BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013572
(440 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
Length = 349
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 29/251 (11%)
Query: 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPEE 192
+S D+++ L +GS S++ ++++ CV + + L ++ F E
Sbjct: 67 ISPDVQILAALGFYTSGSFQSKMGDAIGISQASMSRCVSNVTKALIEKAPEFIGFTRDEA 126
Query: 193 LGLISK-SFEELTGLPNCCGVIDCTRFKIIKIDGSNSS----KDEDSIAVQIVVDSSSRM 247
K F + G+PN GV+DC I + +SS K SI Q+V D+ +
Sbjct: 127 TKQQFKDEFYRIAGIPNVTGVVDCAHIAIKAPNADDSSYVNKKGFHSINCQLVCDARGLL 186
Query: 248 LSIVAGIRGDKGDSRVLKSSTLYKDIEEKKLLNSSPICVNGVAVDQYLIGDGGYPLLPWL 307
LS G D V K S + K EE++ + +L+GD YPL WL
Sbjct: 187 LSAETHWPGSLTDRAVFKQSNVAKLFEEQENDDEG-----------WLLGDNRYPLKKWL 235
Query: 308 MVPFVDANPGSSEENFNAAHNLMRVPALKAIASLKNW--------GVLSRPIDEDFKTAV 359
M P V + ++ +N AH + +++ G L ++
Sbjct: 236 MTP-VQSPESPADYRYNLAHTTTHEIVDRTFRAIQTRFRCLDGAKGYLQYSPEK----CS 290
Query: 360 ALIGACSILHN 370
+I AC +LHN
Sbjct: 291 HIIQACCVLHN 301
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1
Length = 347
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 101/256 (39%), Gaps = 28/256 (10%)
Query: 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPEE 192
+S + ++ L +GS + + ++++ CV + L +++FP E
Sbjct: 67 ISPETQIMAALGFYTSGSFQTRMGDTIGISQASMSRCVTNVTEALVERASQFISFPRDER 126
Query: 193 -LGLISKSFEELTGLPNCCGVIDCTRFKIIKIDGSN----SSKDEDSIAVQIVVDSSSRM 247
+ + F L G+P GV+DCT+ I + + +S+ S+ +V D+ +
Sbjct: 127 SVQGLKDEFYNLAGVPGVLGVVDCTQVNIKAPNSEDLSYVNSRGLHSLNCLLVCDARGSL 186
Query: 248 LSIVAGIRGDKGDSRVLKSSTLYKDIEEKKLLNSSPICVNGVAVDQYLIGDGGYPLLPWL 307
L G D+ VL S L E K + +L+ D + L PWL
Sbjct: 187 LWAETSRLGSMQDNAVLHQSELSGLFETK------------MHKQGWLLADNAFILRPWL 234
Query: 308 MVPFVDANPGSSEENFNAAHNLMRVPALKAIASLKNWGVLSRPIDEDFKT-------AVA 360
M P V S+ +N AH + SL+ + R +D T +
Sbjct: 235 MTP-VQIPESPSDYRYNMAHTATHSVMERTQRSLR---LRFRCLDGSRATLQYSPEKSAQ 290
Query: 361 LIGACSILHNALLMRE 376
++ AC ILHN L +
Sbjct: 291 IVLACCILHNIALQHD 306
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
Length = 349
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 99/252 (39%), Gaps = 32/252 (12%)
Query: 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPE- 191
+S + ++ L +GS + + ++++ CV + L ++ FP E
Sbjct: 67 ISPETQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIRFPADEA 126
Query: 192 ELGLISKSFEELTGLPNCCGVIDCTRFKIIKIDGSNSS----KDEDSIAVQIVVDSSSRM 247
+ + F L G+P GV+DC I + + S K S+ +V D +
Sbjct: 127 SIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGTL 186
Query: 248 LSIVAGIRGDKGDSRVLKSSTLYKDIEEKKLLNSSPICVNGVAVDQYLIGDGGYPLLPWL 307
+++ G D VL+ S+L E G+ D +L+GD + L WL
Sbjct: 187 MTVETNWPGSLQDCAVLQQSSLSSQFEA------------GMHKDSWLLGDSSFFLRTWL 234
Query: 308 MVPF-VDANPGSSEENFNAAHNLMRVPALKAIASL--------KNWGVLSRPIDEDFKTA 358
M P + P +E +N AH+ K +L + G L ++ +
Sbjct: 235 MTPLHIPETP--AEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEK----S 288
Query: 359 VALIGACSILHN 370
+I AC +LHN
Sbjct: 289 SHIILACCVLHN 300
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1
Length = 349
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 20/202 (9%)
Query: 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPE- 191
+S + ++ L +GS + + ++++ CV + L ++ FP E
Sbjct: 67 ISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPADEA 126
Query: 192 ELGLISKSFEELTGLPNCCGVIDCTRFKIIKIDGSNSS----KDEDSIAVQIVVDSSSRM 247
+ + F L G+P GV+DC I + + S K S+ +V D +
Sbjct: 127 SVQALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGAL 186
Query: 248 LSIVAGIRGDKGDSRVLKSSTLYKDIEEKKLLNSSPICVNGVAVDQYLIGDGGYPLLPWL 307
+++ G D VL+ S+L E G+ + +L+GD + L WL
Sbjct: 187 MTVETSWPGSLQDCVVLQQSSLSSQFEA------------GMHKESWLLGDSSFFLRTWL 234
Query: 308 MVPF-VDANPGSSEENFNAAHN 328
M P + P +E +N AH+
Sbjct: 235 MTPLHIPETP--AEYRYNMAHS 254
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 99/252 (39%), Gaps = 32/252 (12%)
Query: 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPEE 192
+S + ++ L +GS + + ++++ CV + L ++ FP E
Sbjct: 67 ISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPADEA 126
Query: 193 -LGLISKSFEELTGLPNCCGVIDCTRFKIIKIDGSNSS----KDEDSIAVQIVVDSSSRM 247
+ + F L G+P G +DC I + + S K S+ +V D +
Sbjct: 127 AIQSLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLVVCDIRGAL 186
Query: 248 LSIVAGIRGDKGDSRVLKSSTLYKDIEEKKLLNSSPICVNGVAVDQYLIGDGGYPLLPWL 307
+++ G D VL+ S+L E G+ D +L+GD + L WL
Sbjct: 187 MTVETSWPGSLQDCAVLQQSSLSSQFE------------TGMPKDSWLLGDSSFFLHTWL 234
Query: 308 MVPF-VDANPGSSEENFNAAHNLMRVPALKAIASL--------KNWGVLSRPIDEDFKTA 358
+ P + P +E +N AH+ K + +L + G L ++ +
Sbjct: 235 LTPLHIPETP--AEYRYNRAHSATHSVIEKTLRTLCCRFRCLDGSKGALQYSPEK----S 288
Query: 359 VALIGACSILHN 370
+I AC +LHN
Sbjct: 289 SHIILACCVLHN 300
>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 18/201 (8%)
Query: 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPEE 192
+S + ++ L +GS + + ++++ CV + L ++ FP E
Sbjct: 67 ISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPVDEA 126
Query: 193 -LGLISKSFEELTGLPNCCGVIDCTRFKIIKIDGSNSS----KDEDSIAVQIVVDSSSRM 247
+ + F L G+P GV DC I + + S K S+ +V D +
Sbjct: 127 AVQSLKDEFYGLAGMPGVIGVADCIHVAIKAPNAEDLSYVNRKGLHSLNCLVVCDIRGAL 186
Query: 248 LSIVAGIRGDKGDSRVLKSSTLYKDIEEKKLLNSSPICVNGVAVDQYLIGDGGYPLLPWL 307
+++ G D VL+ S+L E G+ D +L+GD + L WL
Sbjct: 187 MTVETSWPGSLQDCAVLQRSSLTSQFE------------TGMPKDSWLLGDSSFFLRSWL 234
Query: 308 MVPFVDANPGSSEENFNAAHN 328
+ P + ++E +N AH+
Sbjct: 235 LTP-LPIPETAAEYRYNRAHS 254
>sp|Q552J0|TCPQ_DICDI T-complex protein 1 subunit theta OS=Dictyostelium discoideum
GN=cct8 PE=3 SV=1
Length = 537
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 142 GLFRLVNGSTYSEIA----TRFEV--TESVTRFCVKQLCRVLCTNFRFWVAFPGPEELGL 195
G+ +++GST SE+A RF++ ++F ++++C+ + + P PEELG
Sbjct: 281 GVKVIISGSTVSELALHYIERFKIMLVRIQSKFQLRRVCKAIGATPLVKLGAPIPEELGY 340
Query: 196 ISKSFEELTGLPNCC 210
+ E G CC
Sbjct: 341 CDEVLVEEIGSTKCC 355
>sp|P21367|YCAC_ECOLI Uncharacterized protein YcaC OS=Escherichia coli (strain K12)
GN=ycaC PE=1 SV=1
Length = 208
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 231 DEDSIAVQIVVDSSSRMLSIVAGIRGDKGDSRVLKSSTLYKDIEEKKLLNSSPICVNGVA 290
D++ AV ++VD + +LS+V I DK + VL L K +L +S
Sbjct: 9 DKNDAAV-LLVDHQAGLLSLVRDIEPDKFKNNVLALGDLAKYFNLPTILTTS-------- 59
Query: 291 VDQYLIGDGGYPLLPWLMVPFVDANPGSSEENFNAAHNLMRVPALKAIASLKNWGVLSRP 350
+ G G PL+P L F D + N NA N V A+KA K +++
Sbjct: 60 ---FETGPNG-PLVPELKAQFPDTPYIARPGNINAWDNEDFVKAVKATG--KKQLIIAGV 113
Query: 351 IDEDFKTAVALIGACSILHN-ALLMREDFSGLFEELGDYSLHDESSQ 396
+ E VA +I + + D SG F E+ +S D SQ
Sbjct: 114 VTE---VCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRLSQ 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,630,003
Number of Sequences: 539616
Number of extensions: 6294608
Number of successful extensions: 14695
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 14678
Number of HSP's gapped (non-prelim): 19
length of query: 440
length of database: 191,569,459
effective HSP length: 121
effective length of query: 319
effective length of database: 126,275,923
effective search space: 40282019437
effective search space used: 40282019437
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)