Query 013570
Match_columns 440
No_of_seqs 309 out of 1830
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 13:03:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gg4_A UDP-N-acetylmuramoylala 100.0 7.1E-78 2.4E-82 620.9 46.4 389 27-431 4-396 (452)
2 2am1_A SP protein, UDP-N-acety 100.0 4.9E-77 1.7E-81 615.3 39.1 382 27-431 3-392 (454)
3 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 9.7E-72 3.3E-76 585.8 35.5 387 21-429 28-450 (535)
4 1e8c_A UDP-N-acetylmuramoylala 100.0 6.4E-71 2.2E-75 575.6 35.4 380 28-429 4-415 (498)
5 3hn7_A UDP-N-acetylmuramate-L- 100.0 1.1E-50 3.7E-55 424.8 31.9 319 85-428 79-452 (524)
6 1p3d_A UDP-N-acetylmuramate--a 100.0 2.6E-50 8.9E-55 417.9 34.0 365 15-426 19-402 (475)
7 2f00_A UDP-N-acetylmuramate--L 100.0 5.7E-50 1.9E-54 416.8 35.3 365 15-426 20-408 (491)
8 2x5o_A UDP-N-acetylmuramoylala 100.0 2.4E-51 8.2E-56 421.6 19.3 343 46-432 29-376 (439)
9 4hv4_A UDP-N-acetylmuramate--L 100.0 1.9E-48 6.6E-53 405.2 35.0 310 85-426 80-411 (494)
10 1jbw_A Folylpolyglutamate synt 100.0 8E-49 2.7E-53 401.7 22.6 287 113-427 24-367 (428)
11 2vos_A Folylpolyglutamate synt 100.0 4.1E-47 1.4E-51 394.1 32.2 295 113-427 45-406 (487)
12 1o5z_A Folylpolyglutamate synt 100.0 1.1E-47 3.8E-52 394.3 25.3 290 113-428 37-377 (442)
13 3lk7_A UDP-N-acetylmuramoylala 100.0 5.4E-47 1.8E-51 390.4 27.5 272 132-432 112-385 (451)
14 3nrs_A Dihydrofolate:folylpoly 100.0 1.8E-46 6.3E-51 384.7 27.1 294 115-429 35-380 (437)
15 1j6u_A UDP-N-acetylmuramate-al 100.0 8.8E-45 3E-49 375.5 35.1 267 132-427 114-387 (469)
16 1w78_A FOLC bifunctional prote 100.0 5.9E-46 2E-50 379.8 23.9 283 113-429 34-359 (422)
17 3eag_A UDP-N-acetylmuramate:L- 100.0 9.4E-40 3.2E-44 322.7 25.0 209 132-348 108-326 (326)
18 3mvn_A UDP-N-acetylmuramate:L- 99.5 2.1E-14 7.1E-19 127.0 8.6 90 333-428 11-102 (163)
19 3eh0_A UDP-3-O-[3-hydroxymyris 92.4 0.27 9.3E-06 47.7 7.6 86 27-127 4-92 (341)
20 4e79_A UDP-3-O-acylglucosamine 91.7 0.26 8.8E-06 48.2 6.5 86 26-126 7-97 (357)
21 3fwy_A Light-independent proto 89.7 0.31 1.1E-05 46.7 4.9 32 131-162 47-80 (314)
22 2g0t_A Conserved hypothetical 88.9 1.4 4.7E-05 42.8 8.9 108 131-238 168-310 (350)
23 1rz3_A Hypothetical protein rb 88.8 0.84 2.9E-05 40.3 6.9 48 115-162 4-54 (201)
24 3bfv_A CAPA1, CAPB2, membrane 88.6 1 3.4E-05 42.1 7.5 49 115-163 63-116 (271)
25 3pmo_A UDP-3-O-[3-hydroxymyris 88.6 1 3.4E-05 44.2 7.8 86 27-127 26-114 (372)
26 1xjc_A MOBB protein homolog; s 88.4 0.53 1.8E-05 40.8 5.0 32 131-162 3-36 (169)
27 3of5_A Dethiobiotin synthetase 88.2 0.49 1.7E-05 43.1 4.9 34 130-163 2-38 (228)
28 4dzz_A Plasmid partitioning pr 88.1 0.47 1.6E-05 41.6 4.6 31 132-162 1-34 (206)
29 3cio_A ETK, tyrosine-protein k 87.2 1.2 4E-05 42.2 7.1 50 114-163 84-138 (299)
30 1byi_A Dethiobiotin synthase; 87.2 0.47 1.6E-05 42.4 4.2 31 133-163 2-35 (224)
31 3la6_A Tyrosine-protein kinase 86.6 1.3 4.4E-05 41.7 7.0 48 115-162 73-125 (286)
32 3ea0_A ATPase, para family; al 84.1 0.86 2.9E-05 41.1 4.3 32 131-162 3-38 (245)
33 1wcv_1 SOJ, segregation protei 83.0 0.99 3.4E-05 41.4 4.3 33 131-163 5-40 (257)
34 1g3q_A MIND ATPase, cell divis 82.9 1.2 4.1E-05 39.9 4.8 31 133-163 3-36 (237)
35 3fgn_A Dethiobiotin synthetase 82.8 1.2 4.3E-05 41.0 4.9 33 130-162 24-59 (251)
36 3end_A Light-independent proto 81.5 1.4 4.9E-05 41.4 4.9 34 129-162 38-73 (307)
37 3c8u_A Fructokinase; YP_612366 81.0 3.6 0.00012 36.2 7.1 44 115-158 5-50 (208)
38 3qxc_A Dethiobiotin synthetase 80.4 1.7 5.8E-05 39.9 4.8 32 132-163 21-55 (242)
39 3q9l_A Septum site-determining 80.0 1.7 5.9E-05 39.5 4.8 31 133-163 3-36 (260)
40 1zu4_A FTSY; GTPase, signal re 79.9 1.8 6.1E-05 41.5 5.0 32 131-162 104-137 (320)
41 1pjq_A CYSG, siroheme synthase 79.6 2.8 9.5E-05 42.2 6.5 22 134-156 123-145 (457)
42 2xj4_A MIPZ; replication, cell 79.4 1.7 6E-05 40.5 4.7 31 133-163 5-38 (286)
43 2oze_A ORF delta'; para, walke 79.2 2.9 9.9E-05 39.0 6.2 47 113-162 18-69 (298)
44 1cp2_A CP2, nitrogenase iron p 78.7 1.9 6.7E-05 39.5 4.7 30 133-162 2-33 (269)
45 2ph1_A Nucleotide-binding prot 78.6 2.4 8.2E-05 38.9 5.3 33 131-163 17-52 (262)
46 2afh_E Nitrogenase iron protei 78.5 2.1 7.1E-05 39.9 4.9 31 132-162 2-34 (289)
47 1vma_A Cell division protein F 78.4 2.4 8.2E-05 40.3 5.3 32 131-162 103-136 (306)
48 3k9g_A PF-32 protein; ssgcid, 78.3 1.7 5.7E-05 40.0 4.1 33 129-162 24-59 (267)
49 2px0_A Flagellar biosynthesis 77.4 1.5 5.1E-05 41.5 3.5 32 131-162 104-138 (296)
50 3dm5_A SRP54, signal recogniti 76.5 4.6 0.00016 40.5 6.9 31 132-162 100-132 (443)
51 3cwq_A Para family chromosome 75.8 2.6 9E-05 37.3 4.6 28 134-162 2-32 (209)
52 1hyq_A MIND, cell division inh 75.6 2.8 9.6E-05 38.2 4.8 31 133-163 3-36 (263)
53 2z0h_A DTMP kinase, thymidylat 75.4 3.3 0.00011 35.7 5.0 31 134-164 2-34 (197)
54 3ez2_A Plasmid partition prote 75.2 2.9 0.0001 41.0 5.2 38 125-162 101-147 (398)
55 1odf_A YGR205W, hypothetical 3 74.7 4.7 0.00016 37.9 6.2 29 129-157 28-58 (290)
56 3fkq_A NTRC-like two-domain pr 74.7 2.6 8.8E-05 41.1 4.5 34 130-163 141-177 (373)
57 3zq6_A Putative arsenical pump 74.0 3.4 0.00012 39.4 5.1 33 131-163 12-47 (324)
58 1np6_A Molybdopterin-guanine d 73.5 4.1 0.00014 35.2 5.1 31 132-162 6-38 (174)
59 3ez9_A Para; DNA binding, wing 72.9 1.7 5.9E-05 42.8 2.8 37 126-162 105-150 (403)
60 3ug7_A Arsenical pump-driving 72.5 4 0.00014 39.4 5.2 35 129-163 22-59 (349)
61 3pg5_A Uncharacterized protein 72.3 1.9 6.4E-05 42.0 2.8 32 132-163 1-35 (361)
62 2pbr_A DTMP kinase, thymidylat 72.3 4.7 0.00016 34.5 5.2 31 134-164 2-34 (195)
63 2yvu_A Probable adenylyl-sulfa 72.1 4.3 0.00015 34.8 4.9 33 130-162 11-45 (186)
64 1a7j_A Phosphoribulokinase; tr 72.0 2.2 7.7E-05 40.1 3.2 29 131-159 4-34 (290)
65 2pez_A Bifunctional 3'-phospho 71.6 5.3 0.00018 34.0 5.4 31 132-162 5-37 (179)
66 1nn5_A Similar to deoxythymidy 70.9 4 0.00014 35.7 4.5 31 132-162 9-41 (215)
67 2jeo_A Uridine-cytidine kinase 70.6 3.2 0.00011 37.7 3.8 23 132-154 25-49 (245)
68 2f1r_A Molybdopterin-guanine d 70.5 3.2 0.00011 35.7 3.7 31 132-162 2-34 (171)
69 2wwf_A Thymidilate kinase, put 69.9 4.2 0.00014 35.5 4.4 32 131-162 9-42 (212)
70 3tqc_A Pantothenate kinase; bi 69.8 6.8 0.00023 37.4 6.1 32 124-155 83-117 (321)
71 3asz_A Uridine kinase; cytidin 69.8 2.9 9.8E-05 36.7 3.3 24 131-154 5-30 (211)
72 3kl4_A SRP54, signal recogniti 69.1 4.5 0.00015 40.5 4.8 31 132-162 97-129 (433)
73 1nks_A Adenylate kinase; therm 68.9 5.1 0.00017 34.2 4.7 30 133-162 2-33 (194)
74 3b9q_A Chloroplast SRP recepto 68.1 5.6 0.00019 37.6 5.1 31 132-162 100-132 (302)
75 1rj9_A FTSY, signal recognitio 67.4 6.4 0.00022 37.2 5.4 32 131-162 101-134 (304)
76 2obn_A Hypothetical protein; s 66.9 5.2 0.00018 38.7 4.6 108 131-238 151-289 (349)
77 1uj2_A Uridine-cytidine kinase 66.5 3.4 0.00012 37.7 3.1 39 113-154 6-46 (252)
78 3e70_C DPA, signal recognition 65.2 7.4 0.00025 37.2 5.4 32 131-162 128-161 (328)
79 2if2_A Dephospho-COA kinase; a 64.7 3.4 0.00011 36.0 2.6 26 133-162 2-29 (204)
80 3tr0_A Guanylate kinase, GMP k 64.3 4.6 0.00016 35.0 3.5 23 132-154 7-31 (205)
81 1sq5_A Pantothenate kinase; P- 63.9 4.6 0.00016 38.1 3.6 26 130-155 78-105 (308)
82 3h3e_A Uncharacterized protein 63.3 26 0.00087 32.4 8.5 69 352-425 167-235 (267)
83 2og2_A Putative signal recogni 63.0 7.7 0.00026 37.7 5.0 31 132-162 157-189 (359)
84 2i3b_A HCR-ntpase, human cance 62.4 5.6 0.00019 34.8 3.6 25 134-158 3-29 (189)
85 3kb2_A SPBC2 prophage-derived 62.2 5.8 0.0002 33.1 3.6 22 133-154 2-25 (173)
86 1zuh_A Shikimate kinase; alpha 62.1 5.8 0.0002 33.3 3.6 29 131-162 6-36 (168)
87 3ake_A Cytidylate kinase; CMP 61.4 5.9 0.0002 34.3 3.6 22 133-154 3-26 (208)
88 3aez_A Pantothenate kinase; tr 60.7 6.9 0.00024 37.1 4.2 27 130-156 88-116 (312)
89 2yhs_A FTSY, cell division pro 60.3 9 0.00031 38.9 5.1 31 132-162 293-325 (503)
90 1uf9_A TT1252 protein; P-loop, 59.8 5.6 0.00019 34.3 3.1 30 129-162 5-36 (203)
91 2grj_A Dephospho-COA kinase; T 59.8 6.2 0.00021 34.5 3.4 28 132-162 12-41 (192)
92 1jjv_A Dephospho-COA kinase; P 59.5 5.6 0.00019 34.6 3.1 26 133-162 3-30 (206)
93 1ye8_A Protein THEP1, hypothet 59.4 7.1 0.00024 33.6 3.7 21 134-154 2-24 (178)
94 4eun_A Thermoresistant glucoki 58.8 8 0.00027 33.6 4.0 24 131-154 28-53 (200)
95 3uie_A Adenylyl-sulfate kinase 58.7 9.5 0.00032 33.1 4.5 31 130-160 23-55 (200)
96 1cke_A CK, MSSA, protein (cyti 58.6 7.4 0.00025 34.3 3.8 22 133-154 6-29 (227)
97 1knq_A Gluconate kinase; ALFA/ 57.6 9 0.00031 32.2 4.1 26 129-154 5-32 (175)
98 3p32_A Probable GTPase RV1496/ 57.6 22 0.00074 34.1 7.2 34 129-162 76-111 (355)
99 3hjn_A DTMP kinase, thymidylat 56.9 7.7 0.00026 34.0 3.6 25 141-165 11-35 (197)
100 2xxa_A Signal recognition part 56.7 12 0.0004 37.4 5.2 31 132-162 100-133 (433)
101 3lnc_A Guanylate kinase, GMP k 56.4 5.5 0.00019 35.5 2.6 23 132-154 27-52 (231)
102 3a00_A Guanylate kinase, GMP k 55.5 5.6 0.00019 34.2 2.3 23 133-155 2-26 (186)
103 4edh_A DTMP kinase, thymidylat 55.3 14 0.00049 32.7 5.1 33 132-164 6-40 (213)
104 4tmk_A Protein (thymidylate ki 55.1 13 0.00046 33.0 4.9 33 132-164 3-38 (213)
105 3lv8_A DTMP kinase, thymidylat 55.0 13 0.00045 33.7 4.8 35 129-163 24-61 (236)
106 1ls1_A Signal recognition part 54.8 13 0.00043 34.9 4.9 32 131-162 97-130 (295)
107 1j8m_F SRP54, signal recogniti 54.4 25 0.00085 32.9 6.9 31 132-162 98-130 (297)
108 1kag_A SKI, shikimate kinase I 53.9 7.2 0.00025 32.7 2.8 22 133-154 5-28 (173)
109 2j41_A Guanylate kinase; GMP, 53.7 6.9 0.00024 33.8 2.7 23 132-154 6-30 (207)
110 2v3c_C SRP54, signal recogniti 53.2 41 0.0014 33.3 8.5 31 132-162 99-131 (432)
111 1e6c_A Shikimate kinase; phosp 53.1 8.7 0.0003 32.1 3.2 22 133-154 3-26 (173)
112 2p67_A LAO/AO transport system 52.4 24 0.00082 33.6 6.5 33 129-161 53-87 (341)
113 3d03_A Phosphohydrolase; glyce 51.9 47 0.0016 29.6 8.3 58 370-429 25-82 (274)
114 3tlx_A Adenylate kinase 2; str 51.5 21 0.0007 32.2 5.6 40 115-154 12-53 (243)
115 2vo1_A CTP synthase 1; pyrimid 50.1 15 0.00052 34.0 4.3 33 130-162 21-57 (295)
116 2woo_A ATPase GET3; tail-ancho 50.0 12 0.0004 35.7 3.8 31 133-163 19-52 (329)
117 2plr_A DTMP kinase, probable t 50.0 16 0.00056 31.4 4.6 29 132-161 4-34 (213)
118 3ec2_A DNA replication protein 49.7 28 0.00097 29.2 6.0 48 114-161 19-70 (180)
119 3kjh_A CO dehydrogenase/acetyl 48.9 6.1 0.00021 35.2 1.6 28 135-162 3-32 (254)
120 1kht_A Adenylate kinase; phosp 48.8 18 0.00062 30.5 4.6 26 133-158 4-31 (192)
121 1y63_A LMAJ004144AAA protein; 48.8 14 0.00049 31.5 3.9 23 131-153 9-33 (184)
122 3tau_A Guanylate kinase, GMP k 48.4 10 0.00035 33.2 2.9 24 131-154 7-32 (208)
123 2pt5_A Shikimate kinase, SK; a 48.1 13 0.00046 30.7 3.6 21 134-154 2-24 (168)
124 1qf9_A UMP/CMP kinase, protein 48.0 13 0.00046 31.4 3.6 23 132-154 6-30 (194)
125 2iyv_A Shikimate kinase, SK; t 47.2 11 0.00038 31.9 2.9 22 133-154 3-26 (184)
126 3io3_A DEHA2D07832P; chaperone 46.7 14 0.00049 35.5 3.9 31 132-162 18-52 (348)
127 3upu_A ATP-dependent DNA helic 46.6 20 0.00069 35.7 5.1 46 113-161 29-77 (459)
128 4i1u_A Dephospho-COA kinase; s 46.2 14 0.00049 32.8 3.5 29 130-162 7-37 (210)
129 2qm8_A GTPase/ATPase; G protei 45.8 21 0.00071 34.1 4.9 33 129-161 52-86 (337)
130 2j37_W Signal recognition part 45.7 20 0.00067 36.5 4.9 32 131-162 100-133 (504)
131 1znw_A Guanylate kinase, GMP k 45.7 13 0.00045 32.4 3.2 26 130-155 18-45 (207)
132 2ffh_A Protein (FFH); SRP54, s 45.4 20 0.00068 35.6 4.8 31 132-162 98-130 (425)
133 3t61_A Gluconokinase; PSI-biol 45.0 16 0.00054 31.6 3.6 23 132-154 18-42 (202)
134 3pzx_A Formate--tetrahydrofola 44.9 21 0.00073 36.1 4.8 35 129-163 54-94 (557)
135 1q3t_A Cytidylate kinase; nucl 44.9 18 0.00061 32.3 4.0 25 130-154 14-40 (236)
136 2qt1_A Nicotinamide riboside k 44.7 8.1 0.00028 33.6 1.6 24 131-154 20-45 (207)
137 1lvg_A Guanylate kinase, GMP k 44.5 14 0.00047 32.2 3.1 23 132-154 4-28 (198)
138 1xx6_A Thymidine kinase; NESG, 44.2 30 0.001 30.1 5.3 33 130-162 6-40 (191)
139 2eyu_A Twitching motility prot 44.1 17 0.00058 33.4 3.8 30 132-161 25-57 (261)
140 3iqw_A Tail-anchored protein t 43.8 15 0.00052 35.1 3.6 24 139-162 25-48 (334)
141 4eaq_A DTMP kinase, thymidylat 43.7 24 0.00082 31.5 4.7 33 131-164 25-59 (229)
142 2cdn_A Adenylate kinase; phosp 43.6 21 0.00073 30.6 4.3 23 132-154 20-44 (201)
143 3vaa_A Shikimate kinase, SK; s 43.5 20 0.00068 30.9 4.0 23 132-154 25-49 (199)
144 3a4m_A L-seryl-tRNA(SEC) kinas 43.1 26 0.00089 31.8 5.0 31 132-162 4-36 (260)
145 3v9p_A DTMP kinase, thymidylat 42.9 23 0.00078 31.8 4.4 34 131-164 24-63 (227)
146 1uf3_A Hypothetical protein TT 42.8 92 0.0032 26.6 8.5 67 359-429 8-74 (228)
147 3syl_A Protein CBBX; photosynt 42.6 23 0.00078 32.7 4.6 25 134-159 72-96 (309)
148 1m7g_A Adenylylsulfate kinase; 42.5 23 0.00077 30.9 4.3 32 131-162 24-58 (211)
149 3ld9_A DTMP kinase, thymidylat 42.5 19 0.00066 32.3 3.8 33 131-163 20-55 (223)
150 2c95_A Adenylate kinase 1; tra 42.4 18 0.0006 30.8 3.5 23 132-154 9-33 (196)
151 2vli_A Antibiotic resistance p 41.9 12 0.00041 31.5 2.3 24 131-154 4-29 (183)
152 2www_A Methylmalonic aciduria 41.7 56 0.0019 31.2 7.3 31 131-161 73-105 (349)
153 2w0m_A SSO2452; RECA, SSPF, un 41.3 27 0.00092 30.3 4.6 32 131-162 22-55 (235)
154 1vht_A Dephospho-COA kinase; s 41.3 19 0.00067 31.4 3.7 27 132-162 4-32 (218)
155 4e22_A Cytidylate kinase; P-lo 41.2 18 0.00062 32.7 3.5 24 131-154 26-51 (252)
156 1kgd_A CASK, peripheral plasma 40.7 19 0.00064 30.6 3.4 24 131-154 4-29 (180)
157 1zak_A Adenylate kinase; ATP:A 40.5 13 0.00043 32.8 2.3 20 134-154 10-29 (222)
158 1ukz_A Uridylate kinase; trans 39.5 20 0.00069 30.8 3.4 26 129-154 12-39 (203)
159 4hlc_A DTMP kinase, thymidylat 39.5 19 0.00065 31.7 3.2 31 134-165 4-36 (205)
160 2w58_A DNAI, primosome compone 38.9 83 0.0028 26.7 7.4 48 115-162 35-86 (202)
161 2v54_A DTMP kinase, thymidylat 38.7 17 0.00057 31.2 2.7 29 132-162 4-34 (204)
162 2woj_A ATPase GET3; tail-ancho 38.5 27 0.00092 33.6 4.4 31 133-163 18-53 (354)
163 1x6v_B Bifunctional 3'-phospho 38.3 38 0.0013 35.4 5.7 34 130-163 50-85 (630)
164 2kjq_A DNAA-related protein; s 38.1 39 0.0013 27.8 4.9 32 131-162 35-68 (149)
165 2f6r_A COA synthase, bifunctio 38.1 21 0.00073 32.9 3.5 27 132-162 75-103 (281)
166 3n70_A Transport activator; si 37.2 76 0.0026 25.5 6.5 27 135-161 27-55 (145)
167 2jaq_A Deoxyguanosine kinase; 36.9 26 0.00089 29.8 3.7 21 134-154 2-24 (205)
168 3do6_A Formate--tetrahydrofola 35.9 39 0.0013 34.0 5.0 35 129-163 40-80 (543)
169 2c5m_A CTP synthase; cytidine 35.8 36 0.0012 31.4 4.4 32 131-162 22-57 (294)
170 1dek_A Deoxynucleoside monopho 35.4 24 0.00081 32.1 3.3 22 133-154 2-25 (241)
171 4ehx_A Tetraacyldisaccharide 4 35.3 24 0.00081 33.5 3.4 30 129-158 33-66 (315)
172 2bdt_A BH3686; alpha-beta prot 35.2 24 0.00081 30.0 3.1 20 133-152 3-24 (189)
173 3kta_A Chromosome segregation 34.7 24 0.00083 29.6 3.1 22 133-154 27-50 (182)
174 1qhx_A CPT, protein (chloramph 34.5 25 0.00085 29.4 3.1 22 133-154 4-27 (178)
175 3jvv_A Twitching mobility prot 34.2 26 0.0009 33.7 3.6 29 133-161 124-155 (356)
176 1tev_A UMP-CMP kinase; ploop, 34.1 30 0.001 29.1 3.6 23 132-154 3-27 (196)
177 2gks_A Bifunctional SAT/APS ki 34.0 48 0.0017 33.9 5.7 31 132-162 372-404 (546)
178 1htw_A HI0065; nucleotide-bind 33.9 28 0.00096 29.2 3.3 25 130-154 31-57 (158)
179 1aky_A Adenylate kinase; ATP:A 33.6 34 0.0012 29.9 4.0 23 132-154 4-28 (220)
180 2b8t_A Thymidine kinase; deoxy 33.5 48 0.0016 29.6 5.0 34 129-162 9-44 (223)
181 1yrb_A ATP(GTP)binding protein 33.5 38 0.0013 30.2 4.4 30 132-162 14-45 (262)
182 1via_A Shikimate kinase; struc 33.4 27 0.00091 29.2 3.1 22 133-154 5-28 (175)
183 1gtv_A TMK, thymidylate kinase 33.4 13 0.00045 32.2 1.1 28 134-161 2-31 (214)
184 2yvt_A Hypothetical protein AQ 33.4 79 0.0027 27.9 6.6 68 359-429 8-100 (260)
185 3lw7_A Adenylate kinase relate 33.0 36 0.0012 27.8 3.9 26 133-162 2-29 (179)
186 3h63_A Serine/threonine-protei 32.9 1.4E+02 0.0049 28.0 8.4 70 358-429 61-130 (315)
187 3bos_A Putative DNA replicatio 32.8 1.1E+02 0.0038 26.2 7.4 46 115-162 37-84 (242)
188 3cm0_A Adenylate kinase; ATP-b 32.3 30 0.001 29.0 3.3 22 133-154 5-28 (186)
189 3iij_A Coilin-interacting nucl 32.0 35 0.0012 28.5 3.7 23 132-154 11-35 (180)
190 3icf_A PPT, serine/threonine-p 32.0 1.7E+02 0.0058 27.8 8.8 69 359-429 66-134 (335)
191 2bwj_A Adenylate kinase 5; pho 31.8 30 0.001 29.3 3.3 23 132-154 12-36 (199)
192 1zp6_A Hypothetical protein AT 31.8 27 0.00093 29.5 2.9 23 131-153 8-32 (191)
193 2ewv_A Twitching motility prot 31.8 32 0.0011 33.3 3.7 27 131-157 135-163 (372)
194 2orw_A Thymidine kinase; TMTK, 31.5 44 0.0015 28.6 4.2 30 132-162 3-35 (184)
195 3e7a_A PP-1A, serine/threonine 31.2 1.6E+02 0.0054 27.5 8.3 71 356-429 55-125 (299)
196 1g8f_A Sulfate adenylyltransfe 31.0 43 0.0015 34.0 4.7 27 130-156 393-421 (511)
197 3ney_A 55 kDa erythrocyte memb 30.3 42 0.0014 29.4 3.9 27 128-154 15-43 (197)
198 1ihu_A Arsenical pump-driving 30.0 33 0.0011 35.3 3.7 31 132-162 8-40 (589)
199 1z6g_A Guanylate kinase; struc 29.9 27 0.00093 30.7 2.6 23 132-154 23-47 (218)
200 2bbw_A Adenylate kinase 4, AK4 29.7 43 0.0015 29.8 4.0 23 132-154 27-51 (246)
201 1kyq_A Met8P, siroheme biosynt 29.4 29 0.00098 32.2 2.8 20 134-154 161-181 (274)
202 2rhm_A Putative kinase; P-loop 29.2 35 0.0012 28.7 3.2 23 132-154 5-29 (193)
203 3trf_A Shikimate kinase, SK; a 29.1 43 0.0015 28.0 3.8 23 132-154 5-29 (185)
204 2ie4_C PP2A-alpha;, serine/thr 28.9 1.7E+02 0.0057 27.4 8.1 71 357-430 50-120 (309)
205 4a0g_A Adenosylmethionine-8-am 28.7 41 0.0014 36.4 4.2 32 131-162 33-72 (831)
206 1p9r_A General secretion pathw 28.5 45 0.0015 32.9 4.2 30 132-161 167-198 (418)
207 1s96_A Guanylate kinase, GMP k 28.1 38 0.0013 30.0 3.3 25 130-154 14-40 (219)
208 1nnw_A Hypothetical protein; s 28.0 1.6E+02 0.0055 25.8 7.7 68 359-429 4-74 (252)
209 1ccw_A Protein (glutamate muta 27.6 48 0.0016 26.9 3.6 88 331-434 41-128 (137)
210 3lfu_A DNA helicase II; SF1 he 27.6 34 0.0012 35.3 3.3 33 388-427 348-380 (647)
211 1tue_A Replication protein E1; 27.6 1.2E+02 0.004 27.0 6.3 41 113-154 40-82 (212)
212 1fjm_A Protein serine/threonin 27.4 1.9E+02 0.0065 27.3 8.3 71 357-430 57-127 (330)
213 1wao_1 Serine/threonine protei 27.3 1.9E+02 0.0064 28.5 8.7 70 358-429 214-283 (477)
214 2j9r_A Thymidine kinase; TK1, 27.2 83 0.0028 27.9 5.3 34 129-162 25-60 (214)
215 3ib7_A ICC protein; metallopho 27.1 85 0.0029 28.8 5.8 59 369-429 49-111 (330)
216 3nwj_A ATSK2; P loop, shikimat 26.7 42 0.0014 30.5 3.4 23 132-154 48-72 (250)
217 1cr0_A DNA primase/helicase; R 26.5 69 0.0024 29.3 5.0 32 131-162 34-68 (296)
218 2olj_A Amino acid ABC transpor 26.2 39 0.0013 31.0 3.0 24 131-154 49-74 (263)
219 3igf_A ALL4481 protein; two-do 25.3 25 0.00087 34.2 1.7 24 139-162 11-34 (374)
220 3o38_A Short chain dehydrogena 25.1 1E+02 0.0035 27.4 5.8 85 130-219 20-111 (266)
221 1l8q_A Chromosomal replication 25.1 1.3E+02 0.0046 27.6 6.8 46 117-162 22-69 (324)
222 3ll8_A Serine/threonine-protei 24.7 2.3E+02 0.008 27.1 8.3 71 356-429 69-139 (357)
223 3r20_A Cytidylate kinase; stru 24.7 57 0.0019 29.3 3.8 23 132-154 9-33 (233)
224 3b85_A Phosphate starvation-in 24.7 45 0.0016 29.2 3.1 24 132-156 22-47 (208)
225 1b0u_A Histidine permease; ABC 24.2 44 0.0015 30.5 3.0 24 131-154 31-56 (262)
226 2qz4_A Paraplegin; AAA+, SPG7, 24.1 1.3E+02 0.0045 26.4 6.3 42 113-154 13-63 (262)
227 2h92_A Cytidylate kinase; ross 24.0 41 0.0014 29.2 2.7 22 133-154 4-27 (219)
228 2zu0_C Probable ATP-dependent 24.0 53 0.0018 30.0 3.6 24 131-154 45-70 (267)
229 2pcj_A ABC transporter, lipopr 23.8 38 0.0013 30.1 2.4 23 132-154 30-54 (224)
230 1su1_A Hypothetical protein YF 23.8 66 0.0023 28.0 4.0 68 359-429 28-99 (208)
231 2d2e_A SUFC protein; ABC-ATPas 23.6 52 0.0018 29.7 3.4 22 132-153 29-52 (250)
232 2vp4_A Deoxynucleoside kinase; 23.5 36 0.0012 30.1 2.2 24 130-153 18-43 (230)
233 2yz2_A Putative ABC transporte 23.4 46 0.0016 30.4 3.0 24 131-154 32-57 (266)
234 1s3l_A Hypothetical protein MJ 23.2 1.7E+02 0.0057 24.9 6.5 59 359-429 28-86 (190)
235 1njg_A DNA polymerase III subu 23.2 1.3E+02 0.0046 25.4 6.1 39 116-155 30-70 (250)
236 2onk_A Molybdate/tungstate ABC 23.2 55 0.0019 29.4 3.4 22 133-154 25-48 (240)
237 3be4_A Adenylate kinase; malar 23.1 50 0.0017 28.7 3.1 27 133-162 6-34 (217)
238 3bl4_A Uncharacterized protein 23.0 1.7E+02 0.0059 23.4 6.0 79 346-430 8-90 (124)
239 3oig_A Enoyl-[acyl-carrier-pro 22.8 1.8E+02 0.0063 25.7 7.0 86 130-219 5-97 (266)
240 5nul_A Flavodoxin; electron tr 22.8 59 0.002 25.9 3.3 58 359-420 49-109 (138)
241 4b4t_W RPN10, 26S proteasome r 22.7 1.8E+02 0.0061 26.7 6.8 83 334-428 92-177 (268)
242 2v9p_A Replication protein E1; 22.7 67 0.0023 30.2 4.0 25 130-154 124-150 (305)
243 1vpl_A ABC transporter, ATP-bi 22.6 50 0.0017 30.0 3.0 24 131-154 40-65 (256)
244 1ji0_A ABC transporter; ATP bi 22.5 47 0.0016 29.8 2.8 23 132-154 32-56 (240)
245 1nij_A Hypothetical protein YJ 22.4 36 0.0012 32.0 2.1 24 131-154 3-28 (318)
246 2nq2_C Hypothetical ABC transp 22.3 48 0.0016 30.1 2.9 23 132-154 31-55 (253)
247 1g6h_A High-affinity branched- 22.2 48 0.0016 30.1 2.8 23 132-154 33-57 (257)
248 1ak2_A Adenylate kinase isoenz 22.1 75 0.0026 27.9 4.1 23 132-154 16-40 (233)
249 2hly_A AGR_C_4178P, hypothetic 22.1 25 0.00084 30.7 0.7 29 119-147 166-196 (207)
250 2r8r_A Sensor protein; KDPD, P 21.8 64 0.0022 29.0 3.5 27 136-162 12-38 (228)
251 3nva_A CTP synthase; rossman f 21.7 88 0.003 31.8 4.8 31 132-162 3-37 (535)
252 2jnb_A NHP2-like protein 1; sp 21.6 1.9E+02 0.0065 23.8 6.1 44 100-154 93-136 (144)
253 2npi_A Protein CLP1; CLP1-PCF1 21.4 21 0.0007 35.9 0.1 43 113-159 123-167 (460)
254 3qks_A DNA double-strand break 21.2 77 0.0026 27.4 3.9 24 132-155 23-48 (203)
255 3gdg_A Probable NADP-dependent 21.2 95 0.0033 27.6 4.7 87 129-219 17-111 (267)
256 2ged_A SR-beta, signal recogni 21.0 95 0.0032 25.8 4.4 22 129-150 45-68 (193)
257 2ixe_A Antigen peptide transpo 21.0 62 0.0021 29.6 3.3 24 131-154 44-69 (271)
258 2ihy_A ABC transporter, ATP-bi 20.9 53 0.0018 30.3 2.9 24 131-154 46-71 (279)
259 1mv5_A LMRA, multidrug resista 20.8 54 0.0019 29.4 2.9 25 131-155 27-53 (243)
260 2pjz_A Hypothetical protein ST 20.7 49 0.0017 30.3 2.6 23 132-154 30-54 (263)
261 4fcw_A Chaperone protein CLPB; 20.6 1.1E+02 0.0039 27.7 5.2 32 130-161 45-78 (311)
262 3fb4_A Adenylate kinase; psych 20.4 71 0.0024 27.4 3.5 21 134-154 2-24 (216)
263 1ly1_A Polynucleotide kinase; 20.4 64 0.0022 26.6 3.1 20 133-152 3-24 (181)
264 2cbz_A Multidrug resistance-as 20.4 66 0.0023 28.7 3.3 24 131-154 30-55 (237)
265 4ag6_A VIRB4 ATPase, type IV s 20.2 57 0.002 31.4 3.1 30 132-162 38-67 (392)
266 2oap_1 GSPE-2, type II secreti 20.2 49 0.0017 33.5 2.7 29 132-161 260-290 (511)
267 1lw7_A Transcriptional regulat 20.1 57 0.0019 31.1 3.0 23 132-154 170-194 (365)
No 1
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=7.1e-78 Score=620.89 Aligned_cols=389 Identities=30% Similarity=0.437 Sum_probs=341.9
Q ss_pred cCHHHHHHHhCCeeccc-CCCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCCCCceEEE
Q 013570 27 WTINEIAESVNGKILKW-GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ 105 (440)
Q Consensus 27 ~~~~~l~~~~~~~~~~~-~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~~~~~~i~ 105 (440)
|++++|+++++|++.+. ..|+++++|||+++| |++|||++|.++|||+|+++|++ +||.++|++++.+ +++|+|.
T Consensus 4 ~~l~~i~~~~~~~~~~~~~~i~~i~~Dsr~v~~--g~lf~al~G~~~dgh~f~~~a~~-~Ga~~vv~~~~~~-~~~p~i~ 79 (452)
T 1gg4_A 4 VTLSQLTDILNGELQGADITLDAVTTDTRKLTP--GCLFVALKGERFDAHDFADQAKA-GGAGALLVSRPLD-IDLPQLI 79 (452)
T ss_dssp EEHHHHHHHTTEEEESCCCEESCEESCGGGCCT--TCEEECCBCSSCBTTTTHHHHHH-TTCCEEEESSCCS-CSSCEEE
T ss_pred CcHHHHHHHhCCEEeCCCceEEEEEEeCCCcCC--CcEEEEeCCCCCCHHHHHHHHHH-cCCEEEEECCCcC-CCCCEEE
Confidence 69999999999987652 238999999999999 99999999999999999999999 9999999998754 2689999
Q ss_pred EcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCC
Q 013570 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185 (440)
Q Consensus 106 V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~ 185 (440)
|+ |++++|+.|+.+++. ..+.++|+||||||||||++||+++|++.| +++.+.||+|+++|.|++++++..++
T Consensus 80 v~-----~~~~~l~~la~~~~~-~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~~t~g~~n~~ig~p~t~~~~~~~~ 152 (452)
T 1gg4_A 80 VK-----DTRLAFGELAAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILSQCG-NTLYTAGNLNNDIGVPMTLLRLTPEY 152 (452)
T ss_dssp ES-----CHHHHHHHHHHHHHH-HSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEEECCTTCCSTTHHHHHHTTCCTTC
T ss_pred EC-----CHHHHHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEeeccccccCCcchhHHHHcCCCCC
Confidence 99 999999999996654 356899999999999999999999997777 67789999999999999999988889
Q ss_pred cEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhh--cCC
Q 013570 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVP 263 (440)
Q Consensus 186 ~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~--~~~ 263 (440)
+++|+|+|+++.+++.++.++++|+++|||||++||+|+|||+|+|+++|++||+.+++++.+|+|.||+....+ ...
T Consensus 153 d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~ 232 (452)
T 1gg4_A 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 (452)
T ss_dssp SEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHT
T ss_pred cEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccCCEEEEeCCcHHHHHHHHhhc
Confidence 999999999999999998888899999999999999999999999999999999998888999999999987766 322
Q ss_pred CCCcEEEEeccC-CcceEEEeceEEEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 013570 264 RGVRKVFFGWRR-GCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342 (440)
Q Consensus 264 ~~~~vi~~g~~~-~ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~ 342 (440)
..++++||.+. ++++++.+ +.....+..|.+...+....+++|++|+||++|+++|++++..+|++++.|+++|++
T Consensus 233 -~~~~~~~g~~~~~~d~~~~~--~~~~~~g~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~ 309 (452)
T 1gg4_A 233 -SRKVWRFSPNAANSDFTATN--IHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLAN 309 (452)
T ss_dssp -TSEEEEECSSCTTCSBEEEE--EEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred -CCCEEEEeCCCCCCcEEEEE--EEEcCCceEEEEEECCCEEEEEeCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 36899999865 57888887 777767778888654222378999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEE
Q 013570 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422 (440)
Q Consensus 343 ~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~v 422 (440)
|+++|||||++...+++++|+|||||||+|++++|+++++++ +|+++|||+|.|+|+++++.|++|++.+.+..+|.+
T Consensus 310 ~~~~~gR~e~~~~~~~~~vidDsyahnp~s~~~~l~~l~~~~--~~~i~V~G~~~e~g~~~~~~~~~~~~~~~~~~~d~v 387 (452)
T 1gg4_A 310 LKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP--GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRV 387 (452)
T ss_dssp CCCCTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSS--SEEEEEECCCCCCTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred CCCCCCCceEEECCCCcEEEEeCCCCCHHHHHHHHHHHHhcc--CCEEEEECCccccCChhHHHHHHHHHHHHHcCCCEE
Confidence 999999999998767899999999999999999999999864 689999999999999999999999999987569999
Q ss_pred EEEcCchhh
Q 013570 423 GLVGDRVVV 431 (440)
Q Consensus 423 i~~G~~~~~ 431 (440)
|++|+....
T Consensus 388 i~~g~~~~~ 396 (452)
T 1gg4_A 388 LSVGKQSHA 396 (452)
T ss_dssp EEESSSTHH
T ss_pred EEECcCHHH
Confidence 999987753
No 2
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=4.9e-77 Score=615.30 Aligned_cols=382 Identities=25% Similarity=0.402 Sum_probs=342.6
Q ss_pred cCHHHHHHHhCCeecc-c----CCCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCCCCc
Q 013570 27 WTINEIAESVNGKILK-W----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDK 101 (440)
Q Consensus 27 ~~~~~l~~~~~~~~~~-~----~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~~~~ 101 (440)
|++++|+++++|++ . . ..|+++++|||+++| |++|||++|. +|||+|+++|++ +||.++|++++.+ ++
T Consensus 3 ~~~~~i~~~~~~~~-~~~~~~~~~i~~i~~Dsr~v~~--g~lF~al~G~-~dgh~~~~~a~~-~Ga~~vv~~~~~~--~~ 75 (454)
T 2am1_A 3 LTIHEIAQVVGAKN-DISIFEDTQLEKAEFDSRLIGT--GDLFVPLKGA-RDGHDFIETAFE-NGAAVTLSEKEVS--NH 75 (454)
T ss_dssp CBHHHHHHHHTCSS-CSTTSCCCBCCCEESCGGGCCT--TCEECCCBSS-SBGGGGHHHHHH-HTCSEEEESSCCC--SS
T ss_pred CcHHHHHHHhCCcc-cCCCccCceeeeEEEeCCCCCC--CCEEEEccCC-cchHHHHHHHHH-CCCEEEEECCCCC--CC
Confidence 79999999999986 3 1 248999999999999 9999999999 999999999999 9999999998754 57
Q ss_pred eEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcc
Q 013570 102 GFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI 181 (440)
Q Consensus 102 ~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~ 181 (440)
|+|.|+ |++++|+.|+.+++. ..+.++|+||||||||||++||+++|++.| ++..+.|++|+++|.|++++++
T Consensus 76 p~i~v~-----~~~~al~~la~~~~~-~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~~s~g~~n~~ig~p~t~~~~ 148 (454)
T 2am1_A 76 PYILVD-----DVLTAFQSLASYYLE-KTTVDVFAVTGSNGKTTTKDMLAHLLSTRY-KTYKTQGNYNNEIGLPYTVLHM 148 (454)
T ss_dssp CEEECS-----CHHHHHHHHHHHHHH-HHCCEEEEEECCCSSSCHHHHHHHHHTTTS-CEEECCTTCCSTTHHHHHHHTC
T ss_pred CEEEEC-----CHHHHHHHHHHHHhh-CCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEeecCCccCcccchHHHHhcC
Confidence 999999 999999999996554 236789999999999999999999997777 5778999999999999999998
Q ss_pred cCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhc
Q 013570 182 DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261 (440)
Q Consensus 182 ~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~ 261 (440)
..+++++|+|+|+++.+++.+++++++|+++|||||++||+|+|||+|+|+++|++||+.+++++.+|+|.|| ....+.
T Consensus 149 ~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~~~~V~n~dd-~~~~~~ 227 (454)
T 2am1_A 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADP-IVEDYL 227 (454)
T ss_dssp CTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTCEEEEESCG-GGGGGC
T ss_pred CCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccCCEEEEEcHH-HHHHHH
Confidence 8899999999999999999998888899999999999999999999999999999999988888999999999 777666
Q ss_pred CCCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Q 013570 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341 (440)
Q Consensus 262 ~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~ 341 (440)
.. ..++++||.+..+++ .+ +.....+..|.+...+. .+++|++|.||++|+++|++++..+|++++.|+++|+
T Consensus 228 ~~-~~~~~~~g~~~~~d~--~~--i~~~~~~~~~~~~~~~~--~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~ 300 (454)
T 2am1_A 228 PI-DKKVVRFGQGAELEI--TD--LVERKDSLTFKANFLEQ--ALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQ 300 (454)
T ss_dssp CS-SSEEEEESTTSSBCE--EE--EEECSSCEEEEETTCSS--EEEESSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHGG
T ss_pred hc-CCcEEEEeCCCCCce--ee--eEEeCCceEEEEEecCc--EEEecCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33 368999998766676 55 66666777888764322 6889999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCC---CcEEEEEcCCCCCChhcHHHHHHHHHHHHHcC
Q 013570 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN---GKRVVILGDMLELGSTERESHEKILSYCCDAC 418 (440)
Q Consensus 342 ~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~---~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~ 418 (440)
+|+++|||||++...+++++|||||||||+|++++|+++++.+ . +|+++|||+|.|+|+++++.|++|++.+.+..
T Consensus 301 ~~~~~~gR~e~~~~~~~~~iiDDsyahnp~s~~~~l~~l~~~~-~~~~~~~i~V~G~~~e~G~~~~~~~~~~~~~~~~~~ 379 (454)
T 2am1_A 301 HLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP-ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDV 379 (454)
T ss_dssp GCCCCCCCSCEECCTTTCEEEEECSCCSHHHHHHHHHHHTTSC-CCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTTT
T ss_pred hCCCccCCeeEEECCCCeEEEEeCCCCCHHHHHHHHHHHHhcc-cccCCCEEEEECCchhcCcHHHHHHHHHHHHHHhcC
Confidence 9999999999998656788999999999999999999999875 4 78999999999999999999999999988766
Q ss_pred CCEEEEEcCchhh
Q 013570 419 IDLIGLVGDRVVV 431 (440)
Q Consensus 419 ~d~vi~~G~~~~~ 431 (440)
+|.||++|+....
T Consensus 380 ~d~vi~~g~~~~~ 392 (454)
T 2am1_A 380 LDIVIFYGEDIAQ 392 (454)
T ss_dssp CSEEEEEESTTHH
T ss_pred CCEEEEECcCHHH
Confidence 8999999987653
No 3
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=9.7e-72 Score=585.84 Aligned_cols=387 Identities=20% Similarity=0.217 Sum_probs=326.6
Q ss_pred CCCCCccCHHHHHHHhCCeecc---------cCCCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEE
Q 013570 21 PSNSPIWTINEIAESVNGKILK---------WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91 (440)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~---------~~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv 91 (440)
|....+|++++|++.+++.+.. +..|++|++|||+++| |+||||++|+++|||+|+++|++ +||.++|
T Consensus 28 ~~~m~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~v~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~avv 104 (535)
T 2wtz_A 28 PNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSP--GDLFAALTGSTTHGARHVGDAIA-RGAVAVL 104 (535)
T ss_dssp CSCCCCCBHHHHHHHHTCEESSCC--CCSTTTCBCCEEESCGGGCCT--TEEEEECBCSSCBGGGGHHHHHH-TTCCEEE
T ss_pred CcccccccHHHHHhhccccccccccccccCCCcceeeEEecCCcCCC--CCEEEEeccccccHHHHHHHHHH-CCCeEEE
Confidence 4444447999999999987541 2249999999999999 99999999999999999999999 9999999
Q ss_pred ecccc----CC-CCceEEEEcCCCCccHHHHHHHHHH-HhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEec
Q 013570 92 GNQVC----NN-WDKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165 (440)
Q Consensus 92 ~~~~~----~~-~~~~~i~V~~~~~~d~~~al~~la~-~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~ 165 (440)
++++. .. +++|+|.|+ |++++|+.|++ ++.+|+.++++|+||||||||||++||+++|++.|+++. +.
T Consensus 105 ~~~~~~~~~~~~~~~~~i~v~-----d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g-~~ 178 (535)
T 2wtz_A 105 TDPAGVAEIAGRAAVPVLVHP-----APRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAG-LI 178 (535)
T ss_dssp ECHHHHHHHCSCCSSCEEECS-----SSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEE-EE
T ss_pred EecCcccccccCCCceEEEEC-----CHHHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEE-EE
Confidence 99742 11 158999999 99999999998 667777789999999999999999999999999998874 55
Q ss_pred CcCCCCcc---hhhHH------------hc-ccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHH
Q 013570 166 GNWNNRVG---VALSL------------IG-IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229 (440)
Q Consensus 166 g~~n~~~g---~p~~l------------~~-~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e 229 (440)
|+.++.++ +|.++ .. .+.+++++|||+| ++.+++.++.. ++|+++|||||++||+|+|||+|
T Consensus 179 gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvg-s~~l~~~rl~~-~~p~vaViTNI~~DHld~~gs~e 256 (535)
T 2wtz_A 179 GTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVS-SHALALGRVDG-TRFAVGAFTNLSRDHLDFHPSMA 256 (535)
T ss_dssp SSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECC-HHHHHTTTTTT-CCEEEEEECCCCSCCTTTSSSHH
T ss_pred CCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECC-Ccccccccccc-CCcCEEEEcCCChHHhhhcCCHH
Confidence 55544443 44332 22 2578999999999 66666777765 79999999999999999999999
Q ss_pred HHHHHHHHhcccCC--CCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCc-ceEEEeceEEEc-CCeEEEEEeec-CeEE
Q 013570 230 DVARAKGEIFQESK--LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC-DVRLVAAQVANG-GLGVQVVLEKE-REMV 304 (440)
Q Consensus 230 ~~~~~K~~i~~~~~--~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~a-d~~~~~~~i~~~-~~~~~f~~~~~-~~~~ 304 (440)
+|+++|++||+.++ +.+.+|+|.||+....+.... .++++||.+..+ ++++.+ +... ..+..|.+... +...
T Consensus 257 ~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~-~~v~~~g~~~~~~d~~~~~--i~~~~~~g~~f~~~~~~~~~~ 333 (535)
T 2wtz_A 257 DYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA-ADAITVSAADRPAHWRATD--VAPTDAGGQQFTAIDPAGVGH 333 (535)
T ss_dssp HHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHH-SSCEEEESSSSCCSEEEEE--EEEETTTEEEEEEECTTSCEE
T ss_pred HHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhc-CCEEEEecCCCcCcEEEEE--EEEcCCCCeEEEEEeCCceEE
Confidence 99999999998765 678999999999887776221 168999987666 888887 7766 67788888654 2313
Q ss_pred EEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccc
Q 013570 305 KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (440)
Q Consensus 305 ~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~ 384 (440)
.++++++|.||++|+++|++++..+|++++.|+++|++|+ +|||||++...+++++|+| |||||+||+++|++++ +.
T Consensus 334 ~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~~~~-~~gR~e~v~~~~~~~viiD-yahNP~s~~aal~~l~-~~ 410 (535)
T 2wtz_A 334 HIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQIDRGQGFLALVD-YAHKPEALRSVLTTLA-HP 410 (535)
T ss_dssp EEEESCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTCC-CTTSSEECCSSCSSEEEEE-CCCSHHHHHHHHHTTC-CS
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCC-CCCceEEEEcCCCcEEEEE-CCCCHHHHHHHHHHhh-CC
Confidence 7899999999999999999999999999999999999999 9999999986557889999 9999999999999998 64
Q ss_pred CCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 385 ~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
.+|+++|||+ .|+++...|+.|++.+.+. +|.++++++.+
T Consensus 411 -~~r~i~V~G~---~gdr~~~~~~~~~~~a~~~-~d~vi~~~~~~ 450 (535)
T 2wtz_A 411 -DRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADLVVVTDDNP 450 (535)
T ss_dssp -SSCEEEEECC---CTTSCGGGHHHHHHHHHHH-CSEEEECCSCC
T ss_pred -CCcEEEEECC---CCccchhhHHHHHHHHHhc-CCEEEEcCCCC
Confidence 5789999999 5777777788899988775 89999998765
No 4
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=6.4e-71 Score=575.60 Aligned_cols=380 Identities=19% Similarity=0.202 Sum_probs=314.4
Q ss_pred CHHHHHHHhCCeecc-cCCCceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccC-------C-
Q 013570 28 TINEIAESVNGKILK-WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-------N- 98 (440)
Q Consensus 28 ~~~~l~~~~~~~~~~-~~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~-------~- 98 (440)
++++|.+.+.. .+ +..|++|++|||+++| |+||||++|+++|||+|+++|++ +||.++|++++.. .
T Consensus 4 ~~~~l~~~~~~--~~~~~~i~~v~~DSR~v~~--g~lFval~G~~~DGh~fi~~A~~-~GA~avv~~~~~~~~~~e~~~~ 78 (498)
T 1e8c_A 4 NLRDLLAPWVP--DAPSRALREMTLDSRVAAA--GDLFVAVVGHQADGRRYIPQAIA-QGVAAIIAEAKDEATDGEIREM 78 (498)
T ss_dssp BHHHHHTTTCT--TCCCCBCCCEESCGGGCCT--TCEEEECBCSSCBGGGGHHHHHH-TTCSEEEEECTTTCCTTCEEEE
T ss_pred hHHHHHhhccc--CCCCceeeeEEeeCcCCCC--CCEEEEecCCcCCHHHHHHHHHH-CCCeEEEEcCcccccccccccc
Confidence 46666654331 11 2349999999999999 99999999999999999999999 9999999997631 1
Q ss_pred CCceEEEEcCCCCccHHHHHHHHHH-HhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeE--EecCcCCCCcchh
Q 013570 99 WDKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGNWNNRVGVA 175 (440)
Q Consensus 99 ~~~~~i~V~~~~~~d~~~al~~la~-~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~--~t~g~~n~~~g~p 175 (440)
.++|+|.|+ |++++|+.|++ ++++|+.+.++|+||||||||||++||+++|++.|+++. ++.++.++..++|
T Consensus 79 ~~~~~i~V~-----d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~ 153 (498)
T 1e8c_A 79 HGVPVIYLS-----QLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIP 153 (498)
T ss_dssp TTEEEEEET-----THHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBC
T ss_pred CCccEEEEC-----CHHHHHHHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeee
Confidence 157999999 99999999999 667788889999999999999999999999999998863 3444433332333
Q ss_pred --------hH----Hhcc-cCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccC
Q 013570 176 --------LS----LIGI-DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242 (440)
Q Consensus 176 --------~~----l~~~-~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~ 242 (440)
.+ +..+ +.+++++|+|+| ++.+++.++.. ++|+++|||||++||+++|||+|+|+++|++||+.
T Consensus 154 ~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvg-s~~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~- 230 (498)
T 1e8c_A 154 TENTTGSAVDVQHELAGLVDQGATFCAMEVS-SHGLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE- 230 (498)
T ss_dssp CSSSSCCHHHHHHHHHHHHHTTCCEEEEECC-HHHHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCCEEEEEcC-Cchhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-
Confidence 12 2222 678999999998 56555667765 69999999999999999999999999999999987
Q ss_pred CCCcEEEEeCCcHHHHhhcCCCCC---cEEEEeccCCc---ceEEEeceEEEcCCeEEEEEeec-CeEEEEEeCcCcHHH
Q 013570 243 KLGDVCVLNADDPLVANLTVPRGV---RKVFFGWRRGC---DVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHL 315 (440)
Q Consensus 243 ~~~~~~Vln~dd~~~~~~~~~~~~---~vi~~g~~~~a---d~~~~~~~i~~~~~~~~f~~~~~-~~~~~~~l~l~G~~n 315 (440)
++++.+|+|.||+....+...... ++++||.+.++ ++++.+ +.....+..|.+... +.. .+.+|++|.||
T Consensus 231 ~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~~~~~~~d~~~~~--~~~~~~g~~f~~~~~~~~~-~~~l~l~G~hn 307 (498)
T 1e8c_A 231 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATE--VNYHDSGATIRFSSSWGDG-EIESHLMGAFN 307 (498)
T ss_dssp SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCCTTTCSEEEEEEE--EEECSSCEEEEEEETTCCE-EEEECSCSHHH
T ss_pred CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEecCCCCCcCCEEEEE--EEEcCCceEEEEEECCceE-EEEecCCcHHH
Confidence 667899999999988877622112 78889876656 888888 877777888888654 233 78999999999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcC
Q 013570 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395 (440)
Q Consensus 316 v~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~ 395 (440)
++|+++|++++..+|++++.|+++|++|+++|||||++...+++++|+| |||||+||+++|++++++. .+|+++|||+
T Consensus 308 v~NalaAia~~~~lGi~~~~i~~~L~~~~~~~gR~e~v~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~-~~r~i~V~G~ 385 (498)
T 1e8c_A 308 VSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVD-YAHTPDALEKALQAARLHC-AGKLWCVFGC 385 (498)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHGGGCCCCTTSSEEECCTTSCEEEEE-CCCSHHHHHHHHHHHHHTC-SSCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEcCCCCEEEEE-CCCCHHHHHHHHHHHHhhC-CCCEEEEECC
Confidence 9999999999999999999999999999999999999986557799999 9999999999999999876 5789999998
Q ss_pred CCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 396 MLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 396 m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
.|+++...+..|++.+... +|.++++|+.+
T Consensus 386 ---g~dr~~~~~~~~~~~~~~~-~d~vi~~~~~~ 415 (498)
T 1e8c_A 386 ---GGDRDKGKRPLMGAIAEEF-ADVAVVTDDNP 415 (498)
T ss_dssp ---CSSSCSTHHHHHHHHHHHH-CSEEEECCSCC
T ss_pred ---CCCcchhHHHHHHHHHHhC-CCEEEEcCCCC
Confidence 6666655556688876655 89999998764
No 5
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.1e-50 Score=424.80 Aligned_cols=319 Identities=16% Similarity=0.113 Sum_probs=243.2
Q ss_pred CCCeEEEeccccCCC----------CceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHH
Q 013570 85 KGCVGVIGNQVCNNW----------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 85 ~Ga~~vv~~~~~~~~----------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL 154 (440)
.++..||.++..+.. ++|++.-. ..++.+. ....++||||||||||||++||+++|
T Consensus 79 ~~~d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~-----------e~l~~~~---~~~~~vIaVTGTnGKTTTt~li~~iL 144 (524)
T 3hn7_A 79 PAPDLVVVGNAMKRGMDVIEYMLDTGLRYTSGP-----------QFLSEQV---LQSRHVIAVAGTHGKTTTTTMLAWIL 144 (524)
T ss_dssp SCCSEEEECTTCCTTSHHHHHHHHHTCCEEEHH-----------HHHHHHT---GGGSEEEEEECSSCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCHHHHHHHHCCCcEEEHH-----------HHHHHHH---hccCcEEEEECCCCHHHHHHHHHHHH
Confidence 467788887765431 56766433 1223221 12368999999999999999999999
Q ss_pred HhCCCCeEE----------ecCcCCCCcchhhHHhccc------CCCcEEEEeeccCCcchHHhhccc--cCCcEEEEcC
Q 013570 155 ESLGVNVFQ----------SYGNWNNRVGVALSLIGID------RAVDIAVLEMGMSGKGEILELARM--ARPEIRVVLN 216 (440)
Q Consensus 155 ~~~g~~~~~----------t~g~~n~~~g~p~~l~~~~------~~~~~~VlE~g~~~~g~~~~~~~~--~~p~vaviTN 216 (440)
++.|+++.. |.+|+|+.+|.|..+...+ .+++++|+|+|+++.+.+.++..+ ++|+++||||
T Consensus 145 ~~~G~~~~~~iGg~~~~~~T~~nln~~ig~~~~~~~~~~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTN 224 (524)
T 3hn7_A 145 HYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNN 224 (524)
T ss_dssp HHTTCCCEEECSCCBCCCSSCHHHHHHTTSSEECCCCCCSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECC
T ss_pred HHcCCCceEEECCEeccccCchhhhhhhhhHHhhCCCcccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcC
Confidence 999987642 2334455666665433221 346899999998776655443333 6999999999
Q ss_pred CChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhc-CCCCCcEEEEecc--------------------C
Q 013570 217 VGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-VPRGVRKVFFGWR--------------------R 275 (440)
Q Consensus 217 i~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~-~~~~~~vi~~g~~--------------------~ 275 (440)
|++||||+|||+|+|+++|.+|++.+++++.+|+|.|||.+..+. .....++++||.. .
T Consensus 225 I~~DHLd~~gs~e~y~~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~ 304 (524)
T 3hn7_A 225 LEFDHADIFADLDAIQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAEN 304 (524)
T ss_dssp CCCC------CHHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------C
T ss_pred CChHHccccCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCC
Confidence 999999999999999999999999998899999999999988765 2222578999975 2
Q ss_pred CcceEEEeceEEEcCCeEEEEEeecCe---EEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeE
Q 013570 276 GCDVRLVAAQVANGGLGVQVVLEKERE---MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352 (440)
Q Consensus 276 ~ad~~~~~~~i~~~~~~~~f~~~~~~~---~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~ 352 (440)
++++++.+ +. .++..|.+...+. ...++++++|.||++|+++|++++..+|++++.|+++|++|++++||||+
T Consensus 305 ~~d~~~~~--i~--~~g~~f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~ 380 (524)
T 3hn7_A 305 SSDWQAEL--IS--ADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVSVKTACAALSAFAGIKRRMEL 380 (524)
T ss_dssp CCSEEEEE--EE--TTTTEEEEEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEE
T ss_pred CCcEEEEE--EE--CCceEEEEEECCccceeEEEEeCCCcHHHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCCCCceEEE
Confidence 56787776 64 3466777765433 23789999999999999999999999999999999999999999999999
Q ss_pred EeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCC---CCCChhcHHHHHHHHHHHHHcCCCEEEEEcCc
Q 013570 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDM---LELGSTERESHEKILSYCCDACIDLIGLVGDR 428 (440)
Q Consensus 353 ~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m---~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~ 428 (440)
+...+++++|+| |||||++++++++++++..+.+|+++|||++ .+.|+..+..+. +.+ .+|.+|++|+.
T Consensus 381 ~~~~~g~~vi~D-~ahnp~~~~a~l~~l~~~~~~~r~i~V~g~~~~~~~~g~~~~~~~~-----~~~-~aD~vil~~~~ 452 (524)
T 3hn7_A 381 IGDVNDILVFDD-FAHHPTAITTTLDGAKKKLADRRLWAIIEPRSNTMKMGIHQDSLAQ-----SAT-LADHTLWYEPT 452 (524)
T ss_dssp EEEETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEEECCCCSSCCSCCTTHHHH-----HTT-TSSEEEEECCT
T ss_pred EEecCCcEEEEE-CCCCHHHHHHHHHHHHhhcCCCCEEEEECCCCcchhhhhhHHHHHH-----HHh-cCCEEEEcCCC
Confidence 986688999999 7999999999999999875457899999986 467766655443 233 48999999975
No 6
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=2.6e-50 Score=417.87 Aligned_cols=365 Identities=20% Similarity=0.227 Sum_probs=272.9
Q ss_pred cceeecCCCCCccC-HHHHHHHhCCeecccCCCceEEeeCCccccCCCCEEEEecCccC-CcccchHHHHhcCCCeEEEe
Q 013570 15 KTTFRCPSNSPIWT-INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHF-DAHEFISPELYGKGCVGVIG 92 (440)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~i~~i~~dsr~v~~~~g~lFval~G~~~-dg~~~i~~A~~~~Ga~~vv~ 92 (440)
++.+.+.--+--|+ +.+++...|..... +|.+.-.. .-++.-.|..+ +||.+. .+ +||.+||+
T Consensus 19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~--------~D~~~~~~---~~~l~~~gi~~~~g~~~~--~~--~~a~~vv~ 83 (475)
T 1p3d_A 19 QQIHFIGIGGAGMSGIAEILLNEGYQISG--------SDIADGVV---TQRLAQAGAKIYIGHAEE--HI--EGASVVVV 83 (475)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEE--------EESCCSHH---HHHHHHTTCEEEESCCGG--GG--TTCSEEEE
T ss_pred CEEEEEeecHHHHHHHHHHHHhCCCEEEE--------ECCCCCHH---HHHHHhCCCEEECCCCHH--Hc--CCCCEEEE
Confidence 34444454444455 77777766654432 23222100 00011122222 466652 34 58999999
Q ss_pred ccccCC--C--------CceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCe-
Q 013570 93 NQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV- 161 (440)
Q Consensus 93 ~~~~~~--~--------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~- 161 (440)
++..+. + ++|++.+. +. ++.+.+. .++|+||||||||||++||+++|++.|+++
T Consensus 84 s~~i~~~~~~~~~a~~~~i~vl~~~-----~~------l~~~~~~----~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~ 148 (475)
T 1p3d_A 84 SSAIKDDNPELVTSKQKRIPVIQRA-----QM------LAEIMRF----RHGIAVAGTHGKTTTTAMISMIYTQAKLDPT 148 (475)
T ss_dssp CTTSCTTCHHHHHHHHTTCCEEEHH-----HH------HHHHHHT----SEEEEEESSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEHH-----HH------HHHHhcC----CCEEEEECCCCHHHHHHHHHHHHHhCCCCCE
Confidence 986542 1 57888766 43 3333333 589999999999999999999999999874
Q ss_pred EEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccC-CCHHHHHHHHHHhcc
Q 013570 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQ 240 (440)
Q Consensus 162 ~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~-gs~e~~~~~K~~i~~ 240 (440)
....|+.+ .++.+.. ..+++++|+|+|+++.. ...++|+++|||||++||+|+| +|+|+|+++|.+++.
T Consensus 149 ~~igg~~~-~~~~~~~----~~~~d~~VlE~~~~~~~-----~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~ 218 (475)
T 1p3d_A 149 FVNGGLVK-SAGKNAH----LGASRYLIAEADESDAS-----FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLH 218 (475)
T ss_dssp EEEEEEET-TTTEEEE----CCSSSEEEEECCCTTSG-----GGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHT
T ss_pred EEECCccc-ccccccc----cCCCCEEEEEecCCcCc-----cccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHh
Confidence 33455655 3444321 24789999999876542 2347999999999999999999 899999999999999
Q ss_pred cCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeec-CeEEEEEeCcCcHHHHHHH
Q 013570 241 ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHLAINA 319 (440)
Q Consensus 241 ~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~-~~~~~~~l~l~G~~nv~Na 319 (440)
.+++++.+|+|.||+....+......++++||.+.++++++.+ +.....+..|.+... +....++++++|+||++|+
T Consensus 219 ~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~--~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~Na 296 (475)
T 1p3d_A 219 NLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIED--YEQTGFQGHYTVICPNNERINVLLNVPGKHNALNA 296 (475)
T ss_dssp TSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEE--EEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHH
T ss_pred hCCCCCEEEEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEE--EEEcCCceEEEEEECCCeEEEEEEcCccHHHHHHH
Confidence 9888999999999998877762212679999987777888887 777677778877543 2223789999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeec----CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcC
Q 013570 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR----SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395 (440)
Q Consensus 320 laAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~----~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~ 395 (440)
++|++++..+|++++.|+++|++|++++||||++... +++++|+| |||||+++++++++++...+.+|+++|||+
T Consensus 297 laAia~~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~ 375 (475)
T 1p3d_A 297 TAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQP 375 (475)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECC
Confidence 9999999999999999999999999999999999763 27899999 999999999999999976434688999987
Q ss_pred CCCCChhcHHHHHHHHHHHHHcCCCEEEEEc
Q 013570 396 MLELGSTERESHEKILSYCCDACIDLIGLVG 426 (440)
Q Consensus 396 m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G 426 (440)
+ .+++++..+.++++.+. .+|.+|++.
T Consensus 376 ~--~~~r~~~~~~~~~~~~~--~~d~vi~t~ 402 (475)
T 1p3d_A 376 H--RYSRTRDLFDDFVQVLS--QVDALIMLD 402 (475)
T ss_dssp B--CHHHHHHTHHHHHHHHT--TSSEEEEEC
T ss_pred C--CCccHHHHHHHHHHHHH--hCCEEEEcC
Confidence 3 24566677899999775 389999864
No 7
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=5.7e-50 Score=416.85 Aligned_cols=365 Identities=19% Similarity=0.223 Sum_probs=273.4
Q ss_pred cceeecCCCCCccC-HHHHHHHhCCeecccCCCceEEeeCCccccCCCCEEEEecCcc-CCcccchHHHHhcCCCeEEEe
Q 013570 15 KTTFRCPSNSPIWT-INEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQH-FDAHEFISPELYGKGCVGVIG 92 (440)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~i~~i~~dsr~v~~~~g~lFval~G~~-~dg~~~i~~A~~~~Ga~~vv~ 92 (440)
++.+.+.--+--|+ +.+++...|......+. .. +..++.+.. .|.. ++||++ +.+ +||.+||+
T Consensus 20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~-~~-~~~~~~l~~---------~gi~~~~g~~~--~~~--~~a~~vv~ 84 (491)
T 2f00_A 20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDL-AP-NPVTQQLMN---------LGATIYFNHRP--ENV--RDASVVVV 84 (491)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECS-SC-CHHHHHHHH---------TTCEEESSCCG--GGG--TTCSEEEE
T ss_pred CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECC-CC-CHHHHHHHH---------CCCEEECCCCH--HHc--CCCCEEEE
Confidence 34455455544465 77777776654433111 10 001112222 1222 246765 234 58999999
Q ss_pred ccccCC--C--------CceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCe-
Q 013570 93 NQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV- 161 (440)
Q Consensus 93 ~~~~~~--~--------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~- 161 (440)
++..+. + ++|++.+. +. ++..++. .++|+||||||||||++||+++|++.|+++
T Consensus 85 s~~i~~~~p~~~~a~~~~ipvl~~~-----~~------l~~~~~~----~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~ 149 (491)
T 2f00_A 85 SSAISADNPEIVAAHEARIPVIRRA-----EM------LAELMRF----RHGIAIAGTHGKTTTTAMVSSIYAEAGLDPT 149 (491)
T ss_dssp CTTCCTTCHHHHHHHHTTCCEEEHH-----HH------HHHHHTT----SEEEEEESSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEHH-----HH------HHHHHcC----CCEEEEECCCCHHHHHHHHHHHHHhCCCCCE
Confidence 986542 1 57888766 43 3433333 589999999999999999999999999874
Q ss_pred EEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccC-CCHHHHHHHHHHhcc
Q 013570 162 FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQ 240 (440)
Q Consensus 162 ~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~-gs~e~~~~~K~~i~~ 240 (440)
....|+.+ .++.+.. ..+++++|+|+|+++.. ...++|+++|||||++||+|+| +|+|+|+++|.+++.
T Consensus 150 ~~igg~~~-~~~~~~~----~~~~d~~VlE~~~~~~~-----~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~ 219 (491)
T 2f00_A 150 FVNGGLVK-AAGVHAR----LGHGRYLIAEADESDAS-----FLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLH 219 (491)
T ss_dssp EEEEEEET-TTTEEEE----CCSSSEEEEECCCTTSG-----GGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHT
T ss_pred EEECCeec-ccccccc----CCCCCEEEEEeCCCccc-----hhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHH
Confidence 33455555 3444322 24689999999876642 2247999999999999999999 899999999999999
Q ss_pred cCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeec-CeEEEEEeCcCcHHHHHHH
Q 013570 241 ESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHLAINA 319 (440)
Q Consensus 241 ~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~-~~~~~~~l~l~G~~nv~Na 319 (440)
.+++++.+|+|.||+....+......++++||.+.++++++.+ +.....+..|.+... +....++++++|.||++|+
T Consensus 220 ~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na 297 (491)
T 2f00_A 220 NLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVED--YQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNA 297 (491)
T ss_dssp TSCTTCEEEEETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEE--EEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHH
T ss_pred hCCCCCEEEEECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEE--EEEcCCceEEEEEECCceEEEEEEccchHHHHHHH
Confidence 9888999999999999887763323689999987777888887 777677777877542 2212789999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeec--------CC-eEEEEecCCCCHHHHHHHHHHHhcccCCCcEE
Q 013570 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR--------SG-IKIVNDAYNANPISTRAAIDLLKDIACNGKRV 390 (440)
Q Consensus 320 laAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~--------~~-~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i 390 (440)
++|++++..+|++++.|+++|++|++++||||++... ++ +++|+| |||||+++++++++++...+.+|++
T Consensus 298 laAia~a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~ 376 (491)
T 2f00_A 298 AAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKAARAGWPDKNLV 376 (491)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHHHHTTCCSSEEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEE
Confidence 9999999999999999999999999999999999762 27 899999 9999999999999999864346788
Q ss_pred EEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEc
Q 013570 391 VILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426 (440)
Q Consensus 391 ~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G 426 (440)
+|||++ .+.+++..+.++++.+. .+|.+|++.
T Consensus 377 ~v~g~~--~~~r~k~~~~~~~~~~~--~~d~vilt~ 408 (491)
T 2f00_A 377 MLFQPH--RFTRTRDLYDDFANVLT--QVDTLLMLE 408 (491)
T ss_dssp EEECCB--CHHHHTTTHHHHHHHHT--TSSEEEECC
T ss_pred EEECCC--CCcchHHHHHHHHHHHH--hCCEEEEcC
Confidence 999863 24555567889999775 389999863
No 8
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=2.4e-51 Score=421.61 Aligned_cols=343 Identities=22% Similarity=0.230 Sum_probs=261.0
Q ss_pred CceEEeeCCccccCCCCEEEEecCccCC-cccchHHHHhcCCCeEEEeccccCCCCceEEEE--cCCCCccHHHHHHHHH
Q 013570 46 PGIICTDTRILAPNKNQWFFAITGQHFD-AHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV--EGNGNVNTLNSLVNMA 122 (440)
Q Consensus 46 i~~i~~dsr~v~~~~g~lFval~G~~~d-g~~~i~~A~~~~Ga~~vv~~~~~~~~~~~~i~V--~~~~~~d~~~al~~la 122 (440)
.....+|+|...+ +..|++ +|.+++ ||.+ .++++ |+.+||+++..+. +.|.+.+ + +...++.++.
T Consensus 29 ~~v~~~D~~~~~~--~~~~l~-~G~~~~~g~~~-~~~~~--~~d~vV~s~gi~~-~~p~~~~a~~-----~~~~v~~~~~ 96 (439)
T 2x5o_A 29 VTPRVMDTRMTPP--GLDKLP-EAVERHTGSLN-DEWLM--AADLIVASPGIAL-AHPSLSAAAD-----AGIEIVGDIE 96 (439)
T ss_dssp CCCEEEESSSSCT--TGGGSC-TTSCEEESSCC-HHHHH--TCSEEEECTTSCT-TCHHHHHHHH-----TTCEEECHHH
T ss_pred CEEEEEECCCCcc--hhHHhh-CCCEEEECCCc-HHHhc--cCCEEEeCCCCCC-CCHHHHHHHH-----CCCcEEEHHH
Confidence 4456799999998 888888 899986 7754 66776 7999999886542 2233322 2 2222334444
Q ss_pred HHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHh
Q 013570 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202 (440)
Q Consensus 123 ~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~ 202 (440)
.+++. .+.++|+||||||||||++||+++|++.|+++. +.|| +|.|++.... ++.+++|+|+|+ +.++.
T Consensus 97 ~~~~~--~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~-~~gn----ig~~~~~~~~-~~~d~~VlE~~~---~~l~~ 165 (439)
T 2x5o_A 97 LFCRE--AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVG-VGGN----IGLPALMLLD-DECELYVLELSS---FQLET 165 (439)
T ss_dssp HHHHH--CCSCEEEEECSSSHHHHHHHHHHHHHHTTCCEE-EEES----SSBCHHHHCC-TTCCEEEEECCH---HHHHT
T ss_pred HHHHh--cCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEE-Eecc----cCHHHHHHhC-CCCCEEEEECCc---hhhcc
Confidence 44444 347899999999999999999999999999875 5565 6777654432 356999999986 23444
Q ss_pred hccccCCcEEEEcCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEE
Q 013570 203 LARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281 (440)
Q Consensus 203 ~~~~~~p~vaviTNi~~dHl~~~-gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~ 281 (440)
.+.++|+++|||||++||+|+| +|+|+|+++|++|++. .+.+|+|.|||....+... ..++++||.+.. ++.
T Consensus 166 -~~~~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V~n~dd~~~~~~~~~-~~~~~~~g~~~~-~~~- 238 (439)
T 2x5o_A 166 -TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRGA-DERCVSFGVNMG-DYH- 238 (439)
T ss_dssp -CCCCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEEETTCGGGSCSCCC-SSCCEEECSSSS-SEE-
T ss_pred -cccCCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEEEeCCCHHHHHHhhc-CCcEEEEeCCCc-CcC-
Confidence 4568999999999999999999 8899999999999964 6899999999987766532 367899997532 221
Q ss_pred EeceEEEcCCeEEEEEeecCeEE-EEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeE
Q 013570 282 VAAQVANGGLGVQVVLEKEREMV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK 360 (440)
Q Consensus 282 ~~~~i~~~~~~~~f~~~~~~~~~-~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ 360 (440)
+ +... ++ .+.+....... .++++++|.||++|+++|++++..+|++++.|+++|++|+++|||||++...++++
T Consensus 239 -~--~~~~-~~-~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~f~~~~gR~e~~~~~~~~~ 313 (439)
T 2x5o_A 239 -L--NHQQ-GE-TWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVR 313 (439)
T ss_dssp -E--EEET-TE-EEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEETTEE
T ss_pred -c--EEEE-CC-EEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEECCEE
Confidence 2 2222 22 23332111111 24689999999999999999999999999999999999999999999998767889
Q ss_pred EEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhh
Q 013570 361 IVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQ 432 (440)
Q Consensus 361 ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~ 432 (440)
+|+|+|||||+|++++++.++. .+|+++|||+|.++++.+ ++++.+.. .+|.++++|+..+..
T Consensus 314 vi~Ds~a~np~a~~~al~~l~~---~~~~i~v~g~~~k~~~~~-----~~~~~l~~-~~d~vi~~g~~~~~~ 376 (439)
T 2x5o_A 314 WINDSKATNVGSTEAALNGLHV---DGTLHLLLGGDGKSADFS-----PLARYLNG-DNVRLYCFGRDGAQL 376 (439)
T ss_dssp EEECTTCCSHHHHHHHHTTCCC---SSCEEEEEESBCTTCCCG-----GGGGGSCS-SSEEEEEESTTHHHH
T ss_pred EEEeCCCCCHHHHHHHHHhCCc---CCCEEEEEcCCCCCCCHH-----HHHHHHHh-hCCEEEEECCCHHHH
Confidence 9999999999999999998864 368999999987776543 46666654 489999999876543
No 9
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=1.9e-48 Score=405.16 Aligned_cols=310 Identities=19% Similarity=0.270 Sum_probs=243.1
Q ss_pred CCCeEEEeccccCC----------CCceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHH
Q 013570 85 KGCVGVIGNQVCNN----------WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 85 ~Ga~~vv~~~~~~~----------~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL 154 (440)
.++..||+++..+. .++|++- + .+ .++.+.+. .++||||||||||||++||+++|
T Consensus 80 ~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~-------~-~e---~l~~~~~~----~~~IaVTGTnGKTTTt~ml~~iL 144 (494)
T 4hv4_A 80 LDASVVVVSTAISADNPEIVAAREARIPVIR-------R-AE---MLAELMRY----RHGIAVAGTHGKTTTTAMLSSIY 144 (494)
T ss_dssp TTCSEEEECTTSCTTCHHHHHHHHTTCCEEE-------H-HH---HHHHHHTT----SEEEEEECSSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEEc-------H-HH---HHHHHhcC----CCEEEEecCCChHHHHHHHHHHH
Confidence 36888888876553 1566662 2 12 23333333 47999999999999999999999
Q ss_pred HhCCCCe-EEecCcCCCCcchhhHHhcccCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccC-CCHHHHH
Q 013570 155 ESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GSLEDVA 232 (440)
Q Consensus 155 ~~~g~~~-~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~-gs~e~~~ 232 (440)
++.|+++ ....|+.| .+|.+.. + .+.+++|+|+|+++.. ...++|+++|||||++||+|+| +|+|+|+
T Consensus 145 ~~~g~~~~~~~gg~~~-~~g~~~~---~-~~~d~~VlE~~e~~~s-----~~~~~P~iaVITNI~~DHld~~G~t~e~~a 214 (494)
T 4hv4_A 145 AEAGLDPTFVNGGLVK-AAGTHAR---L-GSSRYLIAEADESDAS-----FLHLQPMVAIVTNIEADHMDTYQGDFENLK 214 (494)
T ss_dssp HHTTCCCEEEEEEEET-TTTEEEE---C-CSSSEEEEECCCGGGG-----GGGCCCSEEEECCCCCSSCCSSTTHHHHHH
T ss_pred HhcCCCCEEEECCccc-ccccccc---c-CCCcEEEEEccccccc-----cccccCCEEEEcCCCHHHhhhhccCHHHHH
Confidence 9999864 33333333 3554321 2 4689999999976531 2357999999999999999999 8899999
Q ss_pred HHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecC-eEEEEEeCcC
Q 013570 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER-EMVKFVIPSP 311 (440)
Q Consensus 233 ~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~-~~~~~~l~l~ 311 (440)
++|.+|++.+++++.+|+|.||+....+......++++||.+.++++++.+ +.....+..|.+...+ ....+.++++
T Consensus 215 ~aK~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~--~~~~~~~~~f~~~~~~~~~~~~~l~l~ 292 (494)
T 4hv4_A 215 QTFINFLHNLPFYGRAVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIAS--YRQEGPQGHFTLRRQDKPLIEVTLNAP 292 (494)
T ss_dssp HHHHHHHTTSCTTCEEEEETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEE--EEEETTEEEEEEECTTSCCEEEEESSC
T ss_pred HHHHHHHhcCCCCCEEEEECCCHHHHHHHHhcCCCEEEEecCCCCceEEEE--EEEeCCEEEEEEEECCceEEEEEecCC
Confidence 999999999888999999999999888773333689999998788999888 8877788888886542 1237899999
Q ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeec---------CCeEEEEecCCCCHHHHHHHHHHHhc
Q 013570 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR---------SGIKIVNDAYNANPISTRAAIDLLKD 382 (440)
Q Consensus 312 G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~---------~~~~ii~Dsyahnp~s~~~al~~l~~ 382 (440)
|+||++|+++|++++..+|++++.|+++|++|++++||||++... +++++|+| |||||+++++++++++.
T Consensus 293 G~hnv~NalaAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~D-yaHnp~~i~a~l~al~~ 371 (494)
T 4hv4_A 293 GRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARA 371 (494)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEE-CCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccEEeeeccccccccCCCCeEEEEe-CCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999864 47999999 99999999999999987
Q ss_pred ccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEc
Q 013570 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426 (440)
Q Consensus 383 ~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G 426 (440)
..+.+|+++|||.+. ..+......++++.+. .+|.+|++.
T Consensus 372 ~~~~~rii~V~g~~~--~~r~k~~~~~~~~~~~--~aD~vilt~ 411 (494)
T 4hv4_A 372 GWPDKRIVMLFQPHR--YTRTRDLYDDFANVLS--QVDVLLMLD 411 (494)
T ss_dssp HCTTSEEEEEECCBC--HHHHHHTHHHHHHHHT--TSSEEEEEC
T ss_pred hcCCCeEEEEEcCCC--CCchHHHHHHHHHHHh--cCCEEEEeC
Confidence 653457889998621 1223344455666553 489999974
No 10
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=8e-49 Score=401.68 Aligned_cols=287 Identities=23% Similarity=0.283 Sum_probs=229.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEE--e--cCcCCCC-----------------
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ--S--YGNWNNR----------------- 171 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~--t--~g~~n~~----------------- 171 (440)
+++++|+.++. |..+.++|+||||||||||++||+++|++.|++++. + ..++|++
T Consensus 24 ~~~~~l~~lg~----p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~ 99 (428)
T 1jbw_A 24 RILTLLHALGN----PQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAV 99 (428)
T ss_dssp HHHHHHHHTTC----GGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHcCC----chhcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHH
Confidence 89999988765 344589999999999999999999999999999863 2 1334322
Q ss_pred ---------cc-----hhhHHhcc----------cCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCC-
Q 013570 172 ---------VG-----VALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG- 226 (440)
Q Consensus 172 ---------~g-----~p~~l~~~----------~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~g- 226 (440)
+| .|++++++ +.+++++|+|+|+++..+ .+++++|+++|||||++||+++||
T Consensus 100 ~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d---~t~~~~p~vaviTnI~~DHld~~g~ 176 (428)
T 1jbw_A 100 AFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTD---STNVITPVVSVLTEVALDHQKLLGH 176 (428)
T ss_dssp HHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTS---TTCSCCCSEEEECCCCSCCHHHHCS
T ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccc---ccccCCCCEEEECcCcHhhhhhhCC
Confidence 23 45565544 678999999999865533 467789999999999999999999
Q ss_pred CHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcC----CCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCe
Q 013570 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302 (440)
Q Consensus 227 s~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~----~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~ 302 (440)
|+|+|+++|++|++ +++.+|+|.||+....+.. ..+.++++||. ++++.. ......+..|.+...+.
T Consensus 177 t~e~ia~~K~~i~~---~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~--~~~~~~~~~~~~~~~~~ 247 (428)
T 1jbw_A 177 TITAIAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR----DFSVPK--AKLHGWGQRFTYEDQDG 247 (428)
T ss_dssp SHHHHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT----TEEEEE--EEECSSSEEEEEEETTE
T ss_pred CHHHHHHHHhcccc---CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCc----cceeec--cccccCCceEEEecCCc
Confidence 89999999999995 5789999999997665431 11257888885 455544 44445566777765422
Q ss_pred EE-EEEeCcCcHHHHHHHHHHHHHHHHc-C-----CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHH
Q 013570 303 MV-KFVIPSPGLHLAINACAAAAVATLF-G-----VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375 (440)
Q Consensus 303 ~~-~~~l~l~G~~nv~NalaAia~~~~l-g-----~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~ 375 (440)
.. .+.+|++|.||++|+++|++++..+ | ++++.|+++|++|+ +|||||++.. ++ .+|+| |||||+|+++
T Consensus 248 ~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~~-~~-~viiD-~AhNp~s~~a 323 (428)
T 1jbw_A 248 RISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKISD-TP-LIVID-GAHNPDGING 323 (428)
T ss_dssp EEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEET-TT-TEEEE-CCCSHHHHHH
T ss_pred cccccccCCCChhHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEecC-CC-cEEEE-CCcCHHHHHH
Confidence 23 6889999999999999999999999 9 99999999999999 8999999975 44 46677 7999999999
Q ss_pred HHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcC
Q 013570 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427 (440)
Q Consensus 376 al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~ 427 (440)
+++++++..+ +|+++|||+| +++ .|.++++.+.+. +|.+|++++
T Consensus 324 ~l~~l~~~~~-~~~i~V~g~~---~~k---d~~~~~~~~~~~-~d~vi~~~~ 367 (428)
T 1jbw_A 324 LITALKQLFS-QPITVIAGIL---ADK---DYAAMADRLTAA-FSTVYLVPV 367 (428)
T ss_dssp HHHHHHHHCS-SCCEEEEECS---SST---THHHHHHHHHHH-CSEEEECCC
T ss_pred HHHHHHHhcC-CCEEEEEeeC---CCC---CHHHHHHHHhhh-CCEEEEECC
Confidence 9999988763 7899999995 333 456888888887 899999454
No 11
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=4.1e-47 Score=394.11 Aligned_cols=295 Identities=20% Similarity=0.202 Sum_probs=233.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeE--EecC--cCCCCc----------------
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYG--NWNNRV---------------- 172 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~--~t~g--~~n~~~---------------- 172 (440)
.....+..++.++.+|+.+.++|+||||||||||++||+++|++.|++++ +++. ++|+++
T Consensus 45 ~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~ 124 (487)
T 2vos_A 45 PSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATY 124 (487)
T ss_dssp TTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHH
Confidence 44566677777788888889999999999999999999999999999984 2222 233332
Q ss_pred ---------------------chhhHHhcc----------cCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhh
Q 013570 173 ---------------------GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (440)
Q Consensus 173 ---------------------g~p~~l~~~----------~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dH 221 (440)
|.|++++++ +.+++++|+|+|+++.. +.+++++|+++|||||+.||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~---d~tn~i~p~vaVITnI~~DH 201 (487)
T 2vos_A 125 REIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRW---DATNVINAPVAVITPISIDH 201 (487)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTT---STTCSSCCSEEEECCCCCCB
T ss_pred HHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCcc---ccccccCCCEEEECCcchhh
Confidence 334455443 67899999999986653 34578899999999999999
Q ss_pred hccCC-CHHHHHHHHHHhcccC---CCCcEEEEeCCcHHHHhhc----CCCCCcEEEEeccCCcceEEEeceEEEcCCeE
Q 013570 222 LESLG-SLEDVARAKGEIFQES---KLGDVCVLNADDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV 293 (440)
Q Consensus 222 l~~~g-s~e~~~~~K~~i~~~~---~~~~~~Vln~dd~~~~~~~----~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~ 293 (440)
+++|| |+|+|+++|++||+.+ ++++.+|+|.||+....+. ...+.++++||. ++.+.. +.....+.
T Consensus 202 ld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~----d~~~~~--~~~~~~g~ 275 (487)
T 2vos_A 202 VDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDS----EFAVLR--RQIAVGGQ 275 (487)
T ss_dssp CSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTT----TBEEEE--EEEETTEE
T ss_pred hhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecC----ceEEEe--eccccCCc
Confidence 99999 7999999999999875 6789999999999765542 112357788874 455555 55555677
Q ss_pred EEEEeecC-eEEEEEeCcCcHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEec
Q 013570 294 QVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLF-------GVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365 (440)
Q Consensus 294 ~f~~~~~~-~~~~~~l~l~G~~nv~NalaAia~~~~l-------g~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Ds 365 (440)
.|.+...+ ....+.++++|.||++|+++|++++..+ |++++.|+++|++|+ .|||||++.. +..+|+|
T Consensus 276 ~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~~--~~~vi~D- 351 (487)
T 2vos_A 276 VLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMRS--APTVFID- 351 (487)
T ss_dssp EEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEET--TTEEEEC-
T ss_pred eEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEcC--CCeEEEE-
Confidence 77776542 2226889999999999999999999998 899999999999999 5999999975 4578999
Q ss_pred CCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcC
Q 013570 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427 (440)
Q Consensus 366 yahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~ 427 (440)
|||||+|++++++++++..+.+|+++|||+|.+ ++ .+.+.+.+.+. +|.|++++.
T Consensus 352 ~AHNp~a~~a~l~~l~~~~~~~~~i~V~G~~~d---kd---~~~~~~~l~~~-~d~vilt~~ 406 (487)
T 2vos_A 352 AAHNPAGASALAQTLAHEFDFRFLVGVLSVLGD---KD---VDGILAALEPV-FDSVVVTHN 406 (487)
T ss_dssp CCCSHHHHHHHHHHHHHSCCCSEEEEEECCBTT---BC---HHHHHHHHTTT-CSEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC---CC---HHHHHHHHHhh-CCEEEEeCC
Confidence 999999999999999875435789999999544 42 35677777665 799999985
No 12
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=1.1e-47 Score=394.29 Aligned_cols=290 Identities=19% Similarity=0.195 Sum_probs=223.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeE--Eec--CcCCCCc---c------------
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV---G------------ 173 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~--~t~--g~~n~~~---g------------ 173 (440)
+++++|..|+.+ ..+.++|+||||||||||++||+++|++.|++++ +|+ +++|+++ |
T Consensus 37 ~~~~~l~~lg~p----~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~ 112 (442)
T 1o5z_A 37 RISMLLSKLGNP----HLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIY 112 (442)
T ss_dssp HHHHHHHHTTCG----GGSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHcCCc----hhcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHH
Confidence 888888877754 4457999999999999999999999999999986 332 5666655 2
Q ss_pred ---------------hhhHHhcc----------cCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCC-C
Q 013570 174 ---------------VALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-S 227 (440)
Q Consensus 174 ---------------~p~~l~~~----------~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~g-s 227 (440)
.|+|++++ +.+++++|+|+|+++..+ .+++++|+++|||||++||+++|| |
T Consensus 113 ~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d---~t~~~~P~vaViTnI~~DHld~~G~t 189 (442)
T 1o5z_A 113 ETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLD---ATNVVFPLCSTIVTVDRDHEKTLGYT 189 (442)
T ss_dssp HHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTC---GGGGCCCSCEEECCCCC-------CC
T ss_pred HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcc---ccccCCCCEEEECCccHhhhhhhCcC
Confidence 23344433 678999999999876543 356789999999999999999999 8
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcC----CCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCeE
Q 013570 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREM 303 (440)
Q Consensus 228 ~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~----~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~~ 303 (440)
+|+|+++|++|++ +++.+|+|.||+....+.. ..+.++++||. ++.+.. ......+..|.+...+..
T Consensus 190 ~e~ia~~K~~i~~---~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~----d~~~~~--~~~~~~~~~~~~~~~~~~ 260 (442)
T 1o5z_A 190 IEQIAWEKSGIIK---ERVPLVTGERKREALKVMEDVARKKSSRMYVIDK----DFSVKV--KSLKLHENRFDYCGENTF 260 (442)
T ss_dssp HHHHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT----TBEEEE--EECCTTCEEEEEESSSEE
T ss_pred HHHHHHHHHhhcc---CCccEEEcCCChHHHHHHHHHHHHcCCcEEEeCc----ceeeec--cccccCCceEEEeccccc
Confidence 9999999999996 5788999999987665541 11257888875 455544 444445666766543222
Q ss_pred EEEEeCcCcHHHHHHHHHHHHHHH--HcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHh
Q 013570 304 VKFVIPSPGLHLAINACAAAAVAT--LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381 (440)
Q Consensus 304 ~~~~l~l~G~~nv~NalaAia~~~--~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~ 381 (440)
..+.+|++|.||++|+++|++++. .+|++++.|+++|++|+ +|||||++.. ++..+|+| |||||+|+++++++++
T Consensus 261 ~~~~l~l~G~hn~~NalaAia~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~~-~~~~viiD-~AhNp~s~~~~l~~l~ 337 (442)
T 1o5z_A 261 EDLVLTMNGPHQIENAGVALKTLEATGLPLSEKAIREGLKNAK-NLGRFEILEK-NGKMYILD-GAHNPHGAESLVRSLK 337 (442)
T ss_dssp EEEEESSCSTHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEEE-TTEEEEEC-CCCSHHHHHHHHHHHH
T ss_pred cccccCCCcHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEEc-CCCeEEEE-CCcCHHHHHHHHHHHH
Confidence 268899999999999999999999 99999999999999999 7999999986 44678889 9999999999999998
Q ss_pred cccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCc
Q 013570 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428 (440)
Q Consensus 382 ~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~ 428 (440)
+..+.+|+++|||+| +++ .++++++.+.+. +|.++++|..
T Consensus 338 ~~~~~~~~i~V~g~~---~dk---d~~~~~~~l~~~-~d~vi~~~~~ 377 (442)
T 1o5z_A 338 LYFNGEPLSLVIGIL---DDK---NREDILRKYTGI-FERVIVTRVP 377 (442)
T ss_dssp HHCTTCCEEEEECCC---TTS---CHHHHHGGGTTT-CSEEEECCCS
T ss_pred HhCCCCCEEEEEecC---CCC---CHHHHHHHHHhh-CCEEEEECCC
Confidence 764357899999985 333 356788888775 8999999854
No 13
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=5.4e-47 Score=390.45 Aligned_cols=272 Identities=29% Similarity=0.330 Sum_probs=216.0
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcc-cCCCcEEEEeeccCCcchHHhhccccCCc
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILELARMARPE 210 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~-~~~~~~~VlE~g~~~~g~~~~~~~~~~p~ 210 (440)
.++||||||||||||++||+++|++.|.++ ...|| +|.|++.... ..+.+++|+|+|+++ ++ ..+.++|+
T Consensus 112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~-~~~Gn----ig~~~~~~~~~~~~~d~~VlE~~s~~---l~-~~~~~~p~ 182 (451)
T 3lk7_A 112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRG-LLAGN----IGFPASEVVQAANDKDTLVMELSSFQ---LM-GVKEFRPH 182 (451)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCE-EEEET----SSSCHHHHTTTCCTTCEEEEECCHHH---HT-TCSSCCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCE-EEeee----cChhhhhhhhcCCCCCEEEEECCccc---cc-cccccCCC
Confidence 489999999999999999999999999877 35666 6777665543 357899999998532 22 34568999
Q ss_pred EEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCc-ceEEEeceEEEc
Q 013570 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC-DVRLVAAQVANG 289 (440)
Q Consensus 211 vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~a-d~~~~~~~i~~~ 289 (440)
++|||||++||+|+|||+|+|+++|++|++.+++++.+|+|.|||....+......++++||.+.+. +++..+
T Consensus 183 iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------ 256 (451)
T 3lk7_A 183 IAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQD------ 256 (451)
T ss_dssp EEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEETTSHHHHHHHTTCSSEEEEEESSSCCSSEEEET------
T ss_pred EEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEEECCcHHHHHHHhhcCCeEEEEccCCCcCCEEEEC------
Confidence 9999999999999999999999999999999888999999999999888763334689999986532 233222
Q ss_pred CCeEEEEEeecCeEEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCC
Q 013570 290 GLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (440)
Q Consensus 290 ~~~~~f~~~~~~~~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahn 369 (440)
. .+.+.+......++++++|.||++|+++|++++..+|++++.|+++|++|++++||||++...+++++|+|+||||
T Consensus 257 -~--~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~g~~vi~D~~a~n 333 (451)
T 3lk7_A 257 -K--QLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTN 333 (451)
T ss_dssp -T--EEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHCCCCTTSSEEEEEETTEEEEECTTCCS
T ss_pred -C--EEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcEEEEeeeCCcEEEEeCCCCC
Confidence 1 2222211000135689999999999999999999999999999999999999999999998768899999999999
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchhhh
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVVVQ 432 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~~~ 432 (440)
|+|+.++|+.+. .+|+++|+|.+. .+. .++++++.+. ++|.++++|+.....
T Consensus 334 p~a~~~al~~~~----~~rii~I~g~~~-r~~----d~~~l~~~l~--~~d~vi~~G~~~~~l 385 (451)
T 3lk7_A 334 ILATQKALSGFD----NTKVILIAGGLD-RGN----EFDELIPDIT--GLKHMVVLGESASRV 385 (451)
T ss_dssp HHHHHHHHHTSC----GGGEEEEECCSC-CSC----CCGGGHHHHT--TCSEEEECSTTHHHH
T ss_pred HHHHHHHHHhCC----CCCEEEEECCCC-CCC----CHHHHHHHHH--hcCEEEEECCCHHHH
Confidence 999999987653 246888888643 222 2356777775 389999999876543
No 14
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=1.8e-46 Score=384.72 Aligned_cols=294 Identities=18% Similarity=0.196 Sum_probs=221.0
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeE--Eec--CcCCCCc------------------
Q 013570 115 LNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV------------------ 172 (440)
Q Consensus 115 ~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~--~t~--g~~n~~~------------------ 172 (440)
...+..+.+.+.+|+.+.++|+||||||||||+.||+++|++.|++|+ +|+ .++|+++
T Consensus 35 L~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~ 114 (437)
T 3nrs_A 35 LERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQ 114 (437)
T ss_dssp CHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHHH
Confidence 456667777777888999999999999999999999999999999994 343 5778776
Q ss_pred ------chhhHHhcc----------cCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCC-CHHHHHHHH
Q 013570 173 ------GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAK 235 (440)
Q Consensus 173 ------g~p~~l~~~----------~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~g-s~e~~~~~K 235 (440)
+.|+|.+++ ++++|++|+|+|+++..+ .+++++|+++|||||+.||+++|| |+|+|+++|
T Consensus 115 v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld---~tnii~p~vaVITnI~~DHld~lG~t~e~ia~~K 191 (437)
T 3nrs_A 115 IEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLD---ATNIVDSDVAAITSIALDHTDWLGYDRESIGREK 191 (437)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTS---GGGGSCCSEEEECCCCCCBCCCTTCSHHHHHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccc---cccccCCCEEEEcCccHHHHHHhCCcHHHHHHHH
Confidence 345555544 789999999999876532 467789999999999999999999 799999999
Q ss_pred HHhcccCCCCcEEEEeCCcHH--HHhhcCCCCCcEEEEeccCCcceEEEe---ceEEEcCCeEEEEEeecCeEEEEEeCc
Q 013570 236 GEIFQESKLGDVCVLNADDPL--VANLTVPRGVRKVFFGWRRGCDVRLVA---AQVANGGLGVQVVLEKEREMVKFVIPS 310 (440)
Q Consensus 236 ~~i~~~~~~~~~~Vln~dd~~--~~~~~~~~~~~vi~~g~~~~ad~~~~~---~~i~~~~~~~~f~~~~~~~~~~~~l~l 310 (440)
++||+ +++.+|+|.||+. +...+...+.++++||.+ .++...+ ..+.....+..|.+...... .+.+++
T Consensus 192 a~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l 265 (437)
T 3nrs_A 192 AGVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVA--WKFSQQEPFDQQEPVDQQINGWHWQCGERQ-LTGLPV 265 (437)
T ss_dssp GGGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTT--EEEEC--------------CCEEEEETTEE-EEEECC
T ss_pred Hhhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEeccc--ceeeecccccccccccccCceEEEecCCcc-eeccCC
Confidence 99995 5789999988763 223332223678888764 2332210 00111122334555543211 455666
Q ss_pred C--cHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHh------c
Q 013570 311 P--GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK------D 382 (440)
Q Consensus 311 ~--G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~------~ 382 (440)
+ |.||+.|+++|+++ ..+|++.+.|.++|++|+ .|||||++.. +..+|+| |||||+|+++++++++ +
T Consensus 266 ~~~~~~Na~~Alaa~~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~~--~~~vi~D-~AHNp~a~~all~~l~~~~~~~~ 340 (437)
T 3nrs_A 266 PNVPLANAATALAVLHY-SELPLSDEAIRQGLQAAS-LPGRFQVVSE--QPLLILD-VAHNPHAARYLVNRLAQVINPVN 340 (437)
T ss_dssp CSSCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHCC-CTTSSEEEET--TTEEEEC-CCCSHHHHHHHHHHHHHTC----
T ss_pred cchhHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhCC-CCCceEEEec--CCeEEEE-CCCCHHHHHHHHHHHHhhcchhh
Confidence 6 89999999999888 678999999999999999 6999999974 3478999 9999999999999998 7
Q ss_pred ccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 383 ~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
+++.+|+++|||+ ++++ .++++++.+... +|.++++|...
T Consensus 341 ~~~~~r~i~V~G~---~~dk---d~~~~~~~l~~~-~~~v~~~~~~~ 380 (437)
T 3nrs_A 341 ASKQGKVRAVVGM---LSDK---DIAGTLACLSER-VDEWYCAPLEG 380 (437)
T ss_dssp ----CCEEEEECC---BTTB---CHHHHHHHHTTT-CCEEEECCCSS
T ss_pred hcCCCCEEEEEeC---CCCC---CHHHHHHHHHhc-CCEEEEeCCCC
Confidence 6445789999998 4444 367888888775 89999999654
No 15
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=8.8e-45 Score=375.46 Aligned_cols=267 Identities=24% Similarity=0.270 Sum_probs=208.7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeE-EecCcCCCCcc-hhhHHhcccCCCcEEEEeeccCCcchHHhhccccCC
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVF-QSYGNWNNRVG-VALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~-~t~g~~n~~~g-~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~~p 209 (440)
.++|+||||||||||++||+++|++.|+++. .+.|+.++ ++ .+.. + .+.+ +|+|++++.. ....++|
T Consensus 114 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~-~g~~~~~---~-~~~~-~V~E~~~~~~-----~~~~~~p 182 (469)
T 1j6u_A 114 KEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDS-LEHGNYE---K-GNGP-VVYELDESEE-----FFSEFSP 182 (469)
T ss_dssp CCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTT-STTSSEE---C-CSSC-EEEEECTTSG-----GGGGCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecc-cCccccc---c-CCCC-EEEECCCccC-----ccccccC
Confidence 6899999999999999999999999999874 45556544 44 3322 2 3467 9999986532 2345799
Q ss_pred cEEEEcCCChhhhccCCC-HHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCCCCCcEEEEeccCCcceEEEeceEEE
Q 013570 210 EIRVVLNVGDSHLESLGS-LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288 (440)
Q Consensus 210 ~vaviTNi~~dHl~~~gs-~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~ 288 (440)
+++|||||++||+|+||+ +|+|+++|.+++..++ .+|+|.||+....+ ++++||.+. +++++ + +..
T Consensus 183 ~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~---~~V~n~dd~~~~~~------~~~~~g~~~-~d~~~-~--~~~ 249 (469)
T 1j6u_A 183 NYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD---LVVTFAEDELTSHL------GDVTFGVKK-GTYTL-E--MRS 249 (469)
T ss_dssp SEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS---EEEEETTCTTTGGG------CSEEECSSS-SSEEE-E--EEE
T ss_pred CEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC---EEEEECCChhhccc------eEEEEECCC-ceEEE-E--EEE
Confidence 999999999999999999 9999999999997653 89999999875432 578999765 67777 6 666
Q ss_pred cCCe-EEEEEeecCe-EEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEE--eecCCeEEEEe
Q 013570 289 GGLG-VQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL--VSRSGIKIVND 364 (440)
Q Consensus 289 ~~~~-~~f~~~~~~~-~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~gR~e~~--~~~~~~~ii~D 364 (440)
...+ ..|.+...+. ...++++++|.||++|+++|++++..+|++++.|+++|++|+++|||||++ ...+++++|+|
T Consensus 250 ~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~~~~g~~vi~D 329 (469)
T 1j6u_A 250 ASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDD 329 (469)
T ss_dssp ECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCcEEEcccccCCcEEEEe
Confidence 5556 6777754432 226889999999999999999999999999999999999999999999999 44468999999
Q ss_pred cCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcC
Q 013570 365 AYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427 (440)
Q Consensus 365 syahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~ 427 (440)
|||||++++++++++++..+.+|+++|||.- ...+....+.++++.+. .+|.+++++.
T Consensus 330 -~aHnp~~~~a~l~al~~~~~~~~i~~I~g~g--~~~r~~~~~~~l~~~~~--~~d~vil~~~ 387 (469)
T 1j6u_A 330 -YAHTPDEIRNLLQTAKEVFENEKIVVIFQPH--RYSRLEREDGNFAKALQ--LADEVVVTEV 387 (469)
T ss_dssp -CCCSHHHHHHHHHHHHHHCSSSEEEEEECCB--C--------CHHHHHHT--TSSEEEECCC
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCcEEEEEcCC--CCCccHHHHHHHHHHHh--cCCEEEEccc
Confidence 9999999999999998633246788888740 12344455677777664 3899999854
No 16
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=5.9e-46 Score=379.76 Aligned_cols=283 Identities=18% Similarity=0.215 Sum_probs=216.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeE--Eec--CcCCCCc----------------
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV---------------- 172 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~--~t~--g~~n~~~---------------- 172 (440)
+++++|..| .+|..+.++|+||||||||||++||+++|++.|++++ .+. +++|+++
T Consensus 34 r~~~~l~~l----g~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~ 109 (422)
T 1w78_A 34 RVSLVAARL----GVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASF 109 (422)
T ss_dssp HHHHHHHHH----TCSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHc----CCcccCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHH
Confidence 455555544 4577889999999999999999999999999999984 333 4566543
Q ss_pred --------chhhHHhcc----------cCCCcEEEEeeccCCcchHHhhccccCCcEEEEcCCChhhhccCC-CHHHHHH
Q 013570 173 --------GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVAR 233 (440)
Q Consensus 173 --------g~p~~l~~~----------~~~~~~~VlE~g~~~~g~~~~~~~~~~p~vaviTNi~~dHl~~~g-s~e~~~~ 233 (440)
+.|++++++ +.+++++|+|+|+++.++ .+++++|+++|||||++||+++|| |+|+|++
T Consensus 110 ~~v~~~~~~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~~~d---~t~~~~p~vaviTnI~~DHld~~g~t~e~ia~ 186 (422)
T 1w78_A 110 AEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLD---ATNIVDADVAVVTSIALDHTDWLGPDRESIGR 186 (422)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTS---GGGGSCCSEEEECCCCSCCHHHHCSSHHHHHH
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHcCCCEEEEecCCCcccc---cccCCCCCEEEECCcChhhhhhhCCCHHHHHH
Confidence 344454443 668999999999876543 456789999999999999999999 8999999
Q ss_pred HHHHhcccCCCCcEEEEeCCcHHH--HhhcCCCCCcEEEEeccCCcceEEEeceEEEcCCeEEEEEeecCeEEEEEeCcC
Q 013570 234 AKGEIFQESKLGDVCVLNADDPLV--ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311 (440)
Q Consensus 234 ~K~~i~~~~~~~~~~Vln~dd~~~--~~~~~~~~~~vi~~g~~~~ad~~~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~ 311 (440)
+|++|++ +++.+|+|.|++.. .......+.++++||. ++.+. .. +..|.+...+.. .+.++++
T Consensus 187 ~K~~i~~---~~~~~v~~~d~~~~~~~~~a~~~~~~~~~~g~----~~~~~-----~~--~~~~~~~~~~~~-~~~l~l~ 251 (422)
T 1w78_A 187 EKAGIFR---SEKPAIVGEPEMPSTIADVAQEKGALLQRRGV----EWNYS-----VT--DHDWAFSDAHGT-LENLPLP 251 (422)
T ss_dssp HHGGGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTT----TBEEE-----EC--SSCEEEEETTEE-EEEECCC
T ss_pred HHHhhcc---CCCcEEEcCccHHHHHHHHHHHcCCceEEeCc----ceeee-----cc--CceEEEecCCcc-cccCCch
Confidence 9999995 57889999877642 1222111257888875 23321 11 122444333221 2678888
Q ss_pred cHHHHHHHHHHHHHHHHc--CCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcE
Q 013570 312 GLHLAINACAAAAVATLF--GVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR 389 (440)
Q Consensus 312 G~~nv~NalaAia~~~~l--g~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~ 389 (440)
.||++|+++|++++..+ |++++.|.++|++|+ +|||||++.. ++ .+|+| |||||+|++++++++++..+.+|+
T Consensus 252 -~hn~~Na~aAia~~~~~~~gi~~~~i~~~L~~~~-~~gR~e~~~~-~~-~~i~D-~Ahnp~s~~~~l~~l~~~~~~~~~ 326 (422)
T 1w78_A 252 -LVPQPNAATALAALRASGLEVSENAIRDGIASAI-LPGRFQIVSE-SP-RVIFD-VAHNPHAAEYLTGRMKALPKNGRV 326 (422)
T ss_dssp -SSCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHCC-CTTSSEEEET-TT-EEEEE-CCCSHHHHHHHHHHHHHSCSCSCE
T ss_pred -HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC-CCceEEEEeC-CC-eEEEE-CCCCHHHHHHHHHHHHHhCCCCCE
Confidence 99999999999999886 899999999999999 5999999975 34 68889 899999999999999987535789
Q ss_pred EEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 390 VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 390 i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
++|||+|. ++ .++++++.+.+. +|.++++|...
T Consensus 327 i~V~g~~~---~k---d~~~~~~~l~~~-~d~vi~~~~~~ 359 (422)
T 1w78_A 327 LAVIGMLH---DK---DIAGTLAWLKSV-VDDWYCAPLEG 359 (422)
T ss_dssp EEEECCBT---TS---CHHHHHHHHHTT-CSEEEECCCCS
T ss_pred EEEEeccC---CC---CHHHHHHHHHhh-CCEEEEECCCC
Confidence 99999854 33 356888888775 89999999643
No 17
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=9.4e-40 Score=322.68 Aligned_cols=209 Identities=19% Similarity=0.130 Sum_probs=171.1
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeEE----ecCcCCCC--cchhhHHhcccCCCcEEEEeeccCCcchHHhhcc
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQ----SYGNWNNR--VGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~----t~g~~n~~--~g~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~ 205 (440)
.++||||||||||||++||+++|++.|.++.. +.+|+++. ++.|.++ ..+++.+++|+|+|+++.+.+.+...
T Consensus 108 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~~~~p~~~-~~~~~~~~~V~E~ss~~~~~~~~~~~ 186 (326)
T 3eag_A 108 HWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQ-DPNSQSPFFVIEADEYDTAFFDKRSK 186 (326)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEECCCCCSS-CTTSCCCEEEEECCCSEEETTEEEEG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCcceecCCcccc-ccCCCCCEEEEEccccccchhhcccc
Confidence 68999999999999999999999999988643 23666654 5666655 55678999999999766554433322
Q ss_pred --ccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEeCCcHHHHhhcCC-CCCcEEEEeccCCcceEEE
Q 013570 206 --MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLV 282 (440)
Q Consensus 206 --~~~p~vaviTNi~~dHl~~~gs~e~~~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~-~~~~vi~~g~~~~ad~~~~ 282 (440)
.++|+++|||||++||||+|||+|+|+++|.+||+.+++++.+|+|.||+....+... ...++++||. ++++++.
T Consensus 187 ~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~--~~d~~~~ 264 (326)
T 3eag_A 187 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGT--EHGWQAG 264 (326)
T ss_dssp GGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHTTCCCSCEEEESS--SSSEEEE
T ss_pred eeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHhhccCCCEEEECC--CCcEEEE
Confidence 2599999999999999999999999999999999998889999999999998887622 2357899985 4688877
Q ss_pred eceEEEcCCeEEEEEeecCe-EEEEEeCcCcHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCC
Q 013570 283 AAQVANGGLGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQM 348 (440)
Q Consensus 283 ~~~i~~~~~~~~f~~~~~~~-~~~~~l~l~G~~nv~NalaAia~~~~lg~~~~~i~~~L~~~~~~~g 348 (440)
+ +. .++. |.+...+. ...++++++|+||++|+++|++++..+|++++.|+++|++|+++++
T Consensus 265 ~--~~--~~g~-f~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~lGi~~~~i~~~L~~f~gv~R 326 (326)
T 3eag_A 265 E--AN--ADGS-FDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVKR 326 (326)
T ss_dssp E--EC--TTSC-EEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCCEEC
T ss_pred E--ec--CCcE-EEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCC
Confidence 6 54 3455 77765433 2378999999999999999999999999999999999999998653
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.52 E-value=2.1e-14 Score=127.00 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCCh--hcHHHHHHH
Q 013570 333 LAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS--TERESHEKI 410 (440)
Q Consensus 333 ~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~--~~~~~~~~l 410 (440)
.++|+++|++|++++||||++...++++||+| |||||+||+++|+++++..+.+|+++|||. .+. +....+.++
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~~---g~~s~r~k~~~~~~ 86 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKGVVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLEP---RSNTMKMGVHKHEL 86 (163)
T ss_dssp ----------------CCEEEEEETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEECC---C---------CHHH
T ss_pred HHHHHHHHHhCCCCCCCeEEEecCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEECC---CCcchhhHHHHHHH
Confidence 46899999999999999999987689999999 999999999999999975435788899875 333 345566788
Q ss_pred HHHHHHcCCCEEEEEcCc
Q 013570 411 LSYCCDACIDLIGLVGDR 428 (440)
Q Consensus 411 ~~~~~~~~~d~vi~~G~~ 428 (440)
++.+. .+|.||++|+.
T Consensus 87 ~~~~~--~aD~vi~~~~~ 102 (163)
T 3mvn_A 87 ATSLQ--DADSVFIYQPP 102 (163)
T ss_dssp HHHHT--TCSEEEEECC-
T ss_pred HHHHh--cCCEEEEECCC
Confidence 88663 38999999965
No 19
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=92.38 E-value=0.27 Score=47.68 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=60.9
Q ss_pred cCHHHHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCC-CCceE
Q 013570 27 WTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGF 103 (440)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~-~~~~~ 103 (440)
|+++||++.+++++.++.+ |+++. .-++..+ ++|-|. +...|.+.+.+ ..|.++|+.++... ...+.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~~~i~~~~-~~~~a~~--~~i~fl------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~~~ 73 (341)
T 3eh0_A 4 IRLADLAQQLDAELHGDGDIVITGVA-SMQSAQT--GHITFM------VNPKYREHLGL-CQASAVVMTQDDLPFAKSAA 73 (341)
T ss_dssp EEHHHHHHHTTCEEESCSCCEECEEC-CTTTCCT--TEEEEC------CCSSGGGGGGG-CCCSEEEECTTTGGGCCSCE
T ss_pred ccHHHHHHHhCCEEeCCCCceEeeee-ccccCCC--CeEEEe------CCHHHHHHHhh-CCCCEEEECHHHhhhhccce
Confidence 6999999999999987544 66643 4456777 899765 23456666555 67778888765321 13346
Q ss_pred EEEcCCCCccHHHHHHHHHHHhhc
Q 013570 104 VQVEGNGNVNTLNSLVNMACYARN 127 (440)
Q Consensus 104 i~V~~~~~~d~~~al~~la~~~~~ 127 (440)
+.++ |+..++..+.+++..
T Consensus 74 ~~~~-----~p~~~~~~~~~~~~~ 92 (341)
T 3eh0_A 74 LVVK-----NPYLTYARMAQILDT 92 (341)
T ss_dssp EECS-----CHHHHHHHHHHHHCC
T ss_pred EEeC-----CHHHHHHHHHHHhcc
Confidence 8899 999999999986543
No 20
>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A
Probab=91.73 E-value=0.26 Score=48.23 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=63.3
Q ss_pred ccCHHHHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccC--CC-C
Q 013570 26 IWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN--NW-D 100 (440)
Q Consensus 26 ~~~~~~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~--~~-~ 100 (440)
.|+++||++.+++++.++.+ |+++..= .+..+ ++|=|. +...|.+.+.+ ..|.++|+.+... .+ +
T Consensus 7 ~~~~~~ia~~~~~~~~g~~~~~i~~~~~~-~~a~~--~~~~f~------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~~ 76 (357)
T 4e79_A 7 QYRLDELAHLVKGELIGEGSLQFSNLASL-ENAEV--NHLTFV------NGEKHLDQAKV-SRAGAYIVTAALKEHLPEK 76 (357)
T ss_dssp CEEHHHHHHHTTCEEESCTTCEECEECCT-TTCCT--TEEEEC------CSGGGHHHHHT-CCCSEEEECHHHHHTCTTC
T ss_pred cccHHHHHHHhCCEEECCCCceEEeecCh-hcCCC--CcEEEe------CChhHHHHHhc-CCCEEEEEcHHHhhhccCC
Confidence 37999999999999987544 6666543 45667 898665 33568887777 7888888876531 12 3
Q ss_pred ceEEEEcCCCCccHHHHHHHHHHHhh
Q 013570 101 KGFVQVEGNGNVNTLNSLVNMACYAR 126 (440)
Q Consensus 101 ~~~i~V~~~~~~d~~~al~~la~~~~ 126 (440)
.++++++ |+..++.++.+++.
T Consensus 77 ~~~i~~~-----~p~~~~~~~~~~~~ 97 (357)
T 4e79_A 77 DNFIIVD-----NPYLAFAILTHVFD 97 (357)
T ss_dssp CEEEECS-----CHHHHHHHHHTTSS
T ss_pred ccEEEEC-----CHHHHHHHHHHHhc
Confidence 5789899 99999999887443
No 21
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.66 E-value=0.31 Score=46.71 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=28.6
Q ss_pred CCcEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.++|||+ |=.|||||+.-|+..|.+.|++|.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVl 80 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 80 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEE
Confidence 46899999 567899999999999999999985
No 22
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=88.93 E-value=1.4 Score=42.84 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=65.3
Q ss_pred CCcEEEEeCCC---ChHHHHHHHHHHHHhCCCCeEE--ec--Cc-CCCCcchhhHHh--------------cc-cCCCcE
Q 013570 131 SGVLVGVTGSV---GKSTTKSMIALALESLGVNVFQ--SY--GN-WNNRVGVALSLI--------------GI-DRAVDI 187 (440)
Q Consensus 131 ~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~~~~--t~--g~-~n~~~g~p~~l~--------------~~-~~~~~~ 187 (440)
+.+.|.||||. |||+|+..|.+.|++.|+++.. +. |. .+...|+|+.-. .. .++.++
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~ 247 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI 247 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence 46789999984 9999999999999999999743 11 11 112233332111 11 468899
Q ss_pred EEEeeccC--Ccch---HHhhccccCCcEEEEcC-CChhhhccC------CCHHHHHHHHHHh
Q 013570 188 AVLEMGMS--GKGE---ILELARMARPEIRVVLN-VGDSHLESL------GSLEDVARAKGEI 238 (440)
Q Consensus 188 ~VlE~g~~--~~g~---~~~~~~~~~p~vaviTN-i~~dHl~~~------gs~e~~~~~K~~i 238 (440)
.++|-.-+ ++.. -..+....+|+..|+.- -++.|++.+ +++++..+.-..+
T Consensus 248 ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l 310 (350)
T 2g0t_A 248 VFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETL 310 (350)
T ss_dssp EEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHS
T ss_pred EEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHh
Confidence 99997421 1211 11123346999998855 566666544 5666655444333
No 23
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.83 E-value=0.84 Score=40.25 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhh-cCCCCCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 115 LNSLVNMACYAR-NSRFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 115 ~~al~~la~~~~-~p~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+.+..++.... .+..+..+|+|+|.+ ||||++.+|...|...+..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 445666666332 223446799999986 899999999999976676653
No 24
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.59 E-value=1 Score=42.07 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=35.9
Q ss_pred HHHHHHHHHH--hhcCCCCCcEEEEeCC---CChHHHHHHHHHHHHhCCCCeEE
Q 013570 115 LNSLVNMACY--ARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 115 ~~al~~la~~--~~~p~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
.+++..|... +..+..+.++|+||++ .||||++.-|+..|.+.|.+|..
T Consensus 63 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLL 116 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLI 116 (271)
T ss_dssp HHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 4555555541 2223456789999965 69999999999999888988853
No 25
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=88.55 E-value=1 Score=44.23 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=60.8
Q ss_pred cCHHHHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCccCCcccchHHHHhcCCCeEEEeccccCC-CCceE
Q 013570 27 WTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGF 103 (440)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~Ga~~vv~~~~~~~-~~~~~ 103 (440)
|+++||++.+++++.++.+ |+++. .-++..+ ++|-|. +...|.+.+.+ ..|.++|+.+.... ...+.
T Consensus 26 ~~~~~ia~~~~~~~~g~~~~~i~~~~-~~~~a~~--~~l~fl------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~~~ 95 (372)
T 3pmo_A 26 YTLGQLAAHVGAEVRGDADLPIQGLA-TLQEAGP--AQLSFL------ANPQYRKYLPE-SRAGAVLLTAADADGFAGTA 95 (372)
T ss_dssp EEHHHHHHHHTCEEESCTTCEEEEEE-CGGGCCT--TSEEEC------CCGGGGGGGGG-CCCSEEEECHHHHTTCSSCE
T ss_pred ccHHHHHHHhCCEEECCCCceEeeec-ChhhCCC--CeEEEE------CCHHHHHHHhc-CCCcEEEEcHHHHhhccccE
Confidence 6999999999999987544 66644 3456677 899665 33457766655 67888888764221 13467
Q ss_pred EEEcCCCCccHHHHHHHHHHHhhc
Q 013570 104 VQVEGNGNVNTLNSLVNMACYARN 127 (440)
Q Consensus 104 i~V~~~~~~d~~~al~~la~~~~~ 127 (440)
+.++ |+..++..+.+++..
T Consensus 96 l~~~-----~p~~~~~~~~~~~~~ 114 (372)
T 3pmo_A 96 LVVA-----NPYLAYASLSHLFDR 114 (372)
T ss_dssp EECS-----CHHHHHHHHHGGGCC
T ss_pred EEEC-----CHHHHHHHHHHHhcc
Confidence 8899 999999888875543
No 26
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.43 E-value=0.53 Score=40.83 Aligned_cols=32 Identities=25% Similarity=0.063 Sum_probs=27.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+++|+|+|.. ||||+...|...|+..|+++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~ 36 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVG 36 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeee
Confidence 47899999985 999999999999988888874
No 27
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=88.18 E-value=0.49 Score=43.06 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=29.6
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHhCCCCeEE
Q 013570 130 FSGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 130 ~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
.+++.|-|||| .|||+++..|...|++.|++|..
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~ 38 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLC 38 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEE
Confidence 35788999998 59999999999999999999853
No 28
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.09 E-value=0.47 Score=41.61 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=26.9
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++|+|+ |-.||||++..|+..|.+.|.+|.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vl 34 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIA 34 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 4689998 557799999999999998999885
No 29
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=87.24 E-value=1.2 Score=42.24 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=36.0
Q ss_pred HHHHHHHHHH--HhhcCCCCCcEEEEeCC---CChHHHHHHHHHHHHhCCCCeEE
Q 013570 114 TLNSLVNMAC--YARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 114 ~~~al~~la~--~~~~p~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
..+++..|.. .+..+..+.++|.||++ .||||++.-|+..|.+.|.+|..
T Consensus 84 ~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLL 138 (299)
T 3cio_A 84 AVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF 138 (299)
T ss_dssp HHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEE
Confidence 3455555543 12222456789999976 69999999999999888988853
No 30
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=87.20 E-value=0.47 Score=42.36 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=26.6
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
++|+||++ .||||++.-|+..|.+.|++|..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 57888865 79999999999999999999853
No 31
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=86.58 E-value=1.3 Score=41.70 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=34.2
Q ss_pred HHHHHHHHH--HhhcCCCCCcEEEEeCC---CChHHHHHHHHHHHHhCCCCeE
Q 013570 115 LNSLVNMAC--YARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 115 ~~al~~la~--~~~~p~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+++..|.. .+..+..+.++|+||++ .||||++.-|+..|.+.|.+|.
T Consensus 73 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL 125 (286)
T 3la6_A 73 IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVL 125 (286)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence 344444443 22223456789999865 5899999999999988888875
No 32
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=84.07 E-value=0.86 Score=41.13 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.2
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHhC-CCCeE
Q 013570 131 SGVLVGVT---GSVGKSTTKSMIALALESL-GVNVF 162 (440)
Q Consensus 131 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~-g~~~~ 162 (440)
..++|+|+ |-.||||++..|+..|.+. |++|.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vl 38 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVL 38 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEE
Confidence 46789998 5678999999999999777 88885
No 33
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=82.96 E-value=0.99 Score=41.39 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=28.1
Q ss_pred CCcEEEEeCCC---ChHHHHHHHHHHHHhCCCCeEE
Q 013570 131 SGVLVGVTGSV---GKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 131 ~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+.++|+|+++. ||||++..|+..|.+.|++|..
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll 40 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLL 40 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEE
Confidence 46899998554 7999999999999888999853
No 34
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=82.90 E-value=1.2 Score=39.95 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.3
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
++|+|+++ .||||++..|+..|.+.|++|..
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLA 36 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 57888754 58999999999999888999853
No 35
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=82.81 E-value=1.2 Score=41.04 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=29.3
Q ss_pred CCCcEEEEeCCC---ChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+++.|-||||. |||+++..|...|++.|++|.
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~ 59 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVA 59 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 457889999986 999999999999999999984
No 36
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=81.48 E-value=1.4 Score=41.41 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=27.7
Q ss_pred CCCCcEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+.++|+|+ |-.||||++.-|+..|.+.|++|.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vl 73 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 73 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 3457888888 456899999999999988999985
No 37
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=80.98 E-value=3.6 Score=36.23 Aligned_cols=44 Identities=25% Similarity=0.214 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeCCC--ChHHHHHHHHHHHHhCC
Q 013570 115 LNSLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLG 158 (440)
Q Consensus 115 ~~al~~la~~~~~p~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g 158 (440)
...+..++.....-..+..+|+|.|-| ||||+..+|..++...|
T Consensus 5 ~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp HHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 345666666433212456799999987 89999999999996544
No 38
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=80.38 E-value=1.7 Score=39.89 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=28.5
Q ss_pred CcEEEEeCC---CChHHHHHHHHHHHHhCCCCeEE
Q 013570 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 132 ~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
.+.|-|||| .|||+++..|.+.|++.|++|..
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~ 55 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTIL 55 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEE
Confidence 578999998 69999999999999999999853
No 39
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=80.03 E-value=1.7 Score=39.47 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=26.3
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
++|+|+ |-.||||++..|+..|.+.|++|..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 678887 4568999999999999889999853
No 40
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.89 E-value=1.8 Score=41.48 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
+..+|+|+|.+ |||||+..|+..|...|.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 35689999775 799999999999988888875
No 41
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=79.61 E-value=2.8 Score=42.24 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEeCCCChHHH-HHHHHHHHHh
Q 013570 134 LVGVTGSVGKSTT-KSMIALALES 156 (440)
Q Consensus 134 vI~VTGTnGKTTT-~~ml~~iL~~ 156 (440)
+|+|| |||||++ +.+|..-|++
T Consensus 123 ~iaIs-T~Gksp~la~~ir~~ie~ 145 (457)
T 1pjq_A 123 MVAVS-SGGTSPVLARLLREKLES 145 (457)
T ss_dssp EEEEE-CTTSCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHHH
Confidence 89999 9999998 8888888854
No 42
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=79.44 E-value=1.7 Score=40.51 Aligned_cols=31 Identities=32% Similarity=0.283 Sum_probs=26.9
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
++|+|+ |-.||||++..|+..|.+.|++|..
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll 38 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAV 38 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 589998 5668999999999999989999853
No 43
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=79.18 E-value=2.9 Score=39.01 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEe-----CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVT-----GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VT-----GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++..+..+-+..+. . .++|+|+ |-.||||++..|+..|...|++|.
T Consensus 18 ~~~~~~~~~~r~~~~-~--~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVl 69 (298)
T 2oze_A 18 EELKILEELRRILSN-K--NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVL 69 (298)
T ss_dssp HHHHHHHHHHHHHHH-H--CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hhHHHHHHHHHHhcC-C--CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEE
Confidence 344555444443332 2 3344444 568999999999999988999985
No 44
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=78.66 E-value=1.9 Score=39.46 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=24.7
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|+|. |-.||||++..|+..|.+.|++|.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vl 33 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIM 33 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEE
Confidence 455554 667999999999999988898985
No 45
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=78.58 E-value=2.4 Score=38.91 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=27.7
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhCCCCeEE
Q 013570 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
..++|+|+++ .||||++..|+..|.+.|++|..
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vll 52 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGI 52 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 3578999865 57999999999999889999853
No 46
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=78.52 E-value=2.1 Score=39.89 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=26.0
Q ss_pred CcEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++|+|+ |-.||||++.-|+..|.+.|++|.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVl 34 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVM 34 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 4566665 668999999999999988999985
No 47
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=78.36 E-value=2.4 Score=40.31 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=27.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
+..+|+|+|.+ |||||+..|+..|...|.++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 34689999886 799999999999988888874
No 48
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=78.31 E-value=1.7 Score=39.96 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=26.7
Q ss_pred CCCCcEEEEeCC---CChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+.++|+|++. .||||++..|+..|. .|++|.
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vl 59 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVL 59 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEE
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEE
Confidence 445789999855 579999999999996 898885
No 49
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.38 E-value=1.5 Score=41.51 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=25.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh-CCCCeE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALES-LGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~-~g~~~~ 162 (440)
+..+|+++|.+ |||||+..|+..+.. .|.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~ 138 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA 138 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 35577777654 899999999999974 787874
No 50
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=76.50 E-value=4.6 Score=40.47 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=26.3
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
.++|.++|.+ |||||+.-|+..|...|.+|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4688888764 799999999999988898884
No 51
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=75.76 E-value=2.6 Score=37.28 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=23.9
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 134 LVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 134 vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+|+|+ |-.||||++..|+..|.+.| +|.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vl 32 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETL 32 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEE
Confidence 56676 67799999999999998888 885
No 52
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=75.60 E-value=2.8 Score=38.22 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=25.8
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
++|+|+ |-.||||++..|+..|.+.|++|..
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTI 36 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 577776 4568999999999999888999853
No 53
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=75.41 E-value=3.3 Score=35.66 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=25.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeEEe
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t 164 (440)
+|+|||. .||||.+.+|++.|...|+.+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 5889985 689999999999998889887643
No 54
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=75.25 E-value=2.9 Score=40.98 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=29.8
Q ss_pred hhcCCCCCcEEEEe---CCCChHHHHHHHHHHHHh------CCCCeE
Q 013570 125 ARNSRFSGVLVGVT---GSVGKSTTKSMIALALES------LGVNVF 162 (440)
Q Consensus 125 ~~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~------~g~~~~ 162 (440)
++.+....++|+|+ |-.||||++..|+..|.. .|++|.
T Consensus 101 ~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVl 147 (398)
T 3ez2_A 101 YRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRIL 147 (398)
T ss_dssp GGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEE
T ss_pred cCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEE
Confidence 34445568899999 557899999999999963 578874
No 55
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=74.75 E-value=4.7 Score=37.91 Aligned_cols=29 Identities=24% Similarity=0.146 Sum_probs=23.8
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHhC
Q 013570 129 RFSGVLVGVTGS--VGKSTTKSMIALALESL 157 (440)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~ 157 (440)
..+..+|+|+|. .||||++.+|...|...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 345679999996 68999999999999643
No 56
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=74.65 E-value=2.6 Score=41.10 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=28.4
Q ss_pred CCCcEEEEeC---CCChHHHHHHHHHHHHhCCCCeEE
Q 013570 130 FSGVLVGVTG---SVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 130 ~~~~vI~VTG---TnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
.+.++|+|++ -.||||++.-|+..|.+.|.+|..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVll 177 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFY 177 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEE
Confidence 4578999985 458999999999999888988853
No 57
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=74.00 E-value=3.4 Score=39.41 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=27.6
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 131 SGVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 131 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
.+++|.|+ |-.||||++.-++..|.+.|.+|..
T Consensus 12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLl 47 (324)
T 3zq6_A 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLV 47 (324)
T ss_dssp TBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEE
Confidence 34677777 7788999999999999999999853
No 58
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=73.49 E-value=4.1 Score=35.17 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=26.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++++|+|. .||||+...|...|...++++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~ 38 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCcee
Confidence 689999998 4899999998888877888874
No 59
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=72.85 E-value=1.7 Score=42.79 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=23.5
Q ss_pred hcCCCCCcEEEEe---CCCChHHHHHHHHHHHH------hCCCCeE
Q 013570 126 RNSRFSGVLVGVT---GSVGKSTTKSMIALALE------SLGVNVF 162 (440)
Q Consensus 126 ~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~------~~g~~~~ 162 (440)
+.+..+.++|+|+ |-.|||||+..|+..|. ..|++|.
T Consensus 105 r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVl 150 (403)
T 3ez9_A 105 RDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRIL 150 (403)
T ss_dssp HHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEE
T ss_pred CCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEE
Confidence 3335568899999 66799999999999996 3578874
No 60
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=72.55 E-value=4 Score=39.44 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCCCcEEEEe---CCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 129 RFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 129 ~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
..+.++|.|+ |-.||||++.-++..|.+.|++|..
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLl 59 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVI 59 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEE
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 4557788887 6678999999999999999999853
No 61
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=72.32 E-value=1.9 Score=41.96 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=26.8
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+++|+|+ |-.||||++.-|+..|.+.|++|..
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLl 35 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLY 35 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 4678887 4468999999999999889999853
No 62
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=72.30 E-value=4.7 Score=34.48 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=25.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeEEe
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t 164 (440)
+|++||. .||||.+.+|+.-|...|+.+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5788876 589999999999997778877543
No 63
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=72.11 E-value=4.3 Score=34.83 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=27.2
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+..+|.++|- .||||.+..|+..|...|+++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 34568999987 6799999999999987777763
No 64
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=71.95 E-value=2.2 Score=40.09 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=22.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCC
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGV 159 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~ 159 (440)
+..+|+|||.. ||||++.+|+..|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~ 34 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGV 34 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 45689999985 899999999999854444
No 65
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=71.62 E-value=5.3 Score=33.97 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=25.7
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|++||.+ ||||+..+|+..|...|+.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 5689999985 899999999999977676654
No 66
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=70.92 E-value=4 Score=35.68 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=26.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|.|+|. .||||.+.+|+.-|...++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 468999986 7999999999999977787764
No 67
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=70.62 E-value=3.2 Score=37.68 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=20.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+|||+|-| ||||++.+|..+|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999987 7999999999988
No 68
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=70.47 E-value=3.2 Score=35.71 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=25.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++|+|+|.+ ||||+..+|..++...|++++
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G 34 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVA 34 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceE
Confidence 4689999975 799999999999988777763
No 69
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=69.91 E-value=4.2 Score=35.47 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=26.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+..+|+|+|. .||||.+.+|+.-|...++.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3568999986 6999999999999977777763
No 70
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=69.83 E-value=6.8 Score=37.42 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=23.9
Q ss_pred HhhcC-CCCCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 124 YARNS-RFSGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 124 ~~~~p-~~~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+...+ .....+|||+|.+ ||||++.+|..+|.
T Consensus 83 ~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 83 FLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44442 2334589999976 79999999999994
No 71
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=69.80 E-value=2.9 Score=36.72 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+|+|+|-+ ||||+..+|..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999986 5999999999998
No 72
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=69.07 E-value=4.5 Score=40.45 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=26.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|.++|.+ |||||+..|+..|...|.+|.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVl 129 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVG 129 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 5689998865 599999999999999999884
No 73
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=68.88 E-value=5.1 Score=34.15 Aligned_cols=30 Identities=37% Similarity=0.364 Sum_probs=24.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|.|+|. .||||.+..|+.-|...|+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 33 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEE
Confidence 46778876 7999999999999976666653
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=68.06 E-value=5.6 Score=37.57 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=26.1
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
..++++.|-| |||||...|+.+++..+.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4588888877 799999999999987777764
No 75
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=67.44 E-value=6.4 Score=37.21 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=26.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
+..+|+|.|-| ||||+...|+.+++..+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 35688888876 699999999999987777764
No 76
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=66.88 E-value=5.2 Score=38.69 Aligned_cols=108 Identities=25% Similarity=0.251 Sum_probs=63.0
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhCCCCeEEe-cCc---CCCCcchhhH-------------H-hcccCCCcEEE
Q 013570 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQS-YGN---WNNRVGVALS-------------L-IGIDRAVDIAV 189 (440)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~~~~t-~g~---~n~~~g~p~~-------------l-~~~~~~~~~~V 189 (440)
+.+.|.|||| .|||+|+..|.+.|++.|+++... .|. .....|+|.. + ....++.|+.+
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~~~~~~~d~vl 230 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRYGKNYDILH 230 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHHHHTTTCSEEE
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHHHhccCCCEEE
Confidence 4678999998 599999999999999999998531 111 0011122221 1 12355789999
Q ss_pred EeeccC--Ccc--hHHhhccccCCc-EEEEcCCChhhhccC-----CCHHHHHHHHHHh
Q 013570 190 LEMGMS--GKG--EILELARMARPE-IRVVLNVGDSHLESL-----GSLEDVARAKGEI 238 (440)
Q Consensus 190 lE~g~~--~~g--~~~~~~~~~~p~-vaviTNi~~dHl~~~-----gs~e~~~~~K~~i 238 (440)
+|-.-+ ++. ....+....+|+ +.+....++-|++.| +++++....-..+
T Consensus 231 VEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l 289 (349)
T 2obn_A 231 IEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETV 289 (349)
T ss_dssp ECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHH
T ss_pred EeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHH
Confidence 996311 111 111233334777 666666676666444 3455554444443
No 77
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=66.51 E-value=3.4 Score=37.65 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHH
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
|..+.|+..... +..+..+|+|||. .||||++.+|+..|
T Consensus 6 ~~~~~~~~~~~~---~~~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 6 DSEQTLQNHQQP---NGGEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp ------------------CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred chHHHHHHhhhc---cCCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 555666655542 1334568999997 59999999999877
No 78
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=65.19 E-value=7.4 Score=37.24 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=26.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
+..+|++.|-| |||||...|+.+++..+.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 45688888876 699999999999988888874
No 79
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=64.69 E-value=3.4 Score=36.03 Aligned_cols=26 Identities=42% Similarity=0.662 Sum_probs=20.6
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+|+|||.+ ||||++.+|+. + |+.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~i 29 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYVL 29 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEEE
Confidence 579999875 89999999988 5 55543
No 80
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=64.34 E-value=4.6 Score=34.98 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+|+++|-| ||||+..+|..++
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999987 7999999999876
No 81
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=63.87 E-value=4.6 Score=38.15 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
.+..+|||+|.+ ||||+..+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456799999986 59999999999994
No 82
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=63.33 E-value=26 Score=32.41 Aligned_cols=69 Identities=10% Similarity=0.189 Sum_probs=53.6
Q ss_pred EEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEE
Q 013570 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425 (440)
Q Consensus 352 ~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~ 425 (440)
+++..+|..||.- -+| .++...++.+++.. +.|+.+|+|++- +...+++..++..+++.+.++++++++
T Consensus 167 vi~~~~GlvvitG-CsH--~GI~Niv~~a~~~~-g~~i~~viGGfH-L~~~~~~~l~~tl~~l~~~~~~~i~~~ 235 (267)
T 3h3e_A 167 VVRTKEGLVVITG-CSH--RGIDNILLDIAETF-NERIKMVVGGFH-LLKSSDDEIEKIVKAFNELGVETVVPC 235 (267)
T ss_dssp EEEETTEEEEEES-CCT--TCHHHHHHHHHTTC-SSCEEEEEEECC-CTTSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEcCCcEEEEeC-CCC--cCHHHHHHHHHHHh-CCCceEEEeccc-cCCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 4455577778877 466 57888889888887 478899999954 555667778889999999999988874
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=62.97 E-value=7.7 Score=37.66 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=26.1
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|++.|-| |||||...|+.+++..+.++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 4588888887 799999999999987777764
No 84
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=62.40 E-value=5.6 Score=34.77 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=20.9
Q ss_pred EEEEeCCCC--hHHHHHHHHHHHHhCC
Q 013570 134 LVGVTGSVG--KSTTKSMIALALESLG 158 (440)
Q Consensus 134 vI~VTGTnG--KTTT~~ml~~iL~~~g 158 (440)
+++|+|-|| |||+..+|...++..|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 577887775 9999999999997666
No 85
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=62.24 E-value=5.8 Score=33.12 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
++|.|+|. .||||++.+|+..|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899997 57999999999888
No 86
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=62.08 E-value=5.8 Score=33.25 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+.+|+|||. .||||++.+|+.-| |+.+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~~i 36 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLEVL 36 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH---TCCEE
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 4778999997 68999999999988 45543
No 87
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=61.43 E-value=5.9 Score=34.34 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
++|+|||. .||||++.+|+..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 38999997 59999999999988
No 88
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=60.67 E-value=6.9 Score=37.13 Aligned_cols=27 Identities=41% Similarity=0.549 Sum_probs=23.3
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHh
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALALES 156 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (440)
.+..+|||.|.| ||||+..+|..++..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 446799999987 899999999999954
No 89
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=60.30 E-value=9 Score=38.93 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=26.3
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|+|.|-| ||||+...|+.+++..+.++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 4588888887 799999999999987777774
No 90
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=59.82 E-value=5.6 Score=34.33 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+..+|+|||. .||||++.+|+.. |+.+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~i 36 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW----GYPVL 36 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC----CCEEE
Confidence 445678999986 5899999998874 66554
No 91
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=59.77 E-value=6.2 Score=34.55 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=22.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|+|||- .||||++.+|+..| |+.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g~~vi 41 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---GAHVV 41 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---CCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCEEE
Confidence 468999987 69999999999876 55554
No 92
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=59.49 E-value=5.6 Score=34.63 Aligned_cols=26 Identities=38% Similarity=0.708 Sum_probs=20.5
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+|++||.+ ||||++.+|+. | |+.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l---g~~~i 30 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L---GVPLV 30 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T---TCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C---CCccc
Confidence 479999985 89999999977 3 65543
No 93
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=59.38 E-value=7.1 Score=33.62 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEeCCCC--hHHHHHHHHHHH
Q 013570 134 LVGVTGSVG--KSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGTnG--KTTT~~ml~~iL 154 (440)
.++++|-|| |||+..+|..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 589999987 999999999998
No 94
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=58.78 E-value=8 Score=33.60 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+|+|+|-+ ||||+..+|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999986 6999999999888
No 95
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=58.71 E-value=9.5 Score=33.11 Aligned_cols=31 Identities=32% Similarity=0.304 Sum_probs=25.1
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhCCCC
Q 013570 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVN 160 (440)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~ 160 (440)
.+..+|+|+|- .||||+..+|+..|...|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 34679999998 57999999999999755543
No 96
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=58.65 E-value=7.4 Score=34.31 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.4
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+|+|||.+ ||||++.+|+..|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999985 5999999999887
No 97
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=57.59 E-value=9 Score=32.21 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.6
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHH
Q 013570 129 RFSGVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
..+..+|+++|- .||||+..+|+..+
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 345678999998 57999999999887
No 98
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=57.58 E-value=22 Score=34.13 Aligned_cols=34 Identities=35% Similarity=0.388 Sum_probs=27.6
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+.++|+|+|. .||||+..-|...|...|.++.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~ 111 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVA 111 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 445779999985 5799999999888877888863
No 99
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=56.94 E-value=7.7 Score=34.01 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEec
Q 013570 141 VGKSTTKSMIALALESLGVNVFQSY 165 (440)
Q Consensus 141 nGKTTT~~ml~~iL~~~g~~~~~t~ 165 (440)
.||||.+.+|+.-|++.|+++..+.
T Consensus 11 sGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 11 SGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6999999999999999999986553
No 100
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=56.74 E-value=12 Score=37.38 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.7
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHhC-CCCeE
Q 013570 132 GVLVGVTG--SVGKSTTKSMIALALESL-GVNVF 162 (440)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~-g~~~~ 162 (440)
.++|.|+| -.|||||+.-|+..|... |++|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVl 133 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVL 133 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 45777775 468999999999999888 98885
No 101
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=56.43 E-value=5.5 Score=35.53 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=15.4
Q ss_pred CcEEEEeCCC--ChHHHHHHHH-HHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIA-LAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~-~iL 154 (440)
..+|+|+|-| ||||+..+|. .++
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999998 6999999998 776
No 102
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=55.48 E-value=5.6 Score=34.23 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.6
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
++|+|+|-| ||||+..+|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468899877 59999999999884
No 103
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=55.30 E-value=14 Score=32.73 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=27.6
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeEEe
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQS 164 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~~t 164 (440)
..+|.+.|.. ||||.+..|..-|...|+++..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4678888865 79999999999998889888644
No 104
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=55.12 E-value=13 Score=32.95 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=25.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCC-CeEEe
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGV-NVFQS 164 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~-~~~~t 164 (440)
.++|.+.|.. ||||.+..|...|+..|+ .+..+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 3577777765 699999999999999988 55433
No 105
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=54.98 E-value=13 Score=33.67 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=27.2
Q ss_pred CCCCcEEEEeCCC--ChHHHHHHHHHHHHhCCCC-eEE
Q 013570 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVN-VFQ 163 (440)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~-~~~ 163 (440)
..+..+|.|.|-. ||||.+..|...|...|++ +..
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~ 61 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITR 61 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeee
Confidence 3345688888864 7999999999999999988 443
No 106
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=54.83 E-value=13 Score=34.89 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=26.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+..+|+|+|- .||||++..|+..+...+.++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~ 130 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3568999975 5799999999999988888874
No 107
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=54.39 E-value=25 Score=32.92 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|+++|- .||||++..|+..+...|.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 458888875 4799999999999988888874
No 108
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=53.94 E-value=7.2 Score=32.68 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.3
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+|+|+|.+ ||||+..+|+..|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578999985 8999999999887
No 109
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=53.67 E-value=6.9 Score=33.82 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+|+|+|.+ ||||++.+|...+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999986 7999999998877
No 110
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=53.17 E-value=41 Score=33.34 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|+|+|- .|||||+.-|+..|...|++|.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 357777764 5899999999999988888874
No 111
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=53.11 E-value=8.7 Score=32.11 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
++|.|+|. .||||.+.+|+..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 56888886 69999999999988
No 112
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=52.35 E-value=24 Score=33.63 Aligned_cols=33 Identities=33% Similarity=0.368 Sum_probs=27.7
Q ss_pred CCCCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCe
Q 013570 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~ 161 (440)
..+..+|+++|.+ ||||+...|...+...+.++
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4567899999986 79999999999997777775
No 113
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=51.93 E-value=47 Score=29.63 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 370 p~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
...++++++.+++..+.-..+++.|++.+.|.. ...+.+.+.+.+.++..+++.|++-
T Consensus 25 ~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~l~~p~~~v~GNHD 82 (274)
T 3d03_A 25 NAANADVVSQLNALRERPDAVVVSGDIVNCGRP--EEYQVARQILGSLNYPLYLIPGNHD 82 (274)
T ss_dssp HHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCH--HHHHHHHHHHTTCSSCEEEECCTTS
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHhcCCCEEEECCCCC
Confidence 478899999887754234688899998876643 3345677777776677888999854
No 114
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=51.49 E-value=21 Score=32.17 Aligned_cols=40 Identities=13% Similarity=-0.025 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHH
Q 013570 115 LNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 115 ~~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
...+..++.-+..+..+..+|.|+|- .||||.+.+|..-+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555666644332345568999997 47999999998777
No 115
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=50.07 E-value=15 Score=34.01 Aligned_cols=33 Identities=33% Similarity=0.372 Sum_probs=29.6
Q ss_pred CCCcEEEEeC----CCChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTG----TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.++|-|-||| +-||.-|++-|..+|++.|++|.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt 57 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcce
Confidence 3478899998 78999999999999999999984
No 116
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=50.01 E-value=12 Score=35.72 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=25.3
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHhCCCCeEE
Q 013570 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
++|.|+ |-.||||++..++..|.+.|++|..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVll 52 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLL 52 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 345555 6789999999999999889999853
No 117
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=49.97 E-value=16 Score=31.39 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
..+|.|+|. .||||.+..|+.-|...| ++
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~ 34 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DV 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CE
Confidence 357899986 799999999999995444 44
No 118
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=49.71 E-value=28 Score=29.22 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcCC-CCCcEEEEeCCC--ChHHHHHHHHHHHH-hCCCCe
Q 013570 114 TLNSLVNMACYARNSR-FSGVLVGVTGSV--GKSTTKSMIALALE-SLGVNV 161 (440)
Q Consensus 114 ~~~al~~la~~~~~p~-~~~~vI~VTGTn--GKTTT~~ml~~iL~-~~g~~~ 161 (440)
-.+++..+-.+...-. .+...+.++|.+ ||||+...+...+. ..|..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~ 70 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 3445544444443311 235789999875 69999999999986 556554
No 119
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=48.94 E-value=6.1 Score=35.24 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=22.8
Q ss_pred EEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 135 VGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 135 I~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|+|+ |-.||||++.-|+..|.+.|++|.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vl 32 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIY 32 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4444 556799999999999988888884
No 120
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=48.82 E-value=18 Score=30.48 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=21.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCC
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLG 158 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g 158 (440)
.+|.|+|. .||||.+..|+.-|...|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 57888886 699999999999996555
No 121
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=48.78 E-value=14 Score=31.48 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=19.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALA 153 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~i 153 (440)
+.+.|++||.. ||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999985 699999999887
No 122
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=48.42 E-value=10 Score=33.24 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+.++|+|+|-+ ||||+..+|...+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999987 6999999998776
No 123
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=48.06 E-value=13 Score=30.75 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 013570 134 LVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.|.|+|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 5788886 69999999999988
No 124
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=47.99 E-value=13 Score=31.38 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=19.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.++|+++|. .||||.+.+|+.-|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999987 58999999999877
No 125
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=47.17 E-value=11 Score=31.91 Aligned_cols=22 Identities=36% Similarity=0.283 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
++|.|+|. .||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 45888886 79999999999988
No 126
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=46.71 E-value=14 Score=35.51 Aligned_cols=31 Identities=32% Similarity=0.338 Sum_probs=24.9
Q ss_pred CcEEEEe--CCCChHHHHHHHHHHHH--hCCCCeE
Q 013570 132 GVLVGVT--GSVGKSTTKSMIALALE--SLGVNVF 162 (440)
Q Consensus 132 ~~vI~VT--GTnGKTTT~~ml~~iL~--~~g~~~~ 162 (440)
.+++.++ |-.||||++..++..|. ..|.+|.
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vl 52 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFL 52 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEE
Confidence 3455554 67899999999999997 7898885
No 127
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=46.61 E-value=20 Score=35.69 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHHHhCCC-Ce
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGV-NV 161 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~-~~ 161 (440)
+=++|+..+..+...+.. .+.|+|- .||||+...+...|...+. ++
T Consensus 29 ~Q~~av~~~~~~i~~~~~---~~li~G~aGTGKT~ll~~~~~~l~~~~~~~i 77 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKKH---HVTINGPAGTGATTLTKFIIEALISTGETGI 77 (459)
T ss_dssp HHHHHHHHHHHHHHSSSC---EEEEECCTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHhcCCC---EEEEEeCCCCCHHHHHHHHHHHHHhcCCceE
Confidence 445667666665544121 4555543 3899999888888877776 44
No 128
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=46.21 E-value=14 Score=32.85 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+..||+||. .||||++.+++. + |+.++
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~---g~~vi 37 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-R---GASLV 37 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-T---TCEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-C---CCcEE
Confidence 34778999997 689999998876 4 77764
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=45.76 E-value=21 Score=34.09 Aligned_cols=33 Identities=36% Similarity=0.430 Sum_probs=27.5
Q ss_pred CCCCcEEEEeCCCC--hHHHHHHHHHHHHhCCCCe
Q 013570 129 RFSGVLVGVTGSVG--KSTTKSMIALALESLGVNV 161 (440)
Q Consensus 129 ~~~~~vI~VTGTnG--KTTT~~ml~~iL~~~g~~~ 161 (440)
..+..+|+|+|.+| |||+..+|..++...+.++
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 34578999999986 9999999999997766665
No 130
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=45.69 E-value=20 Score=36.51 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=25.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+.++|+|+|. .|||||+.-|+..|...|.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVl 133 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTC 133 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 3568888876 5799999999999988888874
No 131
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=45.69 E-value=13 Score=32.39 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.9
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
.+..+++|.|-| ||||+..+|..++.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346799999988 79999999999883
No 132
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=45.44 E-value=20 Score=35.57 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=25.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|+++|- .||||++..|+..|...|.++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 457888765 4899999999999988888874
No 133
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=45.02 E-value=16 Score=31.56 Aligned_cols=23 Identities=35% Similarity=0.242 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.++|+|+|-+ ||||++..|+..|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999975 7999999999888
No 134
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=44.91 E-value=21 Score=36.05 Aligned_cols=35 Identities=37% Similarity=0.381 Sum_probs=30.0
Q ss_pred CCCCcEEEEeCC------CChHHHHHHHHHHHHhCCCCeEE
Q 013570 129 RFSGVLVGVTGS------VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 129 ~~~~~vI~VTGT------nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+.+.++|.||.+ -|||||+.=|+..|.+.|.++..
T Consensus 54 ~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLL 94 (557)
T 3pzx_A 54 KPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 (557)
T ss_dssp SCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEE
Confidence 456789999977 57999999999999999999853
No 135
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=44.87 E-value=18 Score=32.26 Aligned_cols=25 Identities=28% Similarity=0.516 Sum_probs=21.1
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+..+|+|+|.+ ||||+..+|+..|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346689999976 7999999999877
No 136
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=44.73 E-value=8.1 Score=33.65 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=19.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
+..+|+|+|. .||||++.+|...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999995 67999999888765
No 137
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=44.47 E-value=14 Score=32.18 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=18.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.++++|.|-| ||||+..+|...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568888876 8999999999887
No 138
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=44.17 E-value=30 Score=30.07 Aligned_cols=33 Identities=15% Similarity=0.012 Sum_probs=22.6
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+.+++.+||. .||||...-+..-+...|.++.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~ 40 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ 40 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 44679999999 6666655544444446888874
No 139
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=44.10 E-value=17 Score=33.37 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=23.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhC-CCCe
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESL-GVNV 161 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~-g~~~ 161 (440)
..+++|+|-| ||||+..+|...+... ..++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I 57 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 57 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE
Confidence 5689999987 8999999999998643 3344
No 140
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=43.81 E-value=15 Score=35.08 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 139 GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 139 GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|-.||||++.-++..|.+.|.+|.
T Consensus 25 GGvGKTt~a~~lA~~la~~g~~vl 48 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVRRSVL 48 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTSSSCEE
T ss_pred CCccHHHHHHHHHHHHHhCCCcEE
Confidence 778999999999999988888885
No 141
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=43.75 E-value=24 Score=31.48 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeEEe
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t 164 (440)
+..+|.|.|- .||||.+.+|...|.. |+.+..+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4568889987 5799999999999966 7776543
No 142
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=43.64 E-value=21 Score=30.64 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=19.7
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
..+|.|+|. .||||.+.+|+.-|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899987 58999999999888
No 143
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=43.52 E-value=20 Score=30.94 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=19.6
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.++|.++|.. ||||++..|+..|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5678888875 8999999999988
No 144
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=43.09 E-value=26 Score=31.79 Aligned_cols=31 Identities=35% Similarity=0.387 Sum_probs=24.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+++|.++|- .||||.+..|+.-|...|+.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 457777774 5999999999999977787764
No 145
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=42.88 E-value=23 Score=31.80 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=27.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhC----CCCeEEe
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESL----GVNVFQS 164 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~----g~~~~~t 164 (440)
+..+|.+.|-. ||||.+..|.+-|... |+++..+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 35789999875 5999999999999877 8887544
No 146
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=42.83 E-value=92 Score=26.64 Aligned_cols=67 Identities=9% Similarity=0.181 Sum_probs=46.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
+.+|-|... +...++++++.+++.. ...+++.|++.+.|... +...++.+.+.+.+...+++.|++-
T Consensus 8 i~~iSD~H~-~~~~~~~~~~~~~~~~--~D~vi~~GDl~~~~~~~-~~~~~~~~~l~~~~~pv~~v~GNHD 74 (228)
T 1uf3_A 8 ILATSNPMG-DLEALEKFVKLAPDTG--ADAIALIGNLMPKAAKS-RDYAAFFRILSEAHLPTAYVPGPQD 74 (228)
T ss_dssp EEEEECCTT-CHHHHHHHHTHHHHHT--CSEEEEESCSSCTTCCH-HHHHHHHHHHGGGCSCEEEECCTTS
T ss_pred EEEEeeccC-CHHHHHHHHHHHhhcC--CCEEEECCCCCCCCCCH-HHHHHHHHHHHhcCCcEEEECCCCC
Confidence 567889543 6778888888776543 46899999988776433 3335566667666667888889754
No 147
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=42.65 E-value=23 Score=32.70 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=18.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHhCCC
Q 013570 134 LVGVTGSVGKSTTKSMIALALESLGV 159 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~ 159 (440)
+.|=+|| |||+++..++..+...+.
T Consensus 72 l~G~~Gt-GKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 72 FTGNPGT-GKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp EEECTTS-SHHHHHHHHHHHHHHTTS
T ss_pred EECCCCC-CHHHHHHHHHHHHHhcCC
Confidence 3444454 999999999999966544
No 148
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=42.52 E-value=23 Score=30.88 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=25.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH-hCCCCeE
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALALE-SLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~-~~g~~~~ 162 (440)
+..+|.|+|. .||||.+.+|+..|. ..|+++.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~ 58 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAY 58 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEE
Confidence 3568899986 689999999999996 5665543
No 149
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=42.49 E-value=19 Score=32.26 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=27.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHh-CCCCeEE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALES-LGVNVFQ 163 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~-~g~~~~~ 163 (440)
+..+|.+.|.. ||||.+..|..-|.. .|+++..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 45689999864 699999999999988 8888765
No 150
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=42.43 E-value=18 Score=30.80 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.2
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.++|.++|. .||||.+.+|+.-|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457888876 58999999999887
No 151
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=41.87 E-value=12 Score=31.51 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=17.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
+..+|.++|. .||||.+.+|+.-|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999997 68999999998776
No 152
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=41.67 E-value=56 Score=31.16 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=26.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCe
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~ 161 (440)
..++|+|+|.. ||||+...|...+...+.++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 37899999986 69999999998887777665
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=41.25 E-value=27 Score=30.32 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=24.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
+..+++|+|.| ||||+...+...+...+.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~ 55 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 35689999986 599999999866655566664
No 154
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=41.25 E-value=19 Score=31.38 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=20.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|+|||.. ||||++.+|+. | |+.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l---g~~~i 32 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L---GINVI 32 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T---TCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c---CCEEE
Confidence 3589999974 89999999976 3 65543
No 155
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=41.19 E-value=18 Score=32.74 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+|+|+|-+ ||||+..+|+..|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999976 6999999999777
No 156
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=40.74 E-value=19 Score=30.60 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+.++|+|+|-+ ||||+..+|...+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999976 6999999988876
No 157
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=40.54 E-value=13 Score=32.79 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=15.6
Q ss_pred EEEEeCCCChHHHHHHHHHHH
Q 013570 134 LVGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL 154 (440)
++|..|| ||||.+..|+.-|
T Consensus 10 l~G~~Gs-GKsT~~~~La~~l 29 (222)
T 1zak_A 10 ISGAPAS-GKGTQCELIKTKY 29 (222)
T ss_dssp EEESTTS-SHHHHHHHHHHHH
T ss_pred EECCCCC-CHHHHHHHHHHHh
Confidence 3444454 9999999999988
No 158
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=39.54 E-value=20 Score=30.80 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=20.5
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHH
Q 013570 129 RFSGVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
..++++|+|+|. .||||.+.+|+.-|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 344678999987 47999999988765
No 159
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=39.48 E-value=19 Score=31.67 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=23.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCeEEec
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQSY 165 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~t~ 165 (440)
.|.+-|- .||||.+.+|..-| ..|+++..+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~~~~ 36 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL-VKDYDVIMTR 36 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TTTSCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HCCCCEEEee
Confidence 4555553 68999999999999 5688876543
No 160
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=38.93 E-value=83 Score=26.66 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCCC--CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 115 LNSLVNMACYARNSRF--SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 115 ~~al~~la~~~~~p~~--~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
..++..+..+...... ..+.+.++|.. |||+++..++..+...+.++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3455555455443111 12578888874 899999999998876676653
No 161
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=38.68 E-value=17 Score=31.23 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=22.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|+++|- .||||.+.+|+.-| .|+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~ 34 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIK 34 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceE
Confidence 467899986 69999999998877 345543
No 162
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=38.46 E-value=27 Score=33.58 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=25.3
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHH--hCCCCeEE
Q 013570 133 VLVGVT---GSVGKSTTKSMIALALE--SLGVNVFQ 163 (440)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~--~~g~~~~~ 163 (440)
++|.|| |-.||||++.-++..|. +.|++|..
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLL 53 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLL 53 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEE
Confidence 445555 78899999999999998 78999853
No 163
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=38.29 E-value=38 Score=35.42 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=28.2
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeEE
Q 013570 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
.+..+|.+||. .||||++..|+..|.+.|+.+..
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~ 85 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 85 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 35678999996 79999999999999878877643
No 164
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=38.14 E-value=39 Score=27.79 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=25.8
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
+...+++.|.+ ||||+..++...+...|.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~ 68 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAA 68 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEE
Confidence 46789999976 799999999999976665554
No 165
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=38.10 E-value=21 Score=32.93 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=21.1
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|+|||. .||||++.+|+. + |+.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~-l---g~~~i 103 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN-L---GAYII 103 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH-H---TCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-C---CCcEE
Confidence 568999997 489999999984 3 65554
No 166
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=37.23 E-value=76 Score=25.53 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=17.3
Q ss_pred EEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 135 VGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
|-++|- .|||+++..|+......+...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~ 55 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEF 55 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCE
Confidence 334443 389999999988764444443
No 167
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=36.86 E-value=26 Score=29.82 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.8
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 013570 134 LVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.|+|+|. .||||.+.+|+.-|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 5777776 57999999999988
No 168
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=35.93 E-value=39 Score=33.97 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=30.1
Q ss_pred CCCCcEEEEeCC------CChHHHHHHHHHHHHhCCCCeEE
Q 013570 129 RFSGVLVGVTGS------VGKSTTKSMIALALESLGVNVFQ 163 (440)
Q Consensus 129 ~~~~~vI~VTGT------nGKTTT~~ml~~iL~~~g~~~~~ 163 (440)
+.+.+.|-||+- -|||||+-=|.+.|...|.++..
T Consensus 40 ~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~ 80 (543)
T 3do6_A 40 HEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIV 80 (543)
T ss_dssp SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEE
Confidence 345789999988 69999999999999999998753
No 169
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=35.77 E-value=36 Score=31.37 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=28.3
Q ss_pred CCcEEEEeC----CCChHHHHHHHHHHHHhCCCCeE
Q 013570 131 SGVLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 131 ~~~vI~VTG----TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|-|-||| +-||.-|++-|..+|++.|++|.
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt 57 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeE
Confidence 378899997 45999999999999999999984
No 170
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=35.44 E-value=24 Score=32.06 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=17.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.+||+||. .||||++.++..-+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 58999996 68999999887653
No 171
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=35.31 E-value=24 Score=33.46 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.1
Q ss_pred CCCCcEEEE----eCCCChHHHHHHHHHHHHhCC
Q 013570 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLG 158 (440)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g 158 (440)
+.+.|||.| .|-.|||-++..|...|+..+
T Consensus 33 ~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~ 66 (315)
T 4ehx_A 33 KLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKR 66 (315)
T ss_dssp CCSSCEEEEEESBSSCCSHHHHHHHHHHHTTTSC
T ss_pred cCCCCEEEECCEEeCCCChHHHHHHHHHHHhhcC
Confidence 456789988 699999999999999996543
No 172
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=35.15 E-value=24 Score=29.98 Aligned_cols=20 Identities=45% Similarity=0.434 Sum_probs=16.7
Q ss_pred cEEEEeCCC--ChHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIAL 152 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~ 152 (440)
.+|+++|.| ||||+..+|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 478899886 79999999975
No 173
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=34.67 E-value=24 Score=29.64 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.3
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+.+|+|-| ||||+...|..+|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999987 5999999999988
No 174
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=34.50 E-value=25 Score=29.36 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
++|.++|- .||||++..|+.-|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 57888886 79999999999887
No 175
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=34.24 E-value=26 Score=33.74 Aligned_cols=29 Identities=38% Similarity=0.298 Sum_probs=22.9
Q ss_pred cEEEEeCCCC--hHHHHHHHHHHHHhC-CCCe
Q 013570 133 VLVGVTGSVG--KSTTKSMIALALESL-GVNV 161 (440)
Q Consensus 133 ~vI~VTGTnG--KTTT~~ml~~iL~~~-g~~~ 161 (440)
.+|+|+|-+| |||+..+|...+... +..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 4899999875 999999998888654 4444
No 176
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=34.13 E-value=30 Score=29.08 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=19.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
..+|+|+|. .||||.+..|+.-|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889987 48999999998877
No 177
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=34.00 E-value=48 Score=33.91 Aligned_cols=31 Identities=39% Similarity=0.475 Sum_probs=24.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+|.+||. .||||++..|+..|...|.++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~ 404 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVT 404 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 467899876 5799999999999877776553
No 178
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=33.89 E-value=28 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+..++++.|-| ||||...+|..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 346799999987 5999999999988
No 179
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=33.57 E-value=34 Score=29.86 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=19.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
...|.++|. .||||.+.+|+.-|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456778776 58999999999988
No 180
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=33.55 E-value=48 Score=29.56 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+..++-+||. .||||...-+..-+...|.++.
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVl 44 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYL 44 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 344679999999 6777766555555556788875
No 181
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=33.49 E-value=38 Score=30.22 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=23.5
Q ss_pred CcEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..++.++ |-.||||++.-|+..|. .|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~ 45 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVA 45 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEE
Confidence 4455555 57899999999999996 888874
No 182
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=33.44 E-value=27 Score=29.24 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=18.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
+.|.|+|. .||||++..|+.-|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45788876 58999999999887
No 183
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=33.43 E-value=13 Score=32.23 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHhCCCCe
Q 013570 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~~ 161 (440)
+|+|.|- .||||.+..|...|...|+++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 3444443 499999999999996656554
No 184
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=33.38 E-value=79 Score=27.94 Aligned_cols=68 Identities=10% Similarity=0.142 Sum_probs=44.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcH-------------------------HHHHHHHHH
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER-------------------------ESHEKILSY 413 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~-------------------------~~~~~l~~~ 413 (440)
+.+|-|... +.++++++++.++.. ....+++.|++.+.|..+. +...++.+.
T Consensus 8 i~~iSDlH~-~~~~~~~~l~~~~~~--~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 84 (260)
T 2yvt_A 8 VLAIKNFKE-RFDLLPKLKGVIAEK--QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFRE 84 (260)
T ss_dssp EEEEECCTT-CGGGHHHHHHHHHHH--CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCC-ChHHHHHHHHHHHhc--CCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHH
Confidence 567888543 567788888887643 3468999999887775421 223344455
Q ss_pred HHHcCCCEEEEEcCch
Q 013570 414 CCDACIDLIGLVGDRV 429 (440)
Q Consensus 414 ~~~~~~d~vi~~G~~~ 429 (440)
+.+.+...+++.|++-
T Consensus 85 l~~~~~pv~~v~GNHD 100 (260)
T 2yvt_A 85 IGELGVKTFVVPGKND 100 (260)
T ss_dssp HHTTCSEEEEECCTTS
T ss_pred HHhcCCcEEEEcCCCC
Confidence 5554556777788754
No 185
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=33.03 E-value=36 Score=27.82 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=19.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
++|.|+|. .||||.+..| +..|+.+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 47888886 4799999988 45676654
No 186
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=32.94 E-value=1.4e+02 Score=28.03 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=50.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 358 ~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
.+.+|-|. =.+-..+.++|+...... ....++.+|++.+.|..+.+-..-+...-..+.-..+++-|++-
T Consensus 61 ri~viGDI-HG~~~~L~~ll~~~g~~~-~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE 130 (315)
T 3h63_A 61 KITVCGDT-HGQFYDLLNIFELNGLPS-ETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHE 130 (315)
T ss_dssp EEEEECCC-TTCHHHHHHHHHHHCCCB-TTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTS
T ss_pred eEEEEecC-CCCHHHHHHHHHHhCCCC-CCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCcc
Confidence 37888894 347888888888775433 44569999999999998877766665554445445666788765
No 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=32.77 E-value=1.1e+02 Score=26.20 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 115 LNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 115 ~~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..++..+..+...+ ..+.+.++|- .||||++..++.-+...+.++.
T Consensus 37 ~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~ 84 (242)
T 3bos_A 37 DELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSF 84 (242)
T ss_dssp HHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 34555555443331 3567888886 5799999999998877766653
No 188
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=32.28 E-value=30 Score=29.04 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=18.4
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+|.++|.. ||||.+.+|+.-|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468888864 7999999999877
No 189
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=32.04 E-value=35 Score=28.53 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=19.2
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.+.|.|+|. .||||.+..|+.-|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 457888886 58999999999887
No 190
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=32.03 E-value=1.7e+02 Score=27.77 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=50.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
+.||-|. =.+-..+.++|+.+.... ...+++.+|++.+.|..+.+-..-+...-..+.-..+++-|++-
T Consensus 66 i~viGDI-HG~~~~L~~ll~~~g~~~-~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE 134 (335)
T 3icf_A 66 ISVCGDT-HGQFYDVLNLFRKFGKVG-PKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHE 134 (335)
T ss_dssp EEEECCC-TTCHHHHHHHHHHHCCCB-TTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTS
T ss_pred EEEEecC-CCCHHHHHHHHHHcCCCC-CCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchh
Confidence 8889994 447889999988875433 34568889999999999877766665554455445666678765
No 191
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=31.84 E-value=30 Score=29.32 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.++|+|+|. .||||.+.+|+.-|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357888886 58999999999988
No 192
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=31.81 E-value=27 Score=29.50 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALA 153 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~i 153 (440)
+..+|+|+|-| ||||+..+|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 35688888864 799999888765
No 193
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=31.75 E-value=32 Score=33.29 Aligned_cols=27 Identities=33% Similarity=0.268 Sum_probs=22.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhC
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESL 157 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~ 157 (440)
+..+|+|+|-+ ||||+..+|...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 35689999976 5999999999998654
No 194
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=31.49 E-value=44 Score=28.61 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=19.8
Q ss_pred CcEEEEeCC--CChHHHH-HHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGS--VGKSTTK-SMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~-~ml~~iL~~~g~~~~ 162 (440)
..++.+||. .||||.. .++.... ..|.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~ 35 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVA 35 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 357888988 5788876 4444444 6777764
No 195
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=31.22 E-value=1.6e+02 Score=27.54 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=51.0
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 356 RSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 356 ~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
..++.|+-|.. .+-..+.++++.....+ ...++.+|++.+.|..+.+-..-+...-..++-..+++-|++-
T Consensus 55 ~~~i~viGDIH-G~~~~L~~ll~~~g~~~--~~~~vfLGD~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE 125 (299)
T 3e7a_A 55 EAPLKICGDIH-GQYYDLLRLFEYGGFPP--ESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 125 (299)
T ss_dssp CSSEEEECBCT-TCHHHHHHHHHHHCSTT--SSCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTS
T ss_pred CCCEEEEecCC-CCHHHHHHHHHHhCCCC--CccEEeCCcccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCch
Confidence 35788999943 47899999998875433 4567889999999998877666555554455445667778764
No 196
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=31.04 E-value=43 Score=33.99 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=22.5
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHh
Q 013570 130 FSGVLVGVTGS--VGKSTTKSMIALALES 156 (440)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~ 156 (440)
.+..+|.+||- .||||+...|+.-|..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34568999996 6999999999999943
No 197
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=30.32 E-value=42 Score=29.39 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=21.0
Q ss_pred CCCCCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 128 SRFSGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 128 p~~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
|..+.++|+|.|-+ ||||+...|...+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45667899999987 5999988887665
No 198
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=30.03 E-value=33 Score=35.29 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=25.1
Q ss_pred CcEEEEe--CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.+++-++ |-.||||++..++..|.+.|++|.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVL 40 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVL 40 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEE
Confidence 3455555 568999999999999988999985
No 199
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=29.91 E-value=27 Score=30.74 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|.|-| ||||+..+|..++
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999966 7999999999877
No 200
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=29.72 E-value=43 Score=29.85 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+|+|.|-| ||||+..+|+.-|
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999987 6999999998777
No 201
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=29.43 E-value=29 Score=32.23 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=15.3
Q ss_pred EEEEeCCCChHHHH-HHHHHHH
Q 013570 134 LVGVTGSVGKSTTK-SMIALAL 154 (440)
Q Consensus 134 vI~VTGTnGKTTT~-~ml~~iL 154 (440)
+|+|| |||||++. ..|..-+
T Consensus 161 ~IaIS-T~Gksp~lA~~ir~~i 181 (274)
T 1kyq_A 161 QILIS-TNGLSPRFGALVRDEI 181 (274)
T ss_dssp EEEEE-ESSSCHHHHHHHHHHH
T ss_pred EEEEE-CCCCCcHHHHHHHHHH
Confidence 89999 99998764 5555555
No 202
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=29.17 E-value=35 Score=28.71 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=18.7
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
..+|.|+|. .||||.+..|+.-|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357778875 68999999999877
No 203
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=29.12 E-value=43 Score=28.02 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=18.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.+.|.++|- .||||++..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456777874 69999999999888
No 204
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=28.93 E-value=1.7e+02 Score=27.44 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 357 ~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.++.+|-|.. .+.+.+.++|+.....+ ...++.+|++.+.|..+.+-..-+...-..++-..+++-|++-.
T Consensus 50 ~~i~viGDIH-G~~~~L~~ll~~~~~~~--~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~ 120 (309)
T 2ie4_C 50 CPVTVCGDVH-GQFHDLMELFRIGGKSP--DTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 120 (309)
T ss_dssp SSEEEECCCT-TCHHHHHHHHHHHCCTT--TSCEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSS
T ss_pred CCEEEEecCC-CCHHHHHHHHHHcCCCC--CCEEEEeCCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCH
Confidence 5788999954 47889999988775433 45578899999999888766555544433444467778887643
No 205
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=28.69 E-value=41 Score=36.42 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=27.3
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHhC-----CCCeE
Q 013570 131 SGVLVGVTGS---VGKSTTKSMIALALESL-----GVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~-----g~~~~ 162 (440)
..+.|-|+|| .|||+++.-|..+|++. |++|.
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~ 72 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLL 72 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEE
Confidence 4678899988 69999999999999888 88874
No 206
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=28.54 E-value=45 Score=32.89 Aligned_cols=30 Identities=37% Similarity=0.266 Sum_probs=22.9
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCe
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~ 161 (440)
..+|+|+|-| |||||...|...+.....++
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I 198 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNI 198 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 4689999977 69999999988884433344
No 207
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=28.15 E-value=38 Score=29.97 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+..+++|.|-| ||||+..+|...+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 456799999988 6999999998887
No 208
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=27.98 E-value=1.6e+02 Score=25.80 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=43.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHh---cccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 359 IKIVNDAYNANPISTRAAIDLLK---DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~---~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
+.+|-|.. .+.++++++++.+. ........+++.|++.+.|..+.+..+.+.+.... ...+++.|++-
T Consensus 4 i~~isD~H-~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~--~~~~~v~GNhD 74 (252)
T 1nnw_A 4 VAVLANIA-GNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKK--ENVKIIRGKYD 74 (252)
T ss_dssp EEEEECCT-TCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHH--SCEEEECCHHH
T ss_pred EEEEeecC-CCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhh--cCeeEEecchH
Confidence 46788954 37888999998886 43102367889999888886554443433333221 35777888754
No 209
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=27.59 E-value=48 Score=26.93 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=53.5
Q ss_pred CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHH
Q 013570 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410 (440)
Q Consensus 331 ~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l 410 (440)
++++++.++..+..+ .+..+.=+..++...++..++.+++.. .+...+++|+..=.+.. .+.+.
T Consensus 41 ~p~e~~v~~a~~~~~------------d~v~lS~~~~~~~~~~~~~i~~l~~~g-~~~i~v~vGG~~~~~~~---~~~~~ 104 (137)
T 1ccw_A 41 SPQELFIKAAIETKA------------DAILVSSLYGQGEIDCKGLRQKCDEAG-LEGILLYVGGNIVVGKQ---HWPDV 104 (137)
T ss_dssp ECHHHHHHHHHHHTC------------SEEEEEECSSTHHHHHTTHHHHHHHTT-CTTCEEEEEESCSSSSC---CHHHH
T ss_pred CCHHHHHHHHHhcCC------------CEEEEEecCcCcHHHHHHHHHHHHhcC-CCCCEEEEECCCcCchH---hhhhh
Confidence 588999888876654 223333334567888999999998754 22344455552100111 23445
Q ss_pred HHHHHHcCCCEEEEEcCchhhhhh
Q 013570 411 LSYCCDACIDLIGLVGDRVVVQCK 434 (440)
Q Consensus 411 ~~~~~~~~~d~vi~~G~~~~~~~~ 434 (440)
.+.+.+.++|.++--|........
T Consensus 105 ~~~~~~~G~d~~~~~g~~~~~~~~ 128 (137)
T 1ccw_A 105 EKRFKDMGYDRVYAPGTPPEVGIA 128 (137)
T ss_dssp HHHHHHTTCSEECCTTCCHHHHHH
T ss_pred HHHHHHCCCCEEECCCCCHHHHHH
Confidence 566777889999988876654433
No 210
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=27.58 E-value=34 Score=35.34 Aligned_cols=33 Identities=12% Similarity=-0.032 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcC
Q 013570 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427 (440)
Q Consensus 388 r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~ 427 (440)
+-|+|+-- +......+.+.+.++++...+.-|.
T Consensus 348 ~diaVL~r-------~~~~~~~l~~~l~~~~Ip~~~~~~~ 380 (647)
T 3lfu_A 348 AECAILYR-------SNAQSRVLEEALLQASMPYRIYGGM 380 (647)
T ss_dssp GGEEEEES-------SGGGHHHHHHHHHHTTCCEEESSSC
T ss_pred cCEEEEEe-------CchhHHHHHHHHHHCCCCEEEeCCC
Confidence 45666643 1223456777777777777655443
No 211
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=27.56 E-value=1.2e+02 Score=26.95 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHH
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
++...+..|-.+.+. ..+...+.+.|. .||||++..|+..|
T Consensus 40 ~~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 40 EFITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CHHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 666666677765554 222336888887 79999999888888
No 212
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=27.38 E-value=1.9e+02 Score=27.32 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=50.2
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCchh
Q 013570 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRVV 430 (440)
Q Consensus 357 ~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~~ 430 (440)
.++.+|-|.. .+.+.+.++|+.+... ....++.+|++.+.|..+.+-..-+...-..++-..+++-|++-.
T Consensus 57 ~~i~viGDIH-G~~~~L~~ll~~~g~~--~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~ 127 (330)
T 1fjm_A 57 APLKICGDIH-GQYYDLLRLFEYGGFP--PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 127 (330)
T ss_dssp SSEEEECBCT-TCHHHHHHHHHHHCST--TSSCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSS
T ss_pred CceEEecCCC-CCHHHHHHHHHHhCCC--CcceEEeCCCcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchH
Confidence 5788999944 4789999999887543 345688899999999888765554444333444467778887653
No 213
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=27.28 E-value=1.9e+02 Score=28.52 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=50.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 358 ~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
.+.+|-|.. .+.+.+.++|+...... ....++.+|++.+.|..+.+-...+...-..++-..+++-|++-
T Consensus 214 ~~~vigDiH-G~~~~l~~~l~~~~~~~-~~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE 283 (477)
T 1wao_1 214 KITVCGDTH-GQFYDLLNIFELNGLPS-ETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHE 283 (477)
T ss_dssp EEEEECBCT-TCHHHHHHHHHHHCCCB-TTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTS
T ss_pred ceEEEeCCC-CCHHHHHHHHHHcCCCC-CcCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCcc
Confidence 377888943 46888888888875433 34568999999999988877665555544445556777889865
No 214
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=27.24 E-value=83 Score=27.92 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=21.9
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..+..+.-+||+ .||||..--+..-+...|.++.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVl 60 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAI 60 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 344678999999 5666554444444446788874
No 215
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=27.08 E-value=85 Score=28.84 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHH----HHcCCCEEEEEcCch
Q 013570 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYC----CDACIDLIGLVGDRV 429 (440)
Q Consensus 369 np~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~----~~~~~d~vi~~G~~~ 429 (440)
+...++++++.+++....-..+++.|++.+.|.. +....+.+.+ .+.++..+++.|++-
T Consensus 49 ~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~l~~~~~~pv~~v~GNHD 111 (330)
T 3ib7_A 49 ADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEP--AAYRKLRGLVEPFAAQLGAELVWVMGNHD 111 (330)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCH--HHHHHHHHHHHHHHHHHTCEEEECCCTTS
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHHHHhhcCCCEEEeCCCCC
Confidence 3788999999987632134688888998877754 2223333333 333567888889764
No 216
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=26.68 E-value=42 Score=30.50 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.++|+++|.. ||||+..+|+..|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578888875 7999999999988
No 217
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=26.51 E-value=69 Score=29.28 Aligned_cols=32 Identities=34% Similarity=0.299 Sum_probs=24.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHhC-CCCeE
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALESL-GVNVF 162 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~-g~~~~ 162 (440)
+..+++|+|-+ ||||....|+..+... |.++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 35689999877 8999999998888654 65663
No 218
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=26.18 E-value=39 Score=30.97 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|.|-| ||||...+|..++
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 35799999999 7999999887776
No 219
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=25.26 E-value=25 Score=34.15 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeE
Q 013570 139 GSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 139 GTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
|-.||||++..++..|.+.|++|.
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vl 34 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVL 34 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeE
Confidence 556899999999999988999984
No 220
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=25.06 E-value=1e+02 Score=27.45 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=47.4
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcc--cCCCcEEEEeeccCCcchHHhhcccc
Q 013570 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILELARMA 207 (440)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~--~~~~~~~VlE~g~~~~g~~~~~~~~~ 207 (440)
.+.+++-|||..|..-=..+..+++ +.|.++....-+ . .......-++ ....++.+++++.+...++.++.+.+
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~-~~G~~V~~~~r~--~-~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRAL-LEGADVVISDYH--E-RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHH-HTTCEEEEEESC--H-HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHH-HCCCEEEEecCC--H-HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence 4567999999877555556666666 778887543221 1 1111111111 22356778888877766555543322
Q ss_pred -----CCcEEEEcCCCh
Q 013570 208 -----RPEIRVVLNVGD 219 (440)
Q Consensus 208 -----~p~vaviTNi~~ 219 (440)
++|+.| -|-+.
T Consensus 96 ~~~~g~id~li-~~Ag~ 111 (266)
T 3o38_A 96 VEKAGRLDVLV-NNAGL 111 (266)
T ss_dssp HHHHSCCCEEE-ECCCC
T ss_pred HHHhCCCcEEE-ECCCc
Confidence 566544 45553
No 221
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=25.06 E-value=1.3e+02 Score=27.63 Aligned_cols=46 Identities=17% Similarity=0.022 Sum_probs=28.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCeE
Q 013570 117 SLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 117 al~~la~~~~~p~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~~ 162 (440)
++..+-.+...|....+.+.++|-. ||||++..+...+...+.++.
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~ 69 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 3333333333433234456677654 799999999998866666654
No 222
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=24.74 E-value=2.3e+02 Score=27.11 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=50.7
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 356 RSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 356 ~~~~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
..++.++-|. =.+-..+.++++..... ....++.+|++.+.|..+.+-..-+...-..+.-..+++-|++-
T Consensus 69 ~~pi~ViGDI-HG~~~dL~~ll~~~g~~--~~~~~vfLGD~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE 139 (357)
T 3ll8_A 69 DAPVTVCGDI-HGQFFDLMKLFEVGGSP--ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHE 139 (357)
T ss_dssp CSSEEEECCC-TTCHHHHHHHHHHHCCT--TTCCEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTS
T ss_pred cccceeeccC-CCCHHHHHHHHHhcCCC--CCcEEEECCCccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchh
Confidence 3578899994 44788888888865432 34568889999999998877666665554455445667788754
No 223
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=24.74 E-value=57 Score=29.31 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=19.6
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+|+|+|-. ||||++.+|+..|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999864 8999999999888
No 224
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=24.70 E-value=45 Score=29.23 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=20.7
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHh
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (440)
..+++|.|-| ||||...+|..+ .-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 5689999998 699999999988 54
No 225
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=24.20 E-value=44 Score=30.45 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|.|-| ||||...+|..++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35789999999 6999999887776
No 226
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=24.05 E-value=1.3e+02 Score=26.42 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHhhcCC-------CCCcEEEEeCC--CChHHHHHHHHHHH
Q 013570 113 NTLNSLVNMACYARNSR-------FSGVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 113 d~~~al~~la~~~~~p~-------~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
+..+.+..+..+...|. ...+-|-++|- .|||+++..++.-+
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 13 EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp HHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56677777766555433 22345778886 67999999998877
No 227
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=24.04 E-value=41 Score=29.17 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=18.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.+|+|+|. .||||++.+|+..|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 47899985 69999999998876
No 228
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=23.99 E-value=53 Score=30.00 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|.|-| ||||...+|..++
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999998 7999988887764
No 229
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=23.83 E-value=38 Score=30.06 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.4
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|.|-| ||||...+|.-++
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5689999998 7999988887766
No 230
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=23.78 E-value=66 Score=27.97 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=46.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcH---H-HHHHHHHHHHHcCCCEEEEEcCch
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER---E-SHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~---~-~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
+.+|-|.. -+.+.++++++.++... ...+++.|++.+.|.... . ...++.+++.+.+...+++.|+.-
T Consensus 28 i~~iSD~H-~~~~~l~~~l~~~~~~~--~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNHD 99 (208)
T 1su1_A 28 LMFASDIH-GSLPATERVLELFAQSG--AQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCD 99 (208)
T ss_dssp EEEECCCT-TBHHHHHHHHHHHHHHT--CSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTGGGEEECCCTTC
T ss_pred EEEEEcCC-CCHHHHHHHHHHHHhcC--CCEEEECCCccccCcccccccccCHHHHHHHHHhcCCceEEEECCCc
Confidence 56788954 36888899988886533 468899999887775311 1 134566677665556778888754
No 231
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=23.63 E-value=52 Score=29.71 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=18.8
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALA 153 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~i 153 (440)
..+++|.|-| ||||...+|..+
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999998 699998888766
No 232
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=23.51 E-value=36 Score=30.11 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=19.4
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHH
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALA 153 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~i 153 (440)
.+..+|+|.|-+ ||||...+|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 456799999987 699988887765
No 233
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=23.36 E-value=46 Score=30.39 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|.|-| ||||...+|..++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35689999998 7999999888776
No 234
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=23.21 E-value=1.7e+02 Score=24.93 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=39.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCEEEEEcCch
Q 013570 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRV 429 (440)
Q Consensus 359 ~~ii~Dsyahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~vi~~G~~~ 429 (440)
+.++-|.. .+..+++++++.++... ...+++.|++.+. +..+.+.+.+...+++.|+.-
T Consensus 28 i~~iSD~H-g~~~~l~~~l~~~~~~~--~D~ii~~GDl~~~---------~~~~~l~~l~~~~~~V~GNhD 86 (190)
T 1s3l_A 28 IGIMSDTH-DHLPNIRKAIEIFNDEN--VETVIHCGDFVSL---------FVIKEFENLNANIIATYGNND 86 (190)
T ss_dssp EEEECCCT-TCHHHHHHHHHHHHHSC--CSEEEECSCCCST---------HHHHHGGGCSSEEEEECCTTC
T ss_pred EEEEeeCC-CCHHHHHHHHHHHhhcC--CCEEEECCCCCCH---------HHHHHHHhcCCCEEEEeCCCc
Confidence 56788965 47888999998886533 4678888996531 345556555456677778754
No 235
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=23.20 E-value=1.3e+02 Score=25.41 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCC--CChHHHHHHHHHHHH
Q 013570 116 NSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALE 155 (440)
Q Consensus 116 ~al~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~ 155 (440)
..+..+..+... ....+.+.|+|- .||||++..++.-+.
T Consensus 30 ~~~~~l~~~l~~-~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 30 HVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHH-TCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555554444 222357888886 479999999988884
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=23.18 E-value=55 Score=29.42 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.5
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH
Q 013570 133 VLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+++|.|-| ||||...+|..++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999998 7999999988877
No 237
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=23.14 E-value=50 Score=28.75 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=20.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHhCCCCeE
Q 013570 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~~~ 162 (440)
..|.++|. .||||.+.+|+.-| |+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l---~~~~i 34 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY---GLAHL 34 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---CCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CceEE
Confidence 45666665 69999999999988 45443
No 238
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=22.99 E-value=1.7e+02 Score=23.36 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=55.7
Q ss_pred CCCceeEEeecCCeEEEEecCCC----CHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCCE
Q 013570 346 VQMRSELLVSRSGIKIVNDAYNA----NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDL 421 (440)
Q Consensus 346 ~~gR~e~~~~~~~~~ii~Dsyah----np~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d~ 421 (440)
..+...+.-..+|+..+ . |-. +++-.+++...+.++. .++...||.+|...+.-+.+-++.+.+.. .++.
T Consensus 8 ~~~~~~~~~~~dGIl~~-~-~~~~~~i~~e~A~~~~~~~~~l~-~~~~~~vL~D~r~~~~~s~~AR~~~~~~~---~~~a 81 (124)
T 3bl4_A 8 VGTEAGLTLGGDGILRL-T-WPRGAAITAADAERAMLRVNQLC-GDDRHPMLVDMATTADVSRGARAVFGRPC---QASR 81 (124)
T ss_dssp CCCCTTEEECTTSCEEE-E-CSSSSCCCHHHHHHHHHHHHHHH-TTCCEEEEEECCSSTHHHHHHHHHHCCCC---CEEE
T ss_pred CCCeeeEEEcCCCEEEE-E-EcCCCccCHHHHHHHHHHHHHHh-CCCceEEEEEcccccCCCHHHHHHHhCcc---ceeE
Confidence 33433433333565443 3 222 8899999888888776 55679999999988878888888887744 5899
Q ss_pred EEEEcCchh
Q 013570 422 IGLVGDRVV 430 (440)
Q Consensus 422 vi~~G~~~~ 430 (440)
+-++|....
T Consensus 82 ~Al~g~s~~ 90 (124)
T 3bl4_A 82 IALLGSSPV 90 (124)
T ss_dssp EEEECSSGG
T ss_pred EEEEcCCHH
Confidence 999998764
No 239
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=22.82 E-value=1.8e+02 Score=25.69 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=44.7
Q ss_pred CCCcEEEEeCCCCh-HHHHHHHHHHHHhCCCCeEEecCcCCCCcc-hhhHHhcccCCCcEEEEeeccCCcchHHhhcccc
Q 013570 130 FSGVLVGVTGSVGK-STTKSMIALALESLGVNVFQSYGNWNNRVG-VALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207 (440)
Q Consensus 130 ~~~~vI~VTGTnGK-TTT~~ml~~iL~~~g~~~~~t~g~~n~~~g-~p~~l~~~~~~~~~~VlE~g~~~~g~~~~~~~~~ 207 (440)
.+.+++-|||..|- .-=..+..+++ +.|.++....-+ .... ....+.......++.++.++.+...++.++.+.+
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~-~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLH-EAGARLIFTYAG--ERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESS--GGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEecCc--hHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 45679999998873 34444445555 789887543221 1110 0111111112225666777767766665544322
Q ss_pred -----CCcEEEEcCCCh
Q 013570 208 -----RPEIRVVLNVGD 219 (440)
Q Consensus 208 -----~p~vaviTNi~~ 219 (440)
++|+ +|-|.+.
T Consensus 82 ~~~~g~id~-li~~Ag~ 97 (266)
T 3oig_A 82 KEQVGVIHG-IAHCIAF 97 (266)
T ss_dssp HHHHSCCCE-EEECCCC
T ss_pred HHHhCCeeE-EEEcccc
Confidence 5665 4446554
No 240
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.79 E-value=59 Score=25.86 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=37.0
Q ss_pred eEEEEecCCCC--HH-HHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHHHHHHcCCC
Q 013570 359 IKIVNDAYNAN--PI-STRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420 (440)
Q Consensus 359 ~~ii~Dsyahn--p~-s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~~~~~~~~d 420 (440)
+.+..=+|+.. |+ .++..++.+.... .++++++||. .|.......+.+.+.+.+.++.
T Consensus 49 iiig~pty~~g~~p~~~~~~fl~~l~~~l-~~k~~~~f~t---~g~~~~~a~~~l~~~l~~~G~~ 109 (138)
T 5nul_A 49 LILGCSAMTDEVLEESEFEPFIEEISTKI-SGKKVALFGS---YGWGDGKWMRDFEERMNGYGCV 109 (138)
T ss_dssp EEEEECCBTTTBCCTTTHHHHHHHHGGGC-TTCEEEEEEE---ESSSCSHHHHHHHHHHHHTTCE
T ss_pred EEEEcCccCCCCCChHHHHHHHHHHHhhc-CCCEEEEEEe---cCCCCChHHHHHHHHHHHCCCE
Confidence 34444445553 65 7999999987643 5889999987 3332234456677777766544
No 241
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.72 E-value=1.8e+02 Score=26.68 Aligned_cols=83 Identities=8% Similarity=-0.079 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCCCceeEEeecCCeEEEEec-CCCCHHHHHHHHHHHhcccCCCcEEEEEcCCCCCChhcHHHHHHHHH
Q 013570 334 AQVGISLSNFSPVQMRSELLVSRSGIKIVNDA-YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILS 412 (440)
Q Consensus 334 ~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Ds-yahnp~s~~~al~~l~~~~~~~r~i~VlG~m~e~G~~~~~~~~~l~~ 412 (440)
+.....|++...-.+|..+ .+++|+ .+.++..+..+.+.+++. +=.+-|+|- . .++...++-+++.+
T Consensus 92 ~~A~~aLk~~~~k~~~~rI-------Ilf~ds~~~~~~~~l~~lak~lkk~---gI~v~vIgF-G-~~~~n~~kLe~l~~ 159 (268)
T 4b4t_W 92 QIAQLTLKHRQNKVQHQRI-------VAFVCSPISDSRDELIRLAKTLKKN---NVAVDIINF-G-EIEQNTELLDEFIA 159 (268)
T ss_dssp HHHHHHHHTCSCTTSEEEE-------EEEECSCCSSCHHHHHHHHHHHHHH---TEEEEEEEE-S-SCCSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCceEE-------EEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEEe-C-CCccchHHHHHHHH
Confidence 3444555555543333322 334432 445677777777776652 223333331 0 12334455566666
Q ss_pred HHHH--cCCCEEEEEcCc
Q 013570 413 YCCD--ACIDLIGLVGDR 428 (440)
Q Consensus 413 ~~~~--~~~d~vi~~G~~ 428 (440)
..+. ..-.+++.+-+.
T Consensus 160 ~~Ng~~~~~s~~v~v~~g 177 (268)
T 4b4t_W 160 AVNNPQEETSHLLTVTPG 177 (268)
T ss_dssp HHCSSTTTSCEEEEECCC
T ss_pred HhcCCCCCceeEEEeCCC
Confidence 6653 234566666443
No 242
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=22.65 E-value=67 Score=30.15 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=21.5
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
.+..+++|.|-| ||||...+|..++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 346799999976 5999999999998
No 243
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.63 E-value=50 Score=30.05 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|.|-| ||||...+|..++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999998 7999998887776
No 244
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.54 E-value=47 Score=29.76 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=19.6
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|.|-| ||||...+|..++
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999998 6999988887766
No 245
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=22.41 E-value=36 Score=31.97 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=18.1
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
++++++|||-+ ||||+...|....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999987 5998877766543
No 246
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=22.35 E-value=48 Score=30.06 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|.|-| ||||...+|..++
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999998 7999999888777
No 247
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=22.15 E-value=48 Score=30.06 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|.|-| ||||...+|..++
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999998 6999999988777
No 248
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=22.13 E-value=75 Score=27.93 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.1
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 013570 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (440)
...|.++|. .||||.+.+|+.-|
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456777776 68999999999988
No 249
>2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: d.3.1.19
Probab=22.11 E-value=25 Score=30.72 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=21.1
Q ss_pred HHHHH-HhhcCCCCC-cEEEEeCCCChHHHH
Q 013570 119 VNMAC-YARNSRFSG-VLVGVTGSVGKSTTK 147 (440)
Q Consensus 119 ~~la~-~~~~p~~~~-~vI~VTGTnGKTTT~ 147 (440)
..+|. ||++|.+++ +.|++++.+|+.++.
T Consensus 166 ~~v~~~Wf~k~Pk~m~~si~~~~~~g~~~~i 196 (207)
T 2hly_A 166 ASVAANWFRKSPKQMAASLSVTDRDGKARTV 196 (207)
T ss_dssp HHHHHHHCCCTTSCCCSEEEEECTTSCEEEE
T ss_pred HHHHHHHhcCCchhCCCcEEeecCCCCeeEe
Confidence 34554 888866664 579999999996653
No 250
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=21.79 E-value=64 Score=28.99 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=22.2
Q ss_pred EEeCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 136 GVTGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 136 ~VTGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
+=-|=.||||++.-+++.|.+.|++|.
T Consensus 12 ~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 12 GAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 334778999998888888888999874
No 251
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=21.69 E-value=88 Score=31.83 Aligned_cols=31 Identities=42% Similarity=0.489 Sum_probs=27.2
Q ss_pred CcEEEEeC----CCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTG----TnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.|-|-||| +-||.-|++-|..+|++.|++|.
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~ 37 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVT 37 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 46788888 55999999999999999999984
No 252
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=21.63 E-value=1.9e+02 Score=23.81 Aligned_cols=44 Identities=16% Similarity=0.026 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEeCCCChHHHHHHHHHHH
Q 013570 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (440)
Q Consensus 100 ~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL 154 (440)
++|++.|+ +- .+|+.+.+. ....-+++|| ..|.+-....+..+.
T Consensus 93 ~VP~~~v~-----sk----~eLG~a~Gk-~~~vs~vaI~-~~~~s~i~~~~~~~~ 136 (144)
T 2jnb_A 93 NVPYVFVR-----SK----QALGRACGV-SRPVIACSVT-IKEGSQLKQQIQSIQ 136 (144)
T ss_dssp CCCCEEES-----CS----HHHHHHHTC-SSCCSEEEEE-CCTTCTTHHHHHHHH
T ss_pred CCCEEEEC-----CH----HHHHHHhCC-CCceEEEEEE-eCCcHHHHHHHHHHH
Confidence 79998887 43 356666555 4445579999 566666777766665
No 253
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=21.39 E-value=21 Score=35.85 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCC--ChHHHHHHHHHHHHhCCC
Q 013570 113 NTLNSLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLGV 159 (440)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~ 159 (440)
|+...+..+.-. -.+..+++|.|-| ||||...+|..++...+.
T Consensus 123 nl~~~y~~vsl~----i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 123 NLHFMLEKIRMS----NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHHHHHHHHH----SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred hhhehhhcCceE----eCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 666555533321 2346789999987 799999999999865444
No 254
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=21.24 E-value=77 Score=27.43 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
..+..|+|-| ||||....|..+|-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4588899987 89999999999994
No 255
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=21.23 E-value=95 Score=27.64 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=45.5
Q ss_pred CCCCcEEEEeCCCC-hHHHHHHHHHHHHhCCCCeEEecCcCCCCcchhhHHhcc--cCCCcEEEEeeccCCcchHHhhcc
Q 013570 129 RFSGVLVGVTGSVG-KSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILELAR 205 (440)
Q Consensus 129 ~~~~~vI~VTGTnG-KTTT~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~--~~~~~~~VlE~g~~~~g~~~~~~~ 205 (440)
..+.+++-|||..| ..-=..+..+++ +.|.++.....+. .. .....+.++ ..+.++.+++++.+...++.++.+
T Consensus 17 ~l~~k~vlITGas~~~giG~~~a~~l~-~~G~~v~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 93 (267)
T 3gdg_A 17 SLKGKVVVVTGASGPKGMGIEAARGCA-EMGAAVAITYASR-AQ-GAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVK 93 (267)
T ss_dssp CCTTCEEEETTCCSSSSHHHHHHHHHH-HTSCEEEECBSSS-SS-HHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCChHHHHHHHHH-HCCCeEEEEeCCc-ch-hHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHH
Confidence 34568999999884 233334455555 7888875433221 11 101111111 124567777777777655555433
Q ss_pred cc-----CCcEEEEcCCCh
Q 013570 206 MA-----RPEIRVVLNVGD 219 (440)
Q Consensus 206 ~~-----~p~vaviTNi~~ 219 (440)
-+ ++|+. |-|-+.
T Consensus 94 ~~~~~~g~id~l-i~nAg~ 111 (267)
T 3gdg_A 94 DVVADFGQIDAF-IANAGA 111 (267)
T ss_dssp HHHHHTSCCSEE-EECCCC
T ss_pred HHHHHcCCCCEE-EECCCc
Confidence 22 56664 445554
No 256
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=21.02 E-value=95 Score=25.76 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=15.2
Q ss_pred CCCCcEEEEeCC--CChHHHHHHH
Q 013570 129 RFSGVLVGVTGS--VGKSTTKSMI 150 (440)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml 150 (440)
..+...|+|.|. .||||....+
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 344567888886 8999876544
No 257
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=20.96 E-value=62 Score=29.65 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|.|-| ||||...+|.-++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999998 6999999888777
No 258
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=20.89 E-value=53 Score=30.27 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|.|-| ||||...+|.-++
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35689999999 6999999888777
No 259
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=20.80 E-value=54 Score=29.39 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (440)
+..+++|.|-| ||||...+|..+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35689999998 69999999888773
No 260
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=20.72 E-value=49 Score=30.27 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
..+++|.|-| ||||...+|..++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999 6999999887765
No 261
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=20.64 E-value=1.1e+02 Score=27.69 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=23.2
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHhCCCCe
Q 013570 130 FSGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~ 161 (440)
.....+.++|-. |||+++..++..+...+...
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 334468888875 79999999999995544433
No 262
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=20.44 E-value=71 Score=27.44 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=16.9
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 013570 134 LVGVTGS--VGKSTTKSMIALAL 154 (440)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (440)
.|+|+|- .||||.+.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 4677874 58999999998777
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=20.43 E-value=64 Score=26.55 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=15.9
Q ss_pred cEEEEeCC--CChHHHHHHHHH
Q 013570 133 VLVGVTGS--VGKSTTKSMIAL 152 (440)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~ 152 (440)
++|.|+|. .||||.+..|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 36777776 589999998877
No 264
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=20.38 E-value=66 Score=28.73 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=19.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
+..+++|.|-| ||||...+|..++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999998 6999888877665
No 265
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=20.20 E-value=57 Score=31.40 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=21.0
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHhCCCCeE
Q 013570 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (440)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~ 162 (440)
.-++|-|| .||||+..++...+...|.++.
T Consensus 38 ~~i~G~~G-~GKs~~~~~~~~~~~~~~~~~~ 67 (392)
T 4ag6_A 38 WTILAKPG-AGKSFTAKMLLLREYMQGSRVI 67 (392)
T ss_dssp EEEECCTT-SSHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEcCCC-CCHHHHHHHHHHHHHHCCCEEE
Confidence 34556666 5899998887776667777663
No 266
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=20.17 E-value=49 Score=33.54 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=20.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHhCCCCe
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~~ 161 (440)
...|+|+|-+ |||||..+|..++ ....+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i-~~~~gi 290 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI-PPDAKV 290 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS-CTTCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC-CCCCCE
Confidence 3457888765 8999999988877 333343
No 267
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=20.07 E-value=57 Score=31.14 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.4
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 013570 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (440)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (440)
...++|.|.| ||||...+|..++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999976 5999999999887
Done!