BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013573
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
Atwrky4
pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
W-Box Dna
Length = 78
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 246 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITT 305
VQT SEVD+LDDGYRWRKYGQKVV+GNP PRSYYKCT GC VRKHVERA+ DPKAV+TT
Sbjct: 8 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 306 YEGKHNHDVP 315
YEGKHNHD+P
Sbjct: 68 YEGKHNHDLP 77
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 94 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKP 152
DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K ER+ D + Y+G H+H P
Sbjct: 18 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77
>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
An Sa-Induced And Partially Npr1-Dependent Transcription
Factor
Length = 76
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 64/73 (87%)
Query: 243 RVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAV 302
R+VV T + DI++DGYRWRKYGQK V+G+P PRSYY+C++ GCPV+KHVER+SHD K +
Sbjct: 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 303 ITTYEGKHNHDVP 315
ITTYEGKH+HD+P
Sbjct: 62 ITTYEGKHDHDMP 74
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 94 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER-SHDGQITEIIYKGTHDHPKP 152
+DGY WRKYGQK VKGS +PRSYY+C+ P C VKK ER SHD ++ Y+G HDH P
Sbjct: 15 NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74
>pdb|1O6D|A Chain A, Crystal Structure Of A Hypothetical Protein
Length = 163
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 95 DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQL 154
DG+ K G KH + +F R + C E+K R H G I EI+ K T D L
Sbjct: 14 DGFI--KEGIKHYE--KFLRRF--CKPEVLEIK----RVHRGSIEEIVRKETED-----L 58
Query: 155 SRRYSAGNMMSIQEERPDKVSS 176
+ R G+ + + ++R ++VSS
Sbjct: 59 TNRILPGSFVMVMDKRGEEVSS 80
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 129 LFERS----HDGQITE-IIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGS 183
LF RS H ++ E +I T + QLS YS G+ + Q++ PD + + + G
Sbjct: 243 LFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPQKKNPDSLELIRSKAGR 302
Query: 184 MYGQMSHAMET-NGTP 198
++G+ + + T G P
Sbjct: 303 VFGRCAGLLMTLKGLP 318
>pdb|2VHL|A Chain A, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
pdb|2VHL|B Chain B, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
Length = 396
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 133 SHDGQITEIIYKGTHDHP 150
+HDG +TE+I G H HP
Sbjct: 244 AHDGFVTELIADGIHSHP 261
>pdb|1X3C|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 292
Length = 73
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 279 YKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAG 330
Y+C + GC ++ + +I Y+ H D+P + +GPS+G
Sbjct: 28 YRCVHQGCFAAFTIQ------QNLILHYQAVHKSDLPAFSAEVEEESGPSSG 73
>pdb|1ODH|A Chain A, Structure Of The Gcm Domain Bound To Dna
Length = 174
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 134 HDGQITEIIYKGTHDHPKPQLSRRYSAGNMM 164
HDG+ KG HDHP+P+ A M
Sbjct: 139 HDGRFIFFQSKGEHDHPRPETKLEAEARRAM 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,191,536
Number of Sequences: 62578
Number of extensions: 547815
Number of successful extensions: 726
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 10
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)