Query 013573
Match_columns 440
No_of_seqs 349 out of 1198
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 13:07:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013573.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013573hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wj2a_ g.79.1.1 (A:) WRKY DNA 100.0 9.4E-35 6.8E-39 231.1 3.5 71 246-316 1-71 (71)
2 d1wj2a_ g.79.1.1 (A:) WRKY DNA 100.0 1.5E-30 1.1E-34 206.9 6.7 62 92-153 9-71 (71)
3 d1x3ca1 g.37.1.1 (A:8-68) Zinc 22.3 3.6 0.00026 29.7 -2.1 33 278-316 20-52 (61)
4 d1odha_ d.239.1.1 (A:) Mgcm1 { 22.0 25 0.0018 29.8 2.8 16 140-155 132-147 (158)
5 d2j7ja2 g.37.1.1 (A:29-57) Tra 16.1 20 0.0015 22.3 0.7 10 117-126 4-13 (29)
6 d1ubdc4 g.37.1.1 (C:381-408) Y 11.5 34 0.0025 21.0 0.8 9 117-125 3-11 (28)
7 d1odha_ d.239.1.1 (A:) Mgcm1 { 10.7 41 0.003 28.4 1.3 38 279-319 110-148 (158)
8 d2plga1 d.198.1.2 (A:3-154) Un 10.1 25 0.0018 29.3 -0.4 15 255-269 44-59 (152)
9 d1zfda_ g.37.1.1 (A:) SWI5 zin 10.1 41 0.003 21.1 0.8 10 117-126 4-13 (32)
10 d1a1ia1 g.37.1.1 (A:103-131) Z 9.2 44 0.0032 20.5 0.7 9 117-125 3-11 (29)
No 1
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=9.4e-35 Score=231.09 Aligned_cols=71 Identities=83% Similarity=1.420 Sum_probs=68.2
Q ss_pred eeccccccCCCcCchhhhccCcccCCCCCCCcccccCCCCCCcccchhhccCCCCeEEEEEeccCCCCCCC
Q 013573 246 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT 316 (440)
Q Consensus 246 v~t~s~~~~~~DGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~ 316 (440)
|++.+++++++|||+|||||||.|||+++||+||||+.+||+|+|+|||+.+|+.+|+|||+|+|||+.|+
T Consensus 1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps 71 (71)
T d1wj2a_ 1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 71 (71)
T ss_dssp CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999885
No 2
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.96 E-value=1.5e-30 Score=206.85 Aligned_cols=62 Identities=55% Similarity=1.052 Sum_probs=58.8
Q ss_pred CCCCCccccccCccCCCCCCCCCCcccccCCCcceeeeEEecc-CCceEEEEecCCCCCCCCC
Q 013573 92 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ 153 (440)
Q Consensus 92 ~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~ver~~-dg~~~~i~Y~G~H~H~~p~ 153 (440)
..+|||+|||||||.|||++|||+||||++++|+|+|+|||+. |+.++.|+|+|+|||+.|.
T Consensus 9 ~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps 71 (71)
T d1wj2a_ 9 LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 71 (71)
T ss_dssp CCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred cCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence 4799999999999999999999999999999999999999975 7899999999999999873
No 3
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.35 E-value=3.6 Score=29.67 Aligned_cols=33 Identities=27% Similarity=0.706 Sum_probs=26.0
Q ss_pred ccccCCCCCCcccchhhccCCCCeEEEEEeccCCCCCCC
Q 013573 278 YYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT 316 (440)
Q Consensus 278 YYrCt~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~ 316 (440)
=|||.+.||-+---+|. .+|.-|.-.|--+.|.
T Consensus 20 pyrcvhqgc~aaftiq~------nlilhy~avh~s~lp~ 52 (61)
T d1x3ca1 20 PYRCVHQGCFAAFTIQQ------NLILHYQAVHKSDLPA 52 (61)
T ss_dssp SCBCCSTTCCCBCSSHH------HHHHHHHHHSSSCCCC
T ss_pred ceeeeccchhhhhhhhh------hHHHHHHHHhhhcCch
Confidence 48999999999887775 3567888888766664
No 4
>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.97 E-value=25 Score=29.82 Aligned_cols=16 Identities=44% Similarity=0.794 Sum_probs=12.5
Q ss_pred EEEecCCCCCCCCCCc
Q 013573 140 EIIYKGTHDHPKPQLS 155 (440)
Q Consensus 140 ~i~Y~G~H~H~~p~~~ 155 (440)
..--+|.|+|++|...
T Consensus 132 ~fqakG~HdHpRPe~k 147 (158)
T d1odha_ 132 FFQSKGEHDHPRPETK 147 (158)
T ss_dssp EEEEECCCCSCCCCCH
T ss_pred EEecccccCCCCCCCC
Confidence 3556899999999753
No 5
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=16.12 E-value=20 Score=22.29 Aligned_cols=10 Identities=40% Similarity=1.298 Sum_probs=8.6
Q ss_pred ccccCCCcce
Q 013573 117 YKCTHPNCEV 126 (440)
Q Consensus 117 YrCt~~~C~a 126 (440)
|+|.|.+|--
T Consensus 4 y~c~hegcdk 13 (29)
T d2j7ja2 4 YECPHEGCDK 13 (29)
T ss_dssp EECCSTTCCC
T ss_pred ccCCccCccc
Confidence 8999999964
No 6
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.54 E-value=34 Score=21.00 Aligned_cols=9 Identities=33% Similarity=1.099 Sum_probs=7.7
Q ss_pred ccccCCCcc
Q 013573 117 YKCTHPNCE 125 (440)
Q Consensus 117 YrCt~~~C~ 125 (440)
|+|++++|.
T Consensus 3 f~C~~~gC~ 11 (28)
T d1ubdc4 3 YVCPFDGCN 11 (28)
T ss_dssp CCCCSTTCC
T ss_pred cCCCCCCcC
Confidence 789999986
No 7
>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.69 E-value=41 Score=28.37 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=22.2
Q ss_pred cccC-CCCCCcccchhhccCCCCeEEEEEeccCCCCCCCCCC
Q 013573 279 YKCT-NAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTART 319 (440)
Q Consensus 279 YrCt-~~gC~akK~Ver~~~D~~~~~~tY~G~HnH~~p~~r~ 319 (440)
++|. +.|=||. +..|- ++..+| ..=+|.|+|+.|.+++
T Consensus 110 ~~Crgh~GypVt-hfWr~-~~~~i~-fqakG~HdHpRPe~k~ 148 (158)
T d1odha_ 110 IPCRGHGGFPVT-NFWRH-DGRFIF-FQSKGEHDHPRPETKL 148 (158)
T ss_dssp ECCCTBTTBCCE-EEEEE-CSSBEE-EEEECCCCSCCCCCHH
T ss_pred EeccCccCCcce-EEEEE-cCCEEE-EecccccCCCCCCCCc
Confidence 3444 3344553 33443 233344 6778999999998653
No 8
>d2plga1 d.198.1.2 (A:3-154) Uncharacterized protein Tll0839 {Synechococcus elongatus [TaxId: 32046]}
Probab=10.09 E-value=25 Score=29.33 Aligned_cols=15 Identities=40% Similarity=0.820 Sum_probs=12.2
Q ss_pred CCcCchhh-hccCccc
Q 013573 255 LDDGYRWR-KYGQKVV 269 (440)
Q Consensus 255 ~~DGy~WR-KYGQK~i 269 (440)
.+||+.|+ |||+..|
T Consensus 44 ~~~g~~W~~~~Gs~~V 59 (152)
T d2plga1 44 TDSGKIWMFRYGSAEV 59 (152)
T ss_dssp ETTEEEEEEEETTEEE
T ss_pred CCCCceEEEEcCCEEE
Confidence 48999999 9998643
No 9
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.08 E-value=41 Score=21.07 Aligned_cols=10 Identities=50% Similarity=1.527 Sum_probs=8.3
Q ss_pred ccccCCCcce
Q 013573 117 YKCTHPNCEV 126 (440)
Q Consensus 117 YrCt~~~C~a 126 (440)
|.|++++|.-
T Consensus 4 ~~C~~pgC~k 13 (32)
T d1zfda_ 4 YSCDHPGCDK 13 (32)
T ss_dssp BCCCCTTCCC
T ss_pred eECcCCCCCC
Confidence 8899999963
No 10
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.21 E-value=44 Score=20.49 Aligned_cols=9 Identities=33% Similarity=1.169 Sum_probs=7.9
Q ss_pred ccccCCCcc
Q 013573 117 YKCTHPNCE 125 (440)
Q Consensus 117 YrCt~~~C~ 125 (440)
|+|.+++|.
T Consensus 3 ~~C~~~gC~ 11 (29)
T d1a1ia1 3 YACPVESCD 11 (29)
T ss_dssp EECCSTTCC
T ss_pred eECCCCCCC
Confidence 789999996
Done!