Query 013573
Match_columns 440
No_of_seqs 349 out of 1198
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 2.2E-35 7.6E-40 239.7 4.6 75 242-316 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 6E-35 2.1E-39 238.1 3.5 75 242-316 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 3E-30 1E-34 209.6 5.5 64 90-153 11-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 3.6E-30 1.2E-34 210.0 5.7 64 90-153 14-78 (78)
5 2rpr_A Flywch-type zinc finger 76.2 1.5 5.3E-05 35.0 2.7 51 90-152 21-74 (87)
6 2rpr_A Flywch-type zinc finger 58.7 3.3 0.00011 33.1 1.2 53 250-315 19-74 (87)
7 1odh_A MGCM1; transcription fa 32.4 26 0.00088 32.2 2.8 22 134-155 139-160 (174)
8 1cz6_A Protein (androctonin); 29.3 14 0.00048 23.8 0.4 8 115-122 16-23 (26)
9 1odh_A MGCM1; transcription fa 10.7 1.7E+02 0.0058 26.9 3.2 39 278-319 122-161 (174)
10 1xiw_B T-cell surface glycopro 10.5 38 0.0013 26.8 -1.1 27 94-120 17-53 (79)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=2.2e-35 Score=239.67 Aligned_cols=75 Identities=67% Similarity=1.285 Sum_probs=72.7
Q ss_pred CceeeeccccccCCCcCchhhhccCcccCCCCCCCcccccCCCCCCcccchhhccCCCCeEEEEEeccCCCCCCC
Q 013573 242 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT 316 (440)
Q Consensus 242 ~~v~v~t~s~~~~~~DGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~ 316 (440)
.||+|++.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=6e-35 Score=238.11 Aligned_cols=75 Identities=79% Similarity=1.317 Sum_probs=69.6
Q ss_pred CceeeeccccccCCCcCchhhhccCcccCCCCCCCcccccCCCCCCcccchhhccCCCCeEEEEEeccCCCCCCC
Q 013573 242 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT 316 (440)
Q Consensus 242 ~~v~v~t~s~~~~~~DGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~ 316 (440)
.+|++++.+++++++|||+|||||||.|||+++||+|||||++||+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999884
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.96 E-value=3e-30 Score=209.62 Aligned_cols=64 Identities=55% Similarity=1.029 Sum_probs=59.9
Q ss_pred CCCCCCCccccccCccCCCCCCCCCCcccccCCCcceeeeEEecc-CCceEEEEecCCCCCCCCC
Q 013573 90 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 153 (440)
Q Consensus 90 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~ver~~-dg~~~~i~Y~G~H~H~~p~ 153 (440)
..+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus 11 ~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 11 FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 345799999999999999999999999999999999999999975 7899999999999999885
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.96 E-value=3.6e-30 Score=209.97 Aligned_cols=64 Identities=53% Similarity=1.001 Sum_probs=59.6
Q ss_pred CCCCCCCccccccCccCCCCCCCCCCcccccCCCcceeeeEEec-cCCceEEEEecCCCCCCCCC
Q 013573 90 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKPQ 153 (440)
Q Consensus 90 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~ver~-~dg~~~~i~Y~G~H~H~~p~ 153 (440)
..+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+ .|+.++.|+|+|+|||+.|.
T Consensus 14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 34589999999999999999999999999999999999999996 58899999999999999873
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=76.23 E-value=1.5 Score=35.04 Aligned_cols=51 Identities=16% Similarity=0.352 Sum_probs=33.2
Q ss_pred CCCCCCCccccccCccCCCCCCCCCCcccccC---CCcceeeeEEeccCCceEEEEecCCCCCCCC
Q 013573 90 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTH---PNCEVKKLFERSHDGQITEIIYKGTHDHPKP 152 (440)
Q Consensus 90 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~---~~C~akK~ver~~dg~~~~i~Y~G~H~H~~p 152 (440)
.....|||...+--+ ...+.|.+|+. ..|.|+=.... ++ ++..+.|||++.
T Consensus 21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence 345689998776432 13368999986 47999754332 22 446789999753
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=58.72 E-value=3.3 Score=33.10 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=34.1
Q ss_pred ccccCCCcCchhhhccCcccCCCCCCCcccccCC---CCCCcccchhhccCCCCeEEEEEeccCCCCCC
Q 013573 250 SEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTN---AGCPVRKHVERASHDPKAVITTYEGKHNHDVP 315 (440)
Q Consensus 250 s~~~~~~DGy~WRKYGQK~ikgn~~pRsYYrCt~---~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p 315 (440)
....++-|||...+--+ ...+.|.+|+. .+|.|+=.... + .+ ...+.|||++.
T Consensus 19 G~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~--~~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 19 GGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H--RI--MVMRSHCHQPD 74 (87)
T ss_dssp TEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T--EE--EECSCCSSCCC
T ss_pred CCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C--CE--ECCCCcCCCCc
Confidence 33457789998775321 12468999984 58999855442 2 12 35688999754
No 7
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=32.44 E-value=26 Score=32.22 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=15.0
Q ss_pred cCCceEEEEecCCCCCCCCCCc
Q 013573 134 HDGQITEIIYKGTHDHPKPQLS 155 (440)
Q Consensus 134 ~dg~~~~i~Y~G~H~H~~p~~~ 155 (440)
+||..+..--+|.|+||+|...
T Consensus 139 h~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 139 HDGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp ECSSBEEEEEECCCCSCCCCCH
T ss_pred EcCCEEEEecccccCCCCCCCc
Confidence 3444444445899999999864
No 8
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=29.34 E-value=14 Score=23.80 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.6
Q ss_pred CcccccCC
Q 013573 115 SYYKCTHP 122 (440)
Q Consensus 115 sYYrCt~~ 122 (440)
.|||||.+
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999964
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=10.74 E-value=1.7e+02 Score=26.89 Aligned_cols=39 Identities=26% Similarity=0.537 Sum_probs=24.8
Q ss_pred ccccC-CCCCCcccchhhccCCCCeEEEEEeccCCCCCCCCCC
Q 013573 278 YYKCT-NAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTART 319 (440)
Q Consensus 278 YYrCt-~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~~r~ 319 (440)
-+.|. +-|=||+ +..|- |...+...=+|.|+|+.|....
T Consensus 122 ~~~Crgh~GyPVT-hFWrh--~~~~ifFqaKG~HDHpRPe~k~ 161 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWRH--DGRFIFFQSKGEHDHPRPETKL 161 (174)
T ss_dssp EECCCTBTTBCCE-EEEEE--CSSBEEEEEECCCCSCCCCCHH
T ss_pred eEeccCcCCCcce-EEEEE--cCCEEEEecccccCCCCCCCcc
Confidence 34554 3455664 44543 4445657789999999998643
No 10
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=10.46 E-value=38 Score=26.79 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=19.1
Q ss_pred CCCccccccCccC--------CC--CCCCCCCccccc
Q 013573 94 DDGYNWRKYGQKH--------VK--GSEFPRSYYKCT 120 (440)
Q Consensus 94 ~DGy~WRKYGQK~--------ik--gs~~pRsYYrCt 120 (440)
..++.|-|-|... +. ...-||+||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5678999988642 23 334499999994
Done!