Query 013572
Match_columns 440
No_of_seqs 305 out of 1661
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 96.3 0.0033 1.1E-07 42.5 3.7 43 129-172 2-44 (51)
2 1jhg_A Trp operon repressor; c 95.6 0.0057 1.9E-07 49.0 2.6 51 133-184 36-92 (101)
3 2glo_A Brinker CG9653-PA; prot 95.4 0.0067 2.3E-07 43.4 2.3 43 130-173 3-49 (59)
4 2w7n_A TRFB transcriptional re 94.8 0.038 1.3E-06 44.2 5.3 59 104-177 4-62 (101)
5 1jko_C HIN recombinase, DNA-in 94.6 0.011 3.7E-07 40.3 1.3 41 130-171 3-43 (52)
6 2o8x_A Probable RNA polymerase 94.5 0.07 2.4E-06 38.8 5.8 49 132-181 15-63 (70)
7 2jn6_A Protein CGL2762, transp 94.3 0.038 1.3E-06 43.4 4.3 43 131-173 4-47 (97)
8 2p7v_B Sigma-70, RNA polymeras 93.7 0.064 2.2E-06 39.1 4.1 50 132-181 5-57 (68)
9 1tty_A Sigma-A, RNA polymerase 93.6 0.081 2.8E-06 40.8 4.7 50 132-181 18-70 (87)
10 3hug_A RNA polymerase sigma fa 93.3 0.12 4E-06 40.2 5.2 50 132-182 37-86 (92)
11 1ku3_A Sigma factor SIGA; heli 93.2 0.11 3.7E-06 38.5 4.7 47 132-178 10-59 (73)
12 3t72_q RNA polymerase sigma fa 92.6 0.14 4.9E-06 40.6 4.9 50 132-181 19-71 (99)
13 2elh_A CG11849-PA, LD40883P; s 92.5 0.083 2.8E-06 40.8 3.3 43 131-174 21-63 (87)
14 1fse_A GERE; helix-turn-helix 91.8 0.24 8.2E-06 36.2 5.0 46 131-178 10-55 (74)
15 1u78_A TC3 transposase, transp 91.1 0.12 4E-06 43.0 3.0 42 130-172 4-45 (141)
16 2x48_A CAG38821; archeal virus 90.5 0.066 2.3E-06 37.2 0.7 36 135-171 18-53 (55)
17 1je8_A Nitrate/nitrite respons 90.2 0.28 9.6E-06 37.2 4.1 45 132-178 21-65 (82)
18 1s7o_A Hypothetical UPF0122 pr 90.1 0.34 1.2E-05 39.4 4.8 50 132-182 22-71 (113)
19 3c57_A Two component transcrip 90.1 0.31 1.1E-05 38.1 4.4 45 132-178 27-71 (95)
20 2jrt_A Uncharacterized protein 89.4 0.33 1.1E-05 38.2 4.0 43 131-173 31-73 (95)
21 1pdn_C Protein (PRD paired); p 89.2 0.33 1.1E-05 39.2 4.1 42 132-174 17-58 (128)
22 1wy3_A Villin; structural prot 88.8 0.18 6.3E-06 31.9 1.7 20 95-114 2-21 (35)
23 1p4w_A RCSB; solution structur 88.6 0.56 1.9E-05 37.1 4.9 62 109-178 17-78 (99)
24 2rn7_A IS629 ORFA; helix, all 88.6 0.16 5.6E-06 40.5 1.8 42 131-172 5-53 (108)
25 1hlv_A CENP-B, major centromer 88.6 0.26 8.8E-06 40.7 3.0 48 130-177 5-53 (131)
26 1xsv_A Hypothetical UPF0122 pr 88.5 0.59 2E-05 37.8 5.1 50 132-182 25-74 (113)
27 1k78_A Paired box protein PAX5 88.5 0.38 1.3E-05 40.6 4.1 44 131-175 31-74 (149)
28 1or7_A Sigma-24, RNA polymeras 88.3 0.42 1.4E-05 41.8 4.4 51 132-183 140-190 (194)
29 1x3u_A Transcriptional regulat 88.2 0.36 1.2E-05 35.8 3.4 43 133-177 17-59 (79)
30 1rp3_A RNA polymerase sigma fa 88.2 0.5 1.7E-05 42.6 5.0 50 132-182 187-236 (239)
31 3mzy_A RNA polymerase sigma-H 87.8 0.7 2.4E-05 38.9 5.4 48 133-182 110-157 (164)
32 2rnj_A Response regulator prot 87.7 0.37 1.3E-05 37.2 3.3 44 132-177 29-72 (91)
33 1und_A Advillin, P92; actin bi 87.6 0.24 8.1E-06 31.8 1.7 21 94-114 3-23 (37)
34 1u78_A TC3 transposase, transp 87.4 1.6 5.3E-05 35.9 7.3 77 95-172 24-102 (141)
35 2jpc_A SSRB; DNA binding prote 87.4 0.46 1.6E-05 33.4 3.4 33 146-178 10-42 (61)
36 3frw_A Putative Trp repressor 86.9 0.87 3E-05 36.5 4.9 28 145-172 54-81 (107)
37 3ulq_B Transcriptional regulat 86.2 0.66 2.3E-05 35.9 3.9 45 131-177 28-72 (90)
38 3hot_A Transposable element ma 84.0 11 0.00039 35.7 12.6 162 97-265 30-220 (345)
39 1j1v_A Chromosomal replication 83.7 0.52 1.8E-05 37.0 2.2 48 131-178 28-76 (94)
40 2k27_A Paired box protein PAX- 82.1 0.73 2.5E-05 39.3 2.8 40 131-171 24-63 (159)
41 2lfw_A PHYR sigma-like domain; 82.1 1.2 4.3E-05 37.7 4.3 50 132-182 93-142 (157)
42 2q1z_A RPOE, ECF SIGE; ECF sig 81.8 0.83 2.8E-05 39.5 3.1 48 132-180 135-182 (184)
43 1iuf_A Centromere ABP1 protein 81.3 0.6 2.1E-05 39.5 1.9 46 130-175 9-62 (144)
44 1qzp_A Dematin; villin headpie 78.5 0.94 3.2E-05 33.2 1.9 22 94-115 34-55 (68)
45 3pvv_A Chromosomal replication 76.7 1.9 6.5E-05 34.2 3.4 49 131-179 32-80 (101)
46 3kor_A Possible Trp repressor; 75.0 1 3.5E-05 36.8 1.4 30 142-171 68-97 (119)
47 1yu8_X Villin; alpha helix, 3- 74.6 1 3.5E-05 32.9 1.1 22 94-115 33-54 (67)
48 2k6m_S Supervillin; SVHP, HP, 73.4 0.99 3.4E-05 33.0 0.8 21 94-114 33-53 (67)
49 2d1h_A ST1889, 109AA long hypo 71.8 3.1 0.00011 32.2 3.6 28 148-175 35-62 (109)
50 1l0o_C Sigma factor; bergerat 71.2 0.83 2.8E-05 41.1 0.0 44 132-176 198-241 (243)
51 1l9z_H Sigma factor SIGA; heli 71.2 3.1 0.00011 41.9 4.2 47 132-178 375-424 (438)
52 1l3l_A Transcriptional activat 71.1 4.7 0.00016 36.5 5.1 46 131-178 172-217 (234)
53 1uxc_A FRUR (1-57), fructose r 70.1 2.4 8.2E-05 30.6 2.3 21 151-171 2-22 (65)
54 1oyi_A Double-stranded RNA-bin 69.9 3.3 0.00011 31.5 3.1 39 134-174 17-55 (82)
55 4dyq_A Gene 1 protein; GP1, oc 69.6 2.6 9E-05 35.3 2.8 45 127-172 7-52 (140)
56 1zyb_A Transcription regulator 69.5 3.3 0.00011 37.1 3.6 79 95-175 123-212 (232)
57 2q0o_A Probable transcriptiona 69.4 4.3 0.00015 36.8 4.5 46 131-178 174-219 (236)
58 2a6h_F RNA polymerase sigma fa 69.4 2.9 0.0001 41.9 3.6 47 132-178 360-409 (423)
59 2heo_A Z-DNA binding protein 1 68.5 3.6 0.00012 29.7 3.0 27 149-175 25-51 (67)
60 3uj3_X DNA-invertase; helix-tu 67.9 1.1 3.7E-05 39.7 0.0 44 128-172 138-181 (193)
61 1zx4_A P1 PARB, plasmid partit 67.5 3.5 0.00012 36.6 3.3 29 144-172 19-47 (192)
62 3clo_A Transcriptional regulat 67.1 4.3 0.00015 37.5 4.0 45 132-178 197-241 (258)
63 3szt_A QCSR, quorum-sensing co 67.0 4.4 0.00015 36.9 4.0 45 131-177 174-218 (237)
64 1ujs_A Actin-binding LIM prote 66.8 1.4 4.9E-05 33.9 0.5 23 94-116 48-70 (88)
65 3tgn_A ADC operon repressor AD 65.4 18 0.00062 29.3 7.3 43 131-175 34-77 (146)
66 1y0u_A Arsenical resistance op 65.1 4.9 0.00017 30.9 3.4 29 147-175 41-69 (96)
67 2lkp_A Transcriptional regulat 64.6 5.8 0.0002 31.6 3.8 37 137-175 35-71 (119)
68 3r0a_A Putative transcriptiona 64.1 4 0.00014 33.2 2.8 26 150-175 43-68 (123)
69 1qgp_A Protein (double strande 64.1 4.8 0.00016 30.0 3.0 39 136-174 16-56 (77)
70 3qp6_A CVIR transcriptional re 63.8 9 0.00031 35.5 5.6 45 131-177 196-240 (265)
71 3dv8_A Transcriptional regulat 63.6 3.9 0.00014 35.9 2.9 63 133-195 146-216 (220)
72 3ryp_A Catabolite gene activat 62.9 4.8 0.00016 35.0 3.3 43 133-175 138-193 (210)
73 2l1p_A DNA-binding protein SAT 62.7 3.6 0.00012 31.1 2.0 24 148-171 31-54 (83)
74 2gxg_A 146AA long hypothetical 61.8 8.4 0.00029 31.4 4.5 42 132-175 34-76 (146)
75 2cob_A LCOR protein; MLR2, KIA 61.6 5.1 0.00017 29.4 2.6 39 134-172 14-53 (70)
76 1ku9_A Hypothetical protein MJ 61.5 4.7 0.00016 33.0 2.9 40 136-175 28-67 (152)
77 3cuo_A Uncharacterized HTH-typ 60.9 5.5 0.00019 30.3 3.0 27 149-175 38-64 (99)
78 2oa4_A SIR5; structure, struct 60.2 4.7 0.00016 31.9 2.4 43 133-175 34-76 (101)
79 2x4h_A Hypothetical protein SS 60.1 5.3 0.00018 32.6 2.9 28 148-175 30-57 (139)
80 2ao9_A Phage protein; structur 59.9 7.6 0.00026 33.2 3.8 40 132-171 23-70 (155)
81 2htj_A P fimbrial regulatory p 59.8 7.3 0.00025 28.9 3.4 27 149-175 14-40 (81)
82 2oz6_A Virulence factor regula 59.6 6 0.0002 34.3 3.3 43 133-175 135-190 (207)
83 1tbx_A ORF F-93, hypothetical 59.5 8.7 0.0003 29.4 3.9 39 136-175 10-52 (99)
84 2qvo_A Uncharacterized protein 59.5 4.6 0.00016 31.0 2.2 26 150-175 31-56 (95)
85 2zcw_A TTHA1359, transcription 59.2 7 0.00024 33.9 3.7 63 133-195 117-193 (202)
86 2jt1_A PEFI protein; solution 59.2 7.5 0.00026 29.0 3.3 49 105-174 1-49 (77)
87 1sfx_A Conserved hypothetical 59.1 7.8 0.00027 29.7 3.6 28 148-175 33-60 (109)
88 1qbj_A Protein (double-strande 59.1 8.1 0.00028 29.1 3.5 39 136-174 12-52 (81)
89 2fmy_A COOA, carbon monoxide o 58.5 4.4 0.00015 35.7 2.2 43 133-175 137-193 (220)
90 2kko_A Possible transcriptiona 58.0 7 0.00024 30.8 3.2 38 137-176 28-65 (108)
91 3b02_A Transcriptional regulat 57.7 7.7 0.00026 33.5 3.7 64 132-195 109-186 (195)
92 1zs4_A Regulatory protein CII; 57.7 24 0.00081 26.8 5.8 32 143-175 19-50 (83)
93 3iwz_A CAP-like, catabolite ac 57.6 7.6 0.00026 34.2 3.7 43 133-175 158-213 (230)
94 2l8n_A Transcriptional repress 57.5 2.9 0.0001 30.3 0.7 21 150-170 10-30 (67)
95 2l0k_A Stage III sporulation p 57.2 4.9 0.00017 31.3 2.0 25 148-172 19-43 (93)
96 2pij_A Prophage PFL 6 CRO; tra 56.9 6.4 0.00022 27.7 2.5 23 147-170 12-34 (67)
97 1r1u_A CZRA, repressor protein 56.9 6.2 0.00021 30.9 2.7 29 147-175 37-65 (106)
98 2fbh_A Transcriptional regulat 56.3 9 0.00031 31.1 3.7 40 136-175 39-78 (146)
99 3jth_A Transcription activator 56.3 6.5 0.00022 30.1 2.7 28 148-175 35-62 (98)
100 4aik_A Transcriptional regulat 56.2 7.6 0.00026 32.5 3.3 44 132-175 28-72 (151)
101 1ft9_A Carbon monoxide oxidati 55.4 6.7 0.00023 34.6 2.9 43 133-175 133-189 (222)
102 3la7_A Global nitrogen regulat 55.3 6.5 0.00022 35.4 2.9 81 95-175 124-219 (243)
103 3bpv_A Transcriptional regulat 55.2 11 0.00038 30.3 4.0 42 133-175 27-69 (138)
104 1pdn_C Protein (PRD paired); p 55.1 31 0.0011 27.0 6.8 78 94-172 34-126 (128)
105 3iyd_F RNA polymerase sigma fa 55.0 5.5 0.00019 41.9 2.6 48 132-179 550-600 (613)
106 3bro_A Transcriptional regulat 54.7 12 0.00042 30.1 4.3 43 133-175 32-76 (141)
107 4ev0_A Transcription regulator 54.3 5.6 0.00019 34.7 2.2 64 133-196 140-211 (216)
108 3ech_A MEXR, multidrug resista 54.0 11 0.00036 30.8 3.8 43 132-175 34-77 (142)
109 2di3_A Bacterial regulatory pr 54.0 11 0.00038 34.1 4.3 52 105-174 1-53 (239)
110 3g3z_A NMB1585, transcriptiona 53.9 11 0.00037 30.8 3.9 44 132-175 28-71 (145)
111 3k0l_A Repressor protein; heli 53.5 13 0.00044 31.1 4.3 43 132-175 43-86 (162)
112 2dk5_A DNA-directed RNA polyme 53.4 7.5 0.00026 30.0 2.5 45 131-175 16-62 (91)
113 2fu4_A Ferric uptake regulatio 53.1 12 0.00041 27.6 3.6 28 148-175 32-64 (83)
114 1r71_A Transcriptional repress 53.0 7.7 0.00026 33.9 2.8 40 131-170 34-73 (178)
115 1on2_A Transcriptional regulat 53.0 7.6 0.00026 31.9 2.7 28 148-175 21-48 (142)
116 3nrv_A Putative transcriptiona 52.8 12 0.00041 30.6 4.0 43 132-175 37-80 (148)
117 1p6r_A Penicillinase repressor 52.8 8.9 0.00031 28.3 2.8 42 133-175 7-53 (82)
118 3mky_B Protein SOPB; partition 52.8 8.4 0.00029 34.0 3.0 42 131-172 22-65 (189)
119 3hsr_A HTH-type transcriptiona 52.8 12 0.00041 30.4 3.9 43 132-175 33-76 (140)
120 3eco_A MEPR; mutlidrug efflux 52.2 8.3 0.00028 31.2 2.8 43 133-175 29-73 (139)
121 3oop_A LIN2960 protein; protei 52.1 10 0.00036 30.8 3.4 44 132-175 34-77 (143)
122 2pex_A Transcriptional regulat 52.0 12 0.00041 30.8 3.8 43 132-175 44-87 (153)
123 3plo_X DNA-invertase; resolvas 52.0 3 0.0001 36.7 0.0 32 143-174 152-183 (193)
124 2nnn_A Probable transcriptiona 52.0 11 0.00039 30.2 3.6 42 133-175 36-78 (140)
125 2oqg_A Possible transcriptiona 51.7 9.5 0.00033 29.8 3.0 38 136-175 23-60 (114)
126 3dkw_A DNR protein; CRP-FNR, H 51.6 7.5 0.00026 34.2 2.6 80 96-175 113-204 (227)
127 2rdp_A Putative transcriptiona 50.9 12 0.00043 30.5 3.7 43 132-175 39-82 (150)
128 2fbi_A Probable transcriptiona 50.9 11 0.00036 30.5 3.2 28 148-175 49-76 (142)
129 3kcc_A Catabolite gene activat 50.3 9 0.00031 34.9 3.0 43 133-175 188-243 (260)
130 1jgs_A Multiple antibiotic res 50.2 14 0.00046 29.7 3.8 43 132-175 31-74 (138)
131 1q1h_A TFE, transcription fact 50.2 11 0.00039 29.4 3.2 27 149-175 33-59 (110)
132 3deu_A Transcriptional regulat 50.1 11 0.00039 31.8 3.5 44 132-175 50-94 (166)
133 3cdh_A Transcriptional regulat 50.0 16 0.00056 30.0 4.4 42 133-175 41-83 (155)
134 3e6c_C CPRK, cyclic nucleotide 49.6 9.2 0.00031 34.4 2.9 44 132-175 146-203 (250)
135 2cw1_A SN4M; lambda CRO fold, 49.5 6.2 0.00021 28.5 1.3 21 150-170 14-34 (65)
136 3cjn_A Transcriptional regulat 49.5 13 0.00043 31.0 3.6 42 133-175 50-92 (162)
137 2a61_A Transcriptional regulat 49.5 13 0.00044 30.2 3.6 42 133-175 31-73 (145)
138 4hbl_A Transcriptional regulat 49.5 13 0.00044 30.6 3.6 43 132-175 38-81 (149)
139 2hin_A GP39, repressor protein 49.2 10 0.00036 27.7 2.6 22 151-172 12-33 (71)
140 3n0r_A Response regulator; sig 49.0 13 0.00046 34.6 4.0 49 133-182 112-160 (286)
141 1lj9_A Transcriptional regulat 48.7 11 0.00037 30.6 3.0 39 136-175 31-69 (144)
142 3bd1_A CRO protein; transcript 48.7 9.7 0.00033 27.8 2.4 24 147-171 10-33 (79)
143 3bdd_A Regulatory protein MARR 48.6 13 0.00045 29.9 3.5 28 148-175 44-71 (142)
144 2pg4_A Uncharacterized protein 48.5 9.1 0.00031 29.1 2.3 28 149-176 30-58 (95)
145 1z91_A Organic hydroperoxide r 48.4 12 0.00039 30.6 3.1 43 132-175 37-80 (147)
146 2frh_A SARA, staphylococcal ac 48.3 11 0.00037 30.4 2.9 44 132-175 34-79 (127)
147 2hr3_A Probable transcriptiona 48.2 12 0.00041 30.5 3.2 44 132-175 32-76 (147)
148 2b0l_A GTP-sensing transcripti 48.1 12 0.00041 29.4 3.0 25 151-175 45-69 (102)
149 3bj6_A Transcriptional regulat 48.0 14 0.00047 30.3 3.6 42 133-175 38-80 (152)
150 3bja_A Transcriptional regulat 48.0 12 0.0004 30.1 3.1 43 132-175 30-73 (139)
151 3fx3_A Cyclic nucleotide-bindi 47.9 12 0.0004 33.2 3.3 44 132-175 151-204 (237)
152 2qww_A Transcriptional regulat 47.8 14 0.00047 30.4 3.6 42 133-175 39-81 (154)
153 3fm5_A Transcriptional regulat 47.7 12 0.00041 30.8 3.1 43 133-175 37-80 (150)
154 2bv6_A MGRA, HTH-type transcri 47.4 12 0.0004 30.4 3.0 42 133-175 35-77 (142)
155 2xi8_A Putative transcription 47.2 8.7 0.0003 26.4 1.9 25 147-171 12-36 (66)
156 2fa5_A Transcriptional regulat 47.1 17 0.00057 30.2 4.0 42 133-175 47-89 (162)
157 3tqn_A Transcriptional regulat 47.0 15 0.00051 29.2 3.5 25 151-175 35-59 (113)
158 1xn7_A Hypothetical protein YH 46.7 14 0.00047 27.6 3.0 26 149-174 16-41 (78)
159 3kp7_A Transcriptional regulat 46.0 15 0.00052 30.1 3.5 41 133-175 36-77 (151)
160 1k78_A Paired box protein PAX5 45.7 60 0.002 26.5 7.3 79 94-173 49-142 (149)
161 2cyy_A Putative HTH-type trans 45.7 22 0.00074 29.6 4.5 28 148-175 20-47 (151)
162 1u2w_A CADC repressor, cadmium 45.7 7.3 0.00025 31.5 1.4 28 148-175 55-82 (122)
163 3d0s_A Transcriptional regulat 45.4 15 0.00052 32.2 3.7 81 95-175 108-203 (227)
164 3fmy_A HTH-type transcriptiona 45.0 10 0.00034 27.4 1.9 26 145-170 20-45 (73)
165 3pqk_A Biofilm growth-associat 44.9 14 0.00047 28.4 2.9 28 148-175 35-62 (102)
166 1s3j_A YUSO protein; structura 44.8 13 0.00044 30.6 2.9 42 133-175 35-77 (155)
167 2jsc_A Transcriptional regulat 44.1 14 0.00048 29.5 2.9 28 148-175 33-60 (118)
168 3f6o_A Probable transcriptiona 44.0 12 0.00039 29.9 2.4 29 147-175 29-57 (118)
169 3f6v_A Possible transcriptiona 43.7 13 0.00045 31.3 2.7 38 137-176 61-98 (151)
170 3f3x_A Transcriptional regulat 43.6 17 0.00058 29.5 3.4 25 151-175 52-76 (144)
171 1r69_A Repressor protein CI; g 43.2 11 0.00037 26.3 1.9 26 146-171 11-36 (69)
172 2gau_A Transcriptional regulat 43.2 23 0.00079 31.1 4.5 63 133-195 151-227 (232)
173 2cfx_A HTH-type transcriptiona 43.1 23 0.00078 29.2 4.2 28 148-175 18-45 (144)
174 1zug_A Phage 434 CRO protein; 43.1 12 0.00041 26.2 2.1 26 146-171 13-38 (71)
175 2eth_A Transcriptional regulat 42.9 16 0.00054 30.2 3.1 28 148-175 57-84 (154)
176 1c9b_A General transcription f 42.9 17 0.00058 32.1 3.5 80 98-181 108-191 (207)
177 1gdt_A GD resolvase, protein ( 42.9 10 0.00034 32.9 1.9 42 126-171 139-180 (183)
178 1r1t_A Transcriptional repress 42.9 19 0.00066 28.9 3.6 28 148-175 58-85 (122)
179 3s2w_A Transcriptional regulat 42.7 14 0.00047 30.8 2.7 39 136-175 52-90 (159)
180 3jw4_A Transcriptional regulat 42.6 14 0.00047 30.3 2.7 43 133-175 39-83 (148)
181 1okr_A MECI, methicillin resis 42.6 13 0.00043 29.6 2.4 43 132-175 7-54 (123)
182 2p5k_A Arginine repressor; DNA 42.5 16 0.00053 25.3 2.6 23 149-171 19-46 (64)
183 2g7u_A Transcriptional regulat 42.5 20 0.00069 32.8 4.1 43 133-175 10-55 (257)
184 2w48_A Sorbitol operon regulat 42.5 16 0.00053 34.7 3.4 34 141-174 13-46 (315)
185 1neq_A DNA-binding protein NER 42.4 11 0.00038 27.6 1.8 24 147-170 20-43 (74)
186 3e97_A Transcriptional regulat 42.4 13 0.00043 32.9 2.6 42 134-175 146-201 (231)
187 2w25_A Probable transcriptiona 42.3 21 0.00072 29.6 3.9 28 148-175 20-47 (150)
188 1fx7_A Iron-dependent represso 42.3 13 0.00044 33.5 2.7 41 135-175 7-50 (230)
189 1o5l_A Transcriptional regulat 42.3 5.3 0.00018 35.1 0.0 43 133-175 141-190 (213)
190 2a6c_A Helix-turn-helix motif; 42.2 13 0.00043 27.5 2.2 26 146-171 28-53 (83)
191 2pn6_A ST1022, 150AA long hypo 41.8 25 0.00086 29.0 4.3 27 149-175 17-43 (150)
192 1qpz_A PURA, protein (purine n 41.7 11 0.00039 35.5 2.3 22 151-172 2-23 (340)
193 3omt_A Uncharacterized protein 41.7 12 0.00042 26.6 2.0 42 147-200 19-60 (73)
194 1i1g_A Transcriptional regulat 41.6 20 0.00068 29.2 3.6 27 149-175 18-44 (141)
195 1rzs_A Antirepressor, regulato 41.6 7.8 0.00027 27.2 0.8 22 149-170 10-31 (61)
196 2zkz_A Transcriptional repress 41.6 11 0.00039 29.0 1.9 29 148-176 40-68 (99)
197 3kz3_A Repressor protein CI; f 41.6 12 0.00042 27.2 2.0 25 147-171 23-47 (80)
198 3neu_A LIN1836 protein; struct 41.5 17 0.00057 29.5 3.0 25 151-175 39-63 (125)
199 2nyx_A Probable transcriptiona 41.5 19 0.00065 30.3 3.5 42 133-175 43-85 (168)
200 1ub9_A Hypothetical protein PH 41.3 14 0.00048 27.9 2.4 28 148-175 29-56 (100)
201 2r1j_L Repressor protein C2; p 41.2 13 0.00044 25.7 2.0 25 147-171 16-40 (68)
202 1rr7_A Middle operon regulator 41.1 17 0.00057 30.0 2.9 28 148-175 91-118 (129)
203 2cg4_A Regulatory protein ASNC 40.7 28 0.00094 28.9 4.3 28 148-175 21-48 (152)
204 3e6m_A MARR family transcripti 40.6 16 0.00055 30.4 2.9 42 133-175 51-93 (161)
205 3qq6_A HTH-type transcriptiona 40.6 9.9 0.00034 27.8 1.3 28 144-171 18-45 (78)
206 1ais_B TFB TFIIB, protein (tra 40.3 28 0.00097 30.4 4.6 77 98-178 114-194 (200)
207 3nqo_A MARR-family transcripti 40.2 16 0.00056 31.6 2.9 43 133-175 39-83 (189)
208 3boq_A Transcriptional regulat 40.2 16 0.00055 30.2 2.8 43 133-175 45-88 (160)
209 1a04_A Nitrate/nitrite respons 40.1 14 0.00049 32.1 2.6 44 132-177 154-197 (215)
210 4ghj_A Probable transcriptiona 40.1 10 0.00034 29.8 1.3 25 145-169 45-69 (101)
211 2k02_A Ferrous iron transport 40.1 16 0.00054 28.0 2.4 25 149-173 16-40 (87)
212 1z4h_A TORI, TOR inhibition pr 39.8 17 0.00058 25.8 2.4 22 151-172 12-33 (66)
213 2o0y_A Transcriptional regulat 39.6 21 0.00072 32.8 3.7 44 132-175 18-64 (260)
214 2dbb_A Putative HTH-type trans 39.5 26 0.0009 28.9 4.0 28 148-175 22-49 (151)
215 2hsg_A Glucose-resistance amyl 39.3 11 0.00038 35.4 1.8 22 151-172 4-25 (332)
216 1vz0_A PARB, chromosome partit 39.2 18 0.00063 32.8 3.2 41 131-171 116-156 (230)
217 2b5a_A C.BCLI; helix-turn-heli 38.9 15 0.0005 26.2 2.0 26 146-171 20-45 (77)
218 1y7y_A C.AHDI; helix-turn-heli 38.8 15 0.00051 25.9 2.0 25 147-171 24-48 (74)
219 3b7h_A Prophage LP1 protein 11 38.8 16 0.00055 26.1 2.3 25 147-171 18-42 (78)
220 2ovg_A Phage lambda CRO; trans 38.8 17 0.00058 26.1 2.3 22 150-171 14-35 (66)
221 2ek5_A Predicted transcription 38.8 22 0.00075 29.0 3.3 23 151-173 30-52 (129)
222 2wiu_B HTH-type transcriptiona 38.5 17 0.00058 26.7 2.4 26 146-171 22-47 (88)
223 3by6_A Predicted transcription 38.2 20 0.00069 29.1 3.0 25 151-175 37-61 (126)
224 3u2r_A Regulatory protein MARR 38.0 17 0.00058 30.6 2.6 44 132-175 43-88 (168)
225 2ofy_A Putative XRE-family tra 38.0 22 0.00075 26.1 3.0 33 139-171 17-49 (86)
226 1mkm_A ICLR transcriptional re 37.9 16 0.00056 33.3 2.6 39 137-175 8-49 (249)
227 2p5v_A Transcriptional regulat 37.8 31 0.0011 28.9 4.3 27 149-175 24-50 (162)
228 2g9w_A Conserved hypothetical 37.6 21 0.0007 29.3 3.0 43 133-175 7-54 (138)
229 3h5t_A Transcriptional regulat 37.5 15 0.00053 35.0 2.5 23 150-172 10-32 (366)
230 4ham_A LMO2241 protein; struct 37.5 21 0.0007 29.2 3.0 23 151-173 40-62 (134)
231 2ia2_A Putative transcriptiona 37.3 22 0.00076 32.7 3.5 43 133-175 17-62 (265)
232 4b8x_A SCO5413, possible MARR- 37.2 25 0.00087 28.9 3.5 27 149-175 51-77 (147)
233 3bs3_A Putative DNA-binding pr 37.2 15 0.00052 26.1 1.9 42 147-200 21-62 (76)
234 2xrn_A HTH-type transcriptiona 37.1 16 0.00055 33.2 2.4 39 137-175 6-47 (241)
235 3m8j_A FOCB protein; all-alpha 36.9 68 0.0023 25.6 5.7 58 104-175 29-86 (111)
236 1adr_A P22 C2 repressor; trans 36.8 16 0.00056 25.8 2.0 25 147-171 16-40 (76)
237 3kjx_A Transcriptional regulat 36.8 12 0.00042 35.4 1.6 22 150-171 11-32 (344)
238 2r0q_C Putative transposon TN5 36.5 11 0.00037 33.5 1.1 27 145-171 171-197 (209)
239 2k9q_A Uncharacterized protein 36.4 18 0.00061 26.0 2.2 26 146-171 12-37 (77)
240 3eus_A DNA-binding protein; st 36.4 14 0.00048 27.5 1.6 27 145-171 23-49 (86)
241 2ia0_A Putative HTH-type trans 36.1 31 0.0011 29.5 4.0 28 148-175 30-57 (171)
242 2kpj_A SOS-response transcript 36.0 18 0.00063 27.2 2.3 25 147-171 20-44 (94)
243 3c3w_A Two component transcrip 35.5 16 0.00053 32.3 2.0 44 132-177 149-192 (225)
244 3s8q_A R-M controller protein; 35.4 13 0.00046 27.0 1.3 26 146-171 21-46 (82)
245 1xwr_A Regulatory protein CII; 34.8 33 0.0011 26.7 3.5 25 149-173 23-47 (97)
246 3r4k_A Transcriptional regulat 34.8 26 0.0009 32.2 3.5 40 136-175 5-47 (260)
247 2ict_A Antitoxin HIGA; helix-t 34.5 22 0.00076 26.7 2.5 38 133-172 7-44 (94)
248 2bgc_A PRFA; bacterial infecti 34.3 17 0.00057 32.4 2.1 65 133-197 138-219 (238)
249 1v4r_A Transcriptional repress 34.3 13 0.00043 28.8 1.1 21 151-171 37-57 (102)
250 3mn2_A Probable ARAC family tr 34.3 1E+02 0.0035 23.5 6.6 73 95-175 20-96 (108)
251 2ewt_A BLDD, putative DNA-bind 34.1 25 0.00085 24.5 2.6 42 147-200 19-62 (71)
252 3o9x_A Uncharacterized HTH-typ 34.0 17 0.0006 29.4 1.9 27 145-171 80-106 (133)
253 3f6w_A XRE-family like protein 33.9 21 0.0007 26.0 2.2 26 146-171 24-49 (83)
254 1yio_A Response regulatory pro 33.7 20 0.00067 30.9 2.4 43 133-177 143-185 (208)
255 2wte_A CSA3; antiviral protein 33.0 30 0.001 31.6 3.6 27 149-175 166-192 (244)
256 2ppx_A AGR_C_3184P, uncharacte 32.5 17 0.00059 27.8 1.6 25 146-170 40-64 (99)
257 2ef8_A C.ECOT38IS, putative tr 32.5 21 0.00072 25.9 2.0 25 147-171 21-45 (84)
258 1sfu_A 34L protein; protein/Z- 32.4 50 0.0017 24.4 3.9 30 142-171 20-51 (75)
259 3hrs_A Metalloregulator SCAR; 32.3 31 0.0011 30.7 3.5 38 137-174 5-45 (214)
260 1j9i_A GPNU1 DBD;, terminase s 32.3 13 0.00046 26.5 0.8 22 151-172 4-25 (68)
261 2f2e_A PA1607; transcription f 32.3 23 0.00078 29.5 2.4 28 148-175 36-63 (146)
262 2h09_A Transcriptional regulat 32.3 30 0.001 28.6 3.2 28 148-175 53-80 (155)
263 2fxa_A Protease production reg 32.1 29 0.00099 30.6 3.2 43 132-175 45-88 (207)
264 3trb_A Virulence-associated pr 32.1 22 0.00077 27.8 2.2 40 131-171 10-49 (104)
265 2e1c_A Putative HTH-type trans 32.0 40 0.0014 28.8 4.0 27 149-175 41-67 (171)
266 1lmb_3 Protein (lambda repress 31.8 23 0.00079 26.3 2.2 26 146-171 27-52 (92)
267 1j5y_A Transcriptional regulat 31.7 37 0.0013 29.4 3.8 26 149-174 36-61 (187)
268 1sd4_A Penicillinase repressor 31.2 28 0.00094 27.6 2.7 43 132-175 7-54 (126)
269 2hzt_A Putative HTH-type trans 31.2 37 0.0013 26.3 3.4 29 147-175 25-54 (107)
270 2eby_A Putative HTH-type trans 31.0 23 0.00078 27.6 2.1 27 145-171 20-46 (113)
271 3t76_A VANU, transcriptional r 30.8 25 0.00084 26.7 2.2 42 146-200 34-75 (88)
272 3ctp_A Periplasmic binding pro 30.4 11 0.00036 35.6 0.0 22 151-172 4-25 (330)
273 2o20_A Catabolite control prot 30.4 11 0.00037 35.6 0.0 22 151-172 7-28 (332)
274 2k27_A Paired box protein PAX- 30.4 88 0.003 25.8 5.9 78 94-172 42-134 (159)
275 1uly_A Hypothetical protein PH 30.2 35 0.0012 29.9 3.4 27 148-174 32-58 (192)
276 3dn7_A Cyclic nucleotide bindi 30.1 11 0.00037 32.2 0.0 41 133-173 149-192 (194)
277 3cec_A Putative antidote prote 30.0 24 0.00081 27.1 2.0 26 146-171 28-53 (104)
278 2qq9_A Diphtheria toxin repres 29.8 22 0.00074 32.0 2.0 40 136-175 8-50 (226)
279 1z7u_A Hypothetical protein EF 29.5 38 0.0013 26.5 3.2 36 138-175 26-62 (112)
280 3bil_A Probable LACI-family tr 29.4 11 0.00039 35.8 0.0 22 151-172 10-31 (348)
281 2vn2_A DNAD, chromosome replic 29.1 34 0.0012 27.7 2.9 26 150-175 52-77 (128)
282 3h5o_A Transcriptional regulat 29.1 12 0.0004 35.4 0.0 23 150-172 5-27 (339)
283 1fc3_A SPO0A; response regulat 29.0 1.1E+02 0.0037 24.8 5.8 33 148-180 47-79 (120)
284 1x57_A Endothelial differentia 28.7 34 0.0012 25.4 2.7 44 145-200 22-65 (91)
285 2obp_A Putative DNA-binding pr 28.7 39 0.0013 26.2 3.0 26 150-175 37-62 (96)
286 1jye_A Lactose operon represso 28.4 12 0.00042 35.6 0.0 23 151-173 5-27 (349)
287 3dbi_A Sugar-binding transcrip 28.2 12 0.00042 35.2 0.0 22 151-172 5-26 (338)
288 3dew_A Transcriptional regulat 28.0 33 0.0011 28.8 2.8 34 149-182 28-61 (206)
289 3jvd_A Transcriptional regulat 27.9 13 0.00043 35.2 0.0 23 150-172 7-29 (333)
290 4fx0_A Probable transcriptiona 27.8 50 0.0017 27.2 3.8 27 149-175 52-78 (148)
291 2l49_A C protein; P2 bacteriop 27.7 28 0.00095 26.3 2.0 25 146-170 14-38 (99)
292 3e3m_A Transcriptional regulat 27.4 13 0.00044 35.4 0.0 22 151-172 14-35 (355)
293 2v57_A TETR family transcripti 27.4 38 0.0013 28.2 3.1 34 148-181 31-64 (190)
294 1b0n_A Protein (SINR protein); 27.2 28 0.00097 26.7 2.0 26 146-171 11-36 (111)
295 3gzi_A Transcriptional regulat 27.1 38 0.0013 28.9 3.1 34 149-182 37-70 (218)
296 3bqz_B HTH-type transcriptiona 27.1 32 0.0011 28.7 2.5 34 148-181 21-54 (194)
297 2fq4_A Transcriptional regulat 27.1 28 0.00097 29.4 2.2 29 149-177 32-60 (192)
298 2k4b_A Transcriptional regulat 26.9 26 0.00088 27.3 1.7 39 136-175 37-79 (99)
299 3oou_A LIN2118 protein; protei 26.8 47 0.0016 25.5 3.3 29 146-174 18-46 (108)
300 1wft_A 1700129L13RIK protein; 26.8 1.2E+02 0.0042 24.3 5.5 51 204-254 5-67 (123)
301 3i4p_A Transcriptional regulat 26.7 62 0.0021 27.1 4.3 26 150-175 18-43 (162)
302 3oou_A LIN2118 protein; protei 26.7 1E+02 0.0034 23.6 5.3 73 95-175 23-97 (108)
303 3op9_A PLI0006 protein; struct 26.5 35 0.0012 26.5 2.5 26 146-171 19-44 (114)
304 2fbk_A Transcriptional regulat 26.4 24 0.00083 30.0 1.6 43 133-175 67-112 (181)
305 3ic7_A Putative transcriptiona 26.4 24 0.00083 28.6 1.5 24 151-174 37-60 (126)
306 2zcm_A Biofilm operon icaabcd 26.3 32 0.0011 28.9 2.4 33 149-181 27-59 (192)
307 1y6u_A XIS, excisionase from t 26.1 38 0.0013 24.6 2.4 22 151-172 18-39 (70)
308 3g5g_A Regulatory protein; tra 26.0 26 0.0009 26.9 1.6 26 146-171 38-63 (99)
309 2d6y_A Putative TETR family re 25.8 41 0.0014 28.7 3.1 33 149-181 28-60 (202)
310 3lwj_A Putative TETR-family tr 25.8 32 0.0011 29.0 2.3 34 149-182 32-65 (202)
311 3qkx_A Uncharacterized HTH-typ 25.8 33 0.0011 28.4 2.3 33 149-181 28-60 (188)
312 3on4_A Transcriptional regulat 25.7 29 0.001 28.8 2.0 33 149-181 30-62 (191)
313 3klo_A Transcriptional regulat 25.5 31 0.001 30.2 2.2 41 133-175 160-200 (225)
314 3k2z_A LEXA repressor; winged 25.5 48 0.0016 28.8 3.4 26 149-174 24-49 (196)
315 3kxa_A NGO0477 protein, putati 25.2 36 0.0012 28.1 2.4 27 145-171 77-103 (141)
316 1yyv_A Putative transcriptiona 25.2 56 0.0019 26.5 3.5 28 148-175 47-75 (131)
317 3egq_A TETR family transcripti 25.1 31 0.0011 28.3 2.0 33 149-181 24-56 (170)
318 3cta_A Riboflavin kinase; stru 25.0 42 0.0014 30.0 3.0 27 149-175 27-53 (230)
319 2eh3_A Transcriptional regulat 24.9 34 0.0012 28.4 2.3 33 149-181 22-54 (179)
320 3mlf_A Transcriptional regulat 24.8 29 0.00099 27.3 1.7 27 145-171 32-58 (111)
321 3mn2_A Probable ARAC family tr 24.8 45 0.0015 25.6 2.8 27 148-174 17-43 (108)
322 3iwf_A Transcription regulator 24.7 47 0.0016 26.2 2.9 23 149-171 35-57 (107)
323 2o3f_A Putative HTH-type trans 24.5 38 0.0013 26.8 2.3 23 149-171 39-61 (111)
324 2jvl_A TRMBF1; coactivator, he 24.5 93 0.0032 24.0 4.7 23 147-169 47-69 (107)
325 3vk0_A NHTF, transcriptional r 24.3 29 0.001 27.2 1.6 36 135-170 18-55 (114)
326 2fsw_A PG_0823 protein; alpha- 24.2 52 0.0018 25.4 3.1 29 147-175 36-65 (107)
327 3ivp_A Putative transposon-rel 24.2 33 0.0011 27.3 1.9 44 145-200 21-64 (126)
328 3c2b_A Transcriptional regulat 24.2 41 0.0014 28.8 2.8 34 148-181 34-67 (221)
329 2hku_A A putative transcriptio 24.0 47 0.0016 28.5 3.1 34 148-181 38-71 (215)
330 3ppb_A Putative TETR family tr 24.0 36 0.0012 28.2 2.3 33 149-181 29-61 (195)
331 1hw1_A FADR, fatty acid metabo 24.0 44 0.0015 29.8 3.0 23 152-174 34-56 (239)
332 2qtq_A Transcriptional regulat 23.8 48 0.0016 28.0 3.1 33 149-181 36-68 (213)
333 3lhq_A Acrab operon repressor 23.7 36 0.0012 28.8 2.3 33 149-181 34-66 (220)
334 4aci_A HTH-type transcriptiona 23.7 38 0.0013 28.2 2.4 34 149-182 34-67 (191)
335 2opt_A Actii protein; helical 23.5 52 0.0018 29.4 3.3 51 131-181 4-58 (234)
336 2jj7_A Hemolysin II regulatory 23.5 38 0.0013 28.2 2.3 35 149-183 27-61 (186)
337 2fe3_A Peroxide operon regulat 23.4 53 0.0018 27.1 3.1 27 149-175 37-68 (145)
338 2dg8_A Putative TETR-family tr 23.4 34 0.0012 28.8 2.0 33 149-181 29-61 (193)
339 2g7s_A Transcriptional regulat 23.2 34 0.0012 28.4 2.0 33 149-181 28-60 (194)
340 2k9s_A Arabinose operon regula 23.2 62 0.0021 24.8 3.4 27 148-174 19-45 (107)
341 3lsg_A Two-component response 23.2 79 0.0027 23.9 4.0 72 95-174 21-94 (103)
342 3hot_A Transposable element ma 23.1 46 0.0016 31.3 3.1 39 137-175 10-55 (345)
343 2wus_R RODZ, putative uncharac 23.0 35 0.0012 27.1 1.8 27 145-171 16-42 (112)
344 3kz9_A SMCR; transcriptional r 22.9 39 0.0013 28.4 2.3 33 149-181 37-69 (206)
345 2hyt_A TETR-family transcripti 22.8 50 0.0017 27.9 3.0 34 148-181 31-64 (197)
346 3oio_A Transcriptional regulat 22.8 67 0.0023 24.9 3.5 28 147-174 21-48 (113)
347 2wui_A MEXZ, transcriptional r 22.7 39 0.0013 28.9 2.3 27 148-174 30-56 (210)
348 3dpj_A Transcription regulator 22.7 40 0.0014 28.2 2.3 33 149-181 28-60 (194)
349 3df8_A Possible HXLR family tr 22.7 55 0.0019 25.6 3.0 32 144-175 34-69 (111)
350 3bhq_A Transcriptional regulat 22.7 50 0.0017 28.2 3.0 34 148-181 31-64 (211)
351 3knw_A Putative transcriptiona 22.6 40 0.0014 28.6 2.3 33 149-181 34-66 (212)
352 2yve_A Transcriptional regulat 22.5 40 0.0014 28.3 2.3 33 149-181 24-56 (185)
353 2i10_A Putative TETR transcrip 22.5 49 0.0017 28.2 2.9 34 148-181 30-63 (202)
354 1pb6_A Hypothetical transcript 22.5 41 0.0014 28.5 2.4 33 149-181 38-70 (212)
355 2zb9_A Putative transcriptiona 22.2 37 0.0013 29.1 2.0 33 149-181 43-75 (214)
356 3vib_A MTRR; helix-turn-helix 22.1 41 0.0014 28.7 2.3 31 148-178 29-59 (210)
357 2auw_A Hypothetical protein NE 22.1 30 0.001 29.9 1.3 27 143-169 97-123 (170)
358 3cwr_A Transcriptional regulat 22.1 38 0.0013 28.5 2.0 33 149-181 37-69 (208)
359 3f1b_A TETR-like transcription 21.8 41 0.0014 28.2 2.2 33 149-181 34-66 (203)
360 1u8b_A ADA polyprotein; protei 21.8 58 0.002 26.2 3.0 40 136-175 78-119 (133)
361 1ais_B TFB TFIIB, protein (tra 21.7 77 0.0026 27.4 4.0 75 98-176 18-96 (200)
362 2wv0_A YVOA, HTH-type transcri 21.6 52 0.0018 29.7 3.0 24 152-175 37-60 (243)
363 3vp5_A Transcriptional regulat 21.3 44 0.0015 28.2 2.3 33 149-181 32-64 (189)
364 3f0c_A TETR-molecule A, transc 21.2 45 0.0015 28.4 2.3 33 149-181 31-63 (216)
365 3edp_A LIN2111 protein; APC883 21.1 55 0.0019 29.5 3.0 24 152-175 36-59 (236)
366 3bru_A Regulatory protein, TET 21.1 44 0.0015 28.6 2.3 33 149-181 50-82 (222)
367 3lsg_A Two-component response 21.0 72 0.0025 24.2 3.3 26 149-174 19-44 (103)
368 3f52_A CLP gene regulator (CLG 21.0 46 0.0016 26.0 2.2 38 134-171 24-63 (117)
369 3f8m_A GNTR-family protein tra 21.0 55 0.0019 29.7 3.0 23 152-174 39-61 (248)
370 2qwt_A Transcriptional regulat 20.9 44 0.0015 28.3 2.2 33 149-181 32-64 (196)
371 2nx4_A Transcriptional regulat 20.9 45 0.0016 28.1 2.3 31 148-178 29-59 (194)
372 3vpr_A Transcriptional regulat 20.8 48 0.0017 27.7 2.4 29 149-177 23-51 (190)
373 3frq_A Repressor protein MPHR( 20.8 46 0.0016 27.9 2.3 33 149-181 28-60 (195)
374 2rek_A Putative TETR-family tr 20.7 42 0.0014 28.3 2.0 33 149-181 35-67 (199)
375 2xdn_A HTH-type transcriptiona 20.7 45 0.0015 28.5 2.2 34 148-181 30-63 (210)
376 2p8t_A Hypothetical protein PH 20.6 69 0.0024 28.4 3.4 40 136-175 17-56 (200)
377 2ibd_A Possible transcriptiona 20.6 45 0.0015 28.3 2.2 33 148-180 33-65 (204)
378 2o38_A Hypothetical protein; a 20.5 49 0.0017 26.5 2.3 26 146-171 50-75 (120)
379 3dcf_A Transcriptional regulat 20.4 47 0.0016 28.2 2.3 33 149-181 51-83 (218)
380 3rh2_A Hypothetical TETR-like 20.3 43 0.0015 28.6 2.0 33 149-181 23-55 (212)
381 3bwg_A Uncharacterized HTH-typ 20.3 58 0.002 29.3 3.0 23 152-174 32-54 (239)
382 2o7t_A Transcriptional regulat 20.2 43 0.0015 28.3 2.0 33 149-181 28-60 (199)
383 3qbm_A TETR transcriptional re 20.2 34 0.0011 28.6 1.2 31 148-178 26-56 (199)
384 3anp_C Transcriptional repress 20.0 40 0.0014 28.6 1.8 32 149-180 29-60 (204)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.30 E-value=0.0033 Score=42.46 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHH
Q 013572 129 LPLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 129 r~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
|+..++++++..+... +..|.++.+||..+|||.+||++++++
T Consensus 2 R~~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 2 RGSALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CSCCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 4456888887666544 468999999999999999999988754
No 2
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=95.61 E-value=0.0057 Score=48.97 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=39.6
Q ss_pred CCHHHHHhhheee-----ccCC-CchhhhhhhhccChhhHHHHHHHHHHHHHHhhhhh
Q 013572 133 LSADIRLGIGLFR-----LVNG-STYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFW 184 (440)
Q Consensus 133 is~e~~L~i~L~~-----La~g-~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~~~ 184 (440)
+++.++-++.+++ |..| .+|++||...|+|.+||+|+ ++....+...++.+
T Consensus 36 LT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k~~ 92 (101)
T 1jhg_A 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELRQW 92 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHHHH
Confidence 7788887777766 3367 99999999999999999999 66666555555443
No 3
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=95.45 E-value=0.0067 Score=43.37 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCCCCHHHHHhhheeeccCCCc----hhhhhhhhccChhhHHHHHHHH
Q 013572 130 PLNLSADIRLGIGLFRLVNGST----YSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 130 ~~~is~e~~L~i~L~~La~g~s----~~~la~~Fgvs~sTv~~~v~~v 173 (440)
+...+++.++.+ +.++..|.+ ..++|..|||+.+|++++++..
T Consensus 3 r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 456899999988 777888888 9999999999999999987653
No 4
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=94.84 E-value=0.038 Score=44.16 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 104 KMSSSTFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 104 Rms~~tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
|||.+.|+.+...++ ++ +.-+-++=.||-.|.+..+||..+|+|+++|++.+.+.-+..
T Consensus 4 rmT~~eFe~~~~~l~--------------~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~ 62 (101)
T 2w7n_A 4 RLTESQFQEAIQGLE--------------VG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp CCCHHHHHHHHTTCC--------------CC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccCC--------------hH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 799999999996551 22 344556667788999999999999999999999988877654
No 5
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=94.57 E-value=0.011 Score=40.28 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=29.5
Q ss_pred CCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHH
Q 013572 130 PLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 130 ~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
+..+++++.-.+ +..+..|.+..++|..+|||.+||+++++
T Consensus 3 p~~~~~~~~~~i-~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 3 PRAINKHEQEQI-SRLLEKGHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCSSCTTHHHHH-HHHHHTTCCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCCCCHHHHHHH-HHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 344555543322 22356789999999999999999998754
No 6
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=94.51 E-value=0.07 Score=38.79 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=40.3
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+|+.++-.+.|+| ..|.++.+||..+|+|.+||.+.+++....|...+
T Consensus 15 ~L~~~~r~il~l~~-~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQ-LLGLSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 47888887777766 46899999999999999999999998887776554
No 7
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=94.35 E-value=0.038 Score=43.44 Aligned_cols=43 Identities=9% Similarity=0.137 Sum_probs=37.4
Q ss_pred CCCCHHHHHhhheeeccC-CCchhhhhhhhccChhhHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVN-GSTYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~-g~s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
...|++.+..+.-.++.. |.+..+++..||||.+|++++++..
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 468899998888777777 9999999999999999999987754
No 8
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=93.69 E-value=0.064 Score=39.14 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=42.6
Q ss_pred CCCHHHHHhhheee-c--cCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 132 NLSADIRLGIGLFR-L--VNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 132 ~is~e~~L~i~L~~-L--a~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+|+.++-.+.|+| + ..|.++.+||..+|+|.+||....++....|-..+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999888 3 58999999999999999999999888877665443
No 9
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=93.58 E-value=0.081 Score=40.77 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=43.0
Q ss_pred CCCHHHHHhhheee-cc--CCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 132 NLSADIRLGIGLFR-LV--NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 132 ~is~e~~L~i~L~~-La--~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+|+.++-.+.|+| |. .|.++.+||..+|+|.+||..+..+....|...+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 48889999999988 45 7899999999999999999999988887776544
No 10
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=93.28 E-value=0.12 Score=40.19 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=42.3
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
.+|+.++-.+.|+|+ .|.++.+||..+|+|.+||...+++....|...+.
T Consensus 37 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 378888888877664 78999999999999999999999988887776653
No 11
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=93.21 E-value=0.11 Score=38.50 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=41.7
Q ss_pred CCCHHHHHhhheeec-c--CCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRL-V--NGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 132 ~is~e~~L~i~L~~L-a--~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
.+|+.++-.+.|+|. . .|.++.+||..+|+|.+||..+..+....|.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 589999998988884 3 7899999999999999999999998888776
No 12
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=92.59 E-value=0.14 Score=40.63 Aligned_cols=50 Identities=20% Similarity=0.089 Sum_probs=43.7
Q ss_pred CCCHHHHHhhheeec---cCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 132 NLSADIRLGIGLFRL---VNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 132 ~is~e~~L~i~L~~L---a~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+|+.++-.+.|+|. ..|.++.+||..+|+|.+||..+..+....|-..+
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999885 37899999999999999999999998888876554
No 13
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=92.49 E-value=0.083 Score=40.75 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=34.8
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
...+++.+..+.-.+ ..|.+..++|..||||.+|+++++++.-
T Consensus 21 ~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 21 RSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467888877665444 5789999999999999999999987644
No 14
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=91.77 E-value=0.24 Score=36.24 Aligned_cols=46 Identities=26% Similarity=0.225 Sum_probs=38.5
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
..+++.++-.+.+ +..|.++.++|..+|+|.+||+..+.+....+.
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4588888877766 388999999999999999999999888776653
No 15
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.10 E-value=0.12 Score=43.03 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=34.8
Q ss_pred CCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHH
Q 013572 130 PLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 130 ~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+..++.+++..+...+ ..|.+...+|..+|+|.+||++++++
T Consensus 4 ~~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 4 GSALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp SCCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 3568888887766544 68999999999999999999998764
No 16
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=90.55 E-value=0.066 Score=37.18 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=27.8
Q ss_pred HHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHH
Q 013572 135 ADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 135 ~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
++..-.+... +..|.++.++|..+|+|.+||+++++
T Consensus 18 ~~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4444444333 57899999999999999999998864
No 17
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=90.24 E-value=0.28 Score=37.22 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=38.1
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
.+++.++-.+.| +..|.++.+||..+|+|.+||...+++....+.
T Consensus 21 ~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILKL--IAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 488888877777 379999999999999999999998887776553
No 18
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=90.15 E-value=0.34 Score=39.37 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=41.2
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
.+|+.++-.+.|+| ..|.++.+||..+|+|.+||...+++....+...+.
T Consensus 22 ~L~~~~r~vl~l~y-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 22 LLTDKQMNYIELYY-ADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp GSCHHHHHHHHHHH-HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 37777776666654 478999999999999999999999999888876654
No 19
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=90.14 E-value=0.31 Score=38.09 Aligned_cols=45 Identities=29% Similarity=0.347 Sum_probs=38.9
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
.+++.++-.+.|+ ..|.++.+||...|+|.+||...+.+....|.
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4888888888874 89999999999999999999998888776654
No 20
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=89.36 E-value=0.33 Score=38.22 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=39.5
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
...+.+.|+.+.+..+..+.+..+++..|+|+.+++.++.+.+
T Consensus 31 rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 31 RRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999887665
No 21
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=89.17 E-value=0.33 Score=39.22 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=35.2
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
.++.+.+..+...+ ..|.+..++|..||||.+||+++++.+.
T Consensus 17 ~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57888887776544 5899999999999999999999987654
No 22
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=88.78 E-value=0.18 Score=31.91 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.0
Q ss_pred ChhHHHhhcCCCHHHHHHHH
Q 013572 95 LPDSFRNSFKMSSSTFRWLS 114 (440)
Q Consensus 95 ~~~~F~~~fRms~~tF~~L~ 114 (440)
+|++|...|+|+++.|..|=
T Consensus 2 sd~dF~~vFgmsr~eF~~LP 21 (35)
T 1wy3_A 2 SDEDFKAVFGMTRSAFANLP 21 (35)
T ss_dssp CHHHHHHHHSSCHHHHHHSC
T ss_pred CHHHHHHHHCCCHHHHHHCc
Confidence 57999999999999999874
No 23
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=88.61 E-value=0.56 Score=37.12 Aligned_cols=62 Identities=16% Similarity=-0.005 Sum_probs=46.1
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 109 TFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 109 tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
....+++.+.+.- .+ ...+++.++-.+.| +..|.++.+||...|+|.+||...+.+..+.+.
T Consensus 17 ~~~~~l~~l~~~~---~~---~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 17 SVAKLLEKISAGG---YG---DKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp HHHHHHHHHHCCC---CS---SSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHccCC---cc---cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4455666665432 11 24689888877666 469999999999999999999999888776553
No 24
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=88.58 E-value=0.16 Score=40.50 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCCCHHHHHhhheeeccCC-------CchhhhhhhhccChhhHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNG-------STYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g-------~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
...|++.++.+.-.++..| .++..++..||||.+|++++++.
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 4688999988877777665 79999999999999999988765
No 25
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=88.56 E-value=0.26 Score=40.66 Aligned_cols=48 Identities=23% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCCCCHHHHHhhheeeccCCCchh-hhhhhhccChhhHHHHHHHHHHHH
Q 013572 130 PLNLSADIRLGIGLFRLVNGSTYS-EIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 130 ~~~is~e~~L~i~L~~La~g~s~~-~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
+..++.+.+..+.-.+..+|.+.. ++|..|||+.+|++++++..-...
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 357999999988766657777766 999999999999999998765543
No 26
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=88.50 E-value=0.59 Score=37.84 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=41.6
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
.+|+.++-.+.|+| ..|.++.+||..+|+|.+||...+++....|...+.
T Consensus 25 ~L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 37777777766654 578999999999999999999999999888876664
No 27
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.45 E-value=0.38 Score=40.58 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=36.8
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..++.+.+..+...+ ..|.+...+|..||||.+||+++++++..
T Consensus 31 ~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 358888888777655 57999999999999999999999887643
No 28
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=88.31 E-value=0.42 Score=41.79 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=43.5
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhhh
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRF 183 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~~ 183 (440)
.+|+.++-++.|+++ .|.++.+||...|+|.+||...+.+....|-+.+..
T Consensus 140 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 190 (194)
T 1or7_A 140 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 190 (194)
T ss_dssp HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hCCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888776 689999999999999999999999988887776643
No 29
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=88.25 E-value=0.36 Score=35.84 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=35.1
Q ss_pred CCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 133 is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
+|+.++-.+.| + ..|.++.+||..+|+|.+||...+.+....+
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 56666666666 3 7899999999999999999999888776654
No 30
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=88.24 E-value=0.5 Score=42.63 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=43.8
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
.+|+.++-.+.|+|+ .|.++.+||..+|+|.+||...+++....|-+.+.
T Consensus 187 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 489999999988876 68999999999999999999999988888776653
No 31
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=87.77 E-value=0.7 Score=38.85 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=40.8
Q ss_pred CCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 133 is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
+|+.++-.+. + .-.|.++.+||..+|+|.+||...+++....|-+.+.
T Consensus 110 L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 110 FSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp SCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7778887777 4 5579999999999999999999999998888777664
No 32
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=87.71 E-value=0.37 Score=37.19 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=36.8
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
.+++.++-.+.| +..|.++.+||..+|+|.+||...+.+....+
T Consensus 29 ~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEILLL--IAKGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHHHH--HHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 477777777777 37999999999999999999999888776654
No 33
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=87.64 E-value=0.24 Score=31.82 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.5
Q ss_pred CChhHHHhhcCCCHHHHHHHH
Q 013572 94 QLPDSFRNSFKMSSSTFRWLS 114 (440)
Q Consensus 94 ~~~~~F~~~fRms~~tF~~L~ 114 (440)
-+|++|...|+|+++.|..|=
T Consensus 3 Lsd~dF~~vFgmsr~eF~~LP 23 (37)
T 1und_A 3 LSEQDFVSVFGITRGQFAALP 23 (37)
T ss_dssp CCHHHHHHHHSSCHHHHHHSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 368999999999999999864
No 34
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=87.45 E-value=1.6 Score=35.95 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=53.1
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHhhheeeccCCCchhhhhhhhc--cChhhHHHHHHH
Q 013572 95 LPDSFRNSFKMSSSTFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLFRLVNGSTYSEIATRFE--VTESVTRFCVKQ 172 (440)
Q Consensus 95 ~~~~F~~~fRms~~tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~~La~g~s~~~la~~Fg--vs~sTv~~~v~~ 172 (440)
+-.+--..+++++.|+...+.......... ..+++..+++++...+.-.....+.+...|+..+| +|.+||++++++
T Consensus 24 s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~-~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVYLKDPVSYGTSK-RAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHSGGGTTCCC-CCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHcccccCCcC-CCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 456667788999999999887655432211 23445567777654443222334478999999999 899999998876
No 35
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=87.44 E-value=0.46 Score=33.36 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=29.0
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
+..|.++.+||...|+|.+||...+.+....+.
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 688999999999999999999999888776543
No 36
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=86.89 E-value=0.87 Score=36.45 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=24.6
Q ss_pred eccCCCchhhhhhhhccChhhHHHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
.|..|.+|++|+...|+|.+||+|+-+.
T Consensus 54 lL~~G~SyreIa~~tG~StaTIsRv~r~ 81 (107)
T 3frw_A 54 MLTDKRTYLDISEKTGASTATISRVNRS 81 (107)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCccHHHHHHHHHH
Confidence 4889999999999999999999986443
No 37
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=86.23 E-value=0.66 Score=35.92 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=36.8
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
..+++.++-.+.| ++.|.++.+||...|+|..||..++.+....+
T Consensus 28 ~~Lt~rE~~Vl~l--~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 28 DVLTPRECLILQE--VEKGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp -CCCHHHHHHHHH--HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4588887776655 44999999999999999999999988876654
No 38
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=84.00 E-value=11 Score=35.74 Aligned_cols=162 Identities=9% Similarity=0.031 Sum_probs=89.7
Q ss_pred hHHHhhcC---CCHHHHHHHHHHhccc---ccccCCCCCCCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHH
Q 013572 97 DSFRNSFK---MSSSTFRWLSGLLEPL---LDCRDPVGLPLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 97 ~~F~~~fR---ms~~tF~~L~~~L~~~---l~~~~~~~r~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v 170 (440)
..+.+.|+ +++.|+...+.....- +......|++..++.+.-..+ + .-....+++.|+..++||.+||++++
T Consensus 30 ~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~~~i~~~-v-~~~~~~t~~~ia~~l~vs~~tV~r~L 107 (345)
T 3hot_A 30 RMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQAL-L-DEDDAQTQKQLAEQLEVSQQAVSNRL 107 (345)
T ss_dssp HHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCHHHHHHH-H-HHCSCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccHHHHHHH-H-HhCccchHHHHHHHHCCCHHHHHHHH
Confidence 45667788 9999999999876531 111222355555665333222 2 23445678999999999999999998
Q ss_pred HHHHHHHHHhhhhhhcCC---ChhhH---HHHHHHHHh---hhCCCCccccccceEEEEeecC--------CC------C
Q 013572 171 KQLCRVLCTNFRFWVAFP---GPEEL---GLISKSFEE---LTGLPNCCGVIDCTRFKIIKID--------GS------N 227 (440)
Q Consensus 171 ~~v~~~i~~~l~~~I~~P---~~~~~---~~~~~~f~~---~~~fP~ciGaIDgthi~i~~p~--------~~------n 227 (440)
++. .. ..... ...| +.... .+.+..... ...+++-+-.+|-+.+....+. +. .
T Consensus 108 ~~~-g~-~~k~~--~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~~~~ 183 (345)
T 3hot_A 108 REM-GK-IQKVG--RWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTAR 183 (345)
T ss_dssp HHT-TC-EEEEC--CEESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEESCCCCCCEEEECSSSCCCCEEC
T ss_pred HHh-CC-eeecc--ccccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhcccceeEEecCccceeeeccCCCCCCCCcC
Confidence 762 11 11111 1123 22111 111211111 1246777888899988754221 10 1
Q ss_pred CCCCCCcEEEEeecCCCceEEeeecCCCCCCCChhhhh
Q 013572 228 SSKDEDSIAVQIVVDSSSRMLSIVAGIRGDKGDSRVLK 265 (440)
Q Consensus 228 ~k~~~~si~~q~v~D~~~rf~~v~~g~pGs~~D~~v~~ 265 (440)
++.+..++.+.++.+..|.+.+......|++ ++..+.
T Consensus 184 ~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~~~y~ 220 (345)
T 3hot_A 184 PNRFGKKTMLCVWWDQSGVIYYELLKPGETV-NAARYQ 220 (345)
T ss_dssp CCTTCCEEEEEEEEESSSEEEEEEECSSCCC-CHHHHH
T ss_pred ccCcCCcEEEEEEEcccCceeeEecCCCCcc-cHHHHH
Confidence 1112346778888899997665555322343 455544
No 39
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=83.65 E-value=0.52 Score=36.96 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=42.1
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhh-ccChhhHHHHHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRF-EVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~F-gvs~sTv~~~v~~v~~~i~ 178 (440)
..+...-|++|.|.+--+|.|+.+||..| |...|||...++++-+.+.
T Consensus 28 ~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 28 RSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 45777889999999888999999999999 8999999998888877654
No 40
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=82.11 E-value=0.73 Score=39.32 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=33.2
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..++.+.+..+...+ ..|.+..++|..||||.+||+++++
T Consensus 24 ~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 24 RPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHC
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 457888887776544 6899999999999999999998754
No 41
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=82.10 E-value=1.2 Score=37.72 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=42.6
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
.+|+.++-++.|+++ .|.++.+||...|+|.+||...+.+....|-+.+.
T Consensus 93 ~Lp~~~r~vl~L~~~-~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLLTAM-EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTTTSS-SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 588888888877665 58999999999999999999999988888776654
No 42
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=81.82 E-value=0.83 Score=39.47 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=40.5
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHh
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTN 180 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~ 180 (440)
.+|+.++-++.|+++ .|.++.+||...|+|.+||...+++....|-+.
T Consensus 135 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 378888888888665 689999999999999999999988887766543
No 43
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=81.26 E-value=0.6 Score=39.48 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=38.1
Q ss_pred CCCCCHHHHHhhheee--ccCCCchhhhhh----hh--ccChhhHHHHHHHHHH
Q 013572 130 PLNLSADIRLGIGLFR--LVNGSTYSEIAT----RF--EVTESVTRFCVKQLCR 175 (440)
Q Consensus 130 ~~~is~e~~L~i~L~~--La~g~s~~~la~----~F--gvs~sTv~~~v~~v~~ 175 (440)
+..++.++++.+..++ -..+.+..++|. .| +||++||+++++.--.
T Consensus 9 R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 9 RRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp SSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 4679999999999988 344567889999 99 9999999999877443
No 44
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=78.48 E-value=0.94 Score=33.23 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.2
Q ss_pred CChhHHHhhcCCCHHHHHHHHH
Q 013572 94 QLPDSFRNSFKMSSSTFRWLSG 115 (440)
Q Consensus 94 ~~~~~F~~~fRms~~tF~~L~~ 115 (440)
-++++|...|+|+++.|..|=.
T Consensus 34 LsdedF~~vFgmsr~eF~~LP~ 55 (68)
T 1qzp_A 34 LSAEDFSRVFAMSPEEFGKLAL 55 (68)
T ss_dssp BCHHHHHHHSSSCHHHHHHSCH
T ss_pred CCHHHHHHHHCcCHHHHHHChH
Confidence 4789999999999999998743
No 45
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=76.74 E-value=1.9 Score=34.18 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=41.7
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCT 179 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~ 179 (440)
..+...-|++|.|.+=-++.|+.+||..||...|||...++++-+.+.+
T Consensus 32 ~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 32 RALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 3566778899999888899999999999999999999888887776553
No 46
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=74.95 E-value=1 Score=36.75 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=25.9
Q ss_pred heeeccCCCchhhhhhhhccChhhHHHHHH
Q 013572 142 GLFRLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 142 ~L~~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
.+..|+.|.+|++|+...|+|..||+|+-+
T Consensus 68 V~klL~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 68 VAKMIKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHHHHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 345589999999999999999999998544
No 47
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=74.59 E-value=1 Score=32.91 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.1
Q ss_pred CChhHHHhhcCCCHHHHHHHHH
Q 013572 94 QLPDSFRNSFKMSSSTFRWLSG 115 (440)
Q Consensus 94 ~~~~~F~~~fRms~~tF~~L~~ 115 (440)
-++++|...|+|+++.|..|=.
T Consensus 33 LsdedF~~vFgms~~eF~~LP~ 54 (67)
T 1yu8_X 33 LSDEDFKAVFGMTRSAFANLPL 54 (67)
T ss_dssp SCHHHHHHHHSSCHHHHHTSCH
T ss_pred CCHHHHHHHHCcCHHHHHHChH
Confidence 4689999999999999987643
No 48
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=73.42 E-value=0.99 Score=32.98 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=18.5
Q ss_pred CChhHHHhhcCCCHHHHHHHH
Q 013572 94 QLPDSFRNSFKMSSSTFRWLS 114 (440)
Q Consensus 94 ~~~~~F~~~fRms~~tF~~L~ 114 (440)
-++++|...|+|+++.|..|=
T Consensus 33 LsdedF~~vFgmsr~eF~~LP 53 (67)
T 2k6m_S 33 LTDEDFEFALDMTRDEYNALP 53 (67)
T ss_dssp SCHHHHHHHTSSCHHHHTTSC
T ss_pred CCHHHHHHHHCcCHHHHHHCc
Confidence 478999999999999998763
No 49
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=71.81 E-value=3.1 Score=32.17 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.3
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+|+..+|+|++||++++....+
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3567789999999999999998877654
No 50
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=71.23 E-value=0.83 Score=41.10 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRV 176 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~ 176 (440)
.+|+.++-.+.|+++ .|.++.+||..+|+|.+||...+++....
T Consensus 198 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ---------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 478888888888776 68999999999999999999887765543
No 51
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=71.22 E-value=3.1 Score=41.87 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCCHHHHHhhheee-cc--CCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFR-LV--NGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 132 ~is~e~~L~i~L~~-La--~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
.+|+.++-.+.|+| |. .|.++.+||..+|||..||..+.++....|-
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 48889999999988 44 6789999999999999999999988887776
No 52
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=71.12 E-value=4.7 Score=36.50 Aligned_cols=46 Identities=17% Similarity=0.093 Sum_probs=38.7
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
..+++.++-.+.| ++.|.++.+||...|+|.+||...+++..+.+.
T Consensus 172 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4589888877655 579999999999999999999999888776553
No 53
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=70.06 E-value=2.4 Score=30.61 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=18.4
Q ss_pred chhhhhhhhccChhhHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~ 171 (440)
+..+||...|||.+||+++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 467899999999999999765
No 54
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=69.85 E-value=3.3 Score=31.47 Aligned_cols=39 Identities=8% Similarity=0.064 Sum_probs=30.4
Q ss_pred CHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 134 SADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 134 s~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
+...++...|. ..|.+..+||..+|+|+++|.+.+....
T Consensus 17 ~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~Le 55 (82)
T 1oyi_A 17 EIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDLQ 55 (82)
T ss_dssp HHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44566666666 4569999999999999999998876554
No 55
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=69.65 E-value=2.6 Score=35.28 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=33.4
Q ss_pred CCCCCCCCHHHHHhhheeeccCCCchhhhhhhhcc-ChhhHHHHHHH
Q 013572 127 VGLPLNLSADIRLGIGLFRLVNGSTYSEIATRFEV-TESVTRFCVKQ 172 (440)
Q Consensus 127 ~~r~~~is~e~~L~i~L~~La~g~s~~~la~~Fgv-s~sTv~~~v~~ 172 (440)
.|||..++++.. --.+-+++.|.+.++++..+|| |.+|+++++.+
T Consensus 7 ~GRPtk~t~e~~-e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 7 AGRPSDYMPEVA-DDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp ---CCSCCTTHH-HHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHH-HHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 455556665543 3345667899999999999999 99999999876
No 56
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=69.46 E-value=3.3 Score=37.11 Aligned_cols=79 Identities=6% Similarity=-0.130 Sum_probs=51.5
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhcccccc---cCCCCCCCCCCHHHHHhhheeeccCC--------CchhhhhhhhccCh
Q 013572 95 LPDSFRNSFKMSSSTFRWLSGLLEPLLDC---RDPVGLPLNLSADIRLGIGLFRLVNG--------STYSEIATRFEVTE 163 (440)
Q Consensus 95 ~~~~F~~~fRms~~tF~~L~~~L~~~l~~---~~~~~r~~~is~e~~L~i~L~~La~g--------~s~~~la~~Fgvs~ 163 (440)
+.+.|...+.-.+.....++..+...+.. +-.. -...++++|++-+|..++.. .+..+||...|+++
T Consensus 123 ~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~--l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr 200 (232)
T 1zyb_A 123 SKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWD--EPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTR 200 (232)
T ss_dssp EHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTS--CCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCH
T ss_pred EHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCCh
Confidence 34566666665555544444444332211 1111 12468999999999887542 47889999999999
Q ss_pred hhHHHHHHHHHH
Q 013572 164 SVTRFCVKQLCR 175 (440)
Q Consensus 164 sTv~~~v~~v~~ 175 (440)
.|++|+++++.+
T Consensus 201 ~tvsR~l~~l~~ 212 (232)
T 1zyb_A 201 LNISKTLNELQD 212 (232)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 999998887653
No 57
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=69.42 E-value=4.3 Score=36.84 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=38.6
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
..+++.++-.+.| ++.|.++.+||...|||.+||..++.+..+.+.
T Consensus 174 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4589888877655 579999999999999999999998887776553
No 58
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=69.38 E-value=2.9 Score=41.89 Aligned_cols=47 Identities=26% Similarity=0.249 Sum_probs=37.1
Q ss_pred CCCHHHHHhhheee-cc--CCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFR-LV--NGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 132 ~is~e~~L~i~L~~-La--~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
.+|+.++-.+.|+| |. .|.++.+||..+|||..||..+..+....|-
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 37889999999988 54 6789999999999999999999988888776
No 59
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=68.46 E-value=3.6 Score=29.68 Aligned_cols=27 Identities=7% Similarity=0.115 Sum_probs=22.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..+..+||..+|+|++||++++.....
T Consensus 25 ~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 25 PVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp CEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999998776543
No 60
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=67.86 E-value=1.1 Score=39.66 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHH
Q 013572 128 GLPLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 128 ~r~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
|+++.+.++ ++.-...++..|.++..||..+|||.+|+++++++
T Consensus 138 Gr~~~~~~~-~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 138 GRPPKLTKA-EWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp ---------------------------------------------
T ss_pred CCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344444443 33334455678999999999999999999988764
No 61
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=67.47 E-value=3.5 Score=36.63 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=25.6
Q ss_pred eeccCCCchhhhhhhhccChhhHHHHHHH
Q 013572 144 FRLVNGSTYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 144 ~~La~g~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+++..|.+..+||..+|||+++|++.+..
T Consensus 19 ~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 19 RMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 34678999999999999999999998765
No 62
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=67.06 E-value=4.3 Score=37.45 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=39.5
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
.+|+.++-.+.|+ ..|.++.+||...|+|.+||...+++..+.|.
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 5899999988885 49999999999999999999998888776653
No 63
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=67.04 E-value=4.4 Score=36.94 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=37.9
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
..+++.++-.+.| ++.|.+..+||...|||..||..++.+..+.+
T Consensus 174 ~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 174 VRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp CCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 4688888866655 68999999999999999999999988876654
No 64
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=66.76 E-value=1.4 Score=33.89 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.7
Q ss_pred CChhHHHhhcCCCHHHHHHHHHH
Q 013572 94 QLPDSFRNSFKMSSSTFRWLSGL 116 (440)
Q Consensus 94 ~~~~~F~~~fRms~~tF~~L~~~ 116 (440)
-++++|...|+|+++.|..|=..
T Consensus 48 LSdedF~~vFgMsr~eF~~LP~W 70 (88)
T 1ujs_A 48 LSQEEFYQVFGMTISEFDRLALW 70 (88)
T ss_dssp SCTTHHHHHHSSCHHHHTTSCHH
T ss_pred CCHHHHHHHHCcCHHHHHHChHH
Confidence 46899999999999999887543
No 65
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=65.36 E-value=18 Score=29.31 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCCCHHHHHhh-heeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 131 LNLSADIRLGI-GLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 131 ~~is~e~~L~i-~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.++++.+...+ .|+ .+|.+..+|+..+|++++||++++....+
T Consensus 34 ~~lt~~~~~iL~~l~--~~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 34 VALTNTQEHILMLLS--EESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp SCCCHHHHHHHHHHT--TCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--hCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45676554433 343 23489999999999999999998777654
No 66
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=65.09 E-value=4.9 Score=30.86 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.6
Q ss_pred cCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..+.+..+|+..+|+|++||+++++...+
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56688999999999999999998776554
No 67
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=64.57 E-value=5.8 Score=31.62 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 137 IRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 137 ~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.++...|.. .+.++.+++..+|++++||++.++...+
T Consensus 35 ~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 35 LMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp HHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444433 4789999999999999999999888766
No 68
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=64.09 E-value=4 Score=33.16 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.6
Q ss_pred CchhhhhhhhccChhhHHHHHHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+..+|+...+++++||++.+....+
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46789999999999999999887765
No 69
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=64.08 E-value=4.8 Score=29.99 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=28.7
Q ss_pred HHHHhhheeeccC--CCchhhhhhhhccChhhHHHHHHHHH
Q 013572 136 DIRLGIGLFRLVN--GSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 136 e~~L~i~L~~La~--g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
+.++.-.|...+. +.+..+||..+|++++||.+.+....
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455555555552 56889999999999999998866554
No 70
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=63.79 E-value=9 Score=35.52 Aligned_cols=45 Identities=29% Similarity=0.296 Sum_probs=37.8
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
..+++.++-.+.|. +.|.++.+||...|||..||..++.+..+.+
T Consensus 196 ~~Lt~re~~vl~~~--~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHWM--SRGKTNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 36888877766654 7999999999999999999999988877654
No 71
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=63.64 E-value=3.9 Score=35.89 Aligned_cols=63 Identities=17% Similarity=0.051 Sum_probs=44.7
Q ss_pred CCHHHHHhhheeeccC-------CCchhhhhhhhccChhhHHHHHHHHHHH-HHHhhhhhhcCCChhhHHH
Q 013572 133 LSADIRLGIGLFRLVN-------GSTYSEIATRFEVTESVTRFCVKQLCRV-LCTNFRFWVAFPGPEELGL 195 (440)
Q Consensus 133 is~e~~L~i~L~~La~-------g~s~~~la~~Fgvs~sTv~~~v~~v~~~-i~~~l~~~I~~P~~~~~~~ 195 (440)
.+++++++-+|..++. ..+..++|...|+++.|++|+++++.+. +.+.-+..|..++.+.+++
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~ 216 (220)
T 3dv8_A 146 KSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITILDSKRLET 216 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHHHHHH
Confidence 6789999999988765 5678999999999999999998877652 1111123344455444443
No 72
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=62.89 E-value=4.8 Score=35.02 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=35.4
Q ss_pred CCHHHHHhhheeeccCC-------------CchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVNG-------------STYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La~g-------------~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++++++.+|..++.. .+..++|...|+++.|++|+++++.+
T Consensus 138 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 138 LDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp SCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 57899999998887642 35789999999999999998877654
No 73
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=62.69 E-value=3.6 Score=31.11 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.8
Q ss_pred CCCchhhhhhhhccChhhHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
.|.++.++|...|||++|++.|++
T Consensus 31 ~GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 31 KDMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TTSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HhcCHHHHHHHcCCCHHHHHHHHc
Confidence 399999999999999999998755
No 74
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=61.80 E-value=8.4 Score=31.36 Aligned_cols=42 Identities=26% Similarity=0.091 Sum_probs=31.4
Q ss_pred CCCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+ .+...|+ ..+.+..+++..+|++++||++.+.+..+
T Consensus 34 ~l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 34 NLSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp TCCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 355544 4444554 67789999999999999999988776554
No 75
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=61.63 E-value=5.1 Score=29.37 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=32.9
Q ss_pred CHHHHHhhheeeccCC-CchhhhhhhhccChhhHHHHHHH
Q 013572 134 SADIRLGIGLFRLVNG-STYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 134 s~e~~L~i~L~~La~g-~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
--+++|..++.-+..| .|....|..|||+.+|+..-|+.
T Consensus 14 Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~ 53 (70)
T 2cob_A 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHh
Confidence 3488888899999999 89999999999999998755443
No 76
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=61.51 E-value=4.7 Score=32.99 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=29.2
Q ss_pred HHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.++...|+.-..+.+..+|+..+|++++||++++....+
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445555522245778999999999999999998776553
No 77
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=60.91 E-value=5.5 Score=30.29 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.7
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.+..+++..+|+|++||++.+....+
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578999999999999999998887654
No 78
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=60.25 E-value=4.7 Score=31.87 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=37.2
Q ss_pred CCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.....|+++.......+.|+.+.+..|+||.+++.++.+.+.+
T Consensus 34 Wva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 34 WVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5556799999999999999999999999999999988776543
No 79
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=60.05 E-value=5.3 Score=32.65 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..++|..+|++++||++.++...+
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3568899999999999999998776654
No 80
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=59.94 E-value=7.6 Score=33.20 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=30.6
Q ss_pred CCCHHHHHhhhee---ecc-----CCCchhhhhhhhccChhhHHHHHH
Q 013572 132 NLSADIRLGIGLF---RLV-----NGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 132 ~is~e~~L~i~L~---~La-----~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
.++.+.+.++.+. .+. .|.+..++|...|||++|++++.+
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3677777776542 221 267999999999999999999888
No 81
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=59.79 E-value=7.3 Score=28.86 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=22.7
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.+..+|+..+|+|++||++.+....+
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999988776553
No 82
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=59.60 E-value=6 Score=34.29 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=34.9
Q ss_pred CCHHHHHhhheeeccC-------------CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVN-------------GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La~-------------g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++++++-+|..|+. ..+..+||...|+++.|++|+++++.+
T Consensus 135 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 135 LDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5789999988876654 246789999999999999998887653
No 83
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=59.53 E-value=8.7 Score=29.39 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=28.7
Q ss_pred HHHHhhheeeccCCCchhhh----hhhhccChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLVNGSTYSEI----ATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La~g~s~~~l----a~~Fgvs~sTv~~~v~~v~~ 175 (440)
+..+...|+. ..+.+..+| +..++++++||++++.+..+
T Consensus 10 q~~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 10 EAIVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp HHHHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444433 346778889 99999999999999888776
No 84
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=59.48 E-value=4.6 Score=30.98 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.9
Q ss_pred CchhhhhhhhccChhhHHHHHHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+..+|+..++++++||++++....+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67889999999999999998877654
No 85
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=59.23 E-value=7 Score=33.89 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=44.2
Q ss_pred CCHHHHHhhheeeccC-------------CCchhhhhhhhccChhhHHHHHHHHHHH-HHHhhhhhhcCCChhhHHH
Q 013572 133 LSADIRLGIGLFRLVN-------------GSTYSEIATRFEVTESVTRFCVKQLCRV-LCTNFRFWVAFPGPEELGL 195 (440)
Q Consensus 133 is~e~~L~i~L~~La~-------------g~s~~~la~~Fgvs~sTv~~~v~~v~~~-i~~~l~~~I~~P~~~~~~~ 195 (440)
.+++++++-+|..++. ..+..+||...|+++.||+++++++.+. +.+.-+..|...+.+.+.+
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~ 193 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKE 193 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHHHHHH
Confidence 5789999999988753 2467899999999999999998887642 2222234455555544443
No 86
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=59.21 E-value=7.5 Score=29.03 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 105 MSSSTFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 105 ms~~tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
|++.....|++.|+..+.... +...+.++|+..||+|.+||.+.+....
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~---------------------g~~psv~EIa~~lgvS~~TVrr~L~~Le 49 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDD---------------------GAPVKTRDIADAAGLSIYQVRLYLEQLH 49 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHT---------------------TSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcc---------------------CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677777777765433210 1233578999999999999988766544
No 87
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=59.12 E-value=7.8 Score=29.70 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.3
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+|+..+|++++||++.+....+
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999887664
No 88
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=59.06 E-value=8.1 Score=29.12 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=26.6
Q ss_pred HHHHhhheeecc--CCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 136 DIRLGIGLFRLV--NGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 136 e~~L~i~L~~La--~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
++++.-.|.-.+ ...+..+||..+|||++||.+.+.+..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444444333 246788999999999999988765543
No 89
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=58.50 E-value=4.4 Score=35.75 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=36.2
Q ss_pred CCHHHHHhhheeeccC--------------CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVN--------------GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La~--------------g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++++++-+|..++. ..+..++|...|+++.|++++++++.+
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4789999999887753 467889999999999999999888754
No 90
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=58.04 E-value=7 Score=30.79 Aligned_cols=38 Identities=13% Similarity=-0.024 Sum_probs=28.7
Q ss_pred HHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHH
Q 013572 137 IRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRV 176 (440)
Q Consensus 137 ~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~ 176 (440)
.++...|. ..+.+..+|+..+|++++||++.++...++
T Consensus 28 ~~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 28 LQILDLLA--QGERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp HHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444443 356789999999999999999998877653
No 91
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=57.69 E-value=7.7 Score=33.46 Aligned_cols=64 Identities=17% Similarity=0.014 Sum_probs=44.4
Q ss_pred CCCHHHHHhhheeeccC--C-----------CchhhhhhhhccChhhHHHHHHHHHHH-HHHhhhhhhcCCChhhHHH
Q 013572 132 NLSADIRLGIGLFRLVN--G-----------STYSEIATRFEVTESVTRFCVKQLCRV-LCTNFRFWVAFPGPEELGL 195 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~--g-----------~s~~~la~~Fgvs~sTv~~~v~~v~~~-i~~~l~~~I~~P~~~~~~~ 195 (440)
..+++++++-+|..++. | .+..++|...|+++.||+++++++.+. +.+.-+..|...+.+.+.+
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~ 186 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYLLDLAALER 186 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEECCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHH
Confidence 36789999999988763 2 467899999999999999999887643 2222223455555544443
No 92
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=57.67 E-value=24 Score=26.75 Aligned_cols=32 Identities=13% Similarity=0.008 Sum_probs=23.6
Q ss_pred eeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 143 LFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 143 L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
|..|+. .+...+|+..||+.||++|+-..++.
T Consensus 19 L~~La~-~gQ~~vAe~~GvdeStISR~k~~~~~ 50 (83)
T 1zs4_A 19 LNKIAM-LGTEKTAEAVGVDKSQISRWKRDWIP 50 (83)
T ss_dssp HHHHHH-HCHHHHHHHHTSCHHHHHHHHHHTHH
T ss_pred HHHHHH-HhhHHHHHHhCCCHHHHhhhhhhHHH
Confidence 344443 45789999999999999997665543
No 93
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=57.63 E-value=7.6 Score=34.25 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=35.6
Q ss_pred CCHHHHHhhheeeccCC-------------CchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVNG-------------STYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La~g-------------~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++++++-+|..++.. .+..++|...|+++.|++|+++++.+
T Consensus 158 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 158 LDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 57899999999887642 35789999999999999998876653
No 94
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=57.51 E-value=2.9 Score=30.32 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=18.5
Q ss_pred CchhhhhhhhccChhhHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v 170 (440)
.+..+||...|||.+||++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHH
Confidence 367899999999999999864
No 95
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=57.20 E-value=4.9 Score=31.26 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.8
Q ss_pred CCCchhhhhhhhccChhhHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
.+.+..++|..+|||.+||++.++.
T Consensus 19 ~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 19 TKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3467899999999999999998875
No 96
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=56.92 E-value=6.4 Score=27.70 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.7
Q ss_pred cCCCchhhhhhhhccChhhHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v 170 (440)
..| ++..+|...|+|++|+++++
T Consensus 12 ~~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 12 EHG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HcC-CHHHHHHHHCcCHHHHHHHH
Confidence 456 99999999999999999986
No 97
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=56.90 E-value=6.2 Score=30.89 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=24.9
Q ss_pred cCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..+.+..+++..+|+|++||+++++...+
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44568999999999999999999887664
No 98
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.35 E-value=9 Score=31.11 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=30.1
Q ss_pred HHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+..+...|+.-..+.+..+|+..+|++++||++++.+..+
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 4445555534456789999999999999999998776554
No 99
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=56.33 E-value=6.5 Score=30.10 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.2
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+|+..+|+|++||++.++...+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4568999999999999999999887654
No 100
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=56.18 E-value=7.6 Score=32.50 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=30.9
Q ss_pred CCCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+ .+...|.....+.+..+||..++++++|+++++.+..+
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 355444 34444554555667789999999999999998776553
No 101
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=55.43 E-value=6.7 Score=34.60 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=35.7
Q ss_pred CCHHHHHhhheeeccC--------------CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVN--------------GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La~--------------g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++++++-+|..++. ..+..+||...|+++.|++++++++.+
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5778999999887762 256789999999999999999888754
No 102
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=55.30 E-value=6.5 Score=35.41 Aligned_cols=81 Identities=12% Similarity=-0.037 Sum_probs=51.3
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhcccccccCCCC-CCCCCCHHHHHhhheeeccC--------------CCchhhhhhhh
Q 013572 95 LPDSFRNSFKMSSSTFRWLSGLLEPLLDCRDPVG-LPLNLSADIRLGIGLFRLVN--------------GSTYSEIATRF 159 (440)
Q Consensus 95 ~~~~F~~~fRms~~tF~~L~~~L~~~l~~~~~~~-r~~~is~e~~L~i~L~~La~--------------g~s~~~la~~F 159 (440)
+.+.|...+.-.+.....++..+...+....... .-...++++||+-+|..++. ..+..+||...
T Consensus 124 ~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~l 203 (243)
T 3la7_A 124 PIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAI 203 (243)
T ss_dssp EHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHH
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHH
Confidence 4456666666666655555544433221100000 00135789999999887642 34678999999
Q ss_pred ccChhhHHHHHHHHHH
Q 013572 160 EVTESVTRFCVKQLCR 175 (440)
Q Consensus 160 gvs~sTv~~~v~~v~~ 175 (440)
|+++.||+|+++++.+
T Consensus 204 G~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 204 GSTRVTVTRLLGDLRE 219 (243)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999887664
No 103
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=55.18 E-value=11 Score=30.29 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+- +...|+. ..+.+..+++..+|++++||++.+.+..+
T Consensus 27 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 27 LTDAQVACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp CCHHHHHHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 554433 3334433 45678999999999999999998776554
No 104
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=55.08 E-value=31 Score=26.97 Aligned_cols=78 Identities=14% Similarity=0.025 Sum_probs=46.7
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccc--ccccCCCC-CCCCCCHHHHHhhheeecc--CCCchhhhhhhh---c-----
Q 013572 94 QLPDSFRNSFKMSSSTFRWLSGLLEPL--LDCRDPVG-LPLNLSADIRLGIGLFRLV--NGSTYSEIATRF---E----- 160 (440)
Q Consensus 94 ~~~~~F~~~fRms~~tF~~L~~~L~~~--l~~~~~~~-r~~~is~e~~L~i~L~~La--~g~s~~~la~~F---g----- 160 (440)
.+-.+.-+.|++++.|+...+...... .......+ ++..++++..-.+. .++. ...+...++..+ |
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~-~~~~~~~~~s~~~i~~~l~~~g~~~~~ 112 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIE-EYKRSSPGMFSWEIREKLIREGVCDRS 112 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHH-HTTTTCTTCCHHHHHHHHHHTSSSCST
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHH-HHHHhCcchHHHHHHHHHHHcCCcccc
Confidence 345677788999999998888765322 11111112 33456664433332 2232 346788888888 7
Q ss_pred --cChhhHHHHHHH
Q 013572 161 --VTESVTRFCVKQ 172 (440)
Q Consensus 161 --vs~sTv~~~v~~ 172 (440)
+|.+||++++++
T Consensus 113 ~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 113 TAPSVSAISRLVRG 126 (128)
T ss_dssp TCCCHHHHHHHC--
T ss_pred CCcCHHHHHHHHHh
Confidence 599999988764
No 105
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=54.98 E-value=5.5 Score=41.89 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=40.6
Q ss_pred CCCHHHHHhhheeecc---CCCchhhhhhhhccChhhHHHHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLV---NGSTYSEIATRFEVTESVTRFCVKQLCRVLCT 179 (440)
Q Consensus 132 ~is~e~~L~i~L~~La---~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~ 179 (440)
.+|+.++-.+.|+|+- .|.++.+||..+|||.+||..+.++....|-.
T Consensus 550 ~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~ 600 (613)
T 3iyd_F 550 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 (613)
T ss_dssp SSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTS
T ss_pred cCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 5899999999998863 68899999999999999999988877665443
No 106
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=54.72 E-value=12 Score=30.12 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=30.8
Q ss_pred CCHHH-HHhhheeeccC-CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVN-GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~-g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+.-.. +.+..+++..++++++||++.+.+..+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 55443 44444544432 679999999999999999998776654
No 107
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=54.29 E-value=5.6 Score=34.74 Aligned_cols=64 Identities=16% Similarity=0.046 Sum_probs=43.7
Q ss_pred CCHHHHHhhheeeccC-------CCchhhhhhhhccChhhHHHHHHHHHHH-HHHhhhhhhcCCChhhHHHH
Q 013572 133 LSADIRLGIGLFRLVN-------GSTYSEIATRFEVTESVTRFCVKQLCRV-LCTNFRFWVAFPGPEELGLI 196 (440)
Q Consensus 133 is~e~~L~i~L~~La~-------g~s~~~la~~Fgvs~sTv~~~v~~v~~~-i~~~l~~~I~~P~~~~~~~~ 196 (440)
.+++++++-+|..++. ..+..++|...|+++.|++|+++++.+. +.+.-+..|..++.+.++++
T Consensus 140 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~ 211 (216)
T 4ev0_A 140 EEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALLEEI 211 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHH
Confidence 4678999999876642 3478899999999999999998887652 11222334555555444443
No 108
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=54.04 E-value=11 Score=30.77 Aligned_cols=43 Identities=7% Similarity=0.032 Sum_probs=28.1
Q ss_pred CCCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+- +...|+. ..+.+..+|+..+|++++||++.+.+..+
T Consensus 34 ~lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 34 DLTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3555444 3333433 34789999999999999999998887664
No 109
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=54.02 E-value=11 Score=34.05 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHhccccccc-CCCCCCCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 105 MSSSTFRWLSGLLEPLLDCR-DPVGLPLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 105 ms~~tF~~L~~~L~~~l~~~-~~~~r~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
|++...+.+.+.|+..|... -+.| ..+|. -++++..||||+++|.+.+....
T Consensus 1 m~~~l~~~v~~~L~~~I~~g~l~pG--~~Lps----------------E~~La~~lgVSRtpVREAL~~L~ 53 (239)
T 2di3_A 1 MSVKAHESVMDWVTEELRSGRLKIG--DHLPS----------------ERALSETLGVSRSSLREALRVLE 53 (239)
T ss_dssp -CHHHHHHHHHHHHHHHHHTSSCTT--CBCCC----------------HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCC--CcCCC----------------HHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666677777766654321 1111 12332 35789999999999987766544
No 110
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=53.91 E-value=11 Score=30.76 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=30.7
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++.+-..+...+-..+.+..+|+..++++++|+++++.+..+
T Consensus 28 ~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 28 DLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp TCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555443333223344688999999999999999998776554
No 111
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=53.54 E-value=13 Score=31.09 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=30.3
Q ss_pred CCCHHHHHhh-heeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIRLGI-GLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~L~i-~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+-..+ .|+. ..+.+..+|+..+|++++||++++.+..+
T Consensus 43 glt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 43 EISLPQFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp TCCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443333 3333 34788999999999999999998776553
No 112
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=53.39 E-value=7.5 Score=29.97 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=34.5
Q ss_pred CCCCHHHHHhhheeec--cCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRL--VNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 131 ~~is~e~~L~i~L~~L--a~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..+++++.+.+.+.+- ..|...++|+...+++.+||.+++.....
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4577777666655444 23899999999999999999998776543
No 113
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=53.07 E-value=12 Score=27.58 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=23.3
Q ss_pred CCCchhhhhhhh-----ccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRF-----EVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~F-----gvs~sTv~~~v~~v~~ 175 (440)
...+..+|+..+ ++|.+||++.+..+.+
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 356788999999 9999999998877664
No 114
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=53.04 E-value=7.7 Score=33.94 Aligned_cols=40 Identities=15% Similarity=0.048 Sum_probs=33.6
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v 170 (440)
..++|-++....-..+..|.+...|+..+|+|+++|++++
T Consensus 34 edL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~L 73 (178)
T 1r71_A 34 NELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHV 73 (178)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 4678877777776777789999999999999999998764
No 115
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=52.99 E-value=7.6 Score=31.86 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=23.5
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+||..+|++++||++.+.....
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4678899999999999999988776543
No 116
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=52.82 E-value=12 Score=30.56 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=31.1
Q ss_pred CCCHHHHH-hhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIRL-GIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~L-~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+-. ...|+. ..+.+..+++..++++++||++.+.+..+
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHH-SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46655443 333433 34788999999999999999998877664
No 117
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=52.78 E-value=8.9 Score=28.31 Aligned_cols=42 Identities=7% Similarity=0.171 Sum_probs=30.7
Q ss_pred CCH-HHHHhhheeeccCCCchhhhhhhhc----cChhhHHHHHHHHHH
Q 013572 133 LSA-DIRLGIGLFRLVNGSTYSEIATRFE----VTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~-e~~L~i~L~~La~g~s~~~la~~Fg----vs~sTv~~~v~~v~~ 175 (440)
+++ +..+..+||. ..+.+..+|+..++ ++.+||++++....+
T Consensus 7 lt~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 7 ISDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp CCHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 554 4455556666 55788999999997 689999988776554
No 118
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=52.78 E-value=8.4 Score=33.98 Aligned_cols=42 Identities=21% Similarity=0.140 Sum_probs=36.5
Q ss_pred CCCCHHHHHhhheeeccCC--CchhhhhhhhccChhhHHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNG--STYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g--~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+++|.-++=--.++.|..| .+..++|..+|||++.|+|++.-
T Consensus 22 rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~ 65 (189)
T 3mky_B 22 RPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINT 65 (189)
T ss_dssp -CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHH
Confidence 5789889888888888777 89999999999999999998763
No 119
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=52.77 E-value=12 Score=30.44 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=30.6
Q ss_pred CCCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+- +...|+. ..+.+..+|+..++++++|+++++.+..+
T Consensus 33 glt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 33 DLTYTGYIVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp TCCHHHHHHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3555443 3334433 45678999999999999999998877654
No 120
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=52.22 E-value=8.3 Score=31.19 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCHH-HHHhhheeecc-CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSAD-IRLGIGLFRLV-NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e-~~L~i~L~~La-~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++. ..+...|+.-. .+.+..+|+..++++++|+++++.+..+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4443 33444444332 3778999999999999999998777654
No 121
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=52.08 E-value=10 Score=30.80 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=31.4
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+-..+...+-..+.+..+|+..++++++|+++++.+..+
T Consensus 34 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 34 DVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 46655543333222236789999999999999999998777654
No 122
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=52.04 E-value=12 Score=30.83 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=30.9
Q ss_pred CCCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++.+- +...|+. ..+.+..+|+..++++++||++++.+..+
T Consensus 44 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4665544 3334433 45678999999999999999998776553
No 123
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=51.98 E-value=3 Score=36.74 Aligned_cols=32 Identities=16% Similarity=-0.033 Sum_probs=0.0
Q ss_pred eeeccCCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 143 LFRLVNGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 143 L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
..++..|.+...|+..+|+|.+|+++++++.-
T Consensus 152 ~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~ 183 (193)
T 3plo_X 152 GRLLAQGIPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp --------------------------------
T ss_pred HHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhH
Confidence 34456899999999999999999999876543
No 124
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=51.97 E-value=11 Score=30.20 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=30.6
Q ss_pred CCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+. ..+.+..+++..+|++++||++.+.+..+
T Consensus 36 l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 36 LTPTQWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp CCHHHHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55444 34444443 34789999999999999999998777654
No 125
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=51.67 E-value=9.5 Score=29.84 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=28.8
Q ss_pred HHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..++...| -..+.+..+|+..+|+|++||+++++...+
T Consensus 23 r~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 23 RWEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444444 345678999999999999999999887654
No 126
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=51.65 E-value=7.5 Score=34.18 Aligned_cols=80 Identities=13% Similarity=-0.019 Sum_probs=47.7
Q ss_pred hhHHHhhcCCCHHHHHHHHHHhcccccccCCCC-CCCCCCHHHHHhhheeeccC-----------CCchhhhhhhhccCh
Q 013572 96 PDSFRNSFKMSSSTFRWLSGLLEPLLDCRDPVG-LPLNLSADIRLGIGLFRLVN-----------GSTYSEIATRFEVTE 163 (440)
Q Consensus 96 ~~~F~~~fRms~~tF~~L~~~L~~~l~~~~~~~-r~~~is~e~~L~i~L~~La~-----------g~s~~~la~~Fgvs~ 163 (440)
.+.|...+.-.+..-..++..+...+....... .-...+++++++-+|..++. ..+..++|...|+++
T Consensus 113 ~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr 192 (227)
T 3dkw_A 113 NKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQP 192 (227)
T ss_dssp SHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCH
Confidence 345666555555544444444333221100000 00124678899988766543 346789999999999
Q ss_pred hhHHHHHHHHHH
Q 013572 164 SVTRFCVKQLCR 175 (440)
Q Consensus 164 sTv~~~v~~v~~ 175 (440)
.|++++++++.+
T Consensus 193 ~tvsR~l~~l~~ 204 (227)
T 3dkw_A 193 ETFSRIMHRLGD 204 (227)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887664
No 127
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=50.91 E-value=12 Score=30.50 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=31.0
Q ss_pred CCCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+ .+...|+. ..+.+..+++..++++++||++.+.+..+
T Consensus 39 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 39 PITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp SSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 455544 34444444 34789999999999999999998776654
No 128
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=50.89 E-value=11 Score=30.52 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=24.0
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+++..++++++||++++.+..+
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 4678999999999999999998777654
No 129
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=50.31 E-value=9 Score=34.92 Aligned_cols=43 Identities=21% Similarity=0.144 Sum_probs=35.1
Q ss_pred CCHHHHHhhheeeccCC-------------CchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVNG-------------STYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La~g-------------~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++++++-+|..++.. .+..+||...|+++.|++|+++++.+
T Consensus 188 ~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 57899999988877542 35689999999999999998877654
No 130
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=50.17 E-value=14 Score=29.75 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=30.5
Q ss_pred CCCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+- +...|+. ..+.+..+++...|++++||++++.+..+
T Consensus 31 ~lt~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 31 DITAAQFKVLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp TSCHHHHHHHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 3555443 3333432 34678999999999999999998777654
No 131
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=50.17 E-value=11 Score=29.42 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=22.9
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..+..+|+..+|+|++||++.+.....
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468889999999999999988776554
No 132
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=50.13 E-value=11 Score=31.79 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=32.0
Q ss_pred CCCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+ .+...|+....+.+..+|+..++++++||++.+.+..+
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 466544 34444444455689999999999999999998776554
No 133
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=50.04 E-value=16 Score=30.01 Aligned_cols=42 Identities=14% Similarity=-0.010 Sum_probs=29.5
Q ss_pred CCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+- +...|+. ..+.+..+|+..+|++++||++++.+..+
T Consensus 41 lt~~~~~iL~~l~~-~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 41 LRVPEWRVLACLVD-NDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp CCHHHHHHHHHHSS-CSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 554443 3333432 34678999999999999999998776554
No 134
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=49.56 E-value=9.2 Score=34.43 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=36.6
Q ss_pred CCCHHHHHhhheeeccC--------------CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVN--------------GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~--------------g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..+++++++-+|..++. ..+..+||...|+++.|++|+++++.+
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~ 203 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKR 203 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 36889999999977642 347889999999999999999887765
No 135
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=49.51 E-value=6.2 Score=28.45 Aligned_cols=21 Identities=5% Similarity=0.050 Sum_probs=19.3
Q ss_pred CchhhhhhhhccChhhHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v 170 (440)
.++..+|...||++++|++++
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999999875
No 136
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=49.49 E-value=13 Score=31.04 Aligned_cols=42 Identities=19% Similarity=0.035 Sum_probs=29.8
Q ss_pred CCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+. ..+.+..+|+..+|++++||++++.+..+
T Consensus 50 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 50 LSTAKMRALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp CCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 55443 33344433 34678999999999999999998776554
No 137
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=49.48 E-value=13 Score=30.16 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=29.8
Q ss_pred CCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+. ..+.+..+++..++++++||++++.+..+
T Consensus 31 l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 31 ITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp CCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 44433 33344443 44678999999999999999998776554
No 138
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=49.46 E-value=13 Score=30.61 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=30.2
Q ss_pred CCCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+- +...|+ -..+.+..+|+..++++++||++++....+
T Consensus 38 ~lt~~q~~iL~~l~-~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 38 GITYSQYLVMLTLW-EENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp TCCHHHHHHHHHHH-HSSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3554443 333333 246778999999999999999998777654
No 139
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=49.23 E-value=10 Score=27.75 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=19.2
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+...+|..+|||++||+++++.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 3789999999999999998753
No 140
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=49.00 E-value=13 Score=34.65 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=40.7
Q ss_pred CCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 133 is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
+|+..|-++.|+++ .|.++.++|...|++.+||...+.+....+...+.
T Consensus 112 Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 112 IAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp HSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 67788887777766 68999999999999999999888888777766654
No 141
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=48.75 E-value=11 Score=30.64 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=28.4
Q ss_pred HHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+..+...|+. ..+.+..+++..++++++||++.+.+..+
T Consensus 31 ~~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 31 QYLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp HHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 3334444443 34678999999999999999988776554
No 142
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=48.73 E-value=9.7 Score=27.80 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=20.9
Q ss_pred cCCCchhhhhhhhccChhhHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..| +..++|...|||++|++++.+
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHH
Confidence 347 899999999999999998755
No 143
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=48.63 E-value=13 Score=29.88 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=23.5
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+++..++++++||++.+.+..+
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678899999999999999988776554
No 144
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=48.53 E-value=9.1 Score=29.13 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=24.2
Q ss_pred CCchhhhhhhhccChhh-HHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESV-TRFCVKQLCRV 176 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sT-v~~~v~~v~~~ 176 (440)
+.+..+|+..++++++| +++.+.+..+.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 57899999999999999 99988776653
No 145
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=48.36 E-value=12 Score=30.58 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=30.5
Q ss_pred CCCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++.+- +...|+. ..+.+..+++..++++++||++.+.+..+
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 37 NITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 4665443 3334433 34678999999999999999998776654
No 146
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=48.31 E-value=11 Score=30.39 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=31.2
Q ss_pred CCCHHH-HHhhheeecc-CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADI-RLGIGLFRLV-NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~-~L~i~L~~La-~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++.+ .+...|+.-. .+.+..+|+..++++++|+++++.+..+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355544 3444454421 5678999999999999999998877654
No 147
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.22 E-value=12 Score=30.50 Aligned_cols=44 Identities=20% Similarity=0.053 Sum_probs=30.5
Q ss_pred CCCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++.+ .+...|+.-..+.+..+++..+|++++||++++.+...
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 344433 33334433245779999999999999999998776654
No 148
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=48.13 E-value=12 Score=29.37 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.1
Q ss_pred chhhhhhhhccChhhHHHHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.++++..||||++||++.+.....
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~~ 69 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLES 69 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999988776553
No 149
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=48.01 E-value=14 Score=30.31 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+. ..+.+..+|+..+|++++|+++.+.+...
T Consensus 38 lt~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 38 VTVGQRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp CCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55443 33334433 34778999999999999999988776553
No 150
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=47.97 E-value=12 Score=30.07 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=30.4
Q ss_pred CCCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++.+ .+...|+. ..+.+..+++..++++++||++.+.+..+
T Consensus 30 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 30 DISYVQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 355444 34344433 34678999999999999999998777654
No 151
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=47.86 E-value=12 Score=33.24 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=36.4
Q ss_pred CCCHHHHHhhheeeccCC----------CchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNG----------STYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g----------~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..++++|++-+|..++.. .+..+||...|+++.||+|+++++.+
T Consensus 151 ~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 151 AQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp CCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 478899999999887642 34678999999999999999887654
No 152
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=47.84 E-value=14 Score=30.42 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+. ..+.+..+|+...+++++||++++.+..+
T Consensus 39 lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 39 LTIQQLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp CCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55544 34444443 34678999999999999999998776554
No 153
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=47.71 E-value=12 Score=30.77 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=29.6
Q ss_pred CCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+.-..+.+..+|+..++++++||++++.+..+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 55433 33333433333568999999999999999998776553
No 154
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=47.43 E-value=12 Score=30.41 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=29.2
Q ss_pred CCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+. ..+.+..+++..++++++||++.+.+..+
T Consensus 35 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 35 LTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp CCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 45433 33333332 34578999999999999999998776554
No 155
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=47.15 E-value=8.7 Score=26.45 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=21.7
Q ss_pred cCCCchhhhhhhhccChhhHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..|.+..++|...|+|++|++++.+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688899999999999999998744
No 156
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=47.07 E-value=17 Score=30.18 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=29.7
Q ss_pred CCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+. ..+.+..+|+..+|++++||++++.+..+
T Consensus 47 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 47 MAIPEWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp CCHHHHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44433 34444443 45678899999999999999998776554
No 157
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=46.97 E-value=15 Score=29.15 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.7
Q ss_pred chhhhhhhhccChhhHHHHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.++++..||||++||.+.+.....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLD 59 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999988776654
No 158
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=46.72 E-value=14 Score=27.60 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=20.9
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
..+..+|+..|+||.+||.+-+.+..
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~Le 41 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQLE 41 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35677999999999999998765544
No 159
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=46.02 E-value=15 Score=30.12 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=29.7
Q ss_pred CCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+- +...| -..+.+..+|+..+|++++||++.+....+
T Consensus 36 lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 36 ISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp CCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444333 33344 456778999999999999999998776654
No 160
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=45.75 E-value=60 Score=26.51 Aligned_cols=79 Identities=13% Similarity=0.012 Sum_probs=47.8
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhccc--ccccCCCCC-CCCCCHHHHHhhheeecc--CCCchhhhhhhh--------c
Q 013572 94 QLPDSFRNSFKMSSSTFRWLSGLLEPL--LDCRDPVGL-PLNLSADIRLGIGLFRLV--NGSTYSEIATRF--------E 160 (440)
Q Consensus 94 ~~~~~F~~~fRms~~tF~~L~~~L~~~--l~~~~~~~r-~~~is~e~~L~i~L~~La--~g~s~~~la~~F--------g 160 (440)
.+-.+--..|++++.|+...+...... +......++ +..++.+..-.+. .++. ...+...++..+ |
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~-~~~~~~~~~s~~~i~~~l~~~~~~~~g 127 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIA-EYKRQNPTMFAWEIRDRLLAERVCDND 127 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHH-HHHHHCTTCCHHHHHHHHHHTTSSCTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHH-HHHHhCcchhHHHHHHHHHHhcccccC
Confidence 345667788999999999888765332 111111222 3456665443332 2222 246777888776 6
Q ss_pred --cChhhHHHHHHHH
Q 013572 161 --VTESVTRFCVKQL 173 (440)
Q Consensus 161 --vs~sTv~~~v~~v 173 (440)
+|.+||++++++.
T Consensus 128 ~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 128 TVPSVSSINRIIRTK 142 (149)
T ss_dssp TSCCHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHHH
Confidence 8999999887643
No 161
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=45.68 E-value=22 Score=29.57 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.9
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
...++.++|..+|+|++||++.+++..+
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999998777654
No 162
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=45.66 E-value=7.3 Score=31.45 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+++..+|+|++||+++++...+
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999999887654
No 163
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=45.44 E-value=15 Score=32.19 Aligned_cols=81 Identities=15% Similarity=0.054 Sum_probs=51.3
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhcccccccCCCC-CCCCCCHHHHHhhheeecc--------------CCCchhhhhhhh
Q 013572 95 LPDSFRNSFKMSSSTFRWLSGLLEPLLDCRDPVG-LPLNLSADIRLGIGLFRLV--------------NGSTYSEIATRF 159 (440)
Q Consensus 95 ~~~~F~~~fRms~~tF~~L~~~L~~~l~~~~~~~-r~~~is~e~~L~i~L~~La--------------~g~s~~~la~~F 159 (440)
+-+.|...+.-.+..-..++..+...+....... .-...+++++++-+|..++ -..+..++|...
T Consensus 108 ~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~l 187 (227)
T 3d0s_A 108 DRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLV 187 (227)
T ss_dssp EHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHH
T ss_pred eHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHh
Confidence 4456776666666655555544433221110000 0012578999999887764 235778999999
Q ss_pred ccChhhHHHHHHHHHH
Q 013572 160 EVTESVTRFCVKQLCR 175 (440)
Q Consensus 160 gvs~sTv~~~v~~v~~ 175 (440)
|+++.|++|+++++.+
T Consensus 188 g~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 188 GASRETVNKALADFAH 203 (227)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999888764
No 164
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=45.00 E-value=10 Score=27.42 Aligned_cols=26 Identities=15% Similarity=-0.107 Sum_probs=22.7
Q ss_pred eccCCCchhhhhhhhccChhhHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v 170 (440)
+-..|.+..++|...|||.+|++++-
T Consensus 20 R~~~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 20 RKKLSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 45679999999999999999999863
No 165
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=44.85 E-value=14 Score=28.44 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=24.1
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+++..+|+|++||++.++...+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999998887654
No 166
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=44.83 E-value=13 Score=30.60 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=29.5
Q ss_pred CCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+- +...|+. ..+.+..+++..++++++||++.+.+..+
T Consensus 35 l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 35 VTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 554443 3334432 34678999999999999999988776553
No 167
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=44.06 E-value=14 Score=29.52 Aligned_cols=28 Identities=14% Similarity=0.030 Sum_probs=23.1
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+|+..+|+|++||++.++...+
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3567889999999999999998776543
No 168
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=44.04 E-value=12 Score=29.95 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=24.7
Q ss_pred cCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..+.+..+|+..+|+|++||++.++...+
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 45668999999999999999999887654
No 169
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=43.66 E-value=13 Score=31.34 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=28.7
Q ss_pred HHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHH
Q 013572 137 IRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRV 176 (440)
Q Consensus 137 ~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~ 176 (440)
.++...|. ..+.+..+|+..+|++++||++.++...++
T Consensus 61 ~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 61 RRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp HHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444443 456789999999999999999998876653
No 170
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=43.61 E-value=17 Score=29.50 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.4
Q ss_pred chhhhhhhhccChhhHHHHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+..+++..+|++++|+++.+....+
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHH
Confidence 8999999999999999998777654
No 171
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=43.19 E-value=11 Score=26.25 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=21.9
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
-..|.+..++|...|||++|++++.+
T Consensus 11 ~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 11 IQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688899999999999999998743
No 172
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=43.18 E-value=23 Score=31.10 Aligned_cols=63 Identities=16% Similarity=-0.042 Sum_probs=42.4
Q ss_pred CCHHHHHhhheeecc-------------CCCchhhhhhhhccChhhHHHHHHHHHHH-HHHhhhhhhcCCChhhHHH
Q 013572 133 LSADIRLGIGLFRLV-------------NGSTYSEIATRFEVTESVTRFCVKQLCRV-LCTNFRFWVAFPGPEELGL 195 (440)
Q Consensus 133 is~e~~L~i~L~~La-------------~g~s~~~la~~Fgvs~sTv~~~v~~v~~~-i~~~l~~~I~~P~~~~~~~ 195 (440)
.++++|++.+|..|+ -..+..++|...|+++.|++|+++++.+. +.+.-+..|...+.+.+.+
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~ 227 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQK 227 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEeCHHHHHH
Confidence 578999999885542 23577899999999999999998887642 1122123444555544443
No 173
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=43.11 E-value=23 Score=29.18 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=23.3
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
...++.++|..+|+|++||++.+++..+
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468999999999999999988776543
No 174
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=43.11 E-value=12 Score=26.19 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=21.9
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
...|.+..++|...|||++|++++.+
T Consensus 13 ~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 13 IALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34678899999999999999998743
No 175
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=42.95 E-value=16 Score=30.20 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=23.9
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+|+..++++++||++.+.+..+
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3678999999999999999998776654
No 176
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=42.93 E-value=17 Score=32.07 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=45.0
Q ss_pred HHHhhcCCCHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHhhhee----eccCCCchhhhhhhhccChhhHHHHHHHH
Q 013572 98 SFRNSFKMSSSTFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLF----RLVNGSTYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 98 ~F~~~fRms~~tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~----~La~g~s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
.|.+.++++.+.-..-...++......-. .+.+|..-.+.+|+ .++...+..+++..+||+..|+.++.+++
T Consensus 108 r~~~~l~l~~~~~~~A~~i~~~~~~~~l~----~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l 183 (207)
T 1c9b_A 108 RFCSNLCLPKQVQMAATHIARKAVELDLV----PGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 183 (207)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHTTCS----TTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHcCcc----CCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 45556778765432222222222111111 22445444333333 34456678899999999999999888877
Q ss_pred HHHHHHhh
Q 013572 174 CRVLCTNF 181 (440)
Q Consensus 174 ~~~i~~~l 181 (440)
.+.+....
T Consensus 184 ~~~l~~~~ 191 (207)
T 1c9b_A 184 YPRAPDLF 191 (207)
T ss_dssp GGGHHHHS
T ss_pred HHHHHHhC
Confidence 76554433
No 177
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=42.90 E-value=10 Score=32.89 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCCCCCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHH
Q 013572 126 PVGLPLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 126 ~~~r~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..|++++..++ ++ + .++..|.++..|+..+|+|.+|++++++
T Consensus 139 ~~Gr~~~~~~~-~i--~-~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 139 VFGRKRKIDRD-AV--L-NMWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp CCSSCCCSCHH-HH--H-HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCCCCCHH-HH--H-HHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34555555553 22 2 3456899999999999999999998864
No 178
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=42.87 E-value=19 Score=28.93 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.6
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+++..+|+|++||++.++...+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999999887765
No 179
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=42.75 E-value=14 Score=30.79 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=29.1
Q ss_pred HHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+..+...|+. ..+.+..+|+..++++++|+++++.+..+
T Consensus 52 q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 52 QFPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp THHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444433 35788999999999999999998777654
No 180
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=42.63 E-value=14 Score=30.27 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=24.2
Q ss_pred CCHHH-HHhhheeecc-CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLV-NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La-~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+.-. .+.+..+|+..++++++|+++++.+..+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 44433 3333443322 5778899999999999999998887654
No 181
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=42.60 E-value=13 Score=29.58 Aligned_cols=43 Identities=9% Similarity=0.106 Sum_probs=31.8
Q ss_pred CCCHHH-HHhhheeeccCCCchhhhhhhhc----cChhhHHHHHHHHHH
Q 013572 132 NLSADI-RLGIGLFRLVNGSTYSEIATRFE----VTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~-~L~i~L~~La~g~s~~~la~~Fg----vs~sTv~~~v~~v~~ 175 (440)
.+++.+ .+..+|+. ..+.+..+|+..++ ++++||++++....+
T Consensus 7 ~lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 7 EISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp CCCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 355443 44445555 56788999999999 889999999887765
No 182
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=42.55 E-value=16 Score=25.31 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=19.8
Q ss_pred CCchhhhhhhh-----ccChhhHHHHHH
Q 013572 149 GSTYSEIATRF-----EVTESVTRFCVK 171 (440)
Q Consensus 149 g~s~~~la~~F-----gvs~sTv~~~v~ 171 (440)
..+..+++..+ +||.+||++.+.
T Consensus 19 ~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 19 IETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 45677899999 999999999877
No 183
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=42.53 E-value=20 Score=32.83 Aligned_cols=43 Identities=19% Similarity=0.109 Sum_probs=33.4
Q ss_pred CCHHHHHhhheeecc---CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLV---NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La---~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++.-++..-.|..|+ .+.+..+|+...|+++||++++++...+
T Consensus 10 v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~ 55 (257)
T 2g7u_A 10 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK 55 (257)
T ss_dssp CHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445555555566665 3578999999999999999999988765
No 184
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=42.53 E-value=16 Score=34.74 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=28.3
Q ss_pred hheeeccCCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 141 IGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 141 i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
++..|+..+.+..+||..||||++||+|-+.+.-
T Consensus 13 ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~ 46 (315)
T 2w48_A 13 IAQLYYEQDMTQAQIARELGIYRTTISRLLKRGR 46 (315)
T ss_dssp HHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4455667789999999999999999999877653
No 185
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=42.43 E-value=11 Score=27.65 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=21.6
Q ss_pred cCCCchhhhhhhhccChhhHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v 170 (440)
..|.+..+||...|||++|++++.
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 678999999999999999999763
No 186
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=42.40 E-value=13 Score=32.85 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=34.7
Q ss_pred CHH-HHHhhheeeccC-------------CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 134 SAD-IRLGIGLFRLVN-------------GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 134 s~e-~~L~i~L~~La~-------------g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++. ++++-+|..++. ..+..+||...|+++.|++|+++++.+
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 201 (231)
T 3e97_A 146 QNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 345 899999888764 357889999999999999999887764
No 187
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=42.31 E-value=21 Score=29.56 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=23.3
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
...++.+||..+|+|++||++.+++..+
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999988766543
No 188
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=42.31 E-value=13 Score=33.54 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=32.3
Q ss_pred HHHHHhhheeeccC-CCch--hhhhhhhccChhhHHHHHHHHHH
Q 013572 135 ADIRLGIGLFRLVN-GSTY--SEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 135 ~e~~L~i~L~~La~-g~s~--~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.++.+.-+|+.|.. |.+. .+|+..++++++|+++.+++..+
T Consensus 7 ~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~ 50 (230)
T 1fx7_A 7 TTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMER 50 (230)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46667777777753 6666 99999999999999998887653
No 189
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=42.28 E-value=5.3 Score=35.14 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=0.5
Q ss_pred CCHHHHHhhheeeccC-------CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVN-------GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La~-------g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.++++|++.+|..++. ..+..++|...|+++.|++|+++++.+
T Consensus 141 ~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 190 (213)
T 1o5l_A 141 KTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELER 190 (213)
T ss_dssp C-------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5678999999888763 357889999999999999999888764
No 190
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=42.19 E-value=13 Score=27.51 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=22.4
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
-..|.+..++|...|||++|++++.+
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45688999999999999999998754
No 191
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=41.85 E-value=25 Score=28.99 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..++.++|..+|+|++||++.+++..+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999998776654
No 192
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=41.72 E-value=11 Score=35.55 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=19.4
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+.++||...|||.+|||++++.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 4679999999999999998773
No 193
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=41.71 E-value=12 Score=26.58 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=30.8
Q ss_pred cCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhhhhhcCCChhhHHHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPEELGLISKSF 200 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~~~I~~P~~~~~~~~~~~f 200 (440)
..|.+..++|...|||++|++++.+. -.-|+.+.+..++..|
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~g------------~~~~~~~~l~~ia~~l 60 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCTN------------DVQPSLETLFDIAEAL 60 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHTT------------SSCCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC------------CCCCCHHHHHHHHHHH
Confidence 56889999999999999999987442 1235556666666555
No 194
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=41.61 E-value=20 Score=29.19 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..++.+++..+|+|++|+++.+++..+
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999988776654
No 195
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=41.59 E-value=7.8 Score=27.17 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=19.2
Q ss_pred CCchhhhhhhhccChhhHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v 170 (440)
+.+...+|...|||++||+++.
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 4578999999999999999873
No 196
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=41.58 E-value=11 Score=29.01 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=25.7
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRV 176 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~ 176 (440)
.+.+..+++..+|+|++|+++.++...++
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45788999999999999999999987776
No 197
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=41.56 E-value=12 Score=27.24 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.6
Q ss_pred cCCCchhhhhhhhccChhhHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..|.+..++|...|||++|++++.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4588899999999999999998743
No 198
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=41.47 E-value=17 Score=29.49 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.7
Q ss_pred chhhhhhhhccChhhHHHHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.++++..||||++||.+.+.....
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~~ 63 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELER 63 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999988776654
No 199
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=41.45 E-value=19 Score=30.31 Aligned_cols=42 Identities=21% Similarity=0.115 Sum_probs=30.1
Q ss_pred CCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+. ..+.+..+|+...|++++||++++.+..+
T Consensus 43 lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 43 ITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp CCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 55444 34444443 34789999999999999999998776543
No 200
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=41.29 E-value=14 Score=27.87 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+++..+|++++|+++.++...+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678999999999999999998887655
No 201
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=41.18 E-value=13 Score=25.69 Aligned_cols=25 Identities=4% Similarity=-0.079 Sum_probs=21.4
Q ss_pred cCCCchhhhhhhhccChhhHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..|.+..++|...|+|++|++++.+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4578899999999999999988743
No 202
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=41.11 E-value=17 Score=29.96 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.2
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.|.+..++|..||+|..+|++|+++.-.
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4999999999999999999999887654
No 203
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=40.66 E-value=28 Score=28.89 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
...++.++|..+|+|++||++.+++..+
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999988777654
No 204
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=40.58 E-value=16 Score=30.42 Aligned_cols=42 Identities=26% Similarity=0.093 Sum_probs=29.9
Q ss_pred CCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+- +...|+. ..+.+..+|+..+|++++|+++++.+..+
T Consensus 51 lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 51 LPTPKLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 454433 3334433 34788999999999999999998776554
No 205
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=40.58 E-value=9.9 Score=27.82 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.9
Q ss_pred eeccCCCchhhhhhhhccChhhHHHHHH
Q 013572 144 FRLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 144 ~~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
++...|.+..++|...|||++|++++.+
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3566789999999999999999998744
No 206
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=40.30 E-value=28 Score=30.37 Aligned_cols=77 Identities=22% Similarity=0.153 Sum_probs=47.3
Q ss_pred HHHhhcCCCHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHhhheee----ccCCCchhhhhhhhccChhhHHHHHHHH
Q 013572 98 SFRNSFKMSSSTFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLFR----LVNGSTYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 98 ~F~~~fRms~~tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~~----La~g~s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
.|-..++++.+.-..-...++......-..| -+|..-.+.+|+. ++...+..+++...||++.|+.+..+++
T Consensus 114 r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~g----r~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l 189 (200)
T 1ais_B 114 KFADELGLSEKVRRRAIEILDEAYKRGLTSG----KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 189 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHTTCCTT----SCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHcCcccC----CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4555678887654444444433222111222 4555444444433 4456789999999999999999988887
Q ss_pred HHHHH
Q 013572 174 CRVLC 178 (440)
Q Consensus 174 ~~~i~ 178 (440)
.+.+.
T Consensus 190 ~~~l~ 194 (200)
T 1ais_B 190 VEKLK 194 (200)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 77653
No 207
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=40.17 E-value=16 Score=31.55 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCHHH-HHhhheeec-cCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRL-VNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~L-a~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+.. ..+.+..+|+..+|++++||++++.....
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44443 444455544 35789999999999999999988776543
No 208
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=40.16 E-value=16 Score=30.21 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=30.9
Q ss_pred CCHHH-HHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADI-RLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~-~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+ .+...|+.-..+.+..+|+..+|++++||++.+.+..+
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 44433 44444533445788999999999999999998777654
No 209
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=40.14 E-value=14 Score=32.08 Aligned_cols=44 Identities=27% Similarity=0.338 Sum_probs=35.5
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
.+++.+.- .|.+|+.|.+..+|+...++|..||..++.+..+-+
T Consensus 154 ~Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl 197 (215)
T 1a04_A 154 QLTPRERD--ILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKM 197 (215)
T ss_dssp GSCHHHHH--HHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHH--HHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 36665543 456788999999999999999999999988877765
No 210
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=40.09 E-value=10 Score=29.80 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=22.3
Q ss_pred eccCCCchhhhhhhhccChhhHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFC 169 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~ 169 (440)
+.+.|.+..++|...|||++|++++
T Consensus 45 R~~~glTQ~eLA~~~gvs~~~is~~ 69 (101)
T 4ghj_A 45 RLNRDLTQSEVAEIAGIARKTVLNA 69 (101)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHcCCCHHHHHHHcCCCHHHHHHH
Confidence 4567999999999999999999986
No 211
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=40.09 E-value=16 Score=27.97 Aligned_cols=25 Identities=4% Similarity=0.231 Sum_probs=20.4
Q ss_pred CCchhhhhhhhccChhhHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
..+..+|+..|+||.+||.+-+.+.
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 4567899999999999998875543
No 212
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=39.79 E-value=17 Score=25.83 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=18.7
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+..+++...|+|++|+++.+++
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 4568999999999999988764
No 213
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=39.64 E-value=21 Score=32.80 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=34.5
Q ss_pred CCCHHHHHhhheeecc---CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLV---NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~L~i~L~~La---~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+..-++..-.|..|+ .+.+..+|+...|+++||++++++...+
T Consensus 18 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~ 64 (260)
T 2o0y_A 18 GVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA 64 (260)
T ss_dssp CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3555566666666665 3688999999999999999999887764
No 214
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=39.51 E-value=26 Score=28.95 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=23.7
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
...++.+||..+|+|++||++.+++..+
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999988776653
No 215
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=39.33 E-value=11 Score=35.45 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.7
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+.++||...|||.+|||++++.
T Consensus 4 ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 4 TIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 5789999999999999998764
No 216
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=39.18 E-value=18 Score=32.76 Aligned_cols=41 Identities=22% Similarity=0.043 Sum_probs=32.3
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..+++.++.......+..|.+...||..+|+|+++|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45777666655544557899999999999999999988764
No 217
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=38.87 E-value=15 Score=26.24 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=22.2
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
...|.+..++|...|||++|++++.+
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 20 TQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 34688999999999999999998754
No 218
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=38.85 E-value=15 Score=25.93 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=21.4
Q ss_pred cCCCchhhhhhhhccChhhHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..|.+..++|...|+|++|++++.+
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4688899999999999999988643
No 219
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=38.80 E-value=16 Score=26.08 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=21.6
Q ss_pred cCCCchhhhhhhhccChhhHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..|.+..++|...|||++|++++.+
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688899999999999999998743
No 220
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=38.79 E-value=17 Score=26.12 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=19.8
Q ss_pred CchhhhhhhhccChhhHHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
.++...|..+||++++||+.++
T Consensus 14 ~s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 14 FGQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3899999999999999999863
No 221
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=38.78 E-value=22 Score=29.02 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=18.6
Q ss_pred chhhhhhhhccChhhHHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
+.++++..||||++||.+.+...
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L 52 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLL 52 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 45789999999999998765543
No 222
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=38.46 E-value=17 Score=26.75 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.5
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
...|.+..++|...|||++|++++.+
T Consensus 22 ~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 22 QQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 35688899999999999999998754
No 223
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=38.21 E-value=20 Score=29.09 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=20.4
Q ss_pred chhhhhhhhccChhhHHHHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.++++..||||++||.+.+.....
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEA 61 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999987776543
No 224
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=38.05 E-value=17 Score=30.56 Aligned_cols=44 Identities=20% Similarity=0.064 Sum_probs=28.5
Q ss_pred CCCHHH-HHhhheeec-cCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADI-RLGIGLFRL-VNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~-~L~i~L~~L-a~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++++.+ .+...|+.. ..+.+..+|+..++++++||++++....+
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 355544 344444444 35889999999999999999998776553
No 225
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=37.99 E-value=22 Score=26.09 Aligned_cols=33 Identities=15% Similarity=0.005 Sum_probs=24.6
Q ss_pred HhhheeeccCCCchhhhhhhhccChhhHHHHHH
Q 013572 139 LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 139 L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
++-.|..+....+..++|...|||++|++++-+
T Consensus 17 ~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 17 LGELLRSARGDMSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHc
Confidence 444455555445889999999999999998743
No 226
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=37.92 E-value=16 Score=33.26 Aligned_cols=39 Identities=23% Similarity=0.075 Sum_probs=29.3
Q ss_pred HHHhhheeeccC---CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 137 IRLGIGLFRLVN---GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 137 ~~L~i~L~~La~---g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++..-.|..|+. +.+..+|+...|+++||++++++...+
T Consensus 8 ~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444532 578999999999999999999887765
No 227
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=37.82 E-value=31 Score=28.91 Aligned_cols=27 Identities=26% Similarity=0.159 Sum_probs=23.3
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..++.++|..+|+|.+||++.+++..+
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999998777654
No 228
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=37.55 E-value=21 Score=29.26 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=32.0
Q ss_pred CCH-HHHHhhheeeccCCCchhhhhhhhc----cChhhHHHHHHHHHH
Q 013572 133 LSA-DIRLGIGLFRLVNGSTYSEIATRFE----VTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~-e~~L~i~L~~La~g~s~~~la~~Fg----vs~sTv~~~v~~v~~ 175 (440)
+++ +..+..+||....+.+..+|+..++ ++.+||++++.+..+
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 444 4456666665546789999999998 899999988776654
No 229
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=37.54 E-value=15 Score=34.99 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=20.0
Q ss_pred CchhhhhhhhccChhhHHHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
.+.++||...|||.+|||++++.
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHHHCC
Confidence 45789999999999999998753
No 230
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=37.54 E-value=21 Score=29.22 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.4
Q ss_pred chhhhhhhhccChhhHHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
+-+++|..||||++||.+.+...
T Consensus 40 ser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHHHH
Confidence 34789999999999998765543
No 231
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=37.31 E-value=22 Score=32.75 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=33.2
Q ss_pred CCHHHHHhhheeecc---CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLV---NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La---~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++.-++..-.|..|+ .+.+..+|+...|+++||++++++...+
T Consensus 17 v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~ 62 (265)
T 2ia2_A 17 VQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE 62 (265)
T ss_dssp CHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455555555566665 3578999999999999999999987765
No 232
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=37.21 E-value=25 Score=28.94 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.+..+|+...+++++|+++++.+..+
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 51 ELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 367889999999999999998776553
No 233
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=37.17 E-value=15 Score=26.09 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=29.9
Q ss_pred cCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhhhhhcCCChhhHHHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPEELGLISKSF 200 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~~~I~~P~~~~~~~~~~~f 200 (440)
..|.+..++|...|+|++|++++.+. -..|+.+.+..++..|
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~g------------~~~~~~~~l~~ia~~l 62 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCSN------------KSQPSLDMLVKVAELL 62 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT------------SSCCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC------------CCCCCHHHHHHHHHHH
Confidence 46889999999999999999886431 1235555566665554
No 234
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=37.08 E-value=16 Score=33.20 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=29.2
Q ss_pred HHHhhheeeccC---CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 137 IRLGIGLFRLVN---GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 137 ~~L~i~L~~La~---g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
++..-.|..|+. +.+..+|+...|+++||++++++...+
T Consensus 6 ~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~ 47 (241)
T 2xrn_A 6 ARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE 47 (241)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444543 568999999999999999999887764
No 235
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=36.86 E-value=68 Score=25.59 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 104 KMSSSTFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 104 Rms~~tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.|+.+.|.-|+++- +|..+.-++.-=-||-.|.+-..++..+||+.+-.++.++++-.
T Consensus 29 ~vsee~F~LLlelS--------------~IrSekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~~ 86 (111)
T 3m8j_A 29 SMSEEQFFLLIGIS--------------SIHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLTR 86 (111)
T ss_dssp CSCHHHHHHHHHHS--------------CCCCHHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHC--------------CCCCHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 47888888888763 13334333333457899999999999999999999888776543
No 236
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.83 E-value=16 Score=25.85 Aligned_cols=25 Identities=4% Similarity=-0.079 Sum_probs=21.5
Q ss_pred cCCCchhhhhhhhccChhhHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..|.+..++|...|+|++|++++.+
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4588899999999999999988743
No 237
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=36.75 E-value=12 Score=35.35 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.3
Q ss_pred CchhhhhhhhccChhhHHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
.+.++||..+|||.+|||++++
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln 32 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 3578999999999999999864
No 238
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=36.49 E-value=11 Score=33.52 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.5
Q ss_pred eccCCCchhhhhhhhccChhhHHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
++..|.+...|+..+|+|.+|+++++.
T Consensus 171 ~~~~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 171 MLEEGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 345899999999999999999998754
No 239
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=36.43 E-value=18 Score=26.04 Aligned_cols=26 Identities=8% Similarity=-0.011 Sum_probs=22.1
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
...|.+..++|...|||++|++++.+
T Consensus 12 ~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 12 IRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 35688899999999999999998753
No 240
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=36.41 E-value=14 Score=27.51 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=22.9
Q ss_pred eccCCCchhhhhhhhccChhhHHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
+...|.+..++|...|||++|++++-+
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 345789999999999999999998743
No 241
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=36.15 E-value=31 Score=29.51 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=23.6
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
...++.+||..+|+|++||++.+++..+
T Consensus 30 ~~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 30 ARLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999988776543
No 242
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=35.98 E-value=18 Score=27.22 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=21.3
Q ss_pred cCCCchhhhhhhhccChhhHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..|.+..++|...|||++|++++.+
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4578899999999999999998743
No 243
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=35.45 E-value=16 Score=32.32 Aligned_cols=44 Identities=30% Similarity=0.259 Sum_probs=34.9
Q ss_pred CCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 132 NLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 132 ~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
.+++.+.- .|.+|+.|.+..+|+...++|..||..++.+..+.+
T Consensus 149 ~LT~rE~~--vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 149 GLTDQERT--LLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TSCHHHHH--HHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHH--HHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 46766643 355688999999999999999999999887766543
No 244
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=35.39 E-value=13 Score=27.05 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.4
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
-..|.+..++|...|||++|++++-+
T Consensus 21 ~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 21 LEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 45788999999999999999998743
No 245
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=34.79 E-value=33 Score=26.73 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=20.4
Q ss_pred CCchhhhhhhhccChhhHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
+.+.+.+|...||+.||++|+-...
T Consensus 23 ~~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 23 MLGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHhHHHHHHHhCCCHHHHHHHHhhh
Confidence 3457899999999999999965544
No 246
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=34.75 E-value=26 Score=32.15 Aligned_cols=40 Identities=8% Similarity=-0.078 Sum_probs=30.3
Q ss_pred HHHHhhheeeccC---CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLVN---GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La~---g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
-++..-.|..|+. +.+..+|+...|+++||+++++....+
T Consensus 5 l~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~ 47 (260)
T 3r4k_A 5 VSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE 47 (260)
T ss_dssp HHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444445555553 568999999999999999999887765
No 247
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=34.48 E-value=22 Score=26.66 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=27.6
Q ss_pred CCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 133 is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
.++.++|--. +-..|.+..++|...|||++|++++.+.
T Consensus 7 ~~~g~~l~~~--r~~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 7 PRPGDIIQES--LDELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp CCHHHHHHHH--HHHHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CChhHHHHHH--HHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3444554322 3345889999999999999999998653
No 248
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=34.33 E-value=17 Score=32.39 Aligned_cols=65 Identities=11% Similarity=-0.050 Sum_probs=45.1
Q ss_pred CCHHHHHhhheeecc--------------C-CCchhhhhhhhccCh-hhHHHHHHHHHHH-HHHhhhhhhcCCChhhHHH
Q 013572 133 LSADIRLGIGLFRLV--------------N-GSTYSEIATRFEVTE-SVTRFCVKQLCRV-LCTNFRFWVAFPGPEELGL 195 (440)
Q Consensus 133 is~e~~L~i~L~~La--------------~-g~s~~~la~~Fgvs~-sTv~~~v~~v~~~-i~~~l~~~I~~P~~~~~~~ 195 (440)
.++++|++-+|..|+ - ..+..+||...|+++ .|++|+++++.+. +.+.-+..|...+.+.+.+
T Consensus 138 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I~d~~~L~~ 217 (238)
T 2bgc_A 138 NGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKR 217 (238)
T ss_dssp THHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHH
Confidence 567899999887653 2 467789999999999 5999999888642 2222234455666655554
Q ss_pred HH
Q 013572 196 IS 197 (440)
Q Consensus 196 ~~ 197 (440)
..
T Consensus 218 ~~ 219 (238)
T 2bgc_A 218 YA 219 (238)
T ss_dssp HC
T ss_pred Hh
Confidence 43
No 249
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=34.32 E-value=13 Score=28.84 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=18.0
Q ss_pred chhhhhhhhccChhhHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~ 171 (440)
+.++++..||||++||++.+.
T Consensus 37 s~~eLa~~~~vSr~tvr~al~ 57 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 567999999999999987644
No 250
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=34.25 E-value=1e+02 Score=23.48 Aligned_cols=73 Identities=12% Similarity=0.026 Sum_probs=51.5
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHhhheeeccCCC---chhhhhhhhccC-hhhHHHHH
Q 013572 95 LPDSFRNSFKMSSSTFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLFRLVNGS---TYSEIATRFEVT-ESVTRFCV 170 (440)
Q Consensus 95 ~~~~F~~~fRms~~tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~~La~g~---s~~~la~~Fgvs-~sTv~~~v 170 (440)
+-++.-..++||+.+|.+++...... . +...--..++..+...|..+. +..+||...|-+ .+..++.|
T Consensus 20 ~~~~lA~~~~~s~~~l~r~fk~~~G~----s----~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~F 91 (108)
T 3mn2_A 20 TIEKLTALTGISSRGIFKAFQRSRGY----S----PMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDY 91 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHTSS----C----HHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhCc----C----HHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHHHH
Confidence 45778889999999999999765211 0 011223566667777787776 899999999985 66777777
Q ss_pred HHHHH
Q 013572 171 KQLCR 175 (440)
Q Consensus 171 ~~v~~ 175 (440)
++...
T Consensus 92 k~~~G 96 (108)
T 3mn2_A 92 RDMFG 96 (108)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 76553
No 251
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=34.11 E-value=25 Score=24.51 Aligned_cols=42 Identities=7% Similarity=0.036 Sum_probs=29.9
Q ss_pred cCCCchhhhhhhhc--cChhhHHHHHHHHHHHHHHhhhhhhcCCChhhHHHHHHHH
Q 013572 147 VNGSTYSEIATRFE--VTESVTRFCVKQLCRVLCTNFRFWVAFPGPEELGLISKSF 200 (440)
Q Consensus 147 a~g~s~~~la~~Fg--vs~sTv~~~v~~v~~~i~~~l~~~I~~P~~~~~~~~~~~f 200 (440)
..|.+..++|...| +|++|++++-+. -.-|+.+.+..++..|
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~g------------~~~~~~~~l~~la~~l 62 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYERG------------DRAVTVQRLAELADFY 62 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHHT------------CSCCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHCC------------CCCCCHHHHHHHHHHH
Confidence 45788999999999 999999886442 1235555666666555
No 252
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=34.01 E-value=17 Score=29.38 Aligned_cols=27 Identities=19% Similarity=-0.064 Sum_probs=23.3
Q ss_pred eccCCCchhhhhhhhccChhhHHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
+-..|.+..++|..+|+|.+|++++-+
T Consensus 80 R~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 80 RKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 456799999999999999999998743
No 253
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=33.89 E-value=21 Score=26.00 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.2
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
...|.+..++|...||+++|++++-+
T Consensus 24 ~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 24 SAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 35688999999999999999998743
No 254
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=33.74 E-value=20 Score=30.92 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=33.5
Q ss_pred CCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 133 is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
+++.++-. |.+++.|.+..+++..+++|..||..++.+..+.+
T Consensus 143 Lt~rE~~v--l~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 143 LTGREQQV--LQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp SCHHHHHH--HHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHH--HHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 55555433 44568899999999999999999998887776654
No 255
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=33.00 E-value=30 Score=31.62 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.+..+||..+|++++|+++.++...+
T Consensus 166 ~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 166 GTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456789999999999999999887664
No 256
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=32.51 E-value=17 Score=27.75 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.9
Q ss_pred ccCCCchhhhhhhhccChhhHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v 170 (440)
...|.+..++|...|||++|++++-
T Consensus 40 ~~~glsq~elA~~lgvs~~~is~~E 64 (99)
T 2ppx_A 40 RALKLTQEEFSARYHIPLGTLRDWE 64 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 3468899999999999999999874
No 257
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=32.48 E-value=21 Score=25.85 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=21.7
Q ss_pred cCCCchhhhhhhhccChhhHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..|.+..++|...|||++|++++.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4688899999999999999998744
No 258
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=32.37 E-value=50 Score=24.43 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=21.1
Q ss_pred heeeccCCC--chhhhhhhhccChhhHHHHHH
Q 013572 142 GLFRLVNGS--TYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 142 ~L~~La~g~--s~~~la~~Fgvs~sTv~~~v~ 171 (440)
++..|..|. +...||..+|+++++|.+++.
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY 51 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLY 51 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHH
Confidence 333444443 567999999999998876543
No 259
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=32.35 E-value=31 Score=30.69 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHhhheeecc---CCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 137 IRLGIGLFRLV---NGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 137 ~~L~i~L~~La---~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
+...-+++.|. .+.+..+||..++++++||++.+++..
T Consensus 5 edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 5 EDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp HHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 33444444443 356788999999999999999887765
No 260
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.32 E-value=13 Score=26.46 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=18.0
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+..+++..+|||.+|+.+++..
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 4568999999999999887543
No 261
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=32.31 E-value=23 Score=29.47 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=24.4
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.++.+++...|++++|+++.+++..+
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~ 63 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVE 63 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4588999999999999999998887665
No 262
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=32.29 E-value=30 Score=28.61 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+++..+|||++||++.+.....
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~ 80 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLAT 80 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3467889999999999999998776654
No 263
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.14 E-value=29 Score=30.58 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=31.1
Q ss_pred CCCHHHH-HhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 132 NLSADIR-LGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~e~~-L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+++.+- +...|+. ..+.+..+|+..++++++||++++.+..+
T Consensus 45 gLt~~q~~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp TCCHHHHHHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555444 3444443 35789999999999999999998776554
No 264
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=32.10 E-value=22 Score=27.76 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=30.2
Q ss_pred CCCCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHH
Q 013572 131 LNLSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
.+.+|.+.|.-.+ +-..|.+..++|...|||++|++++.+
T Consensus 10 ~~~~pG~~Lk~~l-r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 10 RPIHPGEILAEEL-GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCCCHHHHHHHHH-HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3466666665321 246789999999999999999998865
No 265
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=32.03 E-value=40 Score=28.83 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=22.9
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..++.+||..+|+|.+||++.+++..+
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKLRE 67 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999988776543
No 266
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=31.76 E-value=23 Score=26.31 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=22.6
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
-..|.+..++|...|||++|++++.+
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45688999999999999999998754
No 267
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=31.72 E-value=37 Score=29.39 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=21.7
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
+.+..++|..||||++||++-+....
T Consensus 36 ~~s~~eLa~~l~vS~~Ti~rdi~~L~ 61 (187)
T 1j5y_A 36 PVSGAQLAEELSVSRQVIVQDIAYLR 61 (187)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 36788999999999999998776543
No 268
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=31.23 E-value=28 Score=27.59 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCCH-HHHHhhheeeccCCCchhhhhhhhc----cChhhHHHHHHHHHH
Q 013572 132 NLSA-DIRLGIGLFRLVNGSTYSEIATRFE----VTESVTRFCVKQLCR 175 (440)
Q Consensus 132 ~is~-e~~L~i~L~~La~g~s~~~la~~Fg----vs~sTv~~~v~~v~~ 175 (440)
.+++ +..+..+||.. .+.+..+|+..++ ++.+||++++.+..+
T Consensus 7 ~Lt~~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp CCCHHHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 3555 44566677763 4789999999998 589999988777654
No 269
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=31.23 E-value=37 Score=26.32 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=24.3
Q ss_pred cCCCchhhhhhhh-ccChhhHHHHHHHHHH
Q 013572 147 VNGSTYSEIATRF-EVTESVTRFCVKQLCR 175 (440)
Q Consensus 147 a~g~s~~~la~~F-gvs~sTv~~~v~~v~~ 175 (440)
..+.++.+++... |++++|+++.+++..+
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3458899999999 9999999998776554
No 270
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=30.97 E-value=23 Score=27.63 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=23.2
Q ss_pred eccCCCchhhhhhhhccChhhHHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
+-..|.+..++|...|||++|++++.+
T Consensus 20 r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 346689999999999999999998754
No 271
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=30.84 E-value=25 Score=26.67 Aligned_cols=42 Identities=14% Similarity=-0.013 Sum_probs=30.9
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhhhhhcCCChhhHHHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPEELGLISKSF 200 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~~~I~~P~~~~~~~~~~~f 200 (440)
-..|.+..++|...|||++|++++.+. +-|+.+.+..+++.|
T Consensus 34 ~~~glTq~eLA~~~GiS~~tis~iE~G-------------~~~s~~~l~kIa~~L 75 (88)
T 3t76_A 34 IDRDMKKGELREAVGVSKSTFAKLGKN-------------ENVSLTVLLAICEYL 75 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT-------------CCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC-------------CCcCHHHHHHHHHHH
Confidence 456889999999999999999987442 124556666666655
No 272
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=30.45 E-value=11 Score=35.56 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+.++||...|||.+|||+.++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5679999999999999998876
No 273
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=30.39 E-value=11 Score=35.58 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=0.0
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+.++||...|||.+|||+.++.
T Consensus 7 ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 7 TIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp ----------------------
T ss_pred cHHHHHHHHCCCHHHHHHHHcC
Confidence 5789999999999999998875
No 274
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.37 E-value=88 Score=25.84 Aligned_cols=78 Identities=14% Similarity=-0.009 Sum_probs=45.3
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhcccc--cccCCCCC-CCCCCHHHHHhhheeecc--CCCchhhhhhhh---------
Q 013572 94 QLPDSFRNSFKMSSSTFRWLSGLLEPLL--DCRDPVGL-PLNLSADIRLGIGLFRLV--NGSTYSEIATRF--------- 159 (440)
Q Consensus 94 ~~~~~F~~~fRms~~tF~~L~~~L~~~l--~~~~~~~r-~~~is~e~~L~i~L~~La--~g~s~~~la~~F--------- 159 (440)
.+-.+--+.|++++.|+...+...+... ......++ +..++.+..-.+. .++. .+.+...++..+
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~-~~~~~~~~~s~~~i~~~l~~~~~~~~~ 120 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIG-DYKRQNPTMFAWEIRDRLLAEGVCDND 120 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHH-HHHHHCSSSCHHHHHHHHHHHTCSCTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHH-HHHHHCccchHHHHHHHHHHhcccccC
Confidence 3456677789999999988887654321 11111122 2345554333222 2222 346777777766
Q ss_pred -ccChhhHHHHHHH
Q 013572 160 -EVTESVTRFCVKQ 172 (440)
Q Consensus 160 -gvs~sTv~~~v~~ 172 (440)
.+|.+||++++++
T Consensus 121 ~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 121 TVPSVSSINRIIRT 134 (159)
T ss_dssp TSCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHH
Confidence 4788998887664
No 275
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=30.22 E-value=35 Score=29.88 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=22.5
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
.+.+..++|..+|+|++||++.++...
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le 58 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLK 58 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456789999999999999998766544
No 276
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=30.06 E-value=11 Score=32.25 Aligned_cols=41 Identities=12% Similarity=-0.080 Sum_probs=0.5
Q ss_pred CCHHHHHhhheeecc---CCCchhhhhhhhccChhhHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLV---NGSTYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 133 is~e~~L~i~L~~La---~g~s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
.++++|++-+|..+. ...+..+||...|+++.|++|+.++.
T Consensus 149 ~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l 192 (194)
T 3dn7_A 149 YSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKY 192 (194)
T ss_dssp C-------------------------------------------
T ss_pred CCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhh
Confidence 466778887776653 35678899999999999999998765
No 277
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=29.96 E-value=24 Score=27.12 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=22.9
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
-..|.+..++|...|||++|++++.+
T Consensus 28 ~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 28 DDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45688999999999999999998865
No 278
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=29.76 E-value=22 Score=31.98 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHhhheeecc-CCCch--hhhhhhhccChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLV-NGSTY--SEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La-~g~s~--~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+.+..+||.+. .|.+. .++|..++++++||++.+.+..+
T Consensus 8 ~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~ 50 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMER 50 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666677664 34444 89999999999999998877653
No 279
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=29.53 E-value=38 Score=26.49 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=27.9
Q ss_pred HHhhheeeccCCCchhhhhhhh-ccChhhHHHHHHHHHH
Q 013572 138 RLGIGLFRLVNGSTYSEIATRF-EVTESVTRFCVKQLCR 175 (440)
Q Consensus 138 ~L~i~L~~La~g~s~~~la~~F-gvs~sTv~~~v~~v~~ 175 (440)
.+...|. ..+.++.+|+... |++++|+++.+++..+
T Consensus 26 ~IL~~L~--~~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 26 SLMDELF--QGTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp HHHHHHH--HSCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3444444 2568899999999 9999999998877664
No 280
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=29.36 E-value=11 Score=35.79 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+.++||...|||.+|||++++.
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
Confidence 5689999999999999999876
No 281
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=29.09 E-value=34 Score=27.75 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.8
Q ss_pred CchhhhhhhhccChhhHHHHHHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+...||...|++.+||.+.+....+
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46779999999999999988777654
No 282
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=29.05 E-value=12 Score=35.44 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred CchhhhhhhhccChhhHHHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
.+.++||...|||.+|||++++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 45689999999999999999864
No 283
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=29.01 E-value=1.1e+02 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=29.7
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHHHh
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTN 180 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~ 180 (440)
+..=|..+|..|+.+.|.|-+.++..+++.|..
T Consensus 47 tK~LYp~IA~k~~TT~s~VEraIR~aIe~aw~~ 79 (120)
T 1fc3_A 47 TKVLYPDIAKKYNTTASRVERAIRHAIEVAWSR 79 (120)
T ss_dssp TTTHHHHHHHHHTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHC
Confidence 345699999999999999999999999999876
No 284
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=28.75 E-value=34 Score=25.36 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=31.6
Q ss_pred eccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhhhhhcCCChhhHHHHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPEELGLISKSF 200 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~~~I~~P~~~~~~~~~~~f 200 (440)
+...|.+..++|...||+.+|++++.+. -.-|+.+.+..++..|
T Consensus 22 r~~~glsq~~lA~~~gis~~~is~~e~g------------~~~p~~~~l~~la~~l 65 (91)
T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADYESG------------RAIPNNQVLGKIERAI 65 (91)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHHT------------CSCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC------------CCCCCHHHHHHHHHHH
Confidence 4567889999999999999999987542 1235555566666555
No 285
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=28.67 E-value=39 Score=26.19 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=21.8
Q ss_pred CchhhhhhhhccChhhHHHHHHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.++..|+...++++||+++.+.+.-+
T Consensus 37 ~s~~eLa~~l~l~~stLsR~l~rLe~ 62 (96)
T 2obp_A 37 WSLPKIAKRAQLPMSVLRRVLTQLQA 62 (96)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCchhhHHHHHHHHHH
Confidence 57889999999999999987765443
No 286
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=28.42 E-value=12 Score=35.57 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=0.0
Q ss_pred chhhhhhhhccChhhHHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
+.++||...|||.+|||++++.-
T Consensus 5 ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 5 TLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp -----------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHcCC
Confidence 56899999999999999988763
No 287
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=28.19 E-value=12 Score=35.20 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=0.0
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+.++||...|||.+|||++++.
T Consensus 5 ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 4679999999999999998875
No 288
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=28.01 E-value=33 Score=28.80 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=27.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
+.+.++|+..-|||++|++++|..--..+...+.
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (206)
T 3dew_A 28 GVSIRELAQAAGASISMISYHFGGKEGLYAAVLQ 61 (206)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 6789999999999999999998776665555543
No 289
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=27.94 E-value=13 Score=35.25 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=0.0
Q ss_pred CchhhhhhhhccChhhHHHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
.+.++||..+|||.+|||+.++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 35689999999999999998874
No 290
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=27.84 E-value=50 Score=27.16 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.0
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.+..+|+...+++++|+++++....+
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 357899999999999999998877653
No 291
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=27.72 E-value=28 Score=26.25 Aligned_cols=25 Identities=8% Similarity=-0.055 Sum_probs=21.5
Q ss_pred ccCCCchhhhhhhhccChhhHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v 170 (440)
-..|.+..++|...|||++|++++.
T Consensus 14 ~~~gltq~~lA~~~gis~~~is~~e 38 (99)
T 2l49_A 14 KSEYLSRQQLADLTGVPYGTLSYYE 38 (99)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3568899999999999999998763
No 292
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=27.39 E-value=13 Score=35.41 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+.++||...|||.+|||++++.
T Consensus 14 ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ----------------------
T ss_pred cHHHHHHHhCCCHHHHHHHHCC
Confidence 4679999999999999999874
No 293
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=27.37 E-value=38 Score=28.19 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=27.3
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+.+.++|+..-|||++|++.+|..--..+...+
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 64 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALA 64 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 7899999999999999999988766555444443
No 294
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=27.19 E-value=28 Score=26.75 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.3
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
-..|.+..++|...|||.+|++++.+
T Consensus 11 ~~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 11 KEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35688999999999999999998754
No 295
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=27.14 E-value=38 Score=28.92 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=27.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
+.+.++|+..-|||++|++++|..--..+...+.
T Consensus 37 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (218)
T 3gzi_A 37 QVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIH 70 (218)
T ss_dssp CCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999998766665555543
No 296
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=27.13 E-value=32 Score=28.71 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=26.5
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+.+.++|+..-|||++|++++|..--..+...+
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 54 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEIL 54 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHH
Confidence 3578899999999999999988776555554444
No 297
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=27.07 E-value=28 Score=29.39 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=22.9
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
+.+.++|+..-|||++|++++|..--..+
T Consensus 32 ~~t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 32 AVTVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred cccHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 67899999999999999987755443333
No 298
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=26.93 E-value=26 Score=27.29 Aligned_cols=39 Identities=8% Similarity=0.145 Sum_probs=29.9
Q ss_pred HHHHhhheeeccCCCchhhhhhhhc----cChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLVNGSTYSEIATRFE----VTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La~g~s~~~la~~Fg----vs~sTv~~~v~~v~~ 175 (440)
+..+...||. ..+.+..+|+..++ ++.+||.+++.+..+
T Consensus 37 e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 37 ELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp CSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 5567777776 45789999999987 578999988776554
No 299
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=26.83 E-value=47 Score=25.54 Aligned_cols=29 Identities=7% Similarity=0.163 Sum_probs=24.1
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
+....+..++|..+|+|.+++++.+++.+
T Consensus 18 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 18 FSEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp TTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34456678999999999999999998875
No 300
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=26.75 E-value=1.2e+02 Score=24.29 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=35.1
Q ss_pred hCCCCccccc------cceEEEEeecCCCCCCCCCCcEEEEee------cCCCceEEeeecCC
Q 013572 204 TGLPNCCGVI------DCTRFKIIKIDGSNSSKDEDSIAVQIV------VDSSSRMLSIVAGI 254 (440)
Q Consensus 204 ~~fP~ciGaI------Dgthi~i~~p~~~n~k~~~~si~~q~v------~D~~~rf~~v~~g~ 254 (440)
.|||+.-.+| ||.|+.++.|.+.+++--.||+-+-+= .+.+.-|.-|++|.
T Consensus 5 pgfPgAPs~ikIsK~~dgahLsWePP~~~sG~I~EYSVYlAvrs~~~~~~~~qL~FvrVYcG~ 67 (123)
T 1wft_A 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGL 67 (123)
T ss_dssp SSCCCCCEEEEEEECSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEES
T ss_pred CCCCCCCcceEEeeCCCceEEeecCCCCCCcccEEEEEEEEecccccCCCcCeeeEEEEEecC
Confidence 4788775555 899999999998887655566543322 23456777777764
No 301
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=26.72 E-value=62 Score=27.11 Aligned_cols=26 Identities=4% Similarity=0.133 Sum_probs=22.1
Q ss_pred CchhhhhhhhccChhhHHHHHHHHHH
Q 013572 150 STYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 150 ~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.++.+||..+|+|.+||++-+++..+
T Consensus 18 ~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 18 LAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 57899999999999999988776543
No 302
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=26.67 E-value=1e+02 Score=23.55 Aligned_cols=73 Identities=11% Similarity=-0.031 Sum_probs=48.8
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHhhheeecc-CCCchhhhhhhhcc-ChhhHHHHHHH
Q 013572 95 LPDSFRNSFKMSSSTFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLFRLV-NGSTYSEIATRFEV-TESVTRFCVKQ 172 (440)
Q Consensus 95 ~~~~F~~~fRms~~tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~~La-~g~s~~~la~~Fgv-s~sTv~~~v~~ 172 (440)
+-++.-..++||+.+|.+++...... .+ ...--..++..+...|. ++.+..+||...|- +.+..++.|++
T Consensus 23 ~~~~lA~~~~~S~~~l~r~fk~~~G~----s~----~~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~ 94 (108)
T 3oou_A 23 SLKTLGNDFHINAVYLGQLFQKEMGE----HF----TDYLNRYRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFYRQFKK 94 (108)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHSS----CH----HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCc----CH----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHcCCCChHHHHHHHHH
Confidence 45778888999999999988764210 00 01112445555555554 57799999999999 56777887776
Q ss_pred HHH
Q 013572 173 LCR 175 (440)
Q Consensus 173 v~~ 175 (440)
...
T Consensus 95 ~~G 97 (108)
T 3oou_A 95 HTG 97 (108)
T ss_dssp HHS
T ss_pred HhC
Confidence 553
No 303
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=26.50 E-value=35 Score=26.52 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.4
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
-..|.+..++|...|||++|++++-+
T Consensus 19 ~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 19 KEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45688999999999999999998744
No 304
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=26.39 E-value=24 Score=30.01 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=31.1
Q ss_pred CCH-HHHHhhheeeccC--CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSA-DIRLGIGLFRLVN--GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~-e~~L~i~L~~La~--g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++ +..+...|+.-.. |.+..+|+...+++++||++.+++..+
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 554 3444455554433 379999999999999999998777654
No 305
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=26.36 E-value=24 Score=28.56 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=18.7
Q ss_pred chhhhhhhhccChhhHHHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
+-++++..||||++||.+.+....
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQ 60 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999998766554
No 306
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=26.27 E-value=32 Score=28.87 Aligned_cols=33 Identities=9% Similarity=0.228 Sum_probs=25.8
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 27 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av~ 59 (192)
T 2zcm_A 27 GTTLDDISKSVNIKKASLYYHYDNKEEIYRKSV 59 (192)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 678999999999999999988765554444443
No 307
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=26.06 E-value=38 Score=24.55 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=18.3
Q ss_pred chhhhhhhhccChhhHHHHHHH
Q 013572 151 TYSEIATRFEVTESVTRFCVKQ 172 (440)
Q Consensus 151 s~~~la~~Fgvs~sTv~~~v~~ 172 (440)
+..+.|..+|||++++++.+++
T Consensus 18 Ti~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 18 TIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EHHHHHHHTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHc
Confidence 4679999999999999877543
No 308
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=26.04 E-value=26 Score=26.92 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.3
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
...|.+..++|...||+++|++++-+
T Consensus 38 ~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 38 LEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 35688999999999999999998744
No 309
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.85 E-value=41 Score=28.67 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=26.4
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 28 ~~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~v~ 60 (202)
T 2d6y_A 28 GARIDRIAAEARANKQLIYAYYGNKGELFASVL 60 (202)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 678999999999999999998876555554443
No 310
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=25.76 E-value=32 Score=29.01 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=27.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
+.+.++|+..-|||++|++++|..--..+...+.
T Consensus 32 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 65 (202)
T 3lwj_A 32 NTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLE 65 (202)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHHcCCHHHHHHHHHH
Confidence 6788999999999999999988766666555543
No 311
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=25.75 E-value=33 Score=28.38 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=25.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (188)
T 3qkx_A 28 QLSMLKLAKEANVAAGTIYLYFKNKDELLEQFA 60 (188)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHH
Confidence 577889999999999999988766555444443
No 312
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=25.65 E-value=29 Score=28.81 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=25.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 30 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 62 (191)
T 3on4_A 30 AFSFKDIATAINIKTASIHYHFPSKEDLGVAVI 62 (191)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHH
Confidence 588999999999999999988765544444433
No 313
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=25.55 E-value=31 Score=30.23 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCHHHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 133 LSADIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 133 is~e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+++.+.-. |.+|+.|.+..+|+...++|..||..++.+..+
T Consensus 160 Lt~rE~~v--L~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~ 200 (225)
T 3klo_A 160 LTKREQQI--IKLLGSGASNIEIADKLFVSENTVKTHLHNVFK 200 (225)
T ss_dssp SCHHHHHH--HHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHH--HHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66655543 445788999999999999999999988776654
No 314
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=25.51 E-value=48 Score=28.81 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=21.5
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
+.+.++||..+|++.+||++.++...
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le 49 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALE 49 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 46899999999999999888766544
No 315
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=25.17 E-value=36 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=23.4
Q ss_pred eccCCCchhhhhhhhccChhhHHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
+-..|.+..++|...|||+++++++-+
T Consensus 77 R~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 77 RMKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 356788999999999999999998755
No 316
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=25.16 E-value=56 Score=26.54 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=24.1
Q ss_pred CCCchhhhhhhh-ccChhhHHHHHHHHHH
Q 013572 148 NGSTYSEIATRF-EVTESVTRFCVKQLCR 175 (440)
Q Consensus 148 ~g~s~~~la~~F-gvs~sTv~~~v~~v~~ 175 (440)
.+.++.+|+... ||+++|+++.+++..+
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 457899999999 7999999998887665
No 317
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=25.10 E-value=31 Score=28.31 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 56 (170)
T 3egq_A 24 EVSIEEIAREAKVSKSLIFYHFESKQKLLEEAV 56 (170)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHH
Confidence 578899999999999999988766555544443
No 318
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=24.97 E-value=42 Score=29.97 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=24.7
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
+.++..+|...++|++|+++.+++..+
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466999999999999999999998887
No 319
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=24.93 E-value=34 Score=28.41 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++.+|..--..+...+
T Consensus 22 ~~s~~~Ia~~agvskgtlY~~F~sKe~L~~~~~ 54 (179)
T 2eh3_A 22 GTSVEEIVKRANLSKGAFYFHFKSKEELITEII 54 (179)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcHHHHHHcCCHHHHHHHHH
Confidence 678999999999999999988665444444433
No 320
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=24.83 E-value=29 Score=27.28 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.4
Q ss_pred eccCCCchhhhhhhhccChhhHHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
+...|.+..++|...|||.+|++++-+
T Consensus 32 R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 32 RTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 346789999999999999999998755
No 321
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=24.76 E-value=45 Score=25.65 Aligned_cols=27 Identities=4% Similarity=-0.091 Sum_probs=22.7
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
...+..++|..+|+|.+++++.+++.+
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~~ 43 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRSR 43 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 345667999999999999999998873
No 322
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=24.72 E-value=47 Score=26.15 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=19.7
Q ss_pred CCchhhhhhhhccChhhHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..+..++|...|||.+||.|..+
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf~k 57 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRLSK 57 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHHHH
Confidence 57889999999999999987544
No 323
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=24.49 E-value=38 Score=26.76 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=19.9
Q ss_pred CCchhhhhhhhccChhhHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
..+-.++|...|||.+||.|..+
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCX 61 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHCCCHHHHHHHHH
Confidence 67889999999999999987643
No 324
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=24.47 E-value=93 Score=23.98 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=20.7
Q ss_pred cCCCchhhhhhhhccChhhHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFC 169 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~ 169 (440)
..|.+..++|...|||.+|++++
T Consensus 47 ~~glsq~elA~~~gis~~~is~~ 69 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASY 69 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 56889999999999999999876
No 325
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=24.34 E-value=29 Score=27.20 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=27.2
Q ss_pred HHHHHhhheee--ccCCCchhhhhhhhccChhhHHHHH
Q 013572 135 ADIRLGIGLFR--LVNGSTYSEIATRFEVTESVTRFCV 170 (440)
Q Consensus 135 ~e~~L~i~L~~--La~g~s~~~la~~Fgvs~sTv~~~v 170 (440)
....++-.|.. ...|.+..++|...|||++|++++-
T Consensus 18 ~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 18 LRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34445555544 4578999999999999999999873
No 326
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=24.23 E-value=52 Score=25.37 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=23.8
Q ss_pred cCCCchhhhhhhh-ccChhhHHHHHHHHHH
Q 013572 147 VNGSTYSEIATRF-EVTESVTRFCVKQLCR 175 (440)
Q Consensus 147 a~g~s~~~la~~F-gvs~sTv~~~v~~v~~ 175 (440)
..+.++.+|+... |++++|+++.+++..+
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 3457899999999 5999999988776554
No 327
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=24.21 E-value=33 Score=27.30 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=31.1
Q ss_pred eccCCCchhhhhhhhccChhhHHHHHHHHHHHHHHhhhhhhcCCChhhHHHHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRFWVAFPGPEELGLISKSF 200 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~~~I~~P~~~~~~~~~~~f 200 (440)
+...|.+..++|...|||++|++++-+. -.-|+.+.+..++..|
T Consensus 21 R~~~glsq~~lA~~~gis~~~is~~E~g------------~~~p~~~~l~~ia~~l 64 (126)
T 3ivp_A 21 RKKQGLTREQVGAMIEIDPRYLTNIENK------------GQHPSLQVLYDLVSLL 64 (126)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHS------------CCCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHCC------------CCCCCHHHHHHHHHHH
Confidence 3467899999999999999999987432 1235555555555554
No 328
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=24.17 E-value=41 Score=28.78 Aligned_cols=34 Identities=12% Similarity=-0.018 Sum_probs=27.1
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+.+.++|+..-|||++|++++|..--..+...+
T Consensus 34 ~~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~~ 67 (221)
T 3c2b_A 34 KALTTSGLARAANCSKESLYKWFGDRDGLLAAMI 67 (221)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHH
Confidence 3578999999999999999998876555555444
No 329
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.03 E-value=47 Score=28.45 Aligned_cols=34 Identities=9% Similarity=0.104 Sum_probs=27.9
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+.+.++|+..-|||++|++.+|..--..+...+
T Consensus 38 ~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~ 71 (215)
T 2hku_A 38 EGVPITQICAAAGAHPNQVTYYYGSKERLFVEVA 71 (215)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 5788999999999999999999876665555544
No 330
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=24.03 E-value=36 Score=28.23 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=25.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 29 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 61 (195)
T 3ppb_A 29 GTSTATIAREAGVATGTLFHHFPSKEQLLEQLF 61 (195)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 578899999999999999988765555444443
No 331
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=23.99 E-value=44 Score=29.78 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=18.4
Q ss_pred hhhhhhhhccChhhHHHHHHHHH
Q 013572 152 YSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 152 ~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
-++++..||||++||.+.+....
T Consensus 34 E~eLa~~~gVSR~tVReAL~~L~ 56 (239)
T 1hw1_A 34 ERELSELIGVTRTTLREVLQRLA 56 (239)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 36889999999999987765543
No 332
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=23.77 E-value=48 Score=28.00 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=26.7
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 36 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 68 (213)
T 2qtq_A 36 DISLSELSLRSGLNSALVKYYFGNKAGLLKALL 68 (213)
T ss_dssp CCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHH
T ss_pred cccHHHHHHHhCCChhhHhHhcCCHHHHHHHHH
Confidence 678999999999999999999876555554444
No 333
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=23.73 E-value=36 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~ 66 (220)
T 3lhq_A 34 ATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIW 66 (220)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCceeehhhcCCHHHHHHHHH
Confidence 578899999999999999988776555554444
No 334
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=23.71 E-value=38 Score=28.23 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=27.8
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFR 182 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~ 182 (440)
+.+.++|+..-|||++|++++|..--..+...+.
T Consensus 34 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (191)
T 4aci_A 34 GATVRRLEEATGKSRGAIFHHFGDKENLFLALAR 67 (191)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCchHHHHHCCCHHHHHHHHHH
Confidence 4789999999999999999998776666655543
No 335
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=23.53 E-value=52 Score=29.41 Aligned_cols=51 Identities=16% Similarity=0.046 Sum_probs=34.8
Q ss_pred CCCCHHHHHhhheeecc----CCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 131 LNLSADIRLGIGLFRLV----NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 131 ~~is~e~~L~i~L~~La----~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
...+.+.-+..++..+. .+.+.+.|+...|||++|++++|..--..+...+
T Consensus 4 ~~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~~~~ 58 (234)
T 2opt_A 4 APLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVF 58 (234)
T ss_dssp CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHHHcCCHHHHHHHHH
Confidence 34555555555554443 2578999999999999999998776555544443
No 336
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=23.48 E-value=38 Score=28.17 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=28.3
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhhhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNFRF 183 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l~~ 183 (440)
+.+.++|+..-|||++|++++|..--..+...+..
T Consensus 27 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~ 61 (186)
T 2jj7_A 27 GTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKK 61 (186)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhhhhhhcCCHHHHHHHHHHH
Confidence 47889999999999999999987766666555543
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.45 E-value=53 Score=27.14 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=19.8
Q ss_pred CCchhhhhhhh-----ccChhhHHHHHHHHHH
Q 013572 149 GSTYSEIATRF-----EVTESVTRFCVKQLCR 175 (440)
Q Consensus 149 g~s~~~la~~F-----gvs~sTv~~~v~~v~~ 175 (440)
..+-.+|...+ ++|.+||+|.+..+.+
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 45566666666 8999999998776554
No 338
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=23.37 E-value=34 Score=28.83 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=26.4
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++.+|..--..+...+
T Consensus 29 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 61 (193)
T 2dg8_A 29 RVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAF 61 (193)
T ss_dssp GCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHH
T ss_pred hccHHHHHHHhCCCchhhheeCCCHHHHHHHHH
Confidence 678999999999999999988766555555444
No 339
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=23.22 E-value=34 Score=28.37 Aligned_cols=33 Identities=9% Similarity=0.257 Sum_probs=26.1
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (194)
T 2g7s_A 28 SFSYADISQVVGIRNASIHHHFPSKSDLVCKLV 60 (194)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHH
Confidence 578899999999999999988776555554444
No 340
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=23.21 E-value=62 Score=24.78 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=22.5
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
...+..++|..+|+|.+++++.+++..
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345567899999999999999998874
No 341
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=23.19 E-value=79 Score=23.91 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=48.4
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHhhheeecc-CCCchhhhhhhhcc-ChhhHHHHHHH
Q 013572 95 LPDSFRNSFKMSSSTFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLFRLV-NGSTYSEIATRFEV-TESVTRFCVKQ 172 (440)
Q Consensus 95 ~~~~F~~~fRms~~tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~~La-~g~s~~~la~~Fgv-s~sTv~~~v~~ 172 (440)
+-++.-..++||+.+|.+++...... .+ ...--..++..+...|. ++.+..+||...|- +.+..++.+++
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~~~g~----s~----~~~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~ 92 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKKNFGI----PF----QDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKK 92 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHSS----CH----HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCc----CH----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 55778889999999999988765211 00 11222455555555554 46799999999998 56777777766
Q ss_pred HH
Q 013572 173 LC 174 (440)
Q Consensus 173 v~ 174 (440)
..
T Consensus 93 ~~ 94 (103)
T 3lsg_A 93 YY 94 (103)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 342
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=23.09 E-value=46 Score=31.33 Aligned_cols=39 Identities=10% Similarity=-0.047 Sum_probs=29.5
Q ss_pred HHHhhheeeccCCCchhhhhhhhc-------cChhhHHHHHHHHHH
Q 013572 137 IRLGIGLFRLVNGSTYSEIATRFE-------VTESVTRFCVKQLCR 175 (440)
Q Consensus 137 ~~L~i~L~~La~g~s~~~la~~Fg-------vs~sTv~~~v~~v~~ 175 (440)
+.=++.+..+..|.+...++..++ +|++||.++++++..
T Consensus 10 ~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~ 55 (345)
T 3hot_A 10 QTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS 55 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence 333455566778988888777755 999999999998753
No 343
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=23.00 E-value=35 Score=27.07 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=23.2
Q ss_pred eccCCCchhhhhhhhccChhhHHHHHH
Q 013572 145 RLVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 145 ~La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
+...|.+..++|...|||+++++++=.
T Consensus 16 R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 16 REERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 346789999999999999999998754
No 344
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=22.91 E-value=39 Score=28.36 Aligned_cols=33 Identities=9% Similarity=-0.052 Sum_probs=25.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++.+|..--..+...+
T Consensus 37 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 69 (206)
T 3kz9_A 37 RGGHADIAEIAQVSVATVFNYFPTREDLVDEVL 69 (206)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHH
T ss_pred cccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 578999999999999999988766554444443
No 345
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=22.78 E-value=50 Score=27.89 Aligned_cols=34 Identities=6% Similarity=0.088 Sum_probs=26.6
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+.+.++|+..-|||++|++.+|..--..+...+
T Consensus 31 ~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~ 64 (197)
T 2hyt_A 31 ADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVV 64 (197)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3678999999999999999998876555444444
No 346
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=22.76 E-value=67 Score=24.86 Aligned_cols=28 Identities=18% Similarity=0.033 Sum_probs=23.1
Q ss_pred cCCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 147 VNGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 147 a~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
....+..++|..+|+|.+++++.+++.+
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 48 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQYL 48 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3345667999999999999999998873
No 347
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=22.75 E-value=39 Score=28.94 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=22.0
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
.+.+.++|+..-|||++|++.+|..--
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sKe 56 (210)
T 2wui_A 30 GTTAMADLADAAGVSRGAVYGHYKNKI 56 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 368899999999999999987754433
No 348
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=22.75 E-value=40 Score=28.21 Aligned_cols=33 Identities=9% Similarity=0.213 Sum_probs=25.8
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 28 ~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~ 60 (194)
T 3dpj_A 28 QTSFVDISAAVGISRGNFYYHFKTKDEILAEVI 60 (194)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHH
Confidence 678999999999999999988765554444443
No 349
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=22.73 E-value=55 Score=25.59 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=25.1
Q ss_pred eeccCC-Cc--hhhhhhhh-ccChhhHHHHHHHHHH
Q 013572 144 FRLVNG-ST--YSEIATRF-EVTESVTRFCVKQLCR 175 (440)
Q Consensus 144 ~~La~g-~s--~~~la~~F-gvs~sTv~~~v~~v~~ 175 (440)
+.|..| .+ +.+++..+ |+|++|+++.+++..+
T Consensus 34 ~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 69 (111)
T 3df8_A 34 SVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLID 69 (111)
T ss_dssp HHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 334444 45 89999999 9999999998887665
No 350
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=22.72 E-value=50 Score=28.22 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=26.4
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+.+.++|+..-|||++|++++|..--..+...+
T Consensus 31 ~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~~ 64 (211)
T 3bhq_A 31 DGTSMEEIATKAGASKQTVYKHFTDKETLFGEVV 64 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3678999999999999999998866544444443
No 351
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=22.57 E-value=40 Score=28.57 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=25.5
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 34 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (212)
T 3knw_A 34 GVGLQEILKTSGVPKGSFYHYFESKEAFGCELL 66 (212)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 678899999999999999988765554444333
No 352
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=22.53 E-value=40 Score=28.29 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=25.7
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 56 (185)
T 2yve_A 24 TLSYDSLAEATGLSKSGLIYHFPSRHALLLGMH 56 (185)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred hccHHHHHHHhCCChHHHHHhCcCHHHHHHHHH
Confidence 578899999999999999988766555444443
No 353
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.51 E-value=49 Score=28.20 Aligned_cols=34 Identities=3% Similarity=0.136 Sum_probs=26.9
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+.+.++|+..-|||++|++.+|..=-..+...+
T Consensus 30 ~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~av~ 63 (202)
T 2i10_A 30 EGTSITDLTKALGINPPSLYAAFGSKRDLFEKTL 63 (202)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHhCCHHHHHHHHH
Confidence 3688999999999999999998876555554444
No 354
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=22.51 E-value=41 Score=28.48 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=25.8
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 38 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 70 (212)
T 1pb6_A 38 GTRLEQIAELAGVSKTNLLYYFPSKEALYIAVL 70 (212)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHH
T ss_pred hhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHH
Confidence 578999999999999999988766554444443
No 355
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=22.20 E-value=37 Score=29.08 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=25.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 43 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 75 (214)
T 2zb9_A 43 QLTFERVARVSGVSKTTLYKWWPSKGALALDGY 75 (214)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 678999999999999999988765544444333
No 356
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=22.14 E-value=41 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=24.2
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
.+.+.++|+..-|||++|++.+|..--+.+.
T Consensus 29 ~~~s~~~IA~~aGvs~~t~Y~~F~sKe~L~~ 59 (210)
T 3vib_A 29 ARTSLNEIAQAAGVTRDALYWHFKNKEDLFD 59 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred ccCCHHHHHHHHCcCHHHHHHHCCCHHHHHH
Confidence 3678999999999999999988655444333
No 357
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=22.09 E-value=30 Score=29.89 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=23.7
Q ss_pred eeeccCCCchhhhhhhhccChhhHHHH
Q 013572 143 LFRLVNGSTYSEIATRFEVTESVTRFC 169 (440)
Q Consensus 143 L~~La~g~s~~~la~~Fgvs~sTv~~~ 169 (440)
-++-.+|.++.++|...|||++|++++
T Consensus 97 ~lR~~~glTQ~elA~~LGvsr~tis~y 123 (170)
T 2auw_A 97 DWMHRNNLSLTTAAEALGISRRMVSYY 123 (170)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHH
Confidence 345778999999999999999999876
No 358
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=22.07 E-value=38 Score=28.47 Aligned_cols=33 Identities=6% Similarity=-0.012 Sum_probs=25.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 37 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 69 (208)
T 3cwr_A 37 AMTMEGVASEAGIAKKTLYRFASGRADLIGLLV 69 (208)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred hccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 678999999999999999988665544444443
No 359
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=21.84 E-value=41 Score=28.16 Aligned_cols=33 Identities=9% Similarity=0.173 Sum_probs=25.8
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (203)
T 3f1b_A 34 ETSMDAIAAKAEISKPMLYLYYGSKDELFAACI 66 (203)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHH
T ss_pred cccHHHHHHHhCCchHHHHHHhCCHHHHHHHHH
Confidence 578899999999999999988765555544443
No 360
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=21.80 E-value=58 Score=26.15 Aligned_cols=40 Identities=10% Similarity=-0.079 Sum_probs=30.1
Q ss_pred HHHHhhheeecc--CCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLV--NGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La--~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
..++.-++.++. .+.+..++|..+|+|.++.++.|++...
T Consensus 78 ~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G 119 (133)
T 1u8b_A 78 LDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTG 119 (133)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 344555555554 5678899999999999999999887653
No 361
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=21.72 E-value=77 Score=27.43 Aligned_cols=75 Identities=15% Similarity=0.052 Sum_probs=48.5
Q ss_pred HHHhhcCCCHHHHHHHHHHhcccccccCCCCCCCCCCHHHHHhhhee----eccCCCchhhhhhhhccChhhHHHHHHHH
Q 013572 98 SFRNSFKMSSSTFRWLSGLLEPLLDCRDPVGLPLNLSADIRLGIGLF----RLVNGSTYSEIATRFEVTESVTRFCVKQL 173 (440)
Q Consensus 98 ~F~~~fRms~~tF~~L~~~L~~~l~~~~~~~r~~~is~e~~L~i~L~----~La~g~s~~~la~~Fgvs~sTv~~~v~~v 173 (440)
++-..+++++.+-+.=...++-...+....| -+++.-.+.+|+ .-...-+.++++..++++..++.+..+.+
T Consensus 18 ~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~g----r~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~~~~l 93 (200)
T 1ais_B 18 RITAQLKLPRHVEEEAARLYREAVRKGLIRG----RSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFI 93 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTTTTTT----CCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCCcCC----CCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4667788887776665555554444433333 344444444443 34567889999999999998888777765
Q ss_pred HHH
Q 013572 174 CRV 176 (440)
Q Consensus 174 ~~~ 176 (440)
.+.
T Consensus 94 ~~~ 96 (200)
T 1ais_B 94 ARN 96 (200)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 362
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=21.60 E-value=52 Score=29.74 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=19.5
Q ss_pred hhhhhhhhccChhhHHHHHHHHHH
Q 013572 152 YSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 152 ~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
-++++..||||+.||.+.+.....
T Consensus 37 e~~La~~~~vSr~tvr~Al~~L~~ 60 (243)
T 2wv0_A 37 EREYAEQFGISRMTVRQALSNLVN 60 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 368899999999999987776553
No 363
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=21.26 E-value=44 Score=28.17 Aligned_cols=33 Identities=6% Similarity=0.035 Sum_probs=25.2
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+...|||++|+++++..--+.+...+
T Consensus 32 ~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~ 64 (189)
T 3vp5_A 32 EAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVL 64 (189)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cccHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 567889999999999999988765555444433
No 364
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=21.21 E-value=45 Score=28.38 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=26.0
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 31 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 63 (216)
T 3f0c_A 31 KTTMNEIASDVGMGKASLYYYFPDKETLFEAVI 63 (216)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 578999999999999999988766555544444
No 365
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=21.11 E-value=55 Score=29.50 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=19.5
Q ss_pred hhhhhhhhccChhhHHHHHHHHHH
Q 013572 152 YSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 152 ~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
-++++..||||+.||.+.+.....
T Consensus 36 e~~La~~~~vSr~tvr~Al~~L~~ 59 (236)
T 3edp_A 36 ETALQEIYSSSRTTIRRAVDLLVE 59 (236)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 367889999999999987776553
No 366
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=21.07 E-value=44 Score=28.56 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=25.8
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 50 ~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~ 82 (222)
T 3bru_A 50 SVGVDEILKAARVPKGSFYHYFRNKADFGLALI 82 (222)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHH
Confidence 578899999999999999988766555444443
No 367
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=21.04 E-value=72 Score=24.16 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=22.2
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
..+..++|..+|+|.+++++.+++.+
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~ 44 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNF 44 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44567999999999999999998874
No 368
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=20.99 E-value=46 Score=25.97 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=28.8
Q ss_pred CHHHHHhhheee--ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 134 SADIRLGIGLFR--LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 134 s~e~~L~i~L~~--La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
.....++-.|.. -..|.+..++|...|||++|++++-+
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 345555555544 45689999999999999999998743
No 369
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=20.99 E-value=55 Score=29.74 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=18.7
Q ss_pred hhhhhhhhccChhhHHHHHHHHH
Q 013572 152 YSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 152 ~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
-++++..||||+.||.+.+....
T Consensus 39 e~~La~~~~vSr~tvr~Al~~L~ 61 (248)
T 3f8m_A 39 EREIAEQFEVARETVRQALRELL 61 (248)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 36788999999999998766554
No 370
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=20.89 E-value=44 Score=28.27 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=26.0
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 32 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 64 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHFPTKQALVVAVA 64 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 578999999999999999988766555544444
No 371
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=20.87 E-value=45 Score=28.14 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=24.3
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
.+.+.++|+..-|||++|++.+|..=-..+.
T Consensus 29 ~~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~ 59 (194)
T 2nx4_A 29 EAANMRDIATEAGYTNGALSHYFAGKDEILR 59 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchHHHhCcCHHHHHH
Confidence 4688999999999999999988765433333
No 372
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=20.85 E-value=48 Score=27.69 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=24.0
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHH
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVL 177 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i 177 (440)
+.+.++|+..-|||++|++++|..--..+
T Consensus 23 ~~s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 23 ATSVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 57889999999999999999876554444
No 373
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=20.81 E-value=46 Score=27.92 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=26.8
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 28 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~a~~ 60 (195)
T 3frq_A 28 EFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMM 60 (195)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 578999999999999999999876655555444
No 374
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.67 E-value=42 Score=28.30 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=26.0
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 35 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 67 (199)
T 2rek_A 35 DASLEEIARRAGVGSATLHRHFPSRWGLLQAVF 67 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCHHHHHHHhCCchHHHHHHCCCHHHHHHHHH
Confidence 578999999999999999988765555444443
No 375
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=20.66 E-value=45 Score=28.45 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=26.0
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
.+.+.++|+..-|||++|++++|..--..+...+
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~~~~ 63 (210)
T 2xdn_A 30 ARTTLADIAELAGVTRGAIYWHFNNKAELVQALL 63 (210)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHH
T ss_pred ccCcHHHHHHHHCCChHHHHHHhCCHHHHHHHHH
Confidence 3678999999999999999988765544444443
No 376
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=20.64 E-value=69 Score=28.38 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=30.8
Q ss_pred HHHHhhheeeccCCCchhhhhhhhccChhhHHHHHHHHHH
Q 013572 136 DIRLGIGLFRLVNGSTYSEIATRFEVTESVTRFCVKQLCR 175 (440)
Q Consensus 136 e~~L~i~L~~La~g~s~~~la~~Fgvs~sTv~~~v~~v~~ 175 (440)
.+...-+++.|....+-++||...|+|++||+..++..-+
T Consensus 17 ~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e 56 (200)
T 2p8t_A 17 VEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSH 56 (200)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555566666666778899999999999999987766543
No 377
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=20.57 E-value=45 Score=28.32 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=25.2
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHHHh
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLCTN 180 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~ 180 (440)
.+.+.++|+..-|||++|++.+|..--..+...
T Consensus 33 ~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~ 65 (204)
T 2ibd_A 33 RATTVRDIADAAGILSGSLYHHFDSKESMVDEI 65 (204)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHH
Confidence 367899999999999999998876544444333
No 378
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=20.53 E-value=49 Score=26.45 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=22.0
Q ss_pred ccCCCchhhhhhhhccChhhHHHHHH
Q 013572 146 LVNGSTYSEIATRFEVTESVTRFCVK 171 (440)
Q Consensus 146 La~g~s~~~la~~Fgvs~sTv~~~v~ 171 (440)
...|.+..++|...|||++|++++.+
T Consensus 50 ~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 50 DRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35688899999999999999998643
No 379
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=20.39 E-value=47 Score=28.18 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=25.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 51 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~ 83 (218)
T 3dcf_A 51 ATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIV 83 (218)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 578899999999999999988765555444443
No 380
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=20.33 E-value=43 Score=28.59 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=25.5
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 23 ~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~~a~~ 55 (212)
T 3rh2_A 23 TITTNHIAAHLDISPGNLYYHFRNKEDIIRCIF 55 (212)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 578899999999999999988765554444433
No 381
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=20.31 E-value=58 Score=29.33 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=18.7
Q ss_pred hhhhhhhhccChhhHHHHHHHHH
Q 013572 152 YSEIATRFEVTESVTRFCVKQLC 174 (440)
Q Consensus 152 ~~~la~~Fgvs~sTv~~~v~~v~ 174 (440)
-++++..||||+.||.+.+....
T Consensus 32 e~~La~~~~vSr~tvr~Al~~L~ 54 (239)
T 3bwg_A 32 LETLMAQFEVSKSTITKSLELLE 54 (239)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 46789999999999988766544
No 382
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=20.23 E-value=43 Score=28.26 Aligned_cols=33 Identities=12% Similarity=-0.094 Sum_probs=25.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHhh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTNF 181 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~l 181 (440)
+.+.++|+..-|||++|++++|..--..+...+
T Consensus 28 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 60 (199)
T 2o7t_A 28 SLTMENIAEQAGVGVATLYRNFPDRFTLDMACA 60 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 568899999999999999988766555444443
No 383
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=20.17 E-value=34 Score=28.65 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=23.5
Q ss_pred CCCchhhhhhhhccChhhHHHHHHHHHHHHH
Q 013572 148 NGSTYSEIATRFEVTESVTRFCVKQLCRVLC 178 (440)
Q Consensus 148 ~g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~ 178 (440)
.+.+.++|+..-|||++|++++|..--..+.
T Consensus 26 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 56 (199)
T 3qbm_A 26 AGTAISDIMAATGLEKGGIYRHFESKEQLAL 56 (199)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSSHHHHHH
T ss_pred CcCCHHHHHHHhCCCccHHHHhCCCHHHHHH
Confidence 3578899999999999999877654443333
No 384
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=20.03 E-value=40 Score=28.58 Aligned_cols=32 Identities=22% Similarity=0.025 Sum_probs=24.6
Q ss_pred CCchhhhhhhhccChhhHHHHHHHHHHHHHHh
Q 013572 149 GSTYSEIATRFEVTESVTRFCVKQLCRVLCTN 180 (440)
Q Consensus 149 g~s~~~la~~Fgvs~sTv~~~v~~v~~~i~~~ 180 (440)
+.+..+|+..-|||++|++++|..--..+...
T Consensus 29 ~~t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~~ 60 (204)
T 3anp_C 29 ETTATEIAKAAHVSRGTFFNYYPYKEAVLLDY 60 (204)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSTHHHHHHH
T ss_pred cccHHHHHHHcCCchHHHHHHcCCHHHHHHHH
Confidence 57889999999999999998876544444333
Done!