BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013572
         (440 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YAC|A Chain A, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
           Product From Escherichia Coli Reveals An Octameric
           Hydrolase Of Unknown Specificity
 pdb|1YAC|B Chain B, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
           Product From Escherichia Coli Reveals An Octameric
           Hydrolase Of Unknown Specificity
          Length = 208

 Score = 32.3 bits (72), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 231 DEDSIAVQIVVDSSSRMLSIVAGIRGDKGDSRVLKSSTLYKDIEEKKLLNSSPICVNGVA 290
           D++  AV ++VD  + +LS+V  I  DK  + VL    L K      +L +S        
Sbjct: 9   DKNDAAV-LLVDHQAGLLSLVRDIEPDKFKNNVLALGDLAKYFNLPTILTTSAET----- 62

Query: 291 VDQYLIGDGGYPLLPWLMVPFVDANPGSSEENFNAAHNLMRVPALKAIASLKNWGVLSRP 350
                 G  G PL+P L   F DA   +   N NA  N   V A+KA    K   +++  
Sbjct: 63  ------GPNG-PLVPELKAQFPDAPYIARPGNINAWDNEDFVKAVKATG--KKQLIIAGV 113

Query: 351 IDEDFKTAVALIGACSILHN-ALLMREDFSGLFEELGDYSLHDESSQ 396
           + E     VA     +I     + +  D SG F E+  +S  D  SQ
Sbjct: 114 VTE---VCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQ 157


>pdb|3IPK|A Chain A, Crystal Structure Of A3vp1 Of AgiII OF STREPTOCOCCUS
           MUTANS
 pdb|3IPK|B Chain B, Crystal Structure Of A3vp1 Of AgiII OF STREPTOCOCCUS
           MUTANS
 pdb|3IOX|A Chain A, Crystal Structure Of A3vp1 Of AgiII OF STREPTOCOCCUS
           MUTANS
          Length = 497

 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 349 RPIDEDFKTAVALIGACSILHNALLMREDFSGLFEELGDYSLHDESSQYYSDASL 403
           +PI+  F  A+  + + +  HN++ M +D+SG F ++   S+ +++   Y+  +L
Sbjct: 299 KPIN--FDNALLSVASLNREHNSIEMAKDYSGKFVKISGSSIGEKNGMIYATDTL 351


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,772,135
Number of Sequences: 62578
Number of extensions: 468964
Number of successful extensions: 1115
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1114
Number of HSP's gapped (non-prelim): 5
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)