BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013571
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/400 (51%), Positives = 281/400 (70%), Gaps = 5/400 (1%)
Query: 34 SEQLSSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYT 93
+E S + +LL+ A+ PE F+WM +IRR+IHENPELG+EE ETS+L+RSEL+ +GI+Y
Sbjct: 7 AEDTSQIQTKLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYR 66
Query: 94 WPVAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILL 153
+PVA TG++ +G+G P+ LRA+MDALP+QE VEWEHKSK GKMH CGHD H T+LL
Sbjct: 67 YPVAITGVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLL 126
Query: 154 GAARLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTV 213
GAA++L L+GTV L+FQP EEG GA M +EGA+ + +FGIH+S +P G
Sbjct: 127 GAAKILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKA 186
Query: 214 GSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARV 273
SR G LAG+G F AVI GKGGHAA+PQ T DPV+AAS +L+LQ +VSRETDPL+++V
Sbjct: 187 ASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKV 246
Query: 274 VTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFL 333
VTV ++ G A N+IP+ + GGT R+ T G L+QR+KEVI QAAVH+C+A+++
Sbjct: 247 VTVSKVNGGNAFNVIPDSITIGGTLRAFT--GFTQLQQRVKEVITKQAAVHRCNASVNLT 304
Query: 334 EEKMRHYPATVNDEKMYEHGKRVGASMVG-EPNVHLTPVEMGAEDFSFYTQRMPAAHFYV 392
P TVN++ +Y+ K+V ++G E V PV MG+EDFS++ + +P +
Sbjct: 305 PNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPV-MGSEDFSYFAETIPGHFSLL 363
Query: 393 GTRNETLKPFIRLHSPYLVVDEDALPIGAALHAAVAISYL 432
G ++ET + HSP ++ED LP GAA+HA++A+ YL
Sbjct: 364 GMQDET-NGYASSHSPLYRINEDVLPYGAAIHASMAVQYL 402
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 141/406 (34%), Positives = 210/406 (51%), Gaps = 17/406 (4%)
Query: 33 GSEQLSSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIE- 91
G+E L + D A F + RR +HE+PEL F+E ET++ +R L+ IE
Sbjct: 14 GTENLYFQSNAXADKA----FHTRLINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEI 69
Query: 92 YTWPVAKTGIVASV-GSGGEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTT 150
P KTG++A + G P +RA++DALP+QE SK +G H CGHD HT
Sbjct: 70 LDVPQLKTGVIAEIKGREDGPVIAIRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTA 129
Query: 151 ILLGAARLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPT 210
++G A LL R LKGTV+ +FQP EE GA +++ G ++ +FG H P LP
Sbjct: 130 SIIGTAXLLNQRRAELKGTVRFIFQPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPV 189
Query: 211 GTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLE 270
GT+G + GPL A RF VIKGKGGHA++P ++ DP+ AA I LQ +VSR L+
Sbjct: 190 GTIGVKEGPLXASVDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQ 249
Query: 271 ARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVIEMQAAVHQCSATI 330
VV++ + AG + N+IP+ GT R+ E + + + V E AA + A
Sbjct: 250 NAVVSITRVQAGTSWNVIPDQAEXEGTVRTFQKEARQAVPEHXRRVAEGIAAGYGAQA-- 307
Query: 331 DFLEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHF 390
E K Y +V ++ + + A+ +G VH G EDF+ Y +++P
Sbjct: 308 ---EFKWFPYLPSVQNDGTFLNAASEAAARLGYQTVHAEQ-SPGGEDFALYQEKIPGFFV 363
Query: 391 YVGTRNETLKPFIRLHSPYLVVDEDALPIGAALHAAVAISYLDNLE 436
+ GT H P +DE+AL + + A +A+ L+ ++
Sbjct: 364 WXGTNGTE-----EWHHPAFTLDEEALTVASQYFAELAVIVLETIK 404
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 192/395 (48%), Gaps = 9/395 (2%)
Query: 40 LTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKT 99
+ ++L+++ + E M IRR +H++PEL F E ET++ + +E V
Sbjct: 1 MNQQLIETLKSKE--GKMIEIRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPR 58
Query: 100 GIVASVGSGGE-PWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARL 158
GI ++ SG +RA+ DALP+ E S+N G MH CGHD HT +L A
Sbjct: 59 GIKVTIDSGKPGKTLAIRADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAET 118
Query: 159 LKHRMDRLKGTVKLVFQPGEE-GYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRP 217
L D G V ++ QP EE GGA MI+ G +D + G+H+ + TG V RP
Sbjct: 119 LAEMKDSFTGKVVVIHQPAEEVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRP 178
Query: 218 GPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVG 277
G + G F ++GKGGH + P D ++A S+ + LQ +VSR P E VVT+G
Sbjct: 179 GYVQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIG 238
Query: 278 FIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFLEEKM 337
D N+I ++V G R LT +E+ IK + + ++ + T+++ ++
Sbjct: 239 SFDGKGQFNVIKDVVEIEGDVRGLTDATKATIEKEIKRLSKGLEDMYGVTCTLEYNDD-- 296
Query: 338 RHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYVGTRNE 397
YPA ND + E+ + + V + + +EDF++Y + P+A Y G E
Sbjct: 297 --YPALYNDPEFTEYVAKTLKEANLDFGVEMCEPQPPSEDFAYYAKERPSAFIYTGAAVE 354
Query: 398 TLKPFIRLHSPYLVVDEDALPIGAALHAAVAISYL 432
+ + H P + E +L I A V + YL
Sbjct: 355 NGEIYPH-HHPKFNISEKSLLISAEAVGTVVLDYL 388
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 136/341 (39%), Gaps = 61/341 (17%)
Query: 34 SEQLSSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYT 93
S QL R+L P +W RR H + E G+ E+ T+ V LD LG +
Sbjct: 2 SLQLDEYLRQLA-----PSXTQW----RRDFHLHAESGWLEFRTASKVADILDGLGYQLA 52
Query: 94 W-------------PVAKT--------------------------GIVASVGSGGE-PWF 113
P +T G+VA++ +G P
Sbjct: 53 LGRDVIDADSRXGLPDEETLARAFERAREQGAPERWLPAFEGGFAGVVATLDTGRPGPTL 112
Query: 114 GLRAEMDALPLQEMVEWEHK-------SKNNGKMHGCGHDVHTTILLGAARLLKHRMDRL 166
R + DAL L E + H+ S N G H CGHD HT I LG A +LK +L
Sbjct: 113 AFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTAIGLGLAHVLKQYAAQL 172
Query: 167 KGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGR 226
G +KL+FQP EEG GA + G VD IHI +P GTV G + +
Sbjct: 173 NGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPAGTVVC-GGDNFXATTK 231
Query: 227 FTAVIKGKGGHA-AMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAG 285
F G HA P+D R+ +LAA+ A L L I A V VG AG
Sbjct: 232 FDVQFSGVAAHAGGKPEDGRNALLAAAQAALGLHAIPPHSAG---ASRVNVGVXQAGTGR 288
Query: 286 NIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVIEMQAAVHQC 326
N++P R + Y+ +R + V+ AA ++
Sbjct: 289 NVVPSSALLKVETRGESEAINQYVFERAQHVVAGAAAXYEA 329
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 162/391 (41%), Gaps = 46/391 (11%)
Query: 60 IRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVA--KTGIVASVGSGGE-PWFGLR 116
I RIHE PELG EE S+ + L E +A TG +A+ SG + P G
Sbjct: 21 ISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFIATYDSGLDGPAIGFL 80
Query: 117 AEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQP 176
AE DALP G H CGH++ T + A LK +D++ G V ++ P
Sbjct: 81 AEYDALP--------------GLGHACGHNIIGTASVLGAIGLKQVIDQIGGKVVVLGCP 126
Query: 177 ----GEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPT-GTVGSRPGPLLAGSGRFTAVI 231
GE G A Y +K G +D+ IH P T T+ + +L
Sbjct: 127 AEEGGENGSAKASY-VKAGVIDQIDIALXIH--PGNETYKTIDTLAVDVL------DVKF 177
Query: 232 KGKGGHAAMPQDTRDPVLAASFAILTLQHIVS--RETDPLEARVVTVGFIDAGQAGNIIP 289
GK HA+ + D L A A ++ + V+ R+ + RV V +D G+A NIIP
Sbjct: 178 YGKSAHAS---ENADEALNALDAXISYFNGVAQLRQHIKKDQRVHGV-ILDGGKAANIIP 233
Query: 290 EIVRFGGTFRSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFLEEKMRHYPATVN-DEK 348
+ R+ T + L L +++ ++ A C ++ + + T D+
Sbjct: 234 DYTHARFYTRAXTRKELDILTEKVNQIARGAAIQTGCDYEFGPIQNGVNEFIKTPKLDDL 293
Query: 349 MYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAA--HFYVGTRNETLKPFIRLH 406
++ + VG +++ + G+ D + +P H +G+RN
Sbjct: 294 FAKYAEEVGEAVIDD------DFGYGSTDTGNVSHVVPTIHPHIKIGSRNLVGHTHRFRE 347
Query: 407 SPYLVVDEDALPIGAALHAAVAISYLDNLEV 437
+ V ++AL GA + A + + N +V
Sbjct: 348 AAASVHGDEALIKGAKIXALXGLELITNQDV 378
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 224 SGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL-QHIVSRETDPLEARVVTVGFIDAG 282
SG T +KGK GH A P +PV + A+L L Q + + + I+ G
Sbjct: 186 SGNLT--VKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGG 243
Query: 283 Q-AGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVIE 318
A N+IP + FR T L+QR+ +++
Sbjct: 244 TGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILD 280
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 299 RSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFLEEK 336
++ TTE +LY RI ++ A VH+ +AT+DF+E++
Sbjct: 25 KTTTTERILYYTGRIHKI----AEVHEGAATMDFMEQE 58
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 299 RSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFLEEK 336
++ TTE +LY RI ++ E VH+ +AT+DF+E++
Sbjct: 25 KTTTTERILYYTGRIHKIGE----VHEGAATMDFMEQE 58
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 299 RSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFLEEK 336
++ TTE +LY RI ++ E VH+ +AT+DF+E++
Sbjct: 25 KTTTTERILYYTGRIHKIGE----VHEGAATMDFMEQE 58
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 299 RSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFLEEK 336
++ TTE +LY RI ++ E VH+ +AT+DF+E++
Sbjct: 25 KTTTTERILYYTGRIHKIGE----VHEGAATMDFMEQE 58
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 299 RSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFLEEK 336
++ TTE +LY RI ++ E VH+ +AT+DF+E++
Sbjct: 25 KTTTTERILYYTGRIHKIGE----VHEGAATMDFMEQE 58
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 299 RSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFLEEK 336
++ TTE +LY RI ++ E VH+ +AT+DF+E++
Sbjct: 25 KTTTTERILYYTGRIHKIGE----VHEGAATMDFMEQE 58
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 299 RSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFLEEK 336
++ TTE +LY RI ++ E VH+ +AT+DF+E++
Sbjct: 25 KTTTTERILYYTGRIHKIGE----VHEGAATMDFMEQE 58
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 299 RSLTTEGLLYLEQRIKEVIEMQAAVHQCSATIDFLEEK 336
++ TTE +LY RI ++ E VH+ +AT+DF+E++
Sbjct: 25 KTTTTERILYYTGRIHKIGE----VHEGAATMDFMEQE 58
>pdb|2CH7|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A
Bacterial Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 28 KETQSGSEQLSSLTRELLDSAREPEFF 54
+ET +GSE++SS T+ + DSA++ F
Sbjct: 54 QETTAGSEEISSATKNIADSAQQAASF 80
>pdb|2CH7|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of A
Bacterial Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 28 KETQSGSEQLSSLTRELLDSAREPEFF 54
+ET +GSE++SS T+ + DSA++ F
Sbjct: 54 QETTAGSEEISSATKNIADSAQQAASF 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,164,951
Number of Sequences: 62578
Number of extensions: 574196
Number of successful extensions: 1244
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1226
Number of HSP's gapped (non-prelim): 18
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)