD~H~~~~~~~~~~~~~~~~~~~~--~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~ 77 (200)
T PF00149_consen 3 ILVISDLHGGYDDDSDAFRKLDEIAAEN--KPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDY 77 (200)
T ss_dssp EEEEEBBTTTHHHHCHHHHHHHHHHHHT--TTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSS
T ss_pred EEEEcCCCCCCcchhHHHHHHHHHhccC--CCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccc
Confidence 45677754332222 23333333332 4578899999998887766655543 34444556899999998653
No 275
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=37.08 E-value=32 Score=31.90 Aligned_cols=28 Identities=36% Similarity=0.429 Sum_probs=23.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCC
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLG 158 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g 158 (440)
...+.|+-|-| ||||+-.||+.+|.-..
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~ 56 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLIPDS 56 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhccCCC
Confidence 46799999988 59999999999995333
No 276
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=36.87 E-value=40 Score=35.60 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCe
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~ 161 (440)
|=-+|...|..-..+-...-...||||| |||-|. +.+..+.+..+
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGS-GKTfT~---AnVI~~~~rPt 60 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGS-GKTFTM---ANVIAKVQRPT 60 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccC-CchhHH---HHHHHHhCCCe
Confidence 7778888888854441334568999997 999874 44454555554
No 277
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=36.73 E-value=46 Score=32.82 Aligned_cols=79 Identities=22% Similarity=0.165 Sum_probs=51.8
Q ss_pred ccchHHHHhcCCCeEEE------eccccCC-----CCceEEEEcCCCCccHHHHHHHHHHHhhc-CCCCCcEEEEeCC--
Q 013570 75 HEFISPELYGKGCVGVI------GNQVCNN-----WDKGFVQVEGNGNVNTLNSLVNMACYARN-SRFSGVLVGVTGS-- 140 (440)
Q Consensus 75 ~~~i~~A~~~~Ga~~vv------~~~~~~~-----~~~~~i~V~~~~~~d~~~al~~la~~~~~-p~~~~~vI~VTGT-- 140 (440)
..|+.+|++ +|...+= .+.+--. .++.+.-|. ++..-+..++- .. ++.+.++|.|-||
T Consensus 87 ~~~i~eAl~-~G~nVvsglh~~ls~dp~~~k~A~~~G~rl~dvR-----~p~~~l~~~~t--G~~~k~~a~~V~vvGTd~ 158 (339)
T COG3367 87 REYIVEALE-AGMNVVSGLHSFLSDDPEFVKLAERTGVRLDDVR-----KPPLDLEYLCT--GMARKVDAKVVLVVGTDC 158 (339)
T ss_pred HHHHHHHHH-hCchhhhhhHHHhhcChHHHHHHHHcCCeeEeec-----cCccchhhhcc--CcccccCCcEEEEecccc
Confidence 378889999 9865432 2111000 155566555 44444443331 11 3455889999999
Q ss_pred -CChHHHHHHHHHHHHhCCCCe
Q 013570 141 -VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 141 -nGKTTT~~ml~~iL~~~g~~~ 161 (440)
.||-||+..|...++..|+++
T Consensus 159 ~vGKrTTa~~L~~~~~e~G~~a 180 (339)
T COG3367 159 AVGKRTTALELREAAREEGIKA 180 (339)
T ss_pred ccchhHHHHHHHHHHHHhCCcc
Confidence 599999999999999999986
No 278
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=36.58 E-value=2.3e+02 Score=26.02 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
...++++++.+++..++-..+++.|++.+.|.. +.++.+.+.+.+.+...+++.|++-
T Consensus 24 ~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p~~~v~GNHD 81 (240)
T cd07402 24 AASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--ESYERLRELLAALPIPVYLLPGNHD 81 (240)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--HHHHHHHHHHhhcCCCEEEeCCCCC
Confidence 567888888888763234578888998877643 3445677777777788888889754
No 279
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=36.46 E-value=44 Score=31.54 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.8
Q ss_pred CCCcEEEEeCCCC--hHHHHHHHHHHHH
Q 013570 130 FSGVLVGVTGSVG--KSTTKSMIALALE 155 (440)
Q Consensus 130 ~~~~vI~VTGTnG--KTTT~~ml~~iL~ 155 (440)
+...+.+|.|-|| |||+...|..+|.
T Consensus 23 ~~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 23 FDPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456889999985 9999999999993
No 280
>PRK06761 hypothetical protein; Provisional
Probab=36.36 E-value=31 Score=33.52 Aligned_cols=30 Identities=37% Similarity=0.459 Sum_probs=24.2
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|.|+| -.||||++..+..-|...++++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 5788887 46899999999999976676653
No 281
>PRK05568 flavodoxin; Provisional
Probab=36.26 E-value=88 Score=26.36 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCC
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d 420 (440)
|..++..++.+.... .+|++++||. .|.......+.+.+.+.+.+++
T Consensus 66 ~~~~~~f~~~~~~~~-~~k~~~~f~t---~G~~~~~~~~~~~~~l~~~g~~ 112 (142)
T PRK05568 66 EGEMEPFVESISSLV-KGKKLVLFGS---YGWGDGEWMRDWVERMEGYGAN 112 (142)
T ss_pred chhHHHHHHHhhhhh-CCCEEEEEEc---cCCCCChHHHHHHHHHHHCCCE
Confidence 367888888876544 5789999998 4543334456666677665433
No 282
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=36.16 E-value=1.6e+02 Score=27.30 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=36.7
Q ss_pred EEEEecCCC--CHHHHHHHHHHHhcccCCCcEEEEEcCCCCC--Chh-cHHHHHHHH---HHHHHcCCCEEEEEcCch
Q 013570 360 KIVNDAYNA--NPISTRAAIDLLKDIACNGKRVVILGDMLEL--GST-ERESHEKIL---SYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 360 ~ii~Dsyah--np~s~~~al~~l~~~~~~~r~i~VlG~m~e~--G~~-~~~~~~~l~---~~~~~~~~d~vi~~G~~~ 429 (440)
.+|.|..-. .++..+..++.+.+.......+++.|++.+. |+. .....+++. +.+.+.+...+++.|++-
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD 79 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRD 79 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 356663311 4555666777776543234678888888763 211 122223333 333333456777778754
No 283
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.15 E-value=3.6e+02 Score=30.26 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=20.9
Q ss_pred cEEEEeCCC--ChHHHHHHHHHH--HHhCCC
Q 013570 133 VLVGVTGSV--GKSTTKSMIALA--LESLGV 159 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~i--L~~~g~ 159 (440)
.+++|||-| ||||.-.++..+ +...|.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~ 353 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGI 353 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCC
Confidence 689999976 799999998877 334553
No 284
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=35.97 E-value=77 Score=27.91 Aligned_cols=44 Identities=30% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeEEecCcCCCCcch
Q 013570 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGV 174 (440)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~ 174 (440)
.+..+|-|||- .||+|.+-.|.+.|-+.|.-+. ....-|-+.|.
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y-~LDGDNvRhGL 74 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTY-ILDGDNVRHGL 74 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEE-EecCccccccc
Confidence 45679999985 5899999999999978776554 33333444443
No 285
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=35.83 E-value=41 Score=30.74 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=25.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
...+-|||-| ||||.-++|+-+++.....+.
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~ 60 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVY 60 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEE
Confidence 4578999998 599999999999976666664
No 286
>PRK06762 hypothetical protein; Provisional
Probab=35.78 E-value=42 Score=29.21 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
++|.|+|. .||||.+..|+.-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889984 68999999999887
No 287
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=35.76 E-value=34 Score=34.98 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=17.3
Q ss_pred cEEEEeCC--CChHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIAL 152 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~ 152 (440)
..|||||. .||||++.+|+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~ 23 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE 23 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 57999995 799999999876
No 288
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=35.54 E-value=58 Score=29.58 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=22.2
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVTGSV--GKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+++.|+|-. ||||+...+...++..|+++..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~ 51 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIG 51 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 455555554 5999999999999899988754
No 289
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=35.43 E-value=63 Score=26.14 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCCChhcHHHHHHHHHHH
Q 013570 386 NGKRVVILGDMLELGSTERESHEKILSYC 414 (440)
Q Consensus 386 ~~r~i~VlG~m~e~G~~~~~~~~~l~~~~ 414 (440)
+.++++.+|+ .|+.+.+.+.++++.-
T Consensus 63 P~~kfiLIGD---sgq~DpeiY~~ia~~~ 88 (100)
T PF09949_consen 63 PERKFILIGD---SGQHDPEIYAEIARRF 88 (100)
T ss_pred CCCcEEEEee---CCCcCHHHHHHHHHHC
Confidence 4788999999 9999988888887653
No 290
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=35.18 E-value=3.9e+02 Score=27.24 Aligned_cols=99 Identities=25% Similarity=0.270 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCC-HHHHHHHhc-----CCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEc
Q 013570 321 AAAAVATLFGVS-LAQVGISLS-----NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394 (440)
Q Consensus 321 aAia~~~~lg~~-~~~i~~~L~-----~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG 394 (440)
-|+++....|+. ++.+...|+ .-++...||..++ ..+| +.|-.+++++-..+++ .+-..+|+|
T Consensus 210 DAlavl~ry~i~~p~~v~~~l~~~~~~t~~~~d~~~~~v~----~~iI----asn~~sleaaa~~~~~---~G~~a~Il~ 278 (422)
T COG2379 210 DALAVLERYGIALPESVRAHLESERAETPKPGDERFANVE----NRII----ASNRLSLEAAASEARA---LGFKAVILG 278 (422)
T ss_pred HHHHHHHHhcccccHHHHHHHhhhcccCCCCCccccccce----eEEE----echHHHHHHHHHHHHh---cCCeeEEee
Confidence 356666666766 677877777 3334344444332 3455 4578999999888876 357899999
Q ss_pred CCCCCChhc-HHHHHHHHHHHHHcC----CCEEEEEcCchh
Q 013570 395 DMLELGSTE-RESHEKILSYCCDAC----IDLIGLVGDRVV 430 (440)
Q Consensus 395 ~m~e~G~~~-~~~~~~l~~~~~~~~----~d~vi~~G~~~~ 430 (440)
+..|.-.++ ...|-.+.+..++++ --.+++.|-++.
T Consensus 279 d~ieGEArevg~v~asiarev~~~g~Pf~~P~~llsGGETT 319 (422)
T COG2379 279 DTIEGEAREVGRVHASIAREVARRGRPFKKPVVLLSGGETT 319 (422)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCCCCCEEEEECCceE
Confidence 988865443 356666777777664 346667665554
No 291
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=35.02 E-value=29 Score=35.93 Aligned_cols=74 Identities=20% Similarity=0.242 Sum_probs=47.1
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcE
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~v 211 (440)
=|-|+|. .||||-+..++..+.+.| ++..|.-+ |..|.--++=++|.=+|.+|...+++ .-+++||.
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~G-kiVKTmEs-------PRDl~v~~eITQYs~l~g~me~t~Di---LLLvRPDY 333 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQG-KIVKTMES-------PRDLQVSPEITQYSPLEGDMEKTADI---LLLVRPDY 333 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHHhcC-cEEeeccC-------cccccCChhhhhcccccCchhhhccE---EEEecCCc
Confidence 4667775 689999999999997666 46676654 22222112335677777765444333 23468988
Q ss_pred EEEcCCC
Q 013570 212 RVVLNVG 218 (440)
Q Consensus 212 aviTNi~ 218 (440)
.|+--+.
T Consensus 334 TIyDEmR 340 (604)
T COG1855 334 TIYDEMR 340 (604)
T ss_pred eehhhhh
Confidence 8875553
No 292
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=34.94 E-value=2e+02 Score=27.88 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=46.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
..+|-|. --+.++++++|+.++-.+ ....+.++|++...|..+.+. .+.+.+.+...+++.|++-.
T Consensus 3 ~YvIGDI-HGc~daL~~LL~~i~f~~-~~D~l~~lGDlVdRGP~slev----L~~l~~l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 3 TYLIGDL-HGCYDELQALLERVEFDP-GQDTLWLTGDLVARGPGSLEV----LRYVKSLGDAVRLVLGNHDL 68 (279)
T ss_pred EEEEEcc-cCCHHHHHHHHHHhCcCC-CCCEEEEeCCccCCCCCHHHH----HHHHHhcCCCeEEEEChhHH
Confidence 4578884 458999999999986322 355788899999999887554 44445544445678888664
No 293
>PRK01184 hypothetical protein; Provisional
Probab=34.82 E-value=54 Score=29.05 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=20.1
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeEE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+++|++||- .||||.+. +++..|+.+..
T Consensus 1 ~~~i~l~G~~GsGKsT~a~----~~~~~g~~~i~ 30 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK----IAREMGIPVVV 30 (184)
T ss_pred CcEEEEECCCCCCHHHHHH----HHHHcCCcEEE
Confidence 358899986 58999765 46667777653
No 294
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=34.64 E-value=43 Score=31.77 Aligned_cols=26 Identities=35% Similarity=0.311 Sum_probs=22.4
Q ss_pred eCCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 138 TGSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
-|-.||||++..+++.|...|.++..
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~vl~ 36 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKPLC 36 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence 37889999999999999888888753
No 295
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=34.62 E-value=67 Score=27.65 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=21.1
Q ss_pred EEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 135 VGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 135 I~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|.|+| -.||||.+..|...|...+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~ 31 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVY 31 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 45555 36999999999999976666553
No 296
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=34.62 E-value=1.9e+02 Score=28.34 Aligned_cols=75 Identities=9% Similarity=0.105 Sum_probs=52.7
Q ss_pred EeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHH---HHHcCCCEEEEEcCch
Q 013570 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSY---CCDACIDLIGLVGDRV 429 (440)
Q Consensus 353 ~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~---~~~~~~d~vi~~G~~~ 429 (440)
+...+.+.|+.- |.. +++++.+-+...+. ....|-++.+|.....-+...|..+-+. ....+...|+++. ..
T Consensus 5 ~~~ad~l~IasG-YvS-~~~l~~L~~l~e~~--~~~~I~LivGM~~~eGis~~~~~~~~~L~~~~~~~~~g~vYv~~-~~ 79 (296)
T PF09565_consen 5 IKEADELRIASG-YVS-NDALEELKKLVEEY--HILKIKLIVGMYYYEGISIPQHNALCKLNDFLQENGIGEVYVVP-DP 79 (296)
T ss_pred cCCCCeEEEEEe-cCC-HHHHHHHHHHHhhC--CCcceEEEEeccccCCcCHHHHHHHHHHHHHhhhcCCceEEEeC-CC
Confidence 334467788888 986 88888776666543 3566777777887766788888888877 7777788887774 44
Q ss_pred hhh
Q 013570 430 VVQ 432 (440)
Q Consensus 430 ~~~ 432 (440)
+.|
T Consensus 80 ~~H 82 (296)
T PF09565_consen 80 PYH 82 (296)
T ss_pred Ccc
Confidence 433
No 297
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=34.51 E-value=47 Score=35.27 Aligned_cols=33 Identities=33% Similarity=0.313 Sum_probs=28.8
Q ss_pred CCCcEEEEeCCC------ChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTGSV------GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTGTn------GKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+.+.|-||+.+ |||||+-=|.+.|.+.|.++.
T Consensus 61 ~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~ 99 (587)
T PRK13507 61 PDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVS 99 (587)
T ss_pred CCCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceE
Confidence 347889999876 999999999999999998874
No 298
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=34.43 E-value=40 Score=29.75 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=18.6
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
++|.|+|.+ ||||+...|...|.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467888875 79999999988873
No 299
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=34.42 E-value=35 Score=28.42 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=19.7
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..+++|+|.| ||||...+|...++
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 5689999998 79998888777774
No 300
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=34.38 E-value=32 Score=30.22 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|.| ||||...+|..++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35689999997 89999999988774
No 301
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=34.35 E-value=1.3e+02 Score=28.77 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
.+.++++++.+++..+.-..+++.|++.+.|. .+.++.+.+.+.+.+....++.|++-
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v~GNHD 96 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWLPGNHD 96 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEeCCCCC
Confidence 45677777776554322345666677666543 33445556666666666677777643
No 302
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=34.26 E-value=1.1e+02 Score=32.76 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=28.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcC
Q 013570 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395 (440)
Q Consensus 360 ~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~ 395 (440)
.||+++|+.|...+++++++..+ .+|+++|+|-
T Consensus 228 rVIv~tfaSni~Ri~~i~~~A~~---~gR~vvv~Gr 260 (555)
T COG0595 228 RVIVTTFASNIERIQTIIDAAEK---LGRKVVVTGR 260 (555)
T ss_pred cEEEEEchhhHHHHHHHHHHHHH---cCCeEEEEcH
Confidence 46778899999999999999987 4799999984
No 303
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=34.10 E-value=54 Score=31.46 Aligned_cols=30 Identities=37% Similarity=0.553 Sum_probs=21.9
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHHhCCCCe
Q 013570 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~ 161 (440)
.++|+|+ |-.||||++.-+..++.+.+.++
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~ 34 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKV 34 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCe
Confidence 3578888 88999999999944444555554
No 304
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=34.02 E-value=52 Score=34.95 Aligned_cols=33 Identities=36% Similarity=0.390 Sum_probs=28.2
Q ss_pred CCCcEEEEeC------CCChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTG------TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+.++|.||. --|||||+-=|++.|.+.|.+++
T Consensus 52 ~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~i 90 (578)
T PRK13506 52 PKGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKVC 90 (578)
T ss_pred CCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCceE
Confidence 3568999999 45899999999999998898763
No 305
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=33.80 E-value=50 Score=34.19 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.1
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHhCCCCe
Q 013570 134 LVGVTGS---VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 134 vI~VTGT---nGKTTT~~ml~~iL~~~g~~~ 161 (440)
.|-|||| .|||+++..|.+.|++.|.+|
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v 33 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAV 33 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCee
Confidence 3555555 699999999999999999876
No 306
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=33.65 E-value=50 Score=28.00 Aligned_cols=51 Identities=29% Similarity=0.492 Sum_probs=34.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeecc
Q 013570 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~ 194 (440)
+.+..|-.||||++..++..|...|.++...-... ..+ .+ ..++.|+.++.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~----~~~----~~--~yd~VIiD~p~ 54 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL----GLA----NL--DYDYIIIDTGA 54 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC----CCC----CC--CCCEEEEECCC
Confidence 34456889999999999999988888875322221 000 00 17899999974
No 307
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=33.58 E-value=1.4e+02 Score=26.53 Aligned_cols=64 Identities=25% Similarity=0.289 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhhhhhh
Q 013570 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKWR 436 (440)
Q Consensus 367 ahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~~~~ 436 (440)
..+|+.++.+.+.+++.++ + +-|.|. ..|....+...++.+.+++.+.|.| ++|=.++.+..|-
T Consensus 53 G~~~~~~~~~~~~l~~~yp-~--l~i~g~--~~g~~~~~~~~~i~~~I~~~~pdiv-~vglG~PkQE~~~ 116 (171)
T cd06533 53 GAKPEVLEKAAERLRARYP-G--LKIVGY--HHGYFGPEEEEEIIERINASGADIL-FVGLGAPKQELWI 116 (171)
T ss_pred CCCHHHHHHHHHHHHHHCC-C--cEEEEe--cCCCCChhhHHHHHHHHHHcCCCEE-EEECCCCHHHHHH
Confidence 4578888888887777652 2 223331 1233333334447777777766654 4466666666553
No 308
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=33.58 E-value=31 Score=30.52 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=38.5
Q ss_pred HHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHc
Q 013570 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDA 417 (440)
Q Consensus 338 ~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~ 417 (440)
+.|. .+|.|+|..++-..+.. .-.+ ...-..+++.+++.++.. .+.+.|+|+ .++-+.+..+
T Consensus 48 eslp-~~pLp~R~niVlSr~~~-~~~~-~~~~~~s~~~al~~~~~~---~~~i~ViGG------------~~iy~~~l~~ 109 (161)
T PF00186_consen 48 ESLP-FRPLPGRINIVLSRNPD-YEPE-GVEVVSSLEEALELAKDK---DEEIFVIGG------------AEIYEQFLPY 109 (161)
T ss_dssp HHST-GSSBTTSEEEEESSSTT-SCTT-TSEEESSHHHHHHHHTTS---ESEEEEEE-------------HHHHHHHHHG
T ss_pred hcCC-ccCCCCCeEEEEEcCcc-cccC-CceeeCCHHHHHHHhhcc---CCcEEEECC------------HHHHHHHHHh
Confidence 3444 56899999988653221 0001 112234667777755432 367888887 2344444445
Q ss_pred CCCEEEEEc
Q 013570 418 CIDLIGLVG 426 (440)
Q Consensus 418 ~~d~vi~~G 426 (440)
+|+++++=
T Consensus 110 -~d~l~lT~ 117 (161)
T PF00186_consen 110 -ADRLYLTR 117 (161)
T ss_dssp -ESEEEEEE
T ss_pred -CCeEEEEE
Confidence 78888763
No 309
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=33.22 E-value=29 Score=33.48 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=34.6
Q ss_pred ceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHH
Q 013570 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 101 ~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL 154 (440)
..++..+ +..+-+.++.+..+.|.-..-.||+.| .||.|.+.+.+++.
T Consensus 8 m~lVlf~-----~ai~hi~ri~RvL~~~~Gh~LLvG~~G-sGr~sl~rLaa~i~ 55 (268)
T PF12780_consen 8 MNLVLFD-----EAIEHIARISRVLSQPRGHALLVGVGG-SGRQSLARLAAFIC 55 (268)
T ss_dssp ------H-----HHHHHHHHHHHHHCSTTEEEEEECTTT-SCHHHHHHHHHHHT
T ss_pred cceeeHH-----HHHHHHHHHHHHHcCCCCCeEEecCCC-ccHHHHHHHHHHHh
Confidence 3456667 777777777777777676677899988 89999999999888
No 310
>PF12846 AAA_10: AAA-like domain
Probab=33.14 E-value=41 Score=32.04 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=19.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
-++|-||| |||++...+..-+...|..+.
T Consensus 5 ~i~G~tGs-GKT~~~~~l~~~~~~~g~~~~ 33 (304)
T PF12846_consen 5 LILGKTGS-GKTTLLKNLLEQLIRRGPRVV 33 (304)
T ss_pred EEECCCCC-cHHHHHHHHHHHHHHcCCCEE
Confidence 35666664 899988766544447776654
No 311
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=33.07 E-value=2.6e+02 Score=26.02 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=36.9
Q ss_pred eEEEEecCC--CCHHHHHHHHHHHhcccCCCcEEEEEcCCCCC--Chhc-HHHHHHHH---HHHHHcCCCEEEEEcCch
Q 013570 359 IKIVNDAYN--ANPISTRAAIDLLKDIACNGKRVVILGDMLEL--GSTE-RESHEKIL---SYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 359 ~~ii~Dsya--hnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~--G~~~-~~~~~~l~---~~~~~~~~d~vi~~G~~~ 429 (440)
+.+|-|..- .+|+-.++.++.++........+++.|++.+. |+.. .....++. +.+.+.++..+++.|++-
T Consensus 3 i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD 81 (241)
T PRK05340 3 TLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRD 81 (241)
T ss_pred EEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 456777431 13444455566664432234688888998764 2221 12223333 333344456777788754
No 312
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=33.04 E-value=51 Score=29.09 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=19.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+.++|.|.|.. ||||.+..|+.-+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35788888864 7999999998766
No 313
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=33.02 E-value=66 Score=34.21 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=27.9
Q ss_pred CCcEEEEeC------CCChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTG------TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.++|.||. .-|||||+.=|++.|.+.|.++.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvl 91 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTV 91 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468999998 45899999999999998998874
No 314
>PRK08181 transposase; Validated
Probab=32.90 E-value=94 Score=29.93 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 115 LNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 115 ~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
..+|..+-.|... ..++-++|=+|| |||-.+..+..-+...|++|..
T Consensus 93 ~~~L~~~~~~~~~-~~nlll~Gp~Gt-GKTHLa~Aia~~a~~~g~~v~f 139 (269)
T PRK08181 93 VMAIAAGDSWLAK-GANLLLFGPPGG-GKSHLAAAIGLALIENGWRVLF 139 (269)
T ss_pred HHHHHHHHHHHhc-CceEEEEecCCC-cHHHHHHHHHHHHHHcCCceee
Confidence 3344333235444 455666777776 9999998888777677888753
No 315
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=32.86 E-value=62 Score=33.14 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=19.4
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHH
Q 013570 130 FSGVLVGVTG--SVGKSTTKSMIALAL 154 (440)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~iL 154 (440)
.-.+.|+|+| +.||||.+..|+..+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3467889987 579999998887655
No 316
>PRK06756 flavodoxin; Provisional
Probab=32.62 E-value=2.2e+02 Score=24.11 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCE
Q 013570 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDL 421 (440)
Q Consensus 369 np~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~ 421 (440)
-|+.+...++.+......++++++||.............+.+.+.+.+.++..
T Consensus 65 ~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~ 117 (148)
T PRK06756 65 LPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAV 117 (148)
T ss_pred CcHHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEE
Confidence 47779999988865443688999998722211112355566777777765443
No 317
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=32.52 E-value=1.6e+02 Score=26.89 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=42.9
Q ss_pred EEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 361 IVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 361 ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
+|-|.. -+.+.+.++++.+... ....++++|++.+.|..+.+....+.+.... ....+++.|++..
T Consensus 2 ~igDiH-g~~~~l~~~l~~~~~~--~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~ 67 (225)
T cd00144 2 VIGDIH-GCLDDLLRLLEKIGFP--PNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHED 67 (225)
T ss_pred EEeCCC-CCHHHHHHHHHHhCCC--CCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchh
Confidence 566744 4688888888877542 4678999999999887765444433322111 2367778887654
No 318
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=32.44 E-value=2.3e+02 Score=25.71 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=44.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 358 ~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.+.+|-|.. .|..+++++++.+.... ....++++|++.+.|..+. ++.+.+.. ...+++.|++-.
T Consensus 2 ri~~isDiH-g~~~~l~~~l~~~~~~~-~~d~~~~~GD~v~~g~~~~----~~~~~l~~--~~~~~v~GNhe~ 66 (207)
T cd07424 2 RDFVVGDIH-GHYSLLQKALDAVGFDP-ARDRLISVGDLIDRGPESL----ACLELLLE--PWFHAVRGNHEQ 66 (207)
T ss_pred CEEEEECCC-CCHHHHHHHHHHcCCCC-CCCEEEEeCCcccCCCCHH----HHHHHHhc--CCEEEeECCChH
Confidence 356788954 48899999988875322 3567888999988887764 34444443 246778887653
No 319
>PRK06835 DNA replication protein DnaC; Validated
Probab=32.34 E-value=90 Score=31.04 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEe
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t 164 (440)
........++.-+......+-+.|=||| |||..+..|+.-|...|+.|...
T Consensus 167 ~~~~~~~~f~~~f~~~~~~Lll~G~~Gt-GKThLa~aIa~~l~~~g~~V~y~ 217 (329)
T PRK06835 167 KILEKCKNFIENFDKNNENLLFYGNTGT-GKTFLSNCIAKELLDRGKSVIYR 217 (329)
T ss_pred HHHHHHHHHHHHHhccCCcEEEECCCCC-cHHHHHHHHHHHHHHCCCeEEEE
No 320
>PLN02759 Formate--tetrahydrofolate ligase
Probab=32.29 E-value=64 Score=34.58 Aligned_cols=33 Identities=39% Similarity=0.385 Sum_probs=28.0
Q ss_pred CCCcEEEEeCCC------ChHHHHHHHHHHHHh-CCCCeE
Q 013570 130 FSGVLVGVTGSV------GKSTTKSMIALALES-LGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTGTn------GKTTT~~ml~~iL~~-~g~~~~ 162 (440)
.+.+.|-||+.+ |||||+-=|.+.|.+ .|.++.
T Consensus 67 ~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~ 106 (637)
T PLN02759 67 PDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVV 106 (637)
T ss_pred CCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeE
Confidence 346889999876 999999999999986 788864
No 321
>PRK06526 transposase; Provisional
Probab=32.00 E-value=69 Score=30.55 Aligned_cols=44 Identities=16% Similarity=0.331 Sum_probs=27.2
Q ss_pred HHHHHHH--HhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 117 SLVNMAC--YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 117 al~~la~--~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+..++. |... ..++-++|=+| .|||.++.-|..-+...|+++.
T Consensus 85 ~~~~l~~~~fi~~-~~nlll~Gp~G-tGKThLa~al~~~a~~~g~~v~ 130 (254)
T PRK06526 85 TIAHLGTLDFVTG-KENVVFLGPPG-TGKTHLAIGLGIRACQAGHRVL 130 (254)
T ss_pred HHHHHhcCchhhc-CceEEEEeCCC-CchHHHHHHHHHHHHHCCCchh
Confidence 3444554 5544 33343444444 4899999888777767888774
No 322
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=31.95 E-value=3.4e+02 Score=25.19 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=47.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhccc--------CCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 358 GIKIVNDAYNANPISTRAAIDLLKDIA--------CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 358 ~~~ii~Dsyahnp~s~~~al~~l~~~~--------~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
++.+|-| --.|.++++++|+.+.-.. +...+++.+|++-+.|..+.+-.+.+-+...+ -..+++.|++-
T Consensus 2 ~i~vigD-IHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 2 PFDIIGD-VHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CeEEEEE-CCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 4678889 4458999999999873211 12357999999999998876655544333222 24678889876
Q ss_pred h
Q 013570 430 V 430 (440)
Q Consensus 430 ~ 430 (440)
.
T Consensus 79 ~ 79 (234)
T cd07423 79 N 79 (234)
T ss_pred H
Confidence 4
No 323
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.92 E-value=32 Score=30.52 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|-| ||||...+|..++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35689999997 89999999888774
No 324
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.50 E-value=50 Score=34.69 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=23.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH-hCCC-CeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE-SLGV-NVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~-~~g~-~~~ 162 (440)
..+|++.|.| |||||...|+..+. ..|. ++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~ 290 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVA 290 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEE
Confidence 4688888876 69999999998874 3443 553
No 325
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=31.24 E-value=2.1e+02 Score=29.70 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCCC----HHHHHHHHHHHhcccCCCcEEEEE
Q 013570 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNAN----PISTRAAIDLLKDIACNGKRVVIL 393 (440)
Q Consensus 320 laAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsyahn----p~s~~~al~~l~~~~~~~r~i~Vl 393 (440)
-+|-.+|..||++...+ .+..|.-=+-..++... +..+.||-. .... --.+--+++++++.. .+++++|+
T Consensus 130 ~LA~~IA~~Lg~~l~~~--~~~rFpDGE~~Vri~e~VrG~dV~IVqS-~~~pvNd~LmELLllidAlr~ag-AkrItlVi 205 (439)
T PTZ00145 130 LLSKNIADHLGTILGRV--HLKRFADGEVSMQFLESIRGKDVYIIQP-TCPPVNENLIELLLMISTCRRAS-AKKITAVI 205 (439)
T ss_pred HHHHHHHHHhCCCceee--EEEECCCCCEEEEECCCcCCCeEEEEec-CCCCCcHHHHHHHHHHHHHHHhc-cCeEEEEe
Confidence 45566777888876544 44666532222232221 244555544 3322 233444456676665 56788888
Q ss_pred cCCCCC-Ch-----hcHHHHHHHHHHHHHcCCCEEEEEcCchhhhh
Q 013570 394 GDMLEL-GS-----TERESHEKILSYCCDACIDLIGLVGDRVVVQC 433 (440)
Q Consensus 394 G~m~e~-G~-----~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~ 433 (440)
--|.=. -+ ++.---+.+++.+...++|+|+++..+.....
T Consensus 206 PYl~YaRQDR~~~~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~ 251 (439)
T PTZ00145 206 PYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQ 251 (439)
T ss_pred ecccchheecccCCCCChhHHHHHHHHHHcCCCeEEEEecChHHHH
Confidence 553200 00 11112356888888888999999998876443
No 326
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=31.18 E-value=1.1e+02 Score=28.78 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCCCCC-------CCceeEEeecCCeEEEEecCCCCHHHHHHHHHHH
Q 013570 318 NACAAAAVATLFGVSLAQVGISLSNFSPV-------QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380 (440)
Q Consensus 318 NalaAia~~~~lg~~~~~i~~~L~~~~~~-------~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l 380 (440)
-+..|+..|...++|.+.|..+|++.... +-++|.+. .+|+.+|+++.-.|+.-+..-+..+
T Consensus 44 ~L~~ai~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~g-P~Gvaiive~lTDN~nRt~~~ir~~ 112 (234)
T PF01709_consen 44 RLRSAIEKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGYG-PGGVAIIVECLTDNKNRTVSDIRSI 112 (234)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEEE-TTTEEEEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEEc-CCCcEEEEEEeCCCHhHHHHHHHHH
Confidence 35667888899999999999999887762 22344333 4889999999988988777777765
No 327
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=31.17 E-value=46 Score=30.68 Aligned_cols=27 Identities=41% Similarity=0.726 Sum_probs=20.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.+||+||. .||||++. .|++.|+.++
T Consensus 1 M~iVGLTGgiatGKStVs~----~f~~~G~~vI 29 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQ----VFKALGIPVI 29 (225)
T ss_pred CeEEEeecccccChHHHHH----HHHHcCCcEe
Confidence 358999997 68998764 5667788774
No 328
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=31.16 E-value=1.1e+02 Score=32.79 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeC--CCChHHHHHHHHHHHHh
Q 013570 116 NSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALES 156 (440)
Q Consensus 116 ~al~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~ml~~iL~~ 156 (440)
++.+.|.++|.....+..+|.+|| -.||||++..|+..|..
T Consensus 376 eV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 376 EVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 444556665554244456899998 46899999999999954
No 329
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=31.13 E-value=36 Score=31.18 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.6
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..+++|+|-| ||||...+|.-++.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 5689999997 89999999988773
No 330
>PRK00131 aroK shikimate kinase; Reviewed
Probab=31.02 E-value=61 Score=28.06 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=18.8
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL 154 (440)
.+.|.++| ..||||++..|+..|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45677776 469999999999998
No 331
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=30.90 E-value=53 Score=31.52 Aligned_cols=30 Identities=37% Similarity=0.402 Sum_probs=24.1
Q ss_pred cEEEEeC----CCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTG----TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.|-||| +-||..|++-|..+|++.|++|.
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~ 35 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVT 35 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeee
Confidence 4577776 57999999999999999999984
No 332
>PRK08118 topology modulation protein; Reviewed
Probab=30.82 E-value=58 Score=28.76 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=17.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
+.|.|.|+ .||||.+..|+..|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 34666654 58999999999888
No 333
>PRK12378 hypothetical protein; Provisional
Probab=30.70 E-value=2.6e+02 Score=26.36 Aligned_cols=62 Identities=11% Similarity=-0.017 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCC-ceeEEee----cCCeEEEEecCCCCHHHHHHHHHHH
Q 013570 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQM-RSELLVS----RSGIKIVNDAYNANPISTRAAIDLL 380 (440)
Q Consensus 319 alaAia~~~~lg~~~~~i~~~L~~~~~~~g-R~e~~~~----~~~~~ii~Dsyahnp~s~~~al~~l 380 (440)
+..||..|...++|.+.|..+|++-.+..+ -++.+.. .+|+.||+++.-.|..-..+-++.+
T Consensus 47 Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgygPgGvaiiVe~lTDN~nRt~~~vr~~ 113 (235)
T PRK12378 47 LRFVIERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGFGPNGVMVIVECLTDNVNRTVANVRSA 113 (235)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEEcCCCcEEEEEECCCCHHHHHHHHHHH
Confidence 456777888999999999999988664222 2333221 4789999999988888776666655
No 334
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=30.67 E-value=1.3e+02 Score=30.59 Aligned_cols=50 Identities=26% Similarity=0.159 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHhhcC---CCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 113 NTLNSLVNMACYARNS---RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 113 d~~~al~~la~~~~~p---~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|...++..+..-+..+ .....++.|-|- .||||.+.+|+.-|-+.|+++.
T Consensus 51 d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~ 105 (398)
T COG1341 51 DRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVA 105 (398)
T ss_pred HhhhHHHHHhhcccccchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEE
Confidence 6666666666521111 223457777774 6999999999999978898863
No 335
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=30.52 E-value=77 Score=23.22 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.0
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
++..|+|-| ||||.-..+..+|
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478888876 7999999999999
No 336
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=30.49 E-value=2.2e+02 Score=24.95 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhh
Q 013570 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (440)
Q Consensus 142 GKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dH 221 (440)
|=-|+..+|...+...|+.+..+.. |.. +...+.-++-+-+|.... ......-++|+.|..+-
T Consensus 4 Gv~t~g~ila~a~~~~G~~v~~~~~-ygs---------~~rGG~~~~~vris~~~~---~~~~~~~~~Dilv~l~~---- 66 (173)
T PF01558_consen 4 GVVTAGKILARAAAREGYYVQSTPE-YGS---------EIRGGPVVSHVRISDEPI---IPSPPVGEADILVALDP---- 66 (173)
T ss_dssp THHHHHHHHHHHHHHTTSEEEEEEE-EES---------SSSSSCEEEEEEEESS-----SSSS-TSSESEEEESSH----
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeC-CCh---------hhcCCeEEEEEEEecCcC---ccCcccCCCCEEEEcCH----
Confidence 4457788899998899998754332 111 122344445555542211 11222248899888752
Q ss_pred hccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhc--CCCC----CcEEEEeccCCcceEEEeceEEEcCCeEEE
Q 013570 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRG----VRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295 (440)
Q Consensus 222 l~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~--~~~~----~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f 295 (440)
+.+. ..+..++++|++|+|.+........ .... .+++.+-..
T Consensus 67 -------~~~~----~~~~~l~~~g~vi~ns~~~~~~~~~~~~~~~~~~~~~v~~ip~~--------------------- 114 (173)
T PF01558_consen 67 -------EALE----RHLKGLKPGGVVIINSSLVKPEPEEKDKPAYFPRIERVIGIPAT--------------------- 114 (173)
T ss_dssp -------HHHH----HCGTTCETTEEEEEETTT-CHHHHHHHCCCHHHHHCEEEEE-HH---------------------
T ss_pred -------HHHH----HHhcCcCcCeEEEEECCCCCcHhHhhccccccccceeEEeccHH---------------------
Confidence 3322 6667788999999998642211111 1000 011111100
Q ss_pred EEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 013570 296 VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343 (440)
Q Consensus 296 ~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~ 343 (440)
.+-....+..-..|.++.-+++..++++.+.+.+++++.
T Consensus 115 ---------~ia~~~~~~~~~~N~~~lGa~~~~~~l~~e~~~~~i~~~ 153 (173)
T PF01558_consen 115 ---------EIAKELGGNPRFANMVMLGALAKLLGLPLESLEEAIKER 153 (173)
T ss_dssp ---------HHHHHTTS-GGGHHHHHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred ---------HHHHhhhcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 011112233556788888888888999999999988763
No 337
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=30.47 E-value=1.7e+02 Score=28.99 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEE
Q 013570 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425 (440)
Q Consensus 369 np~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~ 425 (440)
+|+.++++++.++ +++.+|.+. +.+.++++++.+.+++...+...
T Consensus 138 D~evleaale~~~-----g~~pLInSa-------t~en~~~i~~lA~~y~~~Vva~s 182 (319)
T PRK04452 138 DAEVLEKVAEAAE-----GERCLLGSA-------EEDNYKKIAAAAMAYGHAVIAWS 182 (319)
T ss_pred CHHHHHHHHHHhC-----CCCCEEEEC-------CHHHHHHHHHHHHHhCCeEEEEc
Confidence 7999999999985 444566655 34468999999999976555544
No 338
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=30.32 E-value=57 Score=29.74 Aligned_cols=29 Identities=34% Similarity=0.343 Sum_probs=21.7
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH--HhCCCCe
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL--ESLGVNV 161 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL--~~~g~~~ 161 (440)
.+++|||-| ||||...+|.... ...|..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v 58 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPV 58 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 689999987 6999999998654 3355433
No 339
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=30.19 E-value=49 Score=29.29 Aligned_cols=24 Identities=38% Similarity=0.278 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..+..|+|-| ||||+...|..+|-
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4577888766 79999999999993
No 340
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=30.15 E-value=56 Score=37.55 Aligned_cols=30 Identities=33% Similarity=0.268 Sum_probs=23.1
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeEE
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
++.|||- .||||+...+..++++.|+++..
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~ 395 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRG 395 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4445554 38999999999999888988753
No 341
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=30.14 E-value=68 Score=39.21 Aligned_cols=39 Identities=36% Similarity=0.432 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHH
Q 013570 114 TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 114 ~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL 154 (440)
....|..|+.-.+. ..+.-.||=||| ||||+..+|+.+|
T Consensus 450 sl~lleql~~~Iq~-nep~LLVGeTGt-GKTT~IQ~La~~l 488 (4600)
T COG5271 450 SLWLLEQLLWNIQN-NEPTLLVGETGT-GKTTMIQYLALKL 488 (4600)
T ss_pred HHHHHHHHHHHhcc-CCceEEEecCCC-chhhHHHHHHHHh
Confidence 34555566654444 445557899998 9999999999999
No 342
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=30.05 E-value=2.9e+02 Score=25.54 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=45.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhccc------CCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 360 KIVNDAYNANPISTRAAIDLLKDIA------CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 360 ~ii~Dsyahnp~s~~~al~~l~~~~------~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.+|-|- =.+.+.++++|+.+.... +...+++.+|++-+.|..+.+--+.+-+...+ -..+.+.|++-.
T Consensus 2 ~vIGDI-HG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~ 75 (222)
T cd07413 2 DFIGDI-HGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEF 75 (222)
T ss_pred EEEEec-cCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcH
Confidence 467773 347889999988874321 12457888899999998877665555443322 256777888664
No 343
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.95 E-value=1.8e+02 Score=29.00 Aligned_cols=110 Identities=11% Similarity=0.036 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCCC-HH---HHHHHHHHHhcccCCCcEEEEE
Q 013570 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNAN-PI---STRAAIDLLKDIACNGKRVVIL 393 (440)
Q Consensus 320 laAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsyahn-p~---s~~~al~~l~~~~~~~r~i~Vl 393 (440)
..|-.+|..+|++...+ -+.+|.-=+-..++... ++.+ +|+.+.... -+ .+--+++++++.. .+|+++|+
T Consensus 32 ~la~~ia~~lg~~l~~~--~~~~FpDGE~~v~i~~~vrg~~V-~ivqs~~~p~nd~l~eLll~~~alr~~g-a~ri~~Vi 107 (330)
T PRK02812 32 ALAQEVARYLGMDLGPM--IRKRFADGELYVQIQESIRGCDV-YLIQPTCAPVNDHLMELLIMVDACRRAS-ARQITAVI 107 (330)
T ss_pred HHHHHHHHHhCCCceee--EEEECCCCCEEEEeCCCCCCCEE-EEECCCCCCccHHHHHHHHHHHHHHHhC-CceEEEEE
Confidence 45566777789876655 35667632323333221 2333 444433221 13 3334456676655 56778887
Q ss_pred cCCCC-CChh-----cHHHHHHHHHHHHHcCCCEEEEEcCchhhhh
Q 013570 394 GDMLE-LGST-----ERESHEKILSYCCDACIDLIGLVGDRVVVQC 433 (440)
Q Consensus 394 G~m~e-~G~~-----~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~ 433 (440)
--|.= .-++ +.---+-+++.+...++|+|+++..+.....
T Consensus 108 PYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~ 153 (330)
T PRK02812 108 PYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHSAQIQ 153 (330)
T ss_pred ecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHc
Confidence 55320 0011 1112255888898888999999998875433
No 344
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=29.90 E-value=37 Score=33.86 Aligned_cols=110 Identities=20% Similarity=0.227 Sum_probs=66.3
Q ss_pred eeecCCCCC----ccCHHHHHHHhCCeecccCC-----Cc-----eEEee--CCccccCCCCEEEEecCccCCcccchHH
Q 013570 17 TFRCPSNSP----IWTINEIAESVNGKILKWGP-----PG-----IICTD--TRILAPNKNQWFFAITGQHFDAHEFISP 80 (440)
Q Consensus 17 ~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~-----i~-----~i~~d--sr~v~~~~g~lFval~G~~~dg~~~i~~ 80 (440)
|+|++..+. .+|.+|++++++|+.++... ++ ..+.| -|.+.| |.|.+. |.+.+-|. .
T Consensus 57 TvRIekk~k~~Ie~LTf~Eiv~iidgqVLgG~~Gl~k~~sKFvIGAMt~~~i~rY~~~--g~LlIV--GnR~~iq~---l 129 (432)
T COG4109 57 TVRIEKKGKKNIERLTFAEIVNIIDGQVLGGRAGLEKELSKFVIGAMTLDAILRYLDP--GGLLIV--GNREDIQL---L 129 (432)
T ss_pred eEEEEeccchhhhhhhHHHHHHhhccceeccccchhhhhhhhhhhhhhHHHHHhhcCC--CceEEE--ecHHHHHH---H
Confidence 456655544 37999999999999877421 33 33444 477889 999865 88877554 5
Q ss_pred HHhcCCCeEEEeccccCCCCceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCC
Q 013570 81 ELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLG 158 (440)
Q Consensus 81 A~~~~Ga~~vv~~~~~~~~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g 158 (440)
|++ +|++..|+- ++|+.+-...||. ...+|++. -+.--=|++.||.+.|...-
T Consensus 130 AL~-~~~AVLvTG-----------------GF~~s~evi~lAn-----e~~lPvls--tsYDTFTVAtmIN~Al~n~l 182 (432)
T COG4109 130 ALE-NGNAVLVTG-----------------GFDVSDEVIKLAN-----EKGLPVLS--TSYDTFTVATMINKALSNQL 182 (432)
T ss_pred HHh-cCCeEEEeC-----------------CCCccHHHHHhhc-----ccCCceEE--ecccceeHHHHHHHHHHHhh
Confidence 788 887555542 2233333344554 23344432 12222367788888884433
No 345
>PRK00110 hypothetical protein; Validated
Probab=29.86 E-value=2.6e+02 Score=26.53 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCCCCC--CCceeEEe-e---cCCeEEEEecCCCCHHHHHHHHHHH
Q 013570 318 NACAAAAVATLFGVSLAQVGISLSNFSPV--QMRSELLV-S---RSGIKIVNDAYNANPISTRAAIDLL 380 (440)
Q Consensus 318 NalaAia~~~~lg~~~~~i~~~L~~~~~~--~gR~e~~~-~---~~~~~ii~Dsyahnp~s~~~al~~l 380 (440)
.+..|+..|...++|.+.|..+|++..+- ..-++.+. . .+|+.+|+++.-.|..-..+-++.+
T Consensus 48 ~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~gP~GvaiiVe~lTDN~nRt~~~vR~~ 116 (245)
T PRK00110 48 RLRLAIDKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTAAEVRHA 116 (245)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEEcCCCeEEEEEEecCCHHHHHHHHHHH
Confidence 35677888899999999999999987752 22222222 1 4789999998888887666666654
No 346
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=29.77 E-value=97 Score=30.39 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=24.7
Q ss_pred HhhcCCCCCcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 124 YARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 124 ~~~~p~~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..|. -.+...|.++| -.||||+..+|+..| |+..+
T Consensus 126 ~~~~-~~~~~~I~l~G~~GsGKStvg~~La~~L---g~~~i 162 (309)
T PRK08154 126 AGRR-AARRRRIALIGLRGAGKSTLGRMLAARL---GVPFV 162 (309)
T ss_pred hhhh-ccCCCEEEEECCCCCCHHHHHHHHHHHc---CCCEE
Confidence 3444 33456788888 468999999999887 55543
No 347
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=29.65 E-value=2.5e+02 Score=30.97 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=52.3
Q ss_pred cCHHHHHHHhCCeecccCC-----CceEEe-------eCCccccCCCCEEEEecCccCCcccchHHHHhcC-----CCeE
Q 013570 27 WTINEIAESVNGKILKWGP-----PGIICT-------DTRILAPNKNQWFFAITGQHFDAHEFISPELYGK-----GCVG 89 (440)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~~-----i~~i~~-------dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~-----Ga~~ 89 (440)
.++.+|++.++|+++...+ +..+.+ -.+.+++ |++.+. +|.+.| -+..|++ . |+++
T Consensus 202 ~t~~~i~~~L~~~vl~~~~~~~~~v~~v~vgAm~~~~~~~~l~~--~~lVIt-~gdR~D---i~l~al~-~~~~~~~~a~ 274 (684)
T PRK05632 202 PRVIDIAKHLGATVLNEGDILTRRVKSVTVCARSIPNMLEHLKP--GSLVVT-PGDRSD---VILAALL-AAMNGPPIAG 274 (684)
T ss_pred CCHHHHHHHcCCEEEcCcccccceeeeEEEEecchHHHHHhccC--CcEEEe-CCChHH---HHHHHHH-hcccCCCceE
Confidence 4889999999999876432 444422 2345567 999875 687755 4445566 5 6677
Q ss_pred EEeccccCC-------------CCceEEEEcCCCCccHHHHHHHHHHH
Q 013570 90 VIGNQVCNN-------------WDKGFVQVEGNGNVNTLNSLVNMACY 124 (440)
Q Consensus 90 vv~~~~~~~-------------~~~~~i~V~~~~~~d~~~al~~la~~ 124 (440)
+|....... .++|+|.++ .|+..+...+.++
T Consensus 275 lIlTgg~~~~~~v~~l~~~a~~~~ipVl~t~----~dT~~ta~~i~~~ 318 (684)
T PRK05632 275 LLLTGGYEPDPRIAKLCEGAFETGLPVLSVD----TNTYQTALRLQSF 318 (684)
T ss_pred EEEcCCCCCCHHHHHHHhhcccCCCCEEEec----CCHHHHHHHHHHh
Confidence 665433210 146666665 1465555555543
No 348
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=29.59 E-value=99 Score=27.62 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=19.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
...++|+|.+ ||||+...|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4678888865 89999888887773
No 349
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=29.56 E-value=2e+02 Score=28.70 Aligned_cols=23 Identities=39% Similarity=0.352 Sum_probs=17.2
Q ss_pred CcEEEEeCCCC--hHHHHHHHHHHH
Q 013570 132 GVLVGVTGSVG--KSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTnG--KTTT~~ml~~iL 154 (440)
...|.|+|..| ||||...+..-+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35788998766 999987665544
No 350
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.52 E-value=4.8e+02 Score=26.50 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=21.1
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH-hCC-CCe
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE-SLG-VNV 161 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~-~~g-~~~ 161 (440)
..++++.|.+ |||||...|+.-+. ..| .++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V 170 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKV 170 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeE
Confidence 4577777765 69999999987653 345 344
No 351
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=29.52 E-value=39 Score=30.64 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|.| ||||...+|..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35789999997 8999999988776
No 352
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=29.38 E-value=6.4e+02 Score=25.90 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHhhcCC---CCCcEEEEeCC--CChHHHHHHHHHHHH--hCCCCeEEecCcCCCCcchhhHH--hcccC
Q 013570 113 NTLNSLVNMACYARNSR---FSGVLVGVTGS--VGKSTTKSMIALALE--SLGVNVFQSYGNWNNRVGVALSL--IGIDR 183 (440)
Q Consensus 113 d~~~al~~la~~~~~p~---~~~~vI~VTGT--nGKTTT~~ml~~iL~--~~g~~~~~t~g~~n~~~g~p~~l--~~~~~ 183 (440)
...+++..+-.+.-. . .+.++|+.-|. .|||||..=|++.+. ....+| +.+..-+-++|-.--| ..---
T Consensus 182 ~~~~~l~~~~~~~~~-~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kV-aiITtDtYRIGA~EQLk~Ya~im 259 (407)
T COG1419 182 YFSEKLRKLLLSLIE-NLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKV-AIITTDTYRIGAVEQLKTYADIM 259 (407)
T ss_pred hHHHHHHHHHHhhcc-ccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcce-EEEEeccchhhHHHHHHHHHHHh
Confidence 555666555543322 3 34677777776 479999999999885 333444 2222223356532111 11012
Q ss_pred CCcEEEEeeccCCcchHH-hhccccCCcEEEEcCCChhhhc
Q 013570 184 AVDIAVLEMGMSGKGEIL-ELARMARPEIRVVLNVGDSHLE 223 (440)
Q Consensus 184 ~~~~~VlE~g~~~~g~~~-~~~~~~~p~vaviTNi~~dHl~ 223 (440)
++++.|..-. -++. .+..+-+.|+..+=.+|+.|.|
T Consensus 260 ~vp~~vv~~~----~el~~ai~~l~~~d~ILVDTaGrs~~D 296 (407)
T COG1419 260 GVPLEVVYSP----KELAEAIEALRDCDVILVDTAGRSQYD 296 (407)
T ss_pred CCceEEecCH----HHHHHHHHHhhcCCEEEEeCCCCCccC
Confidence 4555555432 1222 2222336688888888887766
No 353
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=29.32 E-value=74 Score=28.36 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|.|.|- +||||++.+|+..| |++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~v 29 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLV 29 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCcee
Confidence 4666664 68999999999988 66654
No 354
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=29.29 E-value=45 Score=35.30 Aligned_cols=25 Identities=40% Similarity=0.311 Sum_probs=20.4
Q ss_pred CCCCcEEEEeC--CCChHHHHHHHHHH
Q 013570 129 RFSGVLVGVTG--SVGKSTTKSMIALA 153 (440)
Q Consensus 129 ~~~~~vI~VTG--TnGKTTT~~ml~~i 153 (440)
+..+|.|.|.| |.||||+.+|+++.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHh
Confidence 34578787877 89999999999874
No 355
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=29.16 E-value=83 Score=30.94 Aligned_cols=47 Identities=23% Similarity=0.124 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|..-+|..+..+ + ..+.|.+.|.| +|||||.+..|-+-.-+.++++.
T Consensus 83 Nlhf~lek~rm~--n-~e~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~pl 131 (424)
T COG5623 83 NLHFFLEKRRMF--N-YEKGPTVMVVGGSQNGKTSFCFTLISYALKLGKKPL 131 (424)
T ss_pred hHHHHHHhhccc--c-cccCCEEEEECCCcCCceeHHHHHHHHHHHhcCCce
Confidence 666666666532 1 12367777777 69999998655544436677764
No 356
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=29.09 E-value=78 Score=28.12 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.7
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHhccc
Q 013570 356 RSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (440)
Q Consensus 356 ~~~~~ii~Dsyahnp~s~~~al~~l~~~~ 384 (440)
++.+.+||| -..+-.++.++.+.+++..
T Consensus 108 g~~VlIVDD-vi~TG~Tl~~a~~~l~~~G 135 (173)
T TIGR00336 108 GDKVVVVED-VITTGTSILEAVEIIQAAG 135 (173)
T ss_pred CCEEEEEec-cccChHHHHHHHHHHHHcC
Confidence 467888888 7889999999999998753
No 357
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=29.00 E-value=97 Score=31.63 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCChhcH-HHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 389 RVVILGDMLELGSTER-ESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 389 ~i~VlG~m~e~G~~~~-~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
+.+++|+... |.+.. .-.+.|++.+.+.++|.|+.+|+++
T Consensus 28 ~F~~vGDwG~-g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF 68 (394)
T PTZ00422 28 RFASLGNWGT-GSKQQKLVASYLKQYAKNERVTFLVSPGSNF 68 (394)
T ss_pred EEEEEecCCC-CchhHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 6899999885 54444 4467799998899999999999985
No 358
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.87 E-value=40 Score=30.74 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|-| ||||...+|..++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35689999997 79999888887763
No 359
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=28.80 E-value=64 Score=33.86 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=23.1
Q ss_pred CCcEEEEeCCC---ChHHHHHHHHHHHHhC
Q 013570 131 SGVLVGVTGSV---GKSTTKSMIALALESL 157 (440)
Q Consensus 131 ~~~vI~VTGTn---GKTTT~~ml~~iL~~~ 157 (440)
+++.|-||||. |||+++..|.+.|++.
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 46779999885 9999999999999764
No 360
>PRK07261 topology modulation protein; Provisional
Probab=28.78 E-value=61 Score=28.69 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.3
Q ss_pred EEEeCCC--ChHHHHHHHHHHH
Q 013570 135 VGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 135 I~VTGTn--GKTTT~~ml~~iL 154 (440)
|.|+|.. ||||.+..|...+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5566554 8999999987766
No 361
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.76 E-value=8.7e+02 Score=27.35 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=21.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHH--HHHHhCCCCe
Q 013570 132 GVLVGVTGSV--GKSTTKSMIA--LALESLGVNV 161 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~--~iL~~~g~~~ 161 (440)
.+++.|||.| ||||+...+. .+|.+.|..+
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~v 360 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPI 360 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCc
Confidence 3578999977 8999887765 4465667554
No 362
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=28.66 E-value=1.1e+02 Score=27.51 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=29.4
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcC
Q 013570 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395 (440)
Q Consensus 357 ~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~ 395 (440)
++..|+|| -..+-..++.+++.+++...+.+.++|+-+
T Consensus 142 K~cvIVDD-vittG~Ti~E~Ie~lke~g~kpv~v~VL~d 179 (203)
T COG0856 142 KRCVIVDD-VITTGSTIKETIEQLKEEGGKPVLVVVLAD 179 (203)
T ss_pred ceEEEEec-ccccChhHHHHHHHHHHcCCCcEEEEEEEc
Confidence 45667777 788999999999999998744456667765
No 363
>PRK13975 thymidylate kinase; Provisional
Probab=28.40 E-value=62 Score=28.92 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALE 155 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~ 155 (440)
.+|.|.|. .||||.+.+|+.-|.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46888886 589999999999993
No 364
>PRK06217 hypothetical protein; Validated
Probab=28.36 E-value=58 Score=28.98 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.1
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 013570 134 LVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.|.|+|. .||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 4667764 58999999999988
No 365
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=28.33 E-value=60 Score=37.67 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=24.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+++.|+|- .||||+...+..+++..|+++.+
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g 430 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVG 430 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45555554 38999999999999999998854
No 366
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=28.17 E-value=50 Score=30.34 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..++++.|-| ||||+..+|..++.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 5689999997 79999999988774
No 367
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.97 E-value=3.2e+02 Score=27.05 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCC----CHHHHHHHHHHHhcccCCCcEEEEEc
Q 013570 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNA----NPISTRAAIDLLKDIACNGKRVVILG 394 (440)
Q Consensus 321 aAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsyah----np~s~~~al~~l~~~~~~~r~i~VlG 394 (440)
+|-.+|..||++...+ .+..|..=+-..++... ++.+.+|-. ..+ +--.+--+++++++.. .+++++|+-
T Consensus 17 la~~ia~~lg~~l~~~--~~~~FpdGE~~v~i~~~vrg~dV~iv~s-~~~~~nd~lmelll~~~alr~~~-a~~i~~V~P 92 (320)
T PRK02269 17 LAEKVAQEIGIELGKS--SVRQFSDGEIQVNIEESIRGHHVFILQS-TSSPVNDNLMEILIMVDALKRAS-AESINVVMP 92 (320)
T ss_pred HHHHHHHHhCCceeee--EEEECCCCCEEEEECCCCCCCEEEEEec-CCCCccchHHHHHHHHHHHHHhC-CCeEEEEEe
Confidence 4556677788766544 34556531222222111 234445544 322 2233444556777765 567788875
Q ss_pred CCCC-CChh-----cHHHHHHHHHHHHHcCCCEEEEEcCchhhhh
Q 013570 395 DMLE-LGST-----ERESHEKILSYCCDACIDLIGLVGDRVVVQC 433 (440)
Q Consensus 395 ~m~e-~G~~-----~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~ 433 (440)
-+.- .-++ +.---+-+++.+...++|+|+++..+.....
T Consensus 93 Yl~YaRQDr~~~~~e~isak~~a~ll~~~g~d~vit~D~H~~~~~ 137 (320)
T PRK02269 93 YYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQ 137 (320)
T ss_pred ccccchhhcccCCCCCchHHHHHHHHhhcCCCEEEEECCChHHHh
Confidence 4210 0000 1112356888898888999999998876433
No 368
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=27.95 E-value=55 Score=31.08 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 139 GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 139 GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|-.||||++.-++..+.+.|.+|.
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vL 32 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVL 32 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCce
Confidence 667999999999999988998875
No 369
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=27.32 E-value=41 Score=32.81 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=22.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCC
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLG 158 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g 158 (440)
..++|+.|-| ||||+-.+|..+++...
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~ 59 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTS 59 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence 5699999999 59999999999995443
No 370
>PRK13976 thymidylate kinase; Provisional
Probab=27.31 E-value=66 Score=29.66 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=21.4
Q ss_pred EEEeCC--CChHHHHHHHHHHHHhC-C-CCeEEe
Q 013570 135 VGVTGS--VGKSTTKSMIALALESL-G-VNVFQS 164 (440)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~-g-~~~~~t 164 (440)
|+|-|- .||||.+.+|+..|+.. | .++..+
T Consensus 3 Iv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~ 36 (209)
T PRK13976 3 ITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT 36 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence 444443 59999999999999775 5 465433
No 371
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=27.25 E-value=1.6e+02 Score=28.51 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=49.3
Q ss_pred HHHHcCCCHHHHHHHhcCCCCC----CCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcC
Q 013570 325 VATLFGVSLAQVGISLSNFSPV----QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395 (440)
Q Consensus 325 ~~~~lg~~~~~i~~~L~~~~~~----~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~ 395 (440)
-....|-++.++.+-|+.|+.. ..||-+++.+ +. ++.| ....+++...|..|+.+. -+.|+|.|+
T Consensus 8 ~~~~~~~~~~e~~~~l~~f~~~~~~~~~~f~VIK~G-G~-~~~~--~~~~~~l~~dla~L~~lG--l~~VlVHGg 76 (271)
T cd04236 8 FLHQKGGDPREARYWLTQFQIAMPNDWPAFAVLEVD-HS-VFRS--LEMVQSLSFGLAFLQRMD--MKLLVVMGL 76 (271)
T ss_pred HHHHhCCCHHHHHHHHHHhhccCCCCCCCEEEEEEC-hh-hhcC--chhHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 3456789999999999999976 4799999984 43 3434 234678888888887763 688999987
No 372
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=27.16 E-value=1.6e+02 Score=27.16 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=47.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 358 ~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.+.+|-| -=.+-++++++|+.++..+ ...+++++|++-+.|..+.+ +.+.+.+. ..+.+.|++-.
T Consensus 18 ri~vigD-IHG~~~~L~~lL~~i~~~~-~~D~li~lGDlvDrGp~s~~----vl~~l~~~--~~~~v~GNHE~ 82 (218)
T PRK11439 18 HIWLVGD-IHGCFEQLMRKLRHCRFDP-WRDLLISVGDLIDRGPQSLR----CLQLLEEH--WVRAVRGNHEQ 82 (218)
T ss_pred eEEEEEc-ccCCHHHHHHHHHhcCCCc-ccCEEEEcCcccCCCcCHHH----HHHHHHcC--CceEeeCchHH
Confidence 5678999 5558999999999986432 35678889999999988765 44444443 34677888654
No 373
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.06 E-value=7.2e+02 Score=26.71 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhC--CCCe
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALESL--GVNV 161 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~--g~~~ 161 (440)
+..+|+++|- .|||||...|...+... +.++
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkV 383 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDV 383 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCce
Confidence 3568888864 58999998888776443 3455
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=27.03 E-value=63 Score=29.37 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.9
Q ss_pred EEEEeCCC--ChHHHHHHHHHHH
Q 013570 134 LVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+++|+|.| ||||+..+|..++
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 78999998 7999999998887
No 375
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.89 E-value=45 Score=31.87 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|.| ||||...+|..++.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999997 89999999988773
No 376
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=26.89 E-value=40 Score=33.04 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.7
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHh
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (440)
..++|+.|.| ||||+..+|..+++.
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999998 799999999998843
No 377
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=26.80 E-value=39 Score=30.29 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=17.5
Q ss_pred cEEEEeC--CCChHHHHHHHHHHH
Q 013570 133 VLVGVTG--SVGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTG--TnGKTTT~~ml~~iL 154 (440)
++|-++| |.||||++..|...|
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~ 25 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERL 25 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhC
Confidence 3566654 789999999999988
No 378
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.77 E-value=3.2e+02 Score=28.85 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=15.8
Q ss_pred EEEEeCCC--ChHHHHHHHHHHH
Q 013570 134 LVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL 154 (440)
-+-.+|.. ||||++..++..|
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHH
Confidence 34455543 7999999999988
No 379
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=26.75 E-value=1e+02 Score=26.19 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=36.0
Q ss_pred CCccccCCCCEEEEecCccC---CcccchHHHHhcCCCeEEEeccccC-------CCCceEEEEc
Q 013570 53 TRILAPNKNQWFFAITGQHF---DAHEFISPELYGKGCVGVIGNQVCN-------NWDKGFVQVE 107 (440)
Q Consensus 53 sr~v~~~~g~lFval~G~~~---dg~~~i~~A~~~~Ga~~vv~~~~~~-------~~~~~~i~V~ 107 (440)
..++++ |++.|+ |.+| .-++++.-|++..|..+||.+.--. ..++|.|.++
T Consensus 40 ~~~v~~--gdilVa--G~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~ 100 (129)
T cd01674 40 STKTKQ--GDILVS--GFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELP 100 (129)
T ss_pred hhcCCC--CCEEEe--CCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEech
Confidence 456889 999988 6655 3456777778778999999875311 1267778777
No 380
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=26.74 E-value=49 Score=29.66 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=21.3
Q ss_pred CCcEEEEeCCCC--hHHHHHHHHHHHHh
Q 013570 131 SGVLVGVTGSVG--KSTTKSMIALALES 156 (440)
Q Consensus 131 ~~~vI~VTGTnG--KTTT~~ml~~iL~~ 156 (440)
+..+++|.|-|| |||...+|..+++-
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 367899999875 99999999888743
No 381
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=26.69 E-value=79 Score=33.05 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=25.6
Q ss_pred cEEEEeC----CCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTG----TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.|-||| |-||..|+.-|..+|++.|++|.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt 35 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 35 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEE
Confidence 3566666 78999999999999999999973
No 382
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=26.63 E-value=45 Score=29.81 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..+++|+|-| ||||...+|..++.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999997 69999888887763
No 383
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=26.52 E-value=1.8e+02 Score=28.39 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHhhc--CCCCCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 113 NTLNSLVNMACYARN--SRFSGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 113 d~~~al~~la~~~~~--p~~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
|+.+.=..+|...|. ...+..+|+|+|++ ||||+...+...|
T Consensus 83 ~il~~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 83 DVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455554556653322 14567899999986 6888877776666
No 384
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=26.36 E-value=91 Score=28.74 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=20.5
Q ss_pred cEEEEeCCC--ChHHHHHHHH--HHHHhCCCCe
Q 013570 133 VLVGVTGSV--GKSTTKSMIA--LALESLGVNV 161 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~--~iL~~~g~~~ 161 (440)
+++.|||.| ||||.-..+. .++.+.|.-+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 789999998 5888777776 4454555543
No 385
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.32 E-value=95 Score=33.06 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
++...|..++.+ .|.....+.-+||- +|||||...|+..| |+.+
T Consensus 93 eVk~WL~~~~~~--~~~l~~~iLLltGPsGcGKSTtvkvLskel---g~~~ 138 (634)
T KOG1970|consen 93 EVKQWLKQVAEF--TPKLGSRILLLTGPSGCGKSTTVKVLSKEL---GYQL 138 (634)
T ss_pred HHHHHHHHHHHh--ccCCCceEEEEeCCCCCCchhHHHHHHHhh---Ccee
Confidence 777777744433 34677789999996 57999999999999 6655
No 386
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=26.27 E-value=49 Score=28.65 Aligned_cols=19 Identities=42% Similarity=0.426 Sum_probs=14.9
Q ss_pred EEeCC--CChHHHHHHHHHHH
Q 013570 136 GVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 136 ~VTGT--nGKTTT~~ml~~iL 154 (440)
.++|- .||||++..|+..|
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 34554 39999999999887
No 387
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=26.26 E-value=62 Score=29.56 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=20.6
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhC
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESL 157 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~ 157 (440)
...+||-|-| ||+|.+.||+-+..-.
T Consensus 39 ~QTlaiIG~NGSGKSTLakMlaGmi~PT 66 (267)
T COG4167 39 GQTLAIIGENGSGKSTLAKMLAGMIEPT 66 (267)
T ss_pred CcEEEEEccCCCcHhHHHHHHhcccCCC
Confidence 4578888876 6999999999888433
No 388
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=26.20 E-value=76 Score=28.28 Aligned_cols=23 Identities=35% Similarity=0.271 Sum_probs=19.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|+|.+ ||||+...|..++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567888875 7999999999988
No 389
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=25.97 E-value=80 Score=29.06 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.6
Q ss_pred eCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 138 TGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.|-.||||++.-++..+.+.|.++.
T Consensus 7 ~~g~Gkt~~~~~la~~~a~~g~~~~ 31 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKKVL 31 (217)
T ss_pred CCCchHHHHHHHHHHHHHHCCCcEE
Confidence 3557999999999999988898875
No 390
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=25.69 E-value=96 Score=29.53 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=35.7
Q ss_pred EEEEeC----CCChHHHHHHHHHHHHhCCCCeEEe-cC-cCCCCcchhhHHhcccCCCcEEEEeecc
Q 013570 134 LVGVTG----SVGKSTTKSMIALALESLGVNVFQS-YG-NWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (440)
Q Consensus 134 vI~VTG----TnGKTTT~~ml~~iL~~~g~~~~~t-~g-~~n~~~g~p~~l~~~~~~~~~~VlE~g~ 194 (440)
-|-||| +-||..|++-+..+|++.|++|..- .. ..|-.-| ++.- -+.-|+.|.|=|.
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~G---tmsP-~~HGEvfVt~DG~ 64 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPG---TMSP-YQHGEVFVTDDGA 64 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCC---CCCC-ccceeEEEccCCC
Confidence 355666 5799999999999999999998421 11 2233323 1111 1235778877653
No 391
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=25.59 E-value=1.2e+02 Score=27.54 Aligned_cols=21 Identities=48% Similarity=0.469 Sum_probs=15.0
Q ss_pred EEEEeCCC--ChHHHHHHHHHHH
Q 013570 134 LVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+|.|+|.. ||||+...+...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57788775 5999988655444
No 392
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=25.57 E-value=61 Score=29.95 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|.| ||||...+|..+++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35689999987 79999888887763
No 393
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=25.49 E-value=3.4e+02 Score=26.60 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCC-C--HHHHHHHHHHHhcccCCCcEEEEEcC
Q 013570 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNA-N--PISTRAAIDLLKDIACNGKRVVILGD 395 (440)
Q Consensus 321 aAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsyah-n--p~s~~~al~~l~~~~~~~r~i~VlG~ 395 (440)
.|-.+|..+|++...+ .+..|.-=+-..++... +..+.++-..+.. | --.+--+++++++.. .+++++|+--
T Consensus 3 lA~~ia~~lg~~l~~~--~~~~FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~-a~~i~~ViPY 79 (302)
T PLN02369 3 LSQEIACYLGLELGKI--TIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRAS-AKRITAVIPY 79 (302)
T ss_pred HHHHHHHHhCCceeee--EEEECCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcC-CCeEEEEeec
Confidence 3555677788776644 45666532222222111 2445455443211 2 223344456677665 5677788755
Q ss_pred CCC-CChh-----cHHHHHHHHHHHHHcCCCEEEEEcCchhhhh
Q 013570 396 MLE-LGST-----ERESHEKILSYCCDACIDLIGLVGDRVVVQC 433 (440)
Q Consensus 396 m~e-~G~~-----~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~ 433 (440)
|.= .-++ +.---+.+++.+...++|+|+++..+.....
T Consensus 80 l~YsRQDr~~~~~e~isak~va~lL~~~g~d~vi~vDlHs~~i~ 123 (302)
T PLN02369 80 FGYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSM 123 (302)
T ss_pred ccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHh
Confidence 320 0000 1112245888888888999999998875433
No 394
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=25.46 E-value=3.9e+02 Score=25.47 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=44.4
Q ss_pred CCEEEEecCccCCccc---chHHHHhcCCCeEEEeccccCC--------------CCceEEEEcCCCCccHHHHHHHHHH
Q 013570 61 NQWFFAITGQHFDAHE---FISPELYGKGCVGVIGNQVCNN--------------WDKGFVQVEGNGNVNTLNSLVNMAC 123 (440)
Q Consensus 61 g~lFval~G~~~dg~~---~i~~A~~~~Ga~~vv~~~~~~~--------------~~~~~i~V~~~~~~d~~~al~~la~ 123 (440)
.++++.+.|-. |.|. -+..|-. -|+.+||..+...+ ..+|++.+. |....+..+.+
T Consensus 108 ~~l~lvLd~V~-DP~NlGaIiRtA~a-~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~-----n~~~~~~~~~~ 180 (260)
T COG0566 108 QPLLLVLDGVT-DPHNLGAIIRTADA-FGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVT-----NLARTLLELLK 180 (260)
T ss_pred CCEEEEEecCc-CCcchhhHHhhHHH-hCCCEEEECCCccCCccceeEEecCChheeceeEEEe-----ccHHHHHHHHH
Confidence 47899998776 5554 3666777 89999999775332 157888888 64444433332
Q ss_pred HhhcCCCCCcEEEEeCCC
Q 013570 124 YARNSRFSGVLVGVTGSV 141 (440)
Q Consensus 124 ~~~~p~~~~~vI~VTGTn 141 (440)
.....+||.+.+.
T Consensus 181 -----~~G~~v~~t~~~~ 193 (260)
T COG0566 181 -----EAGFWVVATSLDG 193 (260)
T ss_pred -----HcCeEEEEECCCC
Confidence 2335677776665
No 395
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=25.38 E-value=1.6e+02 Score=24.33 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcccCCCcEEEEEcCCCCCChhc--HHHHHHHHHHHHHcCCCE
Q 013570 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTE--RESHEKILSYCCDACIDL 421 (440)
Q Consensus 371 ~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~--~~~~~~l~~~~~~~~~d~ 421 (440)
..++..++.+......+++++|||. .|... ....+.+-+.+.+.+...
T Consensus 64 ~~~~~f~~~l~~~~~~gk~~~vfgt---~g~~~~f~~~~~~~~~~l~~~g~~~ 113 (140)
T TIGR01753 64 DDFEPFFEELEDIDLGGKKVALFGS---GDWGYEFCEAVDDWEERLKEAGATI 113 (140)
T ss_pred chHHHHHHHhhhCCCCCCEEEEEec---CCCCchhhHHHHHHHHHHHHCCCEE
Confidence 6888888888654335788999986 34332 345566667776665443
No 396
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=25.27 E-value=80 Score=30.45 Aligned_cols=64 Identities=25% Similarity=0.276 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCC-----------CCCCCceeEE-------eecCCeEEEEecCCCCHHHHHHHHHHH
Q 013570 319 ACAAAAVATLFGVSLAQVGISLSNF-----------SPVQMRSELL-------VSRSGIKIVNDAYNANPISTRAAIDLL 380 (440)
Q Consensus 319 alaAia~~~~lg~~~~~i~~~L~~~-----------~~~~gR~e~~-------~~~~~~~ii~Dsyahnp~s~~~al~~l 380 (440)
...|.++|..||++.--+++. .+. .+..+|.|.+ ..+..+.+||| .-.+-.++.++++.+
T Consensus 140 IpLA~avA~~L~vp~vivRK~-~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDD-v~~TGgTi~a~i~Ll 217 (268)
T TIGR01743 140 IPLAYAVASVLNVPLVIVRKD-SKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDD-FMKAGGTINGMINLL 217 (268)
T ss_pred HHHHHHHHHHHCCCEEEEEEC-CCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEee-ecccCHHHHHHHHHH
Confidence 456777888888875433322 111 1223344432 23567888999 889999999999999
Q ss_pred hccc
Q 013570 381 KDIA 384 (440)
Q Consensus 381 ~~~~ 384 (440)
++..
T Consensus 218 ~e~G 221 (268)
T TIGR01743 218 DEFD 221 (268)
T ss_pred HHCC
Confidence 8753
No 397
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=25.22 E-value=1.2e+02 Score=28.81 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=20.4
Q ss_pred CCCCcEEEEeC--CCChHHHHHHHHHH
Q 013570 129 RFSGVLVGVTG--SVGKSTTKSMIALA 153 (440)
Q Consensus 129 ~~~~~vI~VTG--TnGKTTT~~ml~~i 153 (440)
...+|.|+|.| +.||||+.+.|...
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 46788999999 78999998877754
No 398
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=25.10 E-value=85 Score=29.20 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+.+|.|-| ||||+..+|..+|
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999998 7999999999887
No 399
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=25.09 E-value=2.4e+02 Score=25.23 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=15.8
Q ss_pred EEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEc
Q 013570 361 IVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394 (440)
Q Consensus 361 ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG 394 (440)
++.|-..++|.++..+.+.+++. +=++-++|
T Consensus 113 l~sd~~~~~~~~~~~~~~~l~~~---~I~v~~Ig 143 (183)
T cd01453 113 IFSSLSTCDPGNIYETIDKLKKE---NIRVSVIG 143 (183)
T ss_pred EEcCCCcCChhhHHHHHHHHHHc---CcEEEEEE
Confidence 34442334566666666666542 33454555
No 400
>PRK07078 hypothetical protein; Validated
Probab=25.02 E-value=1.2e+02 Score=33.92 Aligned_cols=41 Identities=29% Similarity=0.243 Sum_probs=26.3
Q ss_pred cHHHHHHHHHH--HhhcCCCC-Cc-EEEEeCCCChHHHHHHHHHHH
Q 013570 113 NTLNSLVNMAC--YARNSRFS-GV-LVGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 113 d~~~al~~la~--~~~~p~~~-~~-vI~VTGTnGKTTT~~ml~~iL 154 (440)
+..+.|+++.- +...-..+ +. ++| +|.|||||...+|..+|
T Consensus 471 el~~fLq~~~GY~Ltg~~~~q~~~~l~G-~G~NGKSt~l~~l~~ll 515 (759)
T PRK07078 471 ELQAYLQRMAGYALTGSTSEHALFFLYG-TGANGKSVFVNTLATIL 515 (759)
T ss_pred HHHHHHHHHhhhhhcCCCchheEEEEEC-CCCCCchHHHHHHHHHh
Confidence 46666776554 22221111 11 223 69999999999999999
No 401
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=25.01 E-value=68 Score=26.85 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=16.5
Q ss_pred EEEEeCCC--ChHHHHHHHHHHH
Q 013570 134 LVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+|.|+|.. ||||.+..|+.-|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46777764 7999999988877
No 402
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=24.99 E-value=44 Score=29.70 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.6
Q ss_pred EEEeCCCChHHHHHHHHHHH
Q 013570 135 VGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL 154 (440)
||+-| +||||++..|.+++
T Consensus 5 IAtiG-CGKTTva~aL~~LF 23 (168)
T PF08303_consen 5 IATIG-CGKTTVALALSNLF 23 (168)
T ss_pred ecCCC-cCHHHHHHHHHHHc
Confidence 34444 79999999999999
No 403
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=24.88 E-value=87 Score=28.04 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeE-EeecCCeEEEEecCCCCHHHHHHHHHHHhccc
Q 013570 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL-LVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (440)
Q Consensus 320 laAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~-~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~ 384 (440)
..|.+++..+|+|.--+.+.-+.+. .....+- +..+..+.++|| --.+-.++.++.+.+++..
T Consensus 71 ~lA~~lA~~l~~p~~~~rk~~k~yg-~~~~~~g~~~~g~~VlIVDD-vitTG~Tl~~~~~~l~~~G 134 (176)
T PRK13812 71 PLVAVTSVETGVPYVIARKQAKEYG-TGNRIEGRLDEGEEVVVLED-IATTGQSAVDAVEALREAG 134 (176)
T ss_pred HHHHHHHHHHCCCEEEEeccCCcCC-CCCeEEecCCCcCEEEEEEE-eeCCCHHHHHHHHHHHHCC
Confidence 3455666678876543333222221 0111111 123467888999 7889999999999998754
No 404
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=24.83 E-value=79 Score=29.10 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|-|.| ||||+-.+|..++
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999998 7999999987554
No 405
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=24.72 E-value=52 Score=31.18 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..+++|+|-| ||||...+|..+++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999997 89999999988773
No 406
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.65 E-value=2.1e+02 Score=29.54 Aligned_cols=112 Identities=20% Similarity=0.303 Sum_probs=65.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeEEecCcCC-CCcchhhHHhcccCCCcEEEEeeccCCcchHHhhcccc
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVFQSYGNWN-NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~~t~g~~n-~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~ 207 (440)
+.-+|.|.|-- ||||+---+.+-|.+.+ ++.+..|-.. .++-.-..-+.++.+.-+..-|..+ .++....+-.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~---e~I~~~l~~~ 167 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNL---EDIIAELEQE 167 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCH---HHHHHHHHhc
Confidence 35688888874 79998887888784555 8876555311 0111111111222344455566643 2334433447
Q ss_pred CCcEEEEcCCChhhhccC----CCHHHHHHHHHHhcccCCCCc
Q 013570 208 RPEIRVVLNVGDSHLESL----GSLEDVARAKGEIFQESKLGD 246 (440)
Q Consensus 208 ~p~vaviTNi~~dHl~~~----gs~e~~~~~K~~i~~~~~~~~ 246 (440)
+|++.||=+|.-=|.+.. ||...+.+.-..|++..+..+
T Consensus 168 ~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~ 210 (456)
T COG1066 168 KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKN 210 (456)
T ss_pred CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 999999999976665554 677777776666665444444
No 407
>PRK13947 shikimate kinase; Provisional
Probab=24.59 E-value=84 Score=27.31 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHhCCCCe
Q 013570 134 LVGVTG--SVGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 134 vI~VTG--TnGKTTT~~ml~~iL~~~g~~~ 161 (440)
-|.++| -.||||++.+|+..| |++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCE
Confidence 366666 469999999999988 5544
No 408
>PRK13946 shikimate kinase; Provisional
Probab=24.56 E-value=83 Score=28.06 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=18.7
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL 154 (440)
.+.|.++| -.||||+..+|+.-|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34677777 469999999999988
No 409
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.53 E-value=73 Score=28.59 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=18.6
Q ss_pred CCcEEEEeCCCC--hHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSVG--KSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTnG--KTTT~~ml~~iL 154 (440)
+..+++|+|.|| |||...+|..++
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999986 998888777543
No 410
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=24.51 E-value=1.5e+02 Score=29.07 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=43.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhCCCCeEEec---CcCCCCcchhhHHhcc--cCCCcEEEEeeccCCcchHHhhccccC
Q 013570 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSY---GNWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILELARMAR 208 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~---g~~n~~~g~p~~l~~~--~~~~~~~VlE~g~~~~g~~~~~~~~~~ 208 (440)
+-||||-.| +.|+++|-..|+.|++.. ..+|..- + .|... ..+.++-+.+.++.....+.++...++
T Consensus 7 ITGITGQDG-----sYLa~lLLekGY~VhGi~Rrss~~n~~r-i--~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~ 78 (345)
T COG1089 7 ITGITGQDG-----SYLAELLLEKGYEVHGIKRRSSSFNTPR-I--HLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQ 78 (345)
T ss_pred EecccCCch-----HHHHHHHHhcCcEEEEEeeccccCCccc-c--eeccccccCCceeEEEeccccchHHHHHHHHhcC
Confidence 567888877 678888879999997643 2233221 1 22222 345557777777766666666666677
Q ss_pred Cc
Q 013570 209 PE 210 (440)
Q Consensus 209 p~ 210 (440)
||
T Consensus 79 Pd 80 (345)
T COG1089 79 PD 80 (345)
T ss_pred ch
Confidence 87
No 411
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=24.50 E-value=74 Score=27.52 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=19.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
+|.|+|. .||||++..++..| |+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~~ 28 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLKL 28 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCce
Confidence 6888887 47999999998876 5544
No 412
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=24.44 E-value=90 Score=28.47 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|.|.| ||||....|...|
T Consensus 22 ~g~~~i~G~NGsGKTTLl~ai~~~l 46 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999998 7999999888777
No 413
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=24.40 E-value=82 Score=33.74 Aligned_cols=33 Identities=39% Similarity=0.375 Sum_probs=27.9
Q ss_pred CCCcEEEEeCCC------ChHHHHHHHHHHHH-hCCCCeE
Q 013570 130 FSGVLVGVTGSV------GKSTTKSMIALALE-SLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTGTn------GKTTT~~ml~~iL~-~~g~~~~ 162 (440)
.+.+.|-||+.+ |||||+-=|.+.|. ..|.++.
T Consensus 66 ~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~ 105 (625)
T PTZ00386 66 PNGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTF 105 (625)
T ss_pred CCCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceE
Confidence 356889999876 99999999999997 5788864
No 414
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=24.40 E-value=54 Score=30.03 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|+|-| ||||...+|..++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999997 8999999888777
No 415
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=24.34 E-value=81 Score=28.46 Aligned_cols=24 Identities=42% Similarity=0.493 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|-| ||||...+|..++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 36789999996 8999999888766
No 416
>PRK04296 thymidine kinase; Provisional
Probab=24.33 E-value=1.3e+02 Score=26.95 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=18.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.++-|||. .||||....+..-+...|.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~ 34 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVL 34 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 46788998 5666555444444445677764
No 417
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=24.33 E-value=1.1e+02 Score=27.17 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=22.7
Q ss_pred EEEeCC--CChHHHHHHHHHHHHhCCCCeEE
Q 013570 135 VGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
|.|||- .||||...-+.+.|+..+.++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G 32 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGG 32 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccce
Confidence 678886 58999999888999888877743
No 418
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=24.27 E-value=2.6e+02 Score=27.37 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCC----CCHHHHHHHHHHHhcccCCCcEEEEE
Q 013570 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYN----ANPISTRAAIDLLKDIACNGKRVVIL 393 (440)
Q Consensus 320 laAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsya----hnp~s~~~al~~l~~~~~~~r~i~Vl 393 (440)
..|-.+|..+|++.-.+ .+..|..=+-..++... ++.+.++..+.. .+--.+--+++++++.. .+|+++|+
T Consensus 11 ~la~~ia~~lg~~~~~~--~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~g-a~~i~~v~ 87 (308)
T TIGR01251 11 ELAQKVAKNLGLPLGDV--EVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRAS-AKSITAVI 87 (308)
T ss_pred HHHHHHHHHhCCeeeee--EEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcC-CCeEEEEE
Confidence 34556677788766554 44666532333333222 234444414332 22234445566777665 56788888
Q ss_pred cCCCCC-Chh-----cHHHHHHHHHHHHHcCCCEEEEEcCchhh
Q 013570 394 GDMLEL-GST-----ERESHEKILSYCCDACIDLIGLVGDRVVV 431 (440)
Q Consensus 394 G~m~e~-G~~-----~~~~~~~l~~~~~~~~~d~vi~~G~~~~~ 431 (440)
--|.-. -++ +.---+-+++.+...++|++++++.+...
T Consensus 88 PYl~Y~RqDr~~~~ge~is~~~~a~ll~~~g~d~vit~DlHs~~ 131 (308)
T TIGR01251 88 PYYGYARQDKKFKSREPISAKLVANLLETAGADRVLTVDLHSPQ 131 (308)
T ss_pred EecccchhccccCCCCCchHHHHHHHHHHcCCCEEEEecCChHH
Confidence 653200 000 11123568888988889999999988753
No 419
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=24.18 E-value=85 Score=28.04 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=20.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
.-+.++|+ .|||..+..+..-+-..|++|..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f 80 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLF 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeE
Confidence 34555555 48999998888766578888743
No 420
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.15 E-value=3.9e+02 Score=26.43 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCC---CCHHHHHHHHHHHhcccCCCcEEEEEcC
Q 013570 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYN---ANPISTRAAIDLLKDIACNGKRVVILGD 395 (440)
Q Consensus 321 aAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsya---hnp~s~~~al~~l~~~~~~~r~i~VlG~ 395 (440)
+|-.+|..+|++.-.+ .+..|.-=+-..++... ++.+.+|-..+. .+.-.+--+++++++.. .+|+++|+--
T Consensus 18 La~~ia~~lg~~l~~~--~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~-a~~i~~ViPY 94 (319)
T PRK04923 18 LAQSICKELGVRMGKA--LVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRAS-AASVTAVIPY 94 (319)
T ss_pred HHHHHHHHhCCceeee--EEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC-CcEEEEEeec
Confidence 4556667788876654 44666532222232221 345555544221 22233444456666655 5677788754
Q ss_pred CCC-CChhc------HHHHHHHHHHHHHcCCCEEEEEcCchhhhhh
Q 013570 396 MLE-LGSTE------RESHEKILSYCCDACIDLIGLVGDRVVVQCK 434 (440)
Q Consensus 396 m~e-~G~~~------~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~~ 434 (440)
|.- .-++. .---+.+++.+...++|+|+++..+......
T Consensus 95 l~YaRQDr~~~~~~~~isak~va~ll~~~g~d~vitvD~H~~~~~~ 140 (319)
T PRK04923 95 FGYSRQDRRMRSSRVPITAKVAAKMISAMGADRVLTVDLHADQIQG 140 (319)
T ss_pred cccccccccccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHh
Confidence 310 00110 0113558888888889999999988764443
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.09 E-value=1.1e+02 Score=31.66 Aligned_cols=31 Identities=32% Similarity=0.338 Sum_probs=22.7
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH--hCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALE--SLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~--~~g~~~~ 162 (440)
.++|++.|. .|||||+..|+..+. ..+.+|.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~ 255 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVA 255 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE
Confidence 357777775 479999999988875 3466664
No 422
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.03 E-value=3.4e+02 Score=26.99 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecC---CCCHHHHHHHHHHHhcccCCCcEEEE
Q 013570 318 NACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAY---NANPISTRAAIDLLKDIACNGKRVVI 392 (440)
Q Consensus 318 NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsy---ahnp~s~~~al~~l~~~~~~~r~i~V 392 (440)
|-.+|-.+|..+|+++-.+ .+..|.-=+-..++... ++.+.++-+.. |.+--.+--+++++++.. .+++++|
T Consensus 18 ~~~La~~ia~~lg~~l~~~--~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~-a~~i~~V 94 (332)
T PRK00553 18 AKKLVDSICRKLSMKPGEI--VIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGS-AKSITAI 94 (332)
T ss_pred CHHHHHHHHHHhCCceeee--EEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcC-CCeEEEE
Q ss_pred EcCCCCCChhcHHHH---------HHHHHHHHHcCCCEEEEEcCchhhhhhh
Q 013570 393 LGDMLELGSTERESH---------EKILSYCCDACIDLIGLVGDRVVVQCKW 435 (440)
Q Consensus 393 lG~m~e~G~~~~~~~---------~~l~~~~~~~~~d~vi~~G~~~~~~~~~ 435 (440)
+-- +|-.-.+.. +.+++.+...++|+|+++..+......+
T Consensus 95 iPY---l~YaRQDr~~~~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~~~ 143 (332)
T PRK00553 95 LPY---YGYARQDRKTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGF 143 (332)
T ss_pred eec---cccchhhcccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhh
No 423
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=23.92 E-value=83 Score=28.95 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|-| ||||...+|..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999987 6999999998887
No 424
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.92 E-value=3.1e+02 Score=26.96 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCC-CHH--HHHHHHHHHhcccCCCcEEEEEcC
Q 013570 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNA-NPI--STRAAIDLLKDIACNGKRVVILGD 395 (440)
Q Consensus 321 aAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsyah-np~--s~~~al~~l~~~~~~~r~i~VlG~ 395 (440)
+|-.+|..+|++...+ -+..|..=+-..++... ++.+.++-..+.. |-. .+--+++++++.. .+++++|+--
T Consensus 12 la~~ia~~lg~~~~~~--~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~g-a~~i~lViPY 88 (309)
T PRK01259 12 LAEKIAKYLGIPLGKA--SVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRAS-AGRITAVIPY 88 (309)
T ss_pred HHHHHHHHhCCceeee--EEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcC-CceEEEEeec
Confidence 4556667788776543 44566532322333221 2444455442222 222 2334455666655 5677788765
Q ss_pred CCCCChhcH--------HHHHHHHHHHHHcCCCEEEEEcCchhhhhh
Q 013570 396 MLELGSTER--------ESHEKILSYCCDACIDLIGLVGDRVVVQCK 434 (440)
Q Consensus 396 m~e~G~~~~--------~~~~~l~~~~~~~~~d~vi~~G~~~~~~~~ 434 (440)
|.- .|.+ ---+-+++.+...++|+|+++..+......
T Consensus 89 l~Y--sRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~~ 133 (309)
T PRK01259 89 FGY--ARQDRKARSRVPITAKLVANLLETAGADRVLTMDLHADQIQG 133 (309)
T ss_pred ccc--chhhhhhccCCCchHHHHHHHHhhcCCCEEEEEcCChHHHcC
Confidence 320 1111 112558888888889999999988764433
No 425
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=23.69 E-value=70 Score=30.30 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|-| ||||...+|..++
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35789999997 8999999998887
No 426
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=23.68 E-value=5.9e+02 Score=25.91 Aligned_cols=72 Identities=15% Similarity=0.069 Sum_probs=49.1
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 357 ~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.++.||-| --.+...+...++.+.. ++..+.++.+|+..+.|..+.+-..-+...-..+.-..+++-|++..
T Consensus 66 ~~i~VvGD-IHG~~~dL~~ll~~~g~-~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~ 137 (377)
T cd07418 66 CEVVVVGD-VHGQLHDVLFLLEDAGF-PDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHES 137 (377)
T ss_pred CCEEEEEe-cCCCHHHHHHHHHHhCC-CCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeeccc
Confidence 57889999 55578888888876543 22356789999999999888766555444333343345577787653
No 427
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=23.61 E-value=6.2e+02 Score=24.76 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=50.5
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 357 ~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.++.++-| --.|...+.+.++.... + ....++.+|+..+.|..+.+-...+...-..+.-..+++-|++..
T Consensus 43 ~~i~ViGD-IHG~~~dL~~l~~~~g~-~-~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~ 113 (305)
T cd07416 43 APVTVCGD-IHGQFYDLLKLFEVGGS-P-ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHEC 113 (305)
T ss_pred CCEEEEEe-CCCCHHHHHHHHHhcCC-C-CCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcH
Confidence 57788889 32388999888876543 2 356889999999999988776666655444443356678898654
No 428
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.60 E-value=53 Score=31.51 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|.| ||||+..+|.-++.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999998 79999999988774
No 429
>PLN02318 phosphoribulokinase/uridine kinase
Probab=23.57 E-value=83 Score=34.05 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
...+|||+|-+ ||||++..|...+
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 45799999975 7999999999887
No 430
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.54 E-value=1.3e+02 Score=31.18 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=22.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH-HhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL-ESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL-~~~g~~~~ 162 (440)
..+|+++|. .|||||+.-|+..+ ...|.++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~ 256 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVS 256 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 457888875 58999999998644 46677764
No 431
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=23.54 E-value=61 Score=29.42 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..+++|+|-| ||||...+|..++.
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999987 69999888887763
No 432
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=23.53 E-value=1.7e+02 Score=28.33 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHHHHhhcCC-CCCcEEEEeCC--CChHHHHHHHHHHHHhC
Q 013570 119 VNMACYARNSR-FSGVLVGVTGS--VGKSTTKSMIALALESL 157 (440)
Q Consensus 119 ~~la~~~~~p~-~~~~vI~VTGT--nGKTTT~~ml~~iL~~~ 157 (440)
..|+....+++ ....+||++|- .||||...++..-|+..
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34566554533 55679999997 78999999999999766
No 433
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=23.51 E-value=85 Score=30.25 Aligned_cols=28 Identities=39% Similarity=0.652 Sum_probs=21.7
Q ss_pred EEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 135 VGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 135 I~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|+|= |--|||||+.=|+..|...|++|.
T Consensus 3 IAiYGKGGIGKST~~~Nlsaala~~G~kVl 32 (273)
T PF00142_consen 3 IAIYGKGGIGKSTTASNLSAALAEMGKKVL 32 (273)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred EEEEcCCCcccChhhhHHHHHHHhccceee
Confidence 4443 678999999999999999999984
No 434
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=23.45 E-value=2.8e+02 Score=24.21 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCCh--hcH---HHHHHHHHHHHHcCCCE
Q 013570 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGS--TER---ESHEKILSYCCDACIDL 421 (440)
Q Consensus 368 hnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~--~~~---~~~~~l~~~~~~~~~d~ 421 (440)
.-|+.+...++.+......++++++||. .+. .++ ...+.+.+.+.+.++..
T Consensus 59 ~~p~~~~~fl~~l~~~~l~gk~v~~fg~---g~~~~y~~~f~~a~~~l~~~l~~~G~~~ 114 (167)
T TIGR01752 59 ELQEDWEDFLPTLEELDFTGKTVALFGL---GDQEGYSETFCDGMGILYDKIKARGAKV 114 (167)
T ss_pred cCcHHHHHHHHHhhcCCCCCCEEEEEec---CCCCcccHHHHHHHHHHHHHHHHcCCeE
Confidence 4677888888887654435789999995 221 222 22566777777765553
No 435
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=23.41 E-value=87 Score=29.02 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.9
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+|+|+|.+ ||||++.+|+.-|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999875 7999999999877
No 436
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.39 E-value=62 Score=30.07 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.3
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..+++|+|-| ||||...+|..++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5689999997 69999999988773
No 437
>PRK10908 cell division protein FtsE; Provisional
Probab=23.39 E-value=84 Score=28.81 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|-| ||||...+|..++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999997 8999999988776
No 438
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.32 E-value=61 Score=29.73 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|+|-| ||||...+|.-++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999997 7999999998776
No 439
>PRK11890 phosphate acetyltransferase; Provisional
Probab=23.31 E-value=2e+02 Score=28.33 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=6.1
Q ss_pred CCCHHHHHHHHHHH
Q 013570 367 NANPISTRAAIDLL 380 (440)
Q Consensus 367 ahnp~s~~~al~~l 380 (440)
++++..++++.++.
T Consensus 30 a~D~~vl~Aa~~a~ 43 (312)
T PRK11890 30 PCDESSLRGAVEAA 43 (312)
T ss_pred CCCHHHHHHHHHHH
Confidence 34444444444444
No 440
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.17 E-value=53 Score=30.14 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=19.2
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|+|-| ||||...+|..++
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999987 5999988888776
No 441
>PRK04182 cytidylate kinase; Provisional
Probab=23.14 E-value=79 Score=27.54 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=17.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 013570 134 LVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (440)
+|.|+|. .||||++..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 5778876 58999999998877
No 442
>PRK09183 transposase/IS protein; Provisional
Probab=23.03 E-value=1.2e+02 Score=28.93 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=22.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
..+.++|. .|||+.+..|...+...|+++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~ 135 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF 135 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 34556664 38999999998877678887743
No 443
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=22.96 E-value=85 Score=29.20 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|.| ||||...+|.-++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35789999997 7999988888776
No 444
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=22.93 E-value=1.1e+02 Score=30.88 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhcC-CCCCcEEEEeCCCChHHHHHHHHHHHHhC
Q 013570 114 TLNSLVNMACYARNS-RFSGVLVGVTGSVGKSTTKSMIALALESL 157 (440)
Q Consensus 114 ~~~al~~la~~~~~p-~~~~~vI~VTGTnGKTTT~~ml~~iL~~~ 157 (440)
..+....|..+++.. ..+.-+.|-||| |||.|+.++..-|+..
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GT-GKT~~~~~v~~~l~~~ 69 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGT-GKTATVKFVMEELEES 69 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCC-CHhHHHHHHHHHHHhh
Confidence 333334444444441 112444555665 8999999999999765
No 445
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.88 E-value=2.8e+02 Score=25.30 Aligned_cols=82 Identities=17% Similarity=0.113 Sum_probs=44.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhcccc---
Q 013570 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA--- 207 (440)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~--- 207 (440)
+.+.|.|||.+| ..=.++..+++ +.|.++..+.-+. .........+..+.++.+++++.....++.++...+
T Consensus 4 ~~~~vlItGasg-~iG~~l~~~l~-~~G~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 4 EGKVAIVTGASS-GIGEGIARRFA-AEGARVVVTDRNE---EAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred CCcEEEEECCCC-hHHHHHHHHHH-HCCCEEEEEeCCH---HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999988 44456666666 7788875432221 111111111222445667777777665555443222
Q ss_pred --CCcEEEEcCCC
Q 013570 208 --RPEIRVVLNVG 218 (440)
Q Consensus 208 --~p~vaviTNi~ 218 (440)
++|+.|. |.+
T Consensus 79 ~~~~d~vi~-~ag 90 (251)
T PRK07231 79 FGSVDILVN-NAG 90 (251)
T ss_pred hCCCCEEEE-CCC
Confidence 5676555 444
No 446
>PRK09213 pur operon repressor; Provisional
Probab=22.82 E-value=68 Score=30.98 Aligned_cols=71 Identities=27% Similarity=0.246 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcC---------C-CCCCCceeEE-------eecCCeEEEEecCCCCHHHHHHHHHHHh
Q 013570 319 ACAAAAVATLFGVSLAQVGISLSN---------F-SPVQMRSELL-------VSRSGIKIVNDAYNANPISTRAAIDLLK 381 (440)
Q Consensus 319 alaAia~~~~lg~~~~~i~~~L~~---------~-~~~~gR~e~~-------~~~~~~~ii~Dsyahnp~s~~~al~~l~ 381 (440)
...|.++|..||++.--+.+.-+- | .+..+|.|.+ ..+..++|||| .-.+-.++.++++.++
T Consensus 142 IplA~~vA~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDD-v~~TGgTi~a~i~Ll~ 220 (271)
T PRK09213 142 IPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDD-FMKAGGTINGMISLLK 220 (271)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEee-ecccCHhHHHHHHHHH
Confidence 456777888888875433331111 0 1223444432 23567888999 8999999999999998
Q ss_pred cccCCCcEEEE
Q 013570 382 DIACNGKRVVI 392 (440)
Q Consensus 382 ~~~~~~r~i~V 392 (440)
+.. ...+.+
T Consensus 221 e~G--a~VvGv 229 (271)
T PRK09213 221 EFD--AEVVGI 229 (271)
T ss_pred HCC--CEEEEE
Confidence 853 444433
No 447
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=22.82 E-value=3.4e+02 Score=25.91 Aligned_cols=65 Identities=28% Similarity=0.276 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhhhhhh
Q 013570 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQCKWR 436 (440)
Q Consensus 366 yahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~~~~ 436 (440)
+...|+-++++-+.+++..+ + +-|.|. ..|-.+....+.+.+.+++++.| ++++|-..+.+..|-
T Consensus 114 lGgkp~V~~~a~~~l~~~~p-~--l~ivg~--h~GYf~~~e~~~i~~~I~~s~pd-il~VgmG~P~QE~wi 178 (253)
T COG1922 114 LGGKPGVAEQAAAKLRAKYP-G--LKIVGS--HDGYFDPEEEEAIVERIAASGPD-ILLVGMGVPRQEIWI 178 (253)
T ss_pred ecCCHHHHHHHHHHHHHHCC-C--ceEEEe--cCCCCChhhHHHHHHHHHhcCCC-EEEEeCCCchhHHHH
Confidence 46679999999888887662 2 223332 12434333336788888888766 456688888887774
No 448
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=22.81 E-value=63 Score=29.19 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|+|-| ||||...+|.-++
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5689999997 7999988888776
No 449
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=22.75 E-value=59 Score=29.59 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|-| ||||...+|..++
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999987 7999988888776
No 450
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=22.74 E-value=92 Score=28.17 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.5
Q ss_pred cEEEEeCCC--ChHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIA 151 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~ 151 (440)
+++++||-| ||||...+|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 589999988 6999988877
No 451
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=22.74 E-value=89 Score=26.67 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|.| ||||...+|..++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 35689999986 7999988887776
No 452
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=22.69 E-value=65 Score=30.41 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|.| ||||...+|..++.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35789999987 79999999888773
No 453
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=22.69 E-value=58 Score=29.46 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|.| ||||...+|..++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999986 6999988887766
No 454
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=22.66 E-value=65 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|-| ||||...+|..++.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35799999997 79999999888773
No 455
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=22.56 E-value=1.1e+02 Score=26.48 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhcC--CCCCcEEEEeCCCChHHHHHH-HHHHH
Q 013570 116 NSLVNMACYARNS--RFSGVLVGVTGSVGKSTTKSM-IALAL 154 (440)
Q Consensus 116 ~al~~la~~~~~p--~~~~~vI~VTGTnGKTTT~~m-l~~iL 154 (440)
+++..+...+... ....-+.+.||| |||-+... +..+.
T Consensus 10 ~ai~~i~~~~~~~~~~~~~ll~~~tGs-GKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 10 EAIARIINSLENKKEERRVLLNAPTGS-GKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHHHHHTTSGCSEEEEEESTTS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCC-CcChhhhhhhhccc
Confidence 4555666544331 233456778886 99999884 55555
No 456
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=22.51 E-value=61 Score=33.68 Aligned_cols=30 Identities=40% Similarity=0.726 Sum_probs=26.4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.-+-|=||| |||-|-..|+.-|.+.|..|.
T Consensus 22 GLIaGATGT-GKTvTLqvlAE~fS~~GVPVf 51 (502)
T PF05872_consen 22 GLIAGATGT-GKTVTLQVLAEQFSDAGVPVF 51 (502)
T ss_pred ceeeccCCC-CceehHHHHHHHhhhcCCcEE
Confidence 457788887 999999999999999999884
No 457
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=22.51 E-value=98 Score=27.79 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=18.9
Q ss_pred CcHHHHHHHHHHHHHHHHcCCC
Q 013570 311 PGLHLAINACAAAAVATLFGVS 332 (440)
Q Consensus 311 ~G~~nv~NalaAia~~~~lg~~ 332 (440)
+.+||-.|-++|++.+.++|.+
T Consensus 143 i~eHqe~nR~aA~a~A~~~gat 164 (189)
T COG2019 143 IREHQEMNRAAAMAYAILLGAT 164 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhCCe
Confidence 5589999999999999988753
No 458
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.50 E-value=72 Score=29.53 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|.| ||||...+|..++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35789999997 79999999988773
No 459
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=22.43 E-value=63 Score=31.37 Aligned_cols=30 Identities=40% Similarity=0.451 Sum_probs=24.3
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCe
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~ 161 (440)
..++|.-|-| |||||-.||.-++.-.+.++
T Consensus 50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred CcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 4589999988 59999999999996555544
No 460
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=22.29 E-value=4.1e+02 Score=24.21 Aligned_cols=60 Identities=28% Similarity=0.298 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHhccc--CCCcEEEEEcCCCCCChhc--HHHHHHHHHHHHHcCCCEEEEEcCc
Q 013570 369 NPISTRAAIDLLKDIA--CNGKRVVILGDMLELGSTE--RESHEKILSYCCDACIDLIGLVGDR 428 (440)
Q Consensus 369 np~s~~~al~~l~~~~--~~~r~i~VlG~m~e~G~~~--~~~~~~l~~~~~~~~~d~vi~~G~~ 428 (440)
+|+.+++.++.+.+.. ..-..+++.|++.+.|... .....++.+.+.+.++...++.|++
T Consensus 16 ~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNH 79 (214)
T cd07399 16 YPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNH 79 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 5777776766554322 1235778889988877522 2222333444433346677777875
No 461
>PRK00023 cmk cytidylate kinase; Provisional
Probab=22.27 E-value=94 Score=28.94 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=19.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.+|+|+|. .||||++.+|+.-|
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 68999987 58999999999888
No 462
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=22.24 E-value=1.1e+02 Score=26.99 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=18.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.++|.++|. .||||.+..|...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 357777774 68999999998887
No 463
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.17 E-value=1.3e+02 Score=29.90 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=53.5
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhCCCCeE--EecC--cCCCCcch--hhHHhcccCCCcEEEEeeccCCcc-----h
Q 013570 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF--QSYG--NWNNRVGV--ALSLIGIDRAVDIAVLEMGMSGKG-----E 199 (440)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~--~t~g--~~n~~~g~--p~~l~~~~~~~~~~VlE~g~~~~g-----~ 199 (440)
++|-+| |=.||||++.-++..|.+.|.++. .+-. +...-++. +....++. ...-++|.+..... +
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~--~nL~a~eiD~~~~l~ey~~~ 80 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG--PNLDALELDPEKALEEYWDE 80 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcC--CCCceeeecHHHHHHHHHHH
Confidence 456666 678999999999999978887663 2211 11111111 11111222 34556666543220 1
Q ss_pred HHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhccc
Q 013570 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQE 241 (440)
Q Consensus 200 ~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~ 241 (440)
..+.... .+....+-++..|++...+.+++++ +..+|.+.
T Consensus 81 v~~~~~~-~~~~~~l~~~~~~e~~~~PGidE~~-~l~~i~e~ 120 (322)
T COG0003 81 VKDYLAR-LLRTRGLGGIYADELATLPGIDEAL-ALLKILEY 120 (322)
T ss_pred HHHHHHh-hccccccchhHHHHHhhCCCHHHHH-HHHHHHHH
Confidence 1111111 2333333677778888888888775 33334433
No 464
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=22.17 E-value=2.7e+02 Score=25.97 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCc
Q 013570 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428 (440)
Q Consensus 388 r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~ 428 (440)
..+++.|++....... .-.+++.+++.+.+.+.+++-|++
T Consensus 60 d~vIi~GDl~h~~~~~-~~~~~~~~~l~~~~~~v~~V~GNH 99 (225)
T TIGR00024 60 EALIINGDLKHEFKKG-LEWRFIREFIEVTFRDLILIRGNH 99 (225)
T ss_pred CEEEEcCccccccCCh-HHHHHHHHHHHhcCCcEEEECCCC
Confidence 5677777766433332 334455556655555666666654
No 465
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=2e+02 Score=25.37 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCCCChhcH--------HHHHHHHHHHHHcCCCEEEEEcC-chhhhhhhhh
Q 013570 386 NGKRVVILGDMLELGSTER--------ESHEKILSYCCDACIDLIGLVGD-RVVVQCKWRK 437 (440)
Q Consensus 386 ~~r~i~VlG~m~e~G~~~~--------~~~~~l~~~~~~~~~d~vi~~G~-~~~~~~~~~~ 437 (440)
.++++++||- .|..+. .+.....+.-+ .++|.||++.- ++-....|.|
T Consensus 42 ~GKKvIifGv---PgAFtPtCs~~HvPGyi~~a~elks-KGVd~iicvSVnDpFv~~aW~k 98 (171)
T KOG0541|consen 42 KGKKVILFGV---PGAFTPTCSSSHVPGYIEKADELKS-KGVDEIICVSVNDPFVMKAWAK 98 (171)
T ss_pred CCceEEEEcC---CCccCCccccccCchHHHHHHHHHh-cCCcEEEEEecCcHHHHHHHHh
Confidence 5799999998 776643 34444444444 57999999874 4446666664
No 466
>PRK07308 flavodoxin; Validated
Probab=22.12 E-value=2.5e+02 Score=23.80 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcH----HHHHHHHHHHHHcCCC
Q 013570 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER----ESHEKILSYCCDACID 420 (440)
Q Consensus 368 hnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~----~~~~~l~~~~~~~~~d 420 (440)
.-|+.+...++.++.....+++++|||. |++.- ..-+.+-+.+.+.++.
T Consensus 63 ~~p~~~~~fl~~l~~~~l~~k~~~vfG~----Gd~~y~~~~~a~~~~~~~l~~~g~~ 115 (146)
T PRK07308 63 ELPDEIVDFYEDLADLDLSGKIYGVVGS----GDTFYDYFCKSVDDFEAQFALTGAT 115 (146)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEEee----CCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 4577899999998776545789999994 55432 2223344455555443
No 467
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=22.01 E-value=66 Score=29.78 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|.| ||||...+|..++.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35689999997 79999999988873
No 468
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=21.98 E-value=92 Score=29.63 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|.|-| ||||...+|..++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 35789999986 89999999998873
No 469
>PRK05854 short chain dehydrogenase; Provisional
Probab=21.90 E-value=2.7e+02 Score=27.07 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=44.4
Q ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhcccc-
Q 013570 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA- 207 (440)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~- 207 (440)
..+.+++-|||.+| -+-.-++..|.+.|.++....-+..........+.....+.++.+++++.+...++.++.+.+
T Consensus 11 ~l~gk~~lITGas~--GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 11 DLSGKRAVVTGASD--GLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred ccCCCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 44567899999875 344444444547888875432221000001111212222345667788777766555443321
Q ss_pred ----CCcEEEEcCCCh
Q 013570 208 ----RPEIRVVLNVGD 219 (440)
Q Consensus 208 ----~p~vaviTNi~~ 219 (440)
+.|+ +|-|.+.
T Consensus 89 ~~~~~iD~-li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHL-LINNAGV 103 (313)
T ss_pred HhCCCccE-EEECCcc
Confidence 3455 4445553
No 470
>PRK06197 short chain dehydrogenase; Provisional
Probab=21.88 E-value=2.6e+02 Score=26.89 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=35.8
Q ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchh--hHHhcccCCCcEEEEeeccCCcchHHhh
Q 013570 128 SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA--LSLIGIDRAVDIAVLEMGMSGKGEILEL 203 (440)
Q Consensus 128 p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p--~~l~~~~~~~~~~VlE~g~~~~g~~~~~ 203 (440)
|+...++|-|||.+| -+-.-++..|.+.|.++....-+ ..-... ..+.....+.++.+++++.....++.++
T Consensus 12 ~~~~~k~vlItGas~--gIG~~~a~~l~~~G~~vi~~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 12 PDQSGRVAVVTGANT--GLGYETAAALAAKGAHVVLAVRN--LDKGKAAAARITAATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred ccCCCCEEEEcCCCC--cHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHH
Confidence 345568899999887 33333444444778876432211 110000 1111111234566677776666555443
No 471
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=21.87 E-value=3.4e+02 Score=28.90 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=54.3
Q ss_pred cCHHHHHHHhCCeecccCC-----CceE--Eee-----CCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEecc
Q 013570 27 WTINEIAESVNGKILKWGP-----PGII--CTD-----TRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ 94 (440)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~~-----i~~i--~~d-----sr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~ 94 (440)
.++.+|++.++|+++.... ...+ ..+ .+.+.+ |++.+- |.+.|- +..|++ +|+.++|+..
T Consensus 138 ~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~--~~lvi~--gdr~d~---~~~ai~-~~~~~lIlt~ 209 (546)
T PRK14869 138 TSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE--GDIVIV--GDREDI---QLAAIE-AGVRLLIITG 209 (546)
T ss_pred CCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccC--CCEEEE--cCcHHH---HHHHHH-cCCCEEEECC
Confidence 4788899999998764321 2222 112 234667 887655 777554 446899 9999988765
Q ss_pred ccCC----------CCceEEEEcCCCCccHHHHHHHHHH
Q 013570 95 VCNN----------WDKGFVQVEGNGNVNTLNSLVNMAC 123 (440)
Q Consensus 95 ~~~~----------~~~~~i~V~~~~~~d~~~al~~la~ 123 (440)
..+. .++|+|.++ -|+.++...+..
T Consensus 210 g~~~~~~v~~la~~~~i~ii~t~----~dt~~t~~~l~~ 244 (546)
T PRK14869 210 GAPVSEDVLELAKENGVTVISTP----YDTFTTARLINQ 244 (546)
T ss_pred CCCCCHHHHHHHHhCCCeEEEec----ccHHHHHHHhhc
Confidence 4331 278999888 267777666553
No 472
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=21.84 E-value=1.5e+02 Score=27.41 Aligned_cols=50 Identities=30% Similarity=0.403 Sum_probs=23.4
Q ss_pred HHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 376 al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
+++.+..+. .|.++.|||+ .|.-......++....... .-.++++|++..
T Consensus 5 ~ID~l~Pig-~Gqr~~I~g~---~g~GKt~Ll~~i~~~~~~d-~~V~~~iGer~~ 54 (215)
T PF00006_consen 5 AIDLLFPIG-RGQRIGIFGG---AGVGKTVLLQEIANNQDAD-VVVYALIGERGR 54 (215)
T ss_dssp HHHHHSCEE-TTSEEEEEES---TTSSHHHHHHHHHHHCTTT-EEEEEEESECHH
T ss_pred eeccccccc-cCCEEEEEcC---cccccchhhHHHHhccccc-ceeeeeccccch
Confidence 455555554 5666777766 4433333433333333211 113445565554
No 473
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=21.81 E-value=5.9e+02 Score=24.65 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=49.1
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 356 RSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 356 ~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
..++.++-| ---+-+.+...++.... + ....++.+|+..+.|..+.+....+...-..+.-..+++-|++..
T Consensus 41 ~~~i~vvGD-IHG~~~dL~~ll~~~~~-~-~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 112 (285)
T cd07415 41 RSPVTVCGD-IHGQFYDLLELFRVGGD-P-PDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHES 112 (285)
T ss_pred CCCEEEEEe-CCCCHHHHHHHHHHcCC-C-CCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccch
Confidence 367888889 43388888888876543 2 356788899999999887766555544333343356677887653
No 474
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=21.80 E-value=1.5e+02 Score=28.72 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 389 RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 389 ~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
+|.=-..|+-+|+.++++...|... ...+ ..|++.|..++
T Consensus 256 litktsiMlglgetdeei~~tl~dL-r~~~-vdv~t~gqym~ 295 (360)
T KOG2672|consen 256 LITKTSIMLGLGETDEEIKQTLKDL-RAAD-VDVVTFGQYMQ 295 (360)
T ss_pred ceehhhhhhccCCCHHHHHHHHHHH-HHcC-CcEEecccccC
Confidence 4433345555888877776666554 4443 44566676653
No 475
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=21.79 E-value=1.5e+02 Score=29.06 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.-+|.|+|+. ||||++..|+.-|
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899875 7999999999877
No 476
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.79 E-value=64 Score=31.02 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=21.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|.|-| ||||+..+|.-+++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36789999997 89999999988874
No 477
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.78 E-value=95 Score=28.14 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|-| ||||...+|..++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999987 7999999888776
No 478
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=21.78 E-value=75 Score=28.71 Aligned_cols=25 Identities=44% Similarity=0.569 Sum_probs=20.1
Q ss_pred CCcEEEEeCCCC--hHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSVG--KSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTnG--KTTT~~ml~~iL~ 155 (440)
+..+++|+|.|| |||...+|.-++.
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 356899999875 9998888887763
No 479
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=21.71 E-value=67 Score=28.95 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|+|.| ||||...+|+.++
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999997 8999999888776
No 480
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.61 E-value=99 Score=29.19 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.3
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|.|.| ||||...+|..++
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5689999987 7999999999887
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=21.61 E-value=82 Score=27.64 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=17.5
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
++|+|.|.+ ||||.+.+|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578888887 7999888887755
No 482
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=21.54 E-value=2.8e+02 Score=26.25 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=41.2
Q ss_pred cCHHHHHHHhCCeecc----cCCCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEecccc
Q 013570 27 WTINEIAESVNGKILK----WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC 96 (440)
Q Consensus 27 ~~~~~l~~~~~~~~~~----~~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~ 96 (440)
|+++||.+.+.-.... +.+-.|+...+..-.- ..+.+|+.-. .+-+++|++ +||..+|+..|.
T Consensus 1 M~~~~i~~~le~~~p~~~a~~wDn~Gl~vg~~~~~v--~~I~~alD~t----~~vi~~Ai~-~~~dlIitHHP~ 67 (249)
T TIGR00486 1 MNLDELIQLINRFLPKELAEDGDNNGLQVGSGNEEV--KKVVVAVDAS----ESVADEAVR-LGADLIITHHPL 67 (249)
T ss_pred CcHHHHHHHHHHhCCHHHhcCCCCCeeEecCCCccc--CEEEEEecCC----HHHHHHHHH-CCCCEEEEcCcc
Confidence 4778888877643221 1235566665322223 4688887543 467889999 999999998764
No 483
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=21.53 E-value=88 Score=34.67 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.6
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+|+|+|+. ||||++.+|+..|
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l 25 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYL 25 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999985 7999999999998
No 484
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=21.50 E-value=1.3e+02 Score=29.90 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=18.3
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL 154 (440)
.+-+.|.+|| ||||++..++..|
T Consensus 66 ~ilL~G~pGt-GKTtla~~lA~~l 88 (327)
T TIGR01650 66 RVMVQGYHGT-GKSTHIEQIAARL 88 (327)
T ss_pred cEEEEeCCCC-hHHHHHHHHHHHH
Confidence 3555666665 8999999999999
No 485
>PLN02327 CTP synthase
Probab=21.38 E-value=2.1e+02 Score=30.60 Aligned_cols=30 Identities=40% Similarity=0.500 Sum_probs=26.2
Q ss_pred cEEEEeC----CCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTG----TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.|-||| +-||..|++-|..+|++.|++|.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~ 35 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT 35 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCcee
Confidence 5677777 56999999999999999999984
No 486
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=21.30 E-value=1e+02 Score=34.31 Aligned_cols=29 Identities=38% Similarity=0.442 Sum_probs=23.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+.|..| .||||+...+..+++..|+++..
T Consensus 373 l~G~aG-TGKTtll~~i~~~~~~~g~~V~~ 401 (744)
T TIGR02768 373 VVGRAG-TGKSTMLKAAREAWEAAGYRVIG 401 (744)
T ss_pred EEecCC-CCHHHHHHHHHHHHHhCCCeEEE
Confidence 455556 48999999999999888988753
No 487
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.25 E-value=66 Score=29.13 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|.|.| ||||...+|..++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35689999987 69988888877763
No 488
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=21.24 E-value=1.3e+02 Score=29.91 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=17.7
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTG--TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..|.|+| ..||||+...|...+ ....++.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~i-p~~~ri~ 191 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREI-PAIERLI 191 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhC-CCCCeEE
Confidence 3466665 359999987766555 3444543
No 489
>PRK05380 pyrG CTP synthetase; Validated
Probab=21.22 E-value=1.1e+02 Score=32.41 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=26.9
Q ss_pred CcEEEEeC----CCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTG----TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+.|-||| +-||..|++-|..+|++.|++|.
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~ 36 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 36 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceE
Confidence 35677887 67999999999999999999973
No 490
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.14 E-value=69 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|-| ||||...+|+.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999997 89999999988874
No 491
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=21.11 E-value=6.2e+02 Score=24.64 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=48.6
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 357 ~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.++.++-| --.+..++.+.++.... + ....++.+|+..+.|..+.+-...+...-..+.-..+++-|++..
T Consensus 50 ~~i~viGD-IHG~~~~L~~l~~~~~~-~-~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~ 120 (293)
T cd07414 50 APLKICGD-IHGQYYDLLRLFEYGGF-P-PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 120 (293)
T ss_pred CceEEEEe-cCCCHHHHHHHHHhcCC-C-CcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccch
Confidence 57788889 43389999988887643 2 356788999999999888776555544333342345556687654
No 492
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=21.11 E-value=70 Score=29.20 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|+|-| ||||...+|..++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35789999997 59999888888773
No 493
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=21.04 E-value=5e+02 Score=24.15 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=35.6
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcC
Q 013570 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427 (440)
Q Consensus 357 ~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~ 427 (440)
+.+.++|| .-++-.+|.+++++++... .++ |.|.-.. -.++ ..+.+... .|.|+++-.
T Consensus 125 ~~VIlVDD-GiATGatm~aAi~~~r~~~-~~~-IviAVPV-----~p~~----a~~~l~s~-~D~vvc~~~ 182 (220)
T COG1926 125 RTVILVDD-GIATGATMKAAVRALRAKG-PKE-IVIAVPV-----APED----AAAELESE-ADEVVCLYM 182 (220)
T ss_pred CEEEEEeC-CcchhHHHHHHHHHHHhcC-Cce-EEEEccc-----CCHH----HHHHHHhh-cCeEEEEcC
Confidence 44666777 8999999999999999865 334 4333221 1222 33334444 577776653
No 494
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=21.03 E-value=6.1e+02 Score=24.88 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=49.5
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 357 ~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.++.++-| --.+-+++.+.++.+... ....++.+|+..+.|..+.+-...+...-..+.-..+++-|++..
T Consensus 43 ~~i~vvGD-IHG~~~~L~~l~~~~~~~--~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 113 (303)
T PTZ00239 43 APVNVCGD-IHGQFYDLQALFKEGGDI--PNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHES 113 (303)
T ss_pred CCEEEEEe-CCCCHHHHHHHHHhcCCC--CCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccch
Confidence 56888889 434899999888876543 356788999999999887766555544333333356677887653
No 495
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.93 E-value=74 Score=27.38 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..+++|+|.| ||||...+|..++.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999997 79999888887773
No 496
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.92 E-value=5.2e+02 Score=21.88 Aligned_cols=84 Identities=10% Similarity=0.094 Sum_probs=51.0
Q ss_pred CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHH
Q 013570 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410 (440)
Q Consensus 331 ~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l 410 (440)
.+++++.++..+..+ +.+ .+.--..++-..++.+++.+++.. -+...+++|+..-- ..+.+.+.
T Consensus 37 v~~e~~v~aa~~~~a-----diV-------glS~L~t~~~~~~~~~~~~l~~~g-l~~v~vivGG~~~i---~~~d~~~~ 100 (128)
T cd02072 37 SPQEEFIDAAIETDA-----DAI-------LVSSLYGHGEIDCKGLREKCDEAG-LKDILLYVGGNLVV---GKQDFEDV 100 (128)
T ss_pred CCHHHHHHHHHHcCC-----CEE-------EEeccccCCHHHHHHHHHHHHHCC-CCCCeEEEECCCCC---ChhhhHHH
Confidence 578888887765543 222 233324577899999999998754 22355666653211 12223333
Q ss_pred HHHHHHcCCCEEEEEcCchh
Q 013570 411 LSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 411 ~~~~~~~~~d~vi~~G~~~~ 430 (440)
-+.+.++++|.+|--|....
T Consensus 101 ~~~L~~~Gv~~vf~pgt~~~ 120 (128)
T cd02072 101 EKRFKEMGFDRVFAPGTPPE 120 (128)
T ss_pred HHHHHHcCCCEEECcCCCHH
Confidence 44456678999998887553
No 497
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=20.91 E-value=70 Score=29.64 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|+|-| ||||...+|..++
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5689999987 7999999998877
No 498
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=20.77 E-value=1.8e+02 Score=27.10 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=23.4
Q ss_pred CcEEEEeCCC--ChHHHH-HHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTK-SMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~-~ml~~iL~~~g~~~~ 162 (440)
..++.|+|.+ ||||.+ .++...+ ..|.++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~ 56 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL-QNGYSVS 56 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEE
Confidence 4589999986 899995 7888887 5677764
No 499
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.72 E-value=75 Score=29.40 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..+++|+|-| ||||...+|+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999987 79999998888773
No 500
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.68 E-value=4.8e+02 Score=25.84 Aligned_cols=110 Identities=19% Similarity=0.108 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCC-C--HHHHHHHHHHHhcccCCCcEEEEEcC
Q 013570 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNA-N--PISTRAAIDLLKDIACNGKRVVILGD 395 (440)
Q Consensus 321 aAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsyah-n--p~s~~~al~~l~~~~~~~r~i~VlG~ 395 (440)
+|-.+|..+|++...+ .+..|.-=+-..++... ++.+.+|-..+.. | --.+--+++++++.. .+++++|+--
T Consensus 21 la~~ia~~lg~~l~~~--~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~-a~~i~lViPY 97 (323)
T PRK02458 21 IAEKIAQAAGVPLGKL--SSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRAS-ANTVNVVLPY 97 (323)
T ss_pred HHHHHHHHhCCceeee--EEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC-CceEEEEEec
Confidence 4556677888876544 45566532222222221 2445455442211 2 233444456677665 5677888865
Q ss_pred CCCC-Chh-----cHHHHHHHHHHHHHcCCCEEEEEcCchhhhh
Q 013570 396 MLEL-GST-----ERESHEKILSYCCDACIDLIGLVGDRVVVQC 433 (440)
Q Consensus 396 m~e~-G~~-----~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~~ 433 (440)
|.=. -++ +.---+.+++.+...++|+|+++..+.....
T Consensus 98 l~YaRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~ 141 (323)
T PRK02458 98 FGYARQDRIAKPREPITAKLVANMLVKAGVDRVLTLDLHAVQVQ 141 (323)
T ss_pred cccchhhcccCCCCCchHHHHHHHHhhcCCCeEEEEecCcHHhh
Confidence 3200 000 0112356888888888999999998875443
Done!